Citrus Sinensis ID: 022305
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 299 | 2.2.26 [Sep-21-2011] | |||||||
| Q7NZD3 | 244 | Ubiquinone/menaquinone bi | yes | no | 0.214 | 0.262 | 0.402 | 0.0001 | |
| C1DCV3 | 244 | Ubiquinone/menaquinone bi | yes | no | 0.167 | 0.204 | 0.433 | 0.0002 | |
| A6W0X8 | 270 | Malonyl-CoA O-methyltrans | yes | no | 0.254 | 0.281 | 0.278 | 0.0003 | |
| P34666 | 285 | 2-methoxy-6-polyprenyl-1, | yes | no | 0.237 | 0.249 | 0.373 | 0.0004 | |
| C1DHS2 | 253 | Ubiquinone/menaquinone bi | yes | no | 0.153 | 0.181 | 0.468 | 0.0006 | |
| Q1GC56 | 250 | Ubiquinone/menaquinone bi | yes | no | 0.150 | 0.18 | 0.478 | 0.0006 | |
| A9M3A0 | 245 | Ubiquinone/menaquinone bi | yes | no | 0.210 | 0.257 | 0.378 | 0.0007 |
| >sp|Q7NZD3|UBIE_CHRVO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiE PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 174 RNPVLTEYVVQDLNLN--PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-L 230
R+ +L E V+ ++L KLPF DN FD ++ + +T KEMC+VLKPGG L
Sbjct: 101 RDRLLDEGVILPVSLADAEKLPFPDNYFDAVSVAFGLRNMTHKDAALKEMCRVLKPGGKL 160
Query: 231 AIVSFSN 237
++ FS
Sbjct: 161 FVLEFSK 167
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 1 |
| >sp|C1DCV3|UBIE_LARHH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Laribacter hongkongensis (strain HLHK9) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWT 242
KLPF D+ FD+++ + +T + KEMC+VLKPGG L ++ FS WT
Sbjct: 120 KLPFPDSHFDLVSVAFGLRNMTHKDQALKEMCRVLKPGGKLLVLEFSK--VWT 170
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Laribacter hongkongensis (strain HLHK9) (taxid: 557598) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A6W0X8|BIOC_MARMS Malonyl-CoA O-methyltransferase BioC OS=Marinomonas sp. (strain MWYL1) GN=bioC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 179 TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
T YV D +LP +D S D++ + +++ + P+++FKE+ +V+KPGG + S ++
Sbjct: 99 THYVCADAE---RLPLQDRSCDLVFSSLAIQWCLSPLDLFKELYRVIKPGGYVVFSTLSQ 155
Query: 239 CFWTKAISIWTSTGDADHV 257
+ W + +HV
Sbjct: 156 GSMPEISKAWFGLDNKEHV 174
|
Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. Marinomonas sp. (strain MWYL1) (taxid: 400668) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 7 |
| >sp|P34666|COQ5_CAEEL 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Caenorhabditis elegans GN=coq-5 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 163 VGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMC 222
VG E+E P E+V + ++PFE N++D+ T + T P +V +E
Sbjct: 134 VGKKRAEKERDIQPSRAEWVCANAE---QMPFESNTYDLFTMSFGIRNCTHPEKVVREAF 190
Query: 223 QVLKPGG-LAIVSFS 236
+VLKPGG LAI+ FS
Sbjct: 191 RVLKPGGQLAILEFS 205
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|C1DHS2|UBIE_AZOVD Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
KLPF DN FDVIT + +T+ + + M +VLKPGG L ++ FS
Sbjct: 128 KLPFPDNHFDVITIAFGLRNVTRKEDALRSMLRVLKPGGRLLVLEFS 174
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Azotobacter vinelandii (strain DJ / ATCC BAA-1303) (taxid: 322710) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q1GC56|UBIE_RUEST Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Ruegeria sp. (strain TM1040) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
LPF+DN+FDV T + +T+P E E +VLKPGG L ++ FS
Sbjct: 126 LPFKDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFS 171
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Silicibacter sp. (strain TM1040) (taxid: 292414) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A9M3A0|UBIE_NEIM0 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Neisseria meningitidis serogroup C (strain 053442) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 174 RNPVLTEYVVQDLNLN--PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-L 230
R+ +L E ++ ++L KLPF DN F++++ + +T KEMC+VLKPGG L
Sbjct: 102 RDCLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDTALKEMCRVLKPGGTL 161
Query: 231 AIVSFS 236
++ FS
Sbjct: 162 LVLEFS 167
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Neisseria meningitidis serogroup C (strain 053442) (taxid: 374833) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 299 | ||||||
| 255546163 | 303 | methyltransferase, putative [Ricinus com | 0.969 | 0.957 | 0.724 | 1e-128 | |
| 224091311 | 311 | predicted protein [Populus trichocarpa] | 0.852 | 0.819 | 0.818 | 1e-125 | |
| 449446582 | 305 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.963 | 0.706 | 1e-123 | |
| 225444946 | 315 | PREDICTED: uncharacterized protein LOC10 | 0.839 | 0.796 | 0.796 | 1e-120 | |
| 388505360 | 304 | unknown [Lotus japonicus] | 0.862 | 0.848 | 0.751 | 1e-119 | |
| 356520871 | 301 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.960 | 0.697 | 1e-118 | |
| 357501293 | 308 | hypothetical protein MTR_6g092630 [Medic | 0.859 | 0.834 | 0.752 | 1e-116 | |
| 388492332 | 308 | unknown [Medicago truncatula] | 0.956 | 0.928 | 0.697 | 1e-115 | |
| 297799034 | 316 | hypothetical protein ARALYDRAFT_491801 [ | 0.949 | 0.898 | 0.689 | 1e-111 | |
| 15233624 | 317 | methyltransferase [Arabidopsis thaliana] | 0.939 | 0.886 | 0.695 | 1e-110 |
| >gi|255546163|ref|XP_002514141.1| methyltransferase, putative [Ricinus communis] gi|223546597|gb|EEF48095.1| methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/312 (72%), Positives = 258/312 (82%), Gaps = 22/312 (7%)
Query: 1 MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCR---RFKASRRLVVGLGA 57
MAN L LQQ+ +S + C + S +S K+ + RFKA RRLV+GLGA
Sbjct: 1 MANFMCLKLQQK---------LSVLATVCPNHYSPLSTKAHWKLNTRFKAPRRLVLGLGA 51
Query: 58 AFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFY 117
+F +Q M+ G G S IASAR++GAVE+VLK+V+WPE+FPFKEEDFQRFDESPDSLFY
Sbjct: 52 SFWAQIMSTVGVNGGKSFIASAREKGAVEEVLKNVEWPEKFPFKEEDFQRFDESPDSLFY 111
Query: 118 ETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS----------HFPPGYKQDRIVGMGM 167
E PRFVTHIDDPAIAALTKYY EVFPPSNTPGVS H+P GYKQDRIVG GM
Sbjct: 112 EAPRFVTHIDDPAIAALTKYYREVFPPSNTPGVSILDMCSSWVSHYPKGYKQDRIVGQGM 171
Query: 168 NEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKP 227
NEEELKRNPVLTEYVVQDLN+NPKLPFEDN FDVITN VSVDYLTKP++VFKEM ++LKP
Sbjct: 172 NEEELKRNPVLTEYVVQDLNINPKLPFEDNFFDVITNTVSVDYLTKPLDVFKEMGRILKP 231
Query: 228 GGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 287
GGLA++SFSNRCFWTKAISIWTSTGDADH++IVG+YFHYAGG+EPPQAVDISPNPGR+DP
Sbjct: 232 GGLAVMSFSNRCFWTKAISIWTSTGDADHIVIVGSYFHYAGGFEPPQAVDISPNPGRTDP 291
Query: 288 MYVVYSRKASTA 299
MY+VYSRKAS+A
Sbjct: 292 MYIVYSRKASSA 303
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091311|ref|XP_002309222.1| predicted protein [Populus trichocarpa] gi|222855198|gb|EEE92745.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/265 (81%), Positives = 235/265 (88%), Gaps = 10/265 (3%)
Query: 45 FKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEED 104
FKA RRLV+GLGA+F SQFM+MAG + LIA A+Q +E+VLK+V WP+QFPFKEED
Sbjct: 47 FKAPRRLVLGLGASFWSQFMSMAGRARSKHLIALAKQEVVIEEVLKNVDWPQQFPFKEED 106
Query: 105 FQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGV----------SHFP 154
FQRFDESPD LFY+ PRFVTHIDDPAIAALTKYYS+VFPPSNTPGV SHFP
Sbjct: 107 FQRFDESPDLLFYDAPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVCILDMCSSWVSHFP 166
Query: 155 PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214
GYKQ IVG+GMNEEELKRNPVLTEY VQDLNLNPKLPFEDNSFDVITN VSVDYL KP
Sbjct: 167 KGYKQYSIVGLGMNEEELKRNPVLTEYAVQDLNLNPKLPFEDNSFDVITNAVSVDYLAKP 226
Query: 215 IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQ 274
I+VFKEMC+VLKPGGLAI+SFSNRCFWTKAISIWTSTGDADHVMIVG+YFHY+GG+EPPQ
Sbjct: 227 IDVFKEMCRVLKPGGLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFHYSGGFEPPQ 286
Query: 275 AVDISPNPGRSDPMYVVYSRKASTA 299
AVDISPNPGRSDPMYVVYSRKASTA
Sbjct: 287 AVDISPNPGRSDPMYVVYSRKASTA 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446582|ref|XP_004141050.1| PREDICTED: uncharacterized protein LOC101203969 [Cucumis sativus] gi|449488025|ref|XP_004157919.1| PREDICTED: uncharacterized protein LOC101223479 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/310 (70%), Positives = 256/310 (82%), Gaps = 16/310 (5%)
Query: 1 MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFC 60
MA+ L L HR P+S S + S + + + S + + RRLV+GLG +F
Sbjct: 1 MASRIGLNL---HRGIPISLVAPSAVWSANSAATSLKRWSAGGKHR--RRLVLGLGISFW 55
Query: 61 SQFMTMAGTL-GANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYET 119
+ FM M+G+L GA S +ASAR + +VE++LK+V+WPE+FPF+EEDFQRFDE+PDS FYE+
Sbjct: 56 APFMNMSGSLVGAKSFVASARPKNSVEEILKNVEWPEKFPFREEDFQRFDETPDSYFYES 115
Query: 120 PRFVTHIDDPAIAALTKYYSEVFPPSNTPG----------VSHFPPGYKQDRIVGMGMNE 169
PRFVTHIDDPAIAALTK+YSEVFPPSNTPG VSHFP GYKQ+R+VGMGMNE
Sbjct: 116 PRFVTHIDDPAIAALTKFYSEVFPPSNTPGISMLDMCSSWVSHFPAGYKQERVVGMGMNE 175
Query: 170 EELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 229
EELKRN VLTEY+VQDLN+NPKLPFEDNSFDVITNVVSVDYLTKP+ VFKEM +VLKPGG
Sbjct: 176 EELKRNTVLTEYIVQDLNVNPKLPFEDNSFDVITNVVSVDYLTKPLTVFKEMSRVLKPGG 235
Query: 230 LAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMY 289
LAI+SFSNRCF+TKAISIWTSTGDADH+MIVG+YFHYAGG+EPPQAVDISPNPGRSDPMY
Sbjct: 236 LAIMSFSNRCFFTKAISIWTSTGDADHIMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMY 295
Query: 290 VVYSRKASTA 299
+VYSRK STA
Sbjct: 296 IVYSRKLSTA 305
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444946|ref|XP_002282381.1| PREDICTED: uncharacterized protein LOC100268021 [Vitis vinifera] gi|297738680|emb|CBI27925.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/266 (79%), Positives = 240/266 (90%), Gaps = 15/266 (5%)
Query: 49 RRLVVGLGAAFCSQFMTMAGTLGANS--LIASARQRGA---VEQVLKDVQWPEQFPFKEE 103
RRL++GLGA+F +QF++M+G+ G L+ASARQ+GA VEQ+LK+V+WPEQFPFKEE
Sbjct: 50 RRLLLGLGASFWAQFVSMSGSGGIGGKFLVASARQQGASSPVEQILKNVEWPEQFPFKEE 109
Query: 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS----------HF 153
DFQRFDE+PDS+FYE PRFVTHIDD AIAALTKYYS+VFPPSNT GVS HF
Sbjct: 110 DFQRFDETPDSIFYEGPRFVTHIDDQAIAALTKYYSKVFPPSNTAGVSILDMCSSWVSHF 169
Query: 154 PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213
P GYKQDR+VG+GMNEEELKRNPVLTE+VVQDLN+NPKLPFEDNSFDVITNVVSVDYLTK
Sbjct: 170 PAGYKQDRVVGLGMNEEELKRNPVLTEHVVQDLNVNPKLPFEDNSFDVITNVVSVDYLTK 229
Query: 214 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPP 273
PI+VFKEMC++LKPGGLAI+SFSNRCFWTKAISIWTSTGDADH +IVG+YFHYAGG+EPP
Sbjct: 230 PIDVFKEMCRILKPGGLAIMSFSNRCFWTKAISIWTSTGDADHALIVGSYFHYAGGFEPP 289
Query: 274 QAVDISPNPGRSDPMYVVYSRKASTA 299
QAVDISPNPGRSDPMY+VYSRK STA
Sbjct: 290 QAVDISPNPGRSDPMYIVYSRKLSTA 315
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505360|gb|AFK40746.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/274 (75%), Positives = 240/274 (87%), Gaps = 16/274 (5%)
Query: 39 KSDCRRFKASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWP 95
K+ RR K RR+++G GAA F SQF+ G G S IASAR G +V+++LK+V+WP
Sbjct: 34 KNWNRRVKGPRRMLLGFGAASFLSQFV---GVSGGKSFIASARITGGPSVDEILKNVEWP 90
Query: 96 EQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS---- 151
EQFPFKEEDF R+DESPD++FYE+PRFVTHIDDPAIAALTKYYS+VFPPSN+PGVS
Sbjct: 91 EQFPFKEEDFLRYDESPDTMFYESPRFVTHIDDPAIAALTKYYSKVFPPSNSPGVSILDM 150
Query: 152 ------HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 205
HFPPGY Q+R+VG+G+NEEELKRNPVLTEY+VQDLN+NP+LPFEDNSFD+ITNV
Sbjct: 151 CSSWVSHFPPGYSQERVVGLGLNEEELKRNPVLTEYIVQDLNVNPRLPFEDNSFDIITNV 210
Query: 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 265
VSVDY+TKP++VFKEM ++LKPGGLAI+SFSNRCFWTKAISIWTSTGDADHVMIVG+YFH
Sbjct: 211 VSVDYITKPLDVFKEMSRILKPGGLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFH 270
Query: 266 YAGGYEPPQAVDISPNPGRSDPMYVVYSRKASTA 299
YAGG+EPPQAVDISPNPGRSDPMY+VYSRK STA
Sbjct: 271 YAGGFEPPQAVDISPNPGRSDPMYIVYSRKVSTA 304
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520871|ref|XP_003529083.1| PREDICTED: uncharacterized protein LOC100786557 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/311 (69%), Positives = 248/311 (79%), Gaps = 22/311 (7%)
Query: 1 MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFC 60
M N L L R LP + ++ ST LS V KK + R K RR+++GLG +F
Sbjct: 1 MTNFVGLRLHTRLPLPVLGDVSATATSTTLS--RAVLKKWNWR-VKGPRRMLLGLGVSFL 57
Query: 61 SQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYE 118
S MAG+ S IA AR +V+++LK+V+WP+QFPFKEEDFQRFDE+PDSLFYE
Sbjct: 58 S----MAGS---KSFIALARITAGPSVDEILKNVEWPDQFPFKEEDFQRFDETPDSLFYE 110
Query: 119 TPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS----------HFPPGYKQDRIVGMGMN 168
PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVS HFP GYKQ+ +VG+GMN
Sbjct: 111 APRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSSWVSHFPSGYKQELVVGLGMN 170
Query: 169 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 228
EEELK NPVLTEY VQDLN+N KLPF DNSFD+ITNVVSVDYLTKP++VFKEMC++LKPG
Sbjct: 171 EEELKGNPVLTEYAVQDLNVNTKLPFADNSFDIITNVVSVDYLTKPLDVFKEMCRILKPG 230
Query: 229 GLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM 288
GLAI+SFSNRCFWTKAISIWTSTGDADHVMIVG+YFHYAGG+EPPQAVDISPNPGRSDPM
Sbjct: 231 GLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPM 290
Query: 289 YVVYSRKASTA 299
Y+VYSRK STA
Sbjct: 291 YIVYSRKLSTA 301
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501293|ref|XP_003620935.1| hypothetical protein MTR_6g092630 [Medicago truncatula] gi|355495950|gb|AES77153.1| hypothetical protein MTR_6g092630 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/271 (75%), Positives = 235/271 (86%), Gaps = 14/271 (5%)
Query: 43 RRFK-ASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQF 98
+ FK A RR+++G GA+ F S F+T G S IASA+ +V+Q+LK+V+WPEQF
Sbjct: 38 KTFKNAPRRMLLGFGASSFLSHFITNMSASGFKSFIASAKITAGPSVDQILKNVEWPEQF 97
Query: 99 PFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS------- 151
PFKEEDFQR+DES DS FYE+PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVS
Sbjct: 98 PFKEEDFQRYDESSDSTFYESPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSS 157
Query: 152 ---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208
HFPPGYKQ+R+VG+G+NEEELKRNPVLTEY VQDLN+NPKL FEDNSFDVITNVVSV
Sbjct: 158 WVSHFPPGYKQERVVGLGLNEEELKRNPVLTEYTVQDLNVNPKLSFEDNSFDVITNVVSV 217
Query: 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAG 268
DYLTKP+++FKEM ++LKPGGLAI+SFSNRCF+TKAISIWTSTGDADHVMIVG+YFHYAG
Sbjct: 218 DYLTKPLDIFKEMNRILKPGGLAIMSFSNRCFFTKAISIWTSTGDADHVMIVGSYFHYAG 277
Query: 269 GYEPPQAVDISPNPGRSDPMYVVYSRKASTA 299
G+EPPQAVDISPNPGRSDPMY+VYSRK +TA
Sbjct: 278 GFEPPQAVDISPNPGRSDPMYIVYSRKLATA 308
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388492332|gb|AFK34232.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/301 (69%), Positives = 246/301 (81%), Gaps = 15/301 (4%)
Query: 14 RLPPVSTGVSSG-YSTCLSCVSGVSKKSDCRRFK-ASRRLVVGLGAA-FCSQFMTMAGTL 70
RLP +S +S + ++ V S + FK A RR+++G GA+ F S F+T
Sbjct: 8 RLPVMSCHCASTPHPRTVNVVGSSSCSLLNKTFKNAPRRMLLGFGASSFLSHFITNMSAS 67
Query: 71 GANSLIASARQRG--AVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDD 128
G S IASA+ +V+Q+LK+V+WPEQFPFKEEDFQR+DES DS FYE+PRFVTHIDD
Sbjct: 68 GFKSFIASAKITAGPSVDQILKNVEWPEQFPFKEEDFQRYDESSDSTFYESPRFVTHIDD 127
Query: 129 PAIAALTKYYSEVFPPSNTPGVS----------HFPPGYKQDRIVGMGMNEEELKRNPVL 178
PAIAALTKYYS+VFPPSNTPGVS HFPPGYKQ+R+VG+G+NEEELKRNPVL
Sbjct: 128 PAIAALTKYYSKVFPPSNTPGVSILDMCSSWVSHFPPGYKQERVVGLGLNEEELKRNPVL 187
Query: 179 TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
TEY VQDLN+NPKL FEDNSFDVITNVVSVDYLTKP+++FKEM ++LKPGGLAI+SFSNR
Sbjct: 188 TEYTVQDLNVNPKLSFEDNSFDVITNVVSVDYLTKPLDIFKEMNRILKPGGLAIMSFSNR 247
Query: 239 CFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAST 298
CF+TKAISIWTSTGDADHVMIVG+YFHYAGG+EPPQAVDI PNPGRSDPMY+VYSRK +T
Sbjct: 248 CFFTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDIFPNPGRSDPMYIVYSRKLAT 307
Query: 299 A 299
A
Sbjct: 308 A 308
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799034|ref|XP_002867401.1| hypothetical protein ARALYDRAFT_491801 [Arabidopsis lyrata subsp. lyrata] gi|297313237|gb|EFH43660.1| hypothetical protein ARALYDRAFT_491801 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/303 (68%), Positives = 236/303 (77%), Gaps = 19/303 (6%)
Query: 15 LPPV--STGVSSGY--STCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMT--MAG 68
LPP+ STG S S+ L+ + SK R + RRLV+G G + S +M M+G
Sbjct: 15 LPPIFSSTGNSPFLRASSALNLPTAASKFHRWIRASSRRRLVLG-GFSGASLWMNNNMSG 73
Query: 69 TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
G S IASARQ VE+ L V WPE FPFKEEDFQRFDES DS FYE PRFVTHI
Sbjct: 74 NFGGKSFIASARQTNPSPVEEALNKVNWPETFPFKEEDFQRFDESSDSTFYEAPRFVTHI 133
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVS----------HFPPGYKQDRIVGMGMNEEELKRNP 176
DDP+IAALTKYYS+V P S+TPGVS H+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct: 134 DDPSIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 193
Query: 177 VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
VLTEY+VQDLNLNPKLPFEDNSF VITNVVSVDYLTKP+EVF+EM ++LKPGGLA++SFS
Sbjct: 194 VLTEYIVQDLNLNPKLPFEDNSFQVITNVVSVDYLTKPLEVFREMNRILKPGGLALMSFS 253
Query: 237 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKA 296
NRCF+TKAISIWTSTGD DH +IVG+YFHYAGG+E PQAVDISPNPGRSDPMYVVYSRK
Sbjct: 254 NRCFFTKAISIWTSTGDVDHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRKL 313
Query: 297 STA 299
A
Sbjct: 314 PMA 316
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233624|ref|NP_194688.1| methyltransferase [Arabidopsis thaliana] gi|5123553|emb|CAB45319.1| putative protein [Arabidopsis thaliana] gi|7269858|emb|CAB79717.1| putative protein [Arabidopsis thaliana] gi|332660249|gb|AEE85649.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/299 (69%), Positives = 231/299 (77%), Gaps = 18/299 (6%)
Query: 15 LPPV--STGVSSGY--STCLSCVSGVSKK-SDCRRFKASRRLVVG-LGAAFCSQFMTMAG 68
LPP+ STG S S+ L+ + SK R + RRLV+G G A M+G
Sbjct: 15 LPPIFSSTGNSPFLRASSALNLPTTASKPFHSWIRASSRRRLVLGGFGGASLWMNNNMSG 74
Query: 69 TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
G S IASARQ VEQ L V WPE FPFKEEDFQR+DES DS FYE PRFVTHI
Sbjct: 75 KFGGKSFIASARQTNPSPVEQALNKVDWPETFPFKEEDFQRYDESSDSTFYEAPRFVTHI 134
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVS----------HFPPGYKQDRIVGMGMNEEELKRNP 176
DDPAIAALTKYYS+V P S+TPGVS H+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct: 135 DDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 194
Query: 177 VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236
VLTEY+VQDLNLN LPFEDNSF VITNVVSVDYLTKP+EVFKEM ++LKPGGLA++SFS
Sbjct: 195 VLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEMNRILKPGGLALMSFS 254
Query: 237 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 295
NRCF+TKAISIWTSTGDADH +IVG+YFHYAGG+E PQAVDISPNPGRSDPMYVVYSRK
Sbjct: 255 NRCFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRK 313
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 299 | ||||||
| TAIR|locus:2134333 | 317 | AT4G29590 [Arabidopsis thalian | 0.842 | 0.794 | 0.743 | 1.8e-101 | |
| TAIR|locus:2084238 | 273 | AT3G01660 "AT3G01660" [Arabido | 0.618 | 0.677 | 0.392 | 5.2e-33 |
| TAIR|locus:2134333 AT4G29590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 197/265 (74%), Positives = 216/265 (81%)
Query: 44 RFKASRRLVVG-LGAAFCSQFMTMAGTLGANSLIASARQRGA--VEQVLKDVQWPEQFPF 100
R + RRLV+G G A M+G G S IASARQ VEQ L V WPE FPF
Sbjct: 49 RASSRRRLVLGGFGGASLWMNNNMSGKFGGKSFIASARQTNPSPVEQALNKVDWPETFPF 108
Query: 101 KEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS--------- 151
KEEDFQR+DES DS FYE PRFVTHIDDPAIAALTKYYS+V P S+TPGVS
Sbjct: 109 KEEDFQRYDESSDSTFYEAPRFVTHIDDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWV 168
Query: 152 -HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210
H+PPGY+Q+RIVGMGMNEEELKRNPVLTEY+VQDLNLN LPFEDNSF VITNVVSVDY
Sbjct: 169 SHYPPGYRQERIVGMGMNEEELKRNPVLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDY 228
Query: 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGY 270
LTKP+EVFKEM ++LKPGGLA++SFSNRCF+TKAISIWTSTGDADH +IVG+YFHYAGG+
Sbjct: 229 LTKPLEVFKEMNRILKPGGLALMSFSNRCFFTKAISIWTSTGDADHALIVGSYFHYAGGF 288
Query: 271 EPPQAVDISPNPGRSDPMYVVYSRK 295
E PQAVDISPNPGRSDPMYVVYSRK
Sbjct: 289 EAPQAVDISPNPGRSDPMYVVYSRK 313
|
|
| TAIR|locus:2084238 AT3G01660 "AT3G01660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 75/191 (39%), Positives = 106/191 (55%)
Query: 96 EQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNT------PG 149
++ E + + PD FY PRFV H+DD I++LT+ Y P +T
Sbjct: 46 QRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDSFISSLTELYRNRLRPGSTVLDLMSSW 105
Query: 150 VSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209
VSH P K +++VG G+N +EL RNP L + V+DLN + K FED FD + V V
Sbjct: 106 VSHLPEEVKYEKVVGHGLNAQELARNPRLDYFFVKDLNEDQKFEFEDKYFDAVLCSVGVQ 165
Query: 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGG 269
YL +P +VF E+ +VLKPGG+ IVSFSNR F+ KAI +W + + +V YF G
Sbjct: 166 YLQQPEKVFAEVYRVLKPGGVLIVSFSNRMFYEKAIRVWRDGTEYSRIQLVVQYFQSIEG 225
Query: 270 YEPPQAVDISP 280
+ P+ + P
Sbjct: 226 FTQPEIIRQQP 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 299 299 0.00095 115 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 610 (65 KB)
Total size of DFA: 225 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 24.99u 0.09s 25.08t Elapsed: 00:00:02
Total cpu time: 24.99u 0.09s 25.08t Elapsed: 00:00:03
Start: Thu May 9 15:07:42 2013 End: Thu May 9 15:07:45 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00016580001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (315 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 299 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 4e-11 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-10 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 6e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 4e-07 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-06 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 1e-05 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 5e-05 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-04 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 2e-04 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 3e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 7e-04 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.003 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.004 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-11
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233
++VV D LPF D SFDV+ + + + +L P +E+ +VLKPGG ++
Sbjct: 42 KFVVGDAE---DLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 173 KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LA 231
K+ E+VV D LPF DNSFD +T + +T + KEM +VLKPGG L
Sbjct: 97 KKGVQNVEFVVGDAE---NLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153
Query: 232 IVSFSNRC-FWTKAISIW 248
++ FS + I
Sbjct: 154 VLEFSKPDNPVLRKAYIL 171
|
Length = 238 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 13/53 (24%)
Query: 191 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
LPF DNSFD +T NV +D + +EM +VLKPGG L I+ FS
Sbjct: 114 ALPFPDNSFDAVTIAFGLRNVPDID------KALREMYRVLKPGGRLVILEFS 160
|
Length = 239 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 161 RIVGMGMNEE------ELKRNPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212
+VG+ ++EE E + E++ D+ P+L EDNSFDV+ + +++L
Sbjct: 30 EVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLP 89
Query: 213 KPIEVFKEMCQVLKPGGLAIVS 234
P +V +E+ +VLKPGG+ IVS
Sbjct: 90 DPDKVLEEIIRVLKPGGVLIVS 111
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 19/83 (22%)
Query: 191 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSN-RCFWT 242
LPFEDNSFD +T NV D + +EM +VLKPGG L I+ FS
Sbjct: 99 ALPFEDNSFDAVTIAFGLRNV--TDIQ----KALREMYRVLKPGGRLVILEFSKPANALL 152
Query: 243 KAISIWTSTGDADHVM-IVGAYF 264
K + +V+ +G
Sbjct: 153 KKFYKFYLK----NVLPSIGGLI 171
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 165 MGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQV 224
GM + + +++ D KLP ED+SFD+I + +++ + + E+ +V
Sbjct: 68 AGMLAQAKTKLSENVQFICGDAE---KLPLEDSSFDLIVSNLALQWCDDLSQALSELARV 124
Query: 225 LKPGGLAIVS 234
LKPGGL S
Sbjct: 125 LKPGGLLAFS 134
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 169 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFD-VITNVVSVDYLTKP--IEVFKEMCQVL 225
+E L+ +VV D LPFE+ SFD VI +S+DYL+ + +E ++L
Sbjct: 37 KERLRDKGPKVRFVVADAR---DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLL 93
Query: 226 KPGG 229
+PGG
Sbjct: 94 RPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 12/45 (26%)
Query: 191 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG 229
+LPF+DNSFD +T NV DY+ V +EM +V+KPGG
Sbjct: 107 ELPFDDNSFDYVTIGFGLRNVP--DYMQ----VLREMYRVVKPGG 145
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 13/53 (24%)
Query: 191 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
+LPFED+SFD++T N DYL V KE +VLKPGG + + FS
Sbjct: 109 ELPFEDDSFDIVTISFGLRNF--PDYLK----VLKEAFRVLKPGGRVVCLEFS 155
|
Length = 233 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 25/46 (54%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 192 LPFEDNSFDVI-TNVV---SVDYLTKPIEVFKEMCQVLKPGG-LAI 232
LP DNS DVI +N V S D K VFKE +VLKPGG AI
Sbjct: 140 LPVADNSVDVIISNCVINLSPD---KE-RVFKEAFRVLKPGGRFAI 181
|
Length = 272 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234
LPF D SFD + + + +L P E+ +VL+PGG +V
Sbjct: 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123
|
Length = 241 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 173 KRNPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 231
K++P+L EY + + + SFDV+T + ++++ P + Q+LKPGG+
Sbjct: 88 KKDPLLKIEYRCTSVEDLAEKGAK--SFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL 145
Query: 232 IVSFSNRCFWTKAISIW 248
S NR + ++I
Sbjct: 146 FFSTINRTPKSYLLAIV 162
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 40.3 bits (91), Expect = 7e-04
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 170 EELKRNPVLTEYVVQDLNLNPKLPFED-NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 228
+ + V L LPFED SFD++ + V +L P + +E+ +VLKPG
Sbjct: 90 ARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLPPAKALRELLRVLKPG 148
Query: 229 GLAIVSFSNR 238
G ++S R
Sbjct: 149 GRLVLSDLLR 158
|
Length = 257 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 173 KRNPVLTEYV---VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 229
+ V +Y V+DL FDV+T + ++++ P + +++KPGG
Sbjct: 102 LESGVNIDYRQATVEDLA------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG 155
Query: 230 LAIVSFSNRCF--WTKAIS 246
+ +S NR + AI
Sbjct: 156 ILFLSTINRTLKAYLLAII 174
|
Length = 243 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.004
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 169 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFD-VITNVVSVDYLTKPIEVFKEMCQVLKP 227
+ E + D P P D SFD +I++ + +E ++LKP
Sbjct: 39 KAAAALLADNVEVLKGDAEELP--PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKP 96
Query: 228 GGLAIVSF 235
GG+ +++
Sbjct: 97 GGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 299 | |||
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.82 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.82 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.79 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.78 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.76 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.75 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.74 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.73 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.71 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.7 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.68 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.68 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.68 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.67 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.65 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.63 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.62 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.61 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.61 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.61 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.6 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.6 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.6 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.59 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.58 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.57 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.56 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.56 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.56 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.55 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.53 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.52 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.52 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.52 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.51 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.49 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.48 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.47 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.47 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.46 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.44 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.44 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.44 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.42 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.41 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.41 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.41 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.4 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.4 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.39 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.38 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.37 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.33 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.32 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.32 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.32 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.32 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.3 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.29 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.28 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.28 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.28 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.28 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.28 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.27 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.26 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.24 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.23 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.22 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.22 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.15 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.14 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.14 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.14 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.14 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.13 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.13 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.12 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.11 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.1 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.1 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.1 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.08 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.07 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.06 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.06 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.05 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.03 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.03 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.03 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.02 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.98 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.96 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.96 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.96 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.95 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.94 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.92 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.91 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.88 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.86 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.85 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.84 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.83 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.8 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.79 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.79 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.77 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.77 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.75 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.75 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.74 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.73 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.73 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.72 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.68 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.66 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.66 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.63 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.63 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.62 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.61 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.61 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.61 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.6 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.6 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.59 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.57 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.55 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.53 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.52 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.5 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.5 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.49 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.48 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.47 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.45 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.44 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.43 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.42 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.4 | |
| PLN02366 | 308 | spermidine synthase | 98.39 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.38 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.36 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.33 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.31 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.3 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.18 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.15 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.12 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.11 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.09 | |
| PLN02476 | 278 | O-methyltransferase | 98.07 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.07 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.07 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.04 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.03 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.03 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.93 | |
| PLN02823 | 336 | spermine synthase | 97.92 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.91 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.9 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.89 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.89 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.89 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.88 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.86 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.85 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.84 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.83 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.81 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.78 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.77 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.76 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.76 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.69 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.69 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.6 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.59 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.52 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.51 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.51 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.51 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.49 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.48 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.45 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.42 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.37 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.36 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 97.35 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.34 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.33 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.31 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.24 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.23 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.22 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.22 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.21 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.2 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.19 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.19 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.16 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.09 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.06 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.01 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.99 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.95 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.83 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.76 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.67 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.58 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.53 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.44 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.42 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.34 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.29 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.21 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.2 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.19 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.11 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.03 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.89 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.88 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.86 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 95.83 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.83 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 95.67 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.34 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.3 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.17 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.04 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.69 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.54 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.35 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.0 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.94 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.92 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 93.67 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.59 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 93.59 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.56 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.14 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.13 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 92.56 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 92.55 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 92.38 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.09 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 92.04 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 91.99 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.98 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 90.7 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 90.43 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 90.13 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 89.92 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.45 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.36 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 86.96 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 86.69 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.52 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 85.11 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 84.84 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 84.68 | |
| PRK13699 | 227 | putative methylase; Provisional | 84.59 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 84.51 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.39 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 83.61 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 83.51 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 82.71 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 82.59 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 81.4 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 81.23 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 81.2 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 80.71 | |
| PHA01634 | 156 | hypothetical protein | 80.19 |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=174.66 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=117.7
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.+|||+|||+|.........+.+|+|||+|++|++.|++ +++++++|+ +++++++++||+|+|..+++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhhccCCCCEEEEhhHHH
Confidence 479999999997444444467899999999999997753 367889998 88888889999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCcchHH--------HHHHhhhhcCCCchh-----hhHHHHHHHhCCCCCCeee
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWT--------KAISIWTSTGDADHV-----MIVGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~aGF~~v~~~ 276 (299)
|+.|+..+++++.++|||||.+++++.+..... +.+..|...+..... .-+...+ +.+||+.+++.
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL-~~aGf~i~~~~ 288 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMIL-QRASVDVKEMA 288 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHH-HHcCCeEEEEe
Confidence 999999999999999999999999988865321 112233332211111 1122233 56999999998
Q ss_pred ecCCCC--------CCCCCeEEEEEEecCC
Q 022305 277 DISPNP--------GRSDPMYVVYSRKAST 298 (299)
Q Consensus 277 ~~~~~~--------~~~~p~~~v~arK~~~ 298 (299)
.+...| ...+-.|++.|.|+++
T Consensus 289 G~~~~p~~~~w~~~~~~~~ny~~~~~k~~~ 318 (322)
T PLN02396 289 GFVYNPITGRWLLSDDISVNYIAYGTKRKD 318 (322)
T ss_pred eeEEcCcCCeEEecCCCceeehhheecCcc
Confidence 886554 2356779999999876
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=165.28 Aligned_cols=99 Identities=31% Similarity=0.453 Sum_probs=85.3
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+ ....+.++|+|+|+|+.||+.++++ ++|+++|+ ++|||+|++||+|++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA---e~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA---ENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech---hhCCCCCCccCEEEeee
Confidence 46899999999997333 3333468999999999999988763 66999999 99999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEE-EEEecCc
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSNR 238 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~l-ii~~~~~ 238 (299)
+|++++|++++|+|++|||||||.+ ++++..+
T Consensus 128 glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 128 GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 9999999999999999999999955 5566553
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=161.61 Aligned_cols=99 Identities=27% Similarity=0.420 Sum_probs=71.7
Q ss_pred hcCCceeeccCcCCccc--cCCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|||+|||+|... +... .+..+|+|+|+|++||+.+++ +++++++|+ +++||++++||+|+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHhcCCCCceeEEEH
Confidence 34569999999999633 3332 245799999999999998765 478999999 999999999999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEE-EEecC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAI-VSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~li-i~~~~ 237 (299)
.+++++++|+.++++|++|+|||||.++ +++..
T Consensus 123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 123 SFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 9999999999999999999999999665 45544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-19 Score=157.77 Aligned_cols=157 Identities=16% Similarity=0.249 Sum_probs=117.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||.|....+.+..+++|+|+|+|+.+++.|+.. +++..... +++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~---edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV---EDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH---HHHHhcCCCccEEEEhhHHH
Confidence 346899999999987777777789999999999999988753 55777777 67766668999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHH--------HhhhhcCCCchhhhHHH--HHH--HhCCCCCCeeee
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI--------SIWTSTGDADHVMIVGA--YFH--YAGGYEPPQAVD 277 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~--~~aGF~~v~~~~ 277 (299)
|++||..+++++.+.+||||.+++++.|+.+..... -.|...+-...-.++.+ ... ..+|+...+...
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g 215 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKG 215 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecc
Confidence 999999999999999999999999999976543322 22433332221122222 111 446788777777
Q ss_pred cCCCC--------CCCCCeEEEEEEec
Q 022305 278 ISPNP--------GRSDPMYVVYSRKA 296 (299)
Q Consensus 278 ~~~~~--------~~~~p~~~v~arK~ 296 (299)
+..+| ...+-.|.+.++|+
T Consensus 216 ~~y~p~~~~~~l~~~~~vNy~~~~~~~ 242 (243)
T COG2227 216 LTYNPLTNSWKLSNDVSVNYMVHAQRP 242 (243)
T ss_pred eEeccccceEEecCCccceEEEEeecC
Confidence 76554 34567799999886
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=155.30 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=81.8
Q ss_pred cCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+|||+|||+|..... ... +..+|+|+|+|++|++.|++ +++++++|+ +.+|+++++||+|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~lp~~~~sfD~V 149 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDLPFDDCYFDAI 149 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccCCCCCCCEeEE
Confidence 346899999999963332 222 34699999999999997743 367899999 8999999999999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++++++|++|+.++++|++|+|||||.+++...
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999999999999999998877643
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-19 Score=135.75 Aligned_cols=89 Identities=27% Similarity=0.418 Sum_probs=73.8
Q ss_pred eeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 142 FPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 142 LDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
||+|||.|...... ..++.+++|+|+|++|++.+++. +.+..+|. +.+|+++++||+|++..+++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhCccccccccccccccceeeccCHH
Confidence 79999999622222 22589999999999999987763 45999999 89999999999999999999999999
Q ss_pred HHHHHHHhhccCCcEEEE
Q 022305 216 EVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii 233 (299)
++++|++|+|||||.++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999886
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=156.12 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=81.6
Q ss_pred cCCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|....... ..+.+|+|+|+|+.|++.+++ +++++++|+ .++|+++++||+|++..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccCCCCCCCccEEEECC
Confidence 34689999999996333222 126899999999999987653 378999999 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++|++|+.+++++++|+|||||.++|..
T Consensus 195 ~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999999999999999988864
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=151.81 Aligned_cols=125 Identities=16% Similarity=0.308 Sum_probs=99.2
Q ss_pred hccccHHHHHHhhh-cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCC
Q 022305 123 VTHIDDPAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNS 198 (299)
Q Consensus 123 ~~~l~~~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~ 198 (299)
.....+.+++.+.. ...+|||+|||+|.........+.+++|+|+|+.|++.++++ ..++++|+ +.+|+++++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~~~~~~~ 103 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI---ESLPLATAT 103 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccCcCCCCc
Confidence 33344445555543 457899999999963332233468999999999999988765 57899999 889999999
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhh
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS 250 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~ 250 (299)
||+|+++.+++|++|+..+|+++.|+|||||.++++......+.+....|..
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999987776666665555544
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-18 Score=151.58 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=81.1
Q ss_pred CCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 138 YSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
..+|||+|||+|......... +.+|+|+|+|++|++.|+++..++++|+ +.+|+++++||+|++.++++|++|+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~---~~lp~~d~sfD~v~~~~~l~~~~d~~~ 128 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSF---EALPFRDKSFDVVMSSFALHASDNIEK 128 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEech---hhCCCCCCCEEEEEecChhhccCCHHH
Confidence 579999999999633322212 5799999999999999988778899999 899999999999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEEecC
Q 022305 217 VFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++|+|||. ..++++..
T Consensus 129 ~l~e~~RvLkp~-~~ile~~~ 148 (226)
T PRK05785 129 VIAEFTRVSRKQ-VGFIAMGK 148 (226)
T ss_pred HHHHHHHHhcCc-eEEEEeCC
Confidence 999999999994 33555544
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-18 Score=141.54 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=96.9
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHH
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~ 215 (299)
....+|||+|||.|.........+.+++|+|+|+.|++. ........+. ...+.++++||+|+|+.+++|++|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~~~d~~ 95 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDA---QDPPFPDGSFDLIICNDVLEHLPDPE 95 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEEC---HTHHCHSSSEEEEEEESSGGGSSHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhh---hhhhccccchhhHhhHHHHhhcccHH
Confidence 456799999999996333223345699999999999998 4455555555 45567789999999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEecCcc-hHHHHHHhhhhcCCC-chhhhHH-----HHHHHhCCCCCCe
Q 022305 216 EVFKEMCQVLKPGGLAIVSFSNRC-FWTKAISIWTSTGDA-DHVMIVG-----AYFHYAGGYEPPQ 274 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~aGF~~v~ 274 (299)
.+|+++.++|||||++++++++.. ........|...... .|..++. ..+ +.+||+.++
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~G~~iv~ 160 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL-EQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH-HHTTEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH-HHCCCEEEE
Confidence 999999999999999999988753 344444555332211 3333322 233 669998765
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=149.04 Aligned_cols=155 Identities=18% Similarity=0.229 Sum_probs=111.1
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||+|...+ ....+..+++|+|+|++|++.+++ +++++.+|+ +.+++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~---e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA---EDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccH---HhCCCCCCceeEEEEcChhh
Confidence 34689999999996332 233355799999999999998765 378899999 88999999999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEec-CcchHHHHH--HhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC----
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFS-NRCFWTKAI--SIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 282 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~---- 282 (299)
|++++..+|++++|+|||||.+++..+ ....+.... ..|... ....-+.+++ +++||+.+++.++.+.-
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~---~t~eEl~~lL-~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLF---PKEEEYIEWF-TKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccC---CCHHHHHHHH-HHCCCeEEEEEEcChhhcccc
Confidence 999999999999999999998876533 232222211 122211 1112233344 56999999998886542
Q ss_pred --CCCCCeEEEEEEecCC
Q 022305 283 --GRSDPMYVVYSRKAST 298 (299)
Q Consensus 283 --~~~~p~~~v~arK~~~ 298 (299)
.+.-.-+.|.++|++.
T Consensus 266 ~~~~~~~~~~v~~~k~~~ 283 (340)
T PLN02490 266 RRHGLIMGCSVTGVKPAS 283 (340)
T ss_pred ccccceeeEEEEEecccc
Confidence 1112237789999864
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-17 Score=144.95 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=85.9
Q ss_pred HHHHhh-hcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+++.+. ....+|||+|||+|.. .+....++.+|+|+|+|+.|++.+++ .++++++|+ +.++ ++++||+|+|+
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---~~~~-~~~~fD~v~~~ 96 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV---RDWK-PKPDTDVVVSN 96 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh---hhCC-CCCCceEEEEe
Confidence 445543 3457899999999972 33333457899999999999998876 488999999 6664 56799999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++||++|+.+++++++++|||||.+++.++.
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99999999999999999999999999988654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=138.12 Aligned_cols=96 Identities=23% Similarity=0.356 Sum_probs=80.6
Q ss_pred CCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|... +.... +..+++|+|+|++|++.+++ +++++.+|. +.+++++++||+|++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcCCCCCCCccEEEEec
Confidence 468999999999633 22222 45799999999999987654 367888998 78888889999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++|++++.++++++.++|||||.+++...
T Consensus 123 ~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 999999999999999999999998877543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=143.25 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=101.0
Q ss_pred hcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+...+|||+|||.|...... ...+++|+|+|+|+.|++.+++ ++.++.+|+ ...|+++++||+|++..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~---~~~~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI---LKKDFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc---ccCCCCCCCeEEEEEhhhH
Confidence 34568999999999633222 2236799999999999987664 377888998 7889999999999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHHhhhhcC--CCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTSTG--DADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
+|++ ++..++++++++|||||.+++..... ..+......+.... .......+.+.+ +++||+.++..++++
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLI-KSCNFQNVVAKDISD 205 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCCeeeEEeCcH
Confidence 9986 88999999999999999998875432 12222222221111 111222333444 569999999988754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-18 Score=146.10 Aligned_cols=198 Identities=20% Similarity=0.219 Sum_probs=132.3
Q ss_pred ccCCCCCCC--CChHHHhhccCCCccc-----ccCcchhhccccHHHHHHh-hhcCCceeeccCcCCccccCCCCCCCeE
Q 022305 91 DVQWPEQFP--FKEEDFQRFDESPDSL-----FYETPRFVTHIDDPAIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRI 162 (299)
Q Consensus 91 ~~~w~~~~p--~~~~~~~~~d~~~~~~-----~y~~~~~~~~l~~~~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v 162 (299)
...-|+..| |-+..|+.|.+..+.. -|+.|.+. .+.+... ...|.++||+|||+|..-....-...++
T Consensus 75 ~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l----~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~l 150 (287)
T COG4976 75 RGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSVPELL----AEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRL 150 (287)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccHHHH----HHHHHhccCCccceeeecccCcCcccHhHHHHHhhc
Confidence 334444444 6788999998877654 22222221 2223333 2358899999999996444444345789
Q ss_pred EEEeCCHHHHHhcCCC---CcEEEeccCCCC-CCC-CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 163 VGMGMNEEELKRNPVL---TEYVVQDLNLNP-KLP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 163 ~gvD~S~~ml~~a~~~---~~~~~~D~~~~~-~lp-f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+|||++|+++|.++ -...++|+ . -++ ..++.||+|++..|+.|+.+++.++.-+...|+|||+|.|++-.
T Consensus 151 tGvDiS~nMl~kA~eKg~YD~L~~Aea---~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 151 TGVDISENMLAKAHEKGLYDTLYVAEA---VLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred cCCchhHHHHHHHHhccchHHHHHHHH---HHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 9999999999999876 33455555 2 222 45678999999999999999999999999999999999999765
Q ss_pred cchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCC--CCeEEEEEEecC
Q 022305 238 RCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRS--DPMYVVYSRKAS 297 (299)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~--~p~~~v~arK~~ 297 (299)
-+.+... .......+.|-.-+-+....+.||+.+++.+++-..... -|-..|+|||+.
T Consensus 228 l~~~~~f--~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 228 LPDDGGF--VLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred cCCCCCe--ecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 3322110 011112223332222223366999999999987664333 455899999974
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-17 Score=148.03 Aligned_cols=107 Identities=16% Similarity=0.269 Sum_probs=86.7
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-CCCCCe
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSF 199 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f~~~~F 199 (299)
+++.+.....+|||+|||+|.........+.+|+|+|+|++|++.|++ +++++++|+ ..++ +.+++|
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~---~~l~~~~~~~f 113 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA---QDIAQHLETPV 113 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH---HHHhhhcCCCC
Confidence 334444445689999999997544444457899999999999998764 257888888 5553 667899
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
|+|++..+++|+.++..+++++.++|||||.+++.+.+..
T Consensus 114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 9999999999999999999999999999999988877643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=140.19 Aligned_cols=107 Identities=26% Similarity=0.378 Sum_probs=86.1
Q ss_pred HHHHHh-hhcCCceeeccCcCCccccCC--------CCCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCC
Q 022305 129 PAIAAL-TKYYSEVFPPSNTPGVSHFPP--------GYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNL 188 (299)
Q Consensus 129 ~~~~~l-~~~~~~vLDiGcG~G~~~~~~--------~~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~ 188 (299)
.+...+ .....++||++||+|...+.. .....+|+.+|+|++||+.++++ +.|+++|+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA-- 168 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA-- 168 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc--
Confidence 344555 234579999999999633321 11237999999999999866542 67899999
Q ss_pred CCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEE-EEEecCc
Q 022305 189 NPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSNR 238 (299)
Q Consensus 189 ~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~l-ii~~~~~ 238 (299)
+.|||++++||..++.+.+.++.|++++|+|++|||||||.| +++|+..
T Consensus 169 -E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 169 -EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred -ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 999999999999999999999999999999999999999965 5667653
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=136.08 Aligned_cols=103 Identities=22% Similarity=0.384 Sum_probs=86.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
.+|||+|||+|. ..+....+..+++|+|+|+.+++.+++ +++++.+|+ +.+++++++||+|++..+++|+.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDA---EKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecch---hhCCCCCCceeEEEEhhhhhhcc
Confidence 589999999995 333444456789999999999987655 368999999 78888889999999999999999
Q ss_pred CHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
++..+++++.++|||||.+++..+......+.
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~ 144 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHEL 144 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHH
Confidence 99999999999999999999987765544443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-16 Score=146.62 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=94.9
Q ss_pred CCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhc---------CCCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a---------~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|........ ....|+|+|+|+.|+.++ ..+++++.+|+ +.+|+ +++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~---e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI---EQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH---HHCCC-cCCcCEEEECCh
Confidence 36899999999974332222 234699999999988642 12478899999 88888 788999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecC---cc---h-HHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RC---F-WTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++|+.|+..+|++++++|||||.++++... .. . ....+..+....-......+...+ +++||+.+++++.++
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L-~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWL-ERAGFKDVRIVDVSV 277 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHH-HHcCCceEEEEeCCC
Confidence 999999999999999999999999987421 11 1 111111111000000111223333 669999999988754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-16 Score=149.77 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=98.4
Q ss_pred cCCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|..... ....+.+++|+|+|+.|++.|++ ++++.++|+ ..+++++++||+|+|..++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~~~l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSRDTI 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEECCcc
Confidence 346899999999963221 12236799999999999987754 367899999 7788888999999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcc--hHHHHHH-hhhhcC-CCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAIS-IWTSTG-DADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~--~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
+|++|+..++++++|+|||||.++++..... .....+. .+...+ .......+.+.+ ..+||+.+++.+.
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l-~~aGF~~i~~~d~ 415 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML-KDAGFDDVIAEDR 415 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCeeeeeecc
Confidence 9999999999999999999999988754321 1111111 111111 112223333333 5699999877764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=140.70 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=93.2
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcC---------CCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNP---------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~---------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|.........+ ..|+|+|+|+.|+.+++ .++.+...++ +.++.. ++||+|+|+.+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i---e~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI---EQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH---HHCCCC-CCcCEEEEcch
Confidence 3689999999996333222223 47999999999986431 2356777888 777764 47999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCc------ch-HHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR------CF-WTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++|++++..+|++++|+|||||.+++++... .. ....+.......-......+..++ +++||+.+++++...
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L-~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWL-EKVGFENFRILDVLK 276 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHH-HHCCCeEEEEEeccC
Confidence 9999999999999999999999999874311 00 011111111100001122233344 569999999988754
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=135.28 Aligned_cols=136 Identities=15% Similarity=0.252 Sum_probs=94.1
Q ss_pred CCCCCCCCChHHHhhccCCCcc--cccCcchhhccccHHHHHHhhhcCCceeeccCcCCcccc--CC--CCCCCeEEEEe
Q 022305 93 QWPEQFPFKEEDFQRFDESPDS--LFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSHF--PP--GYKQDRIVGMG 166 (299)
Q Consensus 93 ~w~~~~p~~~~~~~~~d~~~~~--~~y~~~~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~--~~--~~~~~~v~gvD 166 (299)
.|+..|-|.+.....|+..... -.|.. +...+ ..+.+.+.....+|||+|||+|.... .. ..++.+++|+|
T Consensus 10 ~~~~~~~~~~~~a~~y~~~~~~~~p~y~~--~~~~~-~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD 86 (239)
T TIGR00740 10 AKLGDFIFDENVAEVFPDMIQRSVPGYSN--IITAI-GMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGID 86 (239)
T ss_pred cccCCCccChHHHHhCcchhhccCCCHHH--HHHHH-HHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEe
Confidence 5666665665555566653321 11221 22222 11223333345689999999997332 22 23578999999
Q ss_pred CCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 167 MNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 167 ~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+|+.|++.|++ +++++++|+ ..++++ .+|+|++..++||++ ++..++++++|+|||||.+++..
T Consensus 87 ~s~~ml~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 87 NSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99999987754 257889999 777765 489999999999996 46789999999999999998874
Q ss_pred c
Q 022305 236 S 236 (299)
Q Consensus 236 ~ 236 (299)
+
T Consensus 162 ~ 162 (239)
T TIGR00740 162 K 162 (239)
T ss_pred c
Confidence 3
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-16 Score=135.60 Aligned_cols=137 Identities=17% Similarity=0.257 Sum_probs=100.4
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.+|||+|||+|....+....++.|+|||+++.|++.|++. +++...|+ +.+ .+.||+|+|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EGL---TGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hhc---ccccceeee
Confidence 4699999999987777777789999999999999988763 33444455 333 244999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcch--------HHHHHHhhhhcCCCchhhhHHH-----HHHHhCCCC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF--------WTKAISIWTSTGDADHVMIVGA-----YFHYAGGYE 271 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~aGF~ 271 (299)
+.+++|+.||..++..+.+.|||||.++|++.|+.. +.+....|...+......|+.. .+ ..+|+.
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l-~~~~~~ 243 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL-NANGAQ 243 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH-HhcCcc
Confidence 999999999999999999999999999999888643 3444444444443322233332 33 446788
Q ss_pred CCeeeecCCCC
Q 022305 272 PPQAVDISPNP 282 (299)
Q Consensus 272 ~v~~~~~~~~~ 282 (299)
...+.+.-..|
T Consensus 244 v~~v~G~~y~p 254 (282)
T KOG1270|consen 244 VNDVVGEVYNP 254 (282)
T ss_pred hhhhhcccccc
Confidence 77776665554
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=127.95 Aligned_cols=137 Identities=20% Similarity=0.358 Sum_probs=97.9
Q ss_pred CceeeccCcCCccc-cCCCCCCCeEEEEeCCHHHHHhcCC--------CCc-EEEeccCCCCCCC-CCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSH-FPPGYKQDRIVGMGMNEEELKRNPV--------LTE-YVVQDLNLNPKLP-FEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~-~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~-~~~~D~~~~~~lp-f~~~~FD~Vis~~~ 207 (299)
..+|++|||+|... +..-.++.+|+++|+|+.|-+.+.+ +++ |++++. +++| ++++++|+|++..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCCeeeEEEEEE
Confidence 45799999999732 3333478999999999999886543 244 899999 8998 89999999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHH-----hhhhcCCCchh-hhHHHHHHHhCCCCCCeeeec
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAIS-----IWTSTGDADHV-MIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~aGF~~v~~~~~ 278 (299)
|+...|+.+.|+|+.|+|||||.+++-.... .+|..... .|.-..+-.+. +-.++.+ ..+-|+.++....
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~L-eda~f~~~~~kr~ 233 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELL-EDAEFSIDSCKRF 233 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHh-hhcccccchhhcc
Confidence 9999999999999999999999877754332 23333222 23332332332 2233444 3466887776555
Q ss_pred C
Q 022305 279 S 279 (299)
Q Consensus 279 ~ 279 (299)
+
T Consensus 234 ~ 234 (252)
T KOG4300|consen 234 N 234 (252)
T ss_pred c
Confidence 4
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-15 Score=129.21 Aligned_cols=138 Identities=22% Similarity=0.340 Sum_probs=98.6
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|... +.... +.++++|+|+|+.+++.++++ ++++..|+ ..+++++++||+|++..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccCCCCCCCceEEEEec
Confidence 3468999999999632 22222 467999999999999876543 77888898 77888889999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc----------chHHHHHHhhhhcCCCch-hhhHHHHHHHhCCCCCCee
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR----------CFWTKAISIWTSTGDADH-VMIVGAYFHYAGGYEPPQA 275 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aGF~~v~~ 275 (299)
+++|+.++..+++++.++|||||.+++..+.. ....+....|........ ...+.+.+ ..+||+.+++
T Consensus 96 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~ 174 (241)
T PRK08317 96 VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF-REAGLTDIEV 174 (241)
T ss_pred hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHcCCCceeE
Confidence 99999999999999999999999988865431 123333444443221111 12223333 5699998766
Q ss_pred eec
Q 022305 276 VDI 278 (299)
Q Consensus 276 ~~~ 278 (299)
...
T Consensus 175 ~~~ 177 (241)
T PRK08317 175 EPY 177 (241)
T ss_pred EEE
Confidence 443
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=136.53 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=85.1
Q ss_pred HHHHHhh-hcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 129 PAIAALT-KYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 129 ~~~~~l~-~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
.++..+. ....+|||+|||+|.. .+....++.+|+|+|+|+.|++.++++ ++++.+|+ ..+. ++++||+|
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v 97 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADI---ASWQ-PPQALDLI 97 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECch---hccC-CCCCccEE
Confidence 3444442 3457899999999963 333445678999999999999988764 67888998 5554 45689999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++.+++|++|+..+++++.++|||||.+++.++.
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99999999999999999999999999999998654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-16 Score=119.62 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=55.0
Q ss_pred eeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC------C--cEEEeccCCCCCCCC-CCCCeeEEEecccccc
Q 022305 142 FPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL------T--EYVVQDLNLNPKLPF-EDNSFDVITNVVSVDY 210 (299)
Q Consensus 142 LDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~------~--~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l~~ 210 (299)
||+|||+|. ..+....+..+++|+|+|+.|++.++++ . .....+.. ..... ..++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVL--DLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SS--S---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecC--ChhhcccccccceehhhhhHhh
Confidence 799999996 3333344678999999999999888775 1 22333321 11111 2269999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~l 231 (299)
++++..++++++++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999976
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-15 Score=126.68 Aligned_cols=96 Identities=25% Similarity=0.435 Sum_probs=81.3
Q ss_pred CCceeeccCcCCcccc--C-CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHF--P-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~-~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vis 204 (299)
-.+|||+|||+|.... . ...++.+++|+|+|++|++.|++ +++++++|+ .+++ ++ +.||+|++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~---~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI---EDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT---TCGCGCSS-TTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh---hccccccC-CCeeEEEE
Confidence 3689999999997332 2 23467899999999999998776 378999999 6676 66 88999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+++|+.++..+++++.++||+||.+++....
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999999999999999999887665
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=132.52 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=97.4
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|...+ ... .+..+|+|+|+|+.|++.+++ ++++..+|+ +.+++++++||+|+++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~---~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI---EALPVADNSVDVIISN 153 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch---hhCCCCCCceeEEEEc
Confidence 34699999999996322 211 234689999999999998765 367888999 8889988999999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEec--Ccc---hHHHHHHhhhhc-CCCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS--NRC---FWTKAISIWTST-GDADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~--~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
.+++|.++..+++++++|+|||||.+++... ... ........|... .......-+.+.+ +.+||..+++...
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l-~~aGf~~v~i~~~ 231 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAML-AEAGFVDITIQPK 231 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHH-HHCCCCceEEEec
Confidence 9999999999999999999999998887532 111 112222233221 1111222233344 5589999877543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-15 Score=134.52 Aligned_cols=96 Identities=14% Similarity=0.252 Sum_probs=77.6
Q ss_pred hhcCCceeeccCcCCcccc--CC--CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 135 TKYYSEVFPPSNTPGVSHF--PP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~--~~--~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
.....+|||+|||+|.... .. ..++.+++|+|+|+.|++.|++ +++++++|+ ..++++ .+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---RDIAIE--NASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh---hhCCCC--CCCE
Confidence 3445789999999997432 22 3467899999999999998754 377888998 777764 4899
Q ss_pred EEecccccccCC--HHHHHHHHHhhccCCcEEEEEe
Q 022305 202 ITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 202 Vis~~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|+++.++||+++ ...++++++++|||||.+++..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999999964 4689999999999999988863
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-15 Score=134.24 Aligned_cols=122 Identities=14% Similarity=0.301 Sum_probs=89.6
Q ss_pred CcccccCcchhhccccHHHHHHhhh-----cCCceeeccCcCCcc------ccCCC-----CCCCeEEEEeCCHHHHHhc
Q 022305 112 PDSLFYETPRFVTHIDDPAIAALTK-----YYSEVFPPSNTPGVS------HFPPG-----YKQDRIVGMGMNEEELKRN 175 (299)
Q Consensus 112 ~~~~~y~~~~~~~~l~~~~~~~l~~-----~~~~vLDiGcG~G~~------~~~~~-----~~~~~v~gvD~S~~ml~~a 175 (299)
..+.|+..+.....+.+.++..+.+ ...+|+|+|||+|.- .+... ..+.+|+|+|+|+.||+.|
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 3445666655555554444444421 235899999999951 11111 1246899999999999977
Q ss_pred CC-----------------------------------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHHH
Q 022305 176 PV-----------------------------------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVF 218 (299)
Q Consensus 176 ~~-----------------------------------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~l 218 (299)
++ .++|.+.|+ .+.++++++||+|+|.++++|++++ .+++
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l 225 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNL---LAESPPLGDFDLIFCRNVLIYFDEPTQRKLL 225 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccC---CCCCCccCCCCEEEechhHHhCCHHHHHHHH
Confidence 65 257888898 7777778899999999999999744 5799
Q ss_pred HHHHhhccCCcEEEEEec
Q 022305 219 KEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~~~ 236 (299)
++++++|||||++++...
T Consensus 226 ~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 226 NRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHhCCCeEEEEECc
Confidence 999999999999999743
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-15 Score=125.81 Aligned_cols=148 Identities=24% Similarity=0.282 Sum_probs=110.6
Q ss_pred cHHHHHHhhhcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC-CCCCCeeEEE
Q 022305 127 DDPAIAALTKYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVIT 203 (299)
Q Consensus 127 ~~~~~~~l~~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp-f~~~~FD~Vi 203 (299)
+-..+..+.+...+|||+|||.|. .......++.+..|+|++++.+..+-++ +.++++|++ +.|+ |++++||.||
T Consensus 3 D~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld--~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 3 DLQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD--EGLADFPDQSFDYVI 80 (193)
T ss_pred hHHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH--HhHhhCCCCCccEEe
Confidence 344567777778999999999997 2222333688999999999998877654 899999996 5665 9999999999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhh---------------hhcCCCchhhhHHHH--HHH
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW---------------TSTGDADHVMIVGAY--FHY 266 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~ 266 (299)
.+.+|+++.+|.++|+||.|+ |...|++|||..+|....... ..+. .-|+--+.++ +.+
T Consensus 81 lsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP-Nih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 81 LSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP-NIHLCTIKDFEDLCR 156 (193)
T ss_pred hHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC-CcccccHHHHHHHHH
Confidence 999999999999999999887 559999999988887765443 2221 1222223332 226
Q ss_pred hCCCCCCeeeecCC
Q 022305 267 AGGYEPPQAVDISP 280 (299)
Q Consensus 267 ~aGF~~v~~~~~~~ 280 (299)
..|++..+-.-+..
T Consensus 157 ~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 157 ELGIRIEERVFLDG 170 (193)
T ss_pred HCCCEEEEEEEEcC
Confidence 67888877666544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-15 Score=130.71 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=93.7
Q ss_pred ceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 140 EVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 140 ~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+|||+|||.|.. .+...+++.+++|+|+|+++++.+++ +++++..|. ...+++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~---~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS---AKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc---ccCCCC-CCCCEeehHHHH
Confidence 699999999962 33334456899999999999987665 257888888 555664 579999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCC
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN 281 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~ 281 (299)
+|++++..+|+++.++|||||.+++.......+...-..+.... .....-+.+.+ ..+||+.++..++.+.
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~l-~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSY-LVTREEWAELL-ARNNLRVVEGVDASLE 148 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccc-cCCHHHHHHHH-HHCCCeEEEeEECcHh
Confidence 99999999999999999999999887543221110000000000 00111122233 5589999988887653
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=121.16 Aligned_cols=176 Identities=16% Similarity=0.325 Sum_probs=118.8
Q ss_pred CCCCCCCChHHHhhccCCCcccccCcchhhccccHHHHHHhh---hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHH
Q 022305 94 WPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALT---KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEE 170 (299)
Q Consensus 94 w~~~~p~~~~~~~~~d~~~~~~~y~~~~~~~~l~~~~~~~l~---~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ 170 (299)
.|+-| |++.+..+|..+.....++ ..+.+..++.+. ....-|||||||+|.+.-.....+...+|+|||+.
T Consensus 10 Ppelf-Ynd~eA~kYt~nsri~~IQ-----~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps 83 (270)
T KOG1541|consen 10 PPELF-YNDTEAPKYTQNSRIVLIQ-----AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS 83 (270)
T ss_pred Cccee-echhhhhhccccceeeeeh-----HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHH
Confidence 34555 6777777777755543222 223344444442 12456999999999866655567789999999999
Q ss_pred HHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEecccccccC-------CH----HHHHHHHHhhccCCcEEEEEec
Q 022305 171 ELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT-------KP----IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 171 ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~-------d~----~~~l~ei~rvLkpGG~lii~~~ 236 (299)
||+.|.+. -+++.+|+. +-+||..++||.||+..+++|+- +| ..++..++.+|++|+..++.+-
T Consensus 84 ML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 84 MLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred HHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 99988753 468899986 88999999999999999998872 33 3578889999999999999864
Q ss_pred CcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEE
Q 022305 237 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYS 293 (299)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~a 293 (299)
..+. +.+..+.+.- ..+||.-=-+++.+.. ....-+|+|..
T Consensus 162 pen~--------------~q~d~i~~~a-~~aGF~GGlvVd~Pes-~k~kK~yLVL~ 202 (270)
T KOG1541|consen 162 PENE--------------AQIDMIMQQA-MKAGFGGGLVVDWPES-TKNKKYYLVLM 202 (270)
T ss_pred ccch--------------HHHHHHHHHH-HhhccCCceeeecccc-cccceeEEEEe
Confidence 3221 1111222211 3478887666665432 23345566653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-15 Score=117.52 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=74.1
Q ss_pred CceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 139 SEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
.+|||+|||+|...+.... ++.+++|+|+|++|++.+++ +++++++|+ ....-..+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA---EFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC---HGGTTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc---ccCcccCCCCCEEEECCC
Confidence 6899999999975444433 88999999999999987654 377888887 22333345699999999
Q ss_pred ccccc---CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 207 SVDYL---TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 207 ~l~~~---~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++++ ++..++++++.+.|||||+++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 456889999999999999999975
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-14 Score=131.21 Aligned_cols=100 Identities=18% Similarity=0.305 Sum_probs=76.9
Q ss_pred hhcCCceeeccCcCCcc--ccCCCCC---CCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 135 TKYYSEVFPPSNTPGVS--HFPPGYK---QDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~--~~~~~~~---~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
.....+|||+|||+|.. .+....+ ...++|+|+|+.|++.|++ ++.+.++|+ ..+|+++++||+|++..
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---HRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---ccCCCcCCceeEEEEec
Confidence 33446799999999962 2222222 2479999999999998865 378999999 88999999999999876
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
+. ..++|++|+|||||.+++..++.....+.
T Consensus 160 ~~-------~~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 160 AP-------CKAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred CC-------CCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 42 24689999999999999988776544443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=125.86 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.+++ ++++.+.|+ ..++++ ++||+|+|+.++|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL---NNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh---hhCCcC-CCcCEEEEecchh
Confidence 4689999999997544444457899999999999987654 267788888 666664 5799999999999
Q ss_pred ccC--CHHHHHHHHHhhccCCcEEEE
Q 022305 210 YLT--KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 210 ~~~--d~~~~l~ei~rvLkpGG~lii 233 (299)
|++ +...+++++.++|||||++++
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 886 578999999999999998544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-14 Score=130.70 Aligned_cols=168 Identities=15% Similarity=0.237 Sum_probs=107.3
Q ss_pred CCCChHHHhhccCCCcccccCcchhhccccHHHHHHhhh-cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhc
Q 022305 98 FPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRN 175 (299)
Q Consensus 98 ~p~~~~~~~~~d~~~~~~~y~~~~~~~~l~~~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a 175 (299)
-|+.+.-|..++..-|+.|.+.-.+ +.+...+.. ...+|||||||.|.-.+.....+ ..|+|+|.++....+.
T Consensus 80 ~PWRKGPf~l~gi~IDtEWrSd~KW-----~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 80 MPWRKGPFSLFGIHIDTEWRSDWKW-----DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQF 154 (315)
T ss_pred CCcccCCcccCCEeecccccccchH-----HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHH
Confidence 3456667777777777665544211 112222211 23689999999997555444445 4799999998765432
Q ss_pred C-------CCCcEEE--eccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC---c---ch
Q 022305 176 P-------VLTEYVV--QDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---R---CF 240 (299)
Q Consensus 176 ~-------~~~~~~~--~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~---~~ 240 (299)
. ....... .-+ +.+|. .+.||+|+|..||.|..+|...|++++..|+|||.+|+++.- . ..
T Consensus 155 ~~i~~~lg~~~~~~~lplgv---E~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L 230 (315)
T PF08003_consen 155 EAIKHFLGQDPPVFELPLGV---EDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL 230 (315)
T ss_pred HHHHHHhCCCccEEEcCcch---hhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE
Confidence 1 1122222 344 77777 789999999999999999999999999999999999987421 1 11
Q ss_pred HHHHHHhhhhcCCCchhhh------HHHHHHHhCCCCCCeeeecCC
Q 022305 241 WTKAISIWTSTGDADHVMI------VGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~aGF~~v~~~~~~~ 280 (299)
..+ ..+.....++| ...++ +.+||+.++++++++
T Consensus 231 ~P~-----~rYa~m~nv~FiPs~~~L~~wl-~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 231 VPE-----DRYAKMRNVWFIPSVAALKNWL-ERAGFKDVRCVDVSP 270 (315)
T ss_pred ccC-----CcccCCCceEEeCCHHHHHHHH-HHcCCceEEEecCcc
Confidence 111 01111112222 22344 569999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=115.70 Aligned_cols=70 Identities=29% Similarity=0.476 Sum_probs=63.2
Q ss_pred EEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEE
Q 022305 163 VGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 163 ~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~l 231 (299)
+|+|+|++||+.|++ +++++++|+ +++|+++++||+|++.++++|++|+.++|+|++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999997732 268999999 899999999999999999999999999999999999999988
Q ss_pred EEEe
Q 022305 232 IVSF 235 (299)
Q Consensus 232 ii~~ 235 (299)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 7653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=117.74 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=93.6
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+ ....++.+|+|+|+|+.|++.+++ +++++.+|+ ..++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~---~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA---EEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH---hhCCC-CCCccEEEEcc
Confidence 35789999999997333 334567899999999999987654 278899998 67776 77999999975
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
+.++..++++++++|||||.+++...... ... +. ...+..|+...+.....-+ |-..
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~-~~~----------------l~-~~~~~~~~~~~~~~~~~~~-~~~~ 177 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGRDP-EEE----------------IA-ELPKALGGKVEEVIELTLP-GLDG 177 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCCCh-HHH----------------HH-HHHHhcCceEeeeEEEecC-CCCC
Confidence 46789999999999999999887643211 000 01 1124457776666555443 3344
Q ss_pred CeEEEEEEec
Q 022305 287 PMYVVYSRKA 296 (299)
Q Consensus 287 p~~~v~arK~ 296 (299)
|-..++-||.
T Consensus 178 ~~~~~~~~~~ 187 (187)
T PRK00107 178 ERHLVIIRKK 187 (187)
T ss_pred cEEEEEEecC
Confidence 5566666663
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-14 Score=112.04 Aligned_cols=86 Identities=22% Similarity=0.437 Sum_probs=66.5
Q ss_pred eeeccCcCCcccc--C---CCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEec-cc
Q 022305 141 VFPPSNTPGVSHF--P---PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV-VS 207 (299)
Q Consensus 141 vLDiGcG~G~~~~--~---~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~-~~ 207 (299)
|||+|||+|.... . ...+..+++|+|+|++|++.++++ ++++++|+ .++++.+++||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCCc
Confidence 7999999997221 1 111348999999999999977653 68999999 8899989999999994 55
Q ss_pred ccccC--CHHHHHHHHHhhccCCc
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGG 229 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG 229 (299)
++|+. +..++++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99986 46789999999999998
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=117.03 Aligned_cols=137 Identities=22% Similarity=0.233 Sum_probs=95.4
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCC-C-CCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPK-L-PFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~-l-pf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||+|...... ...+..++|+|+|++|++.+++ .++++.+|+ .. + ++++++||+|+++.+++|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~---~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDL---DEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEh---hhcccccCCCCcCEEEEhhHhHcCc
Confidence 3468999999999633222 2235678999999999988754 488999998 43 4 47788999999999999999
Q ss_pred CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhc------------CCCchhhh--HHHH--HHHhCCCCCCeee
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTST------------GDADHVMI--VGAY--FHYAGGYEPPQAV 276 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~~--~~~~aGF~~v~~~ 276 (299)
|+..+++++.|+++ .+++++++...+......+... .+..+..+ ...+ +.+++||+.++..
T Consensus 90 d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 99999999988765 5677888866555433322210 01111122 1221 2277999998876
Q ss_pred ecC
Q 022305 277 DIS 279 (299)
Q Consensus 277 ~~~ 279 (299)
...
T Consensus 167 ~~~ 169 (194)
T TIGR02081 167 AFD 169 (194)
T ss_pred Eec
Confidence 664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-13 Score=118.94 Aligned_cols=94 Identities=28% Similarity=0.407 Sum_probs=77.6
Q ss_pred CCceeeccCcCCccc--cCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSH--FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|... +....+ ..+++|+|+++.+++.+++ .++++.+|+ ..+++++++||+|++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA---EALPFPDNSFDAVTIA 128 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc---ccCCCCCCCccEEEEe
Confidence 468999999999622 222223 5899999999999986654 267888888 7777878899999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.++++++++..+++++.++|+|||.+++.
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999999999999999987764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-14 Score=122.81 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=73.2
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.++++ +.+...|+ ...+++ ++||+|+++.+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI---NAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc---hhcccc-CCCCEEEEeccccc
Confidence 47899999999975444444578999999999999876432 55667777 555554 57999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEE
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii 233 (299)
++ +...++++++|+|||||++++
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 85 567899999999999998544
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=115.95 Aligned_cols=95 Identities=27% Similarity=0.426 Sum_probs=78.9
Q ss_pred cCCceeeccCcCCccc--cCCCCCC-CeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQ-DRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~-~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||.|... +....+. .+++|+|+++.+++.+++ +++++.+|+ .++++++++||+|+++.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 3568999999999632 2223333 689999999999987654 368889998 778887889999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++|.+++..+++++.++|||||.+++.
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999999999999999988764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-14 Score=120.11 Aligned_cols=99 Identities=16% Similarity=0.277 Sum_probs=87.6
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
....+|.|+|||+|. ..+...++++.++|+|.|++||+.|+++ ++|..+|+ .... ++..+|+++++.+++|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl---~~w~-p~~~~dllfaNAvlqW 104 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL---RTWK-PEQPTDLLFANAVLQW 104 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH---hhcC-CCCccchhhhhhhhhh
Confidence 356789999999996 5667788999999999999999998764 88999999 6654 3567999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++|-.+.|..+...|.|||++.+.+|+.
T Consensus 105 lpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 105 LPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999999999999999999998863
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=121.50 Aligned_cols=155 Identities=20% Similarity=0.294 Sum_probs=104.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC-CCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|.........+.+++|+|+++.+++.++++ +++...|. ..++ ..+++||+|++..+++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhhHhh
Confidence 45799999999974333333467899999999999876542 56677776 4443 3457899999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH--------HHhhhhcCCCchhhh-----HHHHHHHhCCCCCCeee
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA--------ISIWTSTGDADHVMI-----VGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~aGF~~v~~~ 276 (299)
|++++..+++++.++|+|||.++++.++....... ...+.......+..+ +...+ ..+||+.++..
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~v~~~ 204 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL-RQAGLEVQDIT 204 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH-HHCCCeEeeee
Confidence 99999999999999999999999987664332111 111111111111112 12222 67999999888
Q ss_pred ecCCCC--------CCCCCeEEEEEEec
Q 022305 277 DISPNP--------GRSDPMYVVYSRKA 296 (299)
Q Consensus 277 ~~~~~~--------~~~~p~~~v~arK~ 296 (299)
.....+ ...+-.|...+||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (233)
T PRK05134 205 GLHYNPLTNRWKLSDDVDVNYMLAARKP 232 (233)
T ss_pred eEEechhhcceeeccCccchhhhheecC
Confidence 765433 12344466667765
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-13 Score=118.18 Aligned_cols=181 Identities=18% Similarity=0.278 Sum_probs=108.4
Q ss_pred HhhccCCCcccccCcchhhccccHHHH-HHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----
Q 022305 105 FQRFDESPDSLFYETPRFVTHIDDPAI-AAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----- 177 (299)
Q Consensus 105 ~~~~d~~~~~~~y~~~~~~~~l~~~~~-~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----- 177 (299)
.+++=...|.|-|....|-..-....+ ..| ...|.++||+|||.|...........+++++|+|+.+++.|++
T Consensus 9 l~~~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~ 88 (201)
T PF05401_consen 9 LNRELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL 88 (201)
T ss_dssp HHHHHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC
Confidence 333333455555544334332222233 335 4578899999999996444433345789999999999998875
Q ss_pred -CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC---HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCC
Q 022305 178 -LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGD 253 (299)
Q Consensus 178 -~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~ 253 (299)
+++|++.|+ ... .++++||+|+++.+++|+.+ ...+++.+...|+|||.+|+.... ......|....+
T Consensus 89 ~~V~~~~~dv---p~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r----d~~c~~wgh~~g 160 (201)
T PF05401_consen 89 PHVEWIQADV---PEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR----DANCRRWGHAAG 160 (201)
T ss_dssp SSEEEEES-T---TT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-----HHHHHHTT-S--
T ss_pred CCeEEEECcC---CCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CCcccccCcccc
Confidence 388999998 443 46789999999999999975 457899999999999999997542 334456765443
Q ss_pred CchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecCCC
Q 022305 254 ADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKASTA 299 (299)
Q Consensus 254 ~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~~~ 299 (299)
.+ -+.+.|.+ -|.+++.+.+.... ..+-..++-.|||.+|
T Consensus 161 a~---tv~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 200 (201)
T PF05401_consen 161 AE---TVLEMLQE--HLTEVERVECRGGS-PNEDCLLARFRNPVSA 200 (201)
T ss_dssp HH---HHHHHHHH--HSEEEEEEEEE-SS-TTSEEEEEEEE--SSS
T ss_pred hH---HHHHHHHH--HhhheeEEEEcCCC-CCCceEeeeecCCcCC
Confidence 32 34444542 26677766664322 2234566667776543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-13 Score=125.85 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|...+.....+.+|+|+|+|+.|++.+++ .+++...|+ ...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~---~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI---NSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech---hcccc-cCCccEEEEcchhhh
Confidence 3589999999997554444457899999999999987654 266777888 55555 678999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++ +...+++++.++|||||++++.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 86 5678999999999999986653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-13 Score=117.53 Aligned_cols=92 Identities=14% Similarity=0.252 Sum_probs=74.4
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
...+|||+|||+|... +....++.+++|+|+|++|++.|+++ +++.++|+ .. |+++++||+|+++.+++|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSL---FD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeec---cC-CCCCCCEEEEEECChhhhC
Confidence 3468999999999733 23333578999999999999998763 67888998 56 8889999999999999999
Q ss_pred C--CHHHHHHHHHhhccCCcEEEEE
Q 022305 212 T--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 212 ~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+ +..++++++.|+++ ++++|.
T Consensus 119 ~p~~~~~~l~el~r~~~--~~v~i~ 141 (204)
T TIGR03587 119 NPDNLPTAYRELYRCSN--RYILIA 141 (204)
T ss_pred CHHHHHHHHHHHHhhcC--cEEEEE
Confidence 5 46789999999983 566554
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-13 Score=117.75 Aligned_cols=140 Identities=20% Similarity=0.282 Sum_probs=96.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC-CCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE-DNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l 208 (299)
..+|||+|||+|.........+.+++|+|+|+.+++.+++ ++++...|+ .+++.. +++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV---EDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhcCCCCCccEEEehhHH
Confidence 4689999999997444333345679999999999886654 256677777 555544 4789999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH--------hhhhcCCCchhhh-----HHHHHHHhCCCCCCee
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS--------IWTSTGDADHVMI-----VGAYFHYAGGYEPPQA 275 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~~~~aGF~~v~~ 275 (299)
+|+.++..+++++.++|+|||.+++...+......... .|.......+..+ +.+.+ .++||+.+++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~G~~i~~~ 201 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL-ESAGLRVKDV 201 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH-HHcCCeeeee
Confidence 99999999999999999999999988776543221111 1111111111111 12222 6799999988
Q ss_pred eecCCC
Q 022305 276 VDISPN 281 (299)
Q Consensus 276 ~~~~~~ 281 (299)
....-.
T Consensus 202 ~~~~~~ 207 (224)
T TIGR01983 202 KGLVYN 207 (224)
T ss_pred eeEEee
Confidence 766443
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-13 Score=119.15 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred HHHhhhcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCC
Q 022305 131 IAALTKYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNS 198 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~ 198 (299)
.+.+.+...+|||+|||+|.. .+....++.+++|+|+|++|++.+++ +++++++|+. +.++ +++++
T Consensus 34 ~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~ 111 (202)
T PRK00121 34 AELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGS 111 (202)
T ss_pred HHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccc
Confidence 333333456899999999963 33344567899999999999987653 3678888862 2444 67889
Q ss_pred eeEEEecccccccC--------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 199 FDVITNVVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 199 FD~Vis~~~l~~~~--------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
||+|++++...+.. ....++++++++|||||.+++...+.........
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~ 167 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLE 167 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH
Confidence 99999987655432 1478999999999999999998776555444433
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-13 Score=134.63 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC--CCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp--f~~~~FD~Vis~~ 206 (299)
..+|||+|||+|.. .+....++.+++|+|+|+.|++.++++ ++++++|. .++| +++++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEch
Confidence 47899999999963 344446788999999999999877642 46688898 6777 8889999999999
Q ss_pred ccccc-------------CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 207 SVDYL-------------TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 207 ~l~~~-------------~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++||+ .++.++|++++|+|||||.+++..
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99875 256899999999999999998864
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=119.51 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=96.9
Q ss_pred cCCceeeccCcCC--ccccC--CCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPG--VSHFP--PGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G--~~~~~--~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+|+|+|||.| +..+. ...++++++|+|+++++++.|++ +++|..+|+ .+.+-..+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 4578999999977 43332 34578899999999999986654 388999998 5543235779999
Q ss_pred Eeccccccc--CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 203 TNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 203 is~~~l~~~--~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++. +++++ +++.++++++.+.|||||++++..... ........-++. .-.||+...++.-.
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G-----~r~~LYp~v~~~----------~~~gf~~~~~~~P~- 262 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG-----ARAFLYPVVDPC----------DLRGFEVLSVFHPT- 262 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccc-----hHhhcCCCCChh----------hCCCeEEEEEECCC-
Confidence 999 88888 689999999999999999999975321 011111111111 12389876665432
Q ss_pred CCCCCCCeEEEEEEecC
Q 022305 281 NPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 281 ~~~~~~p~~~v~arK~~ 297 (299)
..--.-+|++||.+
T Consensus 263 ---~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 263 ---DEVINSVIIARKPG 276 (296)
T ss_pred ---CCceeeEEEEEeec
Confidence 22355789999975
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=112.09 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=88.3
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHH----hcC--CCCcEEEeccCCCC-CCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNP-KLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~----~a~--~~~~~~~~D~~~~~-~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|. ..+....+..+|+|+|++++|++ .++ .++.++.+|+.... ..++. ++||+|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d-- 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQD-- 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEEC--
Confidence 44689999999997 22233323468999999999887 333 24788888983100 01233 569999854
Q ss_pred ccccCCH---HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 208 VDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 208 l~~~~d~---~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
+.++ ..+++++.|+|||||.++|.++... ..|.... ........+.+ .++||+.++.++..+-.
T Consensus 149 ---~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~------~d~~~~~-~~~~~~~~~~l-~~aGF~~i~~~~l~p~~-- 215 (226)
T PRK04266 149 ---VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS------IDVTKDP-KEIFKEEIRKL-EEGGFEILEVVDLEPYH-- 215 (226)
T ss_pred ---CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc------ccCcCCH-HHHHHHHHHHH-HHcCCeEEEEEcCCCCc--
Confidence 3333 3468999999999999999755321 0111100 01111111223 56899999998876432
Q ss_pred CCCeEEEEEEe
Q 022305 285 SDPMYVVYSRK 295 (299)
Q Consensus 285 ~~p~~~v~arK 295 (299)
...|.++++|
T Consensus 216 -~~h~~~v~~~ 225 (226)
T PRK04266 216 -KDHAAVVARK 225 (226)
T ss_pred -CCeEEEEEEc
Confidence 3567777776
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=110.14 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=70.8
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|...+ ....+..+|+|+|+|+.|++.+++ +++++.+|+ ++++ .+++||+|+|..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~---~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA---EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch---hhcc-ccCCccEEEehh-
Confidence 4689999999997433 233456789999999998875532 378899998 6664 357899999975
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.+...+++++.++|||||.+++...
T Consensus 118 ---~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 ---LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 34667888999999999999988643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=110.74 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=94.2
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|.... ....++.+++++|+|+.|++.++++ ++++.+|. . .++ .++||+|++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~---~-~~~-~~~~D~v~~~~ 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA---P-IEL-PGKADAIFIGG 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc---h-hhc-CcCCCEEEECC
Confidence 44689999999997332 3344668999999999999877542 56666775 2 233 35799999986
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC----
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 282 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~---- 282 (299)
..+ ....+++++.++|||||.+++........ ......+ ...||..+++..+.-..
T Consensus 106 ~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~----------------~~~~~~l-~~~g~~~~~~~~~~~~~~~~~ 165 (187)
T PRK08287 106 SGG---NLTAIIDWSLAHLHPGGRLVLTFILLENL----------------HSALAHL-EKCGVSELDCVQLQVSSLTPL 165 (187)
T ss_pred Ccc---CHHHHHHHHHHhcCCCeEEEEEEecHhhH----------------HHHHHHH-HHCCCCcceEEEEEEEeeeEc
Confidence 654 45678999999999999998865321111 1112233 45889888776653321
Q ss_pred ------CCCCCeEEEEEEecC
Q 022305 283 ------GRSDPMYVVYSRKAS 297 (299)
Q Consensus 283 ------~~~~p~~~v~arK~~ 297 (299)
+...|.+++++.|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK08287 166 GAGHYFKPNNPTFIISCQKEE 186 (187)
T ss_pred CcceeeccCCCEEEEEEEcCC
Confidence 345799999999954
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=116.17 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=73.9
Q ss_pred cCCceeeccCcCCccccCC------CCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPP------GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~------~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|...... ..++.+++|+|+|++|++.|+++ +++.+.+. ..+++++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---ccccccCCCccEEEEC
Confidence 3468999999999632211 12346999999999999987764 56777777 6777778899999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.++||++++ ..++++++|++| |.+++...
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 999999875 579999999998 44555433
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-12 Score=113.63 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..++||+|||+|.........+.+++|+|+|++|++.+++ ++++.++|+ ..++ ++||+|++..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL---LSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---hhCC---CCcCEEEEhhHH
Confidence 4689999999997444333346799999999999987654 367888888 6655 789999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG~lii 233 (299)
+|++ ++..+++++.+++++++.+.+
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9985 467899999999987655544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-12 Score=127.70 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=78.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..+|||+|||+|...........+|+|+|+|+.|++.+++ +++++++|+.. ..+++++++||+|++..+++|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhHHhC
Confidence 3589999999997433333335799999999999987642 36788899821 2467888999999999999999
Q ss_pred CC--HHHHHHHHHhhccCCcEEEEEe
Q 022305 212 TK--PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 212 ~d--~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++ ..+++++++|+|||||.+++..
T Consensus 117 ~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 117 SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 86 5789999999999999998864
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-13 Score=120.28 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=67.6
Q ss_pred hcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||.|...+.. ...+++|+|+.+|+++.+.+++ ++++...|. .+++. +||.|+|.
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~---~~~~~---~fD~IvSi 134 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY---RDLPG---KFDRIVSI 134 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G---GG------S-SEEEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec---cccCC---CCCEEEEE
Confidence 34578999999988633322 2237899999999999987643 266788887 55543 89999999
Q ss_pred cccccc--CCHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~--~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+++|+ .+...+|+++.++|||||.+++...
T Consensus 135 ~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 135 EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred echhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999 4779999999999999999987643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-12 Score=112.21 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=106.6
Q ss_pred hhccccHHHHHHh---hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC------CcEEEeccCCCC
Q 022305 122 FVTHIDDPAIAAL---TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNP 190 (299)
Q Consensus 122 ~~~~l~~~~~~~l---~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~------~~~~~~D~~~~~ 190 (299)
+.+.+...+.+++ ++.+..++|+||+-|. .++. ...-.+++-+|.|-.|++.++.- +.+.++|- +
T Consensus 54 lkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~-~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E 129 (325)
T KOG2940|consen 54 LKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLR-GEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---E 129 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHH-hcchhheeeeecchHHHHHhhccCCCceEEEEEecch---h
Confidence 4445555555554 5678899999999884 2222 22246899999999999987752 66788898 8
Q ss_pred CCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHH------HhhhhcCCCchhhhHH---
Q 022305 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI------SIWTSTGDADHVMIVG--- 261 (299)
Q Consensus 191 ~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--- 261 (299)
.++|.+++||+|+++.++||++|++..+.+++..|||+|.||-+.-....+.+.. ..-.+.+-..|+..+.
T Consensus 130 ~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvr 209 (325)
T KOG2940|consen 130 FLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVR 209 (325)
T ss_pred cccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhh
Confidence 9999999999999999999999999999999999999999998755433332221 1112223334444333
Q ss_pred ---HHHHHhCCCCCCee
Q 022305 262 ---AYFHYAGGYEPPQA 275 (299)
Q Consensus 262 ---~~~~~~aGF~~v~~ 275 (299)
..+ ..+||..+.+
T Consensus 210 DiG~LL-~rAGF~m~tv 225 (325)
T KOG2940|consen 210 DIGNLL-TRAGFSMLTV 225 (325)
T ss_pred hhhhHH-hhcCccccee
Confidence 333 5599987644
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-12 Score=123.44 Aligned_cols=94 Identities=21% Similarity=0.173 Sum_probs=74.3
Q ss_pred cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
...+|||+|||.|.... .....+.+|+|+|+|++|++.++++ +++...|. ..+ +++||+|++..+++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~---~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---RDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch---hhc---CCCCCEEEEeCchhh
Confidence 44689999999996332 2222467999999999999987764 45666676 444 478999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+. ++..+++++.++|||||.+++...
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 95 467999999999999999988754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-12 Score=112.77 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=79.8
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC---CCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP---FEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp---f~~~~FD~Vis 204 (299)
..++||+|||+|.. .++...+..+++|+|+++.|++.+.+ +++++.+|+ ..++ +++++||.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~---~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA---NELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH---HHHHHhhCCCCceeEEEE
Confidence 35899999999973 34455678899999999999987653 478899998 5543 55679999999
Q ss_pred cccccccCCH--------HHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 205 VVSVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 205 ~~~l~~~~d~--------~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
++...|.... ..+++++.|+|||||.+++.+.+.......
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~ 141 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDM 141 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 8766554322 579999999999999999987665544443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-12 Score=110.91 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC--------------------CCCcEEEeccCCCCCCCCC-C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE-D 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~--------------------~~~~~~~~D~~~~~~lpf~-~ 196 (299)
..+|||+|||.|......+..+.+|+|+|+|+.+++.+. ..++++++|+ .+++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF---FALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC---CCCCcccC
Confidence 369999999999855555567899999999999998731 1367889999 666543 4
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.||.|+-..+++|++ ....+++.+.++|||||++++.
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5799999999999996 3467899999999999965443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=108.32 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=71.1
Q ss_pred hcCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC--------CCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL--------PFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l--------pf~~~~FD~Vis 204 (299)
+...+|||+|||+|... +.... +...|+|||+++ |... ..++++++|+ ... ++.+++||+|+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~--~~v~~i~~D~---~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI--VGVDFLQGDF---RDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC--CCcEEEecCC---CChHHHHHHHHHhCCCCCCEEec
Confidence 34468999999999632 22222 347999999998 4322 3488999999 554 266789999999
Q ss_pred cccccccCCH-----------HHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~-----------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+.++..++ ..+|+++.++|||||.+++.+..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 8877766432 46899999999999999986543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=106.05 Aligned_cols=136 Identities=11% Similarity=0.082 Sum_probs=92.0
Q ss_pred cCCceeeccCcCCccccCC--C-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCCCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHFPP--G-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~--~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf~~~~FD~Vi 203 (299)
...++||+|||+|...... . .+..+|+++|+|+.|++.+++ +++++.+|. .+ ++..++.||+|+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~---~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA---PEILFTINEKFDRIF 116 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech---hhhHhhcCCCCCEEE
Confidence 3468999999999633321 1 245799999999999986543 356777787 44 333346899999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC-
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP- 282 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~- 282 (299)
+.. ...++..+++++.++|||||.+++......... -....+ +..|| .+++..+....
T Consensus 117 ~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~----------------~~~~~l-~~~g~-~~~~~~~~~~~~ 175 (198)
T PRK00377 117 IGG---GSEKLKEIISASWEIIKKGGRIVIDAILLETVN----------------NALSAL-ENIGF-NLEITEVIIAKG 175 (198)
T ss_pred ECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHH----------------HHHHHH-HHcCC-CeEEEEEehhhc
Confidence 864 345788999999999999999998655322211 112222 34777 56666653321
Q ss_pred ---------CCCCCeEEEEEEec
Q 022305 283 ---------GRSDPMYVVYSRKA 296 (299)
Q Consensus 283 ---------~~~~p~~~v~arK~ 296 (299)
....|.++++++|+
T Consensus 176 ~~~~~~~~~~~~npv~~~~~~~~ 198 (198)
T PRK00377 176 MKTKVGTAMMTRNPIFIISGEKQ 198 (198)
T ss_pred ccccCCcEeecCCCEEEEEEecC
Confidence 13479999999884
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=105.35 Aligned_cols=94 Identities=22% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|.........+.+++|+|+|++|++.++++ ++++.+|. ...+ .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---cccc--CCcccEEEECCCCCC
Confidence 36899999999974443333344899999999999877653 56677787 4433 458999999987766
Q ss_pred cCC---------------------HHHHHHHHHhhccCCcEEEEEec
Q 022305 211 LTK---------------------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 211 ~~d---------------------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.++ ..++++++.|+|||||.+++..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 643 35679999999999999888654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=109.43 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=90.2
Q ss_pred hhccccHHHHHHhh----hcCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHH----HHHhcCC--CCcEEEeccCC
Q 022305 122 FVTHIDDPAIAALT----KYYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEE----ELKRNPV--LTEYVVQDLNL 188 (299)
Q Consensus 122 ~~~~l~~~~~~~l~----~~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~----ml~~a~~--~~~~~~~D~~~ 188 (299)
+.+.|...++.-+. +.-.+|||+|||+|. .+++... +...|+++|+|+. |++.+++ ++.++..|+..
T Consensus 113 ~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~ 192 (293)
T PTZ00146 113 FRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY 192 (293)
T ss_pred cccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC
Confidence 34445444433332 334689999999997 3333332 2468999999986 5566543 58889999832
Q ss_pred CCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHH--HHHHH
Q 022305 189 NPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG--AYFHY 266 (299)
Q Consensus 189 ~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 266 (299)
...+....++||+|++... ..++...++.++.++|||||.|+|.+...+ . ....+.+..|-. +.+ +
T Consensus 193 p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~-------i--d~g~~pe~~f~~ev~~L-~ 260 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC-------I--DSTAKPEVVFASEVQKL-K 260 (293)
T ss_pred hhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc-------c--ccCCCHHHHHHHHHHHH-H
Confidence 1122333468999999864 233444666799999999999999644322 0 111111111111 223 6
Q ss_pred hCCCCCCeeeecCC
Q 022305 267 AGGYEPPQAVDISP 280 (299)
Q Consensus 267 ~aGF~~v~~~~~~~ 280 (299)
++||++++.+++.|
T Consensus 261 ~~GF~~~e~v~L~P 274 (293)
T PTZ00146 261 KEGLKPKEQLTLEP 274 (293)
T ss_pred HcCCceEEEEecCC
Confidence 68999999888754
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-12 Score=111.23 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=70.0
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEec--cCCCCCCCCC--CCCeeEEEecccccccC
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQD--LNLNPKLPFE--DNSFDVITNVVSVDYLT 212 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D--~~~~~~lpf~--~~~FD~Vis~~~l~~~~ 212 (299)
..++|+|||+|......+-...+|+|+|+|+.||+.+++. +.+...- +..++..++. +++.|+|+|..++||+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 4789999999965554444457999999999999999885 2221111 1011334444 8999999999999999
Q ss_pred CHHHHHHHHHhhccCCc-EEEE
Q 022305 213 KPIEVFKEMCQVLKPGG-LAIV 233 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG-~lii 233 (299)
|.++++++++|+||+.| .+.+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEE
Confidence 89999999999998877 4444
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-12 Score=99.50 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=70.7
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCC-CCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~-lpf~~~~FD~Vis~~ 206 (299)
..++||+|||+|.. .+....+..+++|+|+|+.+++.+++ +++++..|+ .. ++...++||+|++..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cccChhhcCCCCEEEECC
Confidence 46899999999973 33334456899999999999987654 256677776 33 334446899999977
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..+ ...++++++++.|||||.+++.+.
T Consensus 97 ~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 554 346899999999999999999764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=107.04 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|........ ...+++|+|+|+.|++.++++ ++++.+|+ .. .+++++||+|+++--..
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---AR-AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hh-hccCCCeeEEEECCCCC
Confidence 46899999999973332222 234999999999999866542 55677777 33 34567899999973221
Q ss_pred ccC---------------------CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 210 YLT---------------------KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 210 ~~~---------------------d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
... ....+++++.++|||||.+++..+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 110 14568889999999999988865554
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=112.05 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=92.7
Q ss_pred hcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||-|. ..+.....+.+|+|+++|+++.+.+++ ++++...|. ..+ ++.||-|+|.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~---rd~---~e~fDrIvSv 144 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY---RDF---EEPFDRIVSV 144 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc---ccc---ccccceeeeh
Confidence 456799999999885 333333348999999999999987765 256777776 444 3449999999
Q ss_pred ccccccCC--HHHHHHHHHhhccCCcEEEEEe-cCcc----hHHHHHHhh-hhcCCCchhhhHHHHHHHhCCCCCCeeee
Q 022305 206 VSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF-SNRC----FWTKAISIW-TSTGDADHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 206 ~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~-~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
..++|+.. .+.+|+.++++|+|||.+++.. ..+. .....+..+ ...+....+..+.... ..+||.......
T Consensus 145 gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~-~~~~~~v~~~~~ 223 (283)
T COG2230 145 GMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELA-SEAGFVVLDVES 223 (283)
T ss_pred hhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHH-HhcCcEEehHhh
Confidence 99999964 8999999999999999777653 2222 222333332 2323333344444443 458888766544
Q ss_pred c
Q 022305 278 I 278 (299)
Q Consensus 278 ~ 278 (299)
.
T Consensus 224 ~ 224 (283)
T COG2230 224 L 224 (283)
T ss_pred h
Confidence 4
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=112.51 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
..+|||+|||+|...+.....+.+|+|+|+|+.|++.++++ ++|...|+ +.+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---ESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch---hhc---CCCcCEEEE
Confidence 35899999999974444434478999999999999876553 34566666 433 578999999
Q ss_pred cccccccCCH--HHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+++|+++. ..+++.+.+ +.+||. +|++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p 251 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAP 251 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCC
Confidence 9999999763 346666665 455554 556544
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-12 Score=108.26 Aligned_cols=93 Identities=16% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..++||+|||.|...+-.+..|..|+++|+|+..++...+ .++..+.|+ ....++ +.||+|++..+++|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl---~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL---NDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG---CCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc---hhcccc-CCcCEEEEEEEecc
Confidence 4799999999998555555568999999999999986543 277888999 666665 67999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++ ..+++++.|...++|||++++.
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 95 4578999999999999987774
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=108.25 Aligned_cols=86 Identities=9% Similarity=0.112 Sum_probs=64.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|.........+.+++|+|+|+.|++.+++ ++++..+|+ + ..+++||+|++..++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~---~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---E---SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---h---hccCCcCEEEEcchh
Confidence 4689999999997443333345679999999999987765 256666665 3 346889999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCc
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGG 229 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG 229 (299)
+|++ +...+++++.+.+++++
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeE
Confidence 9986 44678899988775443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-11 Score=106.43 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=73.7
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC--------------------CCCcEEEeccCCCCCCCCC-C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE-D 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~--------------------~~~~~~~~D~~~~~~lpf~-~ 196 (299)
..+|||+|||.|.........+.+|+|||+|+.+++.+. ..+++.++|+ ..++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~---~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF---FALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc---cCCCcccC
Confidence 368999999999865555557899999999999998641 1367788998 666433 2
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEE
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~li 232 (299)
..||+|+-..+++|++ ...++++.+.++|||||.++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 5899999999999996 44689999999999999543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=110.75 Aligned_cols=92 Identities=8% Similarity=0.055 Sum_probs=72.9
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...++||+|||+|. ..+...+++.+++++|+ +.+++.+++ +++++.+|+ .+.++++ +|+|++.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~---~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYPE--ADAVLFC 222 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc---cCCCCCC--CCEEEeE
Confidence 44689999999997 33455567889999997 788886643 377899998 5555543 6999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEE
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~ 234 (299)
.++|+.++. .++|++++++|||||.++|.
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999988654 57999999999999988765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=105.31 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=69.3
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|... +.... +..+|+++|++++|++.++++ ++++.+|. ......+++||+|++
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG---KRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc---ccCCccCCCccEEEE
Confidence 4468999999999632 22222 246999999999999876542 56788888 544445678999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..++++++ .++.++|||||.+++.+.
T Consensus 149 ~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 149 TAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 99988775 478899999999988654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-11 Score=107.82 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred hcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCCCcEEEe-ccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQ-DLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~~~~~~~-D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
....+|||+|||+|...+.....+ .+|+|+|+|+.|++.++++...... +. ..++..+.+||+|+++...+ .
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~---~~~~~~~~~fD~Vvani~~~---~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELN---VYLPQGDLKADVIVANILAN---P 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCce---EEEccCCCCcCEEEEcCcHH---H
Confidence 345789999999996433322233 4699999999999988765321111 11 11222233799999975433 2
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEE
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYS 293 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~a 293 (299)
...+++++.++|||||.++++..... ....+...+ ...||+.+++.. ...+..+++
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l-~~~Gf~~~~~~~-------~~~W~~~~~ 247 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAY-EEAGFTLDEVLE-------RGEWVALVG 247 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHH-HHCCCEEEEEEE-------eCCEEEEEE
Confidence 46788999999999999998733211 111223333 448898776544 235667777
Q ss_pred Eec
Q 022305 294 RKA 296 (299)
Q Consensus 294 rK~ 296 (299)
+|+
T Consensus 248 ~~~ 250 (250)
T PRK00517 248 KKK 250 (250)
T ss_pred EeC
Confidence 763
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-11 Score=110.09 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=77.4
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccc-
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS- 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~- 207 (299)
....+||+|||+|+..+.....+.+++|+|+++.|++.++.+ +++..+|+ .++|+.+++||+|+++--
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~---~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA---TKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch---hcCCcccCCCCEEEECCCC
Confidence 345799999999985555555678999999999999866543 57888999 788888899999999621
Q ss_pred -----cc-c-cCC-HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 208 -----VD-Y-LTK-PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 208 -----l~-~-~~d-~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.. + ..+ ..++++++.|+|||||.+++.+++..
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 11 1 112 47899999999999999988877643
|
This family is found exclusively in the Archaea. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=107.93 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCC-CCCCCC----Cee
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LPFEDN----SFD 200 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~-lpf~~~----~FD 200 (299)
..+|||+|||+|.. .+....+ +.+++|+|+|++||+.+.++ +.++++|+ .+ +++... ...
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~---~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF---TQPLALPPEPAAGRRL 140 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc---cchhhhhcccccCCeE
Confidence 46799999999973 2333333 57899999999999876442 45678998 43 333332 334
Q ss_pred EEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHH
Q 022305 201 VITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 201 ~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~ 243 (299)
++++..++++++ +...+|++++++|+|||.++|.+........
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~ 185 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAV 185 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHH
Confidence 555667788885 4567999999999999999998765444333
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-11 Score=110.73 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=75.5
Q ss_pred HHHHhhh-cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCe
Q 022305 130 AIAALTK-YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~F 199 (299)
+++.+.. ...+|||+|||+|.. .+....+..+|+++|+|+.|++.++++ .+++..|. .. ..++.|
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~---~~--~~~~~f 262 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV---FS--DIKGRF 262 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc---cc--ccCCCc
Confidence 3444432 346899999999963 334444667999999999999977652 44566665 22 235789
Q ss_pred eEEEeccccccc-----CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 200 DVITNVVSVDYL-----TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 200 D~Vis~~~l~~~-----~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+|+|+-.+|+. ....++++++.+.|||||.++|....
T Consensus 263 DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 999999888763 24578999999999999999886543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=99.18 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=73.8
Q ss_pred HHHhhh-cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCe
Q 022305 131 IAALTK-YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 131 ~~~l~~-~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~F 199 (299)
++.+.. ...++||+|||+|. ..+....+..+|+++|+|+.+++.++++ ++++..|.. + +.++++|
T Consensus 24 ~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~--~--~~~~~~f 99 (170)
T PF05175_consen 24 LDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF--E--ALPDGKF 99 (170)
T ss_dssp HHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT--T--TCCTTCE
T ss_pred HHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc--c--cccccce
Confidence 344433 55789999999996 3333444556799999999999977652 557777762 2 3347899
Q ss_pred eEEEecccccccCC-----HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 200 DVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 200 D~Vis~~~l~~~~d-----~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
|+|+|+-=++.-.+ ..+++++..+.|||||.+++......
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 99999865444433 47889999999999998877655433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=98.93 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=68.1
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+ ....++.+|+++|+|++|++.+++ +++++.+|+. +.++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~--~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAP--ECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchH--HHHhhCCCCCCEEEEEC
Confidence 34689999999997332 223456899999999999987654 2567777772 12222223467665432
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
..+...+++++.++|||||.+++...+.
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 2466899999999999999999987653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.4e-11 Score=107.01 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=95.4
Q ss_pred hhccccHHHHHHhhhcCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCC--------------CcEEEecc
Q 022305 122 FVTHIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVL--------------TEYVVQDL 186 (299)
Q Consensus 122 ~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~--------------~~~~~~D~ 186 (299)
+...+...+|...++....++++|||-|...+-.... -..++|+||++..+++|+++ +.|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 4444555667777888889999999987655443333 36899999999999988763 56888886
Q ss_pred CC---CCCCCCCCCCeeEEEeccccccc----CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHh
Q 022305 187 NL---NPKLPFEDNSFDVITNVVSVDYL----TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 247 (299)
Q Consensus 187 ~~---~~~lpf~~~~FD~Vis~~~l~~~----~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~ 247 (299)
.. .+.+++.+.+||+|-|-+++||. .....+|+++.+.|||||+||-++|+.....+.+..
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 32 13346667779999999999986 245678999999999999999999997766554433
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-11 Score=111.08 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC--CCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l--pf~~~~FD~Vis~ 205 (299)
...+||+|||+|. ..++...+...++|+|+++.|++.+.+ ++.++.+|+ ..+ .++++++|.|+++
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA---~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA---RLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHhhhhCCCCceeEEEEe
Confidence 3579999999997 444555678899999999999876543 377888898 443 4788999999987
Q ss_pred ccccccCCH------HHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 206 VSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 206 ~~l~~~~d~------~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
+...|.... ..+++++.|+|||||.+.+.+.+.......
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~ 244 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFS 244 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHH
Confidence 655554332 589999999999999999987765544443
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=101.65 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=83.6
Q ss_pred HHHhhhcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCee
Q 022305 131 IAALTKYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
++.+.....+|||+|||+|.. .+....+..+++|+|+|+.+++.+++ +++++.+|+ .. ++++++||
T Consensus 81 l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~fD 156 (251)
T TIGR03534 81 LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW---FE-PLPGGKFD 156 (251)
T ss_pred HHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hc-cCcCCcee
Confidence 333333345899999999973 23333456799999999999997764 267788887 43 45678999
Q ss_pred EEEeccccc------ccC--------------------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCC
Q 022305 201 VITNVVSVD------YLT--------------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA 254 (299)
Q Consensus 201 ~Vis~~~l~------~~~--------------------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~ 254 (299)
+|+++--.. .+. ....+++++.++|||||.+++....
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~----------------- 219 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY----------------- 219 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------------
Confidence 999853211 111 1246789999999999999987532
Q ss_pred chhhhHHHHHHHhCCCCCCeeee
Q 022305 255 DHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 255 ~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
.+...+.+++. .+||+.+++..
T Consensus 220 ~~~~~~~~~l~-~~gf~~v~~~~ 241 (251)
T TIGR03534 220 DQGEAVRALFE-AAGFADVETRK 241 (251)
T ss_pred cHHHHHHHHHH-hCCCCceEEEe
Confidence 11123344453 47898777643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=106.49 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHhhhcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCee
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD 200 (299)
++.+.....+|||+|||+|...+.. .....+|+|+|+|+.|++.++++ +.+...+. .+..+++||
T Consensus 153 l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~-----~~~~~~~fD 227 (288)
T TIGR00406 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL-----EQPIEGKAD 227 (288)
T ss_pred HHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc-----ccccCCCce
Confidence 3333344578999999999643332 22345899999999999987764 12222222 234467899
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+|+++...++ ...++.++.++|||||+++++..
T Consensus 228 lVvan~~~~~---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 228 VIVANILAEV---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EEEEecCHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999865443 46789999999999999998743
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-10 Score=99.74 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=106.4
Q ss_pred cHHHHHHhhh--cCCceeeccCcCCcc-cc-CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCC
Q 022305 127 DDPAIAALTK--YYSEVFPPSNTPGVS-HF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP 193 (299)
Q Consensus 127 ~~~~~~~l~~--~~~~vLDiGcG~G~~-~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lp 193 (299)
|.-++..+.. ...+|||+|||+|.. .+ +......+++|||+.++|.+.|+++ ++++++|+ .++.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di---~~~~ 108 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI---KEFL 108 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH---HHhh
Confidence 4445555532 357899999999973 33 3333558999999999999988763 88899999 4443
Q ss_pred --CCCCCeeEEEeccc----------------cccc--CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCC
Q 022305 194 --FEDNSFDVITNVVS----------------VDYL--TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGD 253 (299)
Q Consensus 194 --f~~~~FD~Vis~~~----------------l~~~--~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~ 253 (299)
....+||+|+|+== -+|. -+.+.+++...++|||||.+.+..+...
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er-------------- 174 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER-------------- 174 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH--------------
Confidence 34457999999811 1121 2467899999999999999988644211
Q ss_pred CchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecCC
Q 022305 254 ADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAST 298 (299)
Q Consensus 254 ~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~~ 298 (299)
..-+-+.+ ...+|.+-++..+-|.++...-..+|.++|.+.
T Consensus 175 ---l~ei~~~l-~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 175 ---LAEIIELL-KSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred ---HHHHHHHH-HhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 11111122 446899999999999888887888888888764
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=99.31 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=77.6
Q ss_pred ceeeccCcCCccccCCCC--CC--CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCC-CCCCCCCCeeEEEeccc
Q 022305 140 EVFPPSNTPGVSHFPPGY--KQ--DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNP-KLPFEDNSFDVITNVVS 207 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~--~~--~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~-~lpf~~~~FD~Vis~~~ 207 (299)
+||++|||.|...++... ++ -.++++|.|+.+++..+++ +...+.|+.... .-|.+.+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999986665433 22 6899999999999976653 445566663322 33577899999999999
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
|.-++ ....++.+++++|||||.+++-.-...
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 98874 678999999999999999998754433
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=85.93 Aligned_cols=92 Identities=23% Similarity=0.328 Sum_probs=73.4
Q ss_pred ceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCC-CCCCeeEEEeccccc
Q 022305 140 EVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF-EDNSFDVITNVVSVD 209 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l~ 209 (299)
+++|+|||.|....... ....+++++|+++.+++.++ ..++++..|. ..... ..++||+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA---EELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh---hhhccccCCceEEEEEcccee
Confidence 47999999996332222 35689999999999987665 1367888888 44442 567899999999999
Q ss_pred c-cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 210 Y-LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 210 ~-~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+ ..+...+++.+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9 778899999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-10 Score=94.93 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=67.0
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCC--------CCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lp--------f~~~~FD~Vis~ 205 (299)
...+|||+|||+|... +.... +..+++|+|+|+.+ ....++++.+|+ .+.+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~---~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDF---TDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeC---CChhHHHHHHHHhCCCCccEEEcC
Confidence 3468999999999622 22222 34689999999976 223578888898 4432 456789999986
Q ss_pred cccc--------cc---CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVD--------YL---TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~--------~~---~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+.+ |. .+...+++++.++|||||.+++....
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4321 21 12368999999999999999986543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=100.44 Aligned_cols=98 Identities=18% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHHHhh-hcCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCC
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~ 197 (299)
+++.+. +...+|||+|||+|.... ... .+..+|+++|++++|++.+++ +++++.+|. .....+++
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~~~~~~~ 144 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TLGYEENA 144 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCcCC
Confidence 344442 345789999999997332 222 134799999999999987765 377889998 55555678
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.||+|++..+.++++ +++.+.|||||.+++...
T Consensus 145 ~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 145 PYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CcCEEEECCCcccch------HHHHHhhCCCcEEEEEEc
Confidence 999999988766553 467779999999888654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=107.93 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=73.1
Q ss_pred HHHHhhh-cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCCCCCCCCC
Q 022305 130 AIAALTK-YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~~~~lpf~ 195 (299)
+++.+.. ...+|||+|||+|... +....+..+|+++|+|+.|++.++++ ++++..|. .. .++
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~---l~-~~~ 295 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---LS-GVE 295 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc---cc-cCC
Confidence 3444433 2358999999999733 34455778999999999999977642 35666665 22 234
Q ss_pred CCCeeEEEeccccccc---C--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 196 DNSFDVITNVVSVDYL---T--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~---~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++||+|+|+--+|.. . ...+++++++++|||||.++|..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5689999998555543 2 23578999999999999988874
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-10 Score=100.52 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=68.1
Q ss_pred hcCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|||+|||+|..... ... ...+|+++|++++|++.|++ +++++.+|. .......++||+|++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQGWEPLAPYDRIYV 152 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---ccCCcccCCCCEEEE
Confidence 3457899999999973322 221 23579999999999987764 367888888 444444578999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.....+++ +.+.+.|||||.+++.+.
T Consensus 153 ~~~~~~~~------~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 153 TAAGPKIP------EALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCccccc------HHHHHhcCcCcEEEEEEc
Confidence 87665553 567889999999988654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=96.85 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=69.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...++||+|||+|.........+.+++|+|+|++|++.++++ +.++.+|. .+ ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cc-cccccCceEEEECC
Confidence 346899999999974333333378999999999999876331 66778887 33 34556899999875
Q ss_pred ccccc---------------------CCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYL---------------------TKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~---------------------~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+.+. .....+++++.++|||||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 44321 1245689999999999998887654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-11 Score=95.55 Aligned_cols=96 Identities=21% Similarity=0.340 Sum_probs=70.7
Q ss_pred CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC--CCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP--FEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp--f~~~~FD~Vis~~ 206 (299)
.+|||+|||+|+..+..... ..+++|+|+++..++.++. +++++++|. .... +++++||+|+++-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA---RDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH---HHHHHTCTTT-EEEEEE--
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch---hhchhhccCceeEEEEECC
Confidence 47999999999833332222 4899999999999986654 368899998 5554 7789999999985
Q ss_pred cccccC--------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~--------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
-..... ....+++++.++|||||.+++.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 443221 2357899999999999999887653
|
... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-10 Score=97.96 Aligned_cols=120 Identities=18% Similarity=0.318 Sum_probs=73.7
Q ss_pred ccccCcchhhccccHHHHHHhh-----hcCCceeeccCcCCc-----c-cc----CCCCC-CCeEEEEeCCHHHHHhcCC
Q 022305 114 SLFYETPRFVTHIDDPAIAALT-----KYYSEVFPPSNTPGV-----S-HF----PPGYK-QDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 114 ~~~y~~~~~~~~l~~~~~~~l~-----~~~~~vLDiGcG~G~-----~-~~----~~~~~-~~~v~gvD~S~~ml~~a~~ 177 (299)
+.|+..+.....+.+.++..+. ...-+|+.+||++|. . .+ ....+ ..+|+|+|+|+.+|++|++
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp --TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 3466666566666555553222 134589999999996 1 11 11111 4699999999999997753
Q ss_pred ------------------------------------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHHHH
Q 022305 178 ------------------------------------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFK 219 (299)
Q Consensus 178 ------------------------------------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~l~ 219 (299)
.+.|...|+ .+.+...+.||+|+|.++|-|+++. .++++
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~ 159 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCRNVLIYFDPETQQRVLR 159 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--T---T-S------EEEEEE-SSGGGS-HHHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEeccc---CCCCcccCCccEEEecCEEEEeCHHHHHHHHH
Confidence 167888888 4534456789999999999999754 68999
Q ss_pred HHHhhccCCcEEEEEec
Q 022305 220 EMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 220 ei~rvLkpGG~lii~~~ 236 (299)
.+++.|+|||++++...
T Consensus 160 ~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 160 RLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HHGGGEEEEEEEEE-TT
T ss_pred HHHHHcCCCCEEEEecC
Confidence 99999999999999743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-10 Score=98.31 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=73.7
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
..++||+|.|.|.-+...+..-.+|++.++|+.|..+-+++ .+ +.|. .++.-.+.+||+|.|.++|....+|..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~--vl~~---~~w~~~~~~fDvIscLNvLDRc~~P~~ 169 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFT--VLDI---DDWQQTDFKFDVISCLNVLDRCDRPLT 169 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCe--EEeh---hhhhccCCceEEEeehhhhhccCCHHH
Confidence 35799999999974444444457899999999998876553 44 3344 334444678999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEEe
Q 022305 217 VFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~ 235 (299)
.|++|++.|+|+|.+++.+
T Consensus 170 LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHHhCCCCEEEEEE
Confidence 9999999999999888863
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-10 Score=102.99 Aligned_cols=95 Identities=14% Similarity=0.286 Sum_probs=70.8
Q ss_pred CceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec--
Q 022305 139 SEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV-- 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~-- 205 (299)
.+|||+|||+|... +....++.+++|+|+|+.+++.++++ ++++.+|+ .. ++++++||+|+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~-~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FE-PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hc-cCcCCCccEEEECCC
Confidence 58999999999733 33334568999999999999876652 67888887 32 3445589999986
Q ss_pred -----------ccccccC------------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 -----------VSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 -----------~~l~~~~------------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++.|-+ ....+++++.+.|+|||.+++++.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1233322 3457889999999999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-10 Score=106.45 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=77.6
Q ss_pred hhccccHHHHHHhhh------cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC----------------
Q 022305 122 FVTHIDDPAIAALTK------YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------------- 178 (299)
Q Consensus 122 ~~~~l~~~~~~~l~~------~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------------- 178 (299)
+..++...+|..+.+ ...+|||+|||-|.... .....-..++|+|||...|+.|+++
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence 333444445666655 56789999999664222 1222347899999999999876542
Q ss_pred --CcEEEeccCCC---CCCCCCCCCeeEEEeccccccc-C---CHHHHHHHHHhhccCCcEEEEEecCcchH
Q 022305 179 --TEYVVQDLNLN---PKLPFEDNSFDVITNVVSVDYL-T---KPIEVFKEMCQVLKPGGLAIVSFSNRCFW 241 (299)
Q Consensus 179 --~~~~~~D~~~~---~~lpf~~~~FD~Vis~~~l~~~-~---d~~~~l~ei~rvLkpGG~lii~~~~~~~~ 241 (299)
..++.+|.... ..++.....||+|-|.++|||. . ....+|+++.+.|||||+||.++++...+
T Consensus 121 f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 121 FIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp CEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred chhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 34566765210 1122333599999999999998 2 34569999999999999999999886544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-10 Score=101.89 Aligned_cols=96 Identities=11% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec-
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV- 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~- 205 (299)
..+|||+|||+|...+ ....++.+++|+|+|+.+++.|+++ ++++.+|+ .. ++++++||+|+++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~-~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FA-ALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hh-ccCCCCccEEEECC
Confidence 4689999999997333 3334568999999999999877642 56888887 22 2345689999986
Q ss_pred -----cccc-------ccC------------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 -----VSVD-------YLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 -----~~l~-------~~~------------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+. |-+ ....+++++.++|||||.+++++.+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1111 111 1256789999999999999998764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=102.60 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=91.6
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC----CCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP----FEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp----f~~~~FD~ 201 (299)
...+|||+|||+|... +.... ..++|+++|+++.+++.+++ +++++.+|. ..++ +.+++||.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccccccccccCCE
Confidence 3468999999999633 33222 24699999999999987654 267788888 5554 44678999
Q ss_pred EEec------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhh
Q 022305 202 ITNV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMI 259 (299)
Q Consensus 202 Vis~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (299)
|++. .++.+-++ ..++|.++.++|||||.++.++..-.. .+....
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~-------------~Ene~~ 395 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP-------------AENEAQ 395 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-------------hhHHHH
Confidence 9952 34444443 357899999999999998887543111 011122
Q ss_pred HHHHHHHhCCCCCCeeee-cCCCCCCCCCeEEEEEEecC
Q 022305 260 VGAYFHYAGGYEPPQAVD-ISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 260 ~~~~~~~~aGF~~v~~~~-~~~~~~~~~p~~~v~arK~~ 297 (299)
+..++++..+|+...... +-|...+.|-+|+..-+|.+
T Consensus 396 v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 396 IEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKKS 434 (434)
T ss_pred HHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeCC
Confidence 233333333454332111 23334467888888888753
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=96.15 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=75.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------------------CCcEEEeccCCCCCCCCC--
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFE-- 195 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------------------~~~~~~~D~~~~~~lpf~-- 195 (299)
..+||.+|||.|.........+.+|+|+|+|+..++.+.+ .+++.++|+ .+++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~---f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI---FNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC---cCCCcccc
Confidence 4699999999997555555568899999999999987411 378999999 666532
Q ss_pred -CCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 196 -DNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+.||+|+-..++++++ ...++.+.+.++|+|||.+++.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 26899999999999996 3468999999999999966544
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=99.09 Aligned_cols=121 Identities=14% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCcccccCcchhhccccHHHHHHhhhcCCceeeccCcCCc------cccCC----CCCCCeEEEEeCCHHHHHhcCCC--
Q 022305 111 SPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGV------SHFPP----GYKQDRIVGMGMNEEELKRNPVL-- 178 (299)
Q Consensus 111 ~~~~~~y~~~~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~------~~~~~----~~~~~~v~gvD~S~~ml~~a~~~-- 178 (299)
...+.|+..+.....+.+.+... ...-+|+..||++|. ..+.. .....+|+|+|+|+.+|++|++.
T Consensus 91 ineT~FFRd~~~f~~L~~~~~~~--~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y 168 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHARRR--SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIY 168 (287)
T ss_pred CCCCCccCCcHHHHHHHHHHHhc--CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCC
Confidence 34566777765555554332211 123589999999996 11111 11146899999999999966431
Q ss_pred -------------------------------------CcEEEeccCCCCCCCCC-CCCeeEEEecccccccC--CHHHHH
Q 022305 179 -------------------------------------TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLT--KPIEVF 218 (299)
Q Consensus 179 -------------------------------------~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l~~~~--d~~~~l 218 (299)
+.|...|+ ...+++ .+.||+|+|.+++.|++ ...+++
T Consensus 169 ~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL---~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl 245 (287)
T PRK10611 169 RQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNL---LAKQWAVPGPFDAIFCRNVMIYFDKTTQERIL 245 (287)
T ss_pred CHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccC---CCCCCccCCCcceeeHhhHHhcCCHHHHHHHH
Confidence 45666666 343332 57899999999999995 467899
Q ss_pred HHHHhhccCCcEEEEEec
Q 022305 219 KEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~~~ 236 (299)
+.+++.|+|||++++...
T Consensus 246 ~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 246 RRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHhCCCcEEEEeCc
Confidence 999999999999988743
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-09 Score=102.28 Aligned_cols=97 Identities=21% Similarity=0.353 Sum_probs=69.1
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC--CCCCCeeEEEe-
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITN- 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp--f~~~~FD~Vis- 204 (299)
...+|||+|||+|.. ++....++.+|+++|+|+.|++.++++ ++++++|+ ..++ +.+++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccchhhcccCCCCEEEEC
Confidence 456899999999963 333333447999999999999877553 56788888 5543 34678999994
Q ss_pred ---cc--ccc------ccCC----------HHHHHHHHHhhccCCcEEEEEec
Q 022305 205 ---VV--SVD------YLTK----------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ---~~--~l~------~~~d----------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+. ++. |... ..++|+++.++|||||.+++++.
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 22 111 2111 13689999999999999998764
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=93.44 Aligned_cols=154 Identities=14% Similarity=0.240 Sum_probs=96.7
Q ss_pred CCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEE------e-------------------------
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVV------Q------------------------- 184 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~------~------------------------- 184 (299)
...+|||||.+|.. .++.......+.|+||.+..++.|++.+++.. .
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 35799999999973 33334445679999999999998876422111 0
Q ss_pred -ccC-------------CCCCCCCCCCCeeEEEecccccccC------CHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 185 -DLN-------------LNPKLPFEDNSFDVITNVVSVDYLT------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 185 -D~~-------------~~~~lpf~~~~FD~Vis~~~l~~~~------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
|+- .++-+.+....||+|+|..+-.|+. -+..+|+.+.+.|.|||++|++-..+..+.+.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ka 218 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKA 218 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHH
Confidence 000 0012234557899999987766652 36789999999999999999986555555554
Q ss_pred HHhhhh-cCCCch----hhhHHHHHH-HhCCCCCCeeeecCC---CCCCCCCeEEE
Q 022305 245 ISIWTS-TGDADH----VMIVGAYFH-YAGGYEPPQAVDISP---NPGRSDPMYVV 291 (299)
Q Consensus 245 ~~~~~~-~~~~~~----~~~~~~~~~-~~aGF~~v~~~~~~~---~~~~~~p~~~v 291 (299)
...-.. ...+.. ...+++++. ..-||+.++-..... ..+...|+|+.
T Consensus 219 ar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y 274 (288)
T KOG2899|consen 219 ARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLY 274 (288)
T ss_pred HHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeee
Confidence 433311 122222 233445554 337898887666432 23556666654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-09 Score=95.42 Aligned_cols=91 Identities=13% Similarity=-0.015 Sum_probs=66.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|...........+++++|+++++++.+++ +++++.+|. .......++||+|++...+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEccCc
Confidence 45789999999996332221223589999999999987754 267788887 3322234789999998877
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++ .+++.+.|||||.+++.+.
T Consensus 155 ~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhh------hHHHHHhcCCCcEEEEEEc
Confidence 665 3567899999999998765
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-10 Score=95.46 Aligned_cols=127 Identities=18% Similarity=0.311 Sum_probs=83.7
Q ss_pred cCCCcccccCcc--hhhccccHHH-HHHhhhcCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC------
Q 022305 109 DESPDSLFYETP--RFVTHIDDPA-IAALTKYYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV------ 177 (299)
Q Consensus 109 d~~~~~~~y~~~--~~~~~l~~~~-~~~l~~~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~------ 177 (299)
...-+-||-+.. +++..+.+.. +-++.+.-.+|||+|||.|-..+.... -...++|+|.|+.+++.|+.
T Consensus 36 gd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 36 GDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred CCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 333445555432 4444442222 223334445999999999953322221 23569999999999987654
Q ss_pred ---CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc---C-----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 178 ---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL---T-----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 178 ---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~---~-----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.++|.+.|+ ..-.+..++||+|+--.++.-+ + .+..++..+.++|+|||.|+|.-.|.
T Consensus 116 ~~n~I~f~q~DI---~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 116 FSNEIRFQQLDI---TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CCcceeEEEeec---cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 289999999 5557788999999965554443 1 23457888999999999999975543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=101.47 Aligned_cols=95 Identities=12% Similarity=0.203 Sum_probs=69.5
Q ss_pred CceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 139 SEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
.+|||+|||+|... +....+..+|+|+|+|+.+++.|+++ ++++.+|+ .. ++++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~---~~-~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL---FA-ALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch---hh-hCCCCCccEEEECCC
Confidence 58999999999733 33344678999999999999876542 67888887 32 23456899999871
Q ss_pred -----c-------ccccCC------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 -----S-------VDYLTK------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 -----~-------l~~~~d------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++|-+. ...+++++.++|||||.+++++.+
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 112111 247789999999999999998764
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-09 Score=99.41 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=68.8
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC-----C--cE--EEeccCCCCCCCC--CCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL-----T--EY--VVQDLNLNPKLPF--EDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~-----~--~~--~~~D~~~~~~lpf--~~~~FD~Vi 203 (299)
...+|||+|||+|. .++....+.++|+|+|+|+++++.++++ + .+ ..+|. ...++ ++++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccccccccccccCEEE
Confidence 44689999999996 3333333467999999999999876553 2 22 34454 33333 567899999
Q ss_pred ec------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+. .++++.++ ..++|.++.++|||||.++.++..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 42 34555444 257999999999999999988654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-09 Score=100.51 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=68.0
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCC-CCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF-EDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l 208 (299)
.++||+|||+|...+ ....+..+++|+|+|+.|++.++++ ++++.+|+ .+..+ .+++||+|+|+-
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl---~e~~l~~~~~FDLIVSNP-- 327 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSW---FDTDMPSEGKWDIIVSNP-- 327 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch---hccccccCCCccEEEECC--
Confidence 589999999997433 3345678999999999999977653 67888887 33322 245799999963
Q ss_pred cccC-----------------------C----HHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLT-----------------------K----PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~-----------------------d----~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.|++ | ..++++++.+.|+|||.++++..
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1211 1 23667777889999999988765
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=92.95 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=68.2
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|.. .+....+..+++|+|+|+.+++.+++ +++++.+|+ .. ++.+++||+|+++-
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~-~~~~~~fD~Iv~np 183 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FE-PLPGGRFDLIVSNP 183 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cC-cCCCCceeEEEECC
Confidence 346899999999963 23333456899999999999987654 367788887 22 23367899999852
Q ss_pred cc------c--------c------------cCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SV------D--------Y------------LTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l------~--------~------------~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
-. + | +.....+++++.++|||||.++++..
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 11 1 1 01235688889999999999999753
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-09 Score=99.56 Aligned_cols=100 Identities=23% Similarity=0.324 Sum_probs=70.7
Q ss_pred HHHHHhhhcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-----CcE-EEeccCCCCCCCCCC-CCee
Q 022305 129 PAIAALTKYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-----TEY-VVQDLNLNPKLPFED-NSFD 200 (299)
Q Consensus 129 ~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-----~~~-~~~D~~~~~~lpf~~-~~FD 200 (299)
..++.+.+...++||+|||+|...++....+ .+++|+|+.|.+++.++++ ++- ...-.. ..+.... ++||
T Consensus 154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~--~~~~~~~~~~~D 231 (300)
T COG2264 154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF--LLLEVPENGPFD 231 (300)
T ss_pred HHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc--cchhhcccCccc
Confidence 3455555677899999999998776665555 4699999999999988775 221 011110 1122333 5899
Q ss_pred EEEecccccccCCH-HHHHHHHHhhccCCcEEEEE
Q 022305 201 VITNVVSVDYLTKP-IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 201 ~Vis~~~l~~~~d~-~~~l~ei~rvLkpGG~lii~ 234 (299)
+|+++- +.++ ..+..++++.|||||++|++
T Consensus 232 vIVANI----LA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 232 VIVANI----LAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred EEEehh----hHHHHHHHHHHHHHHcCCCceEEEE
Confidence 999995 2233 46778999999999999997
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-09 Score=94.09 Aligned_cols=96 Identities=20% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
..+|||+|||+|...+ ....+..+|+|+|+|+.|++.++++ ++++.+|+ ..+.. +++||+|+++--+.|.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~---~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDV---FEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECch---hhhcc-cCCCcEEEEcCCccccC
Confidence 4689999999996433 2223357999999999999988763 78899998 55543 46899999987777753
Q ss_pred C--------------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 213 K--------------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 213 d--------------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ..+.++...++|+|+|.+++-+..
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 1 246778889999999977776554
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=98.12 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=68.0
Q ss_pred CCceeeccCcCCcc--ccCCCC-CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEec-
Q 022305 138 YSEVFPPSNTPGVS--HFPPGY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV- 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~-~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~- 205 (299)
..+|||+|||+|.. ++.... ...+|+++|+|+.|++.++++ ++++.+|+ ..++ ++++||+|++-
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cccc-cCCCCCEEEEcC
Confidence 46899999999962 222222 346999999999999876542 57788888 5554 46789999942
Q ss_pred ---c--ccc------ccCC----------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ---V--SVD------YLTK----------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ---~--~l~------~~~d----------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++. |..+ ..++|.++.++|||||.+++++..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1 111 1111 236899999999999999998654
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.8e-09 Score=94.36 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=70.4
Q ss_pred cCCceeeccCcCCcccc-CCCC-CCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGY-KQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~-~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
...+||++|||.|.... .... ...+|++||+++++++.+++ +++++.+|.. .-+...+++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH--HHHhhCCCcccE
Confidence 45789999999886322 2233 34689999999999987764 2567778862 122334678999
Q ss_pred EEecccccccCC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++...-.+.+. ..++++++++.|||||.+++...+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998754443322 267889999999999999886443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-08 Score=83.59 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=75.9
Q ss_pred HHHh-hhcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCe
Q 022305 131 IAAL-TKYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 131 ~~~l-~~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
+..| .+.-+.++|+|||+|.-.+. ...+.++++++|-++++++..++ +++.+.+|+- +.|+-.+ +|
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~~-~~ 103 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDLP-SP 103 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCCC-CC
Confidence 3444 34567899999999973333 44678999999999999885544 3677888872 3333222 79
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|.|+...+ .+.+.+|+.+...|||||.+++.....
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 99999887 467899999999999999999976543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=89.39 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=88.2
Q ss_pred CcccccCcchhhccccHHHHHHhhh----cCCceeeccCcCCc----------cccC-CCCCCCeEEEEeCCHHHHHhcC
Q 022305 112 PDSLFYETPRFVTHIDDPAIAALTK----YYSEVFPPSNTPGV----------SHFP-PGYKQDRIVGMGMNEEELKRNP 176 (299)
Q Consensus 112 ~~~~~y~~~~~~~~l~~~~~~~l~~----~~~~vLDiGcG~G~----------~~~~-~~~~~~~v~gvD~S~~ml~~a~ 176 (299)
..++|+..|.....+.+.++..+.+ ..-+|+.+||++|. -.+. ......+|+|+|||..+|+.|+
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 4455677766666666666766632 24589999999996 1111 1123579999999999999775
Q ss_pred CC-------------------------------------CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHH
Q 022305 177 VL-------------------------------------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEV 217 (299)
Q Consensus 177 ~~-------------------------------------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~ 217 (299)
.. +.|...|+ ..-++..+.||+|+|.+||-|++.+ .++
T Consensus 147 ~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NL---l~~~~~~~~fD~IfCRNVLIYFd~~~q~~i 223 (268)
T COG1352 147 AGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNL---LDDSPFLGKFDLIFCRNVLIYFDEETQERI 223 (268)
T ss_pred cCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCC---CCCccccCCCCEEEEcceEEeeCHHHHHHH
Confidence 41 55666666 3333245669999999999999754 679
Q ss_pred HHHHHhhccCCcEEEEEec
Q 022305 218 FKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 218 l~ei~rvLkpGG~lii~~~ 236 (299)
++.++..|+|||++++...
T Consensus 224 l~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 224 LRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred HHHHHHHhCCCCEEEEccC
Confidence 9999999999999999744
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=96.33 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=67.2
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vi 203 (299)
...+|||+|||+|... +.... +.++|+++|+++.+++.+++ +++++++|+ ..++ ++ ++||+|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccchhc-ccCCEEE
Confidence 3468999999999633 22222 45799999999999987654 267888888 5542 33 7899999
Q ss_pred ecc------cccccCC----------------HHHHHHHHHhhccCCcEEEEEec
Q 022305 204 NVV------SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 204 s~~------~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.- ++.+-++ ...+|+++.++|||||.++.++.
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 641 1221111 13579999999999999987653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-08 Score=91.37 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=68.0
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCC-CCCCeeEEEecc----
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPF-EDNSFDVITNVV---- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf-~~~~FD~Vis~~---- 206 (299)
.++||+|||+|...+ ....++.+++|+|+|+.+++.++++ .+++.+|+. ..++- ..++||+|+++-
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~--~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLY--DALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeech--hhcchhcCCCEeEEEECCCCCC
Confidence 479999999997333 3334567999999999999987764 578888872 12221 135799999872
Q ss_pred --ccccc----------------CC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 --SVDYL----------------TK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 --~l~~~----------------~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+..+ .| ..++++.+.++|||||.+++++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11111 01 246778888999999999998653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-09 Score=96.39 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCe
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~F 199 (299)
-.+++.+.....+|||+|||+|...+.....+ .+|+|+|+++.+++.|+++ ..+.+... .. .....|
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~--~~~~~~ 226 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---ED--LVEGKF 226 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SC--TCCS-E
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---cc--cccccC
Confidence 34455555566799999999998555444444 5799999999999987764 22322221 22 234889
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
|+|+++-..+- +...+..+.+.|||||++|++=.-. +....+.+.+. . ||..++...
T Consensus 227 dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~----------------~~~~~v~~a~~-~-g~~~~~~~~-- 283 (295)
T PF06325_consen 227 DLVVANILADV---LLELAPDIASLLKPGGYLILSGILE----------------EQEDEVIEAYK-Q-GFELVEERE-- 283 (295)
T ss_dssp EEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG----------------GGHHHHHHHHH-T-TEEEEEEEE--
T ss_pred CEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH----------------HHHHHHHHHHH-C-CCEEEEEEE--
Confidence 99999864432 3567788999999999999972100 11122333343 3 898766543
Q ss_pred CCCCCCCCeEEEEEEec
Q 022305 280 PNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 280 ~~~~~~~p~~~v~arK~ 296 (299)
.+-+..++++|+
T Consensus 284 -----~~~W~~l~~~Kk 295 (295)
T PF06325_consen 284 -----EGEWVALVFKKK 295 (295)
T ss_dssp -----ETTEEEEEEEE-
T ss_pred -----ECCEEEEEEEeC
Confidence 246777777774
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-08 Score=95.71 Aligned_cols=98 Identities=16% Similarity=0.268 Sum_probs=70.0
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vis 204 (299)
...+|||+|||+|. .++.... ...+|+++|+|+.+++.++++ ++++++|. ..++ +.+++||.|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhhhhhhhccCCEEEE
Confidence 34689999999996 3333322 357999999999999876543 56788888 5665 45678999995
Q ss_pred c------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 V------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. .++..-++ ..++|.++.+.|||||.++.++..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 11221121 246789999999999999888654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-09 Score=93.65 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=70.3
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|.. .+....+..+++++|+++++++.|++ +++++.+|.. +.+.-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~--~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA--EYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH--HHHHhCCCCCCEEEEe
Confidence 456899999999973 33445578899999999999987654 2567888862 1223234689999975
Q ss_pred cc-ccccC---CHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VS-VDYLT---KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~-l~~~~---d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.. -...+ ...++++++.++|+|||.+++...
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 21 11111 136899999999999999998643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-08 Score=90.65 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=68.0
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC---------------CCcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~---------------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
...+||++|||.|... +....+..+|++||++++|++.|++ +++++.+|.. .-+.-.++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH--HHHHhcCCCc
Confidence 4569999999988522 2222234799999999999998774 2667778872 2234446789
Q ss_pred eEEEeccccc---ccCC--HHHHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVD---YLTK--PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~---~~~d--~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+|++...-. .... -.++++.+++.|+|||.+++...
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999874211 0111 15689999999999999888633
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-09 Score=97.06 Aligned_cols=95 Identities=35% Similarity=0.472 Sum_probs=82.4
Q ss_pred cCCceeeccCcCC-ccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPG-VSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G-~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+++|+|||-| ...+......+.++|+|.++..+.++.. +..++.+|+ .+.||+++.||.+-+..
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~---~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF---GKMPFEDNTFDGVRFLE 186 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh---hcCCCCccccCcEEEEe
Confidence 4457999999944 5666667778999999999998887654 255688899 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.+|.+++..+++|++|++||||+++..
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999999885
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-08 Score=100.23 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=67.2
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
.+|||+|||+|...+ ....++.+++|+|+|+.+++.|+++ ++++.+|+ .. ++++++||+|+|+-
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hh-hCcCCCccEEEECCC
Confidence 479999999997333 3345678999999999999977653 56677776 22 23456899999852
Q ss_pred -------------cccccC--------C----HHHHHHHHHhhccCCcEEEEEec
Q 022305 207 -------------SVDYLT--------K----PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 -------------~l~~~~--------d----~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+..|-+ | ...+++++.++|||||.+++++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 111211 1 23567888999999999999865
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-08 Score=98.94 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=71.4
Q ss_pred hcCCceeeccCcCCcccc-CCCCCC-CeEEEEeCCHHHHHhcCC---------------CCcEEEeccCCCCC-CCCCCC
Q 022305 136 KYYSEVFPPSNTPGVSHF-PPGYKQ-DRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPK-LPFEDN 197 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~-~~~~~~-~~v~gvD~S~~ml~~a~~---------------~~~~~~~D~~~~~~-lpf~~~ 197 (299)
+..++|||+|||+|.... ..+++. .+++++|++++|++.+++ +++++.+|. .+ +...++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da---~~~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA---FNWLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH---HHHHHhCCC
Confidence 345789999999996222 223344 799999999999998776 256677777 33 233457
Q ss_pred CeeEEEecccccccCCH-----HHHHHHHHhhccCCcEEEEEecC
Q 022305 198 SFDVITNVVSVDYLTKP-----IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~-----~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+||+|++...-.+.+.. .++++++++.|||||.+++...+
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 89999998554333222 46899999999999999987543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=80.43 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=94.7
Q ss_pred ceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh-------cC-CC-CcEEEeccCCCCCCC------CCCCCeeEE
Q 022305 140 EVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR-------NP-VL-TEYVVQDLNLNPKLP------FEDNSFDVI 202 (299)
Q Consensus 140 ~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~-------a~-~~-~~~~~~D~~~~~~lp------f~~~~FD~V 202 (299)
+||+||||+|. .+++..++.....-.|+.+..+.. +. .+ ..-+..|+.. ...+ +..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~-~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA-PPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC-CCCccccccccCCCCccee
Confidence 49999999997 777778888888888988877531 11 11 2234556521 1122 235689999
Q ss_pred EecccccccC--CHHHHHHHHHhhccCCcEEEEEecC----c--chHHHHHHhhhhcC----CCchhhhHHHHHHHhCCC
Q 022305 203 TNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN----R--CFWTKAISIWTSTG----DADHVMIVGAYFHYAGGY 270 (299)
Q Consensus 203 is~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~----~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~aGF 270 (299)
+|.+++|-.+ ..+.+|+.+.++|+|||.+++==|- . ..-...++.+.... +...+..+.. +..+.|+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~-lA~~~GL 185 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA-LAAAHGL 185 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH-HHHHCCC
Confidence 9999998775 4578999999999999988873111 0 11123334444332 2233333333 3367999
Q ss_pred CCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 271 EPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 271 ~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
+..+.++.+.+ ...++.||
T Consensus 186 ~l~~~~~MPAN------N~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPAN------NLLLVFRK 204 (204)
T ss_pred ccCcccccCCC------CeEEEEeC
Confidence 99988887753 45566655
|
The function of this family is unknown. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-08 Score=93.86 Aligned_cols=90 Identities=20% Similarity=0.105 Sum_probs=65.2
Q ss_pred cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|.... ..... ...|+++|++++|++.|++ ++.++.+|. ...+...++||+|++.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~---~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG---YYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh---hhcccccCCccEEEEC
Confidence 34689999999996322 22222 2479999999999987654 367788887 5555455789999998
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..+++++ ..+.+.|||||.+++..
T Consensus 157 ~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH------HHHHHhcCCCCEEEEEe
Confidence 7666543 34678999999887753
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-08 Score=84.01 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=59.0
Q ss_pred HHHHHHhhhcC--CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 128 DPAIAALTKYY--SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 128 ~~~~~~l~~~~--~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+.+++.+.+.. ..|-|+|||.+. ++...+ ..+|...|+-.. +-.++.+|+ .++|+++++.|++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~--la~~~~~~~~V~SfDLva~-------n~~Vtacdi---a~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAK--LAKAVPNKHKVHSFDLVAP-------NPRVTACDI---ANVPLEDESVDVAVF 128 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-H--HHHH--S---EEEEESS-S-------STTEEES-T---TS-S--TT-EEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCchHH--HHHhcccCceEEEeeccCC-------CCCEEEecC---ccCcCCCCceeEEEE
Confidence 44566665433 468999998774 222222 357999998653 346889999 899999999999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.+|.-. |...+++|.+|+|||||.+.|.
T Consensus 129 cLSLMGT-n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 129 CLSLMGT-NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp ES---SS--HHHHHHHHHHHEEEEEEEEEE
T ss_pred EhhhhCC-CcHHHHHHHHheeccCcEEEEE
Confidence 9888764 8999999999999999987765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=81.46 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=96.2
Q ss_pred hcCCceeeccCcCCc--cccCC-CCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPP-GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~-~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
....+|||.|.|+|. ..++. ..+.++|+..|+-++.++.|+++ +++..+|+ .+.-+++ .||+|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv---~~~~~~~-~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV---REGIDEE-DVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc---ccccccc-ccCEEE
Confidence 456899999999996 22232 33568999999999999998874 56677887 4554544 799997
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCC--
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN-- 281 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~-- 281 (299)
.- ++||.++++.++.+|||||.+++=.|+-+...+.... + ++.||..++.+++-..
T Consensus 169 LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~----------------l-~~~g~~~ie~~E~l~R~~ 226 (256)
T COG2519 169 LD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEA----------------L-RERGFVDIEAVETLVRRW 226 (256)
T ss_pred Ec-----CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------------H-HhcCccchhhheeeehee
Confidence 64 6899999999999999999988866654322222111 1 3346777766665322
Q ss_pred --------C---CCCCCeEEEEEEecCC
Q 022305 282 --------P---GRSDPMYVVYSRKAST 298 (299)
Q Consensus 282 --------~---~~~~p~~~v~arK~~~ 298 (299)
| .-...-|++.+||.++
T Consensus 227 ~v~~~~~RP~~~~v~HTgyivf~R~~~~ 254 (256)
T COG2519 227 EVRKEATRPETRMVGHTGYIVFARKLGG 254 (256)
T ss_pred eecccccCcccccccceeEEEEEeeccC
Confidence 1 1234569999999864
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=83.57 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=70.5
Q ss_pred HHHHHHhhhcC--CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 128 DPAIAALTKYY--SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 128 ~~~~~~l~~~~--~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+.+++.|.... ..|-|+|||.+.... . ....|+..|+-+ .+-+++.+|+ .++|++|++.|+++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~--~-~~~kV~SfDL~a-------~~~~V~~cDm---~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS--S-ERHKVHSFDLVA-------VNERVIACDM---RNVPLEDESVDVAVFC 235 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh--c-cccceeeeeeec-------CCCceeeccc---cCCcCccCcccEEEee
Confidence 44555554333 458899998763222 1 235788888744 2357889999 8999999999999998
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+|.- .|+..+++|++|+|||||.+.|.
T Consensus 236 LSLMg-tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 236 LSLMG-TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred Hhhhc-ccHHHHHHHHHHHhccCceEEEE
Confidence 88764 58999999999999999988875
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-08 Score=88.14 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=77.8
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-C-cEEEeccCCCCCCCCCCCCeeEEEecccccccC---
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--- 212 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~-~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~--- 212 (299)
-.-++|+|||.|- +.-..+.+-++|.|++...+..+++. . ....+|+ .++|+.+.+||.+++..++||+.
T Consensus 46 gsv~~d~gCGngk--y~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~---l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 46 GSVGLDVGCGNGK--YLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADA---LKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred cceeeecccCCcc--cCcCCCcceeeecchhhhhccccccCCCceeehhhh---hcCCCCCCccccchhhhhhhhhhhHH
Confidence 3578999999884 33333778899999999999988875 3 5888999 89999999999999999999995
Q ss_pred CHHHHHHHHHhhccCCcEEEEE
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~ 234 (299)
....+++|+.|+|||||...+-
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEE
Confidence 4578999999999999976554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-08 Score=86.79 Aligned_cols=94 Identities=20% Similarity=0.295 Sum_probs=70.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------------------CCcEEEeccCCCCCCCCCC-
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFED- 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------------------~~~~~~~D~~~~~~lpf~~- 196 (299)
..+||.+|||.|.........+.+|+|+|+|+.+++.+.+ ++++.++|+ ..++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf---F~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF---FELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T---TTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc---ccCChhhc
Confidence 3589999999997555444457899999999999987511 146788998 6665443
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEE-EEE
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLA-IVS 234 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~l-ii~ 234 (299)
++||+|+=..+++-++ ...++.+.+.++|||||.+ ++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5899999777777774 5678999999999999973 444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.7e-08 Score=88.38 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=66.8
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+||++|||.|.. .+....+..+++++|+++++++.+++. ++++.+|.. .-+...+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhCCCCccEE
Confidence 346999999998862 222222357899999999999877652 345555541 1122225789999
Q ss_pred EecccccccC--C--HHHHHHHHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYLT--K--PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~~--d--~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++......-+ + ..++++.+.+.|+|||.+++...
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9865432222 2 36889999999999999988644
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=79.38 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=64.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..++||+|||.|...........+++++|+++.|++.+++ +++++.+|+ .++++++++||.|+++.-. |+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~---~~~~~~~~~~d~vi~n~Py-~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA---LKFDLPKLQPYKVVGNLPY-NI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch---hcCCccccCCCEEEECCCc-cc
Confidence 3589999999997433333336799999999999987654 367899999 7888877789999987543 33
Q ss_pred CCHHHHHHHHHhh--ccCCcEEEEE
Q 022305 212 TKPIEVFKEMCQV--LKPGGLAIVS 234 (299)
Q Consensus 212 ~d~~~~l~ei~rv--LkpGG~lii~ 234 (299)
. ...+..+.+. +.++|.+++.
T Consensus 90 ~--~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S--TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H--HHHHHHHHhcCCCcceEEEEEE
Confidence 2 2333333322 4578888886
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=84.31 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=63.7
Q ss_pred CCceeeccCcCCccccCC-----CCCCCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPP-----GYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~-----~~~~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|...+.. ..+..+|+|+|+++.|++.|+++ +.++.+|+ ...++ +++||+||++==..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~---~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADA---LTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcch---hcccc-cCCccEEEECCCCC
Confidence 469999999999733321 11346999999999999999875 68899998 55554 56899999882111
Q ss_pred ----------cc--CCHHHHHHHHHhhccCCcE
Q 022305 210 ----------YL--TKPIEVFKEMCQVLKPGGL 230 (299)
Q Consensus 210 ----------~~--~d~~~~l~ei~rvLkpGG~ 230 (299)
|- .-...+++...++++||+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 10 1135688888897777775
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-07 Score=84.38 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=68.1
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|... +.... ....|+++|+++.+++.++++ ++++..|. ..++...+.||.|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG---RVFGAAVPKFDAILLD 147 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH---HHhhhhccCCCEEEEc
Confidence 4468999999999633 22222 236899999999999866542 56777787 5555555679999952
Q ss_pred ----c--cccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ----V--SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ----~--~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++.+-++ ..++|+++.+.|||||.++.++..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 1221111 235899999999999999888654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-08 Score=97.96 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEE-----eCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEeccccc-c
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGM-----GMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-Y 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gv-----D~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~-~ 210 (299)
...+||+|||.|+ +...+...+|+.+ |..+.+++.|-++ +-...+-+ ....|||++++||+|.|+.++. |
T Consensus 118 iR~~LDvGcG~aS--F~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~-~s~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 118 IRTALDVGCGVAS--FGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVL-GSQRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred eEEEEeccceeeh--hHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhh-ccccccCCccchhhhhcccccccc
Confidence 4568999998875 2222222334443 4445566666543 22222221 0178999999999999987754 4
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+-..+|-|+.|+|||||+++++-+.
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhcccceeehhhhhhccCceEEecCCc
Confidence 555567899999999999999998654
|
; GO: 0008168 methyltransferase activity |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.7e-08 Score=86.63 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=70.7
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|+|+|+|.|. ..+...+|+.+++..|+ |+.++.+++ +++++.+|+ . -+++. +|+++..++||+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~---f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDF---F-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-T---T-TCCSS--ESEEEEESSGGGS-
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccH---H-hhhcc--ccceeeehhhhhcc
Confidence 45689999999996 45566778899999999 778775543 689999998 4 45554 99999999999997
Q ss_pred CH--HHHHHHHHhhccCC--cEEEEE
Q 022305 213 KP--IEVFKEMCQVLKPG--GLAIVS 234 (299)
Q Consensus 213 d~--~~~l~ei~rvLkpG--G~lii~ 234 (299)
|. .++|+++++.|+|| |.++|.
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 54 57899999999999 977664
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=85.51 Aligned_cols=90 Identities=19% Similarity=0.334 Sum_probs=63.8
Q ss_pred ceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 140 EVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 140 ~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
+|||+|||+|...+ ....+..+|+|+|+|+.+++.|+++ +.++..|.. + +. .++||+|+||= .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf--~--~~-~~~fDlIVsNP--P 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF--E--PL-RGKFDLIVSNP--P 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc--c--cc-CCceeEEEeCC--C
Confidence 69999999997444 4444567999999999999988764 223444541 1 22 23899999881 1
Q ss_pred ccC-------------C--------------HHHHHHHHHhhccCCcEEEEEec
Q 022305 210 YLT-------------K--------------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 210 ~~~-------------d--------------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|++ + ..+++.++.+.|+|||.++++..
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 111 1 23678889999999999999865
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.9e-08 Score=85.38 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=68.3
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCC-----CCCCCe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-----FEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lp-----f~~~~F 199 (299)
...+|||+|||+|.+.+ .... ..++++++|+++++++.|+++ ++++.+|+. +.++ .++++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~--~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL--SALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH--HHHHHHHhCCCCCCC
Confidence 35789999999997443 3233 357999999999999877652 678888872 2222 124689
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-.- -+....++.++.+.|||||.++++
T Consensus 146 D~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987532 134568899999999999998886
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.1e-07 Score=81.78 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHhhh-cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCC
Q 022305 130 AIAALTK-YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNS 198 (299)
Q Consensus 130 ~~~~l~~-~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~ 198 (299)
+++.+.. ...+|||+|||.|. ..+....|..+++.+|+|..+++.++++ ..++..|. ..+.++ +
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~----~~~v~~-k 224 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL----YEPVEG-K 224 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc----cccccc-c
Confidence 4555543 34589999999997 4445566788999999999999988874 23455554 334444 8
Q ss_pred eeEEEecccccccCC-----HHHHHHHHHhhccCCcEEEEEec
Q 022305 199 FDVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 199 FD~Vis~~~l~~~~d-----~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
||+|+|+==+|-=.+ -.+++++..+.|++||.+.|...
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999965553322 24789999999999997766533
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-07 Score=80.38 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-----C---CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-----L---TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-----~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+.||.|+|-|. ..++.. ...+|.-||+++..++.|++ . .++.+.-+ +++..++++||+|++-++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL---Q~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL---QDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G---GG----TT-EEEEEEES-
T ss_pred cceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH---hhccCCCCcEeEEEehHh
Confidence 4679999999885 223322 25789999999999998873 1 45556666 555445679999999999
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcC--CCchhhhHHHHHHHhCCCCCCeeeecCCCCC
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTG--DADHVMIVGAYFHYAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~ 283 (299)
+.|+. |..++|+.+...|+|+|.+++-......- ...+.... -......+.+.|+ .||++.++...-..-|.
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~---~~~~D~~DsSvTRs~~~~~~lF~-~AGl~~v~~~~Q~~fP~ 207 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG---FDEFDEEDSSVTRSDEHFRELFK-QAGLRLVKEEKQKGFPK 207 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS---EEEEETTTTEEEEEHHHHHHHHH-HCT-EEEEEEE-TT--T
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC---CcccCCccCeeecCHHHHHHHHH-HcCCEEEEeccccCCCc
Confidence 99997 56799999999999999999863321100 00111110 0112234555564 49999887655544444
Q ss_pred CCCCeE
Q 022305 284 RSDPMY 289 (299)
Q Consensus 284 ~~~p~~ 289 (299)
..-|.+
T Consensus 208 ~L~pV~ 213 (218)
T PF05891_consen 208 ELYPVR 213 (218)
T ss_dssp TS-EEE
T ss_pred cceEEE
Confidence 444443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-07 Score=82.63 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=71.8
Q ss_pred ceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCC-CC--CCCCCeeEEEecc
Q 022305 140 EVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LP--FEDNSFDVITNVV 206 (299)
Q Consensus 140 ~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~-lp--f~~~~FD~Vis~~ 206 (299)
-+||+|||.|. ..++...|+..++|+|++...+..+.+ ++.++.+|+ .. +. ++++++|.|+.++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da---~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA---RELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C---TTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH---HHHHhhcccCCchheEEEeC
Confidence 68999999996 445567788999999999998876543 478889998 44 32 5679999999876
Q ss_pred cccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 207 SVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 207 ~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
-=.|... -..++.++.++|||||.+.+.+.+.......
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~ 142 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM 142 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 5444431 1489999999999999999887665544433
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=80.94 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=74.1
Q ss_pred ccHHHHHHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCC-C
Q 022305 126 IDDPAIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF-E 195 (299)
Q Consensus 126 l~~~~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf-~ 195 (299)
+...+++.| .+...+||+||||+|...-..+.-..+|+.+|..++..+.|++ ++.++++|.. ..+ +
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~----~G~~~ 135 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS----KGWPE 135 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc----cCCCC
Confidence 334456666 3566899999999996222222223499999999999998876 3778889973 333 3
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...||.|+...+...++ +.+.+-|||||.+++-+.
T Consensus 136 ~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 47899999998888776 346778999999988655
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-07 Score=70.44 Aligned_cols=94 Identities=30% Similarity=0.449 Sum_probs=68.9
Q ss_pred eeeccCcCCccc-cCCCCC-CCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCC--CCCCC-CCeeEEEeccc
Q 022305 141 VFPPSNTPGVSH-FPPGYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK--LPFED-NSFDVITNVVS 207 (299)
Q Consensus 141 vLDiGcG~G~~~-~~~~~~-~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~--lpf~~-~~FD~Vis~~~ 207 (299)
++|+|||.|... +..... ...++|+|+++.|++.++.. +.+...|. .. +++.+ ..||++.+...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA---LGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc---ccCCCCCCCCCceeEEeeeee
Confidence 999999999632 222212 24899999999999874432 36777777 44 78877 58999944444
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.++.. +...+.++.++|+|+|.+++.....
T Consensus 129 ~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44444 8999999999999999998886653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.1e-08 Score=98.74 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=69.1
Q ss_pred CCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCC-CCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPK-LPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~-lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|...+.....++ +|+++|+|+.+++.++++ ++++++|+ .+ +.-..++||+|++.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~---~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC---LAWLKEAREQFDLIFID 615 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH---HHHHHHcCCCcCEEEEC
Confidence 46899999999985554444444 699999999999977652 56788887 32 21115689999985
Q ss_pred -----------ccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 -----------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 -----------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+.....+...++..+.++|+|||.++++..
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1122233556788899999999999888643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=90.34 Aligned_cols=107 Identities=18% Similarity=0.186 Sum_probs=72.1
Q ss_pred ccHHHHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCC-CCCCCC
Q 022305 126 IDDPAIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLN-PKLPFE 195 (299)
Q Consensus 126 l~~~~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~-~~lpf~ 195 (299)
+.+.+++.+. ....+|||+|||+|...+.......+|+|+|+|++|++.|++ +++++.+|+... ..+++.
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhh
Confidence 3334444442 234689999999998555444445799999999999987764 367899998310 123455
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++||+|++.- .+. ...+.++.+.+ ++|++.++++..
T Consensus 365 ~~~fD~Vi~dP--Pr~-g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 365 LGGFDKVLLDP--PRA-GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCCCEEEECc--CCc-ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 67899998752 222 23455666655 699999999864
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-08 Score=84.64 Aligned_cols=100 Identities=23% Similarity=0.200 Sum_probs=65.9
Q ss_pred HHHHHHh-hhcCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCC
Q 022305 128 DPAIAAL-TKYYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 128 ~~~~~~l-~~~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~ 195 (299)
..+++.+ .+.-.+|||+|||+|...- ... -+...|+++|+.+.+.+.|+++ +.++++|. ..---+
T Consensus 62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg---~~g~~~ 138 (209)
T PF01135_consen 62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG---SEGWPE 138 (209)
T ss_dssp HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G---GGTTGG
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch---hhcccc
Confidence 3345555 3456799999999995211 111 1335799999999999988763 67899997 322224
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...||.|++......++ ..+.+.||+||.+++-+.
T Consensus 139 ~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 56899999998876553 346778999999988654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-07 Score=79.78 Aligned_cols=97 Identities=12% Similarity=0.277 Sum_probs=68.7
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCC--CCCCCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNL--NPKLPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~--~~~lpf~~~~FD~Vis~ 205 (299)
..+||+|||+|. ..+...++.+.+++||.|+.+++.|.++ +..+.-++.. ....+..++.+|+++|+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 369999999997 3445566789999999999999877664 4444333311 13334567899999988
Q ss_pred ccccccC----------------------------CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVDYLT----------------------------KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~----------------------------d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
= .|+. ....++.-+.|.|+|||.+.+++..
T Consensus 230 P--PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 230 P--PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred C--CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 2 2221 1235667789999999999998764
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.7e-07 Score=82.24 Aligned_cols=97 Identities=25% Similarity=0.337 Sum_probs=76.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCc--------EEE-eccCCCCCCCCCCCCeeEEEecc-
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTE--------YVV-QDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~--------~~~-~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
....+||+=||+|...+...+-+++++|.|++..|++-++.+.+ +.. +|+ .++|+++++||.|++--
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da---~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA---TNLPLRDNSVDAIATDPP 273 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc---ccCCCCCCccceEEecCC
Confidence 34589999999999888888889999999999999998887622 233 388 89999999999999531
Q ss_pred ----c---ccccCC-HHHHHHHHHhhccCCcEEEEEec
Q 022305 207 ----S---VDYLTK-PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ----~---l~~~~d-~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+ ..-+++ ..++|+.+.++||+||.+++..+
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 111122 36899999999999999998755
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-07 Score=83.58 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=67.8
Q ss_pred hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCC-C-CCCCC
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL-P-FEDNS 198 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~l-p-f~~~~ 198 (299)
....+||++|||.|. ..+. .++ ..+|+.+|+++.+++.+++ +++++.+|. ... . .++++
T Consensus 90 ~~pkrVLiIGgG~G~~~rell-k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da---~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA-RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG---VEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH---HHHHhhccCCC
Confidence 346799999999886 2222 333 3689999999999987654 366778886 221 1 23568
Q ss_pred eeEEEecccccccCC----HHHHHHHHHhhccCCcEEEEEe
Q 022305 199 FDVITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 199 FD~Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~ 235 (299)
||+|++-..-.+.+. -.++++.+++.|+|||.+++..
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 999998654333221 2478999999999999987753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.6e-07 Score=94.88 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=67.2
Q ss_pred CceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC------------------------CCcEEEeccCCCCCC
Q 022305 139 SEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV------------------------LTEYVVQDLNLNPKL 192 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~------------------------~~~~~~~D~~~~~~l 192 (299)
.+|||+|||+|...+ ....+..+|+|+|+|+.+++.|++ +++++++|+ ...
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl---~~~ 196 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDL---LGY 196 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECch---hhh
Confidence 479999999997433 334456799999999999986622 367888887 322
Q ss_pred CCCC--CCeeEEEec--------------ccccc------------c--------CC----HHHHHHHHHhhccCCcEEE
Q 022305 193 PFED--NSFDVITNV--------------VSVDY------------L--------TK----PIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 193 pf~~--~~FD~Vis~--------------~~l~~------------~--------~d----~~~~l~ei~rvLkpGG~li 232 (299)
+.+ ..||+|+|+ .+.+| . .| ..+++++..++|||||.++
T Consensus 197 -~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 -CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred -ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 222 369999987 11111 0 11 1567888899999999999
Q ss_pred EEecC
Q 022305 233 VSFSN 237 (299)
Q Consensus 233 i~~~~ 237 (299)
+++..
T Consensus 276 lEiG~ 280 (1082)
T PLN02672 276 FNMGG 280 (1082)
T ss_pred EEECc
Confidence 99764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.1e-07 Score=78.55 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=90.5
Q ss_pred cCCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCC--CCCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL--PFEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~l--pf~~~~FD~Vi 203 (299)
...+|||.+.|-|...+.....++ .|+-++-+++.|+.|.-+ ++.+.+|. .++ .|+|.+||+|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~---~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA---YEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH---HHHHhcCCccccceEe
Confidence 457899999988876665555677 999999999999877653 68888998 444 48899999998
Q ss_pred ec---ccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 204 NV---VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 204 s~---~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
-- +++------+++.+|++|+|||||.++==+.++... +.+.+-..-+.+.+ +.+||+.++...
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d~~~gVa~RL-r~vGF~~v~~~~--- 277 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLDLPKGVAERL-RRVGFEVVKKVR--- 277 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCChhHHHHHHH-HhcCceeeeeeh---
Confidence 21 111100023678899999999999876545544311 11111112233334 559999776532
Q ss_pred CCCCCCCeEEEEEEec
Q 022305 281 NPGRSDPMYVVYSRKA 296 (299)
Q Consensus 281 ~~~~~~p~~~v~arK~ 296 (299)
..+.|+|.|+
T Consensus 278 ------~~~gv~A~k~ 287 (287)
T COG2521 278 ------EALGVVAVKP 287 (287)
T ss_pred ------hccceEEecC
Confidence 3455677664
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-07 Score=81.45 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=83.7
Q ss_pred CceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcC------------------------------------CC-Cc
Q 022305 139 SEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNP------------------------------------VL-TE 180 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~------------------------------------~~-~~ 180 (299)
.++||+|||+-.-... ......+|+..|.++.-++.-+ +. -.
T Consensus 58 ~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~ 137 (256)
T PF01234_consen 58 ETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQ 137 (256)
T ss_dssp EEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEE
T ss_pred CEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhce
Confidence 4789999998543222 2222357999999987654110 00 23
Q ss_pred EEEeccCCCCCCCCCC-----CCeeEEEeccccccc-CCH---HHHHHHHHhhccCCcEEEEEec-CcchHHHHHHhhhh
Q 022305 181 YVVQDLNLNPKLPFED-----NSFDVITNVVSVDYL-TKP---IEVFKEMCQVLKPGGLAIVSFS-NRCFWTKAISIWTS 250 (299)
Q Consensus 181 ~~~~D~~~~~~lpf~~-----~~FD~Vis~~~l~~~-~d~---~~~l~ei~rvLkpGG~lii~~~-~~~~~~~~~~~~~~ 250 (299)
++.+|+... -|+.. .+||+|++.++++.. +|+ .++++++.++|||||+||+... +... ..
T Consensus 138 Vv~cDV~~~--~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQP--NPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------YM 207 (256)
T ss_dssp EEE--TTSS--STTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------EE
T ss_pred EEEeeccCC--CCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------EE
Confidence 677898422 23332 359999999999987 354 5789999999999998887532 2211 11
Q ss_pred cCCC------chhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 251 TGDA------DHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 251 ~~~~------~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
.++. -...++.+-+ +++||.+.+... ......-+-++.++|||
T Consensus 208 vG~~~F~~l~l~ee~v~~al-~~aG~~i~~~~~-~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREAL-EEAGFDIEDLEK-QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ETTEEEE---B-HHHHHHHH-HHTTEEEEEEEG--TTTB---EEEEEEEEE
T ss_pred ECCEecccccCCHHHHHHHH-HHcCCEEEeccc-ccCcCCCCcEEEEEEeC
Confidence 1111 1112333334 569998777763 22333456789999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.4e-07 Score=82.51 Aligned_cols=95 Identities=7% Similarity=-0.002 Sum_probs=65.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCC-CCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF-EDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf-~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|...+....++.+|+|+|+|+.|++.|++ +++++.+|+ ..+.. .+++||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~---~~~~~~~~~~~D~Vv~dPP- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS---TQFATAQGEVPDLVLVNPP- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH---HHHHHhcCCCCeEEEECCC-
Confidence 4689999999998555555567899999999999987654 267999998 55432 3457999998721
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.- ...+.+.++...++|++.++++....
T Consensus 250 -r~-G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 250 -RR-GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred -CC-CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 11 12223333344478888888875543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.5e-07 Score=86.83 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCC-C-C--CCCCeeEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL-P-F--EDNSFDVI 202 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~l-p-f--~~~~FD~V 202 (299)
..+|||+|||+|...+.....+ .+|+++|+|+.+++.++++ ++++.+|+ ... . + ..++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~---~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV---FKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH---HHHHHHHHhcCCCCCEE
Confidence 4689999999997544433333 5899999999999876542 46788887 332 1 1 35689999
Q ss_pred Eecccc---------cccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 203 TNVVSV---------DYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 203 is~~~l---------~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++.-=. ....+...+++...++|||||.++..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 977210 00113445566788999999987753
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-06 Score=84.31 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCC-CCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNL-NPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~-~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|...+.......+|+|+|+|+.|++.|++ +++++.+|+.. ...+++.+++||+|+..--
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP- 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP- 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC-
Confidence 3689999999998655554445789999999999987765 37789999721 0112344568999986421
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...-...+++.+.+ ++|++.++++..
T Consensus 372 -r~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 372 -RKGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred -CCCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 11113566666554 899998888643
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.7e-06 Score=70.89 Aligned_cols=90 Identities=19% Similarity=0.349 Sum_probs=69.1
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCC---CCCCeeEEEecccccccCCHH
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf---~~~~FD~Vis~~~l~~~~d~~ 215 (299)
-++|||||=+....+.. ..--+|+.||+++. .-...++|+ .+.|. +++.||+|.++.+|.+++++.
T Consensus 53 lrlLEVGals~~N~~s~-~~~fdvt~IDLns~-------~~~I~qqDF---m~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST-SGWFDVTRIDLNSQ-------HPGILQQDF---MERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccc-cCceeeEEeecCCC-------CCCceeecc---ccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 48999998533222221 22346999999882 255778888 66665 467999999999999999885
Q ss_pred ---HHHHHHHhhccCCcE-----EEEEecCcc
Q 022305 216 ---EVFKEMCQVLKPGGL-----AIVSFSNRC 239 (299)
Q Consensus 216 ---~~l~ei~rvLkpGG~-----lii~~~~~~ 239 (299)
++++.+.+.|+|+|. +++..|.++
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 689999999999999 888888765
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-06 Score=68.79 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=59.6
Q ss_pred cccHHHHHHhhhcC-----CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCC
Q 022305 125 HIDDPAIAALTKYY-----SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPK 191 (299)
Q Consensus 125 ~l~~~~~~~l~~~~-----~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~ 191 (299)
|++..++.-+.+.+ .+++|+|||+|...+...++. ..|+|+||.|++|+.++++ +++.++|+ ..
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi---ld 107 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI---LD 107 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec---cc
Confidence 34444444443332 579999999997665555544 6799999999999988775 78899999 77
Q ss_pred CCCCCCCeeEEEecc
Q 022305 192 LPFEDNSFDVITNVV 206 (299)
Q Consensus 192 lpf~~~~FD~Vis~~ 206 (299)
+.+..+.||.++.+-
T Consensus 108 le~~~g~fDtaviNp 122 (185)
T KOG3420|consen 108 LELKGGIFDTAVINP 122 (185)
T ss_pred hhccCCeEeeEEecC
Confidence 777789999998774
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.1e-06 Score=74.61 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=65.0
Q ss_pred CceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 139 SEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.++||+|||+|...+. ......+|+++|+++.+++.++++ ++++.+|+. ..++...++||+|++.==
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~--~~l~~~~~~fDlV~~DPP-- 130 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL--SFLAQPGTPHNVVFVDPP-- 130 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH--HHHhhcCCCceEEEECCC--
Confidence 5899999999975542 233346999999999998866542 667888872 223323457999998732
Q ss_pred ccCC-HHHHHHHHHh--hccCCcEEEEEecCc
Q 022305 210 YLTK-PIEVFKEMCQ--VLKPGGLAIVSFSNR 238 (299)
Q Consensus 210 ~~~d-~~~~l~ei~r--vLkpGG~lii~~~~~ 238 (299)
|... ...+++.+.. +|+|+|.++++....
T Consensus 131 y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 2222 3345555544 479999999986653
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.8e-07 Score=72.54 Aligned_cols=57 Identities=28% Similarity=0.352 Sum_probs=49.4
Q ss_pred CCCCCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 190 PKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 190 ~~lpf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
...+|.+++.|+|.+.++++|+. ....++++++|+|||||++-+.+|...+....+.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~ 97 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQ 97 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHh
Confidence 56789999999999999999995 5668999999999999999999998766655543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-06 Score=78.89 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=69.2
Q ss_pred cCCceeeccCcCCccccCC--CC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-C----CCCCe
Q 022305 137 YYSEVFPPSNTPGVSHFPP--GY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-F----EDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~--~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f----~~~~F 199 (299)
...+|||+|+++|.+.+.. .. ++.+++.+|.++++.+.|++ +++++.+|+. +.|+ + .+++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~--e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA--ESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcccCCCC
Confidence 3578999999999755533 22 35689999999999987765 3778888873 2232 1 24689
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-.- -.+...+++.+.+.|+|||.++++
T Consensus 196 D~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99997642 235678899999999999999986
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.8e-06 Score=75.25 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=76.7
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC---CCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL---PFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l---pf~~~~FD~Vis~ 205 (299)
..+||||||.|. ..++...|...++|||+....+..+-+ ++.+++.|+ ..+ -+++++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA---~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA---VEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHhcCCCCCeeEEEEE
Confidence 368999999997 555677788999999999887765432 466777787 333 2456699999988
Q ss_pred ccccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHHH
Q 022305 206 VSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 206 ~~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~~ 243 (299)
+-=.|... -..+++.+.++|||||.+.+.+.+......
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 76666532 247999999999999999998776554443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-06 Score=74.76 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=70.1
Q ss_pred cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCCC---------CcEEE-eccCCCCCCC-CCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVV-QDLNLNPKLP-FEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~~---------~~~~~-~D~~~~~~lp-f~~~~FD~V 202 (299)
..++||++|.+.|.+.+ +...+ +.+++.+|+++++.+.|+++ ++.+. +|.- +.+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHhccCCCccEE
Confidence 45789999999997444 44445 67999999999999988774 55566 3541 2222 457899999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.-. .-.+.+++|+.+.+.|+|||.++++
T Consensus 137 FIDa---dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDA---DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeC---ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9653 2235688999999999999999986
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-06 Score=72.91 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCceeeccCcCCcccc-CCCC-CCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCC--C-CCCCCeeE
Q 022305 138 YSEVFPPSNTPGVSHF-PPGY-KQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKL--P-FEDNSFDV 201 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~-~~~~-~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~l--p-f~~~~FD~ 201 (299)
..+||++|||+|...+ .... ...+|+..|.++ .++..+. .+.+...|-. +.. . ...++||+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg--~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG--DELDSDLLEPHSFDV 122 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT--S-HHHHHHS-SSBSE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec--CcccccccccccCCE
Confidence 3689999999997222 2222 568999999998 6653222 2555666652 111 1 34568999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+++.++..-...+.+++-+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999988788899999999999999888877654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.2e-06 Score=78.09 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=65.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l 208 (299)
..++||++||+|...+.....+.+|+|+|+|+.+++.++++ ++++.+|+ .++. -..++||+|+..==
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~vi~DPP- 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS---AKFATAQMSAPELVLVNPP- 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHHHHhcCCCCCEEEECCC-
Confidence 36899999999985555555668999999999999876642 67888888 4322 12246999987621
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.-.-..++++.+. .++|++.++++..
T Consensus 310 -r~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 310 -RRGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred -CCCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 2112245555554 4799999999854
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-06 Score=75.36 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=68.3
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-----CCCCCe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-----f~~~~F 199 (299)
...+||++|+++|.+.+ +... .+++|+.+|++++..+.|++ +++++.+|.. +.++ .+.++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~--~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL--EVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH--HHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH--hhHHHHHhccCCCce
Confidence 45799999999997444 3333 36899999999999987754 3788998872 2222 113589
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-.- -.+...++..+.+.|+|||.++++
T Consensus 123 D~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDAD---KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccc---ccchhhHHHHHhhhccCCeEEEEc
Confidence 99997642 235678889999999999999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.8e-05 Score=71.81 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=92.8
Q ss_pred HHHHhh--hcCCceeeccCcCCcccc--CCCCC--CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCC
Q 022305 130 AIAALT--KYYSEVFPPSNTPGVSHF--PPGYK--QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF 194 (299)
Q Consensus 130 ~~~~l~--~~~~~vLDiGcG~G~~~~--~~~~~--~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf 194 (299)
.+.+|. ...-+||||.||.|.-.+ ....+ ..+|.-.|.|+.-++..++. ++|.++|+....++.-
T Consensus 126 ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~ 205 (311)
T PF12147_consen 126 AIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA 205 (311)
T ss_pred HHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc
Confidence 344453 245689999999996322 12223 26899999999998865541 4899999843334433
Q ss_pred CCCCeeEEEecccccccCC---HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhh-hhcCC-Cchh---hhH--HHHH
Q 022305 195 EDNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW-TSTGD-ADHV---MIV--GAYF 264 (299)
Q Consensus 195 ~~~~FD~Vis~~~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~-~~~~~-~~~~---~~~--~~~~ 264 (299)
-+-..|+++.+..++.++| ....|+.+.+.+.|||++|.+-..+..-.+.+..- .++.+ ...+ +-. .+.+
T Consensus 206 l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~L 285 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQL 285 (311)
T ss_pred cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHH
Confidence 3445799999999999987 35679999999999999998754433333333332 22211 1111 111 1233
Q ss_pred HHhCCCCCCe
Q 022305 265 HYAGGYEPPQ 274 (299)
Q Consensus 265 ~~~aGF~~v~ 274 (299)
-+.+||+.++
T Consensus 286 v~~aGF~K~~ 295 (311)
T PF12147_consen 286 VEAAGFEKID 295 (311)
T ss_pred HHHcCCchhh
Confidence 3779999664
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.1e-06 Score=80.32 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=74.4
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC--CCCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l--pf~~~~FD~Vis~~ 206 (299)
..+||||||.|. ..++...|...++|+|++..-+.++.+ ++.++..|+ ..+ -++++++|.|+.++
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~---~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL---DLILNDLPNNSLDGIYILF 425 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH---HHHHHhcCcccccEEEEEC
Confidence 458999999996 555667788999999999886654322 245566665 322 26789999999887
Q ss_pred cccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 207 SVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 207 ~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
-=.|... -..+++++.++|||||.+.+.+.+.....
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~ 469 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFY 469 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 6666532 25799999999999999988766544333
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=75.16 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=66.7
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+||.+|+|.|... +....+..+++.||+++++++.+++ +++++.+|.. .-+...+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH--HHHhhCCCCccEE
Confidence 3568999999988522 2222235789999999999997764 2566777762 2233446789999
Q ss_pred Eeccccccc-CC------HHHHHH-HHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYL-TK------PIEVFK-EMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~-~d------~~~~l~-ei~rvLkpGG~lii~~~ 236 (299)
++-.. ... .. -.++++ .+.+.|+|||.+++...
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 97632 111 01 246787 89999999999887643
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=72.23 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=67.7
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHh-------cCC----------------------------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKR-------NPV---------------------------------- 177 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~-------a~~---------------------------------- 177 (299)
.+||-+|||.|...+..+..+..+.|.|.|--|+-. ..+
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~ 137 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPS 137 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcc
Confidence 579999999997666666668899999999999641 000
Q ss_pred -------CCcEEEeccCCCCCCCCCC---CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 178 -------LTEYVVQDLNLNPKLPFED---NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 178 -------~~~~~~~D~~~~~~lpf~~---~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
+.....+|+ ..+..++ ++||+|++.+-+.-.++..++|+.|.++|||||+.|
T Consensus 138 ~~~~~~~~~sm~aGDF---~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 138 SELPSPSNLSMCAGDF---LEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cccCCCCceeEecCcc---EEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 022344454 3333333 799999999888888899999999999999999543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-06 Score=72.49 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=70.7
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHH
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 217 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~ 217 (299)
.++||+|.|.|......+..-.+|++.++|..|..+-+++ .+++. .+ +..-.+-+||+|.|.+.|.-..+|-+.
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~-~~----ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLT-EI----EWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceee-eh----hhhhcCceeehHHHHHHHHhhcChHHH
Confidence 5899999999976665554457899999999999987763 22222 11 122234569999999999999999999
Q ss_pred HHHHHhhccC-CcEEEEE
Q 022305 218 FKEMCQVLKP-GGLAIVS 234 (299)
Q Consensus 218 l~ei~rvLkp-GG~lii~ 234 (299)
|+.++.+|+| .|.+|+.
T Consensus 189 L~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 189 LEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHhccCCCcEEEE
Confidence 9999999999 8877775
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.9e-06 Score=73.86 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=51.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
....|||+|||+|...........+++|+|+++.|++.+++ +++++.+|+ .+++++ .||.|+++.-.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~---~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA---LKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc---ccCCch--hceEEEEcCCc
Confidence 34689999999997444433345789999999999986654 377899999 777764 48999998543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.7e-06 Score=76.57 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=64.9
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+.|||+|||+|. +.+.......+|++||.|.-+ +.|.+ .++++.+.+ +++.+|.+..|+|+|-+.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv---Edi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV---EDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecce---EEEecCccceeEEeehhhh
Confidence 579999999997 444444445689999988754 44433 277888888 6666667889999987654
Q ss_pred ccc---CCHHHHHHHHHhhccCCcEEE
Q 022305 209 DYL---TKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 209 ~~~---~d~~~~l~ei~rvLkpGG~li 232 (299)
.++ .-+..+|-.=-+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 443 234556666678999999774
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.1e-06 Score=72.87 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=67.5
Q ss_pred hcCCceeeccCcCCcccc--C-CCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCC---CCCee
Q 022305 136 KYYSEVFPPSNTPGVSHF--P-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE---DNSFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~--~-~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~---~~~FD 200 (299)
+...+||+.|.|+|.... + ...+.++|+..|+.++..+.|+++ +++.+.|+ .+-.|. ++.||
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv---~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV---CEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G---GCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce---ecccccccccCccc
Confidence 456899999999996222 2 123678999999999999988763 67888998 333332 36799
Q ss_pred EEEecccccccCCHHHHHHHHHhhc-cCCcEEEEEecC
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVL-KPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvL-kpGG~lii~~~~ 237 (299)
.|+.- +++|..++..+.++| ||||.+++=.|+
T Consensus 116 avfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 116 AVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp EEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred EEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 98754 689999999999999 899988776554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=9e-06 Score=74.09 Aligned_cols=67 Identities=7% Similarity=-0.035 Sum_probs=49.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...........+|+|+|+++.|++.+++ +++++++|+ .++++++-.+|.|+++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA---LKVDLSELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh---hcCCHHHcCcceEEEeC
Confidence 34689999999997443333334599999999999997654 477899999 77776543358888874
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-05 Score=76.22 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=66.5
Q ss_pred CceeeccCcCCccccCCC--CCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVSHFPPG--YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~--~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
.+|||++||+|...+... ....+|+++|+++.+++.++++ +++...|+ ..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da---~~~l~~~~~fD~V~lDP-- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA---NALLHEERKFDVVDIDP-- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH---HHHHhhcCCCCEEEECC--
Confidence 479999999998555432 2235899999999999877653 34777887 33221146799999853
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...+..++....+.+++||.+.++..
T Consensus 134 --~Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 --FGSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred --CCCcHHHHHHHHHHhcCCCEEEEEec
Confidence 14567888887888999999999843
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.1e-06 Score=71.06 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=62.2
Q ss_pred cCCceeeccCcCCccccCC-----CCC------CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPP-----GYK------QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-----~~~------~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~ 196 (299)
....+||+-||+|+..+.. ... ..+++|.|+++++++.++++ +.+...|+ .++++.+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~---~~l~~~~ 104 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA---RELPLPD 104 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G---GGGGGTT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch---hhccccc
Confidence 3457999999999833211 111 12489999999999877653 67888999 8889888
Q ss_pred CCeeEEEecccccc-cC---C----HHHHHHHHHhhccCCcEEEEEecCc
Q 022305 197 NSFDVITNVVSVDY-LT---K----PIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 197 ~~FD~Vis~~~l~~-~~---d----~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+++|+|+++-=.-- +. + ..++++++.|+|++ ..+++...+.
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 89999998721111 11 1 14678999999999 4444443433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.2e-06 Score=69.20 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=48.2
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
..|+|+|||+|...+...+.+ .+|+|+|+.+++++.++++ ++|+++|+ ..+ ...||.|+++
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv---~~~---~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV---SDF---RGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch---hhc---CCccceEEEC
Confidence 359999999998555544444 7999999999999987764 78899998 554 3568888876
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=61.82 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=69.9
Q ss_pred CCceeeccCcCCc-ccc--CCCCCCCeEEEEeCCHHHHHh-------cCCCCcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 138 YSEVFPPSNTPGV-SHF--PPGYKQDRIVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~-~~~--~~~~~~~~v~gvD~S~~ml~~-------a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
..-++++|||+|. ..+ ....++....++|+|+.+++. ++.+++.+..|+. -....++.|+++-+=
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~----~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL----SGLRNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH----hhhccCCccEEEECCC
Confidence 3458999999996 222 222266789999999999885 3335778888873 223448899888551
Q ss_pred -cc--------c-----cc--CC----HHHHHHHHHhhccCCcEEEEEecCcchHHHHHH
Q 022305 207 -SV--------D-----YL--TK----PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 246 (299)
Q Consensus 207 -~l--------~-----~~--~d----~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~ 246 (299)
+. + |. .| ..+++.++-.+|.|.|.+++-....+...+.+.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k 179 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILK 179 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHH
Confidence 11 1 11 11 346777788889999999887666665555443
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.2e-05 Score=67.87 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=70.8
Q ss_pred ccHHHHHHh---hhcCCceeeccCcCCc--cccC--CCCCCCeEEEEeCCHHHHHhcCCC------------------Cc
Q 022305 126 IDDPAIAAL---TKYYSEVFPPSNTPGV--SHFP--PGYKQDRIVGMGMNEEELKRNPVL------------------TE 180 (299)
Q Consensus 126 l~~~~~~~l---~~~~~~vLDiGcG~G~--~~~~--~~~~~~~v~gvD~S~~ml~~a~~~------------------~~ 180 (299)
+...+++.| .....+.||+|+|+|. ..+. ...++...+|||.-++.++.++++ ..
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 334445555 3456789999999995 1111 122345669999999998866543 45
Q ss_pred EEEeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 181 YVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 181 ~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++++|. ...--+.++||.|.+... ..+..+++...|||||.++|-..
T Consensus 148 ivvGDg---r~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 148 IVVGDG---RKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEeCCc---cccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 778888 666667789999999843 34455778889999998888543
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=70.00 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=54.4
Q ss_pred CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHh-cCCCCc---EEEeccCC--CCCCCCCCCCeeEEEeccccccc
Q 022305 139 SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTE---YVVQDLNL--NPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~-a~~~~~---~~~~D~~~--~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..+||+|||+|......... ..+|+|+|++++|+.. .++... +...|+.. .+.++.+-..+|+++++.++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~--- 153 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS--- 153 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh---
Confidence 46999999999743333223 4689999999988874 333322 33334410 01122222367877766543
Q ss_pred CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 212 TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 212 ~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.|..+.+.|+| |.+++-+
T Consensus 154 -----~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 154 -----ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred -----HHHHHHHHhCc-CeEEEEc
Confidence 47889999999 8666544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.1e-05 Score=68.42 Aligned_cols=160 Identities=17% Similarity=0.179 Sum_probs=84.3
Q ss_pred cCCceeeccCc---CCccccC--CCCCCCeEEEEeCCHHHHHhcCC------C--CcEEEeccCCCCCC---CCCCCCee
Q 022305 137 YYSEVFPPSNT---PGVSHFP--PGYKQDRIVGMGMNEEELKRNPV------L--TEYVVQDLNLNPKL---PFEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG---~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~------~--~~~~~~D~~~~~~l---pf~~~~FD 200 (299)
-+...||+||| .|..|-. ...+.++|+.+|..|-.+..++. . ..++.+|+...+.+ |--.+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 35689999999 3332221 22478999999999988886654 2 67899998321111 00112333
Q ss_pred -----EEEecccccccC---CHHHHHHHHHhhccCCcEEEEEecCcch----HHHHHHhhhhcCCCchhhhHHHHHHHhC
Q 022305 201 -----VITNVVSVDYLT---KPIEVFKEMCQVLKPGGLAIVSFSNRCF----WTKAISIWTSTGDADHVMIVGAYFHYAG 268 (299)
Q Consensus 201 -----~Vis~~~l~~~~---d~~~~l~ei~rvLkpGG~lii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a 268 (299)
.|+...+|||++ ++..+++.+...|-||.+++|+...... .......+.......+.+-..+.-..-.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~ 227 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD 227 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC
Confidence 577788899995 5889999999999999999998654322 2333445555555555554444444446
Q ss_pred CCCCCe--eeecC---CCCC-------CCCCeEEEEEEec
Q 022305 269 GYEPPQ--AVDIS---PNPG-------RSDPMYVVYSRKA 296 (299)
Q Consensus 269 GF~~v~--~~~~~---~~~~-------~~~p~~~v~arK~ 296 (299)
||+.++ ++.++ |... ..-.+|.-+||||
T Consensus 228 g~elvePGlv~~~~WrP~~~~~~~~~~~~~~~~~gVarKp 267 (267)
T PF04672_consen 228 GLELVEPGLVPVPRWRPDGPEPDPPDPARVWMYGGVARKP 267 (267)
T ss_dssp TSEE-TT-SEEGGGSS-STTTTTT--GGGGSEEEEEEE--
T ss_pred CCccCCCceecccccCCCCCCcCCCCccceEEEEEEEeCC
Confidence 787643 33332 1111 1235699999996
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=71.85 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=66.8
Q ss_pred hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vi 203 (299)
+...+|||+++|+|. .+++..+. .+.|+++|+++.-++..+++ +.....|. ..+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~---~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG---RVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch---hhhhhhchhhcCeEE
Confidence 355789999999996 44444332 36899999999887755442 44555666 4442 2346799999
Q ss_pred ----ecccccccCCH------------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 204 ----NVVSVDYLTKP------------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 ----s~~~l~~~~d~------------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+..-..-.+| .++|.+..+.|||||.++-++-.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 55322211222 46888999999999998887654
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.4e-05 Score=71.83 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=70.9
Q ss_pred HHHHhhh--cCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCC-
Q 022305 130 AIAALTK--YYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF- 194 (299)
Q Consensus 130 ~~~~l~~--~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf- 194 (299)
++..+.+ ...+||++|+++|.+.+. ... ++++++.+|++++..+.|++ +++++.+|.. +.++-
T Consensus 70 lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~--e~L~~l 147 (247)
T PLN02589 70 FLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL--PVLDQM 147 (247)
T ss_pred HHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--HHHHHH
Confidence 3444433 356899999999975442 222 46799999999999887654 3788888873 23331
Q ss_pred -----CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 195 -----EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 195 -----~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..++||+|+.-.- -.+...+++.+.+.|+|||.++++
T Consensus 148 ~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 1368999997632 234567888889999999999886
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.7e-05 Score=75.47 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCC---CCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP---FEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lp---f~~~~FD~Vi 203 (299)
.++||++=|=+|...+.....++ +||+||+|...|+.|+++ .+|+++|+- +-+. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf--~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF--KWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH--HHHHHHHhcCCcccEEE
Confidence 57899999989987777777777 999999999999988764 578999972 2222 2335899999
Q ss_pred ec---------ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NV---------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~---------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.- ....-..|..+.+..+.++|+|||.+++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 32 11222346778999999999999998887544
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.7e-05 Score=75.69 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=58.3
Q ss_pred CceeeccCcCCcccc-CC-----CCCCCeEEEEeCCHHHHHhc---------CCCCcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 139 SEVFPPSNTPGVSHF-PP-----GYKQDRIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~-~~-----~~~~~~v~gvD~S~~ml~~a---------~~~~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
..|+|+|||+|.... .. .....+|++|+-|+.+.... ..+++++.+|+ +++..+. .+|+||
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~---r~v~lpe-kvDIIV 263 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM---REVELPE-KVDIIV 263 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T---TTSCHSS--EEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc---cCCCCCC-ceeEEE
Confidence 459999999996211 11 11236999999998765321 12489999999 7877654 799999
Q ss_pred eccccccc--CCHHHHHHHHHhhccCCcEEE
Q 022305 204 NVVSVDYL--TKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 204 s~~~l~~~--~d~~~~l~ei~rvLkpGG~li 232 (299)
|=..-... +-..+.|....|.|||||.+|
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 85432222 234678999999999999664
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.8e-05 Score=66.97 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=66.3
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCC-Cee
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDN-SFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~-~FD 200 (299)
....+||=+|.|.|. ..+....+..+++.||+++.+++.+++ +++++.+|.. .-+.-..+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccCCccc
Confidence 356899999998875 333333335799999999999997654 3567888862 11222234 899
Q ss_pred EEEecccccccCC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+.-..-...+. -.++++.+.+.|+|||.+++...+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 9997543222222 268999999999999999987643
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00021 Score=66.43 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=64.6
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh-cCCC---CcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR-NPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~-a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
....+|+|.|.|. ..+...++ ++-|+++....+.. ++.. ++.+.+|+- .+.|- -|+|++-++|||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmf--q~~P~----~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMF--QDTPK----GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhcCCcceeccccc--ccCCC----cCeEEEEeecccC
Confidence 4568999999886 44444443 47777777666543 3333 688888873 23443 2599999999999
Q ss_pred CC--HHHHHHHHHhhccCCcEEEEE
Q 022305 212 TK--PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 212 ~d--~~~~l~ei~rvLkpGG~lii~ 234 (299)
.| ..++|++++..|+|||.+++-
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 74 579999999999999977764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.52 E-value=7e-05 Score=64.33 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=64.7
Q ss_pred ceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 140 EVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 140 ~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
+++|+|+|.|.-- ++..+|..+++.+|.+..-...-+ .+++++...+ ++ +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA---EE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H---HH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee---cc-cccCCCccEEEeehh--
Confidence 7999999999622 234457789999999986654322 2477888888 55 556788999999864
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..+...++-+.+.||+||.+++-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEE
Confidence 46788899999999999988774
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00035 Score=65.04 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=69.1
Q ss_pred CceeeccCcCCcc------ccCCCCCCCeEEEEeCCHHHHHhcCCC--------Cc--EEEeccCCCCC-CCC--CCCCe
Q 022305 139 SEVFPPSNTPGVS------HFPPGYKQDRIVGMGMNEEELKRNPVL--------TE--YVVQDLNLNPK-LPF--EDNSF 199 (299)
Q Consensus 139 ~~vLDiGcG~G~~------~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~--~~~~D~~~~~~-lpf--~~~~F 199 (299)
..++|+|||.|.- .+........++++|+|.++|+.+.+. ++ -+++|...... ++- ..+..
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 4799999999962 232222357899999999999865432 22 36676631111 221 12345
Q ss_pred eEEEec-ccccccCCH--HHHHHHHHh-hccCCcEEEEEecCcchHHHH
Q 022305 200 DVITNV-VSVDYLTKP--IEVFKEMCQ-VLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 200 D~Vis~-~~l~~~~d~--~~~l~ei~r-vLkpGG~lii~~~~~~~~~~~ 244 (299)
.+++.. .++.+++.. ..+|+++.+ .|+|||.++|.+-........
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l 206 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKV 206 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence 666654 578888644 478999999 999999999987544333333
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=66.07 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=48.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCee---EEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFD---VITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD---~Vis~~~ 207 (299)
...+|||+|||+|............++++|+++.|++.+++ +++++.+|+ ..++++ .|| +|+++.-
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~---~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA---LKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch---hcCChh--HcCCcceEEEcCC
Confidence 34689999999997443333334679999999999987654 367888898 777764 466 7777654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.9e-05 Score=63.65 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=60.5
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCC-C-C-CCC-CeeEEEe
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL-P-F-EDN-SFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~l-p-f-~~~-~FD~Vis 204 (299)
.++||++||+|...+.....+ ..|+++|.++.+++.++++ ++++.+|+ ... . + ..+ .||+|+.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~---~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA---LRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH---HHHHHHhhccCCCceEEEE
Confidence 579999999997544443334 4899999999998765542 56777887 221 1 1 122 4787776
Q ss_pred cccccccCCHHHHHHHH--HhhccCCcEEEEEecC
Q 022305 205 VVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei--~rvLkpGG~lii~~~~ 237 (299)
-=-.. -....+.++.+ ..+|+++|.++++...
T Consensus 128 DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF-NGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 42111 12234444444 3479999999998654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.4e-05 Score=60.36 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=59.3
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCC-CCCeeEEEecccccccCCHH
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTKPI 215 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l~~~~d~~ 215 (299)
.++||+|||.|. -.......+.+|+++|+++..++.+++. ++++++|+ .+-.++ -+.+|+|.+..- -++..
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDl---f~p~~~~y~~a~liysirp---p~el~ 91 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDL---FNPNLEIYKNAKLIYSIRP---PRDLQ 91 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcC---CCCCHHHHhcCCEEEEeCC---CHHHH
Confidence 579999999884 2222233578999999999999988775 78899998 443332 356899988742 23445
Q ss_pred HHHHHHHhhccCCcEEEEE
Q 022305 216 EVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 216 ~~l~ei~rvLkpGG~lii~ 234 (299)
..+.++.+-+. .-++|.
T Consensus 92 ~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 92 PFILELAKKIN--VPLIIK 108 (134)
T ss_pred HHHHHHHHHcC--CCEEEE
Confidence 55555555443 455554
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=6.4e-05 Score=69.98 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEE-eccCC-CCCCCCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVV-QDLNL-NPKLPFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~-~D~~~-~~~lpf~~~~FD~Vi 203 (299)
..++||||||+|. ..+....++.+++|+|+++.+++.|+++ +++.. .|... ...+..+++.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 4689999999884 2333444578999999999999987653 23332 22200 011112467899999
Q ss_pred ecc
Q 022305 204 NVV 206 (299)
Q Consensus 204 s~~ 206 (299)
|+=
T Consensus 195 cNP 197 (321)
T PRK11727 195 CNP 197 (321)
T ss_pred eCC
Confidence 983
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=5.2e-05 Score=69.85 Aligned_cols=65 Identities=15% Similarity=0.078 Sum_probs=48.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....|||+|||.|...........+|+++|+++.|++.+++ +++++.+|+ ...++ ..||.|+++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---l~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---LKTEF--PYFDVCVANV 109 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH---hhhcc--cccCEEEecC
Confidence 34689999999997443333345789999999999986543 377889998 55544 4689998864
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=59.41 Aligned_cols=95 Identities=13% Similarity=0.215 Sum_probs=73.1
Q ss_pred CceeeccCcCCc---cccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCC-----CCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGV---SHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~~ 207 (299)
.-||++|.|+|. ..+....+...++.++.|++....-.+ .++++.+|. ..+. +.+..||.|+|..=
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda---~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDA---FDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccch---hhHHHHHhhcCCCeeeeEEeccc
Confidence 469999999996 444555567899999999998876554 377888887 4442 66788999999987
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEE-EEec
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAI-VSFS 236 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~li-i~~~ 236 (299)
+-.++ .-.+.|+++...|.+||.++ |+..
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 77775 44678999999999999654 5544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0034 Score=54.26 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=95.5
Q ss_pred hccccHHHHHHhh----hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHH----hcCC--CCcEEEeccCCCC
Q 022305 123 VTHIDDPAIAALT----KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELK----RNPV--LTEYVVQDLNLNP 190 (299)
Q Consensus 123 ~~~l~~~~~~~l~----~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~----~a~~--~~~~~~~D~~~~~ 190 (299)
...+...++..|. +.-.+||=+|..+|| +|.........++||++|+.+.. .+++ ++--+..|++..+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~ 137 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPE 137 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcH
Confidence 3445555555553 345789999998887 78877777789999999987754 4444 4556778874322
Q ss_pred CCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--HhC
Q 022305 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAG 268 (299)
Q Consensus 191 ~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a 268 (299)
...+--+..|+|+.--+ --++..-+..++..-||+||.+++.+-.++- ..+. +.-..+.+... +..
T Consensus 138 ~Y~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSI--------dvT~--dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 138 KYRHLVEKVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIAIKARSI--------DVTA--DPEEVFKDEVEKLEEG 205 (231)
T ss_pred HhhhhcccccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEEEEeecc--------cccC--CHHHHHHHHHHHHHhc
Confidence 22223355888876421 0112344678889999999988776543321 1111 11223333222 668
Q ss_pred CCCCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 269 GYEPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 269 GF~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
||++.+..++.| ..+| .+.|++++
T Consensus 206 ~f~i~e~~~LeP--ye~D-H~~i~~~~ 229 (231)
T COG1889 206 GFEILEVVDLEP--YEKD-HALIVAKY 229 (231)
T ss_pred CceeeEEeccCC--cccc-eEEEEEee
Confidence 999999877764 3333 34555544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00045 Score=62.55 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=63.2
Q ss_pred hcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 136 KYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...++||=+|.|-|. ..-..+++ .+|+-|||.+++++.+++. ++++. .+ . .-..++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~---~--~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL---L--DLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh---h--hccCCcCCEE
Confidence 456899999999664 33333434 4999999999999988772 22222 11 1 1123689999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+-.. ....+.+.++|.|+|||.++..-.+
T Consensus 144 IvDs~-----~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 144 ICLQE-----PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred EEcCC-----CChHHHHHHHHhcCCCcEEEECCCC
Confidence 97643 4478889999999999999886443
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0003 Score=54.84 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=46.7
Q ss_pred CeeEEEecccccccC------CHHHHHHHHHhhccCCcEEEEEecCcchHHH-------HHHhhhhcCCCchhhhHHHHH
Q 022305 198 SFDVITNVVSVDYLT------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK-------AISIWTSTGDADHVMIVGAYF 264 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 264 (299)
.||+|+|..+..|+. -+..+|+.+++.|+|||.+|++-.++..+.+ ....+.... -+...+.+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~--lrP~~F~~~L 78 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIK--LRPDQFEDYL 78 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH------GGGHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceE--EChHHHHHHH
Confidence 499999999988772 3568999999999999999998654333221 112222211 0111345566
Q ss_pred HH-hCCCCCCeeeecCCC--CCCCCCeEEE
Q 022305 265 HY-AGGYEPPQAVDISPN--PGRSDPMYVV 291 (299)
Q Consensus 265 ~~-~aGF~~v~~~~~~~~--~~~~~p~~~v 291 (299)
.. .-||..++....... .|...|.++.
T Consensus 79 ~~~evGF~~~e~~~~~~~~~~gF~RpI~lf 108 (110)
T PF06859_consen 79 LEPEVGFSSVEELGVPENSSKGFDRPIYLF 108 (110)
T ss_dssp TSTTT---EEEEE-------------EEEE
T ss_pred HhcccceEEEEEcccCCCCCCCCCCcEEEE
Confidence 54 479999987777543 3555676654
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=60.43 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=65.4
Q ss_pred hcCCceeeccCcCCc--cccCCCCCC--CeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC---CCCCCee
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQ--DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP---FEDNSFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~--~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp---f~~~~FD 200 (299)
+...+|||+++++|. .+++....+ ..|+++|+++.=++..++ ++..+..|. ..++ ...+.||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccccccccCcCc
Confidence 455799999999885 666555543 567999999976654333 245666776 3333 2233699
Q ss_pred EEE----ec--ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VIT----NV--VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vi----s~--~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.|+ |+ .++.--++ -.++|....++|||||.++-++-.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 999 22 23321111 136888999999999999888654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00017 Score=68.41 Aligned_cols=91 Identities=8% Similarity=0.021 Sum_probs=59.8
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCC-CC-CC-------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK-LP-FE------------- 195 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~-lp-f~------------- 195 (299)
.++||++||+|+..+.......+|+|+|+|+.|++.++++ ++++.+|+ .+ ++ +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~---~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA---EEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH---HHHHHHHhhcccccccccccc
Confidence 4799999999985555554456899999999999876653 66888887 33 11 10
Q ss_pred -CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 196 -DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
...||+|+.-== ...-..++++.+. +|++.++++...
T Consensus 285 ~~~~~D~v~lDPP--R~G~~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPP--RAGLDDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCC--CCCCcHHHHHHHH---ccCCEEEEEeCH
Confidence 225899886411 1111244555554 478888888543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0003 Score=64.32 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCC-CCCCCCeeEE
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKL-PFEDNSFDVI 202 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~l-pf~~~~FD~V 202 (299)
..+||-+|.|.|. ..+.......+++.|||++..++.+++. ++.+..|. .+. .-..++||+|
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg---~~~v~~~~~~fDvI 153 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG---VEFLRDCEEKFDVI 153 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH---HHHHHhCCCcCCEE
Confidence 3699999999774 3333343468999999999999987652 46666776 222 2223489999
Q ss_pred EecccccccCCH------HHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++-.+=. . .| ..+++.++|.|+++|.++....+
T Consensus 154 i~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 154 IVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 9765433 2 23 78999999999999999887333
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00027 Score=64.54 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCceeeccCcCCccccCCC--C-CCCeEEEEeCCHHHHHhcCCCCcEE--------EeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPPG--Y-KQDRIVGMGMNEEELKRNPVLTEYV--------VQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~--~-~~~~v~gvD~S~~ml~~a~~~~~~~--------~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|++.++.. + ...+++++|.|+.|++.++...+-. ..+. ..+..++. ..|+|++++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL-YRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh-hcccccCC--CCcEEEEeh
Confidence 3589999999998544321 1 2358999999999999766531100 0111 00112232 239999999
Q ss_pred cccccCC--HHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d--~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|..+++ ...+++.+.+.+.+ .+||..+.
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 9999976 34566667666665 55554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0018 Score=56.88 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=84.2
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHH----HHhcCCC--CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEE----LKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~m----l~~a~~~--~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+||-+|..+|+ +|+.... +.+.|++|++|+.. ++.|+++ +--+..|+...+....--+.+|+|++--+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCC
Confidence 44689999999997 6665433 36899999999955 4555554 44567887322222222357999998743
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--HhCCCCCCeeeecCCCCCCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEPPQAVDISPNPGRS 285 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~aGF~~v~~~~~~~~~~~~ 285 (299)
+-++..-++.++...||+||.+++.+..++ .....+++ ..+..... ++.||++.+...+.|= .
T Consensus 153 --Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~s--------iD~t~~p~--~vf~~e~~~L~~~~~~~~e~i~LePy--~- 217 (229)
T PF01269_consen 153 --QPDQARIAALNARHFLKPGGHLIISIKARS--------IDSTADPE--EVFAEEVKKLKEEGFKPLEQITLEPY--E- 217 (229)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------H-SSSSHH--HHHHHHHHHHHCTTCEEEEEEE-TTT--S-
T ss_pred --ChHHHHHHHHHHHhhccCCcEEEEEEecCc--------ccCcCCHH--HHHHHHHHHHHHcCCChheEeccCCC--C-
Confidence 334455677888899999999998764221 11111111 12222222 5578999998887642 2
Q ss_pred CCeEEEEEEe
Q 022305 286 DPMYVVYSRK 295 (299)
Q Consensus 286 ~p~~~v~arK 295 (299)
.-..+|+++.
T Consensus 218 ~dH~~vv~~y 227 (229)
T PF01269_consen 218 RDHAMVVGRY 227 (229)
T ss_dssp TTEEEEEEEE
T ss_pred CCcEEEEEEe
Confidence 2345555543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00052 Score=66.33 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=69.6
Q ss_pred ceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 140 EVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 140 ~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
++|-+|||.-..+. ........|+.+|+|+..++.... ...+...|+ ..+.|++++||+|+--.+++++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~---~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM---DQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc---hhccCCCcceeEEEecCccccc
Confidence 89999998543222 222234689999999987764322 277889999 8999999999999999999887
Q ss_pred C-C---------HHHHHHHHHhhccCCcEE-EEEe
Q 022305 212 T-K---------PIEVFKEMCQVLKPGGLA-IVSF 235 (299)
Q Consensus 212 ~-d---------~~~~l~ei~rvLkpGG~l-ii~~ 235 (299)
- | ....+.++.|+|+|||.+ .++.
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 1 235678999999999954 4554
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00022 Score=67.49 Aligned_cols=90 Identities=7% Similarity=0.020 Sum_probs=58.0
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCC-C-------C---C----
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL-P-------F---E---- 195 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~l-p-------f---~---- 195 (299)
.++||++||+|+..+.......+|+|+|+|++|++.++++ ++++.+|+ .++ + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA---EEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH---HHHHHHHhhcccccccccccc
Confidence 4799999999985555544446899999999999977653 56888887 332 1 1 0
Q ss_pred -CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 -DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...||+|+.-== .-.-..++++.+. +|++.++++..
T Consensus 276 ~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 123788775310 1111234445443 47889999854
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00032 Score=72.14 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=49.0
Q ss_pred eEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCC--CCCeeEEEeccccccc------CCHHHHHHH---
Q 022305 161 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE--DNSFDVITNVVSVDYL------TKPIEVFKE--- 220 (299)
Q Consensus 161 ~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~--~~~FD~Vis~~~l~~~------~d~~~~l~e--- 220 (299)
+++|+|+++.|++.|+.+ +++.++|+ .+++.+ .++||+|+++= .|. .+.....++
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~---~~~~~~~~~~~~d~IvtNP--PYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV---ADLKNPLPKGPTGLVISNP--PYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh---hhcccccccCCCCEEEECC--CCcCccCchHHHHHHHHHHHH
Confidence 699999999999987663 57888898 666543 45899999982 221 123334344
Q ss_pred HHhhccCCcEEEEEecCc
Q 022305 221 MCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 221 i~rvLkpGG~lii~~~~~ 238 (299)
..+...+|+.+++-.++.
T Consensus 333 ~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 333 RLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHhCCCCeEEEEeCCH
Confidence 344444888777765553
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00019 Score=66.24 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=60.4
Q ss_pred CceeeccCcCCcc-ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGVS-HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~-~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
+-|||+|||+|.. .++..-...+|++|+-|+ |.+.|++ ++.++.+.+ +++.++ ++.|+||+--.-
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKi---EdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKI---EDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcc---ccccCc-hhccEEEeccch
Confidence 3589999999984 444443446899999875 6666554 267777888 777775 459999975321
Q ss_pred ccc--CCHHHHHHHHHhhccCCcEEEEEe
Q 022305 209 DYL--TKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 209 ~~~--~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.-+ +...+..--..|.|||.|.++=++
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 111 222233334569999999876543
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00018 Score=62.64 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=58.3
Q ss_pred cCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
....|+|+-||-|...++.+. +...|+++|++|..++..++ .+..+.+|. ..+.. .+.||.|++.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~---~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA---REFLP-EGKFDRVIMN 176 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G---GG----TT-EEEEEE-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH---HHhcC-ccccCEEEEC
Confidence 456899999999976665544 56789999999999875433 267788998 55544 7889999987
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.- ..-..+|..+.+++|+||.+-
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence 42 233467788999999999764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=56.25 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=83.7
Q ss_pred CCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHH---hcC-----CCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELK---RNP-----VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~---~a~-----~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+++|+|+|.|.--++ ...+..+++-+|....=+. .+. .+++++++.+ +++.-....||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra---E~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA---EEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH---hhcccccccCcEEEeehc
Confidence 47999999999974443 4557788999998865433 222 2478888888 666532222999999864
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 287 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p 287 (299)
.+....+.-+...+|+||.+++-.. ... .+...-..... ...||....+.....+. ...+
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~------------~~~--~~e~~e~~~a~-~~~~~~~~~~~~~~~p~-~~~~ 204 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKG------------LAG--KDELPEAEKAI-LPLGGQVEKVFSLTVPE-LDGE 204 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhH------------Hhh--hhhHHHHHHHH-HhhcCcEEEEEEeecCC-CCCc
Confidence 4667777888999999997754100 000 01111111111 33667777776665443 3446
Q ss_pred eEEEEEEec
Q 022305 288 MYVVYSRKA 296 (299)
Q Consensus 288 ~~~v~arK~ 296 (299)
..+++.+|.
T Consensus 205 r~l~ii~~~ 213 (215)
T COG0357 205 RHLVIIRKR 213 (215)
T ss_pred eEEEEEecc
Confidence 667776664
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00039 Score=69.16 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred ccCcchhhccccHHHHHHhhh----cCCceeeccCcCCccccCC--------C--CCCCeEEEEeCCHHHHHhcCCC---
Q 022305 116 FYETPRFVTHIDDPAIAALTK----YYSEVFPPSNTPGVSHFPP--------G--YKQDRIVGMGMNEEELKRNPVL--- 178 (299)
Q Consensus 116 ~y~~~~~~~~l~~~~~~~l~~----~~~~vLDiGcG~G~~~~~~--------~--~~~~~v~gvD~S~~ml~~a~~~--- 178 (299)
||..+.++..+.+.+...... ...+|||++||+|...... . ....+++|+|+++..++.++.+
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 566666655554433222111 2358999999999722211 0 0135799999999999876543
Q ss_pred -----CcEEEeccCCCCC--CCCCCCCeeEEEec
Q 022305 179 -----TEYVVQDLNLNPK--LPFEDNSFDVITNV 205 (299)
Q Consensus 179 -----~~~~~~D~~~~~~--lpf~~~~FD~Vis~ 205 (299)
.+....|...... ..-..+.||+|+++
T Consensus 86 ~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 86 FALLEINVINFNSLSYVLLNIESYLDLFDIVITN 119 (524)
T ss_pred cCCCCceeeecccccccccccccccCcccEEEeC
Confidence 2233333210000 01112579999977
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00013 Score=62.13 Aligned_cols=95 Identities=15% Similarity=0.240 Sum_probs=50.8
Q ss_pred CceeeccCcCCc--cccCCC-CCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCC---CCC----CCCCCCeeEEEecccc
Q 022305 139 SEVFPPSNTPGV--SHFPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN---PKL----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~-~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~---~~l----pf~~~~FD~Vis~~~l 208 (299)
..+||+||++|. ..+... .+..+|+|+|+.+.- -.+.+.++.+|+... ..+ +-..+.||+|+|-.+.
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~ 101 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAP 101 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE----
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEeccccc---cccceeeeecccchhhHHHhhhhhccccccCcceecccccc
Confidence 579999999996 222222 235899999999861 112233333333110 111 1122689999987633
Q ss_pred cccC----C-------HHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLT----K-------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~----d-------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.... | ....+.-+...|||||.+++-+-
T Consensus 102 ~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 102 NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ---SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 3222 1 12344555678999998888654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00044 Score=65.78 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=65.3
Q ss_pred CceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
.++||+-||+|...+.... ...+|+++|+|+..++..+++ ++++..|++ .-+....+.||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~--~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA--NVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH--HHHHHhCCCCCEEEeCC-
Confidence 3799999999985544332 226899999999999866543 456777772 11222246799998743
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+..++..+.+.+++||++.++
T Consensus 123 ---fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 ---FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---CCCcHHHHHHHHHhcccCCEEEEE
Confidence 246678999999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00059 Score=63.10 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=59.9
Q ss_pred CCceeeccCcCCccccCCC---------CCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCC-CC-C
Q 022305 138 YSEVFPPSNTPGVSHFPPG---------YKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP-FE-D 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~---------~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lp-f~-~ 196 (299)
..+|+|+.||+|....... ....+++|+|+++.+...++-+ .....+|. -..+ +. .
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~---l~~~~~~~~ 123 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS---LENDKFIKN 123 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T---TTSHSCTST
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc---ccccccccc
Confidence 3479999999997332211 2467899999999998765421 34666675 2222 22 5
Q ss_pred CCeeEEEec--cccc-c----c-CC-------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 197 NSFDVITNV--VSVD-Y----L-TK-------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 197 ~~FD~Vis~--~~l~-~----~-~d-------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+.||+|+++ +... + . .+ ...++..+.+.||+||.+.+.+|+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 789999986 2222 1 0 00 124788899999999998887774
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=57.82 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=72.0
Q ss_pred HHHHHHhhhcCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCC-CCCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL-PFEDNS 198 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~l-pf~~~~ 198 (299)
....+.+.....+||.+|-|-|. ..+....+..+=+-|+.+++.+++-+. ++....+--. .-+ .++|+.
T Consensus 92 ha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We--Dvl~~L~d~~ 169 (271)
T KOG1709|consen 92 HALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE--DVLNTLPDKH 169 (271)
T ss_pred HHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH--hhhccccccC
Confidence 33344444556899999999886 444444455666778999999887654 2333333220 112 256889
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
||-|+---.-++.+|...+.+.+.|+|||+|.+-+
T Consensus 170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 99998765557888999999999999999997643
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00092 Score=58.75 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=65.8
Q ss_pred CceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-----CCCCCeeE
Q 022305 139 SEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSFDV 201 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-----f~~~~FD~ 201 (299)
++.||+|.=+|.+.+. ... .+++|+++|++++..+.+.+ ++++++++.. +.|+ .+.++||.
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~--esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL--ESLDELLADGESGTFDF 152 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh--hhHHHHHhcCCCCceeE
Confidence 6899999767764443 222 36899999999988876543 4788888763 2332 35789999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++.-. +-.+-...+.++.++||+||.++++
T Consensus 153 aFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 98542 2234457889999999999999886
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00019 Score=65.74 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCC-CC--CCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPK-LP--FEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~-lp--f~~~~FD~Vi 203 (299)
..+|||+=|=+|...+.....+ .+|++||.|..+++.++++ ++++..|+ .+ +. -..++||+||
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv---f~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV---FKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H---HHHHHHHHHTT-EEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH---HHHHHHHhcCCCCCEEE
Confidence 4689999887776444333345 4799999999999977653 67888887 22 21 1346899999
Q ss_pred ec------ccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 204 NV------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 204 s~------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+- ....-..+..+.+..+.++|+|||.+++...
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 42 1111123667889999999999998876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0011 Score=62.53 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred eEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc--cccccCC---H----HHHHHHHH
Q 022305 161 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV--SVDYLTK---P----IEVFKEMC 222 (299)
Q Consensus 161 ~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~--~l~~~~d---~----~~~l~ei~ 222 (299)
.++|+|+++.|++.|+.+ ++|.++|+ ..++-+-+.+|+|||+- ..- +.+ . ..+.+.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~---~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA---TDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLK 331 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch---hhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHH
Confidence 377999999999988764 88999999 66654437899999982 111 112 1 23445666
Q ss_pred hhccCCcEEEEEec
Q 022305 223 QVLKPGGLAIVSFS 236 (299)
Q Consensus 223 rvLkpGG~lii~~~ 236 (299)
+.++--+.++|+..
T Consensus 332 ~~~~~ws~~v~tt~ 345 (381)
T COG0116 332 RLLAGWSRYVFTTS 345 (381)
T ss_pred HHhcCCceEEEEcc
Confidence 77776677777644
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0012 Score=60.15 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=69.0
Q ss_pred CceeeccCcCC--ccccC--CCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPG--VSHFP--PGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G--~~~~~--~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.+|+=+|||+= +.... ....+..++++|++++..+.+++ +++|+.+|. ...+..-..||+|+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~---~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV---LDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G---GGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch---hccccccccCCEEEE
Confidence 48999999833 21221 12246789999999999987654 378888898 555555578999886
Q ss_pred ccccc-ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCC
Q 022305 205 VVSVD-YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 205 ~~~l~-~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~ 283 (299)
..... --.+..++|.++.+.++||..+++-..+.. .......-++. .-.||+...+..-.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl-----R~~LYp~vd~~----------~l~gf~~~~~~hP~---- 259 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL-----RSFLYPVVDPE----------DLRGFEVLAVVHPT---- 259 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG-----GGGSS----TG----------GGTTEEEEEEE-------
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh-----HHHcCCCCChH----------HCCCeEEEEEECCC----
Confidence 54333 334788999999999999999988643211 00111101110 11389876664433
Q ss_pred CCCCeEEEEEEecC
Q 022305 284 RSDPMYVVYSRKAS 297 (299)
Q Consensus 284 ~~~p~~~v~arK~~ 297 (299)
..--.-+|++||..
T Consensus 260 ~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 260 DEVINSVVFARKKQ 273 (276)
T ss_dssp TT---EEEEE----
T ss_pred CCceeEEEEEEecc
Confidence 22345789999975
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=51.41 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=58.8
Q ss_pred cCCceeeccCcCCc-cccCC--CCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC-----CCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGV-SHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~--~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l 208 (299)
....|+|+|+-+|. +.++. ..+...|+|+|+-|--.- ..+.++++|+.....+ .+....+|+|+|-..-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap 121 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI---PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAP 121 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC---CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCC
Confidence 34689999998885 11111 113356999999873221 1288999998432221 1344557999964322
Q ss_pred --------cccC--CH-HHHHHHHHhhccCCcEEEEEe
Q 022305 209 --------DYLT--KP-IEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 209 --------~~~~--d~-~~~l~ei~rvLkpGG~lii~~ 235 (299)
+|.. .+ ..++.-...+|+|||.+++-+
T Consensus 122 ~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 122 NTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred CcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 3322 12 245556677999999998864
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.00035 Score=59.98 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=62.8
Q ss_pred CCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCC---CCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP---FEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lp---f~~~~FD~Vis 204 (299)
..++||+-||+|.--+ +......+|+.||.|+..++..+++ ++.+..|.. ..++ -....||+|+.
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~--~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF--KFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH--HHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH--HHHHhhcccCCCceEEEE
Confidence 4689999999997333 3343446999999999988765543 456667741 2222 24688999997
Q ss_pred cccccccCC--HHHHHHHHH--hhccCCcEEEEEecCc
Q 022305 205 VVSVDYLTK--PIEVFKEMC--QVLKPGGLAIVSFSNR 238 (299)
Q Consensus 205 ~~~l~~~~d--~~~~l~ei~--rvLkpGG~lii~~~~~ 238 (299)
- -.|-.+ ..++++.+. .+|+++|.++++....
T Consensus 121 D--PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 D--PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp ----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred C--CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 6 223222 367777776 8999999999997654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=57.66 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=59.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHH----HHHh--cCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEE----ELKR--NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~----ml~~--a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
.+.+|+|...|.|...-++. ...|.-+-.-+. .|.. .+..+- +..|-. |.++.-+.+||+|.+..++..
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~--~~~VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWC--E~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALI--DDPVWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWC--EAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ceeeeeeecccccHHHHHhc--cCCceEEEecccCCCCcchhhhhcccch-hccchh--hccCCCCcchhheehhhhhhh
Confidence 45689999998774332222 222333322222 1211 111121 223433 667777899999999988887
Q ss_pred cC---CHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LT---KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~---d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.. +...+|-||-|+|+|||.+||.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEe
Confidence 64 5788999999999999999996
|
; GO: 0008168 methyltransferase activity |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0022 Score=56.02 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=64.7
Q ss_pred HHHhhccC----CCcccccCcc-hhhccccHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 103 EDFQRFDE----SPDSLFYETP-RFVTHIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 103 ~~~~~~d~----~~~~~~y~~~-~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
..|.++|. ..+.||.-.| ....|++.....-. ....|+|.-||.|.........+..|++||++|.-+..|++
T Consensus 57 rlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Akh 134 (263)
T KOG2730|consen 57 RLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARH 134 (263)
T ss_pred HHHHhhccceeecccceEEeccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhc
Confidence 34555554 2233443333 44455544433332 34679999888777777777778999999999999988877
Q ss_pred C---------CcEEEeccCC-CCCCCCCCCCeeEEEec
Q 022305 178 L---------TEYVVQDLNL-NPKLPFEDNSFDVITNV 205 (299)
Q Consensus 178 ~---------~~~~~~D~~~-~~~lpf~~~~FD~Vis~ 205 (299)
+ ++|+++|.-+ ...+.+....+|+|+.+
T Consensus 135 NaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 135 NAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4 7899999721 02234555557777754
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0014 Score=62.06 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=42.9
Q ss_pred cccHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEecc
Q 022305 125 HIDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDL 186 (299)
Q Consensus 125 ~l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~ 186 (299)
.+.+.+++.+.....++||+-||.|+..++.+....+|+|||+++++++.|++ +++|+.++.
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 33344455554333479999999999888777777899999999999998765 367887665
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.008 Score=56.34 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=70.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCe-EEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDR-IVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~-v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....|+|.=+|-|-..++.+..+.. |+++|+||..++..+++ ++.+.+|. ......-+.||-|++++
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~---rev~~~~~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA---REVAPELGVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH---HHhhhccccCCEEEeCC
Confidence 3578999999999877776655544 99999999998865442 67889998 66665558899999885
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
- .+-.+++....+.+|+||.+..-
T Consensus 265 p----~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 265 P----KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred C----CcchhhHHHHHHHhhcCcEEEEE
Confidence 3 35567888888999999977663
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0034 Score=52.31 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCCeeEEEecccccccC-----C---H---HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHH
Q 022305 196 DNSFDVITNVVSVDYLT-----K---P---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 264 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~-----d---~---~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (299)
.++||.+.|.++++|+. | | .+.+.++.++|||||.+++++|-... .-.|..+..+.+.+ ..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d----~i~fNahRiYg~~r----L~ 132 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD----AIQFNAHRIYGPIR----LA 132 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc----ceEEecceeecHhH----HH
Confidence 57899999999999982 3 2 47888999999999999999875320 01122222222222 22
Q ss_pred HHhCCCCCCeeeecC
Q 022305 265 HYAGGYEPPQAVDIS 279 (299)
Q Consensus 265 ~~~aGF~~v~~~~~~ 279 (299)
..-.||+.+..+.-.
T Consensus 133 mm~~gfe~i~tfs~~ 147 (177)
T PF03269_consen 133 MMFYGFEWIDTFSGD 147 (177)
T ss_pred HHhCCcEEEeeeccC
Confidence 244788888776653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0028 Score=58.42 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=52.2
Q ss_pred HHHHHHhh-hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCC--CC
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP--FE 195 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lp--f~ 195 (299)
+++++.+. +....++|.+||.|. ..++...+ .++|+|+|.++.|++.+++ +++++++|. .++. .+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f---~~l~~~l~ 85 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF---SNLKEVLA 85 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH---HHHHHHHH
Confidence 45566664 444689999999886 33344443 5899999999999988764 367788887 4442 12
Q ss_pred CC--CeeEEEec
Q 022305 196 DN--SFDVITNV 205 (299)
Q Consensus 196 ~~--~FD~Vis~ 205 (299)
++ ++|.|+..
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 22 79999965
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0079 Score=56.37 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=67.1
Q ss_pred hcCCceeeccCcCCc-cccCCCCC-CCeEEEEeCCHHHHHhcCCC---------------CcEEEeccCCCCCC-CCCCC
Q 022305 136 KYYSEVFPPSNTPGV-SHFPPGYK-QDRIVGMGMNEEELKRNPVL---------------TEYVVQDLNLNPKL-PFEDN 197 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~-~~~~~~~~-~~~v~gvD~S~~ml~~a~~~---------------~~~~~~D~~~~~~l-pf~~~ 197 (299)
+...++|-+|.|.|. ..-..++| ..+++-+|+.|+|++.+++. ++.+..|. .+. .-..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA---f~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA---FQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH---HHHHHhhcc
Confidence 345789999999886 23344556 47999999999999988742 55666665 332 23456
Q ss_pred CeeEEEecccccccC-----CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 198 SFDVITNVVSVDYLT-----KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~-----d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.||.||.-.-=..-+ --.++..-+.|.|+++|.+++.-..
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 899998542100000 1136777889999999999997544
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0093 Score=48.81 Aligned_cols=69 Identities=17% Similarity=0.452 Sum_probs=45.8
Q ss_pred eEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-C-CCCCeeEEEecccccccC--C------H---HHHH
Q 022305 161 RIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-F-EDNSFDVITNVVSVDYLT--K------P---IEVF 218 (299)
Q Consensus 161 ~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f-~~~~FD~Vis~~~l~~~~--d------~---~~~l 218 (299)
+|+|.||-+++++..++ +++++..+= +++. + +++.+|+|+-+. -|+| | + ..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH---e~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH---ENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G---GGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH---HHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHH
Confidence 58999999999987654 266666654 4453 2 335899998774 4554 2 2 4788
Q ss_pred HHHHhhccCCcEEEEE
Q 022305 219 KEMCQVLKPGGLAIVS 234 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~ 234 (299)
+.+.++|+|||.+++.
T Consensus 76 ~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 76 EAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEE
Confidence 8999999999987765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.006 Score=59.17 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=73.5
Q ss_pred hhccccHHHHHHhhh-cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCC
Q 022305 122 FVTHIDDPAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL 192 (299)
Q Consensus 122 ~~~~l~~~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~l 192 (299)
....+...+.+.+.. ...++||+=||.|+..+..+....+|+|+|+++++++.|+++ ++|+.+|. +++
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a---e~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA---EEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHH
Confidence 333444445555543 335799999999998888888889999999999999977653 67888888 555
Q ss_pred CC---CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 193 PF---EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 193 pf---~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.. ....+|+|+.-= .--.-...+++.+. -++|-..++++..
T Consensus 354 ~~~~~~~~~~d~VvvDP--PR~G~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 354 TPAWWEGYKPDVVVVDP--PRAGADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred hhhccccCCCCEEEECC--CCCCCCHHHHHHHH-hcCCCcEEEEeCC
Confidence 43 235789888530 00000124555555 4578888888854
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0024 Score=53.29 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=66.2
Q ss_pred CceeeccCc-CCcc-c-cCCCCCCCeEEEEeCCHHHHHhcCCC---------Cc--EEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNT-PGVS-H-FPPGYKQDRIVGMGMNEEELKRNPVL---------TE--YVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG-~G~~-~-~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~--~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.+||++|.| +|.. . ++..-+...|.-.|-+++.++..++. .+ ....+... .+...+.++||.|+|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCcccEEEe
Confidence 479999988 5542 2 23333567899999999998754431 11 11112110 122345679999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
..++-.-+.....++-|++.|+|.|..++.-|.+
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 9988766666788899999999999876655553
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.00086 Score=56.36 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=56.1
Q ss_pred ceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC-C-CCCCC-eeEEEec--
Q 022305 140 EVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FEDNS-FDVITNV-- 205 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l-p-f~~~~-FD~Vis~-- 205 (299)
.|+|+.||.|...+..+....+|++||+++..++.++. +++++++|. .++ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~---~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF---FELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H---HHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH---HHHHhhccccccccEEEECCC
Confidence 58999999987555555556799999999999987765 378999998 333 2 22222 8999954
Q ss_pred -----------ccc-cccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 206 -----------VSV-DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 206 -----------~~l-~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
+-| .++. +..+.++...++-+ .+++-.|......+.
T Consensus 79 WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~---nv~l~LPRn~dl~ql 128 (163)
T PF09445_consen 79 WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITP---NVVLFLPRNSDLNQL 128 (163)
T ss_dssp BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S----EEEEEETTB-HHHH
T ss_pred CCCccccccCccCHHHccCCCCHHHHHHHHHhhCC---CEEEEeCCCCCHHHH
Confidence 122 2222 34566666555543 455556655544444
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0098 Score=50.91 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccc--c
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS--V 208 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~--l 208 (299)
+.+.|+|.|+|...+..+....+|++++.+|.-.+.|.++ ++.+++|+ ....| ..-|+|+|-.. .
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA---~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA---RDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc---ccccc--cccceeHHHHhhHH
Confidence 6789999999986665555578999999999988887775 56788888 66777 44799998532 2
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
--.+....+++.+...||-++.+|=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 2223445678888888999998753
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0076 Score=51.86 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.++|||+|+|+|.-.+.....+ ..|+..|+.+..++..+-+ +.+...|. +. .+..||+|+...++.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~-----~g-~~~~~Dl~LagDlfy 153 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL-----IG-SPPAFDLLLAGDLFY 153 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc-----cC-CCcceeEEEeeceec
Confidence 3689999999998666555444 5788999998777644332 55566665 22 677899999998876
Q ss_pred ccCCHHHHHHHHHhhccCCc-EEEEEecCcchH
Q 022305 210 YLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 241 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG-~lii~~~~~~~~ 241 (299)
.-+.-.+.+. +.+.|+-.| .+++..|.+..+
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 6555667777 666666656 566666665433
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0019 Score=56.47 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=52.7
Q ss_pred cCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCC-----------------CCcEEEeccCCCCCCCCCC-
Q 022305 137 YYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED- 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~-----------------~~~~~~~D~~~~~~lpf~~- 196 (299)
.-+..+|+|||.|...+. ....-.+.+||++.+...+.|.. .+++..+|+ .+.++.+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf---l~~~~~~~ 118 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF---LDPDFVKD 118 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T---TTHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc---cccHhHhh
Confidence 346799999999963332 12223459999999987664432 145566665 3322111
Q ss_pred --CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 197 --NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 197 --~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..-|+|++++.. +-++....|.++..-||+|-.+| +..
T Consensus 119 ~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~II-s~~ 158 (205)
T PF08123_consen 119 IWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARII-STK 158 (205)
T ss_dssp HGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEE-ESS
T ss_pred hhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEE-ECC
Confidence 235899998764 33466778888889999887765 443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0044 Score=55.88 Aligned_cols=65 Identities=12% Similarity=0.012 Sum_probs=49.2
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+..+.||++|.|+|..+......+.+|+++++.+.|+..-.+ +.+++++|. ...+ .-.||.+|++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---lK~d--~P~fd~cVsN 130 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---LKTD--LPRFDGCVSN 130 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc---ccCC--Ccccceeecc
Confidence 455789999999997666555578999999999999974332 367888998 4433 3459999986
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0063 Score=54.89 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=52.2
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCC-CeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDN-SFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~-~FD~Vis~~ 206 (299)
.+.||+||+|.|..+........+|+++++.+.+++.-++ +++.+.+|+ ...++++. .++.|+++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da---Lk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA---LKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch---hcCcchhhcCCCEEEEcC
Confidence 4789999999997666655567889999999999875443 477899999 77777654 688888873
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0071 Score=55.54 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH-------hcCCC---------------------------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK-------RNPVL--------------------------------- 178 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~-------~a~~~--------------------------------- 178 (299)
.+||-+|||.|...+.....+..+-|-++|--|+- ..+..
T Consensus 152 i~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~ 231 (369)
T KOG2798|consen 152 IRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPA 231 (369)
T ss_pred ceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccccc
Confidence 46999999988765555555667777788877753 11110
Q ss_pred --------CcEEEeccCCCCCCC--CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 179 --------TEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 179 --------~~~~~~D~~~~~~lp--f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.+...+|+. +-.+ -..++||+|+.++-+.--.+..+++..|..+|||||+.|
T Consensus 232 ~~~~~~~~fsicaGDF~--evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 232 SSNGNTGSFSICAGDFL--EVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccCCCCCCcccccccee--EEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 011223331 1011 122479999988777777889999999999999999765
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.015 Score=49.93 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=63.3
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCC--CCeeEEEecc
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFED--NSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~--~~FD~Vis~~ 206 (299)
.++||+=+|+|. +.-+.......++.||.+.......+++ .+.+..|.. .-++-.. ++||+|+.-=
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--RALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--HHHHhcCCCCcccEEEeCC
Confidence 589999999997 3334444457899999999998765543 556667762 1222222 2599999752
Q ss_pred ccc-ccCCHHHHHHH--HHhhccCCcEEEEEecCc
Q 022305 207 SVD-YLTKPIEVFKE--MCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 207 ~l~-~~~d~~~~l~e--i~rvLkpGG~lii~~~~~ 238 (299)
=.+ -+-+....+.. -..+|+|+|.++++....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 222 11222333333 567899999999987654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.032 Score=52.23 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=60.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH--hcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK--RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~--~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~ 214 (299)
....+||+||++|.-.......+.+|++||..+ |-. ....+++....|. ....-+.+.+|.++|-.+ ..|
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~---fr~~p~~~~vDwvVcDmv----e~P 282 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADG---FKFRPPRKNVDWLVCDMV----EKP 282 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccC---cccCCCCCCCCEEEEecc----cCH
Confidence 346899999999864333333477999999665 322 2233477777776 333222678999998754 578
Q ss_pred HHHHHHHHhhccCCc--EEEEE
Q 022305 215 IEVFKEMCQVLKPGG--LAIVS 234 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG--~lii~ 234 (299)
.++.+-|.+.|..|= .+|+.
T Consensus 283 ~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 283 ARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred HHHHHHHHHHHhcCcccEEEEE
Confidence 888888999987772 55654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.0054 Score=47.22 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=40.5
Q ss_pred eeccCcCCccc--cCCCCCC---CeEEEEeCCHH---HHHhcC-----CCCcEEEeccCCCCCCC-CCCCCeeEEEeccc
Q 022305 142 FPPSNTPGVSH--FPPGYKQ---DRIVGMGMNEE---ELKRNP-----VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVS 207 (299)
Q Consensus 142 LDiGcG~G~~~--~~~~~~~---~~v~gvD~S~~---ml~~a~-----~~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~ 207 (299)
|++|+..|.+. +....+. .+++++|..+. ..+..+ .+++++.++.. +.++ +..++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcCCCCEEEEEECC-
Confidence 57887666533 3333222 37999999993 333332 23777887762 2222 3357899998654
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
-|-.+.....++.+.+.|+|||.+++.
T Consensus 78 ~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 222345667889999999999999885
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.04 Score=51.55 Aligned_cols=104 Identities=11% Similarity=0.159 Sum_probs=61.4
Q ss_pred CceeeccCcCCccccCCC--CCC-CeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC-CCCeeEEEecc
Q 022305 139 SEVFPPSNTPGVSHFPPG--YKQ-DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE-DNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~--~~~-~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~-~~~FD~Vis~~ 206 (299)
.+|||+|.|+|++.++.. +|. ..++-++.|+..-+.... ...+...|+.. +.++++ ...|++|+..+
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~-dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTE-DRLSLPAADLYTLAIVLD 193 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccch-hccCCCccceeehhhhhh
Confidence 579999999998776542 233 356666777765443211 12233333311 223332 24577777766
Q ss_pred cccccCC---HHHHHHHHHhhccCCcEEEEEecC-cchHHH
Q 022305 207 SVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSN-RCFWTK 243 (299)
Q Consensus 207 ~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~-~~~~~~ 243 (299)
-|-+... ....++.++.++.|||+++|..+. +..|..
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~ 234 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFER 234 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHH
Confidence 6555532 345789999999999988775443 444433
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.32 Score=44.10 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=68.2
Q ss_pred hhcCCceeeccCcCCc-ccc-C-CCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCC--CCCCee
Q 022305 135 TKYYSEVFPPSNTPGV-SHF-P-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF--EDNSFD 200 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~-~~~-~-~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf--~~~~FD 200 (299)
.+....|++-|.|+|. ++. + ..-|.++++-.|+.+.-.++|.+ ++++.+-|+ ....| .+..+|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV---c~~GF~~ks~~aD 179 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV---CGSGFLIKSLKAD 179 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec---ccCCccccccccc
Confidence 3456789999999986 222 1 12256899999998877776654 378888998 44444 457788
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.|+.- ++.|..++--++.+||.+|.-+++|.
T Consensus 180 aVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 180 AVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred eEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence 88754 57888888889999999986555554
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.014 Score=53.55 Aligned_cols=98 Identities=22% Similarity=0.278 Sum_probs=64.7
Q ss_pred hcCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC-C-CCCCCeeEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P-FEDNSFDVI 202 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l-p-f~~~~FD~V 202 (299)
.....|||.++++|. .+++.... .+.+++.|+++.=++..++ .+.....|. ..+ + .....||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~---~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA---RKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH---HHHHHHHHTTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc---ccccccccccccchh
Confidence 345689999999996 44444433 5899999999987764433 244455666 333 1 233469999
Q ss_pred E----eccc--ccccCC----------------HHHHHHHHHhhc----cCCcEEEEEec
Q 022305 203 T----NVVS--VDYLTK----------------PIEVFKEMCQVL----KPGGLAIVSFS 236 (299)
Q Consensus 203 i----s~~~--l~~~~d----------------~~~~l~ei~rvL----kpGG~lii~~~ 236 (299)
+ |+.. +..-++ -.+.|+...+.+ ||||.++-++-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9 3322 222222 136888999999 99999888764
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.035 Score=54.24 Aligned_cols=48 Identities=8% Similarity=0.214 Sum_probs=41.4
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEecc
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 186 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~ 186 (299)
..+||+.||+|+.-+..+.+-.+|+||+++++.++-|+.+ .+|+++-.
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 5689999999998888888889999999999999877763 77888844
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.035 Score=48.36 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred cCCceeeccCcCCccc------cCCCCCCCeEEEEeCCHHHH-----Hh--cCCCCcEEEeccCCCCCC-CC--CCCCee
Q 022305 137 YYSEVFPPSNTPGVSH------FPPGYKQDRIVGMGMNEEEL-----KR--NPVLTEYVVQDLNLNPKL-PF--EDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~------~~~~~~~~~v~gvD~S~~ml-----~~--a~~~~~~~~~D~~~~~~l-pf--~~~~FD 200 (299)
..+.|+++|.-.|.+. +......++|+|||+..... +. ...+++++++|.+..+.+ +. .....+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4578999998665422 22222568999999954333 22 114699999998432111 11 111123
Q ss_pred -EEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH---HHhhhhcCCCchhhhHHHHHHHhCCCC
Q 022305 201 -VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA---ISIWTSTGDADHVMIVGAYFHYAGGYE 271 (299)
Q Consensus 201 -~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~aGF~ 271 (299)
++++-.+-|.-.+..+.|+....+++||+++|++......+... -..|...+ .....+.+|++....|+
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~--~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGN--NPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEE
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhh--HHHHHHHHHHHHCCCcE
Confidence 23333444444677888899999999999999975543333222 12233221 23445666776433344
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.046 Score=51.27 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=59.8
Q ss_pred cCCceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCCC-Cc-EEEe-ccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPVL-TE-YVVQ-DLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~~-~~-~~~~-D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
.-++|+=.|+| |.+++..++ .+++|+++|.|++-++.|++. .+ ++.. |. ...+--.+.||+|+..-.
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~---~~~~~~~~~~d~ii~tv~--- 238 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAVKEIADAIIDTVG--- 238 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc---hhhHHhHhhCcEEEECCC---
Confidence 34678888998 887775443 358999999999999988886 22 2221 12 222222234999998754
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...+.+..+.||+||.+++.
T Consensus 239 ----~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 ----PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred ----hhhHHHHHHHHhcCCEEEEE
Confidence 45677888899999977653
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.32 Score=43.28 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=83.7
Q ss_pred CceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhc-CCC---CcEEEeccCCCCCCC---CCCCCeeEEEecccccc
Q 022305 139 SEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRN-PVL---TEYVVQDLNLNPKLP---FEDNSFDVITNVVSVDY 210 (299)
Q Consensus 139 ~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a-~~~---~~~~~~D~~~~~~lp---f~~~~FD~Vis~~~l~~ 210 (299)
..+||+|+.+|. ...+.......|+|+|..-.++..- +.. +.+...|+ ..+. +.+ ..|+++|-.++-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~---r~l~~~~~~~-~~d~~v~DvSFI- 155 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNV---RYLTPEDFTE-KPDLIVIDVSFI- 155 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCCh---hhCCHHHccc-CCCeEEEEeehh-
Confidence 579999999885 2333333457899999998877532 222 22333444 2221 333 678999876654
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecC-cchHHHHHHhhh-hcCCCchhhhHHHH--HHHhCCCCCCeeeecCCCCCCCC
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSN-RCFWTKAISIWT-STGDADHVMIVGAY--FHYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
....+|..+..+|+|+|.++.-+-+ -..-.+....-. -.....|.....+. +....||....+...+-..+..+
T Consensus 156 --SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GN 233 (245)
T COG1189 156 --SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGKGN 233 (245)
T ss_pred --hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCCCc
Confidence 5678899999999999977664432 111111111000 11222343444442 22456898665543322222223
Q ss_pred CeEEEEEEecC
Q 022305 287 PMYVVYSRKAS 297 (299)
Q Consensus 287 p~~~v~arK~~ 297 (299)
-=|.+..+|.+
T Consensus 234 iE~l~~~~k~~ 244 (245)
T COG1189 234 IEFLLLLKKSG 244 (245)
T ss_pred EeeeeeeeccC
Confidence 34666666653
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.1 Score=46.74 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=61.5
Q ss_pred HHHHHHhhh---cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCC
Q 022305 128 DPAIAALTK---YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 128 ~~~~~~l~~---~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~ 195 (299)
+.+.+.+.. ...+|+|+|||---..+ ....++..++|.||+..+++.... ..+....|+ ..- -+
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl---~~~-~~ 168 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDL---LSD-PP 168 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-T---TTS-HT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeee---ecc-CC
Confidence 334444433 35789999998543222 122245799999999999986443 356777787 332 24
Q ss_pred CCCeeEEEecccccccCCHHH-HHHHHHhhccCCcEEEEEecCcch
Q 022305 196 DNSFDVITNVVSVDYLTKPIE-VFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~-~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
....|+.+..=+++.++.... .--++...++ .=+++++||.+..
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL 213 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL 213 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccccc
Confidence 567999999888887753322 2223333333 1278889987543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.093 Score=42.77 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=51.7
Q ss_pred cCCceeeccCcCCc-cccCCC-----CCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGV-SHFPPG-----YKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~~-----~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~~~~lpf~~~~F 199 (299)
....|+|+|||.|. +.+... .++.+|+|||.++..++.+.++ .++..++. .... ..+..
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI---ADES-SSDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch---hhhc-ccCCC
Confidence 35689999999995 222111 3678999999999998866543 22333332 1111 14456
Q ss_pred eEEEecccccccCCHH-HHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVDYLTKPI-EVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~-~~l~ei~rvLkpGG~lii~~~ 236 (299)
++++..+ -..++- .+|+-..+ |+-.+++.+|
T Consensus 101 ~~~vgLH---aCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 101 DILVGLH---ACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred eEEEEee---cccchHHHHHHHHHH---cCCCEEEEcC
Confidence 6666554 344443 34444444 5555555444
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.2 Score=39.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred hhccccHHHHHHh----hhcCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCH----HHHHhcCCC--CcEEEeccCC
Q 022305 122 FVTHIDDPAIAAL----TKYYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNE----EELKRNPVL--TEYVVQDLNL 188 (299)
Q Consensus 122 ~~~~l~~~~~~~l----~~~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~----~ml~~a~~~--~~~~~~D~~~ 188 (299)
|...|+..++.-+ .+.-.+||=+|.++|+ +|..... +..-|++++.|+ +.+..|+++ +--+..|+..
T Consensus 137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArh 216 (317)
T KOG1596|consen 137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARH 216 (317)
T ss_pred HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCC
Confidence 4445544444333 3455789999999887 5665433 457899999996 445666665 4445667621
Q ss_pred CCCCCCCCCCeeEEEecccccccCCH-HHHHHHHHhhccCCcEEEEEecCcc
Q 022305 189 NPKLPFEDNSFDVITNVVSVDYLTKP-IEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 189 ~~~lpf~~~~FD~Vis~~~l~~~~d~-~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
..+.-..-.-.|+|++-.. + +|. .-+.-+..-.||+||+++|++...|
T Consensus 217 P~KYRmlVgmVDvIFaDva--q-pdq~RivaLNA~~FLk~gGhfvisikanc 265 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFVISIKANC 265 (317)
T ss_pred chheeeeeeeEEEEeccCC--C-chhhhhhhhhhhhhhccCCeEEEEEeccc
Confidence 1111122335677766421 1 233 3344577889999999999876544
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.14 Score=46.02 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=65.7
Q ss_pred cCCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHH--hcCC-------C--CcEEEecc--CCCCCCCCCCCC-eeE
Q 022305 137 YYSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELK--RNPV-------L--TEYVVQDL--NLNPKLPFEDNS-FDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~--~a~~-------~--~~~~~~D~--~~~~~lpf~~~~-FD~ 201 (299)
.+.++|++|+|+|. +.........+++-.|+...+.. .+.+ + .+..+..+ .......+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 35689999999997 44444446788888888765543 2211 0 12333222 100111122233 999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+++.++.+-..+..++.-+...|-.+|.+++.++-+
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999988888888888889998888777766543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.34 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR 174 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~ 174 (299)
-.+.|||||=|. -.+...+|..-+.|++|-...-+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdY 99 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDY 99 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHH
Confidence 368999999664 445566688899999987665543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.079 Score=47.91 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=56.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCC---CCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED---NSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~---~~FD~Vis~~~ 207 (299)
.-..|||+|.|.|..+......+.+++++|+++.+.+.-++ +++++.+|+ ..+...+ +.-..|+++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~---l~~~~~~~~~~~~~~vv~Nl- 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF---LKWDLYDLLKNQPLLVVGNL- 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T---TTSCGGGHCSSSEEEEEEEE-
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecch---hccccHHhhcCCceEEEEEe-
Confidence 45689999999997444333334899999999999875433 578999999 6776544 4566777763
Q ss_pred ccccCCHHHHHHHHHhhccC
Q 022305 208 VDYLTKPIEVFKEMCQVLKP 227 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkp 227 (299)
.+ .--...+.++...-+.
T Consensus 106 -Py-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 106 -PY-NISSPILRKLLELYRF 123 (262)
T ss_dssp -TG-TGHHHHHHHHHHHGGG
T ss_pred -cc-cchHHHHHHHhhcccc
Confidence 33 2234566666654344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.054 Score=49.23 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=57.9
Q ss_pred cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC-C--CcEE----EeccC-----CCC---C--CCCCC-C
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV-L--TEYV----VQDLN-----LNP---K--LPFED-N 197 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~-~--~~~~----~~D~~-----~~~---~--lpf~~-~ 197 (299)
..++|||+|||+|.-.+.....+ ..+...|+|.+.++.-.- + +.+. ..|.. ... + +.+.. -
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 34689999999887333333233 788889999888742111 0 0000 00000 001 0 11111 2
Q ss_pred CeeEEEecccccccCCHHHH-HHHHHhhccCCcEEEE
Q 022305 198 SFDVITNVVSVDYLTKPIEV-FKEMCQVLKPGGLAIV 233 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~-l~ei~rvLkpGG~lii 233 (299)
.||+|.++.++.-.+..... .......++++|.+++
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 79999999888877766666 6677778899997755
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.9 Score=37.14 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=56.4
Q ss_pred hhcCCceeeccCcCCc---cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEe-ccCCCCCC-----CCCCCCeeEEEec
Q 022305 135 TKYYSEVFPPSNTPGV---SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQ-DLNLNPKL-----PFEDNSFDVITNV 205 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~-D~~~~~~l-----pf~~~~FD~Vis~ 205 (299)
.+...+|||+||.+|. -......|.+.|.|||+-+-. ..+.+.++.+ |+.+.+.. ..++...|+|+|-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---PPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---CCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 3445799999999886 111223377899999985421 1222455554 55321110 1356789999976
Q ss_pred cccc----ccCCHH-------HHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVD----YLTKPI-------EVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~----~~~d~~-------~~l~ei~rvLkpGG~lii~~ 235 (299)
..-. -+.|.. .++.-....++|+|.++.-+
T Consensus 144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 4321 112222 34444456778999998864
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.25 Score=48.96 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCC--------CC--C--------CCC
Q 022305 138 YSEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNP--------KL--P--------FED 196 (299)
Q Consensus 138 ~~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~--------~l--p--------f~~ 196 (299)
..+|+=+||| .|.... .....+++|+++|.+++-++++++. .++...|..... .+ . +.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 4678899998 554222 1222467899999999999988774 454433321000 00 0 111
Q ss_pred --CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 197 --NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 197 --~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
+.+|+||.......-+.|.-+.+++.+.+||||.++.
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 4699999887655444565556999999999997654
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.068 Score=43.09 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=28.1
Q ss_pred ceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC
Q 022305 140 EVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV 177 (299)
Q Consensus 140 ~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~ 177 (299)
.++|+|||.|...+ ....+..+++++|+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence 37999999997322 333345689999999999876544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.2 Score=43.74 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=63.8
Q ss_pred eeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCC-CeeEEEecccc
Q 022305 141 VFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDN-SFDVITNVVSV 208 (299)
Q Consensus 141 vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~-~FD~Vis~~~l 208 (299)
|.|+||--|. ..+.......+++++|+++..++.|++ ++++..+|.- .. ++.+ ..|+|+...+-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL--~~--l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL--EV--LKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG--GG----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc--cc--cCCCCCCCEEEEecCC
Confidence 5799998774 222223234589999999999998765 2778888851 22 3333 36877755332
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
-. -..+.|++....++..-.||+.-.+ +...+.+++ ...||...+-.-+.
T Consensus 77 G~--lI~~ILe~~~~~~~~~~~lILqP~~------------------~~~~LR~~L-~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 77 GE--LIIEILEAGPEKLSSAKRLILQPNT------------------HAYELRRWL-YENGFEIIDEDLVE 126 (205)
T ss_dssp HH--HHHHHHHHTGGGGTT--EEEEEESS-------------------HHHHHHHH-HHTTEEEEEEEEEE
T ss_pred HH--HHHHHHHhhHHHhccCCeEEEeCCC------------------ChHHHHHHH-HHCCCEEEEeEEEe
Confidence 11 2456677777777766677775221 122334444 45889877665555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.13 Score=45.59 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=31.5
Q ss_pred cEEEeccCCCCCC--CCCCCCeeEEEec--cc--ccc-----c--C---C-HHHHHHHHHhhccCCcEEEE
Q 022305 180 EYVVQDLNLNPKL--PFEDNSFDVITNV--VS--VDY-----L--T---K-PIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 180 ~~~~~D~~~~~~l--pf~~~~FD~Vis~--~~--l~~-----~--~---d-~~~~l~ei~rvLkpGG~lii 233 (299)
+++.+|. .++ .++++++|+|+.. +. ..+ + . + ...+++|++|+|||||.+++
T Consensus 3 ~l~~gD~---le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNC---IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechH---HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455565 222 4677888888754 10 010 0 0 1 25789999999999998776
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.13 Score=46.99 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=33.5
Q ss_pred cEEEeccCCCCCC--CCCCCCeeEEEec--ccc--c------------ccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 180 EYVVQDLNLNPKL--PFEDNSFDVITNV--VSV--D------------YLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 180 ~~~~~D~~~~~~l--pf~~~~FD~Vis~--~~l--~------------~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.++++|. .+. .+++++||+|++. +-+ . |..-....+.++.|+|||||.+++..
T Consensus 10 ~i~~gD~---~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDA---LTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccH---HHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4556665 332 3556778888873 111 0 11113578999999999999888753
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.6 Score=37.95 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=52.7
Q ss_pred cCCceeeccCcCCc--cccC-CCCCCCeEEEEeCCHHHH----------HhcCC----CCcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGV--SHFP-PGYKQDRIVGMGMNEEEL----------KRNPV----LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~-~~~~~~~v~gvD~S~~ml----------~~a~~----~~~~~~~D~~~~~~lpf~~~~F 199 (299)
.-..|+|+=.|.|. ..+. ..-+...|++.-..+... ..+++ +.+.+-.+. ..++ +.+..
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~---~A~~-~pq~~ 123 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL---VALG-APQKL 123 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc---cccC-CCCcc
Confidence 34678898777773 2222 122345777765444321 11211 233333333 3344 44556
Q ss_pred eEEEeccccc-------ccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVD-------YLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~-------~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+++....-| |-....++.+++++.|||||.+++...
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6666532222 123457899999999999998777643
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.35 Score=46.93 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCceeeccCcCCccccCC--CCC--CCeEEEEeCCHHHHHhcCCC-------CcEEEec-cCCCCCCCC-CCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFPP--GYK--QDRIVGMGMNEEELKRNPVL-------TEYVVQD-LNLNPKLPF-EDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~~~--~~~v~gvD~S~~ml~~a~~~-------~~~~~~D-~~~~~~lpf-~~~~FD~Vis 204 (299)
++.++|+|.|.|.+..+. .++ ...++.||.|..|++..... -...+.. .-....+|. ..+.||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 456889999877633332 222 35799999999999865432 1111111 100134454 3456999999
Q ss_pred cccccccCCH---HHHHHHHH-hhccCCcEEEEE
Q 022305 205 VVSVDYLTKP---IEVFKEMC-QVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~---~~~l~ei~-rvLkpGG~lii~ 234 (299)
.+.++++.+. ..+.++.+ +..++||.+++.
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 9999999754 34455554 456888866654
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.57 Score=44.27 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=72.4
Q ss_pred cccCcc-hhhccccHHHHHHhhhc-CCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCCC--------CcEE
Q 022305 115 LFYETP-RFVTHIDDPAIAALTKY-YSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPVL--------TEYV 182 (299)
Q Consensus 115 ~~y~~~-~~~~~l~~~~~~~l~~~-~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~~--------~~~~ 182 (299)
.||... ++...+.-.++..+.+. ..+|+|.=+|+|..-+.... ...+++.-|+||++.+..+++ ...+
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~ 107 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVI 107 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceee
Confidence 344432 34444544455555543 57899999999984443332 334899999999999876654 2333
Q ss_pred EeccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 183 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 183 ~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..|.| .-+--....||+|= +.-+..|.-++....+.+|.||++.++-
T Consensus 108 n~DAN--~lm~~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 108 NKDAN--ALLHELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cchHH--HHHHhcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 34542 11111125566652 2334467889999999999999998873
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.098 Score=48.25 Aligned_cols=70 Identities=9% Similarity=-0.051 Sum_probs=35.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCC--CCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNL--NPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~--~~~lpf~~~~FD~Vis 204 (299)
-++||||+|... ..+.....+.+++|+|+++..++.|+++ ++++...-.. ...+..+++.||+.+|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 469999998553 2222233478999999999999977652 5555443210 0112234568999999
Q ss_pred cccc
Q 022305 205 VVSV 208 (299)
Q Consensus 205 ~~~l 208 (299)
+==+
T Consensus 184 NPPF 187 (299)
T PF05971_consen 184 NPPF 187 (299)
T ss_dssp ----
T ss_pred CCcc
Confidence 8433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.11 Score=44.81 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=37.1
Q ss_pred cHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC
Q 022305 127 DDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP 176 (299)
Q Consensus 127 ~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~ 176 (299)
.+.++....+..+.|||.=||+|+...+....+.+.+|+|++++..+.|+
T Consensus 181 ~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 181 IERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 34455555667788999999999977776667889999999999988764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.2 Score=45.90 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=42.9
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLT 179 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~ 179 (299)
+.++....+..+.|||.=||+|+..++....+.+.+|+|++++..+.|.+++
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 4445555667788999999999988877777899999999999999888764
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.41 Score=47.48 Aligned_cols=94 Identities=13% Similarity=0.221 Sum_probs=61.0
Q ss_pred CceeeccCc-CCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCC--------C----C--------CCCC
Q 022305 139 SEVFPPSNT-PGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--------P----K--------LPFE 195 (299)
Q Consensus 139 ~~vLDiGcG-~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~--------~----~--------lpf~ 195 (299)
.+++=+|+| .|.... .....++.|+.+|.+++-++.++.. .+++..|.... . . ++-.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 578888887 554222 1122367899999999988877763 34444333100 0 0 1111
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
-..+|+|++.-.+.--+.|.-+.+++.+.+|||+.++
T Consensus 245 ~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 2569999988766666667668899999999999765
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.55 Score=45.05 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=63.4
Q ss_pred hcCCceeeccCcCCc--cccCCCCCC-CeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC---CCCCCeeE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQ-DRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP---FEDNSFDV 201 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~-~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp---f~~~~FD~ 201 (299)
+...+|||.++.+|. .+++..+.+ +.|++.|.+.+-++.-..+ ......|. ..+| |+. +||-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~---~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG---REFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc---ccccccccCc-ccce
Confidence 345789999998774 555554443 7899999998877654332 33444555 4443 444 8999
Q ss_pred EE----ecc--ccc------ccC---C-------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 IT----NVV--SVD------YLT---K-------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vi----s~~--~l~------~~~---d-------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+ |+. ++. +.. | ..+.|......+|+||+++-++-.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 98 443 211 111 1 236777888999999999887543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.4 Score=41.84 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=57.0
Q ss_pred CCceeeccCcC-Ccc--ccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCC-----C-CC-CCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTP-GVS--HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPK-----L-PF-EDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~-G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~-----l-pf-~~~~FD~Vis~~~ 207 (299)
-.+||..|||. |.. .++......+++++|.++++++.+++.......+... .. + .+ ..+.+|+|+....
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEE-VDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCc-chHHHHHHHHHcCCCCCCEEEECCC
Confidence 35788888863 432 2222222236999999999998876641111112100 11 1 12 2346999987532
Q ss_pred c-----------cc----cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 V-----------DY----LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l-----------~~----~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
- .| ..+....+.++.+.|+|+|.+++-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 1 11 245677899999999999977653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=85.11 E-value=0.66 Score=43.00 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=49.3
Q ss_pred HHHHHHhh-hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCC----
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP---- 193 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lp---- 193 (299)
+++++.|. +....++|.-+|.|. ..+....+.++|+|+|.++.+++.+++ +++++.++. .++.
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF---~~l~~~l~ 86 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF---ANFFEHLD 86 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH---HHHHHHHH
Confidence 44566663 344579999999775 333444445899999999999987754 355666665 3332
Q ss_pred -CCCCCeeEEEec
Q 022305 194 -FEDNSFDVITNV 205 (299)
Q Consensus 194 -f~~~~FD~Vis~ 205 (299)
...+++|.|+..
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 133568888743
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.3 Score=42.09 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=61.4
Q ss_pred cCCceeeccCcCCc------cccCCCCCCCeEEEEeCCHHHHHhcCCC-----Cc----EEEeccCCCCCCCC----CCC
Q 022305 137 YYSEVFPPSNTPGV------SHFPPGYKQDRIVGMGMNEEELKRNPVL-----TE----YVVQDLNLNPKLPF----EDN 197 (299)
Q Consensus 137 ~~~~vLDiGcG~G~------~~~~~~~~~~~v~gvD~S~~ml~~a~~~-----~~----~~~~D~~~~~~lpf----~~~ 197 (299)
...+|.|+.||+|. ..+........++|.|+++.+...++-+ ++ ...+|-. .+... ..+
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl--~~~~~~~~~~~~ 263 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL--SNPKHDDKDDKG 263 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc--cCCcccccCCcc
Confidence 55689999999995 1111111136799999999998877643 32 2233321 11112 447
Q ss_pred CeeEEEec--cc-ccccC---------------------C-HHHHHHHHHhhccCCcEEEEEecCc
Q 022305 198 SFDVITNV--VS-VDYLT---------------------K-PIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 198 ~FD~Vis~--~~-l~~~~---------------------d-~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.||.|+++ ++ -.|.. . ...+++.+.+.|+|||..-|.+++.
T Consensus 264 ~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 264 KFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred ceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 79999976 11 11110 1 1578899999999999766666653
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.68 E-value=1.5 Score=38.90 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCceeeccCcCCc--c----ccCC--C---CCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCCC-----CCCCCCee
Q 022305 138 YSEVFPPSNTPGV--S----HFPP--G---YKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKL-----PFEDNSFD 200 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~----~~~~--~---~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~l-----pf~~~~FD 200 (299)
..+++|++..+|. . .+.. . .....+++||+-+ | |.- .+.-+++|++....+ -|..+.-|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M---aPI~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M---APIEGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C---CccCceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 4678999887775 1 1111 1 1112599999865 2 221 255677887322111 25667899
Q ss_pred EEEeccc-----ccccCC------HHHHHHHHHhhccCCcEEEEE
Q 022305 201 VITNVVS-----VDYLTK------PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 201 ~Vis~~~-----l~~~~d------~~~~l~ei~rvLkpGG~lii~ 234 (299)
+|+|-.. +|-+++ +..+|.-...+|||||.|+--
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 9998644 443332 234566678999999999865
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.59 E-value=0.41 Score=42.40 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
+.++....+..+.|||.=||+|+...+....+.+.+|+|++++..+.+.++
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 444555566677899999999997777766788999999999998877664
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.51 E-value=3 Score=40.85 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.6
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccC---CCCCCC---------CCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLN---LNPKLP---------FEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~---~~~~lp---------f~~~~FD~Vis 204 (299)
.++|-+|-|+|. ..+-...+...+++|++.|+|++.+++...|.+.|-+ ....++ -++..||+++.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~ 376 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMV 376 (482)
T ss_pred CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEE
Confidence 345555555553 4445566778999999999999999886544443310 001111 24667998872
Q ss_pred ----cccccccCC------HHHHHHHHHhhccCCcEEEEEe--cCcchHHHHHHh
Q 022305 205 ----VVSVDYLTK------PIEVFKEMCQVLKPGGLAIVSF--SNRCFWTKAISI 247 (299)
Q Consensus 205 ----~~~l~~~~d------~~~~l~ei~rvLkpGG~lii~~--~~~~~~~~~~~~ 247 (299)
.. .|-+.- -..+|..++.+|.|.|.++|-. .+..+..+....
T Consensus 377 dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~ 430 (482)
T KOG2352|consen 377 DVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMN 430 (482)
T ss_pred ECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHh
Confidence 23 233321 2467888999999999998864 334444444433
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.39 E-value=1 Score=43.07 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=44.2
Q ss_pred CCcEEEeccCCCCCCC-CCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 178 LTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 178 ~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+++++.+++. +-+. .+++++|.++.+..+.|++ +..+.++++.|.++|||.+++-
T Consensus 276 rv~i~t~si~--~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 276 RVRIHTDSIE--EVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred eEEEEeccHH--HHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4777777772 2222 5689999999999999996 4568899999999999998884
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.61 E-value=2.1 Score=39.40 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=61.3
Q ss_pred cCCceeeccCcCC-ccccC-CCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCC--CCCCCCee
Q 022305 137 YYSEVFPPSNTPG-VSHFP-PGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL--PFEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G-~~~~~-~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~l--pf~~~~FD 200 (299)
.++++|-+|.|-| ....- ....-.++.-+|+.+..++..++ ++....+|. -.+ ....++||
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG---~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG---FLFLEDLKENPFD 197 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH---HHHHHHhccCCce
Confidence 3578999998855 32222 22223578888998888875443 366777776 222 23478999
Q ss_pred EEEecccccccC----CHHHHHHHHHhhccCCcEEEEE
Q 022305 201 VITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 201 ~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+|+.-.+=.-.+ -...++.-+.+.||+||++++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 998543211111 1246778899999999988775
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.4 Score=36.63 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=68.4
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHH------h----cCCCCcEEEeccCCCCCC------
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELK------R----NPVLTEYVVQDLNLNPKL------ 192 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~------~----a~~~~~~~~~D~~~~~~l------ 192 (299)
+.+.+.+....|+.+|||-=+..+....+ +..++=+|.-+.+-. . ...+..++.+|++ ..+
T Consensus 74 i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~--~~w~~~L~~ 151 (260)
T TIGR00027 74 LLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR--QDWPAALAA 151 (260)
T ss_pred HHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch--hhHHHHHHh
Confidence 33344444567999999865544444333 467777776553321 1 1223667778874 222
Q ss_pred -CCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 193 -PFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 193 -pf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.|..+.--++++-.++.|++ +..++|+.+.+...||+.++++..++
T Consensus 152 ~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 152 AGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 13233344788888899996 45679999999888999999997654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.71 E-value=1.2 Score=44.03 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=62.2
Q ss_pred CceeeccCcCCc---ccc---CCCCCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 139 SEVFPPSNTPGV---SHF---PPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 139 ~~vLDiGcG~G~---~~~---~~~~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
..|+-+|.|-|- ..+ .......++++|+-+|+++-.-. .+++.+..|+ ..++-+..+.|+++|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM---R~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM---RKWNAPREQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc---cccCCchhhccchHH
Confidence 346777888773 111 11113568999999998865322 2488999999 788755688999987
Q ss_pred cccccccCC---HHHHHHHHHhhccCCcEEE
Q 022305 205 VVSVDYLTK---PIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 205 ~~~l~~~~d---~~~~l~ei~rvLkpGG~li 232 (299)
-. |-.+.| -++.|.-+.+.|||+|..|
T Consensus 446 EL-LGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 446 EL-LGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred Hh-hccccCccCCHHHHHHHHhhcCCCceEc
Confidence 54 333332 2688999999999998654
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=82.59 E-value=1.8 Score=39.82 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=27.4
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+.||+|+..+..-|+=.|. +.++++|||.++++..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEta 255 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETA 255 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcc
Confidence 47799999776655553443 7779999999999865
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=81.40 E-value=2.4 Score=40.60 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=34.5
Q ss_pred CCCCCCeeEEEecccccccCCHH--------------------------------------HHHHHHHhhccCCcEEEEE
Q 022305 193 PFEDNSFDVITNVVSVDYLTKPI--------------------------------------EVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 193 pf~~~~FD~Vis~~~l~~~~d~~--------------------------------------~~l~ei~rvLkpGG~lii~ 234 (299)
-|++++.++++|++++||+.+.+ .+|+-=.+-|.|||.+++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 48899999999999999996311 2333345668999999998
Q ss_pred ecCc
Q 022305 235 FSNR 238 (299)
Q Consensus 235 ~~~~ 238 (299)
+..+
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7553
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.23 E-value=1.5 Score=40.70 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCceeeccCcCCccccCC---CCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCC--CCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL--NPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~--~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
-++||=.||| |.+.+.. ...+. +|+++|.+++-++.+++. .+.+ .|... ...+....+.||+|+-...
T Consensus 170 g~~VlV~G~G-~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVG-PIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL-VNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE-ecCCcccHHHHhccCCCCCEEEECCC---
Confidence 3577878875 3433321 12344 799999999999888764 2221 12100 0111111235898876533
Q ss_pred cCCHHHHHHHHHhhccCCcEEEE
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. ...+....+.|++||.+++
T Consensus 245 --~-~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 245 --H-PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred --C-HHHHHHHHHHhhcCCEEEE
Confidence 1 3467888899999997765
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=81.20 E-value=1.5 Score=41.23 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=14.9
Q ss_pred CCCCCCCCCeeEEEecccccccC
Q 022305 190 PKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 190 ~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
..--|++++.|+++|.+++||+.
T Consensus 99 y~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 99 YGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp TS--S-TT-EEEEEEES-TTB-S
T ss_pred hhccCCCCceEEEEEechhhhcc
Confidence 34448999999999999999994
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=80.71 E-value=0.54 Score=36.70 Aligned_cols=32 Identities=6% Similarity=-0.024 Sum_probs=22.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMN 168 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S 168 (299)
.+...+|+|||.|........-+..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 34579999999997433333346677888864
|
; GO: 0008168 methyltransferase activity |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=80.19 E-value=3.6 Score=33.29 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCCCc-EEEeccC-CCCCCCCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTE-YVVQDLN-LNPKLPFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~~~-~~~~D~~-~~~~lpf~~~~FD~Vi 203 (299)
-.+|+|+|.+.|.+.+-..+.+ ..|+++++++...+..++.+. +...|-. .....+-.-+.||+.+
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFV 97 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEE
Confidence 3689999999998777666666 479999999999887766432 2222210 0123443446688765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 299 | ||||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 2e-04 |
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 8e-12
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSN 237
E++V D KL FED +FD + + S+ + +VFKE+ +VLKP G I+ F++
Sbjct: 88 EFIVGDAR---KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144
Query: 238 RCFWTKAISIWTSTGDADHV 257
+ G +
Sbjct: 145 LRELLPRLKESLVVGQKYWI 164
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 161 RIVGMGMNEEELKR-----------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209
I + ++ + + + + V D++ +P EDN D+I + SV
Sbjct: 68 SIRALDFSKHMNEIALKNIADANLNDRI--QIVQGDVH---NIPIEDNYADLIVSRGSVF 122
Query: 210 YLTKPIEVFKEMCQVLKPGGLAIVS 234
+ F+E+ ++LK GG +
Sbjct: 123 FWEDVATAFREIYRILKSGGKTYIG 147
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-11
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 241
LPFE+ F+ I + S+++ +P+ E+ +VLK G A ++
Sbjct: 109 SLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAK 159
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 5e-11
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 161 RIVGMGMNEEELK--RNPVLTEYVVQDLNLNPKLPFEDNSFD-VITNVVSVDYLTKPIEV 217
+V + ++E L+ R + V LPF +F+ V+ + Y+ +
Sbjct: 78 EVVLVDPSKEMLEVAREKGVKNVVEAKAE---DLPFPSGAFEAVLALGDVLSYVENKDKA 134
Query: 218 FKEMCQVLKPGGLAIVSFSNR 238
F E+ +VL P GL I + N
Sbjct: 135 FSEIRRVLVPDGLLIATVDNF 155
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
LP +D SFD V ++ ++ P KE ++LK GG IV +R
Sbjct: 95 NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-10
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 161 RIVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213
+ G+ +++ +LK+ N D+ KLPF+D S + + ++ ++ K
Sbjct: 48 KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR---KLPFKDESMSFVYSYGTIFHMRK 104
Query: 214 P--IEVFKEMCQVLKPGGLAIVSFSNR 238
E E+ +VLKPGGLA ++F
Sbjct: 105 NDVKEAIDEIKRVLKPGGLACINFLTT 131
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 7e-10
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
LPF D+SFD+IT + + + + +E+ +VLK G +V
Sbjct: 80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-10
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 241
LPFED+SFD I +++L P E K + +VLKPGG + ++ + +
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCY 149
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI---- 247
+P+E+ FD + +++L P V +++ +K G+ + S N + +
Sbjct: 87 MPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGN 146
Query: 248 ----WTSTGDADHV 257
D H+
Sbjct: 147 WTYTEYGLLDKTHI 160
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239
Y DL+ KL +SFD+ + +++ Y+ +F+ + Q L PGG + S +
Sbjct: 92 TYERADLD---KLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPI 148
Query: 240 FWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 278
+ A W + + Y A +
Sbjct: 149 YMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV 187
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
++PF D F ++T ++ + P E +VLK GG L +V S
Sbjct: 96 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-09
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
K+P DN+ D I + L++P++ +E+ +V KP LAI+ +
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK 145
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-09
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKAISIWT 249
LPF SFDV+ +++++ V E +VL+PGG L + W +
Sbjct: 88 ALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAAL---YR 144
Query: 250 STGDADHVMIVGAYFH 265
G+ + A F
Sbjct: 145 RLGEKGVLPWAQARFL 160
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-09
Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239
Y + + + E ++++V+ + +++ Y+ ++ K++ LK G I S +
Sbjct: 93 CYEQKAIE---DIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPV 149
Query: 240 FWTKAISIWTSTGDADHV-MIVGAYFHYA 267
F W + + + V YF+ +
Sbjct: 150 FTADGRQDWYTDETGNKLHWPVDRYFNES 178
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 4e-09
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 191 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 236
L F D+SFD +V ++ + KE+ +VLKPG L +V F
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSR---IIKEVFRVLKPGAYLYLVEFG 143
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-08
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNR 238
DNS D I S + V E+ ++LK G + I+ +
Sbjct: 68 PKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE 116
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-08
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 161 RIVGMGMNEEELKRNPVLT---------EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211
R+ G+ ++ ++ + + D LPFED SFD + + S+ ++
Sbjct: 86 RVTGISISRPQVNQANARATAAGLANRVTFSYADAM---DLPFEDASFDAVWALESLHHM 142
Query: 212 TKPIEVFKEMCQVLKPGGLAIVS 234
+EM +VL+PGG ++
Sbjct: 143 PDRGRALREMARVLRPGGTVAIA 165
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-08
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 161 RIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211
+I G+ + + ++ + + ++ LPF++ D+I + ++ +
Sbjct: 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD---NLPFQNEELDLIWSEGAIYNI 127
Query: 212 TKPIEVFKEMCQVLKPGGLAIVS 234
E + LK GG VS
Sbjct: 128 GFE-RGMNEWSKYLKKGGFIAVS 149
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-07
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE---VFKEMCQVLKPGGLAIVSFS 236
+VV DL+ + FD+I + +V + + L G A++ F
Sbjct: 92 RWVVGDLS---VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148
Query: 237 NRCFWT 242
W
Sbjct: 149 AGRGWV 154
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 161 RIVGMGMNEEELKRNPVLT------EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 214
G+ + + + D+ F +N+FD+I + ++ L+
Sbjct: 80 HTHGIDICSNIVNMANERVSGNNKIIFEANDIL---TKEFPENNFDLIYSRDAILALSLE 136
Query: 215 --IEVFKEMCQVLKPGGLAIVS 234
++F++ + LKP G +++
Sbjct: 137 NKNKLFQKCYKWLKPTGTLLIT 158
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-07
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 183 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 241
+++L D+S D++ + + T + +FKE+ +VL+ GG L
Sbjct: 151 IENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL 210
Query: 242 TKAISIW 248
++A
Sbjct: 211 SEAAQQD 217
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-07
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
+P D S + V + +V E +VLKPGG + +
Sbjct: 98 IPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA 144
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-07
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 161 RIVGMGMNEEELKRNPVLT---------EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211
I + + + KRN ++P EDNS+D I + + +
Sbjct: 107 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL---EIPCEDNSYDFIWSQDAFLHS 163
Query: 212 TKPIEVFKEMCQVLKPGGLAIVS 234
++VF+E +VLKP G+ ++
Sbjct: 164 PDKLKVFQECARVLKPRGVMAIT 186
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 10/48 (20%), Positives = 28/48 (58%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
L D S D + +++++ + + + F+EM ++++ G + +++F R
Sbjct: 87 NLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 5e-07
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 152 HFPPGYKQDRIVGM----GMNE---EELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITN 204
P G + G+ + E + P +E++ D ++ D +D+
Sbjct: 43 LLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT---EIELNDK-YDIAIC 95
Query: 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238
+ ++T P + ++M +K GG I +
Sbjct: 96 HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 129
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234
LPF + D+I + ++ + E + LK GG VS
Sbjct: 107 DLPFRNEELDLIWSEGAIYNIGFE-RGLNEWRKYLKKGGYLAVS 149
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 7e-07
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKA 244
++P ED S DV +S+ T + +E +VLKPGG L + S+R +
Sbjct: 108 QVPLEDESVDVAVFCLSL-MGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRT 161
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSF 235
+ + L + + S+ ++ + + ++ GG ++SF
Sbjct: 87 TFHHGTI---TDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSF 141
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 4e-06
Identities = 7/84 (8%), Positives = 16/84 (19%), Gaps = 6/84 (7%)
Query: 159 QDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213
+ + P D FD + S+ Y
Sbjct: 78 SPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS 137
Query: 214 PIEVFKEMCQVLKPGG-LAIVSFS 236
+ + + + +S
Sbjct: 138 ANALALLFKNMAAVCDHVDVAEWS 161
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 6e-06
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSFS 236
QD KL + +D++T+ Y E+++ Q LKPGG + SF
Sbjct: 173 TLHRQDAW---KLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228
Query: 237 NRCFWTKAISIWTSTGDADHVMIVGAY 263
S W H + +
Sbjct: 229 TPPPALSPDSPWDMQAIDPHDLQLQQL 255
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 9e-06
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVV-SVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 236
E++ D+ ++ F N FD +T ++ Y + ++F ++ + LKPGG+ I F
Sbjct: 91 EFLQGDVL---EIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146
Query: 237 NRCFWTK-AISIWTSTGDADHVMIV 260
+ + +W + ++I+
Sbjct: 147 CWFYGGRDGPVVWNEQKGEEKLVIM 171
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 183 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 241
+ E +D I + + Y+ K +L + I+ S W
Sbjct: 120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW 179
Query: 242 TKAI-SIWTSTGDADH 256
K + D
Sbjct: 180 DKLWKKYGSRFPQDDL 195
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 234
+Y+ D + K F + +D++ + +S+ +L E++K +LK G+ I +
Sbjct: 95 KYIEADYS---KYDF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA 147
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 167 MNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMC 222
M EE + + ++++ + N++D+I + YLT ++ FK
Sbjct: 128 MLEEAKRELAGMPVGKFILASME---TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ 184
Query: 223 QVLKPGGLAIVSFSNR 238
Q L P G +
Sbjct: 185 QALTPNGYIFFKENCS 200
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 161 RIVGM----GMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP-- 214
+ G+ M ++ P D S D I + + +LT
Sbjct: 69 TVYGIEPSREMRMIAKEKLPKEFSITEGDFL---SFEV-PTSIDTIVSTYAFHHLTDDEK 124
Query: 215 IEVFKEMCQVLKPGGLAIVS---FSNRCFWTKAISIWTSTGDADHVMIVGA-YFHYAGGY 270
+ Q+L GG + + F+++ + K + G + Y+
Sbjct: 125 NVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
Query: 271 E 271
+
Sbjct: 185 Q 185
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 191 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233
PF+ + N S Y+ ++F E + LK GG +
Sbjct: 178 DTPFDKGAVTASWNNESTMYVDLH-DLFSEHSRFLKVGGRYVT 219
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 182 VVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRC 239
VV+ + D D + V++L E+ +K ++ N
Sbjct: 85 VVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN-- 142
Query: 240 FWTKAISIWTSTGDADHVMIVGAYFH 265
T S+ D H H
Sbjct: 143 -PTSLYSLINFYIDPTHKK----PVH 163
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 6e-05
Identities = 38/298 (12%), Positives = 82/298 (27%), Gaps = 94/298 (31%)
Query: 9 LQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMT--- 65
++ R P + T + L + V K + R + +L L ++ +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 66 MAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTH 125
+ G+ G + V + + FK +F+ + +
Sbjct: 158 VLGS-GKTWVAL---------DVCLSYKVQCKMDFK-------------IFWLN---LKN 191
Query: 126 IDDPA--IAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVV 183
+ P + L K ++ P + + I + EL+R
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI------QAELRR--------- 236
Query: 184 QDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243
L + N V+ NV + K F C++L ++ T+
Sbjct: 237 --LLKSKPYE---NCLLVLLNVQN----AKAWNAFNLSCKIL-------LT-------TR 273
Query: 244 AISIWT--STGDADHVMIVGAYFHYAGGYE-------------------PPQAVDISP 280
+ S H+ + H++ P + + +P
Sbjct: 274 FKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 173 KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGL 230
+ + Y L E +S+DVI + +LT E + L+P G+
Sbjct: 124 EEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180
Query: 231 AIVS 234
++
Sbjct: 181 IVIK 184
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 192 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 240
+D+I ++ + IE+ M +L PGG ++ +
Sbjct: 110 KVPVGKDYDLICANFALLHQD-IIELLSAMRTLLVPGGALVIQTLHPWS 157
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 180 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSFS 236
++ VQD+ +L + + S++YL + F ++L GG +
Sbjct: 82 DFWVQDMR---ELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138
Query: 237 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 278
+ + T A+ +Y +A E P +V
Sbjct: 139 SPYKMETLFNGKTYATHAEQ----SSYIWFADPGEEPLSVVH 176
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 161 RIVGM----GMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216
++G M E+ + P L + V D D D + + + ++ +P
Sbjct: 81 EVLGTDNAATMIEKARQNYPHL-HFDVADAR---NFRV-DKPLDAVFSNAMLHWVKEPEA 135
Query: 217 VFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW 248
+ Q LK GG + F + +
Sbjct: 136 AIASIHQALKSGGRFVAEFGGKGNIKYILEAL 167
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 195 EDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTG 252
+++D + + ++ + +V K + + LKPGGL S+ +G
Sbjct: 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY--------------KSG 144
Query: 253 DADHVMIVGAYFHY 266
+ + + Y++Y
Sbjct: 145 EGEGRDKLARYYNY 158
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 169 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 228
++ + V V +L ++++ I ++ + +++ ++ Q LKPG
Sbjct: 68 KQLAQEKGVKITTVQSNLA---DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPG 124
Query: 229 G-LAIVSFS 236
G + F+
Sbjct: 125 GVFILEGFA 133
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQ-VLKPGGLAIVSFSNRCFWTKAISIWTSTGDA 254
+D I ++++ P+ + K + L GG + N ++ I++
Sbjct: 101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISH 160
Query: 255 DHVMIVGAYFH 265
+ + + H
Sbjct: 161 NSAVTEAEFAH 171
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 161 RIVGMGMNEEEL----KRNPVLTEYVVQDLNLN------PKLPFEDNSFDVITNVVSVDY 210
+I G+ ++ L +R L Q L + +D T + +++
Sbjct: 55 QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEH 114
Query: 211 LTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTST-GDADH 256
L + + + +P + IV+ N + K ++ DH
Sbjct: 115 LDLSRLGAFERVLFEFAQPKIV-IVTTPNIEYNVKFANLPAGKLRHKDH 162
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 7e-04
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 173 KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 232
KR P + V + +LPF D S D I + + +E+ +V+KPGG I
Sbjct: 127 KRYP-QVTFCVASSH---RLPFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVI 175
Query: 233 VS 234
+
Sbjct: 176 TA 177
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 299 | |||
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.78 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.77 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.77 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.76 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.76 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.76 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.76 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.74 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.74 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.72 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.71 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.71 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.71 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.71 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.71 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.7 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.7 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.7 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.7 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.7 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.69 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.69 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.69 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.68 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.68 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.68 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.68 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.67 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.67 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.67 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.66 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.66 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.65 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.65 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.65 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.64 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.64 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.64 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.63 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.63 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.62 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.62 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.62 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.62 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.61 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.61 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.61 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.6 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.6 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.6 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.59 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.58 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.57 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.56 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.55 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.55 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.55 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.55 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.53 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.53 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.53 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.53 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.52 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.51 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.51 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.51 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.51 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.5 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.5 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.5 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.49 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.49 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.49 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.49 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.49 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.48 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.48 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.47 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.47 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.46 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.46 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.46 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.46 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.45 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.44 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.44 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.44 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.44 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.44 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.43 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.43 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.43 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.43 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.43 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.42 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.41 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.41 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.41 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.41 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.41 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.41 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.4 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.4 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.38 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.38 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.37 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.37 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.36 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.36 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.36 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.35 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.35 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.34 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.33 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.33 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.32 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.32 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.31 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.31 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.31 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.3 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.3 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.29 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.28 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.28 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.27 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.26 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.25 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.25 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.25 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.25 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.25 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.23 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.22 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.21 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.21 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.21 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.2 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.19 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.19 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.18 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.17 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.16 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.15 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.15 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.15 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.15 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.15 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.14 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.13 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.13 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.13 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.13 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.13 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.12 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.12 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.11 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.1 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.1 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.1 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.08 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.08 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.07 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.05 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.05 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.04 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.04 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.03 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.02 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.02 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.02 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.01 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.01 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.01 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.01 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.01 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.0 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.0 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.0 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.99 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.99 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.98 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.98 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.98 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.97 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.97 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.96 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.94 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.94 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.93 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.91 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.91 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.9 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.88 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.84 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.84 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.82 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.82 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.81 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.81 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.81 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.79 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.79 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.78 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.75 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.74 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.74 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.71 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.71 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.71 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.67 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.66 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.63 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.59 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.58 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.5 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.48 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.47 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.47 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.44 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.42 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.42 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.42 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.36 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.35 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.33 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.31 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.22 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.22 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.12 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.1 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.09 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.06 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.97 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.95 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.95 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.94 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.86 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.84 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.83 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.82 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.81 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.77 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.71 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.63 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.63 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.62 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.61 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.46 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.32 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.3 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.27 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.14 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.83 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.74 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.47 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.46 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.44 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.2 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.07 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 95.96 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 95.71 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.06 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.26 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.17 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.23 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.94 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 90.82 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 89.6 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 89.55 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 88.07 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.98 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 87.61 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.13 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 85.02 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 83.47 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 83.39 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 82.99 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 81.44 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 81.41 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 80.89 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 80.89 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 80.39 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.36 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 80.31 |
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=155.57 Aligned_cols=147 Identities=7% Similarity=-0.015 Sum_probs=108.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC-
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT- 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~- 212 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..+++|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTI---TDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCG---GGGGGSCCCEEEEEEESSSTTCCT
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcc---cccccCCCCeEEEEehhhHhcCCH
Confidence 36799999999997333322236799999999999998876 488999999 78899899999999999999997
Q ss_pred -CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCch---hhhHHHHHHHhCCCCCCeeeecCCCCCCCCCe
Q 022305 213 -KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH---VMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM 288 (299)
Q Consensus 213 -d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~ 288 (299)
++..+|+++.++|||||.+++.+.+...... +.......+ ...+.+.+ ..+||+.+++...+. .|.
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~~-----~p~ 187 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEP----MYHPVATAYRWPLPELAQAL-ETAGFQVTSSHWDPR-----FPH 187 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE----ECCSSSCEEECCHHHHHHHH-HHTTEEEEEEEECTT-----SSE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhh----hhchhhhhccCCHHHHHHHH-HHCCCcEEEEEecCC-----Ccc
Confidence 8999999999999999999998766433110 111000111 12233333 569999999887765 566
Q ss_pred EEEEEEec
Q 022305 289 YVVYSRKA 296 (299)
Q Consensus 289 ~~v~arK~ 296 (299)
-.++..|.
T Consensus 188 ~~l~~~~~ 195 (203)
T 3h2b_A 188 AYLTAEAS 195 (203)
T ss_dssp EEEEEEEC
T ss_pred hhhhhhhh
Confidence 66655554
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-19 Score=160.33 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=84.0
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
....+|||+|||+|.........+.+|+|+|+|+.|++.|++ +++++++|+ +++|+++++||+|+|..++||+ +
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~---e~~~~~~~sfD~v~~~~~~h~~-~ 113 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPA---EDTGLPPASVDVAIAAQAMHWF-D 113 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCT---TCCCCCSSCEEEEEECSCCTTC-C
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhh---hhhcccCCcccEEEEeeehhHh-h
Confidence 344689999999997555444456899999999999999887 488999999 8999999999999999999887 6
Q ss_pred HHHHHHHHHhhccCCcEEEEEec
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.++++|++|+|||||.|++...
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEEC
Confidence 88999999999999998877543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-19 Score=153.07 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=110.5
Q ss_pred HHHHHHhh-hcCCceeeccCcCCccccCC--CC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGVSHFPP--GY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~~~~~~--~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~ 195 (299)
..+++.+. ....+|||+|||+|...... .. +..+++|+|+|+.|++.+++ +++++.+|+ ..++++
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~ 103 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE---NKIPLP 103 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT---TBCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc---ccCCCC
Confidence 33445442 34568999999999633322 21 45799999999999987754 378999999 888899
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCc---hhhhHHHHHHHhCCCCC
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDAD---HVMIVGAYFHYAGGYEP 272 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~aGF~~ 272 (299)
+++||+|++..+++|++++..+++++.++|||||.+++......... ...... ....+.+.+ +.+||+.
T Consensus 104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~l-~~~Gf~~ 175 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERD-------KGPPPEEVYSEWEVGLIL-EDAGIRV 175 (219)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCS-------SSCCGGGSCCHHHHHHHH-HHTTCEE
T ss_pred CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccc-------cCCchhcccCHHHHHHHH-HHCCCEE
Confidence 99999999999999999999999999999999999988754422110 000000 111223333 5699999
Q ss_pred CeeeecCCCCCCCCCeEEEEEEecC
Q 022305 273 PQAVDISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 273 v~~~~~~~~~~~~~p~~~v~arK~~ 297 (299)
+++.... ...|.++++|++
T Consensus 176 ~~~~~~~------~~~~~~~~~k~~ 194 (219)
T 3dh0_A 176 GRVVEVG------KYCFGVYAMIVK 194 (219)
T ss_dssp EEEEEET------TTEEEEEEECC-
T ss_pred EEEEeeC------CceEEEEEEecc
Confidence 9887765 367889999875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=155.83 Aligned_cols=101 Identities=13% Similarity=0.240 Sum_probs=80.7
Q ss_pred HHHhhhcCCceeeccCcCCccc--cCC--CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCC
Q 022305 131 IAALTKYYSEVFPPSNTPGVSH--FPP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~--~~~--~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~ 197 (299)
.++..+...+|||+|||+|... +.. ..++++|+|+|+|+.|++.|++ +++++++|+ .++|++
T Consensus 64 ~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~---~~~~~~-- 138 (261)
T 4gek_A 64 AERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---RDIAIE-- 138 (261)
T ss_dssp HHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT---TTCCCC--
T ss_pred HHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc---cccccc--
Confidence 3444455679999999999633 222 2357899999999999998764 378999999 788874
Q ss_pred CeeEEEecccccccCCH--HHHHHHHHhhccCCcEEEEEec
Q 022305 198 SFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.||+|+++++++|+++. ..+|++++|+|||||.+++...
T Consensus 139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 59999999999999744 5789999999999999888643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=159.55 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=84.5
Q ss_pred cCCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
...+|||+|||+|.........+. +++|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..+++|
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI---EDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCG---GGCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcch---hhCCCCCCCeEEEEEchhhhh
Confidence 346899999999963332222233 99999999999998765 478999999 788998999999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
++++.++|+++.++|||||.++++++++.
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 149 (253)
T 3g5l_A 121 IASFDDICKKVYINLKSSGSFIFSVEHPV 149 (253)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred hhhHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence 99999999999999999999999877643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=152.01 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=85.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+ +.+ +++++||+|++.++++|++|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~---~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF---EDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGC-CCSSCEEEEEEESCGGGCSS
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccH---HHc-CcCCcccEEEEhhHHHhhcC
Confidence 4689999999997443333345689999999999987765 478899998 666 56789999999999999999
Q ss_pred HHHHHHHHH-hhccCCcEEEEEecCcchHHH
Q 022305 214 PIEVFKEMC-QVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 214 ~~~~l~ei~-rvLkpGG~lii~~~~~~~~~~ 243 (299)
+..+|+++. |+|||||.+++.+++......
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~ 149 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSR 149 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHH
Confidence 999999999 999999999999988655443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=149.84 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=109.6
Q ss_pred HHHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 129 PAIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 129 ~~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
.+++.+. ....+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..++++ ++||+|+
T Consensus 36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFEVP-TSIDTIV 111 (220)
T ss_dssp HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSCCCC-SCCSEEE
T ss_pred HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhcCCC-CCeEEEE
Confidence 3444443 345799999999997333322236899999999999987765 488999999 788887 9999999
Q ss_pred ecccccccCCHHH--HHHHHHhhccCCcEEEEEecCcch---HHHHHHhhhhcC-----------CCchhhhHHHHHHHh
Q 022305 204 NVVSVDYLTKPIE--VFKEMCQVLKPGGLAIVSFSNRCF---WTKAISIWTSTG-----------DADHVMIVGAYFHYA 267 (299)
Q Consensus 204 s~~~l~~~~d~~~--~l~ei~rvLkpGG~lii~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 267 (299)
+..+++|++++.. +|+++.|+|||||.+++..++... +......+...+ .......+.+.+ +.
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 190 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF-EN 190 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH-HH
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH-HH
Confidence 9999999999877 999999999999999998665322 222222221111 000112223333 66
Q ss_pred CCCCCCeeeecCCCCCCCCCeEEEEEEecCC
Q 022305 268 GGYEPPQAVDISPNPGRSDPMYVVYSRKAST 298 (299)
Q Consensus 268 aGF~~v~~~~~~~~~~~~~p~~~v~arK~~~ 298 (299)
+||+.+.+.. . +-.+++.++|+++
T Consensus 191 aGf~v~~~~~-~------~~~w~~~~~~~~~ 214 (220)
T 3hnr_A 191 NGFHVTFTRL-N------HFVWVMEATKQLE 214 (220)
T ss_dssp TTEEEEEEEC-S------SSEEEEEEEECSC
T ss_pred CCCEEEEeec-c------ceEEEEeehhhhh
Confidence 9997554422 2 4668888888764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-19 Score=154.90 Aligned_cols=141 Identities=18% Similarity=0.289 Sum_probs=103.4
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
....+|||+|||+|.........+.+++|+|+|+.|++.++++ ++++++|+ ..+++++++||+|++..+++|
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDL---SSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBT---TBCSSCTTCEEEEEEESCTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcch---hcCCCCCCCccEEEEcChHhh
Confidence 3457999999999974333332367999999999999987653 78999999 888999999999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCch-----hhhHHHHHHHhCCCCCCeeeecCC
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH-----VMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
++++..+++++.++|||||.+++.+.+..................+ ...+.+.+ ..+||+.+++..+..
T Consensus 129 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~~ 202 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLV-KEQGFKVVDGIGVYK 202 (242)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHH-HHTTEEEEEEEEEEC
T ss_pred ccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHH-HHcCCEEEEeecccc
Confidence 9999999999999999999999987654322211111111111111 11233333 569999999887643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=145.22 Aligned_cols=104 Identities=22% Similarity=0.246 Sum_probs=88.2
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
++..+.....+|||+|||+|...... +. +++|+|+|+.|++.+++ +++++.+|+ ..+++++++||+|++.
T Consensus 29 ~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~ 102 (211)
T 2gs9_A 29 ALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWG---EALPFPGESFDVVLLF 102 (211)
T ss_dssp HHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSEEECCCT---TSCCSCSSCEEEEEEE
T ss_pred HHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEccc---ccCCCCCCcEEEEEEc
Confidence 34444445578999999999633333 45 99999999999998775 488999999 8889999999999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.+++|++++.++++++.++|||||.+++.+++..
T Consensus 103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 103 TTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp SCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred ChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999999999999999999999999887754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-19 Score=150.83 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=86.3
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~ 197 (299)
..+++.+.....+|||+|||+|....... .++.+++|+|+|+.|++.+++ +++++++|+ ..++++++
T Consensus 34 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV---HNIPIEDN 110 (219)
T ss_dssp HHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT---TBCSSCTT
T ss_pred HHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH---HHCCCCcc
Confidence 33444443223489999999996322211 156799999999999987654 378999999 88899999
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+||+|++..+++|++++..+++++.++|||||.+++....
T Consensus 111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 9999999999999999999999999999999999987544
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-19 Score=153.37 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=83.7
Q ss_pred cCCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC-----CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~-----~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
...+|||+|||+|.........+. +++|+|+|+.|++.++++ ++++.+|+ ..+++++++||+|++..+++|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADL---DKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG---GGCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh---hhccCCCCCceEEEEeccccc
Confidence 456899999999963322222244 999999999999987653 68899999 778888899999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++++..+++++.++|||||.+++.++++
T Consensus 120 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 120 VEDVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 9999999999999999999999988764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-19 Score=154.16 Aligned_cols=140 Identities=13% Similarity=0.037 Sum_probs=106.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC--CCCCCCeeEEEecccccccCC-
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL--PFEDNSFDVITNVVSVDYLTK- 213 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l--pf~~~~FD~Vis~~~l~~~~d- 213 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.++++++++.+|+ ..+ ++++++||+|+|..+++|+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~---~~~~~~~~~~~fD~i~~~~~l~~~~~~ 117 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDA---IEYLKSLPDKYLDGVMISHFVEHLDPE 117 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCH---HHHHHTSCTTCBSEEEEESCGGGSCGG
T ss_pred CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccH---HHHhhhcCCCCeeEEEECCchhhCCcH
Confidence 34689999999997433322236789999999999999998899999998 554 788999999999999999994
Q ss_pred -HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCc--hhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 214 -PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDAD--HVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 214 -~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
...+++++.|+|||||.+++.+++...+......|....... ....+...+ ..+||+.+++....+
T Consensus 118 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~aGf~~~~~~~~~~ 186 (240)
T 3dli_A 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL-EYLGFRDVKIEFFEE 186 (240)
T ss_dssp GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHH-HHHTCEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHH-HHCCCeEEEEEEecc
Confidence 499999999999999999999988766655555443222111 112233334 558999988877764
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-19 Score=153.45 Aligned_cols=100 Identities=20% Similarity=0.270 Sum_probs=83.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecc-cc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVV-SV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~-~l 208 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ ..++++ ++||+|++.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI---SNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG---GGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccc---ccCCcc-CCceEEEEcCccc
Confidence 34689999999997444333336799999999999987765 478999999 777776 8899999998 99
Q ss_pred ccc---CCHHHHHHHHHhhccCCcEEEEEecCcch
Q 022305 209 DYL---TKPIEVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 209 ~~~---~d~~~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
+|+ +++..+|+++.++|||||.+++++++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 147 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYK 147 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHH
Confidence 999 57789999999999999999998887543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-18 Score=145.44 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=108.2
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
..+|||+|||+|......... +|+|+|+.|++.+++ .++++.+|+ ..+++++++||+|++..+++|++++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVTTICFVDDPER 120 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhcCCEEEEccc---ccCCCCCCCeeEEEEcchHhhccCHHH
Confidence 579999999999744333222 999999999998876 588999999 788888899999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEEecCcch-HHHHHHhhhhc-CCCch-----hhhHHHHHHHhCCCCCCeeeecCCCC-----C-
Q 022305 217 VFKEMCQVLKPGGLAIVSFSNRCF-WTKAISIWTST-GDADH-----VMIVGAYFHYAGGYEPPQAVDISPNP-----G- 283 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~aGF~~v~~~~~~~~~-----~- 283 (299)
+++++.++|||||.+++.+++... +...+...... ....+ ...+.+.+ ..+||+.+++......+ .
T Consensus 121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~Gf~~~~~~~~~~~~p~~~~~~ 199 (219)
T 1vlm_A 121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM-RKAGFEEFKVVQTLFKHPSELSEI 199 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHH-HHTTCEEEEEEEECCSCGGGCSSC
T ss_pred HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHH-HHCCCeEEEEecccCCCCCccccc
Confidence 999999999999999998777533 22222221111 00111 12223333 56999998887763221 1
Q ss_pred -------CCCCeEEEEEEec
Q 022305 284 -------RSDPMYVVYSRKA 296 (299)
Q Consensus 284 -------~~~p~~~v~arK~ 296 (299)
..-.+++++|+|.
T Consensus 200 ~~~~~~~~~~~~~~i~a~K~ 219 (219)
T 1vlm_A 200 EPVKEGYGEGAFVVIRGTKK 219 (219)
T ss_dssp CCCEESSSSSSEEEEEEECC
T ss_pred hhhhcCCCCCeEEEEEecCC
Confidence 1124788888884
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=151.92 Aligned_cols=103 Identities=23% Similarity=0.329 Sum_probs=84.4
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCee
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
+++.+. ....+|||+|||+|...........+++|+|+|+.|++.+++ +++++++|+ +.+|+++++||
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~fD 105 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFH 105 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEE
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhCCCCCCCEE
Confidence 444442 356789999999997333222234599999999999987654 378999999 88999999999
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+|++..+++|++|+..+|+++.|+|||||.+++..
T Consensus 106 ~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 106 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999999999999999999999999999988864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-18 Score=155.28 Aligned_cols=106 Identities=14% Similarity=0.284 Sum_probs=87.4
Q ss_pred HHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-CCCCCee
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFD 200 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f~~~~FD 200 (299)
+..+.....+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ ..++ +.+++||
T Consensus 62 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD 138 (285)
T 4htf_A 62 LAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA---QDVASHLETPVD 138 (285)
T ss_dssp HHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG---GGTGGGCSSCEE
T ss_pred HHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH---HHhhhhcCCCce
Confidence 33333335689999999997443333337899999999999997764 367999999 7776 7889999
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
+|++..+++|++++..+++++.++|||||.+++.+++..
T Consensus 139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 999999999999999999999999999999999887643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=148.44 Aligned_cols=142 Identities=11% Similarity=0.059 Sum_probs=102.2
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
+.+.+. ....+|||+|||+|........++.+|+|+|+|+.|++.++++ ++++++|+ +.+++++++||+|++..
T Consensus 26 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 102 (261)
T 3ege_A 26 IINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYA---ENLALPDKSVDGVISIL 102 (261)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCT---TSCCSCTTCBSEEEEES
T ss_pred HHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECch---hhCCCCCCCEeEEEEcc
Confidence 344442 3457899999999974443333678999999999999988774 78899999 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcc----hH-----HHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeee
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC----FW-----TKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
+++|++|+..++++++|+|| ||.+++...+.. .| ........ ........+. .+ +++||+.+++..
T Consensus 103 ~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~l-~~aGF~~v~~~~ 177 (261)
T 3ege_A 103 AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDAL--RFLPLDEQIN-LL-QENTKRRVEAIP 177 (261)
T ss_dssp CGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHH--TSCCHHHHHH-HH-HHHHCSEEEEEE
T ss_pred hHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhh--hhCCCHHHHH-HH-HHcCCCceeEEE
Confidence 99999999999999999999 996666544421 11 11111111 1111122233 33 669999888777
Q ss_pred cC
Q 022305 278 IS 279 (299)
Q Consensus 278 ~~ 279 (299)
+.
T Consensus 178 ~~ 179 (261)
T 3ege_A 178 FL 179 (261)
T ss_dssp CC
T ss_pred ec
Confidence 63
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=152.33 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=85.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCC---CCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP---FEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lp---f~~~~FD~ 201 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ ++.+..+|+ ..++ +++++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW---LTLDKDVPAGDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG---GGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh---hhCccccccCCCeEE
Confidence 34689999999997433333336699999999999998753 266888888 7777 88899999
Q ss_pred EEec-ccccccCC-------HHHHHHHHHhhccCCcEEEEEecCcchH
Q 022305 202 ITNV-VSVDYLTK-------PIEVFKEMCQVLKPGGLAIVSFSNRCFW 241 (299)
Q Consensus 202 Vis~-~~l~~~~d-------~~~~l~ei~rvLkpGG~lii~~~~~~~~ 241 (299)
|+|. .+++|+++ +.+++++++++|||||.+++++++....
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYI 181 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHH
Confidence 9998 89999999 9999999999999999999998875433
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=143.57 Aligned_cols=149 Identities=19% Similarity=0.300 Sum_probs=107.1
Q ss_pred HHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCC--CCCCCCCeeEEEec
Q 022305 129 PAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK--LPFEDNSFDVITNV 205 (299)
Q Consensus 129 ~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~--lpf~~~~FD~Vis~ 205 (299)
.+++.+.....+|||+|||+|.........+.+++|+|+|+.|++.++++ .+++.+|+ .. +++++++||+|++.
T Consensus 24 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 24 NLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDI---ETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp HHHTTCCTTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSSEEEESCT---TTCCCCSCTTCEEEEEEE
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCcEEEcch---hhcCCCCCCCccCEEEEC
Confidence 33443334457899999999973322221258999999999999988875 57888998 54 67888999999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHh----hhhcC----CCchh-----hhHHHHHHHhCCCCC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI----WTSTG----DADHV-----MIVGAYFHYAGGYEP 272 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~----~~~~~----~~~~~-----~~~~~~~~~~aGF~~ 272 (299)
.+++|++++..+++++.++|||||.+++.+++...+...... |.... ...|. ..+.+.+ ..+||+.
T Consensus 101 ~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~ 179 (230)
T 3cc8_A 101 DVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMF-LKAGYSI 179 (230)
T ss_dssp SCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHH-HHTTEEE
T ss_pred ChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHH-HHcCCeE
Confidence 999999999999999999999999999999886655443322 21110 01111 1222233 5699999
Q ss_pred CeeeecCCC
Q 022305 273 PQAVDISPN 281 (299)
Q Consensus 273 v~~~~~~~~ 281 (299)
+++..+...
T Consensus 180 ~~~~~~~~~ 188 (230)
T 3cc8_A 180 SKVDRVYVD 188 (230)
T ss_dssp EEEEEEECC
T ss_pred EEEEecccC
Confidence 988887543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-18 Score=151.96 Aligned_cols=154 Identities=10% Similarity=0.111 Sum_probs=100.3
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------------------------------------C-
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------------------------------------T- 179 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------------------------------------~- 179 (299)
.+|||+|||+|.........+ .+|+|+|+|+.|++.+++. +
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 136 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 136 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEE
T ss_pred ceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhh
Confidence 579999999996444433344 4799999999999966531 1
Q ss_pred cEEEeccCCCCC-CCC---CCCCeeEEEeccccccc----CCHHHHHHHHHhhccCCcEEEEEecC-cchHHHHHHhhhh
Q 022305 180 EYVVQDLNLNPK-LPF---EDNSFDVITNVVSVDYL----TKPIEVFKEMCQVLKPGGLAIVSFSN-RCFWTKAISIWTS 250 (299)
Q Consensus 180 ~~~~~D~~~~~~-lpf---~~~~FD~Vis~~~l~~~----~d~~~~l~ei~rvLkpGG~lii~~~~-~~~~~~~~~~~~~ 250 (299)
+++++|+ .+ .|+ .+++||+|+++.++||+ ++...++++++|+|||||.|+++... ...+...-..+..
T Consensus 137 ~~~~~D~---~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~ 213 (263)
T 2a14_A 137 RVLKCDV---HLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 213 (263)
T ss_dssp EEEECCT---TSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred eEEeccc---cCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence 2788998 44 344 36799999999999996 35578999999999999999998532 1111000000000
Q ss_pred cCCCchhhhHHHHHHHhCCCCCCeeeecCCCC----CCCCCeEEEEEEecCC
Q 022305 251 TGDADHVMIVGAYFHYAGGYEPPQAVDISPNP----GRSDPMYVVYSRKAST 298 (299)
Q Consensus 251 ~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~----~~~~p~~~v~arK~~~ 298 (299)
..-....+...+ .++||+.+++....... ....++++++|||+.+
T Consensus 214 --~~~~~~~l~~~l-~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 262 (263)
T 2a14_A 214 --VALEKGEVEQAV-LDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKPG 262 (263)
T ss_dssp --CCCCHHHHHHHH-HHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC-
T ss_pred --cccCHHHHHHHH-HHCCCEEEEEeecccccccccCCCCceEEEEEEecCC
Confidence 000111223333 56999998887754221 2234788999999754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-18 Score=148.76 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=83.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ +.+++++++||+|++..+++
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA---RAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT---TSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEccc---ccCCCCCCCeeEEEECCchh
Confidence 35689999999997444333336899999999999987643 478999999 88899999999999999999
Q ss_pred ccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 210 YLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 210 ~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++|+..+++++.|+|||||.+++.++.
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQ 143 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEEecC
Confidence 9999999999999999999999887544
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=152.20 Aligned_cols=152 Identities=19% Similarity=0.134 Sum_probs=107.0
Q ss_pred hcCCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
+...+|||+|||+|..... ...++.+|+|+|+|+.|++.++++ ++++++|+ ..++++ ++||+|+
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA---WKLDTR-EGYDLLT 192 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCG---GGCCCC-SCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECch---hcCCcc-CCeEEEE
Confidence 3456899999999973333 345678999999999999877642 78999999 788887 9999999
Q ss_pred ecccccccCCHHH---HHHHHHhhccCCcEEEEEecCcchHHHHHHh-----------------hhhc-CC-C---chhh
Q 022305 204 NVVSVDYLTKPIE---VFKEMCQVLKPGGLAIVSFSNRCFWTKAISI-----------------WTST-GD-A---DHVM 258 (299)
Q Consensus 204 s~~~l~~~~d~~~---~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~-----------------~~~~-~~-~---~~~~ 258 (299)
++.+++|++++.. +++++.++|||||.+++.............. +... .. . ....
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 9999999998876 7999999999999999986432110000000 1111 11 1 1122
Q ss_pred hHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecC
Q 022305 259 IVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 259 ~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~ 297 (299)
.+.+.+ +.+||+.+++.... ...+..++|+|++
T Consensus 273 ~~~~~l-~~aGF~~v~~~~~~-----~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 273 QTRAQL-EEAGFTDLRFEDDR-----ARLFPTVIARKPA 305 (305)
T ss_dssp HHHHHH-HHTTCEEEEEECCT-----TSSSCEEEEECCC
T ss_pred HHHHHH-HHCCCEEEEEEccc-----CceeeEEEEecCC
Confidence 233333 56999998887622 2455688999974
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-18 Score=146.83 Aligned_cols=162 Identities=11% Similarity=0.075 Sum_probs=110.0
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCC---CCCC-CCeeEE
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKL---PFED-NSFDVI 202 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~l---pf~~-~~FD~V 202 (299)
+++.+. ....+|||+|||+|.........+.+++|+|+|+.|++.++++ +++...|+ ..+ ++.. ++||+|
T Consensus 44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 44 ILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASY---AQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp HHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCH---HHHHTTCSCCCCCEEEE
T ss_pred HHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhH---HhhcccccccCCCccEE
Confidence 344442 3457999999999974433333377999999999999987764 77888887 454 5444 459999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHH--HHHhh-----hhcCC---Cc--h---hhhHHHHHHHh
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK--AISIW-----TSTGD---AD--H---VMIVGAYFHYA 267 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~--~~~~~-----~~~~~---~~--~---~~~~~~~~~~~ 267 (299)
++..+++ ..++..+++++.++|||||.+++..++...... ....| ..... .. + ..-+.+.+ +.
T Consensus 121 ~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ 198 (227)
T 3e8s_A 121 CANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL-DM 198 (227)
T ss_dssp EEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH-HH
T ss_pred EECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH-HH
Confidence 9999999 889999999999999999999998876432211 01111 11110 01 1 11222233 66
Q ss_pred CCCCCCeeeecCCCCCCCCCeEEEEEEec
Q 022305 268 GGYEPPQAVDISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 268 aGF~~v~~~~~~~~~~~~~p~~~v~arK~ 296 (299)
+||+.+++............-+++++||+
T Consensus 199 aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 199 AGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp TTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred cCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 99999988774443333345688888885
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-18 Score=146.72 Aligned_cols=99 Identities=22% Similarity=0.339 Sum_probs=83.4
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
+...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..+++++++||+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA---SSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT---TSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc---cccCCCCCceeEE
Confidence 345799999999997433333337799999999999987665 257889999 8889989999999
Q ss_pred EecccccccCCHH---HHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPI---EVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~---~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++..+++|++++. .+++++.++|||||.+++...+
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999988 9999999999999999887654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=147.90 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=104.0
Q ss_pred cCCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|..... ...+..+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM---DDLPFRNEELDLIWSEG 122 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCTTCEEEEEESS
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh---hhCCCCCCCEEEEEEcC
Confidence 346899999999973322 12256799999999999987654 278999999 88999899999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecC---cchHHHHHHhhhhcC-CCchhhhHHHHHHHhCCCCCCeeeecCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RCFWTKAISIWTSTG-DADHVMIVGAYFHYAGGYEPPQAVDISPNP 282 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~ 282 (299)
+++|+ ++..+++++.++|||||.+++..+. ..........|.... .......+.+.+ +++||+.+++..++...
T Consensus 123 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~v~~~~~~~~~ 200 (267)
T 3kkz_A 123 AIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKI-HKAGYLPVATFILPENC 200 (267)
T ss_dssp CGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHH-HHTTEEEEEEEECCGGG
T ss_pred Cceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHH-HHCCCEEEEEEECCHhH
Confidence 99999 8999999999999999999887643 222333344453222 222222333333 56999999998876443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=149.86 Aligned_cols=109 Identities=13% Similarity=0.206 Sum_probs=89.9
Q ss_pred cHHHHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 127 DDPAIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 127 ~~~~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
.+.+++.+. ....+|||+|||+|........++.+|+|+|+|+.|++.+++ +++++++|+ +.+++ +++||+|
T Consensus 46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~fD~v 121 (279)
T 3ccf_A 46 GEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADA---RNFRV-DKPLDAV 121 (279)
T ss_dssp CCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCT---TTCCC-SSCEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECCh---hhCCc-CCCcCEE
Confidence 344455553 345789999999997433332267899999999999998775 489999999 78887 5789999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
++..+++|++|+..+++++.|+|||||.+++.+++..
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 9999999999999999999999999999999887643
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=146.15 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=85.8
Q ss_pred HHHHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCee
Q 022305 130 AIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 130 ~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
.++.+ .+...+|||+|||+|...........+++|+|+|+.|++.+++ +++++++|+ +.+++++++||
T Consensus 13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD 89 (239)
T 1xxl_A 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFPDDSFD 89 (239)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSCTTCEE
T ss_pred HHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc---ccCCCCCCcEE
Confidence 34444 2345789999999997333332234699999999999987654 378899999 88999999999
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|++..+++|++|+..+++++.|+|||||.+++....
T Consensus 90 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 9999999999999999999999999999998886443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=144.14 Aligned_cols=148 Identities=15% Similarity=0.078 Sum_probs=104.3
Q ss_pred CCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|....... ....+++|+|+|+.|++.++++ ++++.+|+ ..+++++++||+|++..++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh---hhcCCCCCCEEEEEEcchh
Confidence 5689999999997433222 2256999999999999877542 57889998 7888888899999999999
Q ss_pred cccCCHH--HHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCc--hhhhHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 209 DYLTKPI--EVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDAD--HVMIVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 209 ~~~~d~~--~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
+|++++. .+++++.++|||||.+++..+.... ...|....... ....+.+.+ ..+||+.+++.....-+..
T Consensus 157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~~~~~~~~ 231 (241)
T 2ex4_A 157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE----GVILDDVDSSVCRDLDVVRRII-CSAGLSLLAEERQENLPDE 231 (241)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS----SEEEETTTTEEEEBHHHHHHHH-HHTTCCEEEEEECCSCCTT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC----cceecccCCcccCCHHHHHHHH-HHcCCeEEEeeecCCCcch
Confidence 9998854 8999999999999999987543221 00111111100 122233334 5699999998887665555
Q ss_pred CCCeEEEEE
Q 022305 285 SDPMYVVYS 293 (299)
Q Consensus 285 ~~p~~~v~a 293 (299)
..|..+.+.
T Consensus 232 ~~~v~~~~l 240 (241)
T 2ex4_A 232 IYHVYSFAL 240 (241)
T ss_dssp SCEEEEEEE
T ss_pred hhhhhhhee
Confidence 556655443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=140.64 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=110.8
Q ss_pred HHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 129 PAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 129 ~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
.++..+.+...+|||+|||+|.........+.+++|+|+|+.+++.+++ +++++.+|+ ..+++++++||+|++.
T Consensus 38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~~D~i~~~ 114 (195)
T 3cgg_A 38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDL---SVDQISETDFDLIVSA 114 (195)
T ss_dssp HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCT---TTSCCCCCCEEEEEEC
T ss_pred HHHHHhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEccc---ccCCCCCCceeEEEEC
Confidence 3455555566799999999996333222236799999999999988765 378999999 7788888999999998
Q ss_pred -ccccccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC-C
Q 022305 206 -VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP-N 281 (299)
Q Consensus 206 -~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~-~ 281 (299)
.+++|+. +...+++++.++|||||.+++.+++... .....+...+ ..+||+.+++..... .
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~--------------~~~~~~~~~l-~~~Gf~~~~~~~~~~~~ 179 (195)
T 3cgg_A 115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRG--------------WVFGDFLEVA-ERVGLELENAFESWDLK 179 (195)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSS--------------CCHHHHHHHH-HHHTEEEEEEESSTTCC
T ss_pred CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC--------------cCHHHHHHHH-HHcCCEEeeeecccccC
Confidence 7888884 5589999999999999999998765321 1112223333 458899887765522 2
Q ss_pred C-CCCCCeEEEEEEec
Q 022305 282 P-GRSDPMYVVYSRKA 296 (299)
Q Consensus 282 ~-~~~~p~~~v~arK~ 296 (299)
+ ....+++++++||+
T Consensus 180 ~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 180 PFVQGSEFLVAVFTKK 195 (195)
T ss_dssp BCCTTCSEEEEEEEEC
T ss_pred cCCCCCcEEEEEEecC
Confidence 2 34578899999985
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-17 Score=142.92 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=81.4
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|. ..+....++.+++|+|+|+.|++.+++ +++++++|+ ..++++ ++||+|++..++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~l 119 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY---SKYDFE-EKYDMVVSALSI 119 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCT---TTCCCC-SCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCch---hccCCC-CCceEEEEeCcc
Confidence 34689999999996 233334457899999999999987765 378999999 888887 899999999999
Q ss_pred cccCCHH--HHHHHHHhhccCCcEEEEEecC
Q 022305 209 DYLTKPI--EVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 209 ~~~~d~~--~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|++++. .+++++.|+|||||.+++....
T Consensus 120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 120 HHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9998776 5999999999999999887644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=147.22 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=102.6
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|.... .... ..+|+|+|+|+.|++.++++ ++++++|+ ..+|+++++||+|++..
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYV-KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNLPFQNEELDLIWSEG 122 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHC-CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCSSCTTCEEEEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCCCCCCCEEEEEecC
Confidence 3589999999996332 2222 24999999999999976552 78999999 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecC---cchHHHHHHhhhhcCC-CchhhhHHHHHHHhCCCCCCeeeecCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RCFWTKAISIWTSTGD-ADHVMIVGAYFHYAGGYEPPQAVDISPNP 282 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aGF~~v~~~~~~~~~ 282 (299)
+++|+ ++..+++++.++|||||.+++..++ ..........|..... .....-+.+.+ +++||+.+++..++...
T Consensus 123 ~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~v~~~~~~~~~ 200 (257)
T 3f4k_A 123 AIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKM-ERAGYTPTAHFILPENC 200 (257)
T ss_dssp CSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHH-HHTTEEEEEEEECCGGG
T ss_pred hHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHH-HHCCCeEEEEEECChhh
Confidence 99999 8999999999999999999988643 2223333444543221 11222233333 56999999988776544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=147.30 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=99.8
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...... ...+.+|+|+|+|+.|++.+++ +++++.+|+ ..+|+++++||+|++..
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDLPFEDASFDAVWALE 137 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSCTTCEEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccCCCCCCCccEEEEec
Confidence 4568999999999632221 1126899999999999987654 378999999 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc-----chHHHHHHhhh-h--cCCCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR-----CFWTKAISIWT-S--TGDADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~-----~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
+++|++++..+|+++.|+|||||.+++..... .........+. . .........+.+.+ +.+||+.+++..+
T Consensus 138 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~~ 216 (273)
T 3bus_A 138 SLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDV-RQAELVVTSTVDI 216 (273)
T ss_dssp CTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHH-HHTTCEEEEEEEC
T ss_pred hhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHH-HHcCCeEEEEEEC
Confidence 99999999999999999999999998875431 11111222211 1 11111122333334 5699999888776
Q ss_pred C
Q 022305 279 S 279 (299)
Q Consensus 279 ~ 279 (299)
+
T Consensus 217 ~ 217 (273)
T 3bus_A 217 S 217 (273)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-17 Score=151.12 Aligned_cols=148 Identities=13% Similarity=0.152 Sum_probs=98.0
Q ss_pred CCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC--------------------------------------
Q 022305 138 YSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-------------------------------------- 178 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~-------------------------------------- 178 (299)
..+|||+|||+|...... ...+.+|+|+|+|+.|++.++++
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 151 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 151 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred CCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh
Confidence 468999999999733322 22467999999999999866541
Q ss_pred CcEEEeccCCCCC-CCC-----CCCCeeEEEecccccc----cCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhh
Q 022305 179 TEYVVQDLNLNPK-LPF-----EDNSFDVITNVVSVDY----LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW 248 (299)
Q Consensus 179 ~~~~~~D~~~~~~-lpf-----~~~~FD~Vis~~~l~~----~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~ 248 (299)
++++.+|+ .. +|+ ++++||+|+|+.+++| ++++..+|++++|+|||||.|++....... |
T Consensus 152 ~~~~~~D~---~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-------~ 221 (289)
T 2g72_A 152 KRVLPIDV---HQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-------W 221 (289)
T ss_dssp EEEECCCT---TSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-------E
T ss_pred ceEEeccc---CCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-------e
Confidence 23555688 55 554 4567999999999999 667899999999999999998886321110 1
Q ss_pred hhcCCC------chhhhHHHHHHHhCCCCCCeeeecCCC----C--CCCCCeEEEEEEec
Q 022305 249 TSTGDA------DHVMIVGAYFHYAGGYEPPQAVDISPN----P--GRSDPMYVVYSRKA 296 (299)
Q Consensus 249 ~~~~~~------~~~~~~~~~~~~~aGF~~v~~~~~~~~----~--~~~~p~~~v~arK~ 296 (299)
....+. .....+.+.+ ..+||+.+++.....+ . ...+.++.++++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~l-~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (289)
T 2g72_A 222 YLAGEARLTVVPVSEEEVREAL-VRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKV 280 (289)
T ss_dssp EEETTEEEECCCCCHHHHHHHH-HHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEEC
T ss_pred EEcCCeeeeeccCCHHHHHHHH-HHcCCeEEEeeEeeccccccccccCcceEEEEEEecc
Confidence 111111 1112233334 5699999888776532 1 23345666666664
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=146.91 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=85.4
Q ss_pred HHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCC
Q 022305 129 PAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 129 ~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~ 197 (299)
.+++.+.....+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+ ..+++ ++
T Consensus 74 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~---~~~~~-~~ 149 (299)
T 3g2m_A 74 EFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM---SAFAL-DK 149 (299)
T ss_dssp HHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT---TBCCC-SC
T ss_pred HHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch---hcCCc-CC
Confidence 3445554445699999999997544433347899999999999997764 377999999 78887 78
Q ss_pred CeeEEEec-ccccccC--CHHHHHHHHHhhccCCcEEEEEecCcch
Q 022305 198 SFDVITNV-VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 198 ~FD~Vis~-~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
+||+|++. .+++|++ +...+|+++.++|||||.+++++++...
T Consensus 150 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 150 RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 89999965 6677775 4689999999999999999999887543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-17 Score=145.49 Aligned_cols=136 Identities=13% Similarity=0.016 Sum_probs=96.4
Q ss_pred cCCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|....... ..+.+++|+|+|+.|++.+++ +++++++|+ ..+++ +++||+|+|..
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGYVA-NEKCDVAACVG 111 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTCCC-SSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhCCc-CCCCCEEEECC
Confidence 44689999999996332211 125799999999999987653 378999999 78887 88999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHHhhhhcCCC--chhhhHHHHHHHhCCCCCCeeee
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTSTGDA--DHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
+++|++++..+|+++.|+|||||.+++..+.. .........|...... .....+.+.+ .++||+.+++..
T Consensus 112 ~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~ 186 (256)
T 1nkv_A 112 ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAF-DDLGYDVVEMVL 186 (256)
T ss_dssp CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHH-HTTTBCCCEEEE
T ss_pred ChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHH-HHCCCeeEEEEe
Confidence 99999999999999999999999999876432 1112222333311100 0111122233 669999988754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=136.26 Aligned_cols=155 Identities=11% Similarity=0.043 Sum_probs=102.5
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
...+|||+|||+|.. .+....+..+++|+|+|+.|++.+++ +++++.+|+ ..+++++++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~ 105 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL---VYRDKRFSGYDA 105 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS---SSCCGGGTTCSE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc---cccccccCCCCE
Confidence 457899999999973 33333345799999999999997764 478899999 788888899999
Q ss_pred EEecccccccCCH--HHHHHHHHhhccCCcEEEEEecCcch------HHHH-HHhhhhcCCCchhhhHHH---HHHHhCC
Q 022305 202 ITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCF------WTKA-ISIWTSTGDADHVMIVGA---YFHYAGG 269 (299)
Q Consensus 202 Vis~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~---~~~~~aG 269 (299)
|++..+++|++++ .++++++.++|||||.+++ +++... .... ........... ..-+.+ .+...+|
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~G 183 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS-TPNKEYNFHYGNLFEGNLRHRDHRFEWT-RKEFQTWAVKVAEKYG 183 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEBGGGGGCCCCT-----GGGCCTTSBC-HHHHHHHHHHHHHHHT
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE-ccchhhhhhhcccCcccccccCceeeec-HHHHHHHHHHHHHHCC
Confidence 9999999999866 7999999999999995544 444322 1110 00000000001 111221 2225578
Q ss_pred CCCCeeeecCCC-CCCCCCeEEEEEEecC
Q 022305 270 YEPPQAVDISPN-PGRSDPMYVVYSRKAS 297 (299)
Q Consensus 270 F~~v~~~~~~~~-~~~~~p~~~v~arK~~ 297 (299)
|+ ++...+... +....|.=+.+.||-.
T Consensus 184 f~-v~~~~~g~~~~~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 184 YS-VRFLQIGEIDDEFGSPTQMGVFTLGA 211 (219)
T ss_dssp EE-EEEEEESCCCTTSCCSEEEEEEEECC
T ss_pred cE-EEEEecCCccccCCCCeEEEEEeccC
Confidence 96 555555433 4455677777777743
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-17 Score=149.27 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=100.0
Q ss_pred CCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC--------------------------------------
Q 022305 138 YSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV-------------------------------------- 177 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~-------------------------------------- 177 (299)
..+|||+|||+|... +...++..+|+|+|+|+.|++.|++
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 468999999999633 3334457899999999999987653
Q ss_pred ----------------------------CCcEEEeccCCCCCC-----CCCCCCeeEEEecccccccC------CHHHHH
Q 022305 178 ----------------------------LTEYVVQDLNLNPKL-----PFEDNSFDVITNVVSVDYLT------KPIEVF 218 (299)
Q Consensus 178 ----------------------------~~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l~~~~------d~~~~l 218 (299)
+++|+++|+ ... ++.+++||+|+|..+++|+. ++.++|
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~---~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNY---VLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCC---CCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEeccc---ccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 366778887 433 35788999999999998885 788999
Q ss_pred HHHHhhccCCcEEEEEecCcchHH-------HHHHhhhhcCCCchhhhHHHHHHH-hCCCCCCeeeecCC--CCCCCCCe
Q 022305 219 KEMCQVLKPGGLAIVSFSNRCFWT-------KAISIWTSTGDADHVMIVGAYFHY-AGGYEPPQAVDISP--NPGRSDPM 288 (299)
Q Consensus 219 ~ei~rvLkpGG~lii~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~aGF~~v~~~~~~~--~~~~~~p~ 288 (299)
++++++|||||.|+++..++..+. .....+....- ....+.+++.. .+||+.++++.... ..++..+.
T Consensus 204 ~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~--~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r~i 281 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQL--KPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPV 281 (292)
T ss_dssp HHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCC--CGGGHHHHHTSTTTCCCEEEEC-----------CCC
T ss_pred HHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEE--cHHHHHHHHHhcCCCceEEEEeccCCCCCCCccceE
Confidence 999999999999999865533221 11222221111 12344555543 48999999887643 23444454
Q ss_pred EEEEEEec
Q 022305 289 YVVYSRKA 296 (299)
Q Consensus 289 ~~v~arK~ 296 (299)
+ +.+|+
T Consensus 282 ~--~~~k~ 287 (292)
T 3g07_A 282 Y--LFHKA 287 (292)
T ss_dssp E--EEECC
T ss_pred E--EEEcC
Confidence 4 44554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-17 Score=147.74 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=99.8
Q ss_pred CCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|......... +.+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..+++|
T Consensus 56 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 56 NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTKEFPENNFDLIYSRDAILA 132 (266)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTCCCCTTCEEEEEEESCGGG
T ss_pred CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccCCCCCCcEEEEeHHHHHHh
Confidence 458999999999633322211 6799999999999987764 368899999 888999999999999999999
Q ss_pred c--CCHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHHhhhhc-C-CCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 211 L--TKPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTST-G-DADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 211 ~--~d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
+ +++..+++++.|+|||||.+++..+.. ..+...+..+... + .......+.+.+ ..+||+.+++..+.
T Consensus 133 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 133 LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADIL-TACNFKNVVSKDLS 207 (266)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHH-HHTTCEEEEEEECH
T ss_pred cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHH-HHcCCeEEEEEeCC
Confidence 9 899999999999999999998876432 1222222222111 1 111122333344 56999998887763
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=139.44 Aligned_cols=147 Identities=13% Similarity=0.168 Sum_probs=100.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
..+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ .+++ ++++||+|+++.+++|+
T Consensus 52 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~ 127 (216)
T 3ofk_A 52 VSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDI---LQFS-TAELFDLIVVAEVLYYL 127 (216)
T ss_dssp EEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT---TTCC-CSCCEEEEEEESCGGGS
T ss_pred CCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcch---hhCC-CCCCccEEEEccHHHhC
Confidence 3589999999997433333335799999999999987765 368999999 7777 67899999999999999
Q ss_pred CCH---HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCe
Q 022305 212 TKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM 288 (299)
Q Consensus 212 ~d~---~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~ 288 (299)
+++ .++++++.++|||||.++++++... ....|..... ...+..++. .++..++.+..... .....+
T Consensus 128 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----~~~~~~~~~~---~~~~~~~~~--~~~~~~e~~~~~~~-~~~~d~ 197 (216)
T 3ofk_A 128 EDMTQMRTAIDNMVKMLAPGGHLVFGSARDA----TCRRWGHVAG---AETVITILT--EALTEVERVQCQGQ-SADEDC 197 (216)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEECHH----HHHHTTCSCC---HHHHHHHHH--HHSEEEEEEEEECS-STTCEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEEecCCC----cchhhhhhhh---HHHHHHHHH--hhccceEEEeccCC-ccccch
Confidence 988 5679999999999999999876543 2233444222 223333343 22444443333221 123445
Q ss_pred EEEEEEecCC
Q 022305 289 YVVYSRKAST 298 (299)
Q Consensus 289 ~~v~arK~~~ 298 (299)
++...+|++.
T Consensus 198 ~l~~~~~~~~ 207 (216)
T 3ofk_A 198 LLARFRNPER 207 (216)
T ss_dssp EEEEEECCC-
T ss_pred hHHHHhCCcc
Confidence 5556666653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-17 Score=143.23 Aligned_cols=152 Identities=12% Similarity=0.036 Sum_probs=105.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC--C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--K 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~--d 213 (299)
..+|||+|||+|.........+.+++|+|+|+.|++.+++ .++++.+|+ ..++ .+++||+|++..+++|++ +
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~~~~~ 119 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLF---HQLD-AIDAYDAVWAHACLLHVPRDE 119 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCG---GGCC-CCSCEEEEEECSCGGGSCHHH
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeee---ccCC-CCCcEEEEEecCchhhcCHHH
Confidence 4689999999997433332236799999999999998877 478899999 7777 789999999999999998 8
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCC-CCCCeeeecCCCC-CCC-CCeEE
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGG-YEPPQAVDISPNP-GRS-DPMYV 290 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG-F~~v~~~~~~~~~-~~~-~p~~~ 290 (299)
+..+|+++.++|||||.+++.++....... ..+...........+.+.+ +.+| |+.+++....... .+. ..+..
T Consensus 120 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l-~~aG~f~~~~~~~~~~~~~~~~~~~wl~ 196 (211)
T 3e23_A 120 LADVLKLIWRALKPGGLFYASYKSGEGEGR--DKLARYYNYPSEEWLRARY-AEAGTWASVAVESSEGKGFDQELAQFLH 196 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCSSCEE--CTTSCEECCCCHHHHHHHH-HHHCCCSEEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCCcccc--cccchhccCCCHHHHHHHH-HhCCCcEEEEEEeccCCCCCCCCceEEE
Confidence 889999999999999999998765321100 0000000011112233334 5689 9999887765432 222 33455
Q ss_pred EEEEec
Q 022305 291 VYSRKA 296 (299)
Q Consensus 291 v~arK~ 296 (299)
++.+|+
T Consensus 197 ~~~~~~ 202 (211)
T 3e23_A 197 VSVRKP 202 (211)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 555554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-17 Score=151.66 Aligned_cols=137 Identities=16% Similarity=0.079 Sum_probs=99.3
Q ss_pred cCCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|........ .+.+++|+|+|+.|++.+++ +++++++|+ ..+|+++++||+|++..
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccCCCCCCCEeEEEecc
Confidence 346899999999963322211 15699999999999987654 378999999 88999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcc------hHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC------FWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
+++|++++..+|+++.|+|||||.+++..+... .+...+..+.. ........+.+.+ ..+||+.+++.++
T Consensus 159 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~aGf~~~~~~~~ 234 (297)
T 2o57_A 159 AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL-HDMGSLGLYRSLA-KECGLVTLRTFSR 234 (297)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTC-SSCCCHHHHHHHH-HHTTEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcC-CCCCCHHHHHHHH-HHCCCeEEEEEEC
Confidence 999999999999999999999999988764321 12222222211 1111222333334 5589998888765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=144.79 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=103.8
Q ss_pred CceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC-------------------------------------C-
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL-------------------------------------T- 179 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~-------------------------------------~- 179 (299)
.+|||+|||+|.........+. +|+|+|+|+.|++.++++ +
T Consensus 58 ~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 137 (265)
T 2i62_A 58 ELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIK 137 (265)
T ss_dssp EEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEE
T ss_pred CEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhhe
Confidence 5799999999975554444444 899999999999877431 4
Q ss_pred cEEEeccCCCCCC-CCCC---CCeeEEEeccccc----ccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhc
Q 022305 180 EYVVQDLNLNPKL-PFED---NSFDVITNVVSVD----YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTST 251 (299)
Q Consensus 180 ~~~~~D~~~~~~l-pf~~---~~FD~Vis~~~l~----~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~ 251 (299)
+++.+|+ ..+ ++++ ++||+|++..+++ +++++..+++++.|+|||||.+++....... +...
T Consensus 138 ~~~~~d~---~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~ 207 (265)
T 2i62_A 138 QVLKCDV---TQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-------YYMI 207 (265)
T ss_dssp EEEECCT---TSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-------EEEE
T ss_pred eEEEeee---ccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-------eEEc
Confidence 7888998 554 3355 8999999999999 6668899999999999999999887643211 1111
Q ss_pred CCC------chhhhHHHHHHHhCCCCCCeeeecCCC----CCCCCCeEEEEEEecCC
Q 022305 252 GDA------DHVMIVGAYFHYAGGYEPPQAVDISPN----PGRSDPMYVVYSRKAST 298 (299)
Q Consensus 252 ~~~------~~~~~~~~~~~~~aGF~~v~~~~~~~~----~~~~~p~~~v~arK~~~ 298 (299)
+.. -....+.+.+ ..+||+.+++...... ....+.+++++|||+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 263 (265)
T 2i62_A 208 GEQKFSSLPLGWETVRDAV-EEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR 263 (265)
T ss_dssp TTEEEECCCCCHHHHHHHH-HHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred CCccccccccCHHHHHHHH-HHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence 110 0111233334 4599999888776532 12234678899999753
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-17 Score=144.38 Aligned_cols=98 Identities=26% Similarity=0.384 Sum_probs=84.2
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|. ..+....++.+++|+|+|+.|++.+++ +++++.+|+ ..+++++++||+|++..
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI---FSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGCCSCTTCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc---ccCCCCCCCeeEEEEec
Confidence 44689999999996 233333457899999999999987654 378899999 78899999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++++..+++++.++|||||.+++..++
T Consensus 114 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 114 VLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 9999999999999999999999999987654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-17 Score=142.32 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=80.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecc-cc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVV-SV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~-~l 208 (299)
...+|||+|||+|......... .+++|+|+|+.|++.+++ +++++.+|+ ..++++ ++||+|++.. ++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM---RELELP-EPVDAITILCDSL 107 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCG---GGCCCS-SCEEEEEECTTGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcCh---hhcCCC-CCcCEEEEeCCch
Confidence 3479999999999733332223 799999999999987764 378999999 777776 7899999986 99
Q ss_pred ccc---CCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 209 DYL---TKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 209 ~~~---~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
+|+ .++..+++++.++|||||.++++++++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 141 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHH
Confidence 999 4567899999999999999999887654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=149.56 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCceeeccCcCCccc--cCCCC-CCCeEEEEeCCHHHHHhcCC----------------CCcEEEeccCCCCCC-----
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGY-KQDRIVGMGMNEEELKRNPV----------------LTEYVVQDLNLNPKL----- 192 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~-~~~~v~gvD~S~~ml~~a~~----------------~~~~~~~D~~~~~~l----- 192 (299)
...+|||+|||+|... +.... ++.+|+|+|+|+.|++.+++ +++++++|+ +.+
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~---~~l~~~~~ 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI---ENLATAEP 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT---TCGGGCBS
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH---HHhhhccc
Confidence 3468999999999632 22222 46799999999999987653 578999999 776
Q ss_pred -CCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc-----hHHHHHHhhhhcC-CCchhhhHHHHHH
Q 022305 193 -PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC-----FWTKAISIWTSTG-DADHVMIVGAYFH 265 (299)
Q Consensus 193 -pf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~ 265 (299)
++++++||+|+++.+++|++|+..+|+++.|+|||||.+++...... ........|.... ......-+.+.+
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll- 238 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV- 238 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH-
T ss_pred CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH-
Confidence 89999999999999999999999999999999999999988754321 1111111222211 111122333344
Q ss_pred HhCCCCCCeeeecC
Q 022305 266 YAGGYEPPQAVDIS 279 (299)
Q Consensus 266 ~~aGF~~v~~~~~~ 279 (299)
..+||+.+++....
T Consensus 239 ~~aGF~~v~~~~~~ 252 (383)
T 4fsd_A 239 AEAGFRDVRLVSVG 252 (383)
T ss_dssp HHTTCCCEEEEEEE
T ss_pred HHCCCceEEEEecc
Confidence 56999998776653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-17 Score=134.21 Aligned_cols=138 Identities=13% Similarity=0.028 Sum_probs=99.4
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
...+|||+|||+|...........+++|+|+|+.+++.+++ ++++..+| +++++++||+|++..+++|+++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d------~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP------KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG------GGSCTTCEEEEEEESCSTTCSC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC------CCCCCCceEEEEEccchhcccC
Confidence 34589999999997443332223499999999999998865 46777666 5678899999999999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCch----hhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeE
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH----VMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMY 289 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~ 289 (299)
+..+++++.|+|||||.+++......... .....+ ..-+.+.+ . ||+.+++.... ...|
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l--~-Gf~~~~~~~~~------~~~~ 153 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTG--------IGPPLSIRMDEKDYMGWF--S-NFVVEKRFNPT------PYHF 153 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCS--------SSSCGGGCCCHHHHHHHT--T-TEEEEEEECSS------TTEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccc--------cCchHhhhcCHHHHHHHH--h-CcEEEEccCCC------CceE
Confidence 99999999999999999988754432100 000011 11222233 2 99988887655 4678
Q ss_pred EEEEEecC
Q 022305 290 VVYSRKAS 297 (299)
Q Consensus 290 ~v~arK~~ 297 (299)
.++++|.+
T Consensus 154 ~l~~~~~~ 161 (170)
T 3i9f_A 154 GLVLKRKT 161 (170)
T ss_dssp EEEEEECC
T ss_pred EEEEecCC
Confidence 88888864
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-17 Score=157.12 Aligned_cols=137 Identities=10% Similarity=0.001 Sum_probs=98.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEE-----EeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYV-----VQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~-----~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.++++ .... ..+. +.+++++++||+|++.++++|
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---~~l~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATA---DDVRRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHH---HHHHHHHCCEEEEEEESCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhH---hhcccCCCCEEEEEECChHHh
Confidence 346899999999974433333467999999999999988775 3322 2333 456777899999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhh-----hHHHHHHHhCCCCCCeeeecC
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVM-----IVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~aGF~~v~~~~~~ 279 (299)
++|+..+|++++|+|||||.+++++++..........+... ..|.. .+.+.+ ..+||+.+++..++
T Consensus 184 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~l~~ll-~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 184 IPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIF--DEHFFLFSATSVQGMA-QRCGFELVDVQRLP 254 (416)
T ss_dssp CTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCS--TTCCEECCHHHHHHHH-HHTTEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhh--hhhhhcCCHHHHHHHH-HHcCCEEEEEEEcc
Confidence 99999999999999999999999988754333221111111 12222 222333 66999998887764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-17 Score=144.62 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=80.8
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecc-cccccC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVV-SVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~-~l~~~~ 212 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+ ..+++ +++||+|+|.. +++|++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDM---RDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECCh---HHCCc-cCCcCEEEEcCchhhhcC
Confidence 34789999999997444433346799999999999998766 489999999 78887 78999999998 999996
Q ss_pred ---CHHHHHHHHHhhccCCcEEEEEe
Q 022305 213 ---KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 213 ---d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+...+|+++.++|||||.++++.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 56788999999999999999974
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=140.99 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=83.0
Q ss_pred cCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|. ..+....+ +.+|+|+|+|+.|++.+++ +++++++|+ .++++ +++||+|++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~v~~~~ 97 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEIEL-NDKYDIAICHA 97 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCT---TTCCC-SSCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcch---hhcCc-CCCeeEEEECC
Confidence 34689999999997 33444445 4899999999999986654 378999999 77888 46899999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++|+..++++++|+|||||.+++..++
T Consensus 98 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999999999999999999999999988776
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.4e-17 Score=141.76 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=102.9
Q ss_pred cCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||+|......... ..+++|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..+++
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccH---HHCCCCCCCeEEEEEcchhh
Confidence 3568999999999733322211 4579999999999997764 377889999 77888889999999999999
Q ss_pred ccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCch---hhhHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 210 YLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH---VMIVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 210 ~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
|++ ++..+|+++.++|||||.+++..+..... ..+........ ...+.+.+ ..+||+.+++.....-+..
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~~~~~~~~ 244 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD----RFLVDKEDSSLTRSDIHYKRLF-NESGVRVVKEAFQEEWPTD 244 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C----CEEEETTTTEEEBCHHHHHHHH-HHHTCCEEEEEECTTCCTT
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc----cceecccCCcccCCHHHHHHHH-HHCCCEEEEeeecCCCCch
Confidence 994 58899999999999999999986421100 00111111111 12233334 5589999998877665544
Q ss_pred CCCeEEEE
Q 022305 285 SDPMYVVY 292 (299)
Q Consensus 285 ~~p~~~v~ 292 (299)
..|...++
T Consensus 245 ~~~~~~~~ 252 (254)
T 1xtp_A 245 LFPLKMYA 252 (254)
T ss_dssp SCCEEEEE
T ss_pred hheEEEEE
Confidence 55554443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-16 Score=141.68 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=103.0
Q ss_pred cCCceeeccCcC---Ccccc--CCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCC-----------C
Q 022305 137 YYSEVFPPSNTP---GVSHF--PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP-----------F 194 (299)
Q Consensus 137 ~~~~vLDiGcG~---G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lp-----------f 194 (299)
...+|||+|||+ |..+. ....++.+|+|+|+|+.|++.+++ +++++.+|+ .+.+ +
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~---~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADV---RDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCT---TCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeC---CCchhhhccchhhccC
Confidence 347899999999 85322 223467899999999999987764 378999998 4421 2
Q ss_pred CCCCeeEEEecccccccCC--HHHHHHHHHhhccCCcEEEEEecCcc---hHHHHHHhhhhcCCCchhhhHHHHHHHhCC
Q 022305 195 EDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNRC---FWTKAISIWTSTGDADHVMIVGAYFHYAGG 269 (299)
Q Consensus 195 ~~~~FD~Vis~~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG 269 (299)
+.++||+|++..++||+++ +..+|++++++|||||+|+++..... ........|.......+.+-..++-..-.|
T Consensus 154 d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l~G 233 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQFGD 233 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTTTT
T ss_pred CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHhCC
Confidence 3358999999999999987 89999999999999999998865532 222233333322111122222222222268
Q ss_pred CCCCe--eeec---CCC-C-CC--CC----CeEEEEEEecC
Q 022305 270 YEPPQ--AVDI---SPN-P-GR--SD----PMYVVYSRKAS 297 (299)
Q Consensus 270 F~~v~--~~~~---~~~-~-~~--~~----p~~~v~arK~~ 297 (299)
|+.++ ++.+ .+. + .. .+ ..|..+|||++
T Consensus 234 ~~l~~~g~~~~~~w~p~~~~~~~~~~~~~~~~~~~v~rk~~ 274 (274)
T 2qe6_A 234 FELVEPGVVYTALWRPDEPVDPDNLSPGEQLGMAGIGRKKA 274 (274)
T ss_dssp CEECTTCSEEGGGSSCSSCCCTTSCCGGGGSEEEEEEECCC
T ss_pred CeEccCcEeccccccCCCCCccccCCccceeEEEEEEecCC
Confidence 87665 2222 121 1 11 12 26999999974
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=133.25 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=82.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..+ +++++||+|++..+++|++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCT---TSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEeccc---ccC-CCCCceeEEEEechhhcCC
Confidence 34689999999997333222236799999999999998764 478999999 666 7789999999999999999
Q ss_pred CH--HHHHHHHHhhccCCcEEEEEecCc
Q 022305 213 KP--IEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 213 d~--~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++ ..+++++.++|||||.+++...+.
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 86 899999999999999998887654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-17 Score=140.58 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=77.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------------------CCcEEEeccCCCCCCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------------------~~~~~~~D~~~~~~lpf~~ 196 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.|++ +++++++|+ .++++++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~---~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF---FALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC---SSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc---ccCCccc
Confidence 45789999999997433333346799999999999986642 478999999 8888876
Q ss_pred -CCeeEEEecccccccCC--HHHHHHHHHhhccCCcEEEEE
Q 022305 197 -NSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 197 -~~FD~Vis~~~l~~~~d--~~~~l~ei~rvLkpGG~lii~ 234 (299)
++||+|++..+++|++. ...++++++|+|||||.+++.
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 89999999999999964 456999999999999974443
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-16 Score=136.54 Aligned_cols=144 Identities=15% Similarity=0.150 Sum_probs=101.1
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.+|||+|||+|........++.+|+|+|+|+.|++.+++ +++++++|+ ..++ ++++||+|++..+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV---FTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCT---TTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECch---hcCC-CCCCeeEEEEChhhh
Confidence 589999999997444444467899999999999987654 267999999 6666 456899999999999
Q ss_pred ccC--CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCC--chhhhHHHHHHHhCCCCCCeeeecCCCC--C
Q 022305 210 YLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA--DHVMIVGAYFHYAGGYEPPQAVDISPNP--G 283 (299)
Q Consensus 210 ~~~--d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aGF~~v~~~~~~~~~--~ 283 (299)
|++ ++..+++++.++|||||.+++...+.... ..+.. .....+.+.+ ..+||+.+++....... .
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~~~~~~~ 214 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDH--------VGGPPYKVDVSTFEEVL-VPIGFKAVSVEENPHAIPTR 214 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC--------CSCSSCCCCHHHHHHHH-GGGTEEEEEEEECTTCCTTT
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc--------CCCCCccCCHHHHHHHH-HHcCCeEEEEEecCCccccc
Confidence 998 89999999999999999888765432200 00000 0112233333 56899999888775432 2
Q ss_pred CCCCeEEEEEEe
Q 022305 284 RSDPMYVVYSRK 295 (299)
Q Consensus 284 ~~~p~~~v~arK 295 (299)
.....+...++.
T Consensus 215 ~g~e~~~~~~~~ 226 (235)
T 3lcc_A 215 KGKEKLGRWKKI 226 (235)
T ss_dssp TTSCEEEEEEES
T ss_pred cCHHHHhhhhhc
Confidence 223344444443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-16 Score=144.40 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=87.2
Q ss_pred CceeeccCcCCcc------ccCCCCCCCeE--EEEeCCHHHHHhcCCC---------CcEE--EeccCCCCCCC------
Q 022305 139 SEVFPPSNTPGVS------HFPPGYKQDRI--VGMGMNEEELKRNPVL---------TEYV--VQDLNLNPKLP------ 193 (299)
Q Consensus 139 ~~vLDiGcG~G~~------~~~~~~~~~~v--~gvD~S~~ml~~a~~~---------~~~~--~~D~~~~~~lp------ 193 (299)
.+|||+|||+|.. .+....++..+ +|+|+|++|++.++++ +.+. .++. +.++
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~ 130 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS---SEYQSRMLEK 130 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCH---HHHHHHHHTT
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecch---hhhhhhhccc
Confidence 4799999999942 11222245544 9999999999876542 2332 3343 3333
Q ss_pred CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc-chHHHHHHh-hhhcCCCchh-----hhHHHHHHH
Q 022305 194 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR-CFWTKAISI-WTSTGDADHV-----MIVGAYFHY 266 (299)
Q Consensus 194 f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~-~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~ 266 (299)
+++++||+|++.+++||++|+.++|++++|+|||||.+++.+.+. ..+...+.. |.......+. .-+...+ .
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 209 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML-D 209 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH-H
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHH-H
Confidence 668999999999999999999999999999999999988876553 333333322 2222111111 1222333 5
Q ss_pred hCCCCCCee
Q 022305 267 AGGYEPPQA 275 (299)
Q Consensus 267 ~aGF~~v~~ 275 (299)
.+||+.+..
T Consensus 210 ~aGf~~~~~ 218 (292)
T 2aot_A 210 NLGLKYECY 218 (292)
T ss_dssp HHTCCEEEE
T ss_pred HCCCceEEE
Confidence 689987653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-16 Score=134.02 Aligned_cols=132 Identities=11% Similarity=0.097 Sum_probs=92.0
Q ss_pred ceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 140 EVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..+++++++||+|+++....+..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL---ADFDIVADAWEGIVSIFCHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT---TTBSCCTTTCSEEEEECCCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh---hhcCCCcCCccEEEEEhhcCCHH
Confidence 99999999997333332236799999999999987765 367888999 78888889999999964322234
Q ss_pred CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhh--HHHHHHHhCCCCCCeeeecC
Q 022305 213 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMI--VGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aGF~~v~~~~~~ 279 (299)
++..+++++.++|||||.+++.+.+..... +.......+..+ ..++...-.||+.+++....
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~Gf~v~~~~~~~ 172 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-----YNTGGPKDLDLLPKLETLQSELPSLNWLIANNLE 172 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECTTTGG-----GTSCCSSSGGGCCCHHHHHHHCSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccccc-----CCCCCCCcceeecCHHHHHHHhcCceEEEEEEEE
Confidence 788999999999999999999877654322 111111111111 12222222399998877764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-16 Score=143.05 Aligned_cols=95 Identities=14% Similarity=0.213 Sum_probs=81.6
Q ss_pred hhcCCceeeccCcCCccccCCC---CCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCCCC-----
Q 022305 135 TKYYSEVFPPSNTPGVSHFPPG---YKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFED----- 196 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~~~~---~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf~~----- 196 (299)
.....+|||+|||+|....... .++.+|+|+|+|+.|++.+++ +++++++|+ +.+++++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~ 110 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS---DDFKFLGADSVD 110 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT---TCCGGGCTTTTT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH---HhCCcccccccc
Confidence 3456789999999997433332 367899999999999987643 588999999 8888877
Q ss_pred -CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 197 -NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 197 -~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
++||+|++..++||+ ++..+++++.|+|||||.+++
T Consensus 111 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 899999999999999 999999999999999998877
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-16 Score=133.57 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=78.3
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..+++ +++||+|++..++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDL---NNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCG---GGCCC-CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcch---hhCCC-CCCceEEEEcchh
Confidence 34689999999997333222236799999999999987654 478899999 77787 8899999999999
Q ss_pred cccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+|++ ++..+++++.++|||||.+++.
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9997 8899999999999999987654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=135.80 Aligned_cols=97 Identities=29% Similarity=0.372 Sum_probs=80.8
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEeccc--c
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS--V 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~--l 208 (299)
..+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..+++++++||+|+++.+ +
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECch---hcCCCCCCcEEEEEEcCchHh
Confidence 5789999999997333322234499999999999987654 478999999 778888899999999999 6
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|.+++..+++++.++|||||.+++..++
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 66668899999999999999999998776
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-16 Score=142.68 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=98.4
Q ss_pred CCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|......... +.+|+|+|+|+.|++.+++ +++++.+|+ ..+++++++||+|++..+
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDTPFDKGAVTASWNNES 194 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCTTCEEEEEEESC
T ss_pred CCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcCCCCCCCEeEEEECCc
Confidence 358999999999733322222 6799999999999987764 378999999 888999999999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcch-------HHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF-------WTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
++|+ ++..+|+++.|+|||||.+++..+.... +...+...... .......+.+.+ +++||+.+++.++.
T Consensus 195 l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~l-~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 195 TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC-NIHSRREYLRAM-ADNRLVPHTIVDLT 270 (312)
T ss_dssp GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC-CCCBHHHHHHHH-HTTTEEEEEEEECH
T ss_pred hhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC-CCCCHHHHHHHH-HHCCCEEEEEEeCC
Confidence 9999 6999999999999999998887543211 11111111111 111122333334 56999999998874
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-16 Score=136.60 Aligned_cols=100 Identities=15% Similarity=0.022 Sum_probs=77.2
Q ss_pred HHHhhhcCCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCC--CCCCCCee
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL--PFEDNSFD 200 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~l--pf~~~~FD 200 (299)
.+.+.....+|||||||.|..... ......+++|||+|+.|++.|+++ ++++.+|. +.+ ++++++||
T Consensus 54 a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~FD 130 (236)
T 3orh_A 54 AAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW---EDVAPTLPDGHFD 130 (236)
T ss_dssp HHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH---HHHGGGSCTTCEE
T ss_pred HHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehH---HhhcccccccCCc
Confidence 344455667999999999963322 223346899999999999987652 56777776 332 57889999
Q ss_pred EEE-----ecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 201 VIT-----NVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 201 ~Vi-----s~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.|+ +..+++|+.++..+++|++|+|||||.|++
T Consensus 131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 997 466788889999999999999999998876
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=128.83 Aligned_cols=127 Identities=19% Similarity=0.124 Sum_probs=96.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
...+|||+|||+|...... ..+++|+|+|+. .++++.+|+ ..+++++++||+|++..++|| .++..
T Consensus 67 ~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~-------~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~-~~~~~ 132 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI---RNPVHCFDLASL-------DPRVTVCDM---AQVPLEDESVDVAVFCLSLMG-TNIRD 132 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC---CSCEEEEESSCS-------STTEEESCT---TSCSCCTTCEEEEEEESCCCS-SCHHH
T ss_pred CCCeEEEECCcCCHHHHHh---hccEEEEeCCCC-------CceEEEecc---ccCCCCCCCEeEEEEehhccc-cCHHH
Confidence 3468999999999643332 278999999998 588999999 788999999999999999975 89999
Q ss_pred HHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEec
Q 022305 217 VFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~ 296 (299)
+++++.++|||||.+++........ ....+...+ ..+||+.++... ....+++++++|.
T Consensus 133 ~l~~~~~~L~~gG~l~i~~~~~~~~--------------~~~~~~~~l-~~~Gf~~~~~~~------~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 133 FLEEANRVLKPGGLLKVAEVSSRFE--------------DVRTFLRAV-TKLGFKIVSKDL------TNSHFFLFDFQKT 191 (215)
T ss_dssp HHHHHHHHEEEEEEEEEEECGGGCS--------------CHHHHHHHH-HHTTEEEEEEEC------CSTTCEEEEEEEC
T ss_pred HHHHHHHhCCCCeEEEEEEcCCCCC--------------CHHHHHHHH-HHCCCEEEEEec------CCCeEEEEEEEec
Confidence 9999999999999998875432110 112233344 458998776432 1245788999987
Q ss_pred CC
Q 022305 297 ST 298 (299)
Q Consensus 297 ~~ 298 (299)
+.
T Consensus 192 ~~ 193 (215)
T 2zfu_A 192 GP 193 (215)
T ss_dssp SS
T ss_pred Cc
Confidence 54
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-16 Score=138.28 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=83.6
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEeccccccc
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~ 211 (299)
...+|||+|||+|... +....++.+++|+|+|+.|++.+++ +++++.+|+ +.++ ++++||+|+++.+++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADL---ATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCT---TTCC-CSSCEEEEEEESCGGGS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECCh---hhcC-ccCCcCEEEEeCchhhC
Confidence 3468999999999632 2223357899999999999998864 589999999 7788 78899999999999999
Q ss_pred CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 212 TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 212 ~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+..+++++.++|||||.+++.+++
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 109 PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999999999999999999998765
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-16 Score=133.39 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=78.9
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
...+|||+|||+|.... ....+..+++|+|+|+.|++.+++ +++++++|+ ..+++++++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~ 105 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL---TYQDKRFHGYDA 105 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT---TSCCGGGCSCSE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc---ccccccCCCcCE
Confidence 45789999999997332 333345799999999999997754 378899998 777888889999
Q ss_pred EEecccccccCCH--HHHHHHHHhhccCCcEEEEE
Q 022305 202 ITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 202 Vis~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~ 234 (299)
|++..+++|++++ .++++++.++|||||.+++.
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999866 89999999999999966654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-16 Score=134.05 Aligned_cols=97 Identities=23% Similarity=0.292 Sum_probs=82.6
Q ss_pred CCceeeccCcCCccc-cCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSH-FPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~-~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|... ......+.+++|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..+++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI---RKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT---TSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECch---hhCCCCCCceeEEEEcChHH
Confidence 478999999999642 2223356799999999999987664 378999999 78899899999999999999
Q ss_pred cc--CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 210 YL--TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 210 ~~--~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+ +++..+++++.++|||||.+++.+.+
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99 68899999999999999999998654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-16 Score=137.81 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=83.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCC--cEEEeccCCCCCCCCCCCCeeEEEeccccccc-CC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL-TK 213 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~--~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~-~d 213 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.++++. .++++|+ ..+++++++||+|++..+++|+ ++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA---EDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCT---TSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcH---HHCCCCCCCEEEEEEcchhhhcccc
Confidence 5578999999999743333333679999999999999877642 4889999 8889989999999999877666 78
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
+..+|+++.++|||||.+++.+++..
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 99999999999999999999988743
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-16 Score=140.47 Aligned_cols=103 Identities=12% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC--------------CcEEEeccCCC---CCC--CCCCC
Q 022305 138 YSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLN---PKL--PFEDN 197 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~--------------~~~~~~D~~~~---~~l--pf~~~ 197 (299)
..+|||+|||+|.... .......+|+|+|+|+.||+.|+++ ++|.+.|+... +.+ +++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 3689999999995222 1222357999999999999988753 24667776211 011 35678
Q ss_pred CeeEEEeccccccc---CCHHHHHHHHHhhccCCcEEEEEecCcch
Q 022305 198 SFDVITNVVSVDYL---TKPIEVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 198 ~FD~Vis~~~l~~~---~d~~~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
+||+|+|..++||+ .+...+|++++|+|||||.+++++++...
T Consensus 129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 99999999999986 46689999999999999999999887543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=137.44 Aligned_cols=94 Identities=9% Similarity=0.124 Sum_probs=77.4
Q ss_pred CCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|....... ..+.+|+|+|+|+.|++.+++ +++++.+|+ ..+| ++||+|++..+
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFD---EPVDRIVSIGA 138 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCC---CCCSEEEEESC
T ss_pred cCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCC---CCeeEEEEeCc
Confidence 4689999999996332211 125699999999999987654 477888998 6665 78999999999
Q ss_pred cccc--CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 208 VDYL--TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 208 l~~~--~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++|+ +++..+|+++.|+|||||.+++..++
T Consensus 139 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 139 FEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999 68999999999999999999987655
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.1e-16 Score=139.72 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=77.2
Q ss_pred cCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|......... +.+|+|+|+|+.|++.+++ +++++.+|+ ..+ +++||+|++..
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~---~~~fD~v~~~~ 145 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEF---DEPVDRIVSLG 145 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGC---CCCCSEEEEES
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH---HHc---CCCccEEEEcc
Confidence 3468999999999633322211 4899999999999987764 367899998 555 78999999999
Q ss_pred cccccCCH---------HHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTKP---------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d~---------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++|+ ..+++++.++|||||.+++....
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99999776 79999999999999999887544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-16 Score=137.49 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=78.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcC-------------------------CCCcEEEeccCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNP-------------------------VLTEYVVQDLNLNPK 191 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~-------------------------~~~~~~~~D~~~~~~ 191 (299)
...+|||+|||+|.........+.+|+|||+|+.|++.|+ .+++++++|+ ..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~---~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI---FD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT---TT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc---cc
Confidence 4578999999999744443334789999999999998663 2367899999 88
Q ss_pred CCCCC-CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEE
Q 022305 192 LPFED-NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 192 lpf~~-~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+++++ ++||+|++..+++|++ +...+++++.|+|||||.+++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 88865 8999999999999996 4567999999999999988643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-16 Score=139.99 Aligned_cols=108 Identities=20% Similarity=0.200 Sum_probs=85.6
Q ss_pred HHHhhhcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCC-CCCCe
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF-EDNSF 199 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf-~~~~F 199 (299)
+..+.....+|||+|||+|...... .....+++|+|+|+.|++.++++ ++++++|+ ..+++ ++++|
T Consensus 58 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~f 134 (298)
T 1ri5_A 58 IRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKEF 134 (298)
T ss_dssp HHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSCE
T ss_pred HHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc---cccccCCCCCc
Confidence 3333445679999999999633222 22345999999999999877642 68899999 77887 68899
Q ss_pred eEEEecccccc----cCCHHHHHHHHHhhccCCcEEEEEecCcchH
Q 022305 200 DVITNVVSVDY----LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 241 (299)
Q Consensus 200 D~Vis~~~l~~----~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~ 241 (299)
|+|++..++|| ..++..+|+++.++|||||.+++.+++...+
T Consensus 135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 180 (298)
T 1ri5_A 135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 180 (298)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 99999999987 4578899999999999999999999886443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-16 Score=137.31 Aligned_cols=97 Identities=24% Similarity=0.452 Sum_probs=77.3
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEecc-cc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVV-SV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~-~l 208 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ ..++++ ++||+|++.. ++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFK-NEFDAVTMFFSTI 116 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCC-SCEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECCh---hhcccC-CCccEEEEcCCch
Confidence 34689999999997433333346799999999999987764 378999999 677765 6799999874 45
Q ss_pred cccC--CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 209 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 209 ~~~~--d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|++ ++..+++++.++|||||.+++++++
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 5553 5688999999999999999998876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=136.91 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=78.0
Q ss_pred cCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|......... +.+|+|+|+|+.|++.+++ +++++.+|+ ..++ ++||+|++..
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~---~~fD~v~~~~ 163 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFA---EPVDRIVSIE 163 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCC---CCCSEEEEES
T ss_pred CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHCC---CCcCEEEEeC
Confidence 3468999999999633222211 5799999999999987754 277888998 6664 7899999999
Q ss_pred ccccc--CCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 207 SVDYL--TKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 207 ~l~~~--~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+++|+ +++..+++++.++|||||.+++..++.
T Consensus 164 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 164 AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99999 688999999999999999999886653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-15 Score=130.02 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=73.8
Q ss_pred hhcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCC--CCCCCCeeEEEe
Q 022305 135 TKYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL--PFEDNSFDVITN 204 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~l--pf~~~~FD~Vis 204 (299)
.....+|||+|||+|...... .....+|+|+|+|+.|++.|++ +++++++|+ +++ ++++++||+|++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW---EDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH---HHHGGGSCTTCEEEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCH---HHhhcccCCCceEEEEE
Confidence 344568999999999633322 2233589999999999987765 267888998 777 899999999999
Q ss_pred -ccccccc-----CCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 -VVSVDYL-----TKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 -~~~l~~~-----~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+++ +. .+...++++++|+|||||.+++.
T Consensus 135 d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 135 DTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 5554 32 24457899999999999998874
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-15 Score=135.76 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=81.2
Q ss_pred HHHHHhhh-cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCee
Q 022305 129 PAIAALTK-YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 129 ~~~~~l~~-~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
.+++.+.. ...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+ ..+++ +++||
T Consensus 111 ~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~-~~~fD 186 (286)
T 3m70_A 111 DVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDI---NAANI-QENYD 186 (286)
T ss_dssp HHHHHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCG---GGCCC-CSCEE
T ss_pred HHHHHhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecc---ccccc-cCCcc
Confidence 34444422 45789999999997443333336799999999999987765 478899999 67776 78899
Q ss_pred EEEecccccccCC--HHHHHHHHHhhccCCcEEEEEe
Q 022305 201 VITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 201 ~Vis~~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+|+++.+++|+++ ...+++++.++|||||.+++..
T Consensus 187 ~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp EEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999954 5699999999999999876653
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=131.66 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=100.3
Q ss_pred cCCceeeccCcCCcc---c-c-CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC------CCCC
Q 022305 137 YYSEVFPPSNTPGVS---H-F-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP------FEDN 197 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~---~-~-~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp------f~~~ 197 (299)
-..++||+|||.++. + + ....++++|+++|.|+.||+.|++ +++|+++|+ .+++ ...+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~---~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM---LDPASILDAPELRD 154 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT---TCHHHHHTCHHHHT
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc---cChhhhhccccccc
Confidence 346899999997552 1 1 123468999999999999998865 268999999 5542 1134
Q ss_pred Cee-----EEEecccccccCC---HHHHHHHHHhhccCCcEEEEEecCcch----HHHHHHhhhhcCCCchhhhHHHHHH
Q 022305 198 SFD-----VITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNRCF----WTKAISIWTSTGDADHVMIVGAYFH 265 (299)
Q Consensus 198 ~FD-----~Vis~~~l~~~~d---~~~~l~ei~rvLkpGG~lii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (299)
.|| .|+++.+|||++| +..+++++.+.|+|||+|+++...... .......|...+..-.++-..+.-.
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~ 234 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEE 234 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHH
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 565 6889999999987 578999999999999999998654322 2333344443333222222222222
Q ss_pred HhCCCCCCe--eeecC---CCCC---C----CCCeEEEEEEec
Q 022305 266 YAGGYEPPQ--AVDIS---PNPG---R----SDPMYVVYSRKA 296 (299)
Q Consensus 266 ~~aGF~~v~--~~~~~---~~~~---~----~~p~~~v~arK~ 296 (299)
.-.||+.++ ++.++ |... . .-..|.-+|||+
T Consensus 235 ~f~GlelvePG~v~~~~Wrp~~~~~~~~~~~~~~~~~gv~rk~ 277 (277)
T 3giw_A 235 FFEGLELVEPGIVQVHKWHPDAATADGIRDEDIAMYGAVARKP 277 (277)
T ss_dssp TTTTSEECTTCSEEGGGSSCCTTTTTTCCGGGCCEEEEEEECC
T ss_pred HhCCCcccCCcEeecccccCCCCCCCCCCcccceeEEEEEecC
Confidence 225888654 22221 1111 0 112699999996
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-15 Score=127.04 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=70.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCC---CCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf---~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||. +++|+|+.|++.+++ +++++++|+ +++++ ++++||+|+|+.++||
T Consensus 13 g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~---~~~~~~~~~~~~fD~V~~~~~l~~ 75 (176)
T 2ld4_A 13 GQFVAVVWDKS--------------SPVEALKGLVDKLQALTGNEGRVSVENI---KQLLQSAHKESSFDIILSGLVPGS 75 (176)
T ss_dssp TSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTTTSEEEEEEG---GGGGGGCCCSSCEEEEEECCSTTC
T ss_pred CCEEEEecCCc--------------eeeeCCHHHHHHHHHhcccCcEEEEech---hcCccccCCCCCEeEEEECChhhh
Confidence 35677777763 239999999997765 378999999 78877 8899999999999999
Q ss_pred c-CCHHHHHHHHHhhccCCcEEEEEec
Q 022305 211 L-TKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 211 ~-~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+ +++.++|++++|+|||||.+++..+
T Consensus 76 ~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 76 TTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp CCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 9 9999999999999999999999644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-15 Score=127.80 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred hcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
....+|||+|||+|.........+ .+++|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSCCSCSSCEEEEEEESHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcCCCCCCcccEEEECcch
Confidence 345789999999997333222122 389999999999987654 478999999 7888888999999999888
Q ss_pred cccC---------------CHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 209 DYLT---------------KPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 209 ~~~~---------------d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
+++. ++..+++++.++|||||.+++..++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 7764 668999999999999999998877643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-15 Score=130.05 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=98.6
Q ss_pred hcCCceeeccCcCCccc--cCCC-CCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~-~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
+...+|||+|||+|... ++.. -+.++|+|+|+|+.|++.+++ ++..+.+|....+..++..+++|+|++.
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d- 154 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD- 154 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC-
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe-
Confidence 45578999999999733 3322 256899999999999975432 4677888874434556778899999875
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
+.|..++..++.+++|+|||||.+++.+..+.. .+.... ...+.-..+.+ +++||+.++..++.|-+ .
T Consensus 155 -~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~------d~~~p~-~~~~~~ev~~L-~~~GF~l~e~i~L~pf~---~ 222 (233)
T 4df3_A 155 -VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI------DVTTEP-SEVYKREIKTL-MDGGLEIKDVVHLDPFD---R 222 (233)
T ss_dssp -CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH------HHHTCC-CHHHHHHHHHH-HHTTCCEEEEEECTTTS---T
T ss_pred -ccCChhHHHHHHHHHHhccCCCEEEEEEecccC------CCCCCh-HHHHHHHHHHH-HHCCCEEEEEEccCCCC---C
Confidence 456678889999999999999999887644321 111111 11111111122 56999999988876533 2
Q ss_pred CeEEEEEE
Q 022305 287 PMYVVYSR 294 (299)
Q Consensus 287 p~~~v~ar 294 (299)
..+.|+++
T Consensus 223 ~H~lv~~~ 230 (233)
T 4df3_A 223 DHAMIYAV 230 (233)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEE
Confidence 45666665
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=133.18 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=100.9
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
....+|||+|||+|. ..+....++.+++++|+| .|++.+++ +++++.+|+ .+.+++++ ||+|++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~-~D~v~~ 238 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSA---FEVDYGND-YDLVLL 238 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCT---TTSCCCSC-EEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccc---ccCCCCCC-CcEEEE
Confidence 345789999999996 233334467899999999 99987664 378999999 66677655 999999
Q ss_pred cccccccCCH--HHHHHHHHhhccCCcEEEEEecCcc------hHHHHHHhhhh----cCCCchhhhHHHHHHHhCCCCC
Q 022305 205 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRC------FWTKAISIWTS----TGDADHVMIVGAYFHYAGGYEP 272 (299)
Q Consensus 205 ~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~aGF~~ 272 (299)
.+++||+++. .++++++.++|||||.+++...... .....+..+.. ........-+.+.+ +++||+.
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll-~~aGf~~ 317 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMF-SNAGFSH 317 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHH-HHTTCSE
T ss_pred cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHH-HHCCCCe
Confidence 9999999654 7999999999999997776543311 11222222111 11112222333444 5699999
Q ss_pred CeeeecCCCCCCCCCeEEEEEEec
Q 022305 273 PQAVDISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 273 v~~~~~~~~~~~~~p~~~v~arK~ 296 (299)
+++..+. .++.+++++++
T Consensus 318 ~~~~~~~------~~~~~i~~~~~ 335 (335)
T 2r3s_A 318 SQLHSLP------TTQQQVIVAYK 335 (335)
T ss_dssp EEEECCT------TSSSEEEEEEC
T ss_pred eeEEECC------CCceeEEEecC
Confidence 9886653 24456667654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-15 Score=134.22 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=80.3
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------------CCcEEEeccCCCCCCC----CC-
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPKLP----FE- 195 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------------~~~~~~~D~~~~~~lp----f~- 195 (299)
...+|||+|||+|...... ..+..+++|+|+|+.|++.+++ +++++++|+ +.++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~ 110 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS---SKELLIDKFRD 110 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT---TTSCSTTTCSS
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc---cccchhhhccc
Confidence 4578999999999633211 1346799999999999987654 367899999 6665 53
Q ss_pred -CCCeeEEEeccccccc-C---CHHHHHHHHHhhccCCcEEEEEecCcch
Q 022305 196 -DNSFDVITNVVSVDYL-T---KPIEVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 196 -~~~FD~Vis~~~l~~~-~---d~~~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
+++||+|+|..++||+ + ++..+|+++.++|||||.+++++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~ 160 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE 160 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH
Confidence 4599999999999998 4 4579999999999999999999887543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-15 Score=128.49 Aligned_cols=146 Identities=12% Similarity=0.188 Sum_probs=95.2
Q ss_pred HHHHHHh-hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHh----cCC--------CCcEEEeccCCCCCC
Q 022305 128 DPAIAAL-TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKR----NPV--------LTEYVVQDLNLNPKL 192 (299)
Q Consensus 128 ~~~~~~l-~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~----a~~--------~~~~~~~D~~~~~~l 192 (299)
...++.+ .+...+|||+|||+|. ..+....++.+|+|+|+|+.|++. +++ +++++++|+ +++
T Consensus 17 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~---~~l 93 (218)
T 3mq2_A 17 DAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA---ERL 93 (218)
T ss_dssp HHHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS---TTC
T ss_pred HHHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch---hhC
Confidence 3344444 3345689999999996 333444557899999999998875 222 478999999 889
Q ss_pred CCCCCCeeEEEec---ccc--cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--
Q 022305 193 PFEDNSFDVITNV---VSV--DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH-- 265 (299)
Q Consensus 193 pf~~~~FD~Vis~---~~l--~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 265 (299)
|+++++ |.|+.. ..+ +|++++..+++++.|+|||||.+++++....+..... .......... ....+.+.
T Consensus 94 ~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~ 170 (218)
T 3mq2_A 94 PPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVP-EVGEHPEPTP-DSADEWLAPR 170 (218)
T ss_dssp CSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG-GGTTCCCCCH-HHHHHHHHHH
T ss_pred CCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccccccc-ccccCCccch-HHHHHHHHHH
Confidence 988776 776633 333 3788999999999999999999999765432221111 1111111111 12222122
Q ss_pred -HhCCCCCCeeeecC
Q 022305 266 -YAGGYEPPQAVDIS 279 (299)
Q Consensus 266 -~~aGF~~v~~~~~~ 279 (299)
..+||+..++..+.
T Consensus 171 l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 171 YAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCCceeeeccc
Confidence 56999988776653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=130.09 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=99.4
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|. ..+...+++.+++++|+ +.|++.+++ +++++.+|+ . .+++. +||+|++.+
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~-~~~p~-~~D~v~~~~ 243 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSF---F-DPLPA-GAGGYVLSA 243 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---T-SCCCC-SCSEEEEES
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCC---C-CCCCC-CCcEEEEeh
Confidence 4689999999996 33444557789999999 999987763 488999998 4 34544 799999999
Q ss_pred cccccCCH--HHHHHHHHhhccCCcEEEEEecCcch-----HHHHHHhhhhcCC-CchhhhHHHHHHHhCCCCCCeeeec
Q 022305 207 SVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCF-----WTKAISIWTSTGD-ADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 207 ~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
++||++|+ .++|++++++|||||+++|....... +... ..+...+. .....-+.+.+ +++||+.+++..+
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~-~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~~ 321 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDL-RMLTYFGGKERSLAELGELA-AQAGLAVRAAHPI 321 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHH-HHHHHHSCCCCCHHHHHHHH-HHTTEEEEEEEEC
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHH-HHHhhCCCCCCCHHHHHHHH-HHCCCEEEEEEEC
Confidence 99999986 88999999999999988876432111 1111 11111121 12222333444 5699999988765
Q ss_pred CCCCCCCCCeEEEEEEe
Q 022305 279 SPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 279 ~~~~~~~~p~~~v~arK 295 (299)
. . +.++.+||
T Consensus 322 ~------~-~~vie~r~ 331 (332)
T 3i53_A 322 S------Y-VSIVEMTA 331 (332)
T ss_dssp S------S-SEEEEEEE
T ss_pred C------C-cEEEEEee
Confidence 3 1 66777765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=125.23 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=93.9
Q ss_pred CCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCC----CCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPK----LPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~----lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|... +....+..+|+|+|+|+.|++.+++ ++.++.+|+ .. +++. ++||+|+
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~~~~~-~~~D~v~-- 148 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQEYANIV-EKVDVIY-- 148 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGGGTTTS-CCEEEEE--
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCcccccccC-ccEEEEE--
Confidence 468999999999733 2323235799999999999975432 477889998 66 6666 7899999
Q ss_pred ccccccCCH---HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHH---HHHHhCCCCCCeeeecC
Q 022305 206 VSVDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA---YFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 206 ~~l~~~~d~---~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~aGF~~v~~~~~~ 279 (299)
++++++ ..+++++.++|||||.+++.+...+. ......+ .+..+ .+ ..+||+.+++.++.
T Consensus 149 ---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---------~~~~~~~-~~~~~~l~~l-~~~Gf~~~~~~~~~ 214 (230)
T 1fbn_A 149 ---EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI---------DVTKDPK-EIFKEQKEIL-EAGGFKIVDEVDIE 214 (230)
T ss_dssp ---ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT---------CSSSCHH-HHHHHHHHHH-HHHTEEEEEEEECT
T ss_pred ---EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCC---------CCCCCHH-HhhHHHHHHH-HHCCCEEEEEEccC
Confidence 456666 78899999999999999886432110 0000001 11212 22 45799988887765
Q ss_pred CCCCCCCCeEEEEEEecC
Q 022305 280 PNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 280 ~~~~~~~p~~~v~arK~~ 297 (299)
+. ....++++++|..
T Consensus 215 ~~---~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 215 PF---EKDHVMFVGIWEG 229 (230)
T ss_dssp TT---STTEEEEEEEECC
T ss_pred CC---ccceEEEEEEeCC
Confidence 43 2467899999864
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=126.66 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=97.1
Q ss_pred cCCceeeccCcCCccccCCC--CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC---CCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHFPPG--YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE---DNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~--~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~---~~~FD~Vi 203 (299)
...+|||+|||+|...+... .++.+|+|+|+|+.|++.+++ +++++++|+ +++++. +++||+|+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HHHTTCTTTTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccH---HHhcccccccCCccEEE
Confidence 34689999999997444333 567899999999999987654 378899998 667654 67899999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCC
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~ 283 (299)
|.. +.++..+++++.++|||||.+++...... .. ......+.+ +..||...++..+.. +.
T Consensus 147 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~--~~------------~~~~~~~~l-~~~g~~~~~~~~~~~-~~ 206 (240)
T 1xdz_A 147 ARA----VARLSVLSELCLPLVKKNGLFVALKAASA--EE------------ELNAGKKAI-TTLGGELENIHSFKL-PI 206 (240)
T ss_dssp EEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C--HH------------HHHHHHHHH-HHTTEEEEEEEEEEC-TT
T ss_pred Eec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc--hH------------HHHHHHHHH-HHcCCeEeEEEEEec-CC
Confidence 976 47899999999999999999988633211 00 011122233 458898877765542 22
Q ss_pred CCCCeEEEEEEecC
Q 022305 284 RSDPMYVVYSRKAS 297 (299)
Q Consensus 284 ~~~p~~~v~arK~~ 297 (299)
.....++++++|.+
T Consensus 207 ~~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 207 EESDRNIMVIRKIK 220 (240)
T ss_dssp TCCEEEEEEEEECS
T ss_pred CCCceEEEEEEecC
Confidence 33456777777754
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=130.30 Aligned_cols=119 Identities=16% Similarity=0.276 Sum_probs=84.3
Q ss_pred cccccCcchhhccccHHHHHHhhhcCCceeeccCcCCcc----c--cCCCCC----CCeEEEEeCCHHHHHhcCCC----
Q 022305 113 DSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS----H--FPPGYK----QDRIVGMGMNEEELKRNPVL---- 178 (299)
Q Consensus 113 ~~~~y~~~~~~~~l~~~~~~~l~~~~~~vLDiGcG~G~~----~--~~~~~~----~~~v~gvD~S~~ml~~a~~~---- 178 (299)
.+.|+..|.....+.+.++.+ +...+|||+|||+|.- . +....+ +.+|+|+|+|+.||+.|++.
T Consensus 83 ~t~FfRd~~~f~~l~~~llp~--~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~ 160 (274)
T 1af7_A 83 LTAFFREAHHFPILAEHARRR--HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRL 160 (274)
T ss_dssp CCCTTTTTTHHHHHHHHHHHS--CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEG
T ss_pred CccccCChHHHHHHHHHccCC--CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCch
Confidence 344666554444443333322 1235899999999961 1 111111 35999999999999977542
Q ss_pred -----------------------------------CcEEEeccCCCCCCCCC-CCCeeEEEecccccccCCH--HHHHHH
Q 022305 179 -----------------------------------TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTKP--IEVFKE 220 (299)
Q Consensus 179 -----------------------------------~~~~~~D~~~~~~lpf~-~~~FD~Vis~~~l~~~~d~--~~~l~e 220 (299)
+.|.++|+ ...|++ ++.||+|+|.++++|+++. .+++++
T Consensus 161 ~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl---~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~ 237 (274)
T 1af7_A 161 SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNL---LEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRR 237 (274)
T ss_dssp GGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCT---TCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEeccc---CCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHH
Confidence 56777888 565665 5789999999999999766 789999
Q ss_pred HHhhccCCcEEEEEec
Q 022305 221 MCQVLKPGGLAIVSFS 236 (299)
Q Consensus 221 i~rvLkpGG~lii~~~ 236 (299)
++++|||||+++++..
T Consensus 238 ~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 238 FVPLLKPDGLLFAGHS 253 (274)
T ss_dssp HGGGEEEEEEEEECTT
T ss_pred HHHHhCCCcEEEEEec
Confidence 9999999999998643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=121.95 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=71.4
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC-CCCCCeeEEEecc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP-FEDNSFDVITNVV 206 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~ 206 (299)
+...+|||+|||+|.........+.+|+|+|+|+.|++.|++ ++++++.|. +.++ +.+++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH---ENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG---GGGGGTCCSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH---HHHHhhccCCcCEEEEeC
Confidence 345789999999997443333337899999999999997764 367788776 5543 4578899999873
Q ss_pred -cccc--------cCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 -SVDY--------LTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 -~l~~--------~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+++ ..+...+++++.|+|||||.+++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2322 13456789999999999999888643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-15 Score=128.51 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=76.8
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCC-CCCeeEEEec
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFE-DNSFDVITNV 205 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~-~~~FD~Vis~ 205 (299)
++..+.....+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+. +.+|++ +++||+|+++
T Consensus 41 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 41 WLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGK--GELPAGLGAPFGLIVSR 118 (226)
T ss_dssp HHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSC--SSCCTTCCCCEEEEEEE
T ss_pred HHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchh--hccCCcCCCCEEEEEeC
Confidence 344444556799999999997433333336899999999999998865 4899999984 467888 8999999997
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.++..+++++.++|||||.++
T Consensus 119 ------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 ------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ------SCCSGGGGGHHHHEEEEEEEE
T ss_pred ------CCHHHHHHHHHHHcCCCcEEE
Confidence 578899999999999999988
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-14 Score=122.13 Aligned_cols=138 Identities=12% Similarity=0.027 Sum_probs=97.2
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|.... ....+..+++|+|+|+.|++.+++ +++++.+|+ .......++||+|++..
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i~~~~ 116 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA---PEGLDDLPDPDRVFIGG 116 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT---TTTCTTSCCCSEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh---hhhhhcCCCCCEEEECC
Confidence 45689999999996322 333356899999999999998764 377888888 44433447799999998
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCC---C-
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN---P- 282 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~---~- 282 (299)
+++ ++..+++++.++|||||.+++........ ..+.+.+ ...|| .+++..+... +
T Consensus 117 ~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----------------~~~~~~l-~~~g~-~~~~~~~~~~~~~~~ 175 (204)
T 3e05_A 117 SGG---MLEEIIDAVDRRLKSEGVIVLNAVTLDTL----------------TKAVEFL-EDHGY-MVEVACVNVAKTKGL 175 (204)
T ss_dssp CTT---CHHHHHHHHHHHCCTTCEEEEEECBHHHH----------------HHHHHHH-HHTTC-EEEEEEEEEEEEC--
T ss_pred CCc---CHHHHHHHHHHhcCCCeEEEEEecccccH----------------HHHHHHH-HHCCC-ceeEEEEEeecceEc
Confidence 775 88999999999999999999976543211 1222333 45788 5655554221 1
Q ss_pred ------CCCCCeEEEEEEecCC
Q 022305 283 ------GRSDPMYVVYSRKAST 298 (299)
Q Consensus 283 ------~~~~p~~~v~arK~~~ 298 (299)
....|.+++.++|...
T Consensus 176 ~~~~~~~~~~Pv~i~~~~~~~~ 197 (204)
T 3e05_A 176 TEYKMFESHNPVYIITAWKSDE 197 (204)
T ss_dssp -CCCBCEECCCEEEEEEECC--
T ss_pred cceEEeccCCCeEEEEEEcCCC
Confidence 1257999999999754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-15 Score=128.42 Aligned_cols=98 Identities=10% Similarity=-0.064 Sum_probs=77.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCC-----CCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFED-----NSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~-----~~FD~Vis~~ 206 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+ ..+++.. ..||+|++..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDG---LVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCT---TCHHHHHHHHHHHCSCEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcc---cccccccccccccCccEEEEcc
Confidence 34689999999996333222233489999999999997754 478999999 6655432 3499999999
Q ss_pred cccccC--CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++ ++..+++++.++|||||.+++....
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999998 8899999999999999986665433
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=131.27 Aligned_cols=146 Identities=8% Similarity=-0.002 Sum_probs=102.7
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|. ..+....++.+++++|+ +.|++.+++ +++++.+|+ .+.++++. |+|++.
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~--D~v~~~ 263 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYPEA--DAVLFC 263 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCT---TTSCCCCC--SEEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcc---ccCCCCCC--CEEEEe
Confidence 45689999999996 33334456789999999 999987653 378999999 66676654 999999
Q ss_pred ccccccCC--HHHHHHHHHhhccCCcEEEEEe-cCc----chHHHHHHhhhhc--CCC----chhhhHHHHHHHhCCCCC
Q 022305 206 VSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF-SNR----CFWTKAISIWTST--GDA----DHVMIVGAYFHYAGGYEP 272 (299)
Q Consensus 206 ~~l~~~~d--~~~~l~ei~rvLkpGG~lii~~-~~~----~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~aGF~~ 272 (299)
.++||+++ ..++|++++++|||||.++|.. ..+ ..+......+... +.. ....-+.+.+ +++||+.
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll-~~aGf~~ 342 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL-ESLGYKD 342 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHH-HHHTCEE
T ss_pred chhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHH-HHCCCce
Confidence 99999987 7899999999999999886653 211 1122222221111 111 2233444555 4589999
Q ss_pred CeeeecCCCCCCCCCeEEEEEEec
Q 022305 273 PQAVDISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 273 v~~~~~~~~~~~~~p~~~v~arK~ 296 (299)
+++..+. +..+++++|+
T Consensus 343 v~~~~~~-------~~~vi~a~kp 359 (359)
T 1x19_A 343 VTMVRKY-------DHLLVQAVKP 359 (359)
T ss_dssp EEEEEET-------TEEEEEEECC
T ss_pred EEEEecC-------CceEEEEeCC
Confidence 8887654 5788899985
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=132.00 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-CCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f~~~~FD~Vis~ 205 (299)
..+|||+|||+|. ..+...+++.+++++|+ +.+++.+++ +++++.+|+ .+.+ +.++.||+|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNL---LDARNFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCT---TCGGGGTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCc---ccCcccCCCCccEEEEe
Confidence 5799999999996 33444556789999999 888876653 378999998 5554 245669999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEEecC---c---chHHHHHHhhh--h--cCCCchhhhHHHHHHHhCCCCCC
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN---R---CFWTKAISIWT--S--TGDADHVMIVGAYFHYAGGYEPP 273 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~---~---~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~aGF~~v 273 (299)
+++||+++. .++|++++++|||||.+++.... . ......+..+. . .+......-+.+.+ +++||+.+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~ 334 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV-RDAGLAVG 334 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH-HHTTCEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH-HHCCCcee
Confidence 999999876 89999999999999988775321 1 11122222111 1 11122222333444 56999988
Q ss_pred eeeecCCCCCCCCCeEEEEEEecCCC
Q 022305 274 QAVDISPNPGRSDPMYVVYSRKASTA 299 (299)
Q Consensus 274 ~~~~~~~~~~~~~p~~~v~arK~~~~ 299 (299)
+.. ..++.+++++|++++
T Consensus 335 ~~~--------~g~~~l~~a~kp~~e 352 (352)
T 3mcz_A 335 ERS--------IGRYTLLIGQRSSGE 352 (352)
T ss_dssp EEE--------ETTEEEEEEECCCC-
T ss_pred eec--------cCceEEEEEecCCCC
Confidence 742 246899999999763
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-14 Score=116.05 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=97.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP-- 214 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~-- 214 (299)
...+|||+|||+|.........+ +|+|+|+|+.|++. ..+++++++|+ .+ ++++++||+|+++..+++.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-~~~~~~~~~d~---~~-~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-HRGGNLVRADL---LC-SINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-CSSSCEEECST---TT-TBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-ccCCeEEECCh---hh-hcccCCCCEEEECCCCccCCcccc
Confidence 34689999999997444433344 99999999999999 55699999999 55 6667899999999888876554
Q ss_pred -------HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCC
Q 022305 215 -------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 287 (299)
Q Consensus 215 -------~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p 287 (299)
..+++++.+.| |||.+++..+.... ...+.+++ +.+||+.+++..... ..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~----------------~~~l~~~l-~~~gf~~~~~~~~~~---~~e~ 155 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR----------------PKEVLARL-EERGYGTRILKVRKI---LGET 155 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC----------------HHHHHHHH-HHTTCEEEEEEEEEC---SSSE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC----------------HHHHHHHH-HHCCCcEEEEEeecc---CCce
Confidence 68899999999 99999887643221 11223334 458899877766542 3456
Q ss_pred eEEEEEEec
Q 022305 288 MYVVYSRKA 296 (299)
Q Consensus 288 ~~~v~arK~ 296 (299)
.|.+..+|.
T Consensus 156 ~~~~~~~~~ 164 (170)
T 3q87_B 156 VYIIKGEKS 164 (170)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecc
Confidence 677666664
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=133.30 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=101.3
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|. ..+....++.+++++|+ +.|++.+++ +++++.+|+ .+ +++.+ ||+|++.
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~~-~D~v~~~ 255 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF---FK-PLPVT-ADVVLLS 255 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCSCC-EEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCC---CC-cCCCC-CCEEEEe
Confidence 35789999999996 33333446789999999 999987654 478999998 43 34333 9999999
Q ss_pred ccccccCCHH--HHHHHHHhhccCCcEEEEEec--C-c----chHHHHHHhhh---hcCCCchhhhHHHHHHHhCCCCCC
Q 022305 206 VSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFS--N-R----CFWTKAISIWT---STGDADHVMIVGAYFHYAGGYEPP 273 (299)
Q Consensus 206 ~~l~~~~d~~--~~l~ei~rvLkpGG~lii~~~--~-~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~aGF~~v 273 (299)
+++||+++.. ++++++.++|||||.++|... . + ..+......+. ..+......-+.+.+ .++||+.+
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~aGf~~~ 334 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA-GSAGLALA 334 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH-HTTTEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHH-HHCCCceE
Confidence 9999998875 899999999999998877544 1 1 11111122111 111111222333344 56999999
Q ss_pred eeeecCCCCCCCCCeEEEEEEecC
Q 022305 274 QAVDISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 274 ~~~~~~~~~~~~~p~~~v~arK~~ 297 (299)
++..+... ....+..++.++|++
T Consensus 335 ~~~~~~~~-~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 335 SERTSGST-TLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEECCS-SCSSCEEEEEEEECC
T ss_pred EEEECCCC-cccCCcEEEEEEECc
Confidence 88776421 112234788888874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=122.05 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=93.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCC-CCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFED-NSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~-~~FD~Vis~~ 206 (299)
...+|||+|||+|...........+++|+|+|+.+++.+++ ++++..+|+ .. ++++ ++||+|++..
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA---PE-ALCKIPDIDIAVVGG 108 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH---HH-HHTTSCCEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCH---HH-hcccCCCCCEEEECC
Confidence 44689999999997333222223899999999999987654 467788887 43 2333 5899999988
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC----
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 282 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~---- 282 (299)
+++ +...+++++.++|||||.+++...+.... ....+.+ ...|| .+++..+....
T Consensus 109 ~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~~~----------------~~~~~~l-~~~g~-~~~~~~~~~~~~~~~ 167 (192)
T 1l3i_A 109 SGG---ELQEILRIIKDKLKPGGRIIVTAILLETK----------------FEAMECL-RDLGF-DVNITELNIARGRAL 167 (192)
T ss_dssp CTT---CHHHHHHHHHHTEEEEEEEEEEECBHHHH----------------HHHHHHH-HHTTC-CCEEEEEEEEEEEEE
T ss_pred chH---HHHHHHHHHHHhcCCCcEEEEEecCcchH----------------HHHHHHH-HHCCC-ceEEEEEEcccCeEe
Confidence 765 46899999999999999999876643211 1122333 44789 56665553211
Q ss_pred ------CCCCCeEEEEEEecC
Q 022305 283 ------GRSDPMYVVYSRKAS 297 (299)
Q Consensus 283 ------~~~~p~~~v~arK~~ 297 (299)
....|.|+++++|+.
T Consensus 168 ~~~~~~~~~~p~~l~~~~k~~ 188 (192)
T 1l3i_A 168 DRGTMMVSRNPVALIYTGVSH 188 (192)
T ss_dssp TTEEEEEECCCEEEEECCC--
T ss_pred cCceeecCCCCEEEEEEeccc
Confidence 125788999999974
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=142.93 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=84.0
Q ss_pred cCCceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCC--------------CCcEEEeccCCCCCCCCCCCCe
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPV--------------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~--------------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
...+|||+|||+|........ +..+|+|+|+|+.|++.|++ +++++++|+ ..+++++++|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa---~dLp~~d~sF 797 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI---LEFDSRLHDV 797 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT---TSCCTTSCSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch---HhCCcccCCe
Confidence 457899999999974333222 23799999999999998754 378999999 8899999999
Q ss_pred eEEEecccccccCCHH--HHHHHHHhhccCCcEEEEEecCcch
Q 022305 200 DVITNVVSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~--~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
|+|++..+++|++++. .+++++.|+|||| .+++++++..+
T Consensus 798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 9999999999999766 5999999999999 89999888643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-14 Score=131.13 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=100.3
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC--CCCCCCeeEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL--PFEDNSFDVI 202 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l--pf~~~~FD~V 202 (299)
....+|||+|||+|. ..+...+++.+++++|+ +.|++.+++ +++++.+|+ ... |++ ++||+|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~p-~~~D~v 252 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANL---LDRDVPFP-TGFDAV 252 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCC---CSSSCCCC-CCCSEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccc---cccCCCCC-CCcCEE
Confidence 456799999999996 33444557889999999 999987654 378999998 554 465 789999
Q ss_pred EecccccccCCH--HHHHHHHHhhccCCcEEEEEecC--cc-hHHH-----HHHh----hhhcCC-CchhhhHHHHHHHh
Q 022305 203 TNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN--RC-FWTK-----AISI----WTSTGD-ADHVMIVGAYFHYA 267 (299)
Q Consensus 203 is~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~--~~-~~~~-----~~~~----~~~~~~-~~~~~~~~~~~~~~ 267 (299)
++..++|++++. .++|++++++|||||.++|.... .. .... .... ....+. .....-+.+.+ ++
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~ 331 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCI-EN 331 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHH-HT
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHH-HH
Confidence 999999999866 57899999999999988775432 11 1111 0111 111111 11122333344 56
Q ss_pred CCCCCCeeeecCCCCCCCCCeEEEEEEecC
Q 022305 268 GGYEPPQAVDISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 268 aGF~~v~~~~~~~~~~~~~p~~~v~arK~~ 297 (299)
+||+.+++..... .+.-++.++|.+
T Consensus 332 AGf~~v~~~~~~g-----~~~svi~~~~~~ 356 (363)
T 3dp7_A 332 AGLEVEEIQDNIG-----LGHSILQCRLKE 356 (363)
T ss_dssp TTEEESCCCCCBT-----TTBEEEEEEEC-
T ss_pred cCCeEEEEEeCCC-----CCceEEEEeecc
Confidence 9999888754432 235666666654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=129.85 Aligned_cols=99 Identities=20% Similarity=0.315 Sum_probs=79.6
Q ss_pred hcCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
....+|||+|||+|... +....++.+++|+|+|+.|++.+++ ++.+..+|+ ..+++++++||+|++..+..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~~~- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRLPFSDTSMDAIIRIYAPC- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSCSBCTTCEEEEEEESCCC-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhCCCCCCceeEEEEeCChh-
Confidence 34578999999999632 2333357899999999999998875 378999999 88899999999999977633
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
.++++.|+|||||.+++.+++...+.+.
T Consensus 160 ------~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 187 (269)
T 1p91_A 160 ------KAEELARVVKPGGWVITATPGPRHLMEL 187 (269)
T ss_dssp ------CHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred ------hHHHHHHhcCCCcEEEEEEcCHHHHHHH
Confidence 4799999999999999988876554443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-14 Score=121.31 Aligned_cols=139 Identities=10% Similarity=0.039 Sum_probs=88.8
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHH----hcC--CCCcEEEeccCCCCC----CCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNPK----LPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~----~a~--~~~~~~~~D~~~~~~----lpf~~~~FD~Vis 204 (299)
...+|||+|||+|.. .+....+..+|+|+|+|+.|++ .++ .++.++.+|+ .. .++. ++||+|++
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~---~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGGTTTTC-CCEEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC---CCchhhcccc-cceeEEEE
Confidence 346899999999963 2222223579999999998653 333 2467778887 44 2454 78999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHH--HHhCCCCCCeeeecCCCC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF--HYAGGYEPPQAVDISPNP 282 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~aGF~~v~~~~~~~~~ 282 (299)
.. .++ .+...++++++|+|||||.+++.+...+ ..+. . .....+.... .+++ |+..+..+..|-
T Consensus 133 ~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~------~~~~--~--~~~~~~~~~~~~l~~~-f~~~~~~~~~p~- 198 (210)
T 1nt2_A 133 DI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARS------IDST--A--EPEEVFKSVLKEMEGD-FKIVKHGSLMPY- 198 (210)
T ss_dssp CC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHH------HCTT--S--CHHHHHHHHHHHHHTT-SEEEEEEECTTT-
T ss_pred ec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCC------cccc--C--CHHHHHHHHHHHHHhh-cEEeeeecCCCC-
Confidence 73 222 3344569999999999999999864321 0000 0 1111221111 1446 999888887542
Q ss_pred CCCCCeEEEEEEe
Q 022305 283 GRSDPMYVVYSRK 295 (299)
Q Consensus 283 ~~~~p~~~v~arK 295 (299)
....|.++++|
T Consensus 199 --~~~h~~~~~~~ 209 (210)
T 1nt2_A 199 --HRDHIFIHAYR 209 (210)
T ss_dssp --CTTEEEEEEEE
T ss_pred --CCCcEEEEEEc
Confidence 23678999987
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-15 Score=128.18 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=78.6
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEec-cccccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNV-VSVDYL 211 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~-~~l~~~ 211 (299)
....+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++.+|+ ..+++ +++||+|+|. .+++|+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDM---RDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCT---TTCCC-SSCEEEEEECTTGGGGC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCH---HHccc-CCCCcEEEEcCchHhhc
Confidence 345789999999996333222223489999999999998875 388999999 77777 7889999964 599999
Q ss_pred C---CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 212 T---KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 212 ~---d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ++..+|+++.++|||||.++++..+
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 5 4578999999999999999998644
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-14 Score=118.92 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=96.6
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCCCCCCC
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNS 198 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lpf~~~~ 198 (299)
+++.+. +...+|||+|||+|.........+.+++|+|+|+.|++.++++ ++++.+|+ .. ++++++
T Consensus 44 l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~ 119 (194)
T 1dus_A 44 LVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE-NVKDRK 119 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT-TCTTSC
T ss_pred HHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hc-ccccCC
Confidence 344442 2446899999999973332222278999999999999876542 67888888 44 345778
Q ss_pred eeEEEecccccc-cCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeee
Q 022305 199 FDVITNVVSVDY-LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 199 FD~Vis~~~l~~-~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
||+|+++..++| ..+...+++++.++|||||.+++..++..... .+.+.+.+ . |..+++..
T Consensus 120 ~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~----------------~~~~~l~~-~-~~~~~~~~ 181 (194)
T 1dus_A 120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAK----------------SLAKYMKD-V-FGNVETVT 181 (194)
T ss_dssp EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHH----------------HHHHHHHH-H-HSCCEEEE
T ss_pred ceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChH----------------HHHHHHHH-H-hcceEEEe
Confidence 999999988887 45778999999999999999999877643221 12223332 2 55565544
Q ss_pred cCCCCCCCCCeEEEEEEe
Q 022305 278 ISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 278 ~~~~~~~~~p~~~v~arK 295 (299)
.. ..++++.++|
T Consensus 182 ~~------~~~~~~~~~k 193 (194)
T 1dus_A 182 IK------GGYRVLKSKK 193 (194)
T ss_dssp EE------TTEEEEEEEC
T ss_pred cC------CcEEEEEEee
Confidence 22 4678888887
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=127.46 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=100.7
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+|||+|||+|. ..+...+++.+++++|+ +.|++.+++ +++++.+|+ .+ +++++ |+|++.+++||+++
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~p~~--D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDM---FD-GVPKG--DAIFIKWICHDWSD 276 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCCC--SEEEEESCGGGBCH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCC---CC-CCCCC--CEEEEechhhcCCH
Confidence 4689999999996 34445567889999999 999998876 488999998 54 66654 99999999999986
Q ss_pred H--HHHHHHHHhhccCCcEEEEEecC-c----chHH----HHHHhhh----hcCCCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 214 P--IEVFKEMCQVLKPGGLAIVSFSN-R----CFWT----KAISIWT----STGDADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 214 ~--~~~l~ei~rvLkpGG~lii~~~~-~----~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
. .++|++++++|||||.++|.... + .... ....... ..+......-+.+.+ +++||+.+++..+
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll-~~AGF~~v~~~~~ 355 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALA-MASGFRGFKVASC 355 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHH-HHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHH-HHCCCeeeEEEEe
Confidence 5 47899999999999988775322 1 1111 1111111 112222222334444 5699999998776
Q ss_pred CCCCCCCCCeEEEEEEec
Q 022305 279 SPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 279 ~~~~~~~~p~~~v~arK~ 296 (299)
. .+..++.++|+
T Consensus 356 ~------~~~~vie~~k~ 367 (368)
T 3reo_A 356 A------FNTYVMEFLKT 367 (368)
T ss_dssp E------TTEEEEEEECC
T ss_pred C------CCcEEEEEEeC
Confidence 5 34667777764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-14 Score=131.03 Aligned_cols=154 Identities=10% Similarity=0.076 Sum_probs=101.5
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|. ..+....+..+++++|+ +.|++.+++ +++++.+|+ .+ +++. .||+|++.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~-~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF---FE-PLPR-KADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCSS-CEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC---CC-CCCC-CccEEEEc
Confidence 35689999999996 33333446789999999 999987654 478999998 33 3333 39999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEEecC--cc----hHHHHHHhhh---hcCCCchhhhHHHHHHHhCCCCCCe
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN--RC----FWTKAISIWT---STGDADHVMIVGAYFHYAGGYEPPQ 274 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~--~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~aGF~~v~ 274 (299)
+++||+++. .++++++.++|||||.+++.... +. .+......+. ..+.......+.+.+ +++||+.++
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~ 335 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLA-ASAGLVVEE 335 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHH-HHTTEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHH-HHCCCeEEE
Confidence 999999877 58999999999999988876433 11 1222222221 111111222333444 569999998
Q ss_pred eeecCCCCCCCCCeEEEEEEecCC
Q 022305 275 AVDISPNPGRSDPMYVVYSRKAST 298 (299)
Q Consensus 275 ~~~~~~~~~~~~p~~~v~arK~~~ 298 (299)
+..+... +......++.++|+++
T Consensus 336 ~~~~~~~-~~~~~~~~i~~~~~~~ 358 (360)
T 1tw3_A 336 VRQLPSP-TIPYDLSLLVLAPAAT 358 (360)
T ss_dssp EEEEECS-SSSCEEEEEEEEEC--
T ss_pred EEeCCCC-cccCccEEEEEEeCCC
Confidence 8776421 0112257888998765
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=128.63 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=100.8
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|. ..+...+++.+++++|+ +.+++.+++ +++++.+|+ . .+++. .||+|++.
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~---~-~~~p~-~~D~v~~~ 275 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDF---F-ETIPD-GADVYLIK 275 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---T-TCCCS-SCSEEEEE
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCC---C-CCCCC-CceEEEhh
Confidence 34689999999996 33344557789999999 999987763 488999998 4 45555 79999999
Q ss_pred ccccccCCHH--HHHHHHHhhccCCcEEEEEecC--c--chHHHHHHh--hhhcCC-CchhhhHHHHHHHhCCCCCCeee
Q 022305 206 VSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFSN--R--CFWTKAISI--WTSTGD-ADHVMIVGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 206 ~~l~~~~d~~--~~l~ei~rvLkpGG~lii~~~~--~--~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~aGF~~v~~~ 276 (299)
+++||++++. ++|++++++|||||.++|.... . ......... +...+. .....-+.+.+ +++||+.+++.
T Consensus 276 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll-~~aGf~~~~~~ 354 (369)
T 3gwz_A 276 HVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALL-EKSGLRVERSL 354 (369)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHH-HTTTEEEEEEE
T ss_pred hhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHH-HHCCCeEEEEE
Confidence 9999998876 7999999999999988775322 1 111111111 111122 12222333344 66999999886
Q ss_pred ecCCCCCCCCCeEEEEEEe
Q 022305 277 DISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 277 ~~~~~~~~~~p~~~v~arK 295 (299)
... ..++-++.++|
T Consensus 355 ~~~-----~~~~svie~~~ 368 (369)
T 3gwz_A 355 PCG-----AGPVRIVEIRR 368 (369)
T ss_dssp ECS-----SSSEEEEEEEE
T ss_pred ECC-----CCCcEEEEEEe
Confidence 642 14567777776
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=126.56 Aligned_cols=145 Identities=13% Similarity=0.070 Sum_probs=99.5
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+|||+|||+|. ..+....+..+++++|+ +.|++.+++ +++++.+|+ .. ++++ ||+|++.+++||++|
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~~~--~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDM---FA-SVPQ--GDAMILKAVCHNWSD 282 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCC--EEEEEEESSGGGSCH
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCc---cc-CCCC--CCEEEEecccccCCH
Confidence 4689999999996 33444456789999999 999998876 488999998 55 5554 999999999999998
Q ss_pred HH--HHHHHHHhhccCCcEEEEEe---cCcch------HHHHHHhh---hhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 214 PI--EVFKEMCQVLKPGGLAIVSF---SNRCF------WTKAISIW---TSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 214 ~~--~~l~ei~rvLkpGG~lii~~---~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
+. ++|++++++|||||.++|.. +.... .......+ ...+......-+.+.+ +++||+.+++....
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~~~ 361 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLS-KLSGFSKFQVACRA 361 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH-HHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHH-HHCCCceEEEEEcC
Confidence 87 99999999999999888762 22111 11112221 1112222222333344 56999999887754
Q ss_pred CCCCCCCCeEEEEEEe
Q 022305 280 PNPGRSDPMYVVYSRK 295 (299)
Q Consensus 280 ~~~~~~~p~~~v~arK 295 (299)
+ .++.++.++|
T Consensus 362 ~-----~~~~vie~~~ 372 (372)
T 1fp1_D 362 F-----NSLGVMEFYK 372 (372)
T ss_dssp T-----TTEEEEEEEC
T ss_pred C-----CCeEEEEEeC
Confidence 2 1235665554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=130.12 Aligned_cols=145 Identities=12% Similarity=0.090 Sum_probs=99.9
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
.+|||+|||+|. ..+....++.+++++|+ +.|++.+++ +++++.+|+ .+ +++ ++||+|++.++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~-~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM---LQ-EVP-SNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT---TT-CCC-SSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC---CC-CCC-CCCCEEEEchh
Confidence 699999999996 33333446789999999 999987654 378999998 44 454 67999999999
Q ss_pred ccccCCHH--HHHHHHHhhccCCcEEEEEecC---c--chHHHHHHh--hh-hcCCCchhhhHHHHHHHhCCCCCCeeee
Q 022305 208 VDYLTKPI--EVFKEMCQVLKPGGLAIVSFSN---R--CFWTKAISI--WT-STGDADHVMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 208 l~~~~d~~--~~l~ei~rvLkpGG~lii~~~~---~--~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~aGF~~v~~~~ 277 (299)
+||+++.. +++++++++|||||.+++.... . ......+.. +. ..+.......+.+.+ +++||+.+++..
T Consensus 243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~ 321 (334)
T 2ip2_A 243 IGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLL-GRGGFAVERIVD 321 (334)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHH-HHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHH-HHCCCceeEEEE
Confidence 99998776 9999999999999988876432 1 111111111 11 112222223334444 568999988876
Q ss_pred cCCCCCCCCCeEEEEEEec
Q 022305 278 ISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 278 ~~~~~~~~~p~~~v~arK~ 296 (299)
.. .+..++.++|.
T Consensus 322 ~~------~~~~~i~~~~~ 334 (334)
T 2ip2_A 322 LP------METRMIVAARA 334 (334)
T ss_dssp ET------TTEEEEEEEEC
T ss_pred CC------CCCEEEEEEeC
Confidence 42 24677888773
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-14 Score=123.56 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=93.0
Q ss_pred CCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHH----hcC--CCCcEEEeccCCCCC---CCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNPK---LPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~----~a~--~~~~~~~~D~~~~~~---lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|.... .... +..+|+|+|+|+.|++ .++ .+++++.+|+ .. +++.+++||+|++.
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~---~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDA---RHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCT---TCGGGGGGGCCCEEEEEEC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEccc---CChhhhcccCCcEEEEEEc
Confidence 4689999999997322 2222 3579999999977544 443 3578899998 54 56667899999996
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--HhCCCCCCeeeecCCCCC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~aGF~~v~~~~~~~~~~ 283 (299)
.. .......++.++.++|||||.+++++.... .. ........+.+... .++||+.+++..+.+-+
T Consensus 155 ~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~---------~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~- 221 (233)
T 2ipx_A 155 VA--QPDQTRIVALNAHTFLRNGGHFVISIKANC---------ID-STASAEAVFASEVKKMQQENMKPQEQLTLEPYE- 221 (233)
T ss_dssp CC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHH---------HC-SSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-
T ss_pred CC--CccHHHHHHHHHHHHcCCCeEEEEEEcccc---------cc-cCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-
Confidence 54 222335568899999999999999755311 00 00111111222122 56899998877776543
Q ss_pred CCCCeEEEEEEec
Q 022305 284 RSDPMYVVYSRKA 296 (299)
Q Consensus 284 ~~~p~~~v~arK~ 296 (299)
...+++++++.
T Consensus 222 --~~~~~v~~~~~ 232 (233)
T 2ipx_A 222 --RDHAVVVGVYR 232 (233)
T ss_dssp --SSEEEEEEEEC
T ss_pred --CCcEEEEEEeC
Confidence 46788888875
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-14 Score=129.35 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=97.0
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|.... ... .++.+|+|+|+|+.+++.+++ +++++.+|+ .. ++++++||+|++
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~-~~~~~~fD~Vi~ 185 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---AD-FISDQMYDAVIA 185 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TT-CCCSCCEEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---hc-cCcCCCccEEEE
Confidence 34689999999996332 222 346899999999999986543 367888888 44 666789999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC--
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP-- 282 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~-- 282 (299)
+++++..+++++.++|||||.+++..++...... ..+.+ ...||..+++.+.....
T Consensus 186 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------~~~~l-~~~Gf~~~~~~~~~~~~~~ 243 (275)
T 1yb2_A 186 -----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEK----------------TVLSL-SASGMHHLETVELMKRRIL 243 (275)
T ss_dssp -----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHH----------------HHHHS-GGGTEEEEEEEEEEECCCC
T ss_pred -----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH----------------HHHHH-HHCCCeEEEEEEEecceeE
Confidence 6788899999999999999999998765421111 11222 34678877776642211
Q ss_pred -----------CCCCCeEEEEEEecCC
Q 022305 283 -----------GRSDPMYVVYSRKAST 298 (299)
Q Consensus 283 -----------~~~~p~~~v~arK~~~ 298 (299)
....+.|++.|||++.
T Consensus 244 ~~~~~~rp~~~~~~~~~~li~ark~~~ 270 (275)
T 1yb2_A 244 VREGATRPASDDLTHTAFITFAIKKSG 270 (275)
T ss_dssp CCTTCCCCGGGGSCEEEEEEEEEECCS
T ss_pred ecCCccccccccCCCcEEEEEEEehhc
Confidence 1235779999999875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-13 Score=124.15 Aligned_cols=144 Identities=12% Similarity=0.086 Sum_probs=99.2
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+|||+|||+|. ..+...+++.+++++|+ +.|++.+++ +++++.+|+ .+ |++++ |+|++.+++|++++
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~---~~-~~p~~--D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDM---FK-EVPSG--DTILMKWILHDWSD 274 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCCC--SEEEEESCGGGSCH
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCc---CC-CCCCC--CEEEehHHhccCCH
Confidence 4689999999996 44445567889999999 999998876 489999998 55 66654 99999999999975
Q ss_pred H--HHHHHHHHhhccCCcEEEEEecC---cc--h-HH---HHHH--hh-hhcCCC-chhhhHHHHHHHhCCCCCCeeeec
Q 022305 214 P--IEVFKEMCQVLKPGGLAIVSFSN---RC--F-WT---KAIS--IW-TSTGDA-DHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 214 ~--~~~l~ei~rvLkpGG~lii~~~~---~~--~-~~---~~~~--~~-~~~~~~-~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
. .++|++++++|||||.++|.... .. . .. .... .. ...+.. ....-+.+.+ +++||+.+++..+
T Consensus 275 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll-~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 275 QHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALA-RGAGFTGVKSTYI 353 (364)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHH-HHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHH-HHCCCceEEEEEc
Confidence 4 58999999999999988775322 10 1 10 1111 11 111222 2222334444 5699999998776
Q ss_pred CCCCCCCCCeEEEEEEe
Q 022305 279 SPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 279 ~~~~~~~~p~~~v~arK 295 (299)
.. +..++.+.|
T Consensus 354 ~~------~~~vie~~k 364 (364)
T 3p9c_A 354 YA------NAWAIEFTK 364 (364)
T ss_dssp ET------TEEEEEEEC
T ss_pred CC------ceEEEEEeC
Confidence 52 455665554
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=120.42 Aligned_cols=134 Identities=9% Similarity=-0.013 Sum_probs=91.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++.+|+ .+.......||+|++..+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PAALADLPLPEAVFIGGG 131 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TGGGTTSCCCSEEEECSC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hhhcccCCCCCEEEECCc
Confidence 44689999999997433222227899999999999987654 367888998 553223457999998875
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC-----
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP----- 282 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~----- 282 (299)
+ ++. +++++.++|||||.+++.........+ ..+++.. .||+..++.-....+
T Consensus 132 ~----~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~----------------~~~~l~~-~g~~i~~i~~~~~~~~~~~~ 189 (204)
T 3njr_A 132 G----SQA-LYDRLWEWLAPGTRIVANAVTLESETL----------------LTQLHAR-HGGQLLRIDIAQAEPLGRMR 189 (204)
T ss_dssp C----CHH-HHHHHHHHSCTTCEEEEEECSHHHHHH----------------HHHHHHH-HCSEEEEEEEEEEEEETTEE
T ss_pred c----cHH-HHHHHHHhcCCCcEEEEEecCcccHHH----------------HHHHHHh-CCCcEEEEEeecccccCccc
Confidence 4 566 999999999999999998765432222 2223322 456554433221111
Q ss_pred --CCCCCeEEEEEEe
Q 022305 283 --GRSDPMYVVYSRK 295 (299)
Q Consensus 283 --~~~~p~~~v~arK 295 (299)
....|.+++.++|
T Consensus 190 ~~~~~~Pv~i~~~~~ 204 (204)
T 3njr_A 190 GWSASRPQLQWSGQR 204 (204)
T ss_dssp EECCCCCEEEEEEEC
T ss_pred eeecCCCEEEEEecC
Confidence 3467999999887
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-14 Score=121.08 Aligned_cols=130 Identities=10% Similarity=0.095 Sum_probs=92.4
Q ss_pred hcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 136 KYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
+...+|||+|||+|...... ..+..+++|+|+|+.|++.++++ ++++.+|+ .. +.+++||+|+++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~--~~~~~fD~i~~~~ 133 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSL---LA--DVDGKFDLIVANI 133 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST---TT--TCCSCEEEEEEES
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc---cc--cCCCCceEEEECC
Confidence 34578999999999633222 23446999999999999877653 78888888 44 3468999999998
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
.++++ ..+++++.++|||||.+++...... ....+.+.+ ..+||+.+++... +
T Consensus 134 ~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~-~~~Gf~~~~~~~~-------~ 186 (205)
T 3grz_A 134 LAEIL---LDLIPQLDSHLNEDGQVIFSGIDYL----------------QLPKIEQAL-AENSFQIDLKMRA-------G 186 (205)
T ss_dssp CHHHH---HHHGGGSGGGEEEEEEEEEEEEEGG----------------GHHHHHHHH-HHTTEEEEEEEEE-------T
T ss_pred cHHHH---HHHHHHHHHhcCCCCEEEEEecCcc----------------cHHHHHHHH-HHcCCceEEeecc-------C
Confidence 88764 7889999999999999988643222 112233334 4588998776542 3
Q ss_pred CeEEEEEEecC
Q 022305 287 PMYVVYSRKAS 297 (299)
Q Consensus 287 p~~~v~arK~~ 297 (299)
.++.++.+++.
T Consensus 187 ~w~~~~~~~~~ 197 (205)
T 3grz_A 187 RWIGLAISRKH 197 (205)
T ss_dssp TEEEEEEEECC
T ss_pred CEEEEEEeccc
Confidence 56666666653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=125.80 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=76.2
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+|||+|||+|. ..+...+++.+++++|+ +.|++.+++ .++++.+|+ .. ++++ ||+|++.+++||++|
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDM---FT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCT---TT-CCCC--CSEEEEESCGGGSCH
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccc---cC-CCCC--ccEEEeehhhccCCH
Confidence 4789999999996 33344456789999999 999999876 488899998 44 4543 999999999999998
Q ss_pred HH--HHHHHHHhhccC---CcEEEEEe
Q 022305 214 PI--EVFKEMCQVLKP---GGLAIVSF 235 (299)
Q Consensus 214 ~~--~~l~ei~rvLkp---GG~lii~~ 235 (299)
+. ++|++++++||| ||.++|..
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 87 999999999999 99887764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-14 Score=128.21 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=76.9
Q ss_pred hcCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHH------HHHhcCC---------CCcEEEec-cCCCCCCCCCC
Q 022305 136 KYYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEE------ELKRNPV---------LTEYVVQD-LNLNPKLPFED 196 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~------ml~~a~~---------~~~~~~~D-~~~~~~lpf~~ 196 (299)
+...+|||+|||+|.... .... +..+|+|+|+|+. |++.+++ +++++.+| .. ...+|+++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~ 120 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS-DDLGPIAD 120 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT-TCCGGGTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh-hccCCCCC
Confidence 345689999999996322 2221 3479999999997 8876543 36788887 20 15678889
Q ss_pred CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 197 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++||+|++..+++|++++..+++.+.++++|||.+++...
T Consensus 121 ~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp CCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999999999999999877777777788999888653
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-13 Score=123.00 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=103.2
Q ss_pred cHHHHHHhhh---cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC
Q 022305 127 DDPAIAALTK---YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP 193 (299)
Q Consensus 127 ~~~~~~~l~~---~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp 193 (299)
+..++..+.. ...+|||+|||+|...+.. .....+|+|+|+++.|++.+++ +++++++|+ .+++
T Consensus 36 d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~---~~~~ 112 (259)
T 3lpm_A 36 DAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL---KKIT 112 (259)
T ss_dssp HHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG---GGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcH---HHhh
Confidence 3444555533 4578999999999733322 2223499999999999997765 267888998 5554
Q ss_pred --CCCCCeeEEEeccccccc--------------------CCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhc
Q 022305 194 --FEDNSFDVITNVVSVDYL--------------------TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTST 251 (299)
Q Consensus 194 --f~~~~FD~Vis~~~l~~~--------------------~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~ 251 (299)
+++++||+|+++-.+... .+...+++++.++|||||.+++..+...
T Consensus 113 ~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------ 180 (259)
T 3lpm_A 113 DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER------------ 180 (259)
T ss_dssp GTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT------------
T ss_pred hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH------------
Confidence 567899999997443222 1346799999999999999988654321
Q ss_pred CCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecC
Q 022305 252 GDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 252 ~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~ 297 (299)
..-+...+ ...||....+..+.+.++......++.++|.+
T Consensus 181 -----~~~~~~~l-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~ 220 (259)
T 3lpm_A 181 -----LLDIIDIM-RKYRLEPKRIQFVHPRSDREANTVLVEGIKDG 220 (259)
T ss_dssp -----HHHHHHHH-HHTTEEEEEEEEEESSTTSCCSEEEEEEEETC
T ss_pred -----HHHHHHHH-HHCCCceEEEEEeecCCCCCcEEEEEEEEeCC
Confidence 11112223 44789988888887777666667888888854
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-14 Score=127.36 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=75.6
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCC--cEEEeccCCCCCCCC-----CCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPF-----EDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~--~~~~~D~~~~~~lpf-----~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.++++. .++..++ ..++. .+++||+|+++.+++
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~---~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDL---LDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEE---CCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeee---eecccccccccCCCccEEEEhhhhH
Confidence 3468999999999744444445789999999999999887642 2455555 34333 257899999999999
Q ss_pred ccC--CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 210 YLT--KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 210 ~~~--d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+. +...+++++.++| |||.+++++..
T Consensus 122 ~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 122 RFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 985 5678999999999 99999998654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.4e-15 Score=137.80 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=79.8
Q ss_pred HHHhhhcCCceeeccCc------CCccc--cCCC-CCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCC------
Q 022305 131 IAALTKYYSEVFPPSNT------PGVSH--FPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFE------ 195 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG------~G~~~--~~~~-~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~------ 195 (299)
+..+.....+|||+||| +|... +... .++++|+|+|+|+.|.. ...+++++++|+ .++++.
T Consensus 210 L~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-~~~rI~fv~GDa---~dlpf~~~l~~~ 285 (419)
T 3sso_A 210 FRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-DELRIRTIQGDQ---NDAEFLDRIARR 285 (419)
T ss_dssp HGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-CBTTEEEEECCT---TCHHHHHHHHHH
T ss_pred HHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-cCCCcEEEEecc---cccchhhhhhcc
Confidence 33344456799999999 44322 2222 36789999999999953 345699999999 888887
Q ss_pred CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 196 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++||+|+|.. .|+..+..++|++++|+|||||+++++...
T Consensus 286 d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 286 YGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999975 577788999999999999999999998554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-14 Score=123.40 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccC--CCCCCCeEEEEeCC-HHHHHhc---CC--------CCcEEEeccCCCCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMN-EEELKRN---PV--------LTEYVVQDLNLNPKLP 193 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S-~~ml~~a---~~--------~~~~~~~D~~~~~~lp 193 (299)
+.+.+.+.+...+|||+|||+|..... ...++.+|+|+|+| +.|++.| ++ +++++++|+ +.+|
T Consensus 15 ~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~---~~l~ 91 (225)
T 3p2e_A 15 DELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA---ESLP 91 (225)
T ss_dssp HHHHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBT---TBCC
T ss_pred HHHHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCH---HHhh
Confidence 334444455567899999999974433 23678899999999 7787665 43 367888998 7775
Q ss_pred CC-CCCeeEEEecccccc-----cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 194 FE-DNSFDVITNVVSVDY-----LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 194 f~-~~~FD~Vis~~~l~~-----~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.. .+.+|.|.++....+ ..+...+|++++|+|||||.+++.
T Consensus 92 ~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 92 FELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp GGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred hhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 32 245666655543221 234567999999999999998883
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=118.06 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=80.1
Q ss_pred hhhcCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeE
Q 022305 134 LTKYYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDV 201 (299)
Q Consensus 134 l~~~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~ 201 (299)
+.+...+|||+|||+|... +....++.+++|+|+|+.|++.+++ +++++.+|+ ..++ +++++||+
T Consensus 38 f~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 38 FGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLTDYFEDGEIDR 114 (214)
T ss_dssp HTSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGGGTSCTTCCSE
T ss_pred cCCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCH---HHHHhhcCCCCCCE
Confidence 3344568999999999733 3344467899999999999987654 478999999 6676 77889999
Q ss_pred EEecccccccC--------CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~~~--------d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+++....|.. ....+++++.++|||||.+++...+.
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR 159 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 99997655443 23689999999999999999987543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=115.04 Aligned_cols=102 Identities=21% Similarity=0.113 Sum_probs=75.8
Q ss_pred HHHHhh-hcCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCC
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~ 197 (299)
+++.+. ....+|||+|||+|... +....++.+++|+|+|+.|++.+++ ++ ++.+|.. +.++..++
T Consensus 17 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~--~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAP--RAFDDVPD 93 (178)
T ss_dssp HHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTT--GGGGGCCS
T ss_pred HHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchH--hhhhccCC
Confidence 344442 23458999999999633 3444467899999999999998764 24 6667762 23344338
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+||+|++..+++| ..+++++.++|||||.+++.....
T Consensus 94 ~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 94 NPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 9999999999988 789999999999999999987654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-14 Score=124.47 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=81.1
Q ss_pred hhcCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC-C--CCCCCeeE
Q 022305 135 TKYYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P--FEDNSFDV 201 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l-p--f~~~~FD~ 201 (299)
.+....|||+|||+|... ++...++.+|+|+|+|+.|++.+++ +++++.+|+ ..+ + +++++||.
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da---~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 32 GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDA---VEVLHKMIPDNSLRM 108 (218)
T ss_dssp SSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCH---HHHHHHHSCTTCEEE
T ss_pred CCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCH---HHHHHHHcCCCChhe
Confidence 334568999999999733 3444567899999999999987653 378888998 553 3 78899999
Q ss_pred EEecccccccCCH--------HHHHHHHHhhccCCcEEEEEecCcchHHHH
Q 022305 202 ITNVVSVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 244 (299)
Q Consensus 202 Vis~~~l~~~~d~--------~~~l~ei~rvLkpGG~lii~~~~~~~~~~~ 244 (299)
|++++...|.... ..+++++.|+|||||.+++.+.+.......
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~ 159 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHM 159 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHH
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHH
Confidence 9998665554322 259999999999999999987765544433
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-14 Score=122.95 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=98.6
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|.... ... .+..+++++|+|+.+++.+++ ++++..+|+ .+.++++++||+|++
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~~~~~~~~D~v~~ 172 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL---EEAELEEAAYDGVAL 172 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG---GGCCCCTTCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch---hhcCCCCCCcCEEEE
Confidence 45689999999996332 222 246899999999999986643 467888998 666788889999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC----
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP---- 280 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~---- 280 (299)
+.+++..+++++.++|||||.+++..++.....+ ..+.+ +..||..+++.+...
T Consensus 173 -----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~----------------~~~~l-~~~gf~~~~~~~~~~~~~~ 230 (258)
T 2pwy_A 173 -----DLMEPWKVLEKAALALKPDRFLVAYLPNITQVLE----------------LVRAA-EAHPFRLERVLEVGWREWE 230 (258)
T ss_dssp -----ESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHH----------------HHHHH-TTTTEEEEEEEEEEEEEEE
T ss_pred -----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH----------------HHHHH-HHCCCceEEEEEeeeeEee
Confidence 4678889999999999999999998765422111 11222 347888777665311
Q ss_pred ---------CCCCCCCeEEEEEEecCC
Q 022305 281 ---------NPGRSDPMYVVYSRKAST 298 (299)
Q Consensus 281 ---------~~~~~~p~~~v~arK~~~ 298 (299)
......+.|++.|||...
T Consensus 231 ~~~~~~rp~~~~~~~~~~l~~ark~~~ 257 (258)
T 2pwy_A 231 VRLPVAHPRFQQVGHTAFLVALRRWKG 257 (258)
T ss_dssp EETTEEEECSSCCCCCCEEEEEEECCC
T ss_pred eccCccCCCCccCCcceEEEEEEecCC
Confidence 112345789999999864
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-14 Score=117.84 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=74.3
Q ss_pred hhcCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-CCCCCeeE
Q 022305 135 TKYYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDV 201 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f~~~~FD~ 201 (299)
.+...+|||+|||+|.... .... +..+++|+|+|+.|++.+++ +++++++|+ ..++ +.+++||+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~ 96 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNMDKYIDCPVKA 96 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGGGGTCCSCEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHHhhhccCCceE
Confidence 3445789999999996322 2221 34699999999999987754 377889998 6665 66789999
Q ss_pred EEeccccc---------ccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 202 ITNVVSVD---------YLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 202 Vis~~~l~---------~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|++...+. +..+..++++++.++|||||.+++...
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 99886541 112456899999999999999888753
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-14 Score=126.89 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=75.8
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||+|. ..+....++++|+|+|+|++|++.|++ +++++++|+ ..++ +++||+|++.
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~l~--d~~FDvV~~~ 195 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TVID--GLEFDVLMVA 195 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GGGG--GCCCSEEEEC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hhCC--CCCcCEEEEC
Confidence 345799999999874 222333468999999999999998765 378999998 6665 7899999986
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.. .+++.++++++.|+|||||.+++...
T Consensus 196 a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 196 AL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp TT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 54 58999999999999999999998754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=119.69 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=78.8
Q ss_pred hcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vi 203 (299)
.....|||+|||+|.. .++...++.+++|+|+|+.|++.|++ +++++.+|+ ..++ +++++||.|+
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~---~~l~~~~~~~~~d~v~ 113 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTLTDVFEPGEVKRVY 113 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGHHHHCCTTSCCEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCH---HHHHhhcCcCCcCEEE
Confidence 3446899999999973 33344567899999999999987654 378889998 6665 7788999999
Q ss_pred ecccccccCC--------HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 204 NVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 204 s~~~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
+++...|... ...+++++.++|||||.+++.+.+..
T Consensus 114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~ 157 (213)
T 2fca_A 114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG 157 (213)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred EECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 8765544432 36899999999999999999876543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-14 Score=119.32 Aligned_cols=99 Identities=6% Similarity=-0.034 Sum_probs=79.5
Q ss_pred cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vis~ 205 (299)
...+|||+|||+|...+ .......+|+|+|+|+.|++.+++ +++++++|+ .+++ +++++||+|++.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAV---AAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCH---HHHHHHCCSSCCSEEEEC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccH---HHHHhhccCCCccEEEEC
Confidence 34689999999997433 223344689999999999997765 367899998 5543 457899999999
Q ss_pred cccccc-CCHHHHHHHHHh--hccCCcEEEEEecCc
Q 022305 206 VSVDYL-TKPIEVFKEMCQ--VLKPGGLAIVSFSNR 238 (299)
Q Consensus 206 ~~l~~~-~d~~~~l~ei~r--vLkpGG~lii~~~~~ 238 (299)
..+++. ++..++++++.+ +|||||.++++.+..
T Consensus 121 ~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 121 PPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 887775 688999999999 999999999987653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-13 Score=123.05 Aligned_cols=144 Identities=13% Similarity=0.035 Sum_probs=94.1
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcC-------CCCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNP-------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~-------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||+|. ..+....++.+++++|++ .++..++ .+++++.+|+ . .+++ +||+|++.+++
T Consensus 185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~---~-~~~p--~~D~v~~~~vl 257 (348)
T 3lst_A 185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDF---L-REVP--HADVHVLKRIL 257 (348)
T ss_dssp SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCT---T-TCCC--CCSEEEEESCG
T ss_pred CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCC---C-CCCC--CCcEEEEehhc
Confidence 4689999999996 334445567899999995 4554322 1378999998 3 3444 89999999999
Q ss_pred cccCCH--HHHHHHHHhhccCCcEEEEEecCc-----chHHHHHHh--hhhcCC-CchhhhHHHHHHHhCCCCCCeeeec
Q 022305 209 DYLTKP--IEVFKEMCQVLKPGGLAIVSFSNR-----CFWTKAISI--WTSTGD-ADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 209 ~~~~d~--~~~l~ei~rvLkpGG~lii~~~~~-----~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
||++|. .++|++++++|||||.++|..... ......... +...+. .....-+.+.+ +++||+.+++...
T Consensus 258 h~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~~ 336 (348)
T 3lst_A 258 HNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLF-TAAGLRLDRVVGT 336 (348)
T ss_dssp GGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHH-HHTTEEEEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHH-HHCCCceEEEEEC
Confidence 999988 699999999999999888764321 111112111 111221 11222333344 5699999888761
Q ss_pred CCCCCCCCCeEEEEEEe
Q 022305 279 SPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 279 ~~~~~~~~p~~~v~arK 295 (299)
.....++.+++
T Consensus 337 ------~~~~~vie~~p 347 (348)
T 3lst_A 337 ------SSVMSIAVGVP 347 (348)
T ss_dssp ------SSSCEEEEEEE
T ss_pred ------CCCcEEEEEEe
Confidence 12345555554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=120.07 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcC--------------CCCcEEEeccCCCCC-CC--CCCCC
Q 022305 138 YSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNP--------------VLTEYVVQDLNLNPK-LP--FEDNS 198 (299)
Q Consensus 138 ~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~--------------~~~~~~~~D~~~~~~-lp--f~~~~ 198 (299)
..+|||+|||+|. ..++...++.+++|+|+|+.|++.|+ .+++++.+|+ .. ++ +++++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~---~~~l~~~~~~~~ 123 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNA---MKHLPNFFYKGQ 123 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCT---TTCHHHHCCTTC
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcH---HHhhhhhCCCcC
Confidence 4579999999996 33344556789999999999997543 2478999998 55 66 78899
Q ss_pred eeEEEecccccccCC--------HHHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 199 FDVITNVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 199 FD~Vis~~~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
||.|++.+.-.|... ...+++++.++|||||.|++.+.+.....
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~ 175 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHD 175 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHH
Confidence 999987654444321 14799999999999999999877654333
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=116.18 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=75.9
Q ss_pred hhhcCCceeeccCc-CCccccCCCCC-CCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCC-CCCCCCeeEEE
Q 022305 134 LTKYYSEVFPPSNT-PGVSHFPPGYK-QDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL-PFEDNSFDVIT 203 (299)
Q Consensus 134 l~~~~~~vLDiGcG-~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~l-pf~~~~FD~Vi 203 (299)
+.+...+|||+||| +|...+..... +.+|+|+|+|+.|++.+++ +++++++|+ ..+ ++++++||+|+
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GIIKGVVEGTFDVIF 128 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSSTTTCCSCEEEEE
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhhhhcccCceeEEE
Confidence 34455789999999 99743332222 6899999999999997765 378999997 333 45678999999
Q ss_pred ecccccccCC-------------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NVVSVDYLTK-------------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~~~l~~~~d-------------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++-.+++..+ ...+++++.++|||||.+++.++.
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 9866555433 478999999999999999987664
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-13 Score=114.28 Aligned_cols=93 Identities=3% Similarity=-0.108 Sum_probs=75.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|........+..+++|+|+|+.|++.+++ +++++.+|+ .. ++++++||+|++..+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRA---ED-VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCH---HH-HGGGCCCSEEEECSC-
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCc---cc-cccCCCCcEEEECCc-
Confidence 34689999999997333332367899999999999987664 367888888 44 666789999999987
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.++..+++++.++ |||.+++..++..
T Consensus 110 ---~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 110 ---KNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp ---SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred ---ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 7889999999999 9999999876543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=128.28 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.++++ ++++.+|+ ...+.++++||+|+++..+++
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~---~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDV---DEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TTTSCTTCCEEEEEECCCCCT
T ss_pred CCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcch---hhccccCCCeEEEEECCchhh
Confidence 45899999999975443333467999999999999987653 78999999 777777789999999999888
Q ss_pred -----cCCHHHHHHHHHhhccCCcEEEEEecCcchHHH
Q 022305 211 -----LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 211 -----~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~ 243 (299)
..+...+++++.++|||||.+++.......+..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~ 348 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEP 348 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHH
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHH
Confidence 456789999999999999999998765443333
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=111.97 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=77.3
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCC--------CCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lp--------f~~~~FD~Vis~ 205 (299)
...+|||+|||+|.... ... .++.+++|+|+|+ |++. .+++++.+|+ ...+ +++++||+|++.
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--~~~~~~~~d~---~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--VGVDFLQGDF---RDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--TTEEEEESCT---TSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--CcEEEEEccc---ccchhhhhhhccCCCCceeEEEEC
Confidence 44689999999996222 222 1357999999999 7765 4588899998 6766 778899999999
Q ss_pred ccccccCCH-----------HHHHHHHHhhccCCcEEEEEecCc
Q 022305 206 VSVDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 206 ~~l~~~~d~-----------~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
..+++..+. ..+++++.++|||||.+++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999888776 789999999999999999876654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-13 Score=120.61 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=97.6
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|.... ... .+..+++|+|+|+.+++.|+++ ++++.+|+ .+ ++++++||+|++
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~~~~D~v~~ 168 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI---YE-GIEEENVDHVIL 168 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG---GG-CCCCCSEEEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch---hh-ccCCCCcCEEEE
Confidence 45689999999996332 222 3478999999999999877652 67888888 43 367788999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCC--CCCCeeeecCCCC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGG--YEPPQAVDISPNP 282 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG--F~~v~~~~~~~~~ 282 (299)
+.+++..+++++.++|||||.+++..+...... ...+.+ +..| |..+++.++....
T Consensus 169 -----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~----------------~~~~~l-~~~g~~f~~~~~~e~~~r~ 226 (255)
T 3mb5_A 169 -----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVM----------------RLHEKL-REFKDYFMKPRTINVLVFD 226 (255)
T ss_dssp -----CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHH----------------HHHHHH-HHTGGGBSCCEEECCCCCC
T ss_pred -----CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHH----------------HHHHHH-HHcCCCccccEEEEEeeee
Confidence 467888999999999999999998765432111 122223 3477 9888887774431
Q ss_pred -------------CCCCCeEEEEEEecC
Q 022305 283 -------------GRSDPMYVVYSRKAS 297 (299)
Q Consensus 283 -------------~~~~p~~~v~arK~~ 297 (299)
.....-|+++|||.-
T Consensus 227 ~~~~~~~~rp~~~~~~htg~l~~ark~~ 254 (255)
T 3mb5_A 227 QEVKKECMRPRTTALVHTGYITFARRIL 254 (255)
T ss_dssp EEEETTEEEECSCCCCCSCEEEEEEBCC
T ss_pred eEecCCccCCCcccccccEEEEEEEEec
Confidence 123456999999963
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-13 Score=121.39 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=96.3
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC---CCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE---DNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~---~~~FD~Vis 204 (299)
..+|||+|||+|...+ ....++.+|+|+|+|+.|++.+++ +++++++|+ ++++.. +++||+|+|
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~---~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA---EVLAREAGHREAYARAVA 157 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCH---HHHTTSTTTTTCEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcH---HHhhcccccCCCceEEEE
Confidence 4689999999997433 333467899999999999987764 378899998 666643 478999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
.. +.+...+++++.++|||||.+++...... ..+ +.-....+ ...||...++..+.. |+.
T Consensus 158 ~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~-~~e-------------~~~~~~~l-~~~G~~~~~~~~~~~-p~~ 217 (249)
T 3g89_A 158 RA----VAPLCVLSELLLPFLEVGGAAVAMKGPRV-EEE-------------LAPLPPAL-ERLGGRLGEVLALQL-PLS 217 (249)
T ss_dssp ES----SCCHHHHHHHHGGGEEEEEEEEEEECSCC-HHH-------------HTTHHHHH-HHHTEEEEEEEEEEC-TTT
T ss_pred CC----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc-HHH-------------HHHHHHHH-HHcCCeEEEEEEeeC-CCC
Confidence 75 35778999999999999998887543211 111 11222223 336898888877733 334
Q ss_pred CCCeEEEEEEecC
Q 022305 285 SDPMYVVYSRKAS 297 (299)
Q Consensus 285 ~~p~~~v~arK~~ 297 (299)
....++++.+|.+
T Consensus 218 ~~~R~l~~~~k~~ 230 (249)
T 3g89_A 218 GEARHLVVLEKTA 230 (249)
T ss_dssp CCEEEEEEEEECS
T ss_pred CCcEEEEEEEeCC
Confidence 4566777777753
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-14 Score=125.85 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=82.7
Q ss_pred CceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-CcEEEe---ccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-TEYVVQ---DLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-~~~~~~---D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
.+|||+|||+|.........+ .+|+|+|+|++|++.+.++ ...... ++.....-.++...||.+.+..++.++
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l-- 116 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL-- 116 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG--
T ss_pred CEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH--
Confidence 489999999996332222224 5999999999999876543 222211 110000000111123444433333333
Q ss_pred HHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcC---CC-chhhhHHHHHH--HhCCCCCCeeeecCCCCCCCCC
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTG---DA-DHVMIVGAYFH--YAGGYEPPQAVDISPNPGRSDP 287 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~--~~aGF~~v~~~~~~~~~~~~~p 287 (299)
..+|++++|+|||||.+++.+ .+. +..........+ +. .|.....++.. .++||+.+.+...+...+..+.
T Consensus 117 -~~~l~~i~rvLkpgG~lv~~~-~p~-~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~ 193 (232)
T 3opn_A 117 -DLILPPLYEILEKNGEVAALI-KPQ-FEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNV 193 (232)
T ss_dssp -GGTHHHHHHHSCTTCEEEEEE-CHH-HHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBC
T ss_pred -HHHHHHHHHhccCCCEEEEEE-Ccc-cccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCH
Confidence 789999999999999988865 221 111111111111 11 11112222222 6689997766554433344566
Q ss_pred eEEEEEEecC
Q 022305 288 MYVVYSRKAS 297 (299)
Q Consensus 288 ~~~v~arK~~ 297 (299)
-|++.++|.+
T Consensus 194 e~l~~~~~~~ 203 (232)
T 3opn_A 194 EFLVHLLKDG 203 (232)
T ss_dssp CEEEEEEESS
T ss_pred HHHHHHhhcc
Confidence 7888888854
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=115.22 Aligned_cols=157 Identities=12% Similarity=0.092 Sum_probs=97.0
Q ss_pred hccccHHHHHHhh----hcCCceeeccCcCCc--cccCCC-CCCCeEEEEeCCHHHHH----hc--CCCCcEEEeccCCC
Q 022305 123 VTHIDDPAIAALT----KYYSEVFPPSNTPGV--SHFPPG-YKQDRIVGMGMNEEELK----RN--PVLTEYVVQDLNLN 189 (299)
Q Consensus 123 ~~~l~~~~~~~l~----~~~~~vLDiGcG~G~--~~~~~~-~~~~~v~gvD~S~~ml~----~a--~~~~~~~~~D~~~~ 189 (299)
...+...++..+. +...+|||+|||+|. .+++.. .+.++|+|+|+|+.|++ .+ +.++.++++|+
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da--- 134 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADA--- 134 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCT---
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccc---
Confidence 3344444444442 244689999999996 222222 24679999999998853 33 24588899998
Q ss_pred CCCC---CCCCCeeEEEecccccccCCHHHHH-HHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH
Q 022305 190 PKLP---FEDNSFDVITNVVSVDYLTKPIEVF-KEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 265 (299)
Q Consensus 190 ~~lp---f~~~~FD~Vis~~~l~~~~d~~~~l-~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (299)
.... ...++||+|++..+. ++..+.+ ..+.++|||||.+++++...+. .++. ...+...-....+
T Consensus 135 ~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~------d~t~-~~~e~~~~~~~~L- 203 (232)
T 3id6_C 135 RFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSI------DVTK-DPKEIYKTEVEKL- 203 (232)
T ss_dssp TCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------------C-CSSSSTTHHHHHH-
T ss_pred ccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCc------ccCC-CHHHHHHHHHHHH-
Confidence 4332 224689999998654 5655555 5566699999999998654331 1111 1111112223333
Q ss_pred HhCCCCCCeeeecCCCCCCCCCeEEEEEEec
Q 022305 266 YAGGYEPPQAVDISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 266 ~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~ 296 (299)
+++||++.+..++.|- ....+.|+++|.
T Consensus 204 ~~~gf~~~~~~~l~p~---~~~h~~v~~~~~ 231 (232)
T 3id6_C 204 ENSNFETIQIINLDPY---DKDHAIVLSKYK 231 (232)
T ss_dssp HHTTEEEEEEEECTTT---CSSCEEEEEEEC
T ss_pred HHCCCEEEEEeccCCC---cCceEEEEEEeC
Confidence 4578999998887642 346788888885
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=121.87 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=102.2
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|+|+|||.|. ..+...+|+.+++..|. |.+++.+++ +++++.+|+ .+.|.+ .+|+|++.+
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~--~~D~~~~~~ 252 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLP--EADLYILAR 252 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCT---TTSCCC--CCSEEEEES
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcc---ccCCCC--CceEEEeee
Confidence 45689999999996 45566778889999998 788886653 488999998 554543 479999999
Q ss_pred cccccCCH--HHHHHHHHhhccCCcEEEEEec---C--c-chHHHHH--HhhhhcCCCch-hhhHHHHHHHhCCCCCCee
Q 022305 207 SVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS---N--R-CFWTKAI--SIWTSTGDADH-VMIVGAYFHYAGGYEPPQA 275 (299)
Q Consensus 207 ~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~---~--~-~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~aGF~~v~~ 275 (299)
+||+++|. .++|++++++|||||.++|... . . ......+ ..+...++.++ ..-+.+.+ +++||+.+++
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll-~~AGf~~v~v 331 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLL-SSAGFRDFQF 331 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHH-HHHTCEEEEE
T ss_pred ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHH-HHCCCceEEE
Confidence 99999876 5789999999999997766432 1 1 1122222 22222333222 22334444 5699999988
Q ss_pred eecCCCCCCCCCeEEEEEEec
Q 022305 276 VDISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 276 ~~~~~~~~~~~p~~~v~arK~ 296 (299)
.... .++.+|+|||-
T Consensus 332 ~~~~------~~~~~i~ArKg 346 (353)
T 4a6d_A 332 KKTG------AIYDAILARKG 346 (353)
T ss_dssp ECCS------SSCEEEEEECC
T ss_pred EEcC------CceEEEEEEec
Confidence 6542 46788999994
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-13 Score=120.85 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=97.5
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+|||+|||+|.... ... .+..+++++|+|+.+++.+++ +++++.+|+ ...++++++||+|
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~---~~~~~~~~~~D~v 175 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVDRA 175 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GGCCCCTTCEEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch---HhcCCCCCceeEE
Confidence 44689999999996332 221 246899999999999876542 467888898 6777778899999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 282 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~ 282 (299)
++ +++++..+++++.++|||||.+++..++.....+. ...+....||..+++.+.....
T Consensus 176 ~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----------------~~~l~~~~~f~~~~~~~~~~~~ 234 (280)
T 1i9g_A 176 VL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRI----------------VEALRAKQCWTEPRAWETLQRG 234 (280)
T ss_dssp EE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHH----------------HHHHHHHSSBCCCEEECCCCCC
T ss_pred EE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHH----------------HHHHHhcCCcCCcEEEEEeeeE
Confidence 98 45688899999999999999999987754322221 1222233678777766653321
Q ss_pred -------------CCCCCeEEEEEEecC
Q 022305 283 -------------GRSDPMYVVYSRKAS 297 (299)
Q Consensus 283 -------------~~~~p~~~v~arK~~ 297 (299)
....+.|++.+||..
T Consensus 235 ~~~~~~~~~p~~~~~~~~~~lv~~rk~~ 262 (280)
T 1i9g_A 235 WNVVGLAVRPQHSMRGHTAFLVATRRLA 262 (280)
T ss_dssp EEEETTEEEECSCCCCCSCEEEEEEBCC
T ss_pred eEeccceeCCCCcccCccEEEEEEEecC
Confidence 123566999999975
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=116.69 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=90.3
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec-
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV- 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~- 205 (299)
...+|||+|||+|.... ....++.+++|+|+|+.|++.+++ +++++++|+ .. ++++++||+|+++
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~---~~-~~~~~~fD~Iv~np 184 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FS-ALAGQQFAMIVSNP 184 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TG-GGTTCCEEEEEECC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcch---hh-hcccCCccEEEECC
Confidence 34689999999997332 323467899999999999987664 367888887 43 3446789999998
Q ss_pred ------------ccccccC------------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHH
Q 022305 206 ------------VSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG 261 (299)
Q Consensus 206 ------------~~l~~~~------------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (299)
.+++|.+ +...+++++.++|||||.++++.+.. ....+.
T Consensus 185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~~ 247 (276)
T 2b3t_A 185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-----------------QGEAVR 247 (276)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-----------------CHHHHH
T ss_pred CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch-----------------HHHHHH
Confidence 3444433 35788999999999999999975321 112234
Q ss_pred HHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEe
Q 022305 262 AYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 262 ~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK 295 (299)
+.+ ..+||..+++..-. ..-..+++++|
T Consensus 248 ~~l-~~~Gf~~v~~~~d~-----~g~~r~~~~~~ 275 (276)
T 2b3t_A 248 QAF-ILAGYHDVETCRDY-----GDNERVTLGRY 275 (276)
T ss_dssp HHH-HHTTCTTCCEEECT-----TSSEEEEEEEC
T ss_pred HHH-HHCCCcEEEEEecC-----CCCCcEEEEEE
Confidence 444 34799988765421 12334555665
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=121.25 Aligned_cols=91 Identities=10% Similarity=0.042 Sum_probs=76.0
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||+|. ..+...+++.+++++|+ +.|++.+++ .++++.+|+ .. +++ .||+|++.+++||++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~~--~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDM---FK-SIP--SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCT---TT-CCC--CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCcc---CC-CCC--CceEEEEcccccCCC
Confidence 34789999999996 33444456789999999 799998875 488899998 55 555 499999999999999
Q ss_pred CHH--HHHHHHHhhccC---CcEEEEE
Q 022305 213 KPI--EVFKEMCQVLKP---GGLAIVS 234 (299)
Q Consensus 213 d~~--~~l~ei~rvLkp---GG~lii~ 234 (299)
|+. ++|++++++||| ||.++|.
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 877 999999999999 9988775
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-13 Score=116.60 Aligned_cols=92 Identities=11% Similarity=-0.004 Sum_probs=75.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|.........+.+|+|+|+|+.+++.+++ +++++.+|. ...+.++++||+|++..++
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG---WQGWQARAPFDAIIVTAAP 153 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEESSBC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc---ccCCccCCCccEEEEccch
Confidence 45789999999997333222236899999999999987764 367889998 5666667899999999999
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+++ ++.++|||||.+++.+++
T Consensus 154 ~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCCT------HHHHTEEEEEEEEEEECS
T ss_pred hhhhH------HHHHhcccCcEEEEEEcC
Confidence 99986 689999999999999876
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-13 Score=113.04 Aligned_cols=91 Identities=9% Similarity=0.040 Sum_probs=72.7
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|.... ....++.+++|+|+|+.|++.+++ +++++.+|+ ..++ ++++||+|++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~-~~~~~D~i~~~~- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEFP-SEPPFDGVISRA- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTSC-CCSCEEEEECSC-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecch---hhCC-ccCCcCEEEEec-
Confidence 4689999999997332 223457899999999999987654 277888998 6655 457899999864
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+.++..+++++.++|||||.+++...
T Consensus 141 ---~~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 141 ---FASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---cCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 36788999999999999999998744
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-13 Score=121.64 Aligned_cols=144 Identities=12% Similarity=0.070 Sum_probs=92.6
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCC--CCCCee
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPF--EDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf--~~~~FD 200 (299)
...+|||+|||+|. ..+....+..+|+++|+|+.|++.+++ +++++.+|+ ..++. .+++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~~~~fD 171 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDG---LAFVRQTPDNTYD 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHHHSSCTTCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH---HHHHHhccCCcee
Confidence 45689999999996 223333346799999999999987653 367888888 55543 478999
Q ss_pred EEEecccccccCCH----HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeee
Q 022305 201 VITNVVSVDYLTKP----IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 201 ~Vis~~~l~~~~d~----~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~ 276 (299)
+|++....++.+.. .++++++.|+|||||.+++...+..... .....+.+.+ +++||..++..
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~------------~~~~~~~~~l-~~~GF~~v~~~ 238 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDL------------ELIEKMSRFI-RETGFASVQYA 238 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCH------------HHHHHHHHHH-HHHTCSEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccch------------HHHHHHHHHH-HhCCCCcEEEE
Confidence 99997666554332 6899999999999999998765431100 1111222233 45789988877
Q ss_pred ecCCCCCCCCCeEEEEEEec
Q 022305 277 DISPNPGRSDPMYVVYSRKA 296 (299)
Q Consensus 277 ~~~~~~~~~~p~~~v~arK~ 296 (299)
...-+......+-.++|.|.
T Consensus 239 ~~~vP~yp~g~w~f~~as~~ 258 (304)
T 3bwc_A 239 LMHVPTYPCGSIGTLVCSKK 258 (304)
T ss_dssp ECCCTTSTTSCCEEEEEESS
T ss_pred EeecccccCcceEEEEEeCC
Confidence 65433222344555566663
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=110.83 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCceeeccCcCCcc--ccCCCCC--CCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCC--------------------
Q 022305 138 YSEVFPPSNTPGVS--HFPPGYK--QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-------------------- 193 (299)
Q Consensus 138 ~~~vLDiGcG~G~~--~~~~~~~--~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lp-------------------- 193 (299)
..+|||+|||+|.. .+....+ +.+|+|+|+|+.+ ...+++++++|+ ...+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---~~~~v~~~~~d~---~~~~~~~~~~~~~i~~~~~~~~~~ 96 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---PIPNVYFIQGEI---GKDNMNNIKNINYIDNMNNNSVDY 96 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---CCTTCEEEECCT---TTTSSCCC-----------CHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---CCCCceEEEccc---cchhhhhhccccccccccchhhHH
Confidence 45899999999962 2333334 5799999999932 223588999998 6665
Q ss_pred -----CCCCCeeEEEecccccccC----CH-------HHHHHHHHhhccCCcEEEEEecC
Q 022305 194 -----FEDNSFDVITNVVSVDYLT----KP-------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 194 -----f~~~~FD~Vis~~~l~~~~----d~-------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++++||+|++..++++.. +. ..+++++.++|||||.+++.+..
T Consensus 97 ~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 97 KLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5678999999998877642 22 24789999999999999987543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=115.70 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHhh--hcCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCC--
Q 022305 130 AIAALT--KYYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFED-- 196 (299)
Q Consensus 130 ~~~~l~--~~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~-- 196 (299)
+++.+. ....+|||+|||+|... +....++.+++|+|+|+.|++.++++ ++++++|+ .+ ++++
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~-~~~~~~ 96 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG---IE-WLIERA 96 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHH---HH-HHHHHH
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcch---Hh-hhhhhh
Confidence 344443 34568999999999632 23334567999999999999988874 45666777 44 5555
Q ss_pred ---CCeeEEEecccccccCCH--------------------------HHHHHHHHhhccCCcE-EEEEec
Q 022305 197 ---NSFDVITNVVSVDYLTKP--------------------------IEVFKEMCQVLKPGGL-AIVSFS 236 (299)
Q Consensus 197 ---~~FD~Vis~~~l~~~~d~--------------------------~~~l~ei~rvLkpGG~-lii~~~ 236 (299)
++||+|+++..+++..+. ..+++++.++|||||. +++.++
T Consensus 97 ~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 97 ERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 899999996444332211 7788999999999999 677654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=115.30 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=101.0
Q ss_pred cHHHHHHhhh--cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCC
Q 022305 127 DDPAIAALTK--YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNP 190 (299)
Q Consensus 127 ~~~~~~~l~~--~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~ 190 (299)
+..++..+.. ...+|||+|||+|...+ ....+..+|+|+|+++.|++.+++ +++++++|+ .
T Consensus 24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~---~ 100 (260)
T 2ozv_A 24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV---T 100 (260)
T ss_dssp HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT---T
T ss_pred HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH---H
Confidence 3334454432 34589999999997322 333346799999999999986543 267888998 5
Q ss_pred CC-------CCCCCCeeEEEecccccc------------------cCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHH
Q 022305 191 KL-------PFEDNSFDVITNVVSVDY------------------LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI 245 (299)
Q Consensus 191 ~l-------pf~~~~FD~Vis~~~l~~------------------~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~ 245 (299)
++ ++++++||+|+++--+.. ..+...+++++.++|||||.+++..+... .
T Consensus 101 ~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~---- 175 (260)
T 2ozv_A 101 LRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS-V---- 175 (260)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG-H----
T ss_pred HHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH-H----
Confidence 55 356789999999832211 12478899999999999999988755321 0
Q ss_pred HhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCeEEEEEEecC
Q 022305 246 SIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 297 (299)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~~~v~arK~~ 297 (299)
.-+...+. ..|....+..+.+.++.....+++.++|.+
T Consensus 176 ------------~~~~~~l~--~~~~~~~i~~v~~~~~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 176 ------------AEIIAACG--SRFGGLEITLIHPRPGEDAVRMLVTAIKGS 213 (260)
T ss_dssp ------------HHHHHHHT--TTEEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred ------------HHHHHHHH--hcCCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence 11122222 237777877777777666777888888865
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-13 Score=126.46 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=75.0
Q ss_pred hcCCceeeccCcCCccccCC--CCCCCeEEEEeCCHHHHHhcCC-----------------CCcEEEeccCCCCCCCCCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPP--GYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~--~~~~~~v~gvD~S~~ml~~a~~-----------------~~~~~~~D~~~~~~lpf~~ 196 (299)
+...+|||+|||+|...+.. ..+..+++|||+|+.|++.|++ +++++++|+ .++++.+
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~---~~lp~~d 248 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF---LSEEWRE 248 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT---TSHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc---cCCcccc
Confidence 34568999999999744322 2233469999999998876542 478999999 7888754
Q ss_pred --CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 197 --NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 197 --~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..||+|+++..+ +.+++...|.+++|+|||||.||+.
T Consensus 249 ~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 249 RIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp HHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred ccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 479999998765 4578899999999999999999875
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.8e-13 Score=117.61 Aligned_cols=129 Identities=12% Similarity=0.186 Sum_probs=90.9
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
....+|||+|||+|.........+.+|+|+|+|+.+++.++++ +++..+|+ .. ++++++||+|+++...
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~---~~-~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EA-ALPFGPFDLLVANLYA 194 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HH-HGGGCCEEEEEEECCH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh---hh-cCcCCCCCEEEECCcH
Confidence 4457899999999974333332345999999999999877653 67888887 33 2456789999998655
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCCCCCCe
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM 288 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~~~~p~ 288 (299)
++ ...+++++.++|||||.++++..... ....+.+.+ ..+||+.+++... +.+
T Consensus 195 ~~---~~~~l~~~~~~LkpgG~lils~~~~~----------------~~~~v~~~l-~~~Gf~~~~~~~~-------~~W 247 (254)
T 2nxc_A 195 EL---HAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAM-AGAGFRPLEEAAE-------GEW 247 (254)
T ss_dssp HH---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHH-HHTTCEEEEEEEE-------TTE
T ss_pred HH---HHHHHHHHHHHcCCCCEEEEEeeccC----------------CHHHHHHHH-HHCCCEEEEEecc-------CCe
Confidence 54 57899999999999999998643211 112333334 4489998776542 356
Q ss_pred EEEEEEe
Q 022305 289 YVVYSRK 295 (299)
Q Consensus 289 ~~v~arK 295 (299)
..++++|
T Consensus 248 ~~l~~~k 254 (254)
T 2nxc_A 248 VLLAYGR 254 (254)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 6677765
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=118.56 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=73.4
Q ss_pred CCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc-
Q 022305 138 YSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV- 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~- 206 (299)
..+|||+|||+|...... .....+|+|+|+|+ |++.|++ +++++.+|+ +++++++++||+|++..
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKI---EEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSCSCEEEEEECCC
T ss_pred CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeH---HHhcCCCCcEEEEEEcCc
Confidence 468999999999733322 22335999999996 8887653 478899999 88888889999999876
Q ss_pred --cccccCCHHHHHHHHHhhccCCcEEE
Q 022305 207 --SVDYLTKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 207 --~l~~~~d~~~~l~ei~rvLkpGG~li 232 (299)
.+.|..++..+++++.|+|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 46666788899999999999999887
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-13 Score=120.63 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=64.9
Q ss_pred CceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhc-CCCCcEEE---eccCCCCCCC---CCCCCeeEEEecccccc
Q 022305 139 SEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRN-PVLTEYVV---QDLNLNPKLP---FEDNSFDVITNVVSVDY 210 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a-~~~~~~~~---~D~~~~~~lp---f~~~~FD~Vis~~~l~~ 210 (299)
.++||+|||+|.... .......+|+|+|+|++||+.+ ++...... .|+ ..++ ++..+||+|++..++++
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni---~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNF---RYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCG---GGCCGGGCTTCCCSEEEECCSSSC
T ss_pred cEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCc---eecchhhCCCCCCCEEEEEeeHhh
Confidence 589999999996432 2222346999999999999873 32223222 233 2232 34456999999888775
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+ ..+|.+++|+|||||.+++.+
T Consensus 164 l---~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 164 L---NLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp G---GGTHHHHHHHSCTTCEEEEEE
T ss_pred H---HHHHHHHHHHcCcCCEEEEEE
Confidence 4 889999999999999888864
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-13 Score=114.25 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=74.6
Q ss_pred CCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCC-C-CCCCC-eeEEE
Q 022305 138 YSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKL-P-FEDNS-FDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~l-p-f~~~~-FD~Vi 203 (299)
..+|||+|||+|...+. ......+|+|+|+|+.|++.+++ +++++.+|+ .++ + +++++ ||+|+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS---LDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH---HHHTTSCCSSCCEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCH---HHHHHhhccCCCCCEEE
Confidence 46899999999974432 22233689999999999987654 357888887 443 2 24678 99999
Q ss_pred ecccccccCCHHHHHHHH--HhhccCCcEEEEEecCcc
Q 022305 204 NVVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei--~rvLkpGG~lii~~~~~~ 239 (299)
+...++ ..+...+++++ .|+|||||.++++.....
T Consensus 131 ~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred ECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 987744 66788899999 778999999999876543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-13 Score=115.30 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=72.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++.+|+ ......+++||+|++..+++|
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEEESSBBSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc---ccccccCCCccEEEECCcHHH
Confidence 44689999999996333222223799999999999987765 477888998 442234678999999999999
Q ss_pred cCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 211 LTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 211 ~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+. .++.++|||||.+++.+++.
T Consensus 147 ~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 147 LL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CC------HHHHHTEEEEEEEEEEECSS
T ss_pred HH------HHHHHHcCCCcEEEEEEcCC
Confidence 86 47899999999999987653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=121.33 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=79.0
Q ss_pred HHHHh-hhcCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCe
Q 022305 130 AIAAL-TKYYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 130 ~~~~l-~~~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~F 199 (299)
+++.+ .....+|||+|||+|... +....+..+|+|+|+|+.|++.++++ .+++.+|+ ... .+++|
T Consensus 188 ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~---~~~--~~~~f 262 (343)
T 2pjd_A 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV---FSE--VKGRF 262 (343)
T ss_dssp HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TTT--CCSCE
T ss_pred HHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccc---ccc--ccCCe
Confidence 44444 334568999999999732 23333557999999999999977653 56777787 433 36789
Q ss_pred eEEEecccccc-----cCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 200 DVITNVVSVDY-----LTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 200 D~Vis~~~l~~-----~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+|+++..+|+ ..+..++++++.|+|||||.+++..+..
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 99999998885 3467899999999999999999876653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-13 Score=121.98 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=70.7
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC-------------------CCcEEEeccCCCCCC--
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV-------------------LTEYVVQDLNLNPKL-- 192 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~-------------------~~~~~~~D~~~~~~l-- 192 (299)
...+|||+|||+|.... ... .+..+|+|+|+++.+++.|++ +++++.+|+ .++
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~---~~~~~ 181 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI---SGATE 181 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT---TCCC-
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh---HHccc
Confidence 45689999999996332 222 234899999999999987643 477888998 555
Q ss_pred CCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHH
Q 022305 193 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 243 (299)
Q Consensus 193 pf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~ 243 (299)
++++++||+|++.. .++..+++++.++|||||.+++..++.....+
T Consensus 182 ~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 227 (336)
T 2b25_A 182 DIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIE 227 (336)
T ss_dssp ------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHH
T ss_pred ccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence 56778899999853 45556899999999999999988877544433
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=108.36 Aligned_cols=139 Identities=14% Similarity=0.117 Sum_probs=89.5
Q ss_pred CCceeeccCcCCccccCC--CC-CCCeEEEEeCCHHHHHhcC------CCCcEEEeccCCCCCC---CCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPP--GY-KQDRIVGMGMNEEELKRNP------VLTEYVVQDLNLNPKL---PFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~~-~~~~v~gvD~S~~ml~~a~------~~~~~~~~D~~~~~~l---pf~~~~FD~Vis~ 205 (299)
..+|||+|||+|...... .. +..+|+|+|+|+.|++.+. .+++++.+|+ ... ...+++||+|++.
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCGGGGTTTCCCEEEEEEC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccC---CCcchhhcccCCceEEEEC
Confidence 458999999999733322 21 3479999999998876542 2478899998 442 1224689999986
Q ss_pred ccccccCCHH-HHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH--HhCCCCCCeeeecCCCC
Q 022305 206 VSVDYLTKPI-EVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEPPQAVDISPNP 282 (299)
Q Consensus 206 ~~l~~~~d~~-~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~aGF~~v~~~~~~~~~ 282 (299)
.. .++.. .+++++.++|||||.+++.+..... ......+ .+..+.+. ..+ |+.++..++.+.
T Consensus 151 ~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------~~~~~~~-~~~~~~l~~l~~~-f~~~~~~~~~~~- 215 (227)
T 1g8a_A 151 VA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSI---------DVTKEPE-QVFREVERELSEY-FEVIERLNLEPY- 215 (227)
T ss_dssp CC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGT---------CTTSCHH-HHHHHHHHHHHTT-SEEEEEEECTTT-
T ss_pred CC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCC---------CCCCChh-hhhHHHHHHHHhh-ceeeeEeccCcc-
Confidence 54 23443 4599999999999999887543210 0011111 22222221 445 998888777542
Q ss_pred CCCCCeEEEEEEec
Q 022305 283 GRSDPMYVVYSRKA 296 (299)
Q Consensus 283 ~~~~p~~~v~arK~ 296 (299)
....|.++++|.
T Consensus 216 --~~~~~~~~~~~~ 227 (227)
T 1g8a_A 216 --EKDHALFVVRKT 227 (227)
T ss_dssp --SSSEEEEEEECC
T ss_pred --cCCCEEEEEEeC
Confidence 246789999873
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-13 Score=122.40 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=74.7
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...... ..+..+|+|+|+|+ |++.|++ +++++.+|+ +++++++++||+|++..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKV---EEVELPVEKVDIIISEW 141 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCSSSCEEEEEECC
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcH---HHccCCCCceEEEEEcc
Confidence 3468999999999733322 22345999999995 8887654 278999999 88899889999999976
Q ss_pred c---ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 207 S---VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 207 ~---l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+ +.+..++..+++++.|+|||||.++.+
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 5 444478999999999999999998754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=115.87 Aligned_cols=136 Identities=12% Similarity=0.097 Sum_probs=94.8
Q ss_pred cCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|.... ... .+..+++++|+|+.+++.+++ +++++.+|+ .+. +++++||+|++
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-~~~~~~D~V~~ 187 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI---SEG-FDEKDVDALFL 187 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG---GGC-CSCCSEEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH---HHc-ccCCccCEEEE
Confidence 34689999999996322 222 346899999999999987654 367788888 444 66678999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC--
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP-- 282 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~-- 282 (299)
+.+++..+++++.++|||||.+++..+...... .+.+.+. ..||..+++.+.....
T Consensus 188 -----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----------------~~~~~l~-~~gf~~~~~~~~~~~~~~ 245 (277)
T 1o54_A 188 -----DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQ----------------ETLKKLQ-ELPFIRIEVWESLFRPYK 245 (277)
T ss_dssp -----CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHH----------------HHHHHHH-HSSEEEEEEECCCCCCEE
T ss_pred -----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHH----------------HHHHHHH-HCCCceeEEEEEeeeeeE
Confidence 357888999999999999999999876432111 1122232 3778777665542221
Q ss_pred -----------CCCCCeEEEEEEecCC
Q 022305 283 -----------GRSDPMYVVYSRKAST 298 (299)
Q Consensus 283 -----------~~~~p~~~v~arK~~~ 298 (299)
....+-|++.|||...
T Consensus 246 ~~~~~~rp~~~~~~~~~~li~ark~~~ 272 (277)
T 1o54_A 246 PVPERLRPVDRMVAHTAYMIFATKVCR 272 (277)
T ss_dssp CCTTSCEECSCCCCCSCEEEEEEECSC
T ss_pred eccceeCCCccccCCCeEEEEEEecCC
Confidence 1235679999999753
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-13 Score=111.86 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=73.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCC-CC-C--CCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPK-LP-F--EDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~-lp-f--~~~~FD~Vis~ 205 (299)
...+|||+|||+|.........+.+++|+|+|+.|++.+++ +++++++|+ .+ ++ + .+++||+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccH---HHHHHhhhccCCceEEEEEC
Confidence 34689999999997443333334569999999999998775 478888887 44 22 1 13489999999
Q ss_pred ccccccCCHHHHHHHHH--hhccCCcEEEEEecCcc
Q 022305 206 VSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~--rvLkpGG~lii~~~~~~ 239 (299)
..++ .+..++++++. ++|||||.++++++...
T Consensus 118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 118 PPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 7765 56677777777 99999999999877644
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-14 Score=122.45 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=77.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++++|+ ..++ ++++||+|+++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF---LLLA-SFLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHG-GGCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECCh---HHhc-ccCCCCEEEECCC
Confidence 35789999999997444333346899999999999987654 378899998 6665 5689999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++|..++...+.++.++|||||.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 154 WGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred cCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 999988887889999999999987664
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-12 Score=109.38 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=75.3
Q ss_pred cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC----CCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL----PFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l----pf~~~~FD~V 202 (299)
...+|||+|||+|.... .......+|+|+|+|+.|++.+++ +++++.+|+ .+. ++++++||+|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA---NRALEQFYEEKLQFDLV 120 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH---HHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcH---HHHHHHHHhcCCCCCEE
Confidence 34689999999997433 222344799999999999987764 367888887 442 2336889999
Q ss_pred EecccccccCCHHHHHHHH--HhhccCCcEEEEEecCcc
Q 022305 203 TNVVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei--~rvLkpGG~lii~~~~~~ 239 (299)
++...++ ..+....++.+ .++|||||.+++..+...
T Consensus 121 ~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 121 LLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 9987743 45778888888 999999999999877643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-12 Score=110.58 Aligned_cols=97 Identities=8% Similarity=-0.065 Sum_probs=75.0
Q ss_pred CCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCC-CCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~-lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|...+. ......+|+|+|+|+.|++.+++ +++++++|+ .+ ++..+++||+|++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~---~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA---MSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH---HHHHSSCCCCEEEEEECCS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHHHhhcCCCCCEEEECCC
Confidence 46899999999974442 22223599999999999997764 367888887 44 5666789999999876
Q ss_pred ccccCCHHHHHHHHHh--hccCCcEEEEEecCc
Q 022305 208 VDYLTKPIEVFKEMCQ--VLKPGGLAIVSFSNR 238 (299)
Q Consensus 208 l~~~~d~~~~l~ei~r--vLkpGG~lii~~~~~ 238 (299)
+ +..+...+++++.+ +|||||.++++....
T Consensus 132 ~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 132 F-RRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 4 35678889999865 599999999987653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-13 Score=113.49 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=75.3
Q ss_pred hcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 136 KYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....+|||+|||.|...+. ...++.+++++|+|+.|++.++++ .++...|. ... .+.++||+|++..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~---~~~-~~~~~~DvVLa~k 123 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNK---ESD-VYKGTYDVVFLLK 123 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECC---HHH-HTTSEEEEEEEET
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecc---ccc-CCCCCcChhhHhh
Confidence 3467999999999973333 334678999999999999987753 24556776 333 4568899999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++|++++.+.++.++.+.|||||.+ |+++
T Consensus 124 ~LHlL~~~~~al~~v~~~L~pggvf-ISfp 152 (200)
T 3fzg_A 124 MLPVLKQQDVNILDFLQLFHTQNFV-ISFP 152 (200)
T ss_dssp CHHHHHHTTCCHHHHHHTCEEEEEE-EEEE
T ss_pred HHHhhhhhHHHHHHHHHHhCCCCEE-EEeC
Confidence 9999988888889999999999855 4555
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.9e-13 Score=116.24 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=74.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|.........+.+++++|+|+.+++.+++ ++++..+|+ .+..+++++||+|++
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~--- 164 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF---KDAEVPEGIFHAAFV--- 164 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT---TTSCCCTTCBSEEEE---
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh---hhcccCCCcccEEEE---
Confidence 44689999999996332221126799999999999987654 366777887 554336678999997
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
+.+++..+++++.++|||||.+++..++.....
T Consensus 165 --~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 197 (248)
T 2yvl_A 165 --DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVI 197 (248)
T ss_dssp --CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHH
T ss_pred --CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence 356888999999999999999999887654333
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=119.05 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=73.6
Q ss_pred CceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC-----------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~-----------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
.+|||+|||+|... +....++.+|+|+|+|+.|++.++++ ++++.+|+ .. ++++++||+|+++
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~---~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---LS-GVEPFRFNAVLCN 299 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST---TT-TCCTTCEEEEEEC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh---hc-cCCCCCeeEEEEC
Confidence 68999999999733 33344578999999999999877652 56688898 44 5677899999999
Q ss_pred ccccccCC-----HHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 206 VSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 206 ~~l~~~~d-----~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
..+++... ..++++++.++|||||.+++......
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 88876422 24789999999999999998765433
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-12 Score=111.95 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=74.6
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCC-----CCCe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFE-----DNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~-----~~~F 199 (299)
...+|||+|||+|...+ .... ++.+|+++|+|+.|++.+++ +++++++|+. +.++.. .++|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ--DLIPQLKKKYDVDTL 135 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH--HHGGGTTTTSCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH--HHHHHHHHhcCCCce
Confidence 45789999999997333 3332 37899999999999998765 2788899872 123322 2789
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+|++....++..+..++++++ ++|||||.++++..
T Consensus 136 D~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9999998888887777888888 99999999998643
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-12 Score=111.04 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=71.4
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|.... .... +..+|+|+|+|+.+++.+++ ++++..+|+ ......+++||+|++.
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG---TLGYEPLAPYDRIYTT 153 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG---GGCCGGGCCEEEEEES
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCCCCCeeEEEEC
Confidence 44689999999996322 2211 33799999999999987764 367888887 3222236789999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.+++|+. +++.++|||||.+++.+++.
T Consensus 154 ~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 154 AAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp SBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred CchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 9999987 48999999999999987754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-12 Score=111.49 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=73.6
Q ss_pred cCCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-f~~~~FD~Vis 204 (299)
...+|||+|||+|... +....++.+|+|+|+|+.|++.+++ +++++.+|+. +.++ ..+++||+|++
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNAL--EQFENVNDKVYDMIFI 148 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGG--GCHHHHTTSCEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH--HHHHhhccCCccEEEE
Confidence 4579999999999733 3334467899999999999987754 4788999983 2234 44789999997
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.. ...+...+++++.++|||||.+++.
T Consensus 149 ~~---~~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 149 DA---AKAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ET---TSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cC---cHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 64 3557788999999999999999885
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-12 Score=112.36 Aligned_cols=93 Identities=10% Similarity=-0.023 Sum_probs=73.0
Q ss_pred CCceeeccCcCCccccC--CC----CCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCC---CCCCC-CCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFP--PG----YKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPK---LPFED-NSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~--~~----~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~---lpf~~-~~FD~Vis 204 (299)
..+|||+|||+|..... .. .++++|+|+|+|+.|++.|+. +++++++|+ .. +++.+ .+||+|++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~---~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDC---SDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCS---SCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcc---hhHHHHHhhccCCCCEEEE
Confidence 46899999999973332 22 357899999999999988753 488999999 55 35434 47999998
Q ss_pred cccccccCCHHHHHHHHHh-hccCCcEEEEEec
Q 022305 205 VVSVDYLTKPIEVFKEMCQ-VLKPGGLAIVSFS 236 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~r-vLkpGG~lii~~~ 236 (299)
... | .+...+|+++.| +|||||.++++..
T Consensus 159 d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 159 DNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp ESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 654 4 378899999998 9999999999643
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-12 Score=108.65 Aligned_cols=99 Identities=7% Similarity=-0.005 Sum_probs=73.4
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|...... ..+..+|+|+|+|+.|++.+++ +++++.+|+ .+ ++..+++||+|++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~fD~i~~~ 107 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA---ERAIDCLTGRFDLVFLD 107 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH---HHHHHHBCSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcH---HHhHHhhcCCCCEEEEC
Confidence 3468999999999733322 2234799999999999987754 267888887 44 44445679999998
Q ss_pred ccccccCCHHHHHHHHH--hhccCCcEEEEEecCcc
Q 022305 206 VSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~--rvLkpGG~lii~~~~~~ 239 (299)
..++ ..+..+.++.+. ++|||||.++++.....
T Consensus 108 ~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 108 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 6653 245667777777 99999999999876643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-12 Score=114.96 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=72.8
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...... .....+|+|+|+| .|++.+++ +++++.+|+ +++++++++||+|++..
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~Ivs~~ 113 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKL---EDVHLPFPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSSSCEEEEEECC
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECch---hhccCCCCcccEEEEeC
Confidence 3468999999999633222 2233599999999 58876554 378899999 78888888999999874
Q ss_pred ---cccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 ---SVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ---~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.+.+..++..++.++.++|||||.++.
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred chhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 344556789999999999999999874
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-12 Score=120.65 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|...+.....+ .+|+|+|+| .|++.++++ ++++++|+ ++++++ ++||+|++..+
T Consensus 64 ~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 64 GKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSV---EDISLP-EKVDVIISEWM 138 (376)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCG---GGCCCS-SCEEEEEECCC
T ss_pred CCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECch---hhcCcC-CcceEEEEcCh
Confidence 4689999999997333222223 499999999 999876542 68999999 778776 88999999765
Q ss_pred cccc---CCHHHHHHHHHhhccCCcEEEEE
Q 022305 208 VDYL---TKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 208 l~~~---~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+++ .++..+++++.++|||||.++++
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 5554 56889999999999999999774
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=109.26 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcC----------------CCCcEEEeccCCCCC-CC--CCC
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNP----------------VLTEYVVQDLNLNPK-LP--FED 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~----------------~~~~~~~~D~~~~~~-lp--f~~ 196 (299)
..+|||+|||+|...+ ....+..+++|+|+|+.|++.++ .+++++.+|+ .. ++ +++
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~---~~~l~~~~~~ 126 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA---MKFLPNFFEK 126 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT---TSCGGGTSCT
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH---HHHHHHhccc
Confidence 3579999999997333 33335679999999999997552 2478899998 54 66 778
Q ss_pred CCeeEEEecccccccCC--------HHHHHHHHHhhccCCcEEEEEecCcch
Q 022305 197 NSFDVITNVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCF 240 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~d--------~~~~l~ei~rvLkpGG~lii~~~~~~~ 240 (299)
+++|.|+....-.+... ...+++++.++|||||.+++.+....+
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~ 178 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDL 178 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHH
Confidence 99999985432221110 048999999999999999997766443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-12 Score=112.77 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=70.4
Q ss_pred CCceeeccCcCCccccCC--C--CCCCeEEEEeCCHHHHHhcCCC-----------------------------------
Q 022305 138 YSEVFPPSNTPGVSHFPP--G--YKQDRIVGMGMNEEELKRNPVL----------------------------------- 178 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~--~~~~~v~gvD~S~~ml~~a~~~----------------------------------- 178 (299)
..+|||+|||+|...+.. . .++.+|+|+|+|+.|++.|+++
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 358999999999733322 1 2357899999999999877631
Q ss_pred --Cc-------------EEEeccCCCCCCCC-----CCCCeeEEEecccccccCC---------HHHHHHHHHhhccCCc
Q 022305 179 --TE-------------YVVQDLNLNPKLPF-----EDNSFDVITNVVSVDYLTK---------PIEVFKEMCQVLKPGG 229 (299)
Q Consensus 179 --~~-------------~~~~D~~~~~~lpf-----~~~~FD~Vis~~~l~~~~d---------~~~~l~ei~rvLkpGG 229 (299)
++ ++++|+ ..... ..++||+|+|+..+.+..+ ...+++++.++|||||
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 208 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADV---FDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCT---TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred hhhhhhccccccccccceeeccc---ccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence 44 888998 44321 4458999999876655543 4589999999999999
Q ss_pred EEEEE
Q 022305 230 LAIVS 234 (299)
Q Consensus 230 ~lii~ 234 (299)
.+++.
T Consensus 209 ~l~~~ 213 (250)
T 1o9g_A 209 VIAVT 213 (250)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99884
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-13 Score=130.20 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=77.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC--CCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l--pf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|......+..+++|+|||+|+.+|+.|+. +++|.++++ +++ ++++++||+|+|+.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRI---EEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCH---HHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCH---HHHhhhccCCCccEEEECc
Confidence 34589999999997555555568999999999999987653 278999998 777 56788999999999
Q ss_pred cccccCCHHH--HHHHHHhhccCCcE-EEEEec
Q 022305 207 SVDYLTKPIE--VFKEMCQVLKPGGL-AIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~--~l~ei~rvLkpGG~-lii~~~ 236 (299)
++||++|+.. .+..+.+.|+++|. +++.+.
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 9999998863 35577888888884 444443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-12 Score=117.56 Aligned_cols=92 Identities=20% Similarity=0.092 Sum_probs=72.5
Q ss_pred cCCceeeccCcCCccccC--CCCC-CCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFP--PGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~--~~~~-~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|..... .... ..+|+|+|+|++|++.+++ +++++.+|. ...+.++++||+|++.
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YYGVPEFSPYDVIFVT 151 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEEC
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh---hhccccCCCeEEEEEc
Confidence 456899999999963222 2222 3679999999999987764 277888998 5555456889999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+++|+. +++.++|||||.+++.+..
T Consensus 152 ~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 152 VGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp SBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred CCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 9999987 5789999999999998654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=111.16 Aligned_cols=93 Identities=12% Similarity=-0.026 Sum_probs=67.4
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----------CCcEE--EeccCCCCCCCCCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----------LTEYV--VQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~--~~D~~~~~~lpf~~~~FD~Vis 204 (299)
...+|||+|||+|......... .+|+|||+++ |+..+.+ ++.++ ++|+ ..++ +++||+|+|
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~---~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDI---HTLP--VERTDVIMC 146 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCT---TTSC--CCCCSEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCH---hHCC--CCCCcEEEE
Confidence 3468999999999632222112 7899999999 6443321 36778 7888 6665 789999999
Q ss_pred cccccccCCH----H---HHHHHHHhhccCCc--EEEEEecC
Q 022305 205 VVSVDYLTKP----I---EVFKEMCQVLKPGG--LAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~d~----~---~~l~ei~rvLkpGG--~lii~~~~ 237 (299)
..+ ++..++ . .+|+++.++||||| .|++.+..
T Consensus 147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 877 554432 1 38999999999999 99997654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-11 Score=101.25 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=66.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCC--------C---CCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF--------E---DNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf--------~---~~~FD~Vis~ 205 (299)
...+|||+|||+|.........+.+|+|+|+++.. ...+++++++|+ .+.+. . .++||+|+|.
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---~~~~v~~~~~D~---~~~~~~~~~~~~~~~~~~~~~D~Vlsd 98 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---EIAGVRFIRCDI---FKETIFDDIDRALREEGIEKVDDVVSD 98 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---CCTTCEEEECCT---TSSSHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---cCCCeEEEEccc---cCHHHHHHHHHHhhcccCCcceEEecC
Confidence 44689999999996333222237899999999852 223689999999 55442 1 1489999996
Q ss_pred cccccc----C-------CHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYL----T-------KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~----~-------d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
...... . ....+++++.++|||||.|++.+.
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 99 AMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 533211 1 135788999999999999988654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=109.50 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=72.2
Q ss_pred cCCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCCC--CCCeeE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFE--DNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf~--~~~FD~ 201 (299)
...+|||+|||+|.. .++...+ +.+|+|+|+|+.+++.+++ +++++++|+ .+ ++.. .++||+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA---LQSLESLGECPAFDL 139 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHTCCSCCCCSE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHhcCCCCCeEE
Confidence 457999999999963 3344444 7899999999999987654 377889987 33 3332 348999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|++.. ...+...+++++.++|||||.++++.
T Consensus 140 V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 140 IFIDA---DKPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp EEECS---CGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEECC---chHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 99865 34567889999999999999998864
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.1e-12 Score=109.22 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=72.9
Q ss_pred HHHHhh-hcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCC-
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDN- 197 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~- 197 (299)
+++.+. ....+|||+|||+|..... ...+ .+|+|+|+|+.+++.+++ +++++.+|. ..+++++
T Consensus 83 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~----~~~~~~~~ 157 (235)
T 1jg1_A 83 MLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG----SKGFPPKA 157 (235)
T ss_dssp HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG----GGCCGGGC
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc----ccCCCCCC
Confidence 344442 3446899999999963322 2222 789999999999987765 267778886 2344443
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.||+|++..+++++. .++.++|||||.+++.+++..
T Consensus 158 ~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred CccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecCC
Confidence 599999999999886 378999999999999987643
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=106.02 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=71.7
Q ss_pred cCCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCCCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf~~~~FD~Vi 203 (299)
...+|||+|||+|.. .+....+ +.+|+++|+|+.|++.+++ +++++.+|. .. ++..++ ||+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP---LGIAAGQRD-IDILF 131 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH---HHHHTTCCS-EEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH---HHHhccCCC-CCEEE
Confidence 346899999999963 3333334 6899999999999987764 267888887 43 354456 99999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+.. ...+...+++++.++|||||.+++..
T Consensus 132 ~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 132 MDC---DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EET---TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EcC---ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 873 34678899999999999999998863
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-11 Score=107.42 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=71.5
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCee
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
...+|||+|||+|.... .... +..+|+|+|+|+.+++.+++ +++++.+|+ ...+..+++||
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD 153 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG---RMGYAEEAPYD 153 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG---GGCCGGGCCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc---ccCcccCCCcC
Confidence 45689999999996322 2221 34699999999999987642 467888898 55555577899
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|++...++++. +++.++|||||.+++.+..
T Consensus 154 ~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 154 AIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 999999887764 6889999999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-11 Score=102.33 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=67.6
Q ss_pred cCCceeeccCcCCccc--cCCCCCC---------CeEEEEeCCHHHHHhcCCCCcEE-EeccCCCCCCC--------CCC
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQ---------DRIVGMGMNEEELKRNPVLTEYV-VQDLNLNPKLP--------FED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~---------~~v~gvD~S~~ml~~a~~~~~~~-~~D~~~~~~lp--------f~~ 196 (299)
...+|||+|||+|... +....+. .+|+|+|+|+.+ ...+++++ .+|+ ...+ +++
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---~~~~~~~~~~~d~---~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---PLEGATFLCPADV---TDPRTSQRILEVLPG 95 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---CCTTCEEECSCCT---TSHHHHHHHHHHSGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---cCCCCeEEEeccC---CCHHHHHHHHHhcCC
Confidence 3468999999999622 2222222 789999999943 12357788 8887 4432 345
Q ss_pred CCeeEEEecccccc----cCCH-------HHHHHHHHhhccCCcEEEEEecCc
Q 022305 197 NSFDVITNVVSVDY----LTKP-------IEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 197 ~~FD~Vis~~~l~~----~~d~-------~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++||+|+|..++++ ..+. ..+++++.++|||||.+++.+...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 78999999665443 3333 488999999999999999976543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.6e-12 Score=108.45 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred HHHHHhh---hcCCceeeccCcCCcccc--CCCC-----CCCeEEEEeCCHHHHHhcCC-------------CCcEEEec
Q 022305 129 PAIAALT---KYYSEVFPPSNTPGVSHF--PPGY-----KQDRIVGMGMNEEELKRNPV-------------LTEYVVQD 185 (299)
Q Consensus 129 ~~~~~l~---~~~~~vLDiGcG~G~~~~--~~~~-----~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D 185 (299)
.+++.+. +...+|||+|||+|.... .... +..+|+|+|+|+.+++.+++ +++++.+|
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 148 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN 148 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence 3445442 344689999999996222 2111 34699999999999987643 36788889
Q ss_pred cCCCCCCC----CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 186 LNLNPKLP----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 186 ~~~~~~lp----f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+ .... ..+++||+|++...++++ ++++.++|||||.+++.++.
T Consensus 149 ~---~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 149 I---YQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp G---GGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred h---HhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 8 5544 556789999999998876 48889999999999998763
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=111.17 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=72.2
Q ss_pred hcCCceeeccCcCCccccCCCCCCC-eEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQD-RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~-~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||+|...+.....+. +|+|+|+|+.|++.++++ ++++++|+ .+++. +++||+|++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~---~~~~~-~~~fD~Vi~~ 199 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPG-ENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCC-CSCEEEEEEC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH---HHhcc-cCCccEEEEC
Confidence 3457899999999975444333333 699999999999877642 66889998 66665 7889999986
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.. .+...+++++.++|||||.+++...
T Consensus 200 ~p----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 200 YV----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CC----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred Cc----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 33 4557899999999999998888644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=107.02 Aligned_cols=100 Identities=21% Similarity=0.192 Sum_probs=74.4
Q ss_pred HHHHHHhh---hcCCceeeccCcCCcccc--CCCCC------CCeEEEEeCCHHHHHhcCC-------------CCcEEE
Q 022305 128 DPAIAALT---KYYSEVFPPSNTPGVSHF--PPGYK------QDRIVGMGMNEEELKRNPV-------------LTEYVV 183 (299)
Q Consensus 128 ~~~~~~l~---~~~~~vLDiGcG~G~~~~--~~~~~------~~~v~gvD~S~~ml~~a~~-------------~~~~~~ 183 (299)
..+++.+. +...+|||+|||+|.... ..... ..+|+++|+++.+++.+++ +++++.
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 33455552 334689999999996222 11111 2599999999999987653 467888
Q ss_pred eccCCCCCCCCCC-CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 184 QDLNLNPKLPFED-NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 184 ~D~~~~~~lpf~~-~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|. .. ++++ ++||+|++..+++++. +++.++|||||.+++.+..
T Consensus 152 ~d~---~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 152 GDG---RK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SCG---GG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CCc---cc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 888 44 4444 7899999999999875 7899999999999998764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-11 Score=108.03 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeC-CHHHHHhcCCC------------------CcEEEeccCCC-CCCC--C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGM-NEEELKRNPVL------------------TEYVVQDLNLN-PKLP--F 194 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~-S~~ml~~a~~~------------------~~~~~~D~~~~-~~lp--f 194 (299)
..+|||+|||+|...+.....+ .+|+|+|+ |+.|++.++++ +++...|.... ..+. +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT 159 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence 4589999999997433322223 48999999 89999865443 33444443100 1111 0
Q ss_pred CCCCeeEEEecccccccCCHHHHHHHHHhhcc---C--CcEEEEEecC
Q 022305 195 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLK---P--GGLAIVSFSN 237 (299)
Q Consensus 195 ~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLk---p--GG~lii~~~~ 237 (299)
++++||+|++..+++|.++...+++++.++|| | ||.+++.+..
T Consensus 160 ~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 160 GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 46789999999999999999999999999999 9 9988776544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-11 Score=115.73 Aligned_cols=94 Identities=11% Similarity=-0.043 Sum_probs=70.0
Q ss_pred cCCceeeccCcCCccccCCC--CCCCeEEEEeCCHHHHHhc-------C----------CCCcEEEeccCCCCCC--CC-
Q 022305 137 YYSEVFPPSNTPGVSHFPPG--YKQDRIVGMGMNEEELKRN-------P----------VLTEYVVQDLNLNPKL--PF- 194 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~--~~~~~v~gvD~S~~ml~~a-------~----------~~~~~~~~D~~~~~~l--pf- 194 (299)
...+|||+|||+|...+... .+..+|+|+|+|+.+++.| + .+++++.+|. ... ++
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~---~~~~~~~~ 318 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS---FVDNNRVA 318 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC---STTCHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc---cccccccc
Confidence 44689999999997333222 2345899999999998776 3 2456777654 221 22
Q ss_pred -CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 195 -EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 195 -~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..++||+|+++.++ +.+++..+|+++.++|||||.+++.
T Consensus 319 ~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence 25789999998777 5578889999999999999999885
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=109.53 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=70.6
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|. .++.... ...+|+|+|+|+.+++.+++ +++++++|+ ..++..+++||+|++.
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIGELNVEFDKILLD 194 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGGGGCCCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh---hhcccccccCCEEEEe
Confidence 44689999999996 3333322 34799999999999987654 367888888 6666556789999973
Q ss_pred ------ccccccCCH----------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ------VSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ------~~l~~~~d~----------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++++.++. .++|+++.++|||||.+++++..
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 223332321 58899999999999999987543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-11 Score=114.08 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=73.5
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...... ..+..+|+|+|+|+ |++.+++ +++++.+|+ +.++++ ++||+|++..
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~-~~~D~Ivs~~ 124 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---EEVSLP-EQVDIIISEP 124 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEEECC
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcch---hhCCCC-CceeEEEEeC
Confidence 3468999999999733322 22346999999996 8776543 378899999 777765 5799999998
Q ss_pred cccccC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.++|+. +....+.++.++|||||.++++..
T Consensus 125 ~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (348)
T 2y1w_A 125 MGYMLFNERMLESYLHAKKYLKPSGNMFPTIG 156 (348)
T ss_dssp CBTTBTTTSHHHHHHHGGGGEEEEEEEESCEE
T ss_pred chhcCChHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 888774 567889999999999999987643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-11 Score=112.02 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=67.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----------CCcEE--EeccCCCCCCCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----------LTEYV--VQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~--~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|......... .+|+|+|+|+ |+..+++ +++++ ++|+ ..++ +++||+|+|.
T Consensus 83 g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~---~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV---TKME--PFQADTVLCD 155 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG---GGCC--CCCCSEEEEC
T ss_pred CCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH---hhCC--CCCcCEEEEC
Confidence 458999999999633222212 7899999999 7543321 36788 8888 6665 7899999998
Q ss_pred ccccccCCH----H---HHHHHHHhhccCCc--EEEEEecC
Q 022305 206 VSVDYLTKP----I---EVFKEMCQVLKPGG--LAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~d~----~---~~l~ei~rvLkpGG--~lii~~~~ 237 (299)
.+ ++..++ . .+|+++.++||||| .|++.+..
T Consensus 156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 77 554332 1 47999999999999 99987544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-11 Score=113.84 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=76.5
Q ss_pred cCCceeeccCcCCccccCCCC---CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY---KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~---~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
....|||+|||+|+..+.... +..+++|+|+|+.|++.|++ +++++++|+ .+++.+.+.||+|+++
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~---~~~~~~~~~~D~Ii~n 279 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA---RHLPRFFPEVDRILAN 279 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG---GGGGGTCCCCSEEEEC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh---hhCccccCCCCEEEEC
Confidence 346899999999984433222 45899999999999997765 378999999 7888777889999996
Q ss_pred cccccc--------CCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 206 VSVDYL--------TKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 206 ~~l~~~--------~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
--.... .....+++++.++|||||.+++.+++.
T Consensus 280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 433221 123678999999999999999987754
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-11 Score=107.81 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=72.7
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCCC--CCCeeEE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFE--DNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf~--~~~FD~V 202 (299)
...+|||+|||+|.. .+....++.+|+++|+|+.+++.+++ +++++.+|+ .. ++.. +++||+|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA---LQLGEKLELYPLFDVL 130 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG---GGSHHHHTTSCCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH---HHHHHhcccCCCccEE
Confidence 456899999999963 23333457899999999999987764 367788887 44 2433 5789999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++.... .+...+++++.++|||||.++++.
T Consensus 131 ~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 131 FIDAAK---GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEGGG---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred EECCCH---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 997664 478899999999999999999873
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=111.00 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=73.6
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCC--CCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP--FEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lp--f~~~~FD~Vis~ 205 (299)
...+|||+|||+|. .++....++.+|+|+|+|+.+++.+++ .++++++|+ ..++ +++++||+|++.
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl~D 322 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQWCGEQQFDRILLD 322 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHHHTTCCEEEEEEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch---hhchhhcccCCCCEEEEe
Confidence 44689999999996 333333345899999999999886654 267888998 6665 566889999952
Q ss_pred ------ccccccCCH----------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ------VSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ------~~l~~~~d~----------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++++.++. .++++++.++|||||.+++++..
T Consensus 323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 334444443 47899999999999999987643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-11 Score=113.87 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=72.8
Q ss_pred cCCceeeccCcCCc--cccCCCCCC-CeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQ-DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~-~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vi 203 (299)
...+|||+|||+|. .++....++ .+|+|+|+|+.+++.+++ +++++++|+ ..++ +++++||+|+
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA---RKAPEIIGEEVADKVL 335 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT---TCCSSSSCSSCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh---hhcchhhccCCCCEEE
Confidence 44689999999996 333333344 799999999999986543 367788888 6665 5567899999
Q ss_pred e------cccccccCCH----------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 204 N------VVSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s------~~~l~~~~d~----------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+ ..++++.++. .++|+++.++|||||.+++++..
T Consensus 336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 5 2344444443 57899999999999999887653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-11 Score=106.75 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=71.4
Q ss_pred cCCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC-C-CC----CCC
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FE----DNS 198 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l-p-f~----~~~ 198 (299)
...+|||+|||+|.. .+....+ +.+|+++|+|+.|++.+++ +++++++|+ ... + +. .++
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA---KDTLAELIHAGQAWQ 140 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHHHHTTTCTTC
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH---HHHHHHhhhccCCCC
Confidence 346899999999963 3344444 7899999999999987654 277888887 332 2 11 178
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
||+|++... ..+...+++++.++|||||.+++...
T Consensus 141 fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 141 YDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999996653 45678899999999999999998743
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-11 Score=106.33 Aligned_cols=89 Identities=10% Similarity=0.247 Sum_probs=68.9
Q ss_pred ceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCC-CC-CCCCCeeEEEe
Q 022305 140 EVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPK-LP-FEDNSFDVITN 204 (299)
Q Consensus 140 ~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~-lp-f~~~~FD~Vis 204 (299)
+|||+|||+|...+ .... ++++|+++|+|++|++.|++ +++++.+|+ .+ ++ +++++||+|++
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda---~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP---LDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH---HHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH---HHHHHHhcCCCcCeEEE
Confidence 89999999996333 2222 36899999999999987653 367888887 33 33 34789999998
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
... ..+...+++++.++|||||.+++.
T Consensus 136 d~~---~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 136 QVS---PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp CCC---TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred cCc---HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 753 456778999999999999999985
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-11 Score=104.05 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=71.2
Q ss_pred cCCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC-C-CC---CCCe
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FE---DNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l-p-f~---~~~F 199 (299)
...+|||+|||+|.. .+....+ +.+|+|+|+++.+++.+++ +++++++|+ ... + +. .++|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA---LDSLQQIENEKYEPF 134 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHHHHHTTCCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHHHHhcCCCCc
Confidence 457899999999963 3344444 6899999999999987654 377888887 332 2 11 2679
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+|++... ..+...+++++.++|||||.+++...
T Consensus 135 D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 135 DFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99998765 34667899999999999998888643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-12 Score=110.41 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=71.5
Q ss_pred cCCceeeccCcCCccc--cCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC-CCC-----CCC
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-PFE-----DNS 198 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l-pf~-----~~~ 198 (299)
...+|||+|||+|... ++...+ +++|+++|+|++|++.|++ +++++++|+ ... +.. +++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda---~~~l~~~~~~~~~~~ 136 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA---LDTLHSLLNEGGEHQ 136 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH---HHHHHHHHHHHCSSC
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHHHhhccCCCC
Confidence 3578999999999633 333333 6899999999999886654 378889988 433 321 578
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
||+|++... ..+...+++++.++|||||.++++.
T Consensus 137 fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 137 FDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 999998754 4567889999999999999999863
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=101.78 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=72.0
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCC-CCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~-lpf~~~~FD~ 201 (299)
...+|||+|||+|.. .+....+..+|+++|+++.|++.+++ +++++.+|+ .. ++..+++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~---~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG---FMHIAKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS---HHHHHTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH---HHHHhhCCCCeeE
Confidence 357899999999962 22333345799999999999986653 367888887 33 3444678999
Q ss_pred EEecccccccCC----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~d----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++....++.+. ..++++++.++|||||.+++...+
T Consensus 152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999654332221 268999999999999999997544
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=104.31 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=71.7
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCC-CCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~-lpf~~~~FD~ 201 (299)
...+|||+|||+|. ..+....+..+|+++|+|+.|++.+++ +++++.+|+ .. ++..+++||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA---SKFLENVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH---HHHHHHCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccH---HHHHhhcCCCceE
Confidence 34789999999996 233333356899999999999986543 367788887 33 3334678999
Q ss_pred EEecccccc--cCCH--HHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDY--LTKP--IEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~--~~d~--~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|++...-.+ ..+. .++++++.++|||||.+++...+.
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 998653221 1122 789999999999999999976543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=104.39 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=71.9
Q ss_pred cCCceeeccCcCCccc--cCCCCCC-CeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCC----CCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYKQ-DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF----EDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~~-~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf----~~~~FD~ 201 (299)
...+|||+|||+|... +....++ .+|+|+|+|+.+++.+++ +++++.+|+ ..++. .+++||+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADM---RKYKDYLLKNEIFFDK 159 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH---HHHHHHHHHTTCCEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh---HhcchhhhhccccCCE
Confidence 3468999999999633 3333344 799999999999986554 367888888 55554 3678999
Q ss_pred EEec------cccc------------ccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNV------VSVD------------YLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~------~~l~------------~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++. .++. ......++++++.++|||||.+++++..
T Consensus 160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 9976 1121 1245678999999999999999987654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-10 Score=106.43 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=72.0
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCC-C-CCCCCee
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL-P-FEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~l-p-f~~~~FD 200 (299)
...+|||+|||+|. ..+....+..+|+++|+|+.|++.|++ +++++.+|+ ... + +++++||
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~---~~~l~~~~~~~fD 196 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG---VAFLKNAAEGSYD 196 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH---HHHHHTSCTTCEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCH---HHHHHhccCCCcc
Confidence 35689999999996 333333456899999999999986653 367888887 432 2 3467899
Q ss_pred EEEecccccc--cCC--HHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVSVDY--LTK--PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~--~~d--~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|++.....+ ..+ ...+++++.++|||||.+++...+
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9998654221 122 378999999999999999997443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=8e-11 Score=102.95 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=71.9
Q ss_pred cCCceeeccCcCCccc--cCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCC-CCCCCCCC--CCeeE
Q 022305 137 YYSEVFPPSNTPGVSH--FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNL-NPKLPFED--NSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~--~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~-~~~lpf~~--~~FD~ 201 (299)
...+|||+|||+|... +....+ +.+++++|+|+.+++.|++ +++++.+|+.. ...++.++ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 3468999999999632 333333 6799999999999987764 36788888620 01233334 78999
Q ss_pred EEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 202 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 202 Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|++... ..+...+++++.++|||||.+++...
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 998754 35678899999999999999998743
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-11 Score=107.33 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=66.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeC----CHHHHHhcC------CCCcEEEe-ccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGM----NEEELKRNP------VLTEYVVQ-DLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~----S~~ml~~a~------~~~~~~~~-D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|......... .+|+|+|+ ++.+++... ..+.++++ |+ ..++ +++||+|+|..
T Consensus 83 g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~---~~l~--~~~fD~V~sd~ 156 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV---FFIP--PERCDTLLCDI 156 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT---TTSC--CCCCSEEEECC
T ss_pred CCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccc---ccCC--cCCCCEEEECC
Confidence 468999999999632222212 58999999 665554322 23677777 77 5554 56899999976
Q ss_pred ccc---ccCCHH---HHHHHHHhhccCCcEEEEEecCc
Q 022305 207 SVD---YLTKPI---EVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 207 ~l~---~~~d~~---~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+++ +..|.. .+|+++.++|||||.|++.+...
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 653 332332 58999999999999999976654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.1e-11 Score=106.07 Aligned_cols=94 Identities=9% Similarity=0.151 Sum_probs=70.4
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCe---eEE
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSF---DVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~F---D~V 202 (299)
...+|||+|||+|...+ ... ++.+|+|+|+|+.|++.|+++ ++++++|+ .. +++ ++| |+|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~---~~-~~~-~~f~~~D~I 196 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF---LE-PFK-EKFASIEMI 196 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST---TG-GGG-GGTTTCCEE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc---hh-hcc-cccCCCCEE
Confidence 34689999999997332 333 678999999999999977652 77899998 43 232 578 999
Q ss_pred Eec------------ccccccC--------CHHHHHHHHH-hhccCCcEEEEEecC
Q 022305 203 TNV------------VSVDYLT--------KPIEVFKEMC-QVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~------------~~l~~~~--------d~~~~l~ei~-rvLkpGG~lii~~~~ 237 (299)
+++ .+. |-+ |...+++++. +.|||||.++++++.
T Consensus 197 vsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 197 LSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp EECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred EEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 997 222 222 2337899999 999999999998654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-11 Score=106.76 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CCC------CCCC
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPF------EDNS 198 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lpf------~~~~ 198 (299)
..+|||+|||+|...+ ....+ +.+|+++|+|+.|++.+++ +++++.+|. .. ++. ++++
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda---~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA---LPVLDEMIKDEKNHGS 156 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHSGGGTTC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHHHHHHHhccCCCCC
Confidence 4689999999997333 22333 6899999999999987764 367888887 33 232 2678
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
||+|++... ..+...+++++.++|||||.++++.
T Consensus 157 fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 999998753 4577899999999999999998863
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-11 Score=113.59 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCCC----CCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPF----EDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lpf----~~~~FD~Vi 203 (299)
..+|||+|||+|...+.....+.+|+|+|+|+.|++.++++ ++++++|+ .++.. .+++||+|+
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~---~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA---MKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH---HHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcH---HHHHHHHHhcCCCceEEE
Confidence 45899999999974444333456999999999999877642 57888887 44321 157899999
Q ss_pred ecc----------cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NVV----------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~~----------~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+.- ++++..+...+++++.++|||||.++++..+
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 842 2334556789999999999999998887654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.01 E-value=8e-11 Score=107.95 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=71.4
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC--CCCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l--pf~~~~FD~Vis~~ 206 (299)
.+|||+|||.|. ..+...+++.++++||+++.|++.+++ +++++++|. ..+ .+++++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da---~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDA---RMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCH---HHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcH---HHHHhhccCCCCCEEEECC
Confidence 389999999996 223333567899999999999998764 367888887 443 24568999999864
Q ss_pred ccccc-C---CHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYL-T---KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~-~---d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
..++. + ...+++++++++|||||.+++...
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 33321 1 126899999999999999988754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-11 Score=114.08 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=72.3
Q ss_pred CCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|...+. ...+..+|+|+|+|+ |++.|++ +++++.+|+ ++++++ ++||+|+|...
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~---~~~~~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---EEVSLP-EQVDIIISEPM 233 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEECCCC
T ss_pred CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECch---hhCccC-CCeEEEEEeCc
Confidence 46899999999973322 223456999999998 8876643 378999999 676665 57999999888
Q ss_pred ccccC--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 208 VDYLT--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 208 l~~~~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++|+. +....+.++.++|||||.++++.
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 77775 34678889999999999998654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.5e-10 Score=101.95 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=68.7
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------------CCcEEEeccCCCCC-CCCC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------------LTEYVVQDLNLNPK-LPFE 195 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------------~~~~~~~D~~~~~~-lpf~ 195 (299)
...+|||+|||+|. ..+... +..+++++|+++.|++.|++ +++++.+|+ .. ++.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~---~~~l~~- 149 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG---FEFIKN- 149 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH---HHHHHH-
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECch---HHHhcc-
Confidence 34789999999996 223333 56799999999999986542 356777876 32 233
Q ss_pred CCCeeEEEecccccccC--C--HHHHHHHHHhhccCCcEEEEEec
Q 022305 196 DNSFDVITNVVSVDYLT--K--PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~--d--~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+++||+|++....++-+ . ..++++++.++|||||.+++...
T Consensus 150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 67899999865432211 1 26789999999999999998754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=106.21 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=72.7
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCC-CCCCCCCee
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPK-LPFEDNSFD 200 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~-lpf~~~~FD 200 (299)
...+|||+|||+|. ..+....+..+++++|+++.|++.+++ +++++.+|+ .. ++..+++||
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fD 153 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA---RAYLERTEERYD 153 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH---HHHHHHCCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchH---HHHHHhcCCCcc
Confidence 45789999999996 333333356799999999999986543 367888887 44 344578899
Q ss_pred EEEecccccc-cCC------HHHHHHHHHhhccCCcEEEEEec
Q 022305 201 VITNVVSVDY-LTK------PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 201 ~Vis~~~l~~-~~d------~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+|++....++ ... ..++++++.++|||||.+++...
T Consensus 154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999866544 111 37899999999999999988643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-10 Score=101.20 Aligned_cols=88 Identities=16% Similarity=0.024 Sum_probs=68.9
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
...+|||+|||+|.. .+... + .+|+++|+++.|++.|++. ++++.+|. .... ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~---~~~~---~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL---DLDI---KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG---GSCC---CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH---HHHH---hhCCEE
Confidence 346899999999862 23333 5 8999999999999988753 45667777 4433 789999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++. ..++..+++++.++|||||.+++...+
T Consensus 144 i~d-----~~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 144 FCL-----QEPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp EES-----SCCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEC-----CCChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 986 356777999999999999999987544
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=103.71 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=70.0
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCC-CCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~-lpf~~~~FD~ 201 (299)
...+|||+|||+|. ..+....+..+|+++|+|+.+++.+++ +++++.+|+ .. ++..+++||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG---AEYVRKFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHGGGCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH---HHHHhhCCCCceE
Confidence 34789999999996 233333356899999999999986543 367788887 33 3445678999
Q ss_pred EEecccccccC-----CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLT-----KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~-----d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++...-+++. ...++++++.++|||||.+++...+
T Consensus 167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99854322121 2278999999999999999997654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=96.87 Aligned_cols=83 Identities=7% Similarity=0.126 Sum_probs=62.1
Q ss_pred cCCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||+|........ ...+|+|+|+|+.|++.+++ +++++++|+ ..++ ++||+|+++..++|..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~---~~~~---~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---SEIS---GKYDTWIMNPPFGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---GGCC---CCEEEEEECCCC----
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcH---HHCC---CCeeEEEECCCchhcc
Confidence 446899999999973332221 33579999999999998776 488999999 6654 6899999999999986
Q ss_pred C--HHHHHHHHHhhc
Q 022305 213 K--PIEVFKEMCQVL 225 (299)
Q Consensus 213 d--~~~~l~ei~rvL 225 (299)
+ ..++++++.++|
T Consensus 125 ~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS 139 (200)
T ss_dssp ---CHHHHHHHHHHE
T ss_pred CchhHHHHHHHHHhc
Confidence 4 357899999998
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=104.13 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=72.0
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCC-CCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~-lpf~~~~FD~ 201 (299)
...+|||+|||.|. ..+....+..+++++|+++.+++.+++ +++++.+|+ .. ++..+++||+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA---SKFLENVTNTYDV 154 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH---HHHHHHCCSCEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh---HHHHHhCCCCceE
Confidence 34689999999996 233333346899999999999986543 357888887 33 2333678999
Q ss_pred EEecccccccC--CH--HHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLT--KP--IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~--d~--~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++....++.+ +. .++++++.++|||||.+++...+
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99865433322 22 68999999999999999997654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-10 Score=103.50 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=65.8
Q ss_pred CCceeeccCcC------CccccCCCCC-CCeEEEEeCCHHHHHhcCCCCcE-EEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTP------GVSHFPPGYK-QDRIVGMGMNEEELKRNPVLTEY-VVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~------G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~~~~-~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+ |...+....+ +.+|+|+|+|+. + .++++ +++|+ ..++++ ++||+|+|+...+
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----~~v~~~i~gD~---~~~~~~-~~fD~Vvsn~~~~ 134 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----SDADSTLIGDC---ATVHTA-NKWDLIISDMYDP 134 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----CSSSEEEESCG---GGCCCS-SCEEEEEECCCCC
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----CCCEEEEECcc---ccCCcc-CcccEEEEcCCcc
Confidence 45899999965 4311222223 589999999998 2 35889 99999 677664 6799999975422
Q ss_pred c-----------cCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 210 Y-----------LTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 210 ~-----------~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+ ......+++++.|+|||||.|++.+.
T Consensus 135 ~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 135 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp C---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2 11235899999999999999999754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=108.08 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=70.4
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec--
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV-- 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~-- 205 (299)
-+.|||+|||+|...+.....+ .+|+|||.|+ |++.|++ +++++.+|+ +.+.++ ++||+|+|-
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~---~~~~lp-e~~DvivsE~~ 158 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPV---ETVELP-EQVDAIVSEWM 158 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEECCCC
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeee---eeecCC-ccccEEEeecc
Confidence 3579999999997433333334 5899999996 7776543 388999999 778776 579999984
Q ss_pred -ccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 206 -VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 206 -~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..+.+-.....++....|.|||||.++-+
T Consensus 159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 159 GYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp BTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccccchhhhHHHHHHhhCCCCceECCc
Confidence 44555567899999999999999988643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-10 Score=104.50 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=72.8
Q ss_pred cCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...+.... +..+|+|+|+|+.|++.+++ ++.++.+|+ ..++. +++||+|++..
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~---~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN---RDVEL-KDVADRVIMGY 194 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG---GGCCC-TTCEEEEEECC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh---HHcCc-cCCceEEEECC
Confidence 346899999999974443322 35699999999999987764 367899999 55544 67899999886
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.. +..+++.++.++|||||.++++...
T Consensus 195 p~----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 195 VH----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp CS----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cc----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 43 6778999999999999999887543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-10 Score=104.95 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=70.0
Q ss_pred cCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCC-CCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~-lpf~~~~FD~ 201 (299)
...+|||+|||+|.. .+....+..+++++|+++.|++.+++ +++++.+|+ .. ++..+++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da---~~~l~~~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG---FEFMKQNQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHHHTCSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH---HHHHhhCCCCceE
Confidence 346899999999963 33333345899999999999986653 367788887 33 3445688999
Q ss_pred EEecccccccC----CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++....+..+ ...++++++.++|||||.+++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99865433221 1257899999999999999987643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-10 Score=106.72 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=69.5
Q ss_pred hcCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
....+|||+|||+|+..+.... ...+|+|+|+|+.|++.|++ +++++++|+ .++++++++||+|++
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~---~~~~~~~~~fD~Ii~ 292 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA---TQLSQYVDSVDFAIS 292 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG---GGGGGTCSCEEEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCCcccCCcCEEEE
Confidence 3456899999999974433222 23489999999999997764 378999999 888888899999999
Q ss_pred cccccc-------cCCH-HHHHHHHHhhccCCcEEEEEec
Q 022305 205 VVSVDY-------LTKP-IEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 205 ~~~l~~-------~~d~-~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+-.+.. +.+. .++++++.|+| ||.+++.++
T Consensus 293 npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 293 NLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp ECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 744222 2222 67889999999 454444444
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-10 Score=105.11 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=68.3
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCC-CCCCCCCeeE
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~-lpf~~~~FD~ 201 (299)
...+|||+|||+|. ..+....+..+|+++|+++.|++.|++ +++++.+|+ .. ++..+++||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~---~~~l~~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG---FEFLKNHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH---HHHHHHCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChH---HHHHHhcCCCceE
Confidence 34789999999996 333333456899999999999986543 256777777 33 3345688999
Q ss_pred EEecccccccCC--H--HHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVVSVDYLTK--P--IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~~l~~~~d--~--~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++...-+.-+. . .++++++.++|||||.+++...+
T Consensus 185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 998653222121 1 68899999999999999997543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-10 Score=102.22 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=70.3
Q ss_pred cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCC-CC----------
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LP---------- 193 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~-lp---------- 193 (299)
...+|||+|||+|.... ....+ +.+|+++|+++.+++.++++ ++++.+|+ .. ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA---LETLQVLIDSKSAPS 136 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHCSSCCG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH---HHHHHHHHhhccccc
Confidence 45789999999996332 22233 67999999999999877652 67888886 22 22
Q ss_pred ----CCC--CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 194 ----FED--NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 194 ----f~~--~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|++ ++||+|++... ..+...+++++.++|||||.+++..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999998854 3456789999999999999999864
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-10 Score=108.78 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=70.8
Q ss_pred cCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCC-CCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-FEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lp-f~~~~FD~Vis~ 205 (299)
...+|||+|||+|. .+++...+ .++|+++|+|+.+++.++++ +.++.+|+ ..++ +.+++||+|++.
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da---~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPP---RALAEAFGTYFHRVLLD 177 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCH---HHHHHHHCSCEEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCH---HHhhhhccccCCEEEEC
Confidence 45689999999996 33333333 37999999999999877653 66777887 5554 346889999951
Q ss_pred ------ccccccCCH----------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 206 ------VSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ------~~l~~~~d~----------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.++.+-++. .++|+++.++|||||.+++++..
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 223222322 67899999999999999987643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.8e-11 Score=103.96 Aligned_cols=135 Identities=5% Similarity=-0.041 Sum_probs=79.7
Q ss_pred CCceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCC---CCC---CCCee
Q 022305 138 YSEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL---PFE---DNSFD 200 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~l---pf~---~~~FD 200 (299)
..+|||+|||+|... +....++.+|+|+|+|+.|++.|+++ ++++++|+ ... +++ +++||
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ---KTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TCSSTTTSTTCCSCCBS
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcch---hhhhhhhhhcccCCccc
Confidence 358999999999632 22223468999999999999877542 68899997 441 344 36899
Q ss_pred EEEecccccccC---------------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhh-------cCCCchhh
Q 022305 201 VITNVVSVDYLT---------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS-------TGDADHVM 258 (299)
Q Consensus 201 ~Vis~~~l~~~~---------------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~-------~~~~~~~~ 258 (299)
+|+++-.+++.. ....++.+++|+|||||.+.+... ........... .+......
T Consensus 143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~ 219 (254)
T 2h00_A 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR---IIHDSLQLKKRLRWYSCMLGKKCSLA 219 (254)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHH---HHHHHHHHGGGBSCEEEEESSTTSHH
T ss_pred EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH---HHHHHHhcccceEEEEECCCChhHHH
Confidence 999985444332 112457889999999997654311 11111111111 11112222
Q ss_pred hHHHHHHHhCCCCCCeeeecC
Q 022305 259 IVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 259 ~~~~~~~~~aGF~~v~~~~~~ 279 (299)
.+.+.+ +++||+.+++....
T Consensus 220 ~~~~~l-~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 220 PLKEEL-RIQGVPKVTYTEFC 239 (254)
T ss_dssp HHHHHH-HHTTCSEEEEEEEE
T ss_pred HHHHHH-HHcCCCceEEEEEe
Confidence 333344 56999999887765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-10 Score=98.80 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=70.1
Q ss_pred cCCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCC-C-CC--C--CC
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FE--D--NS 198 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~l-p-f~--~--~~ 198 (299)
...+|||+|||+|.. .+....+ +.+++++|+|+.+++.+++ +++++.+|+ ... + +. . ++
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~---~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA---LETLDELLAAGEAGT 145 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHHHHHTTCTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH---HHHHHHHHhcCCCCC
Confidence 346899999999963 3333333 6899999999999987653 367888887 322 1 21 1 78
Q ss_pred eeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 199 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 199 FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
||+|++... ..+...+++++.++|||||.+++..
T Consensus 146 ~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 146 FDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 999998654 4467889999999999999998863
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=103.33 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=71.1
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCC-CCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF-EDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf-~~~~FD~Vis 204 (299)
...+|||+|||+|. .+++... ....|+++|+|+.+++.+++ +++++++|+ ..++. .+++||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~---~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG---RVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCS---TTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHhhhhccccCCEEEE
Confidence 45689999999996 3333332 24799999999999987654 366788888 66653 5678999997
Q ss_pred c------ccccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 V------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~------~~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. .++.+.++ ..++|+++.++|||||.+++++..
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 2 22332222 246899999999999999987653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-10 Score=101.67 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=70.6
Q ss_pred cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CC-C-----CCC
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LP-F-----EDN 197 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lp-f-----~~~ 197 (299)
...+|||+|||+|...+ ....+ +.+++++|+|+.+++.+++ +++++.+|. .. ++ + +++
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda---~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA---MLALDNLLQGQESEG 146 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHSTTCTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHHHHhccCCCC
Confidence 34689999999997333 23333 6899999999999987754 367888887 33 22 2 257
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+||+|++... ..+...+++++.++|||||.++++.
T Consensus 147 ~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 147 SYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 8999998642 3467889999999999999998863
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-10 Score=103.43 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=72.6
Q ss_pred CCceeeccCcCCccccCCC--CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCC-CCC-CCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPG--YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPF-EDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~--~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~-lpf-~~~~FD~Vis~ 205 (299)
..+|||+| |+|....... .+..+|+|+|+|+.|++.+++ +++++.+|+ .. +|. .+++||+|+++
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDL---RKPLPDYALHKFDTFITD 248 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCT---TSCCCTTTSSCBSEEEEC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChh---hhhchhhccCCccEEEEC
Confidence 46899999 9997333222 234799999999999997765 377899998 55 664 45789999998
Q ss_pred ccccccCCHHHHHHHHHhhccCCc-EEEEEecC
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSN 237 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG-~lii~~~~ 237 (299)
..+++. ....+++++.++||||| .+++++..
T Consensus 249 ~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 249 PPETLE-AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp CCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred CCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 655443 35889999999999999 55777665
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=95.98 Aligned_cols=120 Identities=8% Similarity=-0.084 Sum_probs=83.0
Q ss_pred hcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|+|+|||+|...+. ...+..+|+++|+++.+++.|+++ +++..+|. .....+++.||+|+.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~---l~~~~~~~~~D~Ivi 96 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG---LSAFEEADNIDTITI 96 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccccccccCEEEE
Confidence 3446899999999973332 233456899999999999987652 78899998 444444457999886
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
....- .-...++.+..+.|+++|.||++-.. +...+.+++ .+.||..++..-+.
T Consensus 97 aGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~------------------~~~~lr~~L-~~~Gf~i~~E~lv~ 150 (230)
T 3lec_A 97 CGMGG--RLIADILNNDIDKLQHVKTLVLQPNN------------------REDDLRKWL-AANDFEIVAEDILT 150 (230)
T ss_dssp EEECH--HHHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred eCCch--HHHHHHHHHHHHHhCcCCEEEEECCC------------------ChHHHHHHH-HHCCCEEEEEEEEE
Confidence 54332 23567888999999999999997321 122344445 34789877765544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-11 Score=107.58 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC------CcEEEeccCCCCCCCCCC-CCeeE
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFED-NSFDV 201 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~------~~~~~~D~~~~~~lpf~~-~~FD~ 201 (299)
+++.+. ....+|||+|||+|.........+.+|+|+|+|+.|++.++++ ++++++|+ .++++++ ++| .
T Consensus 21 i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~---~~~~~~~~~~f-~ 96 (245)
T 1yub_A 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI---LQFQFPNKQRY-K 96 (245)
T ss_dssp HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC---TTTTCCCSSEE-E
T ss_pred HHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECCh---hhcCcccCCCc-E
Confidence 344442 2346899999999974443333358999999999999988764 57788898 7788764 688 6
Q ss_pred EEecc-----------cccccCCHHHHH----HHHHhhccCCcEEEEE
Q 022305 202 ITNVV-----------SVDYLTKPIEVF----KEMCQVLKPGGLAIVS 234 (299)
Q Consensus 202 Vis~~-----------~l~~~~d~~~~l----~ei~rvLkpGG~lii~ 234 (299)
|+++. .+.|..+...++ +.+.|+|||||.+.+.
T Consensus 97 vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 97 IVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp EEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred EEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 66652 122333444555 7799999999977654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.2e-10 Score=102.46 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=62.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++.+|+ .+++++ +||+|+++..
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~---~~~~~~--~fD~vv~nlp 102 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---LKTDLP--FFDTCVANLP 102 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---TTSCCC--CCSEEEEECC
T ss_pred CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce---ecccch--hhcEEEEecC
Confidence 34689999999997444433335799999999999986543 367899999 666664 7999999754
Q ss_pred ccc-----------cCCHHHHH----HHH--HhhccCCcEE
Q 022305 208 VDY-----------LTKPIEVF----KEM--CQVLKPGGLA 231 (299)
Q Consensus 208 l~~-----------~~d~~~~l----~ei--~rvLkpGG~l 231 (299)
.++ .+++..++ +|+ .++|||||.+
T Consensus 103 y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 103 YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 433 33322111 344 4799999965
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-09 Score=89.51 Aligned_cols=90 Identities=7% Similarity=0.045 Sum_probs=66.6
Q ss_pred CCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|........ ...+++|+|+|+.|++.+++ +++++.+|+ ..++ ++||+|+++..++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGCC---CCCSEEEECCCCS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECch---HHcC---CCCCEEEEcCCCc
Confidence 46899999999973332222 23479999999999987665 367889998 5554 4899999998777
Q ss_pred ccC--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 210 YLT--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 210 ~~~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+.. ....+++++.++| ||.+++.+
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~ 149 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHL 149 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEe
Confidence 664 3467899999998 66554443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-09 Score=94.72 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=71.7
Q ss_pred CCceeeccCcCCccccCC--CCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..+|||+|||.|...+.. ..+..+++++|+++.|++.++.+ .++.+.|. . ...+...||+|+++-++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~---~-~~~p~~~~DvaL~lkti 208 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADL---L-EDRLDEPADVTLLLKTL 208 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT---T-TSCCCSCCSEEEETTCH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee---c-ccCCCCCcchHHHHHHH
Confidence 569999999999744432 23678999999999999977653 56777886 3 33356789999999999
Q ss_pred cccCCHH--HHHHHHHhhccCCcEEEEEecC
Q 022305 209 DYLTKPI--EVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 209 ~~~~d~~--~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+++-. ..+ ++...|+|+|.+ ++++.
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vv-VSfp~ 237 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIV-VTFPT 237 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEE-EEEEC
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEE-Eeccc
Confidence 9997542 344 899999999955 45554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=8e-10 Score=104.40 Aligned_cols=99 Identities=10% Similarity=0.013 Sum_probs=70.0
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCC-CCCCCCeeEEEeccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL-PFEDNSFDVITNVVS 207 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~l-pf~~~~FD~Vis~~~ 207 (299)
+...+|||+|||+|...+.....++.|+|+|+|+.|++.++++ .++.++|+ .++ +...+.||+|++.--
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~---~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEA---LPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCH---HHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccH---HHHHHHhcCCCCEEEECCC
Confidence 3356899999999975554444467799999999999987764 35777887 332 222344999998632
Q ss_pred c---------cccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 208 V---------DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 208 l---------~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
. ....+..++++++.++|||||.+++...+
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 11234568899999999999988865443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-09 Score=95.45 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=73.1
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||.|...++.. +..+++|+||++.|++.+++. ..+.++|. ...+.+ ++||+|++.-++|
T Consensus 105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~---~~~~~~-~~~DvvLllk~lh 179 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDV---LCAPPA-EAGDLALIFKLLP 179 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT---TTSCCC-CBCSEEEEESCHH
T ss_pred CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec---ccCCCC-CCcchHHHHHHHH
Confidence 35699999999997555433 788999999999999987653 56788898 555654 4899999999999
Q ss_pred ccCCH-HHHHHHHHhhccCCcEEEEEecC
Q 022305 210 YLTKP-IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 210 ~~~d~-~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+++. ....-++...|+++| +++++|.
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~-vvVsfPt 207 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPR-MAVSFPT 207 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSE-EEEEEEC
T ss_pred HhhhhchhhHHHHHHHhcCCC-EEEEcCh
Confidence 99643 233448888999997 5566664
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=100.88 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=72.1
Q ss_pred CCceeeccCcCCccccCC--CCC-----CCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPP--GYK-----QDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~~~-----~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
..+|||+|||+|...... ..+ ..+++|+|+++.+++.|+.+ ++++.+|. .. +..+++||+|+
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~---l~-~~~~~~fD~Ii 206 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG---LA-NLLVDPVDVVI 206 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT---TS-CCCCCCEEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCC---CC-ccccCCccEEE
Confidence 468999999999732211 111 26899999999999887652 67888887 33 33467899999
Q ss_pred ecccccccCCHH------------------HHHHHHHhhccCCcEEEEEecCc
Q 022305 204 NVVSVDYLTKPI------------------EVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 204 s~~~l~~~~d~~------------------~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++--+.++++.. .+++++.+.|||||.+++.+++.
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 997766654322 57999999999999999888753
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.7e-10 Score=103.81 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=70.4
Q ss_pred cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCC-CCC---CCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPK-LPF---EDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~-lpf---~~~~FD~ 201 (299)
...+|||+|||+|...+.....+ .+|+|+|+|+.|++.|++ +++++++|+ .+ ++. ..++||+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~---~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV---FDYFKYARRHHLTYDI 288 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH---HHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH---HHHHHHHHHhCCCccE
Confidence 34689999999998544433333 489999999999987654 357888887 33 221 2468999
Q ss_pred EEecccc-----ccc----CCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSV-----DYL----TKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l-----~~~----~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|++.--. .+. .+..++++++.++|||||.++++....
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9984211 223 345567888899999999999986554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-10 Score=105.14 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=72.4
Q ss_pred cCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCC----CCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF----EDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf----~~~~FD~V 202 (299)
...+|||+|||+|...+..... ..+|+|+|+|+.+++.+++ +++++.+|+ ..+.. ++++||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~---~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA---FEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCH---HHHHHHHHhhCCCCCEE
Confidence 4468999999999744433323 3589999999999987654 367888887 44321 35789999
Q ss_pred Eecc---------cccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 203 TNVV---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 203 is~~---------~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++.- +.++..+...++.++.++|||||.+++...+.
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 9852 22233566789999999999999888876553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.7e-10 Score=112.25 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=74.2
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCC-CCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPK-LPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~-lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|...+.....+ .+|+++|+|+.|++.+++ +++++++|+ .+ ++..+++||+|++.
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~---~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADC---LAWLREANEQFDLIFID 616 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCH---HHHHHHCCCCEEEEEEC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH---HHHHHhcCCCccEEEEC
Confidence 4689999999997444333234 469999999999987654 367888998 43 44556889999985
Q ss_pred c-----------cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 V-----------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~-----------~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
- ++++..+..++++++.++|||||.++++...
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3 3444567788999999999999999988764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-09 Score=102.90 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=68.6
Q ss_pred cCCceeeccCcCCc--cccCCCCC-CCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCC-CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~-~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lp-f~~~~FD~Vis 204 (299)
...+|||+|||+|. .+++.... ...|+++|+|+.+++.++++ +.++.+|. ..++ ..+++||+|++
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da---~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP---AELVPHFSGFFDRIVV 181 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH---HHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhhhccccCCEEEE
Confidence 45689999999996 33333223 47999999999999876542 56677787 5554 34678999996
Q ss_pred cc------cccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 VV------SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ~~------~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.- ++.+-++ ..++|+++.++|||||.++.++..
T Consensus 182 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 182 DAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp ECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 31 1211111 127899999999999999987653
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.9e-10 Score=105.30 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=71.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCC----CCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPF----EDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf----~~~~FD~Vis~ 205 (299)
..+|||+|||+|...+.......+|+|+|+|+.+++.++++ ++++.+|+ ..+.. ++++||+|++.
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~---~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA---FDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH---HHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCH---HHHHHHHHhcCCCeeEEEEC
Confidence 35799999999974433322257899999999999877653 67888888 44321 25789999984
Q ss_pred c---------cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 V---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~---------~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
- ......+...++.++.++|||||.++++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 1222245678999999999999999987654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-09 Score=94.93 Aligned_cols=95 Identities=6% Similarity=-0.097 Sum_probs=69.3
Q ss_pred hhcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 135 TKYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
.+...+|||+|||+|...+. ...+..+|+|+|+++.+++.|+++ +++..+|. .....++++||+|+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~---l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG---LAVIEKKDAIDTIV 95 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGCCCEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch---hhccCccccccEEE
Confidence 33446899999999973332 233456899999999999987653 67888998 44444444699988
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+....- .-...++.+..+.|+++|.||++
T Consensus 96 iagmGg--~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 96 IAGMGG--TLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp EEEECH--HHHHHHHHHTGGGGTTCCEEEEE
T ss_pred EeCCch--HHHHHHHHHHHHHhCCCCEEEEE
Confidence 654322 22567889999999999999997
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-09 Score=95.88 Aligned_cols=88 Identities=8% Similarity=0.045 Sum_probs=68.4
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|...+. .....+|+|+|+|+.+++.+++ +++++.+|+ ..+. ++||+|++.--
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~---~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV---REVD---VKGNRVIMNLP 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG---GGCC---CCEEEEEECCT
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh---HHhc---CCCcEEEECCc
Confidence 346899999999985555 4467899999999999987654 367889998 5544 78999998631
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
. ....+++++.++|+|||.+++..
T Consensus 268 -~---~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 268 -K---FAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp -T---TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred -H---hHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 22378999999999999887753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-09 Score=92.35 Aligned_cols=120 Identities=8% Similarity=-0.067 Sum_probs=80.5
Q ss_pred hcCCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|||+|||+|...+. ...+..+|+++|+++.+++.|+++ +++..+|.. +.++. ...||+|+.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l--~~l~~-~~~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL--AAFEE-TDQVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG--GGCCG-GGCCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh--hhccc-CcCCCEEEE
Confidence 3446899999999973332 333456899999999999987653 678888872 22332 126999886
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecC
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 279 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~ 279 (299)
...-- .-...++.+..+.|+|+|++|++-.. +...+.+++ ...||..++..-+.
T Consensus 91 aG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~~------------------~~~~vr~~L-~~~Gf~i~~e~lv~ 144 (225)
T 3kr9_A 91 AGMGG--RLIARILEEGLGKLANVERLILQPNN------------------REDDLRIWL-QDHGFQIVAESILE 144 (225)
T ss_dssp EEECH--HHHHHHHHHTGGGCTTCCEEEEEESS------------------CHHHHHHHH-HHTTEEEEEEEEEE
T ss_pred cCCCh--HHHHHHHHHHHHHhCCCCEEEEECCC------------------CHHHHHHHH-HHCCCEEEEEEEEE
Confidence 54322 12578899999999999999996321 122334444 34788877654443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-09 Score=99.38 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=72.7
Q ss_pred cCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCC----CCCCeeE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPF----EDNSFDV 201 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf----~~~~FD~ 201 (299)
...+|||+|||+|...+..... ..+|+|+|+|+.+++.+++ +++++.+|+ .++.. .+++||+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~---~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV---FKLLRTYRDRGEKFDV 296 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCH---HHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH---HHHHHHHHhcCCCCCE
Confidence 3468999999999844433333 3589999999999986543 357888887 44321 2568999
Q ss_pred EEecc---------cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 202 ITNVV---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 202 Vis~~---------~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|++.- ......+...++.++.++|||||.++++...
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99862 2333456788999999999999999987654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.3e-09 Score=97.40 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=69.7
Q ss_pred CCceeeccCcCCccccCCC--C-CCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEeccc---cc--
Q 022305 138 YSEVFPPSNTPGVSHFPPG--Y-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS---VD-- 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~--~-~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~---l~-- 209 (299)
..+|||+|||+|....... . +..+++|+|+++.+++.| ..++++++|+ ...+ .+++||+|+++-- ..
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~~~~~~~D~---~~~~-~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PWAEGILADF---LLWE-PGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TTEEEEESCG---GGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CCCcEEeCCh---hhcC-ccCCCCEEEECcCccCcccc
Confidence 4589999999997333222 1 457999999999999988 5688999998 4443 3468999999611 11
Q ss_pred -----ccCCH-------------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 210 -----YLTKP-------------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 210 -----~~~d~-------------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+.+. ..+++.+.++|||||.+++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 12111 25689999999999999888775
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-08 Score=93.17 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=59.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++.+|+ ..+++ .+||+|+++...
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~---~~~~~--~~~D~Vv~n~py 116 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDA---IKTVF--PKFDVCTANIPY 116 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----C---CSSCC--CCCSEEEEECCG
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECch---hhCCc--ccCCEEEEcCCc
Confidence 44689999999998555444446899999999999986653 367888998 66665 479999997654
Q ss_pred cccCCH-HHHH---------------HHHHhhccCCc
Q 022305 209 DYLTKP-IEVF---------------KEMCQVLKPGG 229 (299)
Q Consensus 209 ~~~~d~-~~~l---------------~ei~rvLkpGG 229 (299)
+..... ...+ +.+.|+++|+|
T Consensus 117 ~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 117 KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 433211 2333 44678888877
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-08 Score=95.69 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=66.9
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
....+|||+|||+|...+.......+|+|+|+|+.|++.|+++ ++++.+|+ .++.. .+||+|++.---
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~---~~~~~--~~fD~Vv~dPPr 363 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASD---REVSV--KGFDTVIVDPPR 363 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCT---TTCCC--TTCSEEEECCCT
T ss_pred CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh---HHcCc--cCCCEEEEcCCc
Confidence 3446899999999985544443467999999999999987653 67899998 55542 289999985331
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
. .-...+++.+. .|+|||.++++..
T Consensus 364 ~--g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 364 A--GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp T--CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred c--chHHHHHHHHH-hcCCCcEEEEECC
Confidence 1 11234666654 5999999999853
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-08 Score=93.60 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=70.6
Q ss_pred HHHHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCC-CCCCCCCCC
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNL-NPKLPFEDN 197 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~-~~~lpf~~~ 197 (299)
+.+++.+. ....+|||+|||+|...+.......+|+|+|+|+.|++.|++ +++|+.+|+.. ...+++.++
T Consensus 276 ~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~ 355 (433)
T 1uwv_A 276 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 355 (433)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred HHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcC
Confidence 33444442 234689999999998555544447899999999999987764 37899999831 011456778
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+||+|++.--- .. ...+++.+. .++|++.++++.
T Consensus 356 ~fD~Vv~dPPr--~g-~~~~~~~l~-~~~p~~ivyvsc 389 (433)
T 1uwv_A 356 GFDKVLLDPAR--AG-AAGVMQQII-KLEPIRIVYVSC 389 (433)
T ss_dssp CCSEEEECCCT--TC-CHHHHHHHH-HHCCSEEEEEES
T ss_pred CCCEEEECCCC--cc-HHHHHHHHH-hcCCCeEEEEEC
Confidence 99999985321 11 124555554 378999888874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=90.23 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=69.1
Q ss_pred hhhcCCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 134 LTKYYSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 134 l~~~~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
+.+....|||+|||+|...+.... ..++|+++|+|+.+++.++++ ++++.+|. ..++. .+.||.|+
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~---~~~~~-~~~~D~Vi 197 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPG-ENIADRIL 197 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCC-CSCEEEEE
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcH---HHhcc-ccCCCEEE
Confidence 344567899999999975554333 346999999999999876542 67788888 55553 57899999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++. .+....++..+.++|||||.+.+-
T Consensus 198 ~~~----p~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 198 MGY----VVRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp ECC----CSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred ECC----CCcHHHHHHHHHHHcCCCCEEEEE
Confidence 763 234456788889999999988663
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.8e-08 Score=89.68 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=69.3
Q ss_pred CceeeccCcCCccccC-----------------CCCCCCeEEEEeCCHHHH-------HhcCC-------------CCcE
Q 022305 139 SEVFPPSNTPGVSHFP-----------------PGYKQDRIVGMGMNEEEL-------KRNPV-------------LTEY 181 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~-----------------~~~~~~~v~gvD~S~~ml-------~~a~~-------------~~~~ 181 (299)
.+|+|+|||+|...+. ...+..+|...|+-.+.. ...++ ..-|
T Consensus 54 ~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f 133 (374)
T 3b5i_A 54 FTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYF 133 (374)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSE
T ss_pred eEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceE
Confidence 4699999999952111 122456888889887764 22211 1235
Q ss_pred EEeccCCCCCCCCCCCCeeEEEecccccccC--------------------------------------CHHHHHHHHHh
Q 022305 182 VVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--------------------------------------KPIEVFKEMCQ 223 (299)
Q Consensus 182 ~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~--------------------------------------d~~~~l~ei~r 223 (299)
+.+....-..-.|++++||+|+|+.+|||+. |...+|+..++
T Consensus 134 ~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~ 213 (374)
T 3b5i_A 134 VAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA 213 (374)
T ss_dssp EEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555421133458999999999999999997 33456888999
Q ss_pred hccCCcEEEEEecCc
Q 022305 224 VLKPGGLAIVSFSNR 238 (299)
Q Consensus 224 vLkpGG~lii~~~~~ 238 (299)
.|||||.+++++..+
T Consensus 214 eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 214 EVKRGGAMFLVCLGR 228 (374)
T ss_dssp HEEEEEEEEEEEEEC
T ss_pred HhCCCCEEEEEEecC
Confidence 999999999987653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.48 E-value=7.5e-08 Score=92.14 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCceeeccCcCCccccCCC---------------CCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCC
Q 022305 138 YSEVFPPSNTPGVSHFPPG---------------YKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKL 192 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~---------------~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~l 192 (299)
..+|||+|||+|....... ....+++|+|+++.+++.|+. ..++.++|. ...
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~---l~~ 248 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS---LEK 248 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT---TTS
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCC---CCC
Confidence 4589999999996222111 024689999999999987653 357888887 444
Q ss_pred CCCCCCeeEEEecccccccCC-----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 193 PFEDNSFDVITNVVSVDYLTK-----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 193 pf~~~~FD~Vis~~~l~~~~d-----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+.. ++||+|+++--+.+... ...+++.+.+.|||||.+++.+++
T Consensus 249 ~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 249 EPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 433 48999999854443211 147899999999999998887764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-08 Score=93.67 Aligned_cols=101 Identities=7% Similarity=-0.015 Sum_probs=66.8
Q ss_pred HHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCC-C-CCC--
Q 022305 129 PAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P-FED-- 196 (299)
Q Consensus 129 ~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~l-p-f~~-- 196 (299)
.+++.+.....+|||+|||+|...+.......+|+|+|+|+.|++.|++ +++++.+|+ +++ + +.+
T Consensus 205 ~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~---~~~~~~~~~~~ 281 (369)
T 3bt7_A 205 WALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA---EEFTQAMNGVR 281 (369)
T ss_dssp HHHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCS---HHHHHHHSSCC
T ss_pred HHHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCH---HHHHHHHhhcc
Confidence 3344333224689999999998555444455799999999999987654 367888887 433 1 121
Q ss_pred ------------CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 197 ------------NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 197 ------------~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
++||+|+..--- ..+..++.+.|+++|.+++...++
T Consensus 282 ~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 282 EFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp CCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESCH
T ss_pred ccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECCH
Confidence 379999864110 123467788888999776654443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-08 Score=92.82 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=55.2
Q ss_pred CeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec--ccccc--cCCHHHHHHHHHhhcc
Q 022305 160 DRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV--VSVDY--LTKPIEVFKEMCQVLK 226 (299)
Q Consensus 160 ~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~--~~l~~--~~d~~~~l~ei~rvLk 226 (299)
.+|+|+|+|+.|++.|++ .++++++|+ .+++.+ ++||+|+++ +.... -.+...+.+++.++||
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~---~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQV---ADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK 339 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCG---GGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---HhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence 569999999999997765 278999999 677664 489999998 32211 1244556777777777
Q ss_pred C--CcEEEEEecCcc
Q 022305 227 P--GGLAIVSFSNRC 239 (299)
Q Consensus 227 p--GG~lii~~~~~~ 239 (299)
+ ||.+++-+++..
T Consensus 340 ~~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 340 RMPTWSVYVLTSYEL 354 (393)
T ss_dssp TCTTCEEEEEECCTT
T ss_pred cCCCCEEEEEECCHH
Confidence 6 887777666654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.7e-07 Score=84.25 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=71.0
Q ss_pred CceeeccCcCCccccCC------------------CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC
Q 022305 139 SEVFPPSNTPGVSHFPP------------------GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK 191 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~------------------~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~ 191 (299)
-+|+|+||++|...+.. ..+..+|+..|+..++....-+ ..-|+.+....-..
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~ 132 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence 36999999999633321 2345688999998887763221 23466666521134
Q ss_pred CCCCCCCeeEEEecccccccCCHH---------------------------------HHHHHHHhhccCCcEEEEEecC
Q 022305 192 LPFEDNSFDVITNVVSVDYLTKPI---------------------------------EVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 192 lpf~~~~FD~Vis~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~lii~~~~ 237 (299)
-.|+++++|+|+|+.+|||+.+.+ .+|+..++.|+|||.+++++..
T Consensus 133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g 211 (359)
T 1m6e_X 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 578999999999999999996522 3488889999999999998754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.8e-08 Score=90.87 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=56.7
Q ss_pred CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec--ccccc--cCCHHHHHHHHHhhcc
Q 022305 160 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV--VSVDY--LTKPIEVFKEMCQVLK 226 (299)
Q Consensus 160 ~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~--~~l~~--~~d~~~~l~ei~rvLk 226 (299)
.+++|+|+|+.|++.|+++ ++++++|+ .+++.+ .+||+|+++ +.... -.+...+.+++.+.||
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~---~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk 332 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRL---QDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFA 332 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCG---GGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---HHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence 4699999999999977652 67899999 677665 489999998 33221 1245667777888887
Q ss_pred C--CcEEEEEecCcch
Q 022305 227 P--GGLAIVSFSNRCF 240 (299)
Q Consensus 227 p--GG~lii~~~~~~~ 240 (299)
+ ||.+.+-+++..+
T Consensus 333 ~~~g~~~~iit~~~~l 348 (384)
T 3ldg_A 333 PLKTWSQFILTNDTDF 348 (384)
T ss_dssp TCTTSEEEEEESCTTH
T ss_pred hCCCcEEEEEECCHHH
Confidence 7 8887777776543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-07 Score=86.36 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=68.1
Q ss_pred CceeeccCcCCcc----------ccCC---------CCCCCeEEEEeCC-----------HHHHHhcCC------CCcEE
Q 022305 139 SEVFPPSNTPGVS----------HFPP---------GYKQDRIVGMGMN-----------EEELKRNPV------LTEYV 182 (299)
Q Consensus 139 ~~vLDiGcG~G~~----------~~~~---------~~~~~~v~gvD~S-----------~~ml~~a~~------~~~~~ 182 (299)
.+|+|+||++|.. .+.. ..+..+|+..|+- +.+.+..++ ..-|+
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~ 133 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLI 133 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEE
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEE
Confidence 4699999999951 1111 1244678888988 554432211 23566
Q ss_pred EeccCCCCCCCCCCCCeeEEEecccccccCCHHH------------------------H---------------HHHHHh
Q 022305 183 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE------------------------V---------------FKEMCQ 223 (299)
Q Consensus 183 ~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~------------------------~---------------l~ei~r 223 (299)
.+....-..-.|++++||+|+|+.+|||+.+.+. + |+..++
T Consensus 134 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~ 213 (384)
T 2efj_A 134 GAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSE 213 (384)
T ss_dssp EECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766322334689999999999999999965431 2 555589
Q ss_pred hccCCcEEEEEecCc
Q 022305 224 VLKPGGLAIVSFSNR 238 (299)
Q Consensus 224 vLkpGG~lii~~~~~ 238 (299)
.|||||.+++++..+
T Consensus 214 eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 214 ELISRGRMLLTFICK 228 (384)
T ss_dssp HEEEEEEEEEEEECC
T ss_pred HhccCCeEEEEEecC
Confidence 999999999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.5e-09 Score=91.30 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=47.3
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCC-CCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED-NSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~-~~FD~Vis~ 205 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.+++ +++++.+|+ .++++++ ..| .|+++
T Consensus 31 ~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~---~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 31 HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI---LQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG---GGCCCCSSCCC-EEEEE
T ss_pred CCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChH---HhCCcccCCCe-EEEEe
Confidence 4689999999997443333334899999999999987654 478899999 7888764 456 45554
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.36 E-value=9e-08 Score=90.05 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEeccccc-cc---CCHHHHHHHHHhhcc
Q 022305 160 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-YL---TKPIEVFKEMCQVLK 226 (299)
Q Consensus 160 ~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~-~~---~d~~~~l~ei~rvLk 226 (299)
.+|+|+|+++.|++.|+++ +++.++|+ .+++.+ ++||+|+++--.. .+ .+...+.+++.++||
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~---~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDA---TQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR 333 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCG---GGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence 5799999999999987653 67899999 666654 5899999974321 12 345667788888888
Q ss_pred C--CcEEEEEecCcc
Q 022305 227 P--GGLAIVSFSNRC 239 (299)
Q Consensus 227 p--GG~lii~~~~~~ 239 (299)
+ ||.+.+-+++..
T Consensus 334 ~~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 334 KLKNWSYYLITSYED 348 (385)
T ss_dssp TSBSCEEEEEESCTT
T ss_pred hCCCCEEEEEECCHH
Confidence 7 887777666654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.9e-08 Score=88.12 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=54.9
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|.........+.+|+|+|+++.|++.+++ +++++++|+ .++++++.+||.|+++.-.
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~---l~~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDA---LKVDLNKLDFNKVVANLPY 124 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCT---TTSCGGGSCCSEEEEECCG
T ss_pred CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECch---hhCCcccCCccEEEEeCcc
Confidence 34689999999997443333336799999999999987654 478999999 8888888889999988544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8.8e-07 Score=78.97 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=63.8
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|.-.. ....+...++|+|++..+...... .+.....++ +...++++.||+|+|..+.
T Consensus 74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~---dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT---DIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC---CTTTSCCCCCSEEEECCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccc---eehhcCCCCccEEEecCcc
Confidence 34579999999996222 222334578889988654211111 234455555 4456778899999998755
Q ss_pred c----ccCCHH--HHHHHHHhhccCC-cEEEEEecC
Q 022305 209 D----YLTKPI--EVFKEMCQVLKPG-GLAIVSFSN 237 (299)
Q Consensus 209 ~----~~~d~~--~~l~ei~rvLkpG-G~lii~~~~ 237 (299)
+ ++++.. .+|+.+.++|||| |.|++.+-.
T Consensus 151 nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 151 SSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 5 222222 3468889999999 999997654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=79.10 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=63.6
Q ss_pred cCCceeeccCcCCcc--ccCCCC-CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCC---CCeeEE
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFED---NSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~-~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~---~~FD~V 202 (299)
...+|||+|||+|.. +++... ...+|+++|+++.+++.+++ +++++.+|+ ..++... ++||.|
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~fD~V 178 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF---LAVSPSDPRYHEVHYI 178 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGSCTTCGGGTTEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCh---HhcCccccccCCCCEE
Confidence 456899999999962 233222 34799999999999986553 367888898 5554322 579999
Q ss_pred Eec------ccccccC-----------CH-------HHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNV------VSVDYLT-----------KP-------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~------~~l~~~~-----------d~-------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++. .++..-+ +. .++|+.+.+.|| ||.++.++..
T Consensus 179 l~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 179 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 952 1222111 21 246778888887 9988877543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.3e-07 Score=80.08 Aligned_cols=65 Identities=6% Similarity=-0.039 Sum_probs=50.2
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCC----CCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED----NSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~----~~FD~Vis~ 205 (299)
...+|||+|||+|.........+.+|+|+|+++.|++.+++ +++++++|+ .++++++ +.|| |+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDA---LQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCT---TTCCGGGSCCSSCEE-EEEE
T ss_pred CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcch---HhCCHHHhccCCCeE-EEec
Confidence 45689999999997555444456899999999999987654 478999999 7777643 5688 6665
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.7e-07 Score=83.88 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=65.2
Q ss_pred CCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCCC-----------------------CcEEEeccCCCCCC
Q 022305 138 YSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-----------------------TEYVVQDLNLNPKL 192 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~~-----------------------~~~~~~D~~~~~~l 192 (299)
..+|||+|||+|...+. ...+..+|+++|+++.+++.++++ ++++.+|+ ..+
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da---~~~ 124 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA---NRL 124 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH---HHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcH---HHH
Confidence 46899999999974332 222456899999999998755431 55677777 333
Q ss_pred C-CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 193 P-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 193 p-f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
. ...++||+|+..- ...+..++..+.+.|||||.++++..
T Consensus 125 ~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 125 MAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEee
Confidence 2 1245799999542 12457889999999999998888753
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.1e-07 Score=80.34 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=51.8
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCH-------HHHHhcCC---------CCcEEEeccCCCCCC-C-CCC--C
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNE-------EELKRNPV---------LTEYVVQDLNLNPKL-P-FED--N 197 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~-------~ml~~a~~---------~~~~~~~D~~~~~~l-p-f~~--~ 197 (299)
..+|||+|||+|...+.....+.+|+|+|+|+ .+++.+++ +++++.+|. ..+ + +++ +
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~---~~~l~~~~~~~~ 160 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA---AEQMPALVKTQG 160 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH---HHHHHHHHHHHC
T ss_pred cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH---HHHHHhhhccCC
Confidence 46899999999985544433478999999999 99887754 278899998 443 3 444 7
Q ss_pred CeeEEEecccccc
Q 022305 198 SFDVITNVVSVDY 210 (299)
Q Consensus 198 ~FD~Vis~~~l~~ 210 (299)
+||+|++.-.+++
T Consensus 161 ~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 161 KPDIVYLDPMYPE 173 (258)
T ss_dssp CCSEEEECCCC--
T ss_pred CccEEEECCCCCC
Confidence 8999999755544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.2e-07 Score=90.10 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=52.8
Q ss_pred CeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCC--CCCCCCeeEEEec--cccccc--CCHHH---HHHHH
Q 022305 160 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL--PFEDNSFDVITNV--VSVDYL--TKPIE---VFKEM 221 (299)
Q Consensus 160 ~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~l--pf~~~~FD~Vis~--~~l~~~--~d~~~---~l~ei 221 (299)
.+++|+|+++.|++.|+.+ +++.++|+ .++ |..+++||+|+++ +....- .+... .|.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~---~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDV---AQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCG---GGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 5899999999999987653 68899998 555 4445589999998 332211 12333 44555
Q ss_pred HhhccCCcEEEEEecCcc
Q 022305 222 CQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 222 ~rvLkpGG~lii~~~~~~ 239 (299)
.+.+.|||.+++-+++..
T Consensus 334 lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 334 MKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHCTTCEEEEEESCHH
T ss_pred HHhhCCCCeEEEEeCCHH
Confidence 566668998887777643
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.7e-07 Score=79.10 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=50.3
Q ss_pred ceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----CCcEEEeccCCCCCCCCCCC-CeeEEEecc
Q 022305 140 EVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDN-SFDVITNVV 206 (299)
Q Consensus 140 ~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----~~~~~~~D~~~~~~lpf~~~-~FD~Vis~~ 206 (299)
+|||+|||+|.........+.+|+|+|+++.|++.+++ +++++++|+ .++++++. .||.|+++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~---l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDA---LLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCG---GGSCGGGSCTTEEEEEEE
T ss_pred eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECCh---hhCChhhccCccEEEecC
Confidence 99999999997444333345899999999999987654 478999999 77777643 689988885
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-06 Score=84.37 Aligned_cols=97 Identities=9% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCceeeccCcCCccccC------CCC--------------CCCeEEEEeCCHHHHHhcCCC-------------CcEEEe
Q 022305 138 YSEVFPPSNTPGVSHFP------PGY--------------KQDRIVGMGMNEEELKRNPVL-------------TEYVVQ 184 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~------~~~--------------~~~~v~gvD~S~~ml~~a~~~-------------~~~~~~ 184 (299)
..+|+|++||+|...+. ... ...+++|+|+++.+++.|+.+ ..+.++
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 45899999999962211 111 124799999999999876531 467788
Q ss_pred ccCCCCCCC-CCCCCeeEEEecccccccC-------------C-HHHHHHHHHhhccCCcEEEEEecC
Q 022305 185 DLNLNPKLP-FEDNSFDVITNVVSVDYLT-------------K-PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 185 D~~~~~~lp-f~~~~FD~Vis~~~l~~~~-------------d-~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|. ...+ ...+.||+|+++--+.... + ...++..+.+.|||||.+.+.+++
T Consensus 250 Dt---L~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 250 NT---LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp CT---TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CC---cccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 76 3332 4457899999973222211 1 236899999999999998887764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=78.32 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=68.7
Q ss_pred cCCceeeccCcCCccccCC-----CCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCC--C-CCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPP-----GYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKL--P-FEDNS 198 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-----~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~l--p-f~~~~ 198 (299)
...+|+|++||+|...+.. ......++|+|+++.+...|+. ...+..+|. ... | +....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDt---L~~d~p~~~~~~ 297 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADT---LDEDWPTQEPTN 297 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCT---TTSCSCCSSCCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecce---eccccccccccc
Confidence 3458999999999733321 1235789999999999987753 235777886 333 3 45688
Q ss_pred eeEEEec--ccccc-----------------cC---C-HHHHHHHHHhhcc-CCcEEEEEecCc
Q 022305 199 FDVITNV--VSVDY-----------------LT---K-PIEVFKEMCQVLK-PGGLAIVSFSNR 238 (299)
Q Consensus 199 FD~Vis~--~~l~~-----------------~~---d-~~~~l~ei~rvLk-pGG~lii~~~~~ 238 (299)
||+|+++ +...+ ++ + -..++..+.+.|| |||.+.+.+|+.
T Consensus 298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 9999987 22111 10 0 1248899999999 999988877763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-05 Score=72.76 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=71.8
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCee
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
....+||=+|.|.|. ..+....+..+|+.+||++.+++.+++ +++.+.+|.. .-+.-.+++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~--~~l~~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV--NFVNQTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT--TTTSCSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH--HHHhhccccCC
Confidence 456799999999885 333434455799999999999986543 3778889983 33445678899
Q ss_pred EEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|+.-..=..-+ --..+++.++++|+|||.++....+
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 999653211111 1257899999999999999886543
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.5e-06 Score=81.81 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=66.6
Q ss_pred CCceeeccCcCCccccCCCC--CC-CeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCC-C-CCCCCeeEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGY--KQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL-P-FEDNSFDVI 202 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~--~~-~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~l-p-f~~~~FD~V 202 (299)
..+|||++||+|...+.... .+ .+|+++|+++.+++.++++ ++++.+|+ ..+ . ...+.||+|
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da---~~~l~~~~~~~fD~V 129 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEA---NFFLRKEWGFGFDYV 129 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH---HHHHHSCCSSCEEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCH---HHHHHHhhCCCCcEE
Confidence 46899999999974443222 34 6899999999999866542 56677776 222 1 124579999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++.- ...+..++..+.+.|||||+++++...
T Consensus 130 ~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~t~ 160 (392)
T 3axs_A 130 DLDP----FGTPVPFIESVALSMKRGGILSLTATD 160 (392)
T ss_dssp EECC----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECC----CcCHHHHHHHHHHHhCCCCEEEEEecc
Confidence 9764 233467899999999999988887643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=78.01 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=64.9
Q ss_pred CceeeccCcCCccccCCC-----------------CCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCC
Q 022305 139 SEVFPPSNTPGVSHFPPG-----------------YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL 192 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~-----------------~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~l 192 (299)
.+|+|++||+|...+... .....++|+|+++.+++.|+.+ +.+.++|.- ...
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL--~~~ 323 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSF--LDD 323 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTT--TSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchh--cCc
Confidence 489999999996322210 0135899999999999877642 222556641 222
Q ss_pred CCCCCCeeEEEec--cccc-c----------------------cC----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 193 PFEDNSFDVITNV--VSVD-Y----------------------LT----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 193 pf~~~~FD~Vis~--~~l~-~----------------------~~----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.+.+..||+|+++ +... + ++ .-..+++.+.+.|||||.+.+.+|+.
T Consensus 324 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 324 QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 3556889999986 2221 1 11 11258899999999999988887763
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=69.74 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=44.0
Q ss_pred cCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCC----CcEEEeccCCCCCCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVL----TEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~----~~~~~~D~~~~~~lpf~~ 196 (299)
...+|||+|||+|......... ..+|+|+|+++.|++.++++ ++++++|+ .++++++
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~ 92 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDA---SKFPFCS 92 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCT---TTCCGGG
T ss_pred CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcch---hhCChhH
Confidence 3468999999999743333333 48999999999999987653 67889999 7887765
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-06 Score=80.98 Aligned_cols=102 Identities=13% Similarity=0.018 Sum_probs=64.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCC-CC-CCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKL-PF-EDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~l-pf-~~~~FD~Vis~ 205 (299)
..+|||+|||+|...+.....+.+|+|+|+|+.|++.+++ +++++++|+ .+. +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da---~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDF---KEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCG---GGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcH---HHhhhhccCCCceEEEEC
Confidence 4689999999998544444456899999999999986643 367888998 442 32 34689999974
Q ss_pred --------ccccccCCHHHHHHHHHhhccC-CcEEEEEecCcchHH
Q 022305 206 --------VSVDYLTKPIEVFKEMCQVLKP-GGLAIVSFSNRCFWT 242 (299)
Q Consensus 206 --------~~l~~~~d~~~~l~ei~rvLkp-GG~lii~~~~~~~~~ 242 (299)
.-+..+.+..--+.++.+.|+. +..+++..+....+.
T Consensus 171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP~ld~~ 216 (410)
T 3ll7_A 171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMIDLW 216 (410)
T ss_dssp CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECTTSCHH
T ss_pred CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCCCCChH
Confidence 1222232222233444444433 346666665544444
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=71.00 Aligned_cols=96 Identities=9% Similarity=-0.050 Sum_probs=61.7
Q ss_pred CCceeeccCcCCc-cc-cCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGV-SH-FPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~-~~-~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|. .. .....+...|+|+|++..+...+.. .+.....+. +-..++.+.+|+|+|-.+..
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~---dv~~l~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT---DVFNMEVIPGDTLLCDIGES 167 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC---CGGGSCCCCCSEEEECCCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCc---chhhcCCCCcCEEEecCccC
Confidence 3579999999986 22 2223344679999999775443332 122333333 22345678999999987665
Q ss_pred ccCC-----HH--HHHHHHHhhccCC--cEEEEEecC
Q 022305 210 YLTK-----PI--EVFKEMCQVLKPG--GLAIVSFSN 237 (299)
Q Consensus 210 ~~~d-----~~--~~l~ei~rvLkpG--G~lii~~~~ 237 (299)
... .. .+|.-+.++|||| |.|++-+-.
T Consensus 168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 321 11 3466678999999 999997654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=65.57 Aligned_cols=93 Identities=5% Similarity=-0.097 Sum_probs=63.5
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCC------------CCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLN------------PKL 192 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~------------~~l 192 (299)
....+||++|||-.+..++.. ++++|+.+|.+++..+.+++ +++++.+|+... +.+
T Consensus 29 ~~a~~VLEiGtGySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 29 EEAEVILEYGSGGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HHCSEEEEESCSHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred hCCCEEEEECchHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 345799999997333333332 37999999999999876543 367888886210 002
Q ss_pred C--------C-CCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 193 P--------F-EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 193 p--------f-~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+ . ..++||+|+.-.- .....+..+.+.|+|||.++++
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEET
T ss_pred HHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEe
Confidence 2 1 2378999997752 2346777788999999999775
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.6e-06 Score=75.65 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=43.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCe----EEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDR----IVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~----v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~ 196 (299)
...+|||+|||+|...........+ |+|+|+++.|++.+++ +++++++|+ .++++++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~---~~~~~~~ 106 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA---LTFDFGS 106 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG---GGCCGGG
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh---hcCChhH
Confidence 4568999999999744433322344 9999999999998764 478999999 7777653
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-06 Score=76.34 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=54.2
Q ss_pred HHHHHHhh-hcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCC--CC
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP--FE 195 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lp--f~ 195 (299)
+.+++.+. +...+|||+|||+|.. .+....++.+|+|+|+|+.|++.|++ +++++++|+ ..++ +.
T Consensus 16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~---~~l~~~l~ 92 (301)
T 1m6y_A 16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLK 92 (301)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCH---HHHHHHHH
Confidence 44556553 3456899999999962 23333346899999999999987654 477899998 6664 22
Q ss_pred ---CCCeeEEEecc
Q 022305 196 ---DNSFDVITNVV 206 (299)
Q Consensus 196 ---~~~FD~Vis~~ 206 (299)
.++||.|++..
T Consensus 93 ~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 93 TLGIEKVDGILMDL 106 (301)
T ss_dssp HTTCSCEEEEEEEC
T ss_pred hcCCCCCCEEEEcC
Confidence 25799999753
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.71 E-value=5.5e-06 Score=73.37 Aligned_cols=65 Identities=8% Similarity=-0.045 Sum_probs=47.7
Q ss_pred cCCceeeccCcCCccccCCCCCCCe--EEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCC-----CCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDR--IVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED-----NSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~--v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~-----~~FD~Vi 203 (299)
...+|||+|||+|.... .. ...+ |+|+|+++.|++.+++ +++++++|+ ..+++++ +..|.|+
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~~~~~~vv 95 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA---MTFNFGELAEKMGQPLRVF 95 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG---GGCCHHHHHHHHTSCEEEE
T ss_pred CcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECch---hhCCHHHhhcccCCceEEE
Confidence 34689999999997544 32 2456 9999999999997765 367889998 6776543 2346777
Q ss_pred ecc
Q 022305 204 NVV 206 (299)
Q Consensus 204 s~~ 206 (299)
++.
T Consensus 96 sNl 98 (252)
T 1qyr_A 96 GNL 98 (252)
T ss_dssp EEC
T ss_pred ECC
Confidence 764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.8e-06 Score=74.03 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=56.6
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHH-------HHhcC----------CCCcEEEeccCCCCC-CCCCCCCee
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEE-------LKRNP----------VLTEYVVQDLNLNPK-LPFEDNSFD 200 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~m-------l~~a~----------~~~~~~~~D~~~~~~-lpf~~~~FD 200 (299)
.+|||++||.|...+.....+++|+++|+++.+ ++.++ .+++++++|. .+ ++...++||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~---~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS---LTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH---HHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH---HHHHHhCcccCC
Confidence 689999999998555433346789999999975 43332 2477899987 33 332223699
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCc
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGG 229 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG 229 (299)
+|++.-.+.+- .....+++..++|++.+
T Consensus 167 vV~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred EEEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 99998666553 23355666777777655
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=72.97 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCceeeccCcCCccccCC--CC---CCCeEEEEeCCHHHHHhc--CC---------C---CcEEEeccCCCCCC-CCCCC
Q 022305 138 YSEVFPPSNTPGVSHFPP--GY---KQDRIVGMGMNEEELKRN--PV---------L---TEYVVQDLNLNPKL-PFEDN 197 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~--~~---~~~~v~gvD~S~~ml~~a--~~---------~---~~~~~~D~~~~~~l-pf~~~ 197 (299)
..+|||+|||+|...+.. .. ...+++|+|+++.+++.| +. . ..+...|. ... +...+
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~---L~~~~~~~~ 398 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDV---CSLNPEDFA 398 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCG---GGCCGGGGT
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecch---hcccccccC
Confidence 458999999999733221 11 236899999999998877 21 1 12333343 221 23457
Q ss_pred CeeEEEecccc--cccC--------------------------C-HHHHHHHHHhhccCCcEEEEEecCc
Q 022305 198 SFDVITNVVSV--DYLT--------------------------K-PIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 198 ~FD~Vis~~~l--~~~~--------------------------d-~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
.||+|+++==. ..-. + ...+++.+.+.|||||.+.+.+|+.
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 89999987211 1000 1 2346788999999999999888863
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.9e-05 Score=77.16 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=59.6
Q ss_pred ceeeccCcCCcc---cc-CCCC--CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 140 EVFPPSNTPGVS---HF-PPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 140 ~vLDiGcG~G~~---~~-~~~~--~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
.|||+|||+|.. .+ +.+. ...+|++||-|+.+. .+.+ +++++.+|+ +++..+ +++|+|||
T Consensus 360 vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~---eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 360 VLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDM---REWVAP-EKADIIVS 434 (637)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCT---TTCCCS-SCEEEEEC
T ss_pred EEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcc---eeccCC-cccCEEEE
Confidence 599999999952 11 1111 123789999998543 3322 389999999 777665 56999997
Q ss_pred ccccccc--CCHHHHHHHHHhhccCCcEE
Q 022305 205 VVSVDYL--TKPIEVFKEMCQVLKPGGLA 231 (299)
Q Consensus 205 ~~~l~~~--~d~~~~l~ei~rvLkpGG~l 231 (299)
=..=..+ +....++....|.|||||.+
T Consensus 435 EwMG~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 435 ELLGSFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp CCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred EcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence 5322111 23457888889999999976
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4e-05 Score=71.25 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=65.1
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------------CCcEEEeccCCCCCCC-CCCCC
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------------LTEYVVQDLNLNPKLP-FEDNS 198 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------------~~~~~~~D~~~~~~lp-f~~~~ 198 (299)
+...+|||+++|+|. .+++.......|+++|+|+.=++..++ ++.....|. ..++ ...+.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~---~~~~~~~~~~ 223 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG---RKWGELEGDT 223 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG---GGHHHHSTTC
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch---hhcchhcccc
Confidence 445689999999995 444444455689999999876653321 245566676 4443 45678
Q ss_pred eeEEE----eccc----ccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 199 FDVIT----NVVS----VDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 199 FD~Vi----s~~~----l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
||.|+ |+.. +..-++ -.++|....+.|||||.++-++-.
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 99999 4431 111111 136788899999999988877544
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00041 Score=62.33 Aligned_cols=98 Identities=8% Similarity=-0.005 Sum_probs=59.9
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
+...++||+||++|. ..+....+...|+|+|+...+...... .+.....+. +-..+..+.+|+|+|-.+
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~---di~~l~~~~~DlVlsD~A 156 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS---NVFTMPTEPSDTLLCDIG 156 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC---CTTTSCCCCCSEEEECCC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCc---eeeecCCCCcCEEeecCc
Confidence 344689999999885 222222234578999998654322211 122222222 223455678999999765
Q ss_pred ccccCCH-------HHHHHHHHhhccCC-cEEEEEecC
Q 022305 208 VDYLTKP-------IEVFKEMCQVLKPG-GLAIVSFSN 237 (299)
Q Consensus 208 l~~~~d~-------~~~l~ei~rvLkpG-G~lii~~~~ 237 (299)
.. .... ...|.-+.++|||| |.|++-+-.
T Consensus 157 Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 157 ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 55 3221 23466678999999 999997544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.32 E-value=5.8e-05 Score=66.96 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=59.4
Q ss_pred CceeeccCcCCccccCC--C-------CC-----CCeEEEEeCCH---HHHHhc-----------C--------------
Q 022305 139 SEVFPPSNTPGVSHFPP--G-------YK-----QDRIVGMGMNE---EELKRN-----------P-------------- 176 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~--~-------~~-----~~~v~gvD~S~---~ml~~a-----------~-------------- 176 (299)
.+|||+|+|+|...+.. . .+ ..+++++|..| ++++++ +
T Consensus 62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~ 141 (257)
T 2qy6_A 62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 141 (257)
T ss_dssp EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence 47999999999743321 0 23 25899999776 544422 1
Q ss_pred --------CCCcEEEeccCCCCCCCCCC----CCeeEEEec-ccccccCC--HHHHHHHHHhhccCCcEEEE
Q 022305 177 --------VLTEYVVQDLNLNPKLPFED----NSFDVITNV-VSVDYLTK--PIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 177 --------~~~~~~~~D~~~~~~lpf~~----~~FD~Vis~-~~l~~~~d--~~~~l~ei~rvLkpGG~lii 233 (299)
.+++++.+|+. +.++..+ ..||+|+.- ++-...++ -..+|+++.++|||||.++.
T Consensus 142 r~~~~~~~~~l~l~~GDa~--~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 142 RLLLDEGRVTLDLWFGDIN--ELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEC--CEEEEEEESCHH--HHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred heeccCCceEEEEEECcHH--HHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 12456777872 2244322 279999974 33222233 26799999999999998774
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.30 E-value=2.2e-05 Score=78.39 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=62.3
Q ss_pred ceeeccCcCCccc---c-CCC-----------CCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCC-
Q 022305 140 EVFPPSNTPGVSH---F-PPG-----------YKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFE- 195 (299)
Q Consensus 140 ~vLDiGcG~G~~~---~-~~~-----------~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~- 195 (299)
.|||+|||+|... + +.. ....+|++||-|+.++...+ .+++++.+|+ +++..+
T Consensus 412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~---eev~lp~ 488 (745)
T 3ua3_A 412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDM---RSLPGIA 488 (745)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCG---GGHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCch---hhccccc
Confidence 5999999999631 1 111 12249999999986553211 2499999999 777663
Q ss_pred ----CCCeeEEEeccccccc--CCHHHHHHHHHhhccCCcEEE
Q 022305 196 ----DNSFDVITNVVSVDYL--TKPIEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 196 ----~~~FD~Vis~~~l~~~--~d~~~~l~ei~rvLkpGG~li 232 (299)
.++.|+|||-..-... +-..+.|..+.|.|||||.+|
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5789999987643222 123568888899999999753
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0021 Score=59.63 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=59.9
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH--hcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK--RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~--~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
+...++||+||++|.-.......+.+|+|||+.+ |-. ....+++++.+|. ..+..+.+.||+|+|-.+ .+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~l~~~~~V~~~~~d~---~~~~~~~~~~D~vvsDm~----~~ 281 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSLMDTGQVTWLREDG---FKFRPTRSNISWMVCDMV----EK 281 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHHHHTTTCEEEECSCT---TTCCCCSSCEEEEEECCS----SC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChhhccCCCeEEEeCcc---ccccCCCCCcCEEEEcCC----CC
Confidence 3457899999998862222223478999999874 211 2234588999998 666666788999999654 46
Q ss_pred HHHHHHHHHhhccCC
Q 022305 214 PIEVFKEMCQVLKPG 228 (299)
Q Consensus 214 ~~~~l~ei~rvLkpG 228 (299)
+..+++-+.+.|..|
T Consensus 282 p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 282 PAKVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHhHHHHHHHHhcc
Confidence 777777777777766
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.14 E-value=5.3e-05 Score=61.28 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=54.4
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCC--CCeeEEEecccccccCCH
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFED--NSFDVITNVVSVDYLTKP 214 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~--~~FD~Vis~~~l~~~~d~ 214 (299)
.++||+|||.|. ........+.+|+++|+|+..++ +++.|+ .+ |..+ ..||+|.+..- -+++
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------~v~dDi---F~-P~~~~Y~~~DLIYsirP---P~El 102 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------IVRDDI---TS-PRMEIYRGAALIYSIRP---PAEI 102 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------EECCCS---SS-CCHHHHTTEEEEEEESC---CTTT
T ss_pred CcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------eEEccC---CC-CcccccCCcCEEEEcCC---CHHH
Confidence 599999999994 22332225789999999998766 788888 33 3222 47999987652 2356
Q ss_pred HHHHHHHHhhccCCcEEEEE
Q 022305 215 IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 215 ~~~l~ei~rvLkpGG~lii~ 234 (299)
...+.++.+.+ |.-++|.
T Consensus 103 ~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 103 HSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp HHHHHHHHHHH--TCEEEEE
T ss_pred HHHHHHHHHHc--CCCEEEE
Confidence 66666666544 3566664
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00059 Score=77.58 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=46.1
Q ss_pred CceeeccCcCCccccC-----CCCC--CCeEEEEeCCHHHHHhcCCCCc---EEE--eccCCCCC-CCCCCCCeeEEEec
Q 022305 139 SEVFPPSNTPGVSHFP-----PGYK--QDRIVGMGMNEEELKRNPVLTE---YVV--QDLNLNPK-LPFEDNSFDVITNV 205 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~-----~~~~--~~~v~gvD~S~~ml~~a~~~~~---~~~--~D~~~~~~-lpf~~~~FD~Vis~ 205 (299)
.+||++|.|+|..... ...+ ..+++..|+|+...+.++++.. ... .|. .. .++..++||+|++.
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~---~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDP---ANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCS---SCCCC-----CCEEEEE
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccc---cccccCCCCceeEEEEc
Confidence 5899999998852211 0111 2478999999998888887521 212 133 22 24566789999999
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+++|-.++....|+++.++|||||++++..
T Consensus 1319 ~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1319 CALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CC--------------------CCEEEEEE
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 999888899999999999999999887754
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0013 Score=61.21 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=63.4
Q ss_pred CCceeeccCcCCc-cccCCCCCCCeEEEEeCCHHHHHhcCCC----------------CcEEEeccCCCCCC----CCCC
Q 022305 138 YSEVFPPSNTPGV-SHFPPGYKQDRIVGMGMNEEELKRNPVL----------------TEYVVQDLNLNPKL----PFED 196 (299)
Q Consensus 138 ~~~vLDiGcG~G~-~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------------~~~~~~D~~~~~~l----pf~~ 196 (299)
..+||=+|.|.|. .....+++..+|+.|||++.+++.+++. ++.+.+|. ... .-..
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da---~~fl~~~~~~~ 282 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDC---IPVLKRYAKEG 282 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCH---HHHHHHHHHHT
T ss_pred CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHH---HHHHHhhhhcc
Confidence 4689999999775 2222334557999999999999977642 34556665 211 1134
Q ss_pred CCeeEEEeccccccc-CC---------HHHHHHHHHhhccCCcEEEEEe
Q 022305 197 NSFDVITNVVSVDYL-TK---------PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~-~d---------~~~~l~ei~rvLkpGG~lii~~ 235 (299)
+.||+|+.-..-... .+ -.++++.++++|+|||.++...
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 679999965321111 11 1467889999999999988753
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0047 Score=55.43 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=64.1
Q ss_pred cCCceeeccCcCCc-cc-cCCCCCCCeEEEEeCCHHHHH-------hcCCCCcEEEe-ccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGV-SH-FPPGYKQDRIVGMGMNEEELK-------RNPVLTEYVVQ-DLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~-~~~~~~~~~v~gvD~S~~ml~-------~a~~~~~~~~~-D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....|||+||++|. .. .........|+|+|+-..--+ ..-..+.++.+ |+ ..++- ..+|+|+|-.
T Consensus 94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv---~~l~~--~~~D~ivcDi 168 (321)
T 3lkz_A 94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDV---FYRPS--ECCDTLLCDI 168 (321)
T ss_dssp CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCT---TSSCC--CCCSEEEECC
T ss_pred CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCH---hhCCC--CCCCEEEEEC
Confidence 34589999999886 22 333333357999999876111 11123677776 76 55543 6699999976
Q ss_pred cccccCCHH-------HHHHHHHhhccCC-cEEEEEecCc
Q 022305 207 SVDYLTKPI-------EVFKEMCQVLKPG-GLAIVSFSNR 238 (299)
Q Consensus 207 ~l~~~~d~~-------~~l~ei~rvLkpG-G~lii~~~~~ 238 (299)
. +--+++. ++|+-+.+.|++| |-|++-+-.+
T Consensus 169 g-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 169 G-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred c-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 6 5555442 3666668889999 8888887665
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=58.81 Aligned_cols=95 Identities=8% Similarity=0.023 Sum_probs=64.9
Q ss_pred cCCceeeccCcCCccccCC--C-----CCCCeEEEEeCCHHH--------------------------HH-------hc-
Q 022305 137 YYSEVFPPSNTPGVSHFPP--G-----YKQDRIVGMGMNEEE--------------------------LK-------RN- 175 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~--~-----~~~~~v~gvD~S~~m--------------------------l~-------~a- 175 (299)
....||++|+..|.+.+.. . .++.+|+++|..+.+ ++ .+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4678999999988744321 1 136789999964321 11 11
Q ss_pred --CCCCcEEEeccCCCCCCC-CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 176 --PVLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 176 --~~~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.++++++.+|+. +.+| +++++||+|+.-.- +.......|+.+.+.|+|||+++++.
T Consensus 186 l~~~~I~li~Gda~--etL~~~~~~~~d~vfIDaD--~y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFK--DTLPTAPIDTLAVLRMDGD--LYESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHH--HHSTTCCCCCEEEEEECCC--SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHH--HHHhhCCCCCEEEEEEcCC--ccccHHHHHHHHHhhcCCCEEEEEcC
Confidence 245889999884 4455 44678999997642 22234578999999999999999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00046 Score=62.17 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
..++.........|||++||+|+..+.....+.+++|+|+++.+++.++++
T Consensus 226 ~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 226 ERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp HHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 334444445567899999999986666655678999999999999987754
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0037 Score=56.13 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=56.8
Q ss_pred CCceeeccCc------CCccccCCCCCC-CeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccc--
Q 022305 138 YSEVFPPSNT------PGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV-- 208 (299)
Q Consensus 138 ~~~vLDiGcG------~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l-- 208 (299)
..+|||+|+| +|...+....+. +.|+++|+.+-.. ....++++|. ..+.. ...||+|+|-..-
T Consensus 110 gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----da~~~IqGD~---~~~~~-~~k~DLVISDMAPNt 181 (344)
T 3r24_A 110 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----DADSTLIGDC---ATVHT-ANKWDLIISDMYDPR 181 (344)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC----SSSEEEESCG---GGEEE-SSCEEEEEECCCCTT
T ss_pred CCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc----CCCeEEEccc---ccccc-CCCCCEEEecCCCCc
Confidence 4689999974 554222222343 6999999988431 1124588997 44332 4789999975321
Q ss_pred -ccc-------CCH-HHHHHHHHhhccCCcEEEEEe
Q 022305 209 -DYL-------TKP-IEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 209 -~~~-------~d~-~~~l~ei~rvLkpGG~lii~~ 235 (299)
-+. ..+ +.++.=+.++|+|||.|++-+
T Consensus 182 TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 182 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 111 123 345566778999999999864
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0087 Score=58.28 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=61.6
Q ss_pred cCCceeeccCcCCcccc------CCCC---------CCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHF------PPGY---------KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP 193 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~------~~~~---------~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp 193 (299)
...+|+|+.||+|.... .... ....++|+|+++.+...|+- ...+..+|. -..|
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dt---L~~~ 293 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENS---LRFP 293 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCT---TCSC
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccccccc---ccCc
Confidence 34589999999996222 1111 12579999999999887653 234555664 3333
Q ss_pred C----CCCCeeEEEec--cccccc-------------CCH-HHHHHHHHhhcc-------CCcEEEEEecC
Q 022305 194 F----EDNSFDVITNV--VSVDYL-------------TKP-IEVFKEMCQVLK-------PGGLAIVSFSN 237 (299)
Q Consensus 194 f----~~~~FD~Vis~--~~l~~~-------------~d~-~~~l~ei~rvLk-------pGG~lii~~~~ 237 (299)
. +...||+|+++ +...+- .+. ..++..+.+.|| |||.+.+.+|+
T Consensus 294 ~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 294 LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred hhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence 2 24579999987 221111 011 245677888887 79998888775
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0095 Score=52.43 Aligned_cols=97 Identities=10% Similarity=-0.024 Sum_probs=55.0
Q ss_pred hhcCCceeeccCcCCc-cccCCCCC-CCeEEEEeCCHH--HHHhcC--CCC---cEEEe-ccCCCCCCCCCCCCeeEEEe
Q 022305 135 TKYYSEVFPPSNTPGV-SHFPPGYK-QDRIVGMGMNEE--ELKRNP--VLT---EYVVQ-DLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~-~~~~~~~~-~~~v~gvD~S~~--ml~~a~--~~~---~~~~~-D~~~~~~lpf~~~~FD~Vis 204 (299)
.+...+|||+||++|. +.++.... -..|.|.++... +..... ..+ .++.+ |+ .. .+...+|+|+|
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df---~~--~~~~~~DvVLS 145 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDV---FY--KPSEISDTLLC 145 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCG---GG--SCCCCCSEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCc---cC--CCCCCCCEEEe
Confidence 4445689999999986 33332221 123344444433 222221 123 33335 88 44 33567999998
Q ss_pred cccccccC----CHH---HHHHHHHhhccCCc-EEEEEecC
Q 022305 205 VVSVDYLT----KPI---EVFKEMCQVLKPGG-LAIVSFSN 237 (299)
Q Consensus 205 ~~~l~~~~----d~~---~~l~ei~rvLkpGG-~lii~~~~ 237 (299)
-.+-. .. |.. .+|.-+.++||||| .|++-+-.
T Consensus 146 DMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 146 DIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 65432 22 222 25666679999999 89887544
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.004 Score=55.70 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=52.7
Q ss_pred cHHHHHHhh-hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCC-----C
Q 022305 127 DDPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP-----F 194 (299)
Q Consensus 127 ~~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lp-----f 194 (299)
.+.+++.+. +.-..+||.+||.|. ..++.. +++|+|+|.++.+++.+++ ++++++++. .+++ .
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f---~~l~~~L~~~ 85 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAAL 85 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCc---chHHHHHHHc
Confidence 355666663 345689999999886 222322 6899999999999987753 577888888 5553 2
Q ss_pred CCCCeeEEEec
Q 022305 195 EDNSFDVITNV 205 (299)
Q Consensus 195 ~~~~FD~Vis~ 205 (299)
..++||.|++.
T Consensus 86 g~~~vDgIL~D 96 (285)
T 1wg8_A 86 GVERVDGILAD 96 (285)
T ss_dssp TCSCEEEEEEE
T ss_pred CCCCcCEEEeC
Confidence 23579999963
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.035 Score=48.31 Aligned_cols=96 Identities=17% Similarity=0.073 Sum_probs=62.3
Q ss_pred cCCceeeccCcCCc-cc-cCCCCCCCeEEEEeCCHHHHHh-------cCCCCcEEEe-ccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGV-SH-FPPGYKQDRIVGMGMNEEELKR-------NPVLTEYVVQ-DLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~-~~-~~~~~~~~~v~gvD~S~~ml~~-------a~~~~~~~~~-D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....|||+||++|. .. ........+|+|+|+-..--+. .-..++|+.+ |+ ..++ ...+|+|+|-.
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv---~~~~--~~~~DtllcDI 152 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDV---FYLP--PEKCDTLLCDI 152 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCG---GGCC--CCCCSEEEECC
T ss_pred CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccce---eecC--CccccEEEEec
Confidence 44589999999886 22 2333334589999998643321 1123788888 87 4443 26699999975
Q ss_pred cccccCCH-------HHHHHHHHhhccCCcEEEEEecCcc
Q 022305 207 SVDYLTKP-------IEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 207 ~l~~~~d~-------~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.- --+++ .++|+-+.+.|++ |.|++-+-.+.
T Consensus 153 ge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 153 GE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp CC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred CC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 54 22332 2366677889999 78888766544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.0083 Score=52.73 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=39.2
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
+.+++...+....|||+.||+|+........+.+++|+|+++.+++.++++
T Consensus 203 ~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r 253 (260)
T 1g60_A 203 ERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (260)
T ss_dssp HHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 334444455667899999999986666555678999999999999877654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.17 Score=45.65 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=68.6
Q ss_pred hcCCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcC-----------CCCcEEEeccCCCCCC-------CCCC
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNP-----------VLTEYVVQDLNLNPKL-------PFED 196 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~-----------~~~~~~~~D~~~~~~l-------pf~~ 196 (299)
.....|+++|||-=+..+....+ +.+++-|| -|..++..+ .+..++.+|+.. .+ .|..
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d--~~~~~l~~~g~d~ 177 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ--DWPPALRSAGFDP 177 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS--CHHHHHHHTTCCT
T ss_pred hCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh--hHHHHHHhccCCC
Confidence 34567999999855544444333 47999999 477776332 235678888842 21 1222
Q ss_pred CCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 197 NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+.-=++++-.+++|++ +...+++.+...+.||+.++++..+.
T Consensus 178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 3344778888999996 45678899999889999999997654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.03 Score=50.05 Aligned_cols=56 Identities=21% Similarity=0.426 Sum_probs=38.2
Q ss_pred CcEEEeccCCCCC-CC-CCCCCeeEEEecccc----c----------------ccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 179 TEYVVQDLNLNPK-LP-FEDNSFDVITNVVSV----D----------------YLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 179 ~~~~~~D~~~~~~-lp-f~~~~FD~Vis~~~l----~----------------~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.+++++|. .+ ++ +++++||+|+++==. . ++.....+++++.|+|||||.+++.+.
T Consensus 22 ~~i~~gD~---~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 22 HRLHVGDA---REVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp EEEEESCH---HHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEECcH---HHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 46778887 33 22 467889999976211 1 111235678899999999999988876
Q ss_pred C
Q 022305 237 N 237 (299)
Q Consensus 237 ~ 237 (299)
.
T Consensus 99 d 99 (297)
T 2zig_A 99 D 99 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.94 E-value=0.075 Score=43.96 Aligned_cols=87 Identities=25% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----C-CCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----P-FEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----p-f~~~~FD~Vis~~~ 207 (299)
.++||-.|++.|.+.... ...+.+|+++|.+++.++.+++. .+. ..|... ... . ...+.+|+|+.+..
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g 116 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY-VGDSRS-VDFADEILELTDGYGVDVVLNSLA 116 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE-EEETTC-STHHHHHHHHTTTCCEEEEEECCC
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE-EeeCCc-HHHHHHHHHHhCCCCCeEEEECCc
Confidence 357999996555433221 12367999999999888766543 222 234411 111 0 12246999997643
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+++..+.|+|||.+++
T Consensus 117 -------~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 117 -------GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp -------THHHHHHHHTEEEEEEEEE
T ss_pred -------hHHHHHHHHHhccCCEEEE
Confidence 2467899999999998765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.17 Score=46.30 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=52.4
Q ss_pred ccHHHHHHhh-hcCCceeeccCcCCc--cccCCC-CCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCC--CC
Q 022305 126 IDDPAIAALT-KYYSEVFPPSNTPGV--SHFPPG-YKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP--FE 195 (299)
Q Consensus 126 l~~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~-~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lp--f~ 195 (299)
+-++.++.|. +....++|..||.|. ..++.. .+.++|+|+|.++.+++.+++ +++++.++. .++. .+
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF---~~l~~~L~ 121 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPF---SALGEYVA 121 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCG---GGHHHHHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCH---HHHHHHHH
Confidence 3455677774 445689999999885 333333 356899999999999998753 356777776 4442 11
Q ss_pred ----CCCeeEEEec
Q 022305 196 ----DNSFDVITNV 205 (299)
Q Consensus 196 ----~~~FD~Vis~ 205 (299)
.+++|.|+..
T Consensus 122 ~~g~~~~vDgILfD 135 (347)
T 3tka_A 122 ERDLIGKIDGILLD 135 (347)
T ss_dssp HTTCTTCEEEEEEE
T ss_pred hcCCCCcccEEEEC
Confidence 1369999844
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=89.60 E-value=0.35 Score=44.09 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=64.9
Q ss_pred cCCceeeccCcCCccccCCCC--CCCeEEEEeCCHHHHHhc-----------------------------CCCCcEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPPGY--KQDRIVGMGMNEEELKRN-----------------------------PVLTEYVVQD 185 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~--~~~~v~gvD~S~~ml~~a-----------------------------~~~~~~~~~D 185 (299)
....|+.+|||..+..+.... ++..++-||. |++++.- ..+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 346799999998875554332 4678888898 6665421 1346678888
Q ss_pred cCCC-------CCCCCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEE-EEEecC
Q 022305 186 LNLN-------PKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLA-IVSFSN 237 (299)
Q Consensus 186 ~~~~-------~~lpf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~l-ii~~~~ 237 (299)
+... ...+ ..+...++++-.++.|++ +..++++.+.+.. |+|.+ +++..+
T Consensus 176 L~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 176 LNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp TTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 8321 1112 335678999999999996 4567888888877 67755 566443
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=0.17 Score=44.56 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHHhhhcCCceeeccCcCCccccC---------CCCCCCeEEEEe-----CCH----------------------HHHHh
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFP---------PGYKQDRIVGMG-----MNE----------------------EELKR 174 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~---------~~~~~~~v~gvD-----~S~----------------------~ml~~ 174 (299)
.+.+......|++.|+-.|.+... ...+..+++|.| +.+ +.++.
T Consensus 63 ~~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~ 142 (257)
T 3tos_A 63 YRQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKE 142 (257)
T ss_dssp HHHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHH
T ss_pred HHHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHH
Confidence 344456678899999987752221 112457899998 321 11110
Q ss_pred -----------c--CCCCcEEEeccCCCCCCC-----CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 175 -----------N--PVLTEYVVQDLNLNPKLP-----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 175 -----------a--~~~~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
. .++++++.+++. +.+| .+..+||+|+.-.- +...-...++.+...|+|||+++++.-
T Consensus 143 ~l~~~~~~~~~g~~~~~i~li~G~~~--dTL~~~l~~~~~~~~dlv~ID~D--~Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 143 VLDAHECSDFFGHVTQRSVLVEGDVR--ETVPRYLAENPQTVIALAYFDLD--LYEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp HHHHHHTTSTTTTSCCSEEEEESCHH--HHHHHHHHHCTTCCEEEEEECCC--CHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred HHHHHhhhhhcCCCCCcEEEEEecHH--HHHHHHHHhCCCCceEEEEEcCc--ccchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0 134788888874 4444 24557999987642 223445678999999999999999754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.07 E-value=0.28 Score=44.30 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=38.9
Q ss_pred CcEEEeccCCCCCCC-CCCCCeeEEEec--ccc------------cccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 179 TEYVVQDLNLNPKLP-FEDNSFDVITNV--VSV------------DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 179 ~~~~~~D~~~~~~lp-f~~~~FD~Vis~--~~l------------~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..++++|.. +.+. +++++||+|++. +.. +++......|+++.|+|||||.+++....
T Consensus 15 ~~ii~gD~~--~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 15 GSMYIGDSL--ELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp EEEEESCHH--HHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ceEEeCcHH--HHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 556777762 1233 457889998875 111 12234678999999999999999998664
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.98 E-value=0.13 Score=46.58 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=40.3
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
..++....+..+.|||.-||+|+........+.+.+|+|+++.+.+.++++
T Consensus 243 ~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r 293 (323)
T 1boo_A 243 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR 293 (323)
T ss_dssp HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 444555556667899999999996666665688999999999999887764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=0.12 Score=46.75 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=34.3
Q ss_pred CcEEEeccCCCCCCC-CCCCCeeEEEecccccccCCH----HHHHHHHHhhccCCcEEE
Q 022305 179 TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKP----IEVFKEMCQVLKPGGLAI 232 (299)
Q Consensus 179 ~~~~~~D~~~~~~lp-f~~~~FD~Vis~~~l~~~~d~----~~~l~ei~rvLkpGG~li 232 (299)
.++..+|+. +.++ +++..||+|+--. +---.+| ..+|++|++.++|||.+.
T Consensus 168 L~l~~GDa~--~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 168 LKVLLGDAR--KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp EEEEESCHH--HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred EEEEechHH--HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 356677773 3344 3455799998632 2222344 589999999999999775
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=0.22 Score=44.81 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=55.3
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----CCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~l 208 (299)
.+++|-.|++.|.+.... ...+++|+++|.+++.++.+++. .. ...|....+.+ ....+.+|+|+.+..-
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 224 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD-AAFNYKTVNSLEEALKKASPDGYDCYFDNVGG 224 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCc-EEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence 467999998655533321 22467999999999888776443 22 23354210111 0112479999977652
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
..+++..+.|+|||.+++
T Consensus 225 -------~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 225 -------EFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp -------HHHHHHHTTEEEEEEEEE
T ss_pred -------HHHHHHHHHHhcCCEEEE
Confidence 357888999999998765
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=85.02 E-value=0.56 Score=43.29 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=57.1
Q ss_pred cCCceeeccCcC-Ccc--ccCCCCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-C-----C-CCCCeeEEEe
Q 022305 137 YYSEVFPPSNTP-GVS--HFPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-P-----F-EDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~-G~~--~~~~~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-p-----f-~~~~FD~Vis 204 (299)
..++||-+|+|. |.. .++.. .++ +|+++|.|++.++.+++. .+ ..|... +++ . . ....||+|+-
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~--~i~~~~-~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARL-LGAACVIVGDQNPERLKLLSDAGFE--TIDLRN-SAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHHHTTTCE--EEETTS-SSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHcCCc--EEcCCC-cchHHHHHHHHhCCCCCCEEEE
Confidence 346899999852 321 11222 355 899999999998888764 33 334310 111 0 0 1236999996
Q ss_pred ccccccc--------CCHHHHHHHHHhhccCCcEEEE
Q 022305 205 VVSVDYL--------TKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 205 ~~~l~~~--------~d~~~~l~ei~rvLkpGG~lii 233 (299)
...-... .++...+++..+.|+|||.+++
T Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp CSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred CCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 6543321 1244678999999999998765
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=0.41 Score=42.99 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=55.7
Q ss_pred cCCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhc-CCC-CcEEEeccCCCCCCC-----CCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRN-PVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a-~~~-~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~ 206 (299)
.-++||-.|++.|.+.... ...+++|+++|.+++-++.+ ++. .+. ..|... +.+. ...+.+|+|+.+.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~d~vi~~~ 226 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDG-AIDYKN-EDLAAGLKRECPKGIDVFFDNV 226 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSE-EEETTT-SCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCE-EEECCC-HHHHHHHHHhcCCCceEEEECC
Confidence 3467999998555533321 22467999999999888877 443 222 223310 1110 1134699998765
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.- ..+.+..+.|++||.+++
T Consensus 227 g~-------~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 227 GG-------EILDTVLTRIAFKARIVL 246 (336)
T ss_dssp CH-------HHHHHHHTTEEEEEEEEE
T ss_pred Cc-------chHHHHHHHHhhCCEEEE
Confidence 42 368899999999998775
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=0.28 Score=44.45 Aligned_cols=89 Identities=11% Similarity=0.196 Sum_probs=56.4
Q ss_pred cCCceeeccCcCCccccCC---CCC-CCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC-----CCCC-CCeeEEEec
Q 022305 137 YYSEVFPPSNTPGVSHFPP---GYK-QDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFED-NSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~---~~~-~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l-----pf~~-~~FD~Vis~ 205 (299)
..++||-.|+|+|.+.... ... +++|+++|.+++.++.+++. .+.+ .|... ... .... +.+|+|+.+
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYV-INASM-QDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEE-EETTT-SCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEE-ecCCC-ccHHHHHHHHhcCCCceEEEEC
Confidence 3467999998867644321 123 67999999999888776542 2222 23310 111 1112 479999976
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
..- ...+++..+.|+|||.+++
T Consensus 248 ~g~------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 248 NNS------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp CCC------HHHHTTGGGGEEEEEEEEE
T ss_pred CCC------HHHHHHHHHHHhcCCEEEE
Confidence 542 3467888999999998765
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.99 E-value=1 Score=41.44 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCceeeccCcCCccccCC---CCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC------CCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp------f~~~~FD~Vis~~ 206 (299)
..+||-.|+| |.+.+.. ...++ +|+++|.+++-++.+++. .+ ..|......+. .....+|+|+-..
T Consensus 186 g~~VlV~GaG-~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~ 262 (398)
T 1kol_A 186 GSTVYVAGAG-PVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCAVDAV 262 (398)
T ss_dssp TCEEEEECCS-HHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCEEEEECCc-HHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc--EEccCCcchHHHHHHHHhCCCCCCEEEECC
Confidence 4678888875 3322221 11355 799999999988887664 33 23331001010 1124699999654
Q ss_pred cc---------cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 SV---------DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ~l---------~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.- .|.+++...+++..++|++||.+++
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 263 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 42 2345667789999999999998765
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=81.44 E-value=0.91 Score=40.95 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCCCeeEEEec--cc---------ccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 195 EDNSFDVITNV--VS---------VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 195 ~~~~FD~Vis~--~~---------l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++++||+|++- +. -.++......|.++.|+|||||.+++....
T Consensus 55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~ 108 (319)
T 1eg2_A 55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 108 (319)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence 45677777753 11 112234567889999999999999887553
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=81.41 E-value=0.82 Score=41.07 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=55.1
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcC-CC-CcEEEeccCCCCCCC-----CCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNP-VL-TEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~-~~-~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~~ 207 (299)
.++||-.|++.|.+.... ...+++|+++|.+++-++.++ +. .+. ..|......+. ...+.+|+|+.+..
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g 234 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDD-AFNYKEESDLTAALKRCFPNGIDIYFENVG 234 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSE-EEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCce-EEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence 467999998555433321 124679999999998887765 32 222 23431101111 11246999987754
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
- ..+++..+.|++||.+++
T Consensus 235 ~-------~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 235 G-------KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp H-------HHHHHHHTTEEEEEEEEE
T ss_pred H-------HHHHHHHHHHhcCCEEEE
Confidence 2 368889999999998765
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=80.89 E-value=0.66 Score=41.80 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=54.5
Q ss_pred CCceeeccCcCCccccCC---CCCCC-eEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCC-----CCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQD-RIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-----FEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~-~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~~l 208 (299)
..+||-.|+| |.+.+.. ...+. +|+++|.+++-++.+++. --...|... +++. ...+.+|+|+....-
T Consensus 165 g~~VlV~GaG-~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~-~~~~~~~~~~~~~g~D~vid~~g~ 241 (343)
T 2dq4_A 165 GKSVLITGAG-PIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE-EDLLEVVRRVTGSGVEVLLEFSGN 241 (343)
T ss_dssp TSCEEEECCS-HHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT-SCHHHHHHHHHSSCEEEEEECSCC
T ss_pred CCEEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc-cCHHHHHHHhcCCCCCEEEECCCC
Confidence 4578888884 4433321 12356 899999999998888765 222334310 1110 012469999866432
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...+++..+.|++||.+++
T Consensus 242 ------~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 242 ------EAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp ------HHHHHHHHHHEEEEEEEEE
T ss_pred ------HHHHHHHHHHHhcCCEEEE
Confidence 3567889999999997765
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=80.89 E-value=0.17 Score=45.70 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=53.0
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC------CCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp------f~~~~FD~Vis~~~ 207 (299)
..+||-.|+|+|.+.... ...+++|+++|.+++-++.+++. .+.+ .|... ..+. .....+|+|+.+..
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~-~~~~~-~~~~~~~~~~~~~~g~Dvvid~~g 222 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYV-IDTST-APLYETVMELTNGIGADAAIDSIG 222 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEE-EETTT-SCHHHHHHHHTTTSCEEEEEESSC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEE-EeCCc-ccHHHHHHHHhCCCCCcEEEECCC
Confidence 468999999876644322 22467999999998877766553 2222 23210 1110 12347999997654
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
-. .+.+..+.|+|||.+++
T Consensus 223 ~~-------~~~~~~~~l~~~G~iv~ 241 (340)
T 3gms_A 223 GP-------DGNELAFSLRPNGHFLT 241 (340)
T ss_dssp HH-------HHHHHHHTEEEEEEEEE
T ss_pred Ch-------hHHHHHHHhcCCCEEEE
Confidence 32 22445589999998765
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.39 E-value=0.42 Score=43.18 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC-----CCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp-----f~~~~FD~Vis~~~l 208 (299)
-++||-.|++.|.+.... ...+.+|+++|.+++.++.+++. .+. ..|....+.+. ..++.+|+|+.+...
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEV-FIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCE-EEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCce-EEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 467999998655533321 12467999999998877766543 222 23542111111 011269999977542
Q ss_pred cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
...++++.+.|++||.+++
T Consensus 249 ------~~~~~~~~~~l~~~G~iv~ 267 (347)
T 2hcy_A 249 ------EAAIEASTRYVRANGTTVL 267 (347)
T ss_dssp ------HHHHHHHTTSEEEEEEEEE
T ss_pred ------HHHHHHHHHHHhcCCEEEE
Confidence 3578899999999997765
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.36 E-value=1.2 Score=35.21 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=31.1
Q ss_pred CCCCCCCeeEEEecccc--cccCCHHHHHHHHHhhccCCcEEEE
Q 022305 192 LPFEDNSFDVITNVVSV--DYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 192 lpf~~~~FD~Vis~~~l--~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
..+++++||.|+-..-- .+..=+.+++..+.+.|||||.|.-
T Consensus 53 VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 53 ITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred ccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 34678999998854322 2233458999999999999998865
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=80.31 E-value=0.26 Score=44.64 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCH---HHHHhcCCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNE---EELKRNPVLT 179 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~---~ml~~a~~~~ 179 (299)
+.++....+..+.|||.=||+|+........+.+.+|+|+++ ...+.+.+++
T Consensus 233 ~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 233 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHH
Confidence 344555555667899999999986666555578999999999 8888877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 299 | ||||
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 5e-04 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.003 |
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 2e-06
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 183 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 241
+ E +D I + + Y+ K +L + I+ S W
Sbjct: 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW 167
Query: 242 TK 243
K
Sbjct: 168 DK 169
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.8 bits (89), Expect = 5e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 186 LNLNPKLPFEDNSFDVITNVVSVDYLTKPI-------EVFKEMCQVLKPGGLAIVSFSNR 238
L L+ +P D VI S +L K + +++PGGL ++ N
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177
Query: 239 CF 240
+
Sbjct: 178 DY 179
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 35.9 bits (81), Expect = 0.003
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 193 PFEDNSFDVITNVVSVDYLTKPIE---VFKEMCQVLKPGGLAIVSFSNRCFWTK-AISIW 248
N FD +T S + +F ++ + LKPGG+ I F + + +W
Sbjct: 100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVW 159
Query: 249 TSTGDADHVMI 259
+ ++I
Sbjct: 160 NEQKGEEKLVI 170
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 299 | |||
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.83 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.8 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.76 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.75 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.73 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.72 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.7 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.69 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.68 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.67 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.62 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.59 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.55 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.54 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.54 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.53 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.52 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.52 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.52 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.52 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.52 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.46 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.46 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.44 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.41 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.41 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.41 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.38 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.3 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.26 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.21 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.2 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.14 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.12 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.11 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.09 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.09 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.03 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.95 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.84 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.83 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.8 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.69 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.68 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.64 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.56 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.53 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.52 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.44 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.42 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.38 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.38 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.33 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.31 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.3 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.28 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.27 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.11 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.11 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.1 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.03 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.97 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.92 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.88 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.87 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.86 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.86 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.8 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.79 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.77 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.49 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.46 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.43 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.42 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.2 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.13 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.1 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.05 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.95 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.95 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.9 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.35 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.11 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.89 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.67 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.61 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.43 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 94.04 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.1 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.72 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 91.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.7 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.54 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 89.25 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 89.15 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 85.94 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 85.78 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.62 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 84.68 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 84.5 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.81 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.78 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.76 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.05 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.45 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 81.02 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 80.97 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 80.53 |
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=2e-23 Score=177.98 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=111.7
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCHHH
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 216 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~ 216 (299)
..+|||+|||+|...... .+++|||+|+.|++.++++ ++++++|+ +++|+++++||+|+|..+|+|++|+.+
T Consensus 37 ~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~~~~~~~~d~---~~l~~~~~~fD~I~~~~~l~h~~d~~~ 109 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVTTICFVDDPER 109 (208)
T ss_dssp SSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCeEEEECCCCccccccc----ceEEEEeCChhhcccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 358999999999533322 4579999999999998874 89999999 899999999999999999999999999
Q ss_pred HHHHHHhhccCCcEEEEEecCcchH-HHH-HHhhhhcCCCchhhh-----HHHHHHHhCCCCCCeeeecCCC--------
Q 022305 217 VFKEMCQVLKPGGLAIVSFSNRCFW-TKA-ISIWTSTGDADHVMI-----VGAYFHYAGGYEPPQAVDISPN-------- 281 (299)
Q Consensus 217 ~l~ei~rvLkpGG~lii~~~~~~~~-~~~-~~~~~~~~~~~~~~~-----~~~~~~~~aGF~~v~~~~~~~~-------- 281 (299)
+|++++|+|||||.+++.+++...+ ... ...+.......+..+ +.+++ .++||+.+++......
T Consensus 110 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l-~~~Gf~~i~v~~~~~~~p~~~~~~ 188 (208)
T d1vlma_ 110 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM-RKAGFEEFKVVQTLFKHPSELSEI 188 (208)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHH-HHTTCEEEEEEEECCSCGGGCSSC
T ss_pred chhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHH-HHcCCeEEEEEEEecCCccchhhh
Confidence 9999999999999999998875543 222 222222222233222 23334 5699998877654211
Q ss_pred -C----CCCCCeEEEEEEec
Q 022305 282 -P----GRSDPMYVVYSRKA 296 (299)
Q Consensus 282 -~----~~~~p~~~v~arK~ 296 (299)
+ .+...++++.|+|.
T Consensus 189 ~~~~~~~~~~~f~~~~a~K~ 208 (208)
T d1vlma_ 189 EPVKEGYGEGAFVVIRGTKK 208 (208)
T ss_dssp CCCEESSSSSSEEEEEEECC
T ss_pred hHHHcCCCCccEEEEEEEeC
Confidence 1 23457788889884
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.85 E-value=2.3e-22 Score=173.60 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=99.5
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
+.-.+|||+|||+|.........+.+|+|+|+|++|++.|++ +++++++|. +++|+++++||+|+|..+
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l~~~~~~fD~v~~~~~ 90 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCRIA 90 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccc---cccccccccccccccccc
Confidence 445789999999997444433446799999999999998754 378999999 899999999999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecC---cchHHHHHHhhhhcCCCchhh-----hHHHHHHHhCCCCCCeeee
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RCFWTKAISIWTSTGDADHVM-----IVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~aGF~~v~~~~ 277 (299)
++|++|+.++|++++|+|||||+++|.... ...+......+.......|.+ -+.+.+ +.+||+.+++..
T Consensus 91 l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 91 AHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKML-EEAGFELEELHC 167 (231)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHH-HHHTCEEEEEEE
T ss_pred ccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHH-HHCCCEEEEEEE
Confidence 999999999999999999999988876432 223333332222221222221 122333 558998776543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=6.1e-22 Score=171.81 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=90.2
Q ss_pred HHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCCCCCCCeeEEEec-cc
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNV-VS 207 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lpf~~~~FD~Vis~-~~ 207 (299)
+........+|||+|||+|.........+.+|+|+|+|+.|++.|+++ ..++.+|+ +++++++++||+|+|. .+
T Consensus 36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l~~~~~~fD~ii~~~~~ 112 (246)
T d2avna1 36 LEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA---EDLPFPSGAFEAVLALGDV 112 (246)
T ss_dssp HHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCT---TSCCSCTTCEEEEEECSSH
T ss_pred HHHhcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccc---cccccccccccceeeecch
Confidence 334444557899999999975554455678999999999999998875 46888999 8999999999999985 68
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
+||++|+.++|+++.|+|||||.+++++++..
T Consensus 113 ~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~~ 144 (246)
T d2avna1 113 LSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 144 (246)
T ss_dssp HHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred hhhhhhHHHHHHHHHhhcCcCcEEEEEECCHH
Confidence 99999999999999999999999999998743
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=6.1e-22 Score=172.09 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=84.7
Q ss_pred hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 136 KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
+.-.+|||+|||+|.........+.+|+|||+|+.|++.|++ ++.++++|+ +++||++++||+|+|.++
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~ 91 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFPDDSFDIITCRYA 91 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccc---ccccccccccceeeeece
Confidence 456799999999997444443346799999999999987754 378999999 899999999999999999
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
++|++|+.++|++++|+|||||.+++..
T Consensus 92 l~~~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 92 AHHFSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999999999999999999888864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=1e-20 Score=161.93 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=87.5
Q ss_pred HHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
+.+..+.-.+|||+|||+|.........+.+|+|+|+|++|++.|++ .+.++.+|+ +++++++++||+|+
T Consensus 31 ~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 31 LMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKLSFEDKTFDYVI 107 (226)
T ss_dssp HHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSCCSCTTCEEEEE
T ss_pred HHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccccc---ccccccCcCceEEE
Confidence 33333445789999999997444444457899999999999988765 377889999 89999999999999
Q ss_pred ecccccccC--CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|..+++|++ |+.++|+++.|+|||||.++|.+++
T Consensus 108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999997 7788999999999999999998776
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=1.1e-20 Score=168.56 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=100.8
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...... ...+++|+|+|+|+.|++.|++ +++++++|+ +++|+++++||+|+|..
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEEES
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccc---ccccccccccchhhccc
Confidence 4579999999999633222 2236799999999999987764 478999999 89999999999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc------chHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR------CFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
+++|++|+.++|++++|+|||||.+++..+.. .........+.... ......+...+ +.+||+.+.+.+.
T Consensus 144 ~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~l-~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 144 AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHD-MGSLGLYRSLA-KECGLVTLRTFSR 219 (282)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSS-CCCHHHHHHHH-HHTTEEEEEEEEC
T ss_pred hhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCC-CCCHHHHHHHH-HHcCCceEEEEEC
Confidence 99999999999999999999999988874321 12222222222211 11122233333 5699998888876
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.77 E-value=1.4e-19 Score=156.40 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=89.0
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
..+|||+|||+|.........+.+|+|||+|++|++.|++ +++++.+|+ +.+++ +++||+|+|..+++|++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~~~~~-~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF---EDAQL-PRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGCCC-SSCEEEEEEESCGGGCSS
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccc---ccccc-ccccccccccceeEecCC
Confidence 4689999999997444444456799999999999998864 378889998 67766 578999999999999999
Q ss_pred HHHHHHHHH-hhccCCcEEEEEecCcchHHHHHHhh
Q 022305 214 PIEVFKEMC-QVLKPGGLAIVSFSNRCFWTKAISIW 248 (299)
Q Consensus 214 ~~~~l~ei~-rvLkpGG~lii~~~~~~~~~~~~~~~ 248 (299)
+..+|+++. |+|||||.++++++|...+......|
T Consensus 97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~ 132 (225)
T d2p7ia1 97 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVK 132 (225)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHH
Confidence 999999998 89999999999999976655544443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.8e-19 Score=152.49 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=99.2
Q ss_pred CceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 139 SEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
.+|||+|||+|.... .......+|+|||+|++|++.|+++ ++|+++|+ +++++++++||+|++..+++
T Consensus 62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~---~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSCEEEEEEESCGG
T ss_pred CEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccc---cccccccccccccccccccc
Confidence 579999999996433 2233346899999999999987652 57899999 88999999999999999999
Q ss_pred ccCCH--HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhh---hHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 210 YLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVM---IVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 210 ~~~d~--~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
|++++ .++|++++++|||||.+++..+.... ..+....+..+.+ .+.+.+ ..+||+.++......-|..
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~-~~aGf~ii~~~~q~~fP~~ 212 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-----GVILDDVDSSVCRDLDVVRRII-CSAGLSLLAEERQENLPDE 212 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-----SEEEETTTTEEEEBHHHHHHHH-HHTTCCEEEEEECCSCCTT
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEccccc-----ccccccCCceeeCCHHHHHHHH-HHcCCEEEEEEEeCCCCcc
Confidence 99876 48999999999999999887543211 0011111112211 223333 5699998887665433333
Q ss_pred CCCeE
Q 022305 285 SDPMY 289 (299)
Q Consensus 285 ~~p~~ 289 (299)
..|.+
T Consensus 213 ~~~v~ 217 (222)
T d2ex4a1 213 IYHVY 217 (222)
T ss_dssp SCEEE
T ss_pred hhEEE
Confidence 33443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.5e-19 Score=156.49 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=98.2
Q ss_pred cCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|...... ...+++|+|||+|+.|++.|++ +++|+++|+ +.+ +.+++||+|+|..
T Consensus 33 pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~---~~~-~~~~~fD~v~~~~ 108 (245)
T d1nkva_ 33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGY-VANEKCDVAACVG 108 (245)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTC-CCSSCEEEEEEES
T ss_pred CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH---hhc-cccCceeEEEEEe
Confidence 4578999999999633322 2246899999999999987655 278999999 776 4688999999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCc---chHHHHHHhhhhcCCCchhhhHHHHHH--HhCCCCCCeeeec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEPPQAVDI 278 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~aGF~~v~~~~~ 278 (299)
+++|++|+.+++++++|+|||||.+++..+.. .........|..... ........+.. ..+||+.++.+..
T Consensus 109 ~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 109 ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSST-SDFLTLPGLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCG-GGSCCHHHHHHHHHTTTBCCCEEEEC
T ss_pred hhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCC-cccCCHHHHHHHHHHcCCEEEEEEeC
Confidence 99999999999999999999999999986541 112222233332211 11112222222 6699998876554
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.75 E-value=1e-19 Score=158.83 Aligned_cols=97 Identities=21% Similarity=0.281 Sum_probs=80.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEec-cccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNV-VSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~-~~l~ 209 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.|++ +++++++|+ ..+++ +++||+|+|. .+++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI---SNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG---GGCCC-SCCEEEEEECTTGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccch---hhhcc-cccccccceeeeeee
Confidence 4689999999998555555567899999999999998765 388999999 77776 4689999986 6788
Q ss_pred ccC---CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 210 YLT---KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 210 ~~~---d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|+. ++.++|++++++|||||.|++++.+.
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 875 55679999999999999999987654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.73 E-value=4.3e-18 Score=146.62 Aligned_cols=101 Identities=13% Similarity=0.181 Sum_probs=77.0
Q ss_pred HhhhcCCceeeccCcCCcccc--C--CCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeE
Q 022305 133 ALTKYYSEVFPPSNTPGVSHF--P--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 133 ~l~~~~~~vLDiGcG~G~~~~--~--~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
...+...+|||+|||+|.... . ...++.+|+|+|+|+.|++.|+++ ..+...+. ...+++.+.+|+
T Consensus 35 ~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~---d~~~~~~~~~d~ 111 (225)
T d1im8a_ 35 RFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DIRHVEIKNASM 111 (225)
T ss_dssp HHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS---CTTTCCCCSEEE
T ss_pred HhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc---hhhcccccccee
Confidence 334456789999999996332 2 234688999999999999988752 23333333 234556678999
Q ss_pred EEecccccccC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 202 ITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 202 Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+|+.++||++ |+.++|++++|+|||||.+++...
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 99999999994 788999999999999999988743
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2e-18 Score=153.16 Aligned_cols=109 Identities=19% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHhhhcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCC---CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 130 AIAALTKYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~---~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+.+.+.....+|||+|||+|.. .+....++.+++|+|+|+.|++.|++ ++++.++|+ +++|+++++||+|++
T Consensus 77 l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 77 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRLPFSDTSMDAIIR 153 (268)
T ss_dssp HHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSCSBCTTCEEEEEE
T ss_pred HHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh---hhccCCCCCEEEEee
Confidence 3444455667999999999963 34455678899999999999998875 489999999 899999999999999
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhh
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW 248 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~ 248 (299)
.++++| ++|+.|+|||||.+++.++++....+....+
T Consensus 154 ~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~ 190 (268)
T d1p91a_ 154 IYAPCK-------AEELARVVKPGGWVITATPGPRHLMELKGLI 190 (268)
T ss_dssp ESCCCC-------HHHHHHHEEEEEEEEEEEECTTTTHHHHTTT
T ss_pred cCCHHH-------HHHHHHHhCCCcEEEEEeeCCcchHHHHHHh
Confidence 999887 4799999999999999999877666654443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.70 E-value=1.6e-17 Score=148.26 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=81.7
Q ss_pred cCCceeeccCcCCcc--ccCCCCC-CCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVS--HFPPGYK-QDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~--~~~~~~~-~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
...+|||+|||+|.. .+....+ +.+|+|+|+|+.|++.|+++ ++|+++|+ +.++++ ++||+|+|..
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~---~~~~~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEIELN-DKYDIAICHA 102 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT---TTCCCS-SCEEEEEEES
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc---cccccc-CCceEEEEeh
Confidence 346899999999963 2343333 57999999999999987652 67899999 788885 4699999999
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++|++|+..+|++++++|||||.+++..++
T Consensus 103 ~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 103 FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999999999999999999999999887764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=5.9e-19 Score=153.74 Aligned_cols=96 Identities=24% Similarity=0.462 Sum_probs=80.5
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEEec-cccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNV-VSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vis~-~~l~ 209 (299)
..+|||+|||+|.........+.+|+|||+|++|++.|++ ++++.++|+ ++++++ ++||+|+|. .+++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~---~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhh---hhcccc-cccchHhhhhhhhh
Confidence 4579999999997555444457899999999999998765 378999999 889987 579999986 5777
Q ss_pred cc--CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 210 YL--TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 210 ~~--~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+ +++.++|++++++|||||.+++++++
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 77 36679999999999999999998765
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=9.4e-18 Score=141.80 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
..+|||+|||+|.........+.+|+|+|+|+.|++.+++ .+++...|+ ..+++ +++||+|+|..+++
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~---~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL---NTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT---TTCCC-CCCEEEEEEESCGG
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheec---ccccc-cccccEEEEeeeee
Confidence 4699999999997554444457899999999999997653 267788888 77776 67899999999999
Q ss_pred ccCC--HHHHHHHHHhhccCCcEEEEEec
Q 022305 210 YLTK--PIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 210 ~~~d--~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
|+++ ..++++++.++|||||++++...
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9964 46899999999999998888643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5e-18 Score=148.27 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=99.7
Q ss_pred CceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCCC--------------------------------------
Q 022305 139 SEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVLT-------------------------------------- 179 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~~-------------------------------------- 179 (299)
.+|||+|||+|.-.+..... ..+|+|+|+|+.|++.|++++
T Consensus 53 ~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (257)
T d2a14a1 53 DTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVK 132 (257)
T ss_dssp EEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEE
T ss_pred CEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhh
Confidence 47999999999643333323 347999999999999775421
Q ss_pred cEEEeccC-CCCCCCCCCCCeeEEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCC
Q 022305 180 EYVVQDLN-LNPKLPFEDNSFDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA 254 (299)
Q Consensus 180 ~~~~~D~~-~~~~lpf~~~~FD~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~ 254 (299)
.....+.. .....++.+++||+|++.+++||+. ++..++++++|+|||||++++.............. ......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~-~~~~~~ 211 (257)
T d2a14a1 133 RVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR-EFSCVA 211 (257)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE-EEECCC
T ss_pred cccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccc-cccccC
Confidence 01111111 0123467889999999999999995 56789999999999999999876542211000000 000001
Q ss_pred chhhhHHHHHHHhCCCCCCeeeecCCC----CCCCCCeEEEEEEecC
Q 022305 255 DHVMIVGAYFHYAGGYEPPQAVDISPN----PGRSDPMYVVYSRKAS 297 (299)
Q Consensus 255 ~~~~~~~~~~~~~aGF~~v~~~~~~~~----~~~~~p~~~v~arK~~ 297 (299)
-....+.+.+ +.+||+.+++...... .....+.+.|+|||.+
T Consensus 212 ~~~~~~~~~l-~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp 257 (257)
T d2a14a1 212 LEKGEVEQAV-LDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 257 (257)
T ss_dssp CCHHHHHHHH-HHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred CCHHHHHHHH-HHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence 1123344444 5699997776544322 2345688999999964
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.68 E-value=8.1e-18 Score=147.49 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=85.3
Q ss_pred HHHHhhhcCCceeeccCcCCccccCCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCC-CCCC
Q 022305 130 AIAALTKYYSEVFPPSNTPGVSHFPPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF-EDNS 198 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~~~~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf-~~~~ 198 (299)
+++...+...+|||+|||+|........ ...+|+|+|+|+.|++.|++ ++.+.++|+ ...++ .+++
T Consensus 17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~---~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKE 93 (252)
T ss_dssp HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSC
T ss_pred HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch---hhhccccccc
Confidence 4555556667999999999964333222 34689999999999988753 267889998 66665 4678
Q ss_pred eeEEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecCcchH
Q 022305 199 FDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNRCFW 241 (299)
Q Consensus 199 FD~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~~~~~ 241 (299)
||+|+|..++||+. +...+|+++.|+|||||++++++++....
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i 140 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence 99999999999984 34679999999999999999998875443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.67 E-value=1.4e-17 Score=146.53 Aligned_cols=144 Identities=14% Similarity=0.074 Sum_probs=98.2
Q ss_pred cCCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCCC------CcEEEeccCCCCCCCCCCCCeeEEEeccccc
Q 022305 137 YYSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 209 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~~------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~ 209 (299)
...+|||+|||+|..... ......+|+|||+|+.|++.|+++ +++.++|+ +++++++++||+|+|..+++
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccc---cccccCCCccceEEeecccc
Confidence 346899999999963322 111245899999999999988652 67899999 88999999999999999999
Q ss_pred ccCCH--HHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCch---hhhHHHHHHHhCCCCCCeeeecCCCCCC
Q 022305 210 YLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH---VMIVGAYFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 210 ~~~d~--~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
|++|+ .++|++++++|||||.++|..+...... ..+. ..+..+ ...+.+.| .++||+.++...-..-|..
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~---~~~d-~~d~~~~rs~~~~~~l~-~~aGf~ii~~~~q~~fP~~ 244 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---FLVD-KEDSSLTRSDIHYKRLF-NESGVRVVKEAFQEEWPTD 244 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---EEEE-TTTTEEEBCHHHHHHHH-HHHTCCEEEEEECTTCCTT
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCc---ceec-ccCCceeCCHHHHHHHH-HHcCCEEEEEEeeCCCCcc
Confidence 99875 4889999999999999998654211000 0000 011111 12334444 4589998876554333433
Q ss_pred CCCe
Q 022305 285 SDPM 288 (299)
Q Consensus 285 ~~p~ 288 (299)
.-|.
T Consensus 245 l~~V 248 (254)
T d1xtpa_ 245 LFPL 248 (254)
T ss_dssp SCCE
T ss_pred ceEE
Confidence 3444
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=9.2e-17 Score=141.85 Aligned_cols=156 Identities=10% Similarity=0.073 Sum_probs=97.2
Q ss_pred CCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC--------------------------------------
Q 022305 138 YSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------------------------------------- 178 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~-------------------------------------- 178 (299)
..++||+|||+|...+ .......+|+|+|+|+.|++.+++.
T Consensus 55 g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV 134 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE
T ss_pred CcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhh
Confidence 4589999999996443 3333346899999999999976531
Q ss_pred CcEEEeccCCC---CCCCCCCCCeeEEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecCcch-HHHHHHhhhh
Q 022305 179 TEYVVQDLNLN---PKLPFEDNSFDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNRCF-WTKAISIWTS 250 (299)
Q Consensus 179 ~~~~~~D~~~~---~~lpf~~~~FD~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~~~~-~~~~~~~~~~ 250 (299)
.....+|+... ...++++++||+|++.+++||+. ++.+++++++++|||||++++....... +......+..
T Consensus 135 ~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~ 214 (263)
T d2g72a1 135 KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 214 (263)
T ss_dssp EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEEC
T ss_pred hccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccccc
Confidence 11234555321 12345567899999999999995 5678999999999999998886543211 1000000000
Q ss_pred cCCCchhhhHHHHHHHhCCCCCCeeeecCC-C---CC--CCCCeEEEEEEec
Q 022305 251 TGDADHVMIVGAYFHYAGGYEPPQAVDISP-N---PG--RSDPMYVVYSRKA 296 (299)
Q Consensus 251 ~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~-~---~~--~~~p~~~v~arK~ 296 (299)
. .-....+.+.+ ..+||+.++...... . .+ .-+.++.++|||.
T Consensus 215 ~--~~t~e~v~~~l-~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK~ 263 (263)
T d2g72a1 215 V--PVSEEEVREAL-VRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKV 263 (263)
T ss_dssp C--CCCHHHHHHHH-HHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEEC
T ss_pred C--CCCHHHHHHHH-HHCCCeEEEEEEeeccCcccccccccceEEEEEEEeC
Confidence 0 01112334444 569999776543321 1 12 2346789999994
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.59 E-value=6.6e-16 Score=133.88 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=101.9
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
+...+|||+|||+|+ .+++...++..|+|+|+|+.|++.+++ ++..+.+|.. ...++.+..+|++++...
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~--~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN--KPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT--CGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec--cCcccccccceeEEeecc
Confidence 345789999999997 555555567899999999999986543 3567777773 233466788898888888
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHH---HHHHhCCCCCCeeeecCCCCCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA---YFHYAGGYEPPQAVDISPNPGR 284 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~aGF~~v~~~~~~~~~~~ 284 (299)
++|.+++..+++++.+.|||||.+++.....+ ......+-..+.+ .+ +++||+.++.+++.| .
T Consensus 151 ~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~----------~d~~~~~~~~~~e~~~~L-~~aGF~ive~idL~p---y 216 (230)
T d1g8sa_ 151 VAQPNQAEILIKNAKWFLKKGGYGMIAIKARS----------IDVTKDPKEIFKEQKEIL-EAGGFKIVDEVDIEP---F 216 (230)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG----------TCSSSCHHHHHHHHHHHH-HHHTEEEEEEEECTT---T
T ss_pred ccchHHHHHHHHHHHHhcccCceEEEEeeccc----------cCCCCCHHHHHHHHHHHH-HHcCCEEEEEecCCC---C
Confidence 99999999999999999999999888753221 1111111112222 23 468999999988764 2
Q ss_pred CCCeEEEEEEe
Q 022305 285 SDPMYVVYSRK 295 (299)
Q Consensus 285 ~~p~~~v~arK 295 (299)
...+++|+++-
T Consensus 217 ~~~H~~vvg~y 227 (230)
T d1g8sa_ 217 EKDHVMFVGIW 227 (230)
T ss_dssp STTEEEEEEEE
T ss_pred cCCeEEEEEEe
Confidence 34477777764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.58 E-value=1.5e-15 Score=133.08 Aligned_cols=152 Identities=11% Similarity=0.107 Sum_probs=100.0
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
....+|||+|||+|. ..+...+++.+++++|+ ++|++.+++ +++++.+|+ .+ +. ..+||+|++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~-~~-~~~~D~v~~ 152 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF---FE-PL-PRKADAIIL 152 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT---TS-CC-SSCEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccc---hh-hc-ccchhheee
Confidence 345789999999996 44455667899999998 567775543 378899997 33 22 356999999
Q ss_pred cccccccCCH--HHHHHHHHhhccCCcEEEEEecC---cchH---HHH--HHhhhhcCCCch-hhhHHHHHHHhCCCCCC
Q 022305 205 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN---RCFW---TKA--ISIWTSTGDADH-VMIVGAYFHYAGGYEPP 273 (299)
Q Consensus 205 ~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~---~~~~---~~~--~~~~~~~~~~~~-~~~~~~~~~~~aGF~~v 273 (299)
.+++||++|. .++|++++|+|||||.++|.... .... ... +..+...+...+ ..-+...+ +++||+.+
T Consensus 153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll-~~AGf~~~ 231 (253)
T d1tw3a2 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLA-ASAGLVVE 231 (253)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHH-HHTTEEEE
T ss_pred ccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHH-HHCCCeEE
Confidence 9999999866 47899999999999987775322 1111 111 112222222221 22233344 56999999
Q ss_pred eeeecCCCCCCCCCe-EEEEEEecC
Q 022305 274 QAVDISPNPGRSDPM-YVVYSRKAS 297 (299)
Q Consensus 274 ~~~~~~~~~~~~~p~-~~v~arK~~ 297 (299)
++..++. ...|+ ..+++.+|+
T Consensus 232 ~v~~~~~---p~~~~~~~li~~~PA 253 (253)
T d1tw3a2 232 EVRQLPS---PTIPYDLSLLVLAPA 253 (253)
T ss_dssp EEEEEEC---SSSSCEEEEEEEEEC
T ss_pred EEEECCC---CCCCccEEEEEEecC
Confidence 8887753 23455 456666653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.55 E-value=3.2e-16 Score=130.39 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=79.9
Q ss_pred hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------------------CcEEEeccCCCCCCC-
Q 022305 135 TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------------------TEYVVQDLNLNPKLP- 193 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------------------~~~~~~D~~~~~~lp- 193 (299)
.....+|||+|||+|.........+.+|+|+|+|+.|++.|+++ .++..+|. ..++
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~ 94 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF---FALTA 94 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC---SSSTH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc---ccccc
Confidence 34567999999999974444444689999999999999987652 46788888 6665
Q ss_pred CCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 194 FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 194 f~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
....+||+|++..+++|++ +...+++++.++|||||.+++...
T Consensus 95 ~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 4557899999999999997 467899999999999998877543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.4e-16 Score=136.19 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=86.3
Q ss_pred ceeeccCcCCccc------cCCCCC--CCeEEEEeCCHHHHHhcCCC------Cc---E--EEeccC---CCCCCCCCCC
Q 022305 140 EVFPPSNTPGVSH------FPPGYK--QDRIVGMGMNEEELKRNPVL------TE---Y--VVQDLN---LNPKLPFEDN 197 (299)
Q Consensus 140 ~vLDiGcG~G~~~------~~~~~~--~~~v~gvD~S~~ml~~a~~~------~~---~--~~~D~~---~~~~lpf~~~ 197 (299)
+|||+|||+|... +...++ ...++|||+|+.|++.++++ .. + ...++. .....+++++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 6999999999621 111222 34789999999999877542 22 2 222220 0012356789
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCc-chHHHHHH-hhhhcCCCchhhh-----HHHHHHHhCCC
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR-CFWTKAIS-IWTSTGDADHVMI-----VGAYFHYAGGY 270 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~aGF 270 (299)
+||+|+|.+++||++|+.++|++++++|||||.+++...+. ..+...+. .|.......+..+ +.+.+ .+.||
T Consensus 123 ~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~G~ 201 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQML-DNLGL 201 (280)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHH-HHHTC
T ss_pred ceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHH-HHCCC
Confidence 99999999999999999999999999999999988877653 34444332 3333333333222 22333 55788
Q ss_pred CC
Q 022305 271 EP 272 (299)
Q Consensus 271 ~~ 272 (299)
..
T Consensus 202 ~~ 203 (280)
T d1jqea_ 202 KY 203 (280)
T ss_dssp CE
T ss_pred ce
Confidence 64
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.3e-15 Score=131.57 Aligned_cols=102 Identities=15% Similarity=-0.014 Sum_probs=76.1
Q ss_pred HHHhhhcCCceeeccCcCCccccCC-CCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~-~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
.+.+.....+|||+|||+|...... .....+++|||+|+.|++.|+++ +.++..|... ...++++++||.|
T Consensus 47 a~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i 125 (229)
T d1zx0a1 47 AAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED-VAPTLPDGHFDGI 125 (229)
T ss_dssp HHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-HGGGSCTTCEEEE
T ss_pred HHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccc-cccccccccccce
Confidence 3444455679999999999633322 22346899999999999987653 4455555410 1235778899988
Q ss_pred E-----ecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 203 T-----NVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 203 i-----s~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
+ +...++|+.++..++++++|+|||||.|++
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred eecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 7 678888999999999999999999998876
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=2.1e-15 Score=133.04 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=104.2
Q ss_pred hhcCCceeeccCcCCccccCC--C-CCCCeEEEEeCCHHHHHhcCC-----------CCcEEEeccCCCCCCCCCCCCee
Q 022305 135 TKYYSEVFPPSNTPGVSHFPP--G-YKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~~~--~-~~~~~v~gvD~S~~ml~~a~~-----------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
.+...+|||+|||+|...+.. . .+.++|+++|+++++++.|++ +++++++|+ .+.++++++||
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~---~~~~~~~~~fD 170 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVD 170 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GGCCCCTTCEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc---ccccccCCCcc
Confidence 346689999999999733322 2 367899999999999998765 367788898 77788999999
Q ss_pred EEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCC
Q 022305 201 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 280 (299)
Q Consensus 201 ~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~ 280 (299)
.|+. ++++|..++.++.|+|||||.+++-.|+.....+. -.-++...||..+++.++-.
T Consensus 171 aV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~----------------~~~l~~~~~f~~i~~~E~l~ 229 (264)
T d1i9ga_ 171 RAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRI----------------VEALRAKQCWTEPRAWETLQ 229 (264)
T ss_dssp EEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHH----------------HHHHHHHSSBCCCEEECCCC
T ss_pred eEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHH----------------HHHHHHcCCeecceEEEEEE
Confidence 9975 68999999999999999999998877764432222 12233447798888877754
Q ss_pred CCC-------------CCCCeEEEEEEecC
Q 022305 281 NPG-------------RSDPMYVVYSRKAS 297 (299)
Q Consensus 281 ~~~-------------~~~p~~~v~arK~~ 297 (299)
.++ ....-|+++|||.+
T Consensus 230 R~~~v~~~~~RP~~~~vgHTgfl~~ark~~ 259 (264)
T d1i9ga_ 230 RGWNVVGLAVRPQHSMRGHTAFLVATRRLA 259 (264)
T ss_dssp CCEEEETTEEEECSCCCCCSCEEEEEEBCC
T ss_pred EEEEeccCeeCCCCCCccchHHHhhhhhcc
Confidence 321 22345999999964
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.53 E-value=2.2e-15 Score=132.00 Aligned_cols=137 Identities=15% Similarity=0.243 Sum_probs=97.8
Q ss_pred hcCCceeeccCcCCccc--cCCC-CCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGVSH--FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~--~~~~-~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
+...+|||+|||+|... ++.. .+.++|+++|+++++++.|+++ +++..+|+ .+. +++++||+|+
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di---~~~-~~~~~fD~V~ 159 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADF-ISDQMYDAVI 159 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTC-CCSCCEEEEE
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee---ecc-cccceeeeee
Confidence 45579999999999633 2222 3568999999999999987652 67788888 443 4578899998
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCC-
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP- 282 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~- 282 (299)
+ +++++..+++++.++|||||.+++..|+.....+. .+.+ +..||..+++.++....
T Consensus 160 l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~----------------~~~l-~~~gf~~i~~~E~~~R~~ 217 (250)
T d1yb2a1 160 A-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT----------------VLSL-SASGMHHLETVELMKRRI 217 (250)
T ss_dssp E-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHH----------------HHHS-GGGTEEEEEEEEEEECCC
T ss_pred e-----cCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHH----------------HHHH-HHCCCceeEEEEEEeEEE
Confidence 5 57899999999999999999999877753221111 1112 44789888777663322
Q ss_pred ----CCCCC--------eEEEEEEecCC
Q 022305 283 ----GRSDP--------MYVVYSRKAST 298 (299)
Q Consensus 283 ----~~~~p--------~~~v~arK~~~ 298 (299)
....| -|+++|||+++
T Consensus 218 ~~~~~~~RP~~~mvgHTgfl~~arK~~g 245 (250)
T d1yb2a1 218 LVREGATRPASDDLTHTAFITFAIKKSG 245 (250)
T ss_dssp CCCTTCCCCGGGGSCEEEEEEEEEECCS
T ss_pred EEcCCccCCCCCCccchhhhhhhcccCC
Confidence 12222 29999999875
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.3e-15 Score=129.80 Aligned_cols=97 Identities=13% Similarity=0.008 Sum_probs=79.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC-------------------------CCcEEEeccCCCCC
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV-------------------------LTEYVVQDLNLNPK 191 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~-------------------------~~~~~~~D~~~~~~ 191 (299)
...+|||+|||.|.........+.+|+|||+|+.|++.+++ .+++.++|+ ..
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~---~~ 121 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI---FD 121 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG---GG
T ss_pred CCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch---hh
Confidence 44689999999998555555568899999999999986532 267888888 55
Q ss_pred C-CCCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEec
Q 022305 192 L-PFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 192 l-pf~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+ +...+.||+|+...+++|++ +...+++++.++|||||.+++.+.
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 5 46678999999999999994 668899999999999998777654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=4.2e-15 Score=132.36 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=72.7
Q ss_pred hcCCceeeccCcCCccc-cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSH-FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~-~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||.|... ......+++|+|+|+|+++++.|+++ +.+...|. ..+ +++||.|+|.
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~---~~~---~~~fD~i~si 124 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDF---AEPVDRIVSI 124 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGC---CCCCSEEEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh---hhh---ccchhhhhHh
Confidence 34579999999988532 23333478999999999999876542 34444454 332 5789999999
Q ss_pred ccccccC--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.+++|+. +...+|++++|+|||||.+++..
T Consensus 125 ~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 125 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 9999996 45899999999999999998864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.52 E-value=7.3e-15 Score=125.40 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=93.6
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEE-ecc
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVIT-NVV 206 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vi-s~~ 206 (299)
+...+|||+|||+|. .+++...+.++|+|+|+|+.|++.+++ ++.++..|. ...+.....+|.|. +.+
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGGTTTTCCCEEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCccccccccceEEEEEe
Confidence 345799999999996 444444466799999999999986644 477888888 55554444444432 234
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHH-HhCCCCCCeeeecCCCCCCC
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH-YAGGYEPPQAVDISPNPGRS 285 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~aGF~~v~~~~~~~~~~~~ 285 (299)
.+.|..+...++++++|+|||||.+++.+..++ ..........+..... ..+||+.++..++.|= .
T Consensus 132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~P~--~- 198 (209)
T d1nt2a_ 132 DIAQKNQIEILKANAEFFLKEKGEVVIMVKARS----------IDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPY--H- 198 (209)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHH----------HCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTT--C-
T ss_pred cccChhhHHHHHHHHHHHhccCCeEEEEEEccc----------cCCCCCHHHHHHHHHHHHHcCCEEEEEEccCCC--c-
Confidence 577778899999999999999999988653211 0011111112222111 3489999998887642 2
Q ss_pred CCeEEEEEE
Q 022305 286 DPMYVVYSR 294 (299)
Q Consensus 286 ~p~~~v~ar 294 (299)
.-.++|.+.
T Consensus 199 ~~H~~v~~~ 207 (209)
T d1nt2a_ 199 RDHIFIHAY 207 (209)
T ss_dssp TTEEEEEEE
T ss_pred cCcEEEEEE
Confidence 244556554
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=5e-15 Score=132.55 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=73.5
Q ss_pred hcCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||.|.... .....+++|+|+++|+++++.++++ +.+...| .++.+++||.|+|.
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d------~~~~~~~fD~i~si 133 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG------WEEFDEPVDRIVSL 133 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC------GGGCCCCCSEEEEE
T ss_pred CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc------ccccccccceEeec
Confidence 355789999999886332 2233478999999999998876542 3344444 45668899999999
Q ss_pred ccccccCC---------HHHHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVDYLTK---------PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~~~~d---------~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.+++|+.+ ...+|+++.|+|||||.+++.+
T Consensus 134 e~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 134 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp SCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 99999976 5799999999999999998864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=1.2e-15 Score=136.14 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=73.1
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC------------CcEEEeccCCC-CCCCCCCCCeeEEEe
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLN-PKLPFEDNSFDVITN 204 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~------------~~~~~~D~~~~-~~lpf~~~~FD~Vis 204 (299)
..+|||+|||+|.........+.+|+|+|+|++||+.|+++ ..+..+|.... ..+| ..++||+|+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~ 135 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVIC 135 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEE
Confidence 45899999999975544444578999999999999987652 22333333000 0122 3467999997
Q ss_pred c-ccccccCC-------HHHHHHHHHhhccCCcEEEEEecCc
Q 022305 205 V-VSVDYLTK-------PIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 205 ~-~~l~~~~d-------~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
. .+++|+++ ...+|++++|+|||||.|+|++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 6 58999864 5679999999999999999988764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.46 E-value=1.4e-14 Score=121.02 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=80.9
Q ss_pred HHHHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCe
Q 022305 130 AIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 130 ~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
++..+ .+.-.+|||+|||+|...+.......+|+|+|+|++|++.|++ +++++++|+ .+.+++.+.|
T Consensus 25 il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda---~~~~~~~~~~ 101 (186)
T d1l3ia_ 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA---PEALCKIPDI 101 (186)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH---HHHHTTSCCE
T ss_pred HHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch---hhcccccCCc
Confidence 34444 3456789999999997544444456799999999999998765 367899998 7777778899
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+|++....+ +...+++++.+.|||||.+++....
T Consensus 102 D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 102 DIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp EEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeec
Confidence 9999987654 4578899999999999999887553
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=2.3e-14 Score=120.44 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=81.1
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCCCCCCCC
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNS 198 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~lpf~~~~ 198 (299)
+++.+. ....+|||+|||+|...+.......+|+++|+|+.|++.+++ .+++..+|. .+ ++++++
T Consensus 44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~---~~-~~~~~~ 119 (194)
T d1dusa_ 44 LVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE-NVKDRK 119 (194)
T ss_dssp HHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT-TCTTSC
T ss_pred HHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcch---hh-hhccCC
Confidence 444442 346789999999997554444456799999999999997764 256778887 44 567889
Q ss_pred eeEEEecccccccCC-HHHHHHHHHhhccCCcEEEEEecC
Q 022305 199 FDVITNVVSVDYLTK-PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 199 FD~Vis~~~l~~~~d-~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
||+|+|+..+++..+ ..++++++.++|||||.+++....
T Consensus 120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 999999988887765 477899999999999998886554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=1.6e-14 Score=128.84 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=75.0
Q ss_pred hcCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
+...+|||+|||.|...+ .....+++|+||++|+++++.+++ ++++..+|. ..+ +++||.|+|.
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---~~~---~~~fD~i~si 134 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQF---DEPVDRIVSI 134 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGC---CCCCSEEEEE
T ss_pred CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh---hcc---cccccceeee
Confidence 355789999999886322 333357999999999999987654 256777777 444 3689999999
Q ss_pred ccccccC--CHHHHHHHHHhhccCCcEEEEEe
Q 022305 206 VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 206 ~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
.+++|+. +...+++++.|+|||||.+++.+
T Consensus 135 ~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 135 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 9999994 56899999999999999888753
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.44 E-value=8.5e-14 Score=120.07 Aligned_cols=145 Identities=16% Similarity=0.147 Sum_probs=97.7
Q ss_pred cCCceeeccCcCCc--cccCCCC-CCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGY-KQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~-~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+|||+|+ .+++... +.++|+|+|+|+.|++.+++ ++..+..|.......+.....+|+|++.
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d-- 150 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED-- 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC--
T ss_pred CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE--
Confidence 45799999999997 3444332 56899999999999986543 3566777774333444556789988874
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHH-HHhCCCCCCeeeecCCCCCCCC
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF-HYAGGYEPPQAVDISPNPGRSD 286 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~aGF~~v~~~~~~~~~~~~~ 286 (299)
+.|.++...+++++.+.|||||.+++.+...+. ....... ..+...- ....||+.++..++.|- ..
T Consensus 151 ~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~--------~~~~~~~--~v~~~v~~l~~~gf~iie~i~L~p~---~~ 217 (227)
T d1g8aa_ 151 VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSI--------DVTKEPE--QVFREVERELSEYFEVIERLNLEPY---EK 217 (227)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT--------CTTSCHH--HHHHHHHHHHHTTSEEEEEEECTTT---SS
T ss_pred ccccchHHHHHHHHHHhcccCCeEEEEEECCcc--------CCCCCHH--HHHHHHHHHHHcCCEEEEEEcCCCC---CC
Confidence 567778899999999999999998887532210 0001111 1111111 13479999998887652 23
Q ss_pred CeEEEEEEec
Q 022305 287 PMYVVYSRKA 296 (299)
Q Consensus 287 p~~~v~arK~ 296 (299)
-.++|++||.
T Consensus 218 ~H~~vv~rK~ 227 (227)
T d1g8aa_ 218 DHALFVVRKT 227 (227)
T ss_dssp SEEEEEEECC
T ss_pred ceEEEEEEeC
Confidence 4799999984
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=6.6e-14 Score=123.60 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=96.6
Q ss_pred hcCCceeeccCcCCc--cccCCC-CCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~-~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
+...+|||+|||+|. ..++.. .+.++|+++|+++++++.|+++ +.+...|+ ...+....||.|+
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~----~~~~~~~~~D~V~ 177 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI----SEGFDEKDVDALF 177 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG----GGCCSCCSEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc----cccccccceeeeE
Confidence 466899999999996 233322 3578999999999999988763 44555555 2346677899885
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCCchhhhHHHHHHHhCCCCCCeeeecCCCCC
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG 283 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGF~~v~~~~~~~~~~ 283 (299)
+++++|.++++++.++|||||.+++-.|+.....+ .-+.+ +..||..+++.++....+
T Consensus 178 -----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~----------------~~~~l-~~~gF~~i~~~E~l~R~~ 235 (266)
T d1o54a_ 178 -----LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQE----------------TLKKL-QELPFIRIEVWESLFRPY 235 (266)
T ss_dssp -----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHH----------------HHHHH-HHSSEEEEEEECCCCCCE
T ss_pred -----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHH----------------HHHHH-HHCCceeEEEEEEEEEEE
Confidence 47899999999999999999999987765321111 11222 447898888887644321
Q ss_pred -------------CCCCeEEEEEEecCC
Q 022305 284 -------------RSDPMYVVYSRKAST 298 (299)
Q Consensus 284 -------------~~~p~~~v~arK~~~ 298 (299)
....-|+++|||...
T Consensus 236 ~~~~~~vRP~~~~vgHTgfl~~ark~~~ 263 (266)
T d1o54a_ 236 KPVPERLRPVDRMVAHTAYMIFATKVCR 263 (266)
T ss_dssp ECCTTSCEECSCCCCCSCEEEEEEECSC
T ss_pred EecCCccCCCCCCcchHHHHHHheeccc
Confidence 122339999999753
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=2.3e-14 Score=125.71 Aligned_cols=97 Identities=14% Similarity=0.230 Sum_probs=75.9
Q ss_pred HHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 131 IAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 131 ~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
++...+...+|||+|||+|...+.....+.+|+|+|+|+.|++.|+++ .++.++|+ .. .+++++||+|+
T Consensus 114 l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~---~~-~~~~~~fD~V~ 189 (254)
T d2nxca1 114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EA-ALPFGPFDLLV 189 (254)
T ss_dssp HHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HH-HGGGCCEEEEE
T ss_pred HHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccc---cc-cccccccchhh
Confidence 333345567999999999985555555678999999999999987753 66788887 33 35678999999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
++...+. +.+.++++.++|||||.++++
T Consensus 190 ani~~~~---l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 190 ANLYAEL---HAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EECCHHH---HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccc---HHHHHHHHHHhcCCCcEEEEE
Confidence 9865443 567889999999999999986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.41 E-value=7.2e-14 Score=122.57 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=91.5
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
...+|||+|||+|. ..+...+|+.+++++|+ +++++.+++ +++++.+|. .. +.+ +.||+|++.
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~---~~-~~p-~~~D~v~~~ 154 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF---FK-PLP-VTADVVLLS 154 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCS-CCEEEEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec---cc-ccc-ccchhhhcc
Confidence 45789999999996 44556678899999998 677775543 367778887 32 333 459999999
Q ss_pred ccccccCCH--HHHHHHHHhhccCCcEEEEEecC---cch----HHHHHH--hhhhcCCCch-hhhHHHHHHHhCCCCCC
Q 022305 206 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN---RCF----WTKAIS--IWTSTGDADH-VMIVGAYFHYAGGYEPP 273 (299)
Q Consensus 206 ~~l~~~~d~--~~~l~ei~rvLkpGG~lii~~~~---~~~----~~~~~~--~~~~~~~~~~-~~~~~~~~~~~aGF~~v 273 (299)
++|||++|. .++|++++++|||||.++|.... ... ....+. .+...+...+ ..-+.+.+ +++||+.+
T Consensus 155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll-~~AGf~~~ 233 (256)
T d1qzza2 155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA-GSAGLALA 233 (256)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH-HTTTEEEE
T ss_pred ccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHH-HHCCCcee
Confidence 999999865 57799999999999977765321 111 111111 1122222221 22333444 67999998
Q ss_pred eeeecCCC
Q 022305 274 QAVDISPN 281 (299)
Q Consensus 274 ~~~~~~~~ 281 (299)
++....+.
T Consensus 234 ~~~~~~~~ 241 (256)
T d1qzza2 234 SERTSGST 241 (256)
T ss_dssp EEEEECCS
T ss_pred EEEEeCCc
Confidence 88776543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=7e-14 Score=118.73 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=82.1
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vis~~ 206 (299)
..|||+|||+|. ..++...++..++|+|+++.++..+.+ ++.++.+|+ ..+. ++++++|.|++.+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da---~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGHHHHCCTTSCCEEEEES
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch---hhhhcccCchhhhcccccc
Confidence 468999999996 555667788999999999999986543 478899998 6664 8899999999998
Q ss_pred cccccCCH--------HHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 207 SVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 207 ~l~~~~d~--------~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
...|.... ..+|+++.|+|||||.|+|.+.+.....
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~ 151 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFE 151 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHH
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHH
Confidence 88887543 5899999999999999988765544333
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.30 E-value=1.2e-12 Score=110.89 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=80.5
Q ss_pred CceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCC--CCCCCeeEEEecc
Q 022305 139 SEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITNVV 206 (299)
Q Consensus 139 ~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lp--f~~~~FD~Vis~~ 206 (299)
..+||||||.|. ..++...|...++|+|+++.++..+.+ ++.++.+|+ ..+. ++++++|.|++.+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHHhhhccCCceehhcccc
Confidence 469999999996 555666788999999999999986543 488899998 5664 7889999999887
Q ss_pred cccccCCH--------HHHHHHHHhhccCCcEEEEEecCcchHH
Q 022305 207 SVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCFWT 242 (299)
Q Consensus 207 ~l~~~~d~--------~~~l~ei~rvLkpGG~lii~~~~~~~~~ 242 (299)
.-.|.... ..+|+++.|+|||||.++|.+.+.....
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~ 153 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFE 153 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHH
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHH
Confidence 66655432 6899999999999999998776544433
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.7e-13 Score=123.13 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=77.9
Q ss_pred HHHHh-hhcCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCC-----------------CCcEEEeccCCC
Q 022305 130 AIAAL-TKYYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLN 189 (299)
Q Consensus 130 ~~~~l-~~~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~-----------------~~~~~~~D~~~~ 189 (299)
+++.+ .+.-..|||+|||.|...+ +...+..+++|||+|+.|++.|++ +++++++|+
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~--- 219 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF--- 219 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT---
T ss_pred HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc---
Confidence 34444 2345789999999996433 333455689999999999987643 378999999
Q ss_pred CCCCCCCCCeeE-EEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 190 PKLPFEDNSFDV-ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 190 ~~lpf~~~~FD~-Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.++++.++.||+ |+..+.+.|.+++...|.|+.|+|||||.+|+.
T Consensus 220 ~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 888888777754 444455678889999999999999999998874
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=4.5e-13 Score=114.34 Aligned_cols=99 Identities=18% Similarity=0.085 Sum_probs=76.3
Q ss_pred HHHHHh-hhcCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCC
Q 022305 129 PAIAAL-TKYYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFED 196 (299)
Q Consensus 129 ~~~~~l-~~~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~ 196 (299)
.+++.+ .+.-.+|||+|||+|.... +.. .+...|+++|+++++++.|+++ +.++++|. ....+.+
T Consensus 66 ~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~---~~~~~~~ 142 (213)
T d1dl5a1 66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YYGVPEF 142 (213)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGG
T ss_pred HHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCch---HHccccc
Confidence 345555 3456799999999996332 222 2467999999999999987763 56788888 6666778
Q ss_pred CCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 197 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 197 ~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++||+|++..+++++++ ++.+.|||||.+++.+.
T Consensus 143 ~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp CCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEBC
T ss_pred cchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEEC
Confidence 89999999999999863 57789999999988653
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.8e-12 Score=111.45 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=78.2
Q ss_pred ccHHHHHHhh---hcCCceeeccCcCCccc--cCC-CCCCCeEEEEeCCHHHHHhcCCC-------------CcEEEecc
Q 022305 126 IDDPAIAALT---KYYSEVFPPSNTPGVSH--FPP-GYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDL 186 (299)
Q Consensus 126 l~~~~~~~l~---~~~~~vLDiGcG~G~~~--~~~-~~~~~~v~gvD~S~~ml~~a~~~-------------~~~~~~D~ 186 (299)
+...+++.|. +...+|||+|||+|... ++. ..+..+|+++|+++++++.|+++ +.++.+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 3344566663 34569999999999532 222 22467999999999999877542 56788898
Q ss_pred CCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 187 NLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 187 ~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
...++++++||+|++..++++++ .++.+.|||||.+++-+.+
T Consensus 142 ---~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 142 ---RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp ---GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred ---ccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEEcc
Confidence 66777788999999999999886 3578999999999986654
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=1.3e-11 Score=103.46 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=68.6
Q ss_pred CCceeeccCcCCccc------c----CCCCCCCeEEEEeCCHHHHHhcCCC-----------------------------
Q 022305 138 YSEVFPPSNTPGVSH------F----PPGYKQDRIVGMGMNEEELKRNPVL----------------------------- 178 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~------~----~~~~~~~~v~gvD~S~~ml~~a~~~----------------------------- 178 (299)
..+|+++|||+|.-. + .......+++|+|+|+.+|++|++.
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 348999999999611 1 1111235899999999999977531
Q ss_pred ----------CcEEEeccCCCCCCCCCCCCeeEEEecccccccCCH--HHHHHHHHhhccCCcEEEEE
Q 022305 179 ----------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 179 ----------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~--~~~l~ei~rvLkpGG~lii~ 234 (299)
+.+...+.. ...+...+.||+|+|.++|.|+++. .++++++++.|||||++++.
T Consensus 105 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLL--EKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEECHHHHTTEEEEECCTT--CSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eehHHHHHHHHHHhhhhcc--ccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 122233331 2223345789999999999999865 68999999999999999986
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=9.4e-12 Score=112.52 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=80.6
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
-.+|||+|||+|...+.....+ .+|+|+|.|+ |++.+++ +++++.+|+ +++++++++||+|++...
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l~~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSSSCEEEEEECCC
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhccCcccceeEEEEEec
Confidence 4689999999997433333334 5899999997 4443332 378899999 899999999999999766
Q ss_pred cccc---CCHHHHHHHHHhhccCCcEEEEE--------ecCcchHHHHHHhhhhcCCC
Q 022305 208 VDYL---TKPIEVFKEMCQVLKPGGLAIVS--------FSNRCFWTKAISIWTSTGDA 254 (299)
Q Consensus 208 l~~~---~d~~~~l~ei~rvLkpGG~lii~--------~~~~~~~~~~~~~~~~~~~~ 254 (299)
.+++ ..+..++.++.|+|||||.++-+ +.....+.+....|....+.
T Consensus 115 ~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~~~~~~~~~~~G~ 172 (328)
T d1g6q1_ 115 GYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGF 172 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHHHHTTCBTTB
T ss_pred ceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHHHhcccccccccc
Confidence 5544 56888999999999999987521 22234445555566554433
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.4e-11 Score=105.50 Aligned_cols=125 Identities=13% Similarity=0.190 Sum_probs=86.6
Q ss_pred HHHHhhhcCCceeeccCcCCcc--ccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCe
Q 022305 130 AIAALTKYYSEVFPPSNTPGVS--HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 130 ~~~~l~~~~~~vLDiGcG~G~~--~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~F 199 (299)
.+..+.+...+|||+|||+|.. .+....+..+|+++|+|+.+++.|+++ ++++++|. .. ++++++|
T Consensus 101 ~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~---~~-~~~~~~f 176 (274)
T d2b3ta1 101 ALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FS-ALAGQQF 176 (274)
T ss_dssp HHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TG-GGTTCCE
T ss_pred HhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccc---cc-ccCCCce
Confidence 3444444556799999999973 334456789999999999999987653 67888887 22 4567799
Q ss_pred eEEEecc-------------cccccC------------CHHHHHHHHHhhccCCcEEEEEecCcchHHHHHHhhhhcCCC
Q 022305 200 DVITNVV-------------SVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA 254 (299)
Q Consensus 200 D~Vis~~-------------~l~~~~------------d~~~~l~ei~rvLkpGG~lii~~~~~~~~~~~~~~~~~~~~~ 254 (299)
|+|+|+= ++.|-+ ...+++++..+.|+|||.+++++..
T Consensus 177 DlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~----------------- 239 (274)
T d2b3ta1 177 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW----------------- 239 (274)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-----------------
T ss_pred eEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-----------------
Confidence 9999971 112211 1246889999999999999998542
Q ss_pred chhhhHHHHHHHhCCCCCCeee
Q 022305 255 DHVMIVGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 255 ~~~~~~~~~~~~~aGF~~v~~~ 276 (299)
.+...+.+++. ..||..+++.
T Consensus 240 ~q~~~v~~~l~-~~gf~~i~~~ 260 (274)
T d2b3ta1 240 QQGEAVRQAFI-LAGYHDVETC 260 (274)
T ss_dssp SCHHHHHHHHH-HTTCTTCCEE
T ss_pred hHHHHHHHHHH-HCCCCeEEEE
Confidence 11223344443 4789877654
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.5e-11 Score=111.10 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=71.7
Q ss_pred hhcCCceeeccCcCCcccc--CCC-CCCCeEEEEeCCHHHHHhcCC-------------------CCcEEEeccCCCCCC
Q 022305 135 TKYYSEVFPPSNTPGVSHF--PPG-YKQDRIVGMGMNEEELKRNPV-------------------LTEYVVQDLNLNPKL 192 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~~--~~~-~~~~~v~gvD~S~~ml~~a~~-------------------~~~~~~~D~~~~~~l 192 (299)
.+...+|||+|||+|...+ +.. .+.++|+++|+++++++.|++ ++++...|+ ...
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di---~~~ 172 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI---SGA 172 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT---TCC
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch---hhc
Confidence 3456899999999996333 222 257899999999999998764 266888888 444
Q ss_pred --CCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecCcc
Q 022305 193 --PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 193 --pf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~~~ 239 (299)
.+++..||.|+. .+++|..++.++.++|||||.+++-.|+-.
T Consensus 173 ~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~ 216 (324)
T d2b25a1 173 TEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNIT 216 (324)
T ss_dssp C-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred ccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 346778999975 568889999999999999999988766543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.09 E-value=1.3e-10 Score=100.89 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=98.4
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||.|. ..+...+|+.+++..|+ |+.++.+.. +++++.+|+. +. .+ ..|++++.++||+.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~--~~--~p--~~D~~~l~~vLh~~~ 153 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMF--AS--VP--QGDAMILKAVCHNWS 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTT--TC--CC--CEEEEEEESSGGGSC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCcc--cc--cc--cceEEEEehhhhhCC
Confidence 45689999999997 55566778899999998 566776654 4889999983 22 32 359999999999998
Q ss_pred CH--HHHHHHHHhhccCCcEEEEEe---cCc--chHHH----HH--HhhhhcCCCch-hhhHHHHHHHhCCCCCCeeeec
Q 022305 213 KP--IEVFKEMCQVLKPGGLAIVSF---SNR--CFWTK----AI--SIWTSTGDADH-VMIVGAYFHYAGGYEPPQAVDI 278 (299)
Q Consensus 213 d~--~~~l~ei~rvLkpGG~lii~~---~~~--~~~~~----~~--~~~~~~~~~~~-~~~~~~~~~~~aGF~~v~~~~~ 278 (299)
|. .++|+++++.|+|||.++|.. +.. ..... .+ ......++.++ ..-+.+.+ +++||+.+++...
T Consensus 154 de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll-~~AGF~~v~v~~~ 232 (244)
T d1fp1d2 154 DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLS-KLSGFSKFQVACR 232 (244)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH-HHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHH-HHcCCCceEEEec
Confidence 64 578999999999999776642 221 11111 11 11112233322 23334444 5699999998653
Q ss_pred CCCCCCCCCeEEEEEEe
Q 022305 279 SPNPGRSDPMYVVYSRK 295 (299)
Q Consensus 279 ~~~~~~~~p~~~v~arK 295 (299)
. ..++-++-+||
T Consensus 233 ~-----~~~~~viE~~K 244 (244)
T d1fp1d2 233 A-----FNSLGVMEFYK 244 (244)
T ss_dssp E-----TTTEEEEEEEC
T ss_pred C-----CCCEEEEEEeC
Confidence 3 24667888887
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=2.6e-11 Score=109.09 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
-+.|||+|||+|...+.....+ .+|+|+|.|+.+....+ .+++++.+|+ ++++++.++||+|++....
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~---~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV---EEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT---TTCCCSSSCEEEEEECCCB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH---HHcccccceeEEEeeeeee
Confidence 3679999999997443333334 57999999986543211 1378999999 8899999999999998776
Q ss_pred ccc---CCHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYL---TKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~---~d~~~~l~ei~rvLkpGG~lii 233 (299)
+++ ...+.++.++.|+|||||.++-
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 665 3678999999999999998863
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.05 E-value=1.7e-11 Score=105.07 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=73.5
Q ss_pred HHHHh-hhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEE
Q 022305 130 AIAAL-TKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 130 ~~~~l-~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
+++.+ .+.-.+|||+|||+|...........+|+++|+++++++.|++ +++++.+|. ..-..++++||.|
T Consensus 62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~---~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRV 138 (224)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEE
T ss_pred HHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCch---hhcchhhhhHHHH
Confidence 45555 3456789999999996333333345799999999999997765 377888887 4433456789999
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
++..++++++ ..+.+.|||||.+++-+.
T Consensus 139 iv~~a~~~ip------~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 139 VVWATAPTLL------CKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp EESSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred Hhhcchhhhh------HHHHHhcCCCCEEEEEEc
Confidence 9999998886 346788999999888543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.4e-11 Score=107.87 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=71.7
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
.+.|||+|||+|...+..+..+ .+|+|+|.|+.|+...+ .+++++.+|+ +++++++++||+|++....
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---EEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSCSCEEEEEECCCB
T ss_pred cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---HHhcCccccceEEEEeeee
Confidence 3579999999997444333334 58999999998864221 1378899999 8899999999999998766
Q ss_pred cccC---CHHHHHHHHHhhccCCcEEEE
Q 022305 209 DYLT---KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 209 ~~~~---d~~~~l~ei~rvLkpGG~lii 233 (299)
+++. .+..++....+.|||||.++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 6653 356778888999999998863
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=7.6e-11 Score=109.23 Aligned_cols=103 Identities=11% Similarity=-0.037 Sum_probs=69.6
Q ss_pred HHHHHHh-hhcCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcCCCC-----------------cE-EEecc
Q 022305 128 DPAIAAL-TKYYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNPVLT-----------------EY-VVQDL 186 (299)
Q Consensus 128 ~~~~~~l-~~~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~~~~-----------------~~-~~~D~ 186 (299)
..+++.+ .+.-+.+||+|||.|...+ +...+..+++|||+|+.|++.|+++. .+ ..++.
T Consensus 206 ~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f 285 (406)
T d1u2za_ 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 285 (406)
T ss_dssp HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech
Confidence 3345554 3455789999999996443 33334568999999999999886531 11 12222
Q ss_pred CCCCCCCCC---CCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 187 NLNPKLPFE---DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 187 ~~~~~lpf~---~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
...++. -..+|+|++++ +.|.+++...|.|+.|+|||||.+|+.
T Consensus 286 ---~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 286 ---VDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp ---TTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ---hhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 111111 13467787654 567889999999999999999998774
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=1.3e-08 Score=87.89 Aligned_cols=135 Identities=7% Similarity=0.087 Sum_probs=90.5
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||+|. ..+...+|+.+++..|+ ++.++.+.. +++++.+|+ .+ +.+ .+|++++.++||+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~---f~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDM---FT-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCT---TT-CCC--CCSEEEEESCGGGSC
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCc---cc-CCC--CCcEEEEEeecccCC
Confidence 35689999999997 55667778899999998 566776654 589999998 33 222 479999999999998
Q ss_pred CH--HHHHHHHHhhccCC---cEEEEE-e--cCc--chHHH----HHHh-hhhcCCCch-hhhHHHHHHHhCCCCCCeee
Q 022305 213 KP--IEVFKEMCQVLKPG---GLAIVS-F--SNR--CFWTK----AISI-WTSTGDADH-VMIVGAYFHYAGGYEPPQAV 276 (299)
Q Consensus 213 d~--~~~l~ei~rvLkpG---G~lii~-~--~~~--~~~~~----~~~~-~~~~~~~~~-~~~~~~~~~~~aGF~~v~~~ 276 (299)
|. .++|+++++.|+|| |.++|. . +.. ..... .+.. ....++.++ ..-+.+.+ +++||+.+++.
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll-~~AGf~~~~i~ 231 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLF-IEAGFQHYKIS 231 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHH-HHTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHH-HHcCCceEEEE
Confidence 76 47899999999998 655543 2 221 11111 1111 111233222 33344444 56999999886
Q ss_pred ecC
Q 022305 277 DIS 279 (299)
Q Consensus 277 ~~~ 279 (299)
.+.
T Consensus 232 ~~~ 234 (244)
T d1fp2a2 232 PLT 234 (244)
T ss_dssp EEE
T ss_pred ECC
Confidence 544
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=1.3e-09 Score=93.01 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=74.5
Q ss_pred HHHHHHh---hhcCCceeeccCcCCccc-----cC---CCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEE
Q 022305 128 DPAIAAL---TKYYSEVFPPSNTPGVSH-----FP---PGYKQDRIVGMGMNEEELKRNPV-------------LTEYVV 183 (299)
Q Consensus 128 ~~~~~~l---~~~~~~vLDiGcG~G~~~-----~~---~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~ 183 (299)
..+++.| .+...+|||+|||+|... +. -.....+|+++|+++++++.+++ ++.++.
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 4456665 234579999999999521 11 01234689999999999998754 367888
Q ss_pred eccCCCCCCCCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 184 QDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 184 ~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
+|. .....+.+.||.|++..+++++++ .+.+.|||||.+++-+.
T Consensus 148 ~d~---~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 148 GDG---RKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp SCG---GGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ccc---ccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence 998 555556788999999999988863 46789999999988654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.80 E-value=4.6e-10 Score=95.43 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=74.5
Q ss_pred HHHHHHh-hhcCCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCC
Q 022305 128 DPAIAAL-TKYYSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDN 197 (299)
Q Consensus 128 ~~~~~~l-~~~~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~ 197 (299)
..+++.+ .+...+|||+|||+|..... ....+.+|+++|.++++++.+++ ++.++.+|. .....+.+
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~---~~g~~~~~ 144 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG---SKGFPPKA 144 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGC
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc---ccCCcccC
Confidence 3445555 34567999999999962222 22235679999999999987765 378999998 44445678
Q ss_pred CeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 198 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 198 ~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
.||.|++..++.++++. +...|||||.+++-+.
T Consensus 145 pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPVG 177 (215)
T ss_dssp CEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEEC
T ss_pred cceeEEeecccccCCHH------HHHhcCCCCEEEEEEc
Confidence 89999999999887643 5668999999987654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=1.7e-08 Score=87.02 Aligned_cols=135 Identities=12% Similarity=0.116 Sum_probs=88.3
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC--CCcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~--~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
...+|||+|||.|. ..+...+|+.++++.|+.+ .++.++. +++++.+|+. +.+| . .|+++..+++|..+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~r~~~~~~d~~--~~~P--~--ad~~~l~~vlh~~~ 153 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYPGVEHVGGDMF--VSIP--K--ADAVFMKWICHDWS 153 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCTTEEEEECCTT--TCCC--C--CSCEECSSSSTTSC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCCceEEeccccc--ccCC--C--cceEEEEEEeecCC
Confidence 35689999999996 5566777899999999865 4555444 4888999983 3333 2 47778888999886
Q ss_pred C--HHHHHHHHHhhccCCcEEEEEe---cC--cchHHH----HHHh--hhh-cCCCch-hhhHHHHHHHhCCCCCCeeee
Q 022305 213 K--PIEVFKEMCQVLKPGGLAIVSF---SN--RCFWTK----AISI--WTS-TGDADH-VMIVGAYFHYAGGYEPPQAVD 277 (299)
Q Consensus 213 d--~~~~l~ei~rvLkpGG~lii~~---~~--~~~~~~----~~~~--~~~-~~~~~~-~~~~~~~~~~~aGF~~v~~~~ 277 (299)
+ ...+|+++++.|+|||.++|.. +. ...... .+.. ... .+..++ ..-+.+.+ +++||+.+++..
T Consensus 154 d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll-~~AGf~~vkv~~ 232 (243)
T d1kyza2 154 DEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLA-KGAGFQGFKVHC 232 (243)
T ss_dssp HHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHH-HHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHH-HHcCCCcEEEEE
Confidence 4 5689999999999999666542 21 111111 1111 111 122222 33344555 569999999875
Q ss_pred cC
Q 022305 278 IS 279 (299)
Q Consensus 278 ~~ 279 (299)
..
T Consensus 233 ~~ 234 (243)
T d1kyza2 233 NA 234 (243)
T ss_dssp EE
T ss_pred eC
Confidence 54
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.68 E-value=5.4e-10 Score=100.48 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=70.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCC----CCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK----LPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~----lpf~~~~FD~Vis~ 205 (299)
..+|||++||+|...+.....+.+|+++|+|+.+++.++++ ++++++|. .+ ++...++||+|++.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~---~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA---FDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH---HHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccH---HHHhhhhHhhhcCCCEEEEc
Confidence 36899999999975454444567999999999999987753 67888886 33 34456789999975
Q ss_pred cc---------ccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 206 VS---------VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 206 ~~---------l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
-- .....+..+++..+.++|||||.+++...+
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 21 111123457888999999999988886544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.64 E-value=1.8e-09 Score=97.19 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred HHhhhcCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC---------CcEEEeccCC-CCCCCCCCCCee
Q 022305 132 AALTKYYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNL-NPKLPFEDNSFD 200 (299)
Q Consensus 132 ~~l~~~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~-~~~lpf~~~~FD 200 (299)
..+.+...+|||++||+|...+.....+ .+|+++|+|+.+++.++++ ++++++|+.. ...++...++||
T Consensus 140 ~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD 219 (324)
T d2as0a2 140 EKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFD 219 (324)
T ss_dssp GGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred HhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCC
Confidence 3333445789999999997444333333 5899999999999987653 5788888620 011334568899
Q ss_pred EEEeccc--cccc-------CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 201 VITNVVS--VDYL-------TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 201 ~Vis~~~--l~~~-------~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+|++.-- ..+- .+..+++....++|||||.+++....
T Consensus 220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9997421 1111 13456788899999999998887544
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.56 E-value=1.3e-08 Score=88.74 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=69.0
Q ss_pred hhhcCCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 134 LTKYYSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 134 l~~~~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
+.+...+|||+|||+|...+... ...++|+++|+|+.+++.+++ +++++++|. ..++. .+.||.|+
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~~~~~-~~~~D~Ii 179 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPG-ENIADRIL 179 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCC-CSCEEEEE
T ss_pred hcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---HHhcc-CCCCCEEE
Confidence 33456789999999997544332 344799999999999987654 267888998 55543 57899998
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+.. .+....++.+..++|||||.+.+.
T Consensus 180 ~~~----p~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 180 MGY----VVRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp ECC----CSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred ECC----CCchHHHHHHHHhhcCCCCEEEEE
Confidence 763 234456788899999999988653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=1.1e-08 Score=85.14 Aligned_cols=104 Identities=18% Similarity=0.156 Sum_probs=76.0
Q ss_pred HHHHHHhh-hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCC-----
Q 022305 128 DPAIAALT-KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL----- 192 (299)
Q Consensus 128 ~~~~~~l~-~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~l----- 192 (299)
+++++.+. +....+||++||+|. ..+....++++|+|+|.+++|++.+++ ++.++.++. .++
T Consensus 13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~ 89 (192)
T d1m6ya2 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLK 89 (192)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHH
Confidence 45566663 445789999999995 455555678999999999999998764 367788776 443
Q ss_pred CCCCCCeeEEEecccc--c-------ccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 193 PFEDNSFDVITNVVSV--D-------YLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 193 pf~~~~FD~Vis~~~l--~-------~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+..++||.|+.-..+ + .+....+.|..+.++|+|||.+++.
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii 140 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI 140 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence 2456889999865443 1 2334568899999999999976553
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.52 E-value=2.5e-09 Score=85.72 Aligned_cols=99 Identities=7% Similarity=-0.032 Sum_probs=67.3
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+|||+|||+|...+.....+ .+|+++|.++.+++.+++ +++++++|+. ..++...++||+|++.--
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~--~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE--RAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH--HHHHHBCSCEEEEEECCS
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccc--ccccccccccceeEechh
Confidence 3689999999997444332233 599999999999986544 2678888872 224556789999988521
Q ss_pred ccccCCHHHHHHHH--HhhccCCcEEEEEecCcc
Q 022305 208 VDYLTKPIEVFKEM--CQVLKPGGLAIVSFSNRC 239 (299)
Q Consensus 208 l~~~~d~~~~l~ei--~rvLkpGG~lii~~~~~~ 239 (299)
..-......+..+ .+.|+|||.++++.+...
T Consensus 93 -y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~ 125 (152)
T d2esra1 93 -YAKETIVATIEALAAKNLLSEQVMVVCETDKTV 125 (152)
T ss_dssp -SHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred -hccchHHHHHHHHHHCCCcCCCeEEEEEeCCCC
Confidence 1112234455544 367999999999866543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.44 E-value=2.2e-08 Score=83.65 Aligned_cols=62 Identities=8% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCceeeccCcCCccccCCCCC-CCeEEEEeCCHHHHHhcCCC---CcEEEeccCCCCCCCCCCCCeeEEEec
Q 022305 138 YSEVFPPSNTPGVSHFPPGYK-QDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNV 205 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~-~~~v~gvD~S~~ml~~a~~~---~~~~~~D~~~~~~lpf~~~~FD~Vis~ 205 (299)
..+|||+|||+|...+..... ..+|+|+|+++.+++.|+++ ++++++|+ ..++ +.||+|+++
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~---~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---SEIS---GKYDTWIMN 114 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---GGCC---CCEEEEEEC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEeh---hhcC---CcceEEEeC
Confidence 468999999999744333333 35799999999999988764 78999998 5553 679999997
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=4.2e-08 Score=85.79 Aligned_cols=98 Identities=7% Similarity=0.065 Sum_probs=64.1
Q ss_pred cCCceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
....++|+|||+|.... ....+..+|+++|+|+++++.|+++ +.+...|.. +.++...+.||+|+|+=
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~--~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL--EPFKEKFASIEMILSNP 187 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT--GGGGGGTTTCCEEEECC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccc--cccccccCcccEEEEcc
Confidence 34579999999996222 2245778999999999999988763 344556652 22333447899999981
Q ss_pred -----------cccccC--------CHHHHHHH-HHhhccCCcEEEEEec
Q 022305 207 -----------SVDYLT--------KPIEVFKE-MCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 -----------~l~~~~--------d~~~~l~e-i~rvLkpGG~lii~~~ 236 (299)
...|=+ |-..++++ +.+.|+|||.+++++.
T Consensus 188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 011111 11123323 5678999999999875
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=2.5e-08 Score=81.32 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=64.3
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC-------CcEEEeccCCC-CCCCCCCCCeeEEEecccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLN-PKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~-~~lpf~~~~FD~Vis~~~l 208 (299)
...+|||+|||+|...+.....+++++++|.|+.+++.++++ .++...+.... ........+||+|++.=
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP-- 118 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP-- 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC--
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc--
Confidence 346899999999985554444578999999999999987663 23444443100 01124557899999851
Q ss_pred cccCCHHHHHHHH--HhhccCCcEEEEEecCc
Q 022305 209 DYLTKPIEVFKEM--CQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 209 ~~~~d~~~~l~ei--~rvLkpGG~lii~~~~~ 238 (299)
.|-.+..+.+.++ ...|+|||.++++.+..
T Consensus 119 PY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 119 PYAMDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred ccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 1111333344444 35799999999986543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.38 E-value=8.1e-08 Score=81.12 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=67.3
Q ss_pred cCCceeeccCcCCcccc--CCCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-----CCCCCe
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSF 199 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-----f~~~~F 199 (299)
...+|||+|||+|.+.+ +... .+++++++|+++++++.+++ +++++.+|.. +.++ +..++|
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~--e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ--DLIPQLKKKYDVDTL 133 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH--HHGGGHHHHSCCCCE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccc--ccccchhhccccccc
Confidence 34689999999997444 3333 46899999999999987764 3788888873 2222 455789
Q ss_pred eEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 200 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 200 D~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|+|+.-..-.. ......+.+..++|||||+++++
T Consensus 134 D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 134 DMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEES
T ss_pred ceeeecccccc-cccHHHHHHHhCccCCCcEEEEe
Confidence 99997632111 11234577888999999988875
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.4e-07 Score=80.02 Aligned_cols=65 Identities=5% Similarity=-0.097 Sum_probs=46.5
Q ss_pred CceeeccCcCCccc--cCCCCCCCeEEEEeCCHHHHHhcCCC---------CcEEEeccCCCCCC-----CCCCCCeeEE
Q 022305 139 SEVFPPSNTPGVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL-----PFEDNSFDVI 202 (299)
Q Consensus 139 ~~vLDiGcG~G~~~--~~~~~~~~~v~gvD~S~~ml~~a~~~---------~~~~~~D~~~~~~l-----pf~~~~FD~V 202 (299)
.++||+|||+|... +....++.+++|+|+|+++++.|+++ +.++..+.. ..+ ...+++||+|
T Consensus 63 ~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 63 RRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK--TLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT--CSSTTTSTTCCSCCBSEE
T ss_pred ceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccH--HhhhhhhhhcccCceeEE
Confidence 47999999999733 33444678999999999999988764 344554431 111 2345789999
Q ss_pred Eec
Q 022305 203 TNV 205 (299)
Q Consensus 203 is~ 205 (299)
+|+
T Consensus 141 vsN 143 (250)
T d2h00a1 141 MCN 143 (250)
T ss_dssp EEC
T ss_pred Eec
Confidence 998
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.31 E-value=5e-08 Score=87.28 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=69.6
Q ss_pred cCCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC----------CCcEEEeccCCCCCC---CCCCCCeeEE
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKL---PFEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~----------~~~~~~~D~~~~~~l---pf~~~~FD~V 202 (299)
...+|||+.||+|...+.....+ .+|+++|+|+.+++.+++ +++++.+|+. ..+ .-..++||+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~--~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF--DYFKYARRHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH--HHHHHHHHTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH--HHHHHHHhhcCCCCEE
Confidence 35789999999997554433334 479999999999986654 2568888872 111 2245689999
Q ss_pred Eec---------ccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 203 TNV---------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 203 is~---------~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++- ....-..+..++++.+.++|+|||.++++...
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 963 11111234567889999999999999887654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=2.2e-08 Score=89.15 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCC----CCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL----PFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~l----pf~~~~FD~Vi 203 (299)
..+|||+.||+|...+.....+++|++||.|+.+++.|+++ ++|+++|+ .+. ....+.||+||
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~---~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA---MKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH---HHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH---HHhHHHHhhcCCCCCEEE
Confidence 45899999999986665555678999999999999987652 67888887 322 12357899999
Q ss_pred ec---cc------cccc-CCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NV---VS------VDYL-TKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~---~~------l~~~-~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+. ++ ..-+ .+....++.+.++|+|||.+++...+
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 73 11 1111 23455667788999999976655443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.28 E-value=6.4e-08 Score=80.96 Aligned_cols=63 Identities=10% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCCC-------CcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~~-------~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+|||+|||+|...+.....+ .+|+|+|+++.+++.++++ .+++.+|. ..+ ++.||+|+++-
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~---~~~---~~~fD~Vi~nP 117 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEF---NSRVDIVIMNP 117 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGC---CCCCSEEEECC
T ss_pred CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECch---hhh---CCcCcEEEEcC
Confidence 3589999999997443322334 5899999999999977653 56777777 443 46799999874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.5e-07 Score=79.77 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=73.9
Q ss_pred HHHHHhhh--cCCceeeccCcCCcccc--CCCCC-CCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC-
Q 022305 129 PAIAALTK--YYSEVFPPSNTPGVSHF--PPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP- 193 (299)
Q Consensus 129 ~~~~~l~~--~~~~vLDiGcG~G~~~~--~~~~~-~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp- 193 (299)
.++..|.+ ..++||++|||+|.+.+ +...+ +++++.+|++++..+.|++ +++++.+|+. +.++
T Consensus 49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~--e~l~~ 126 (219)
T d2avda1 49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL--ETLDE 126 (219)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH--HHHHH
T ss_pred HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh--hcchh
Confidence 34444533 45799999999997443 33333 6899999999999887765 3778888862 2222
Q ss_pred ----CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 194 ----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 194 ----f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..+++||+|+.-. .-.+....++.+.+.|+|||.++++
T Consensus 127 ~~~~~~~~~fD~ifiD~---dk~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDA---DKENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp HHHTTCTTCEEEEEECS---CSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcccCCccEEEEeC---CHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3467899999863 2245678889999999999999996
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.11 E-value=6.7e-07 Score=78.21 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=69.9
Q ss_pred hhcCCceeeccCcCCccc-cCCCCCCCeEEEEeCCHHHHHhcCC------------------CCcEEEeccCCCCCCCCC
Q 022305 135 TKYYSEVFPPSNTPGVSH-FPPGYKQDRIVGMGMNEEELKRNPV------------------LTEYVVQDLNLNPKLPFE 195 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~~~-~~~~~~~~~v~gvD~S~~ml~~a~~------------------~~~~~~~D~~~~~~lpf~ 195 (299)
.....+||-+|+|.|... ....++..+|+.||+++.+++.+++ +++++.+|. ...--.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da---~~~l~~ 146 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG---FEFIKN 146 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH---HHHHHH
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH---HHHHhc
Confidence 455689999999988522 2234455789999999999987653 357788887 322224
Q ss_pred CCCeeEEEecccccccCC-----HHHHHHHHHhhccCCcEEEEEecC
Q 022305 196 DNSFDVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 196 ~~~FD~Vis~~~l~~~~d-----~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+++||+|++-..-. ... -.++++.+++.|+|||.+++...+
T Consensus 147 ~~~yDvIi~D~~~~-~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s 192 (276)
T d1mjfa_ 147 NRGFDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 192 (276)
T ss_dssp CCCEEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCCEEEEeCCCC-CCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence 57899999643322 211 257899999999999999886543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.11 E-value=2.4e-06 Score=75.93 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCceeeccCcCCccccC-------CCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCCCCCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFP-------PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~-------~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~lpf~~~~FD~Vi 203 (299)
..+|||++||+|..... ......+++|+|+++.+++.|+. ...+..+|. . .....+.||+|+
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~---~-~~~~~~~fD~vi 193 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG---L-ANLLVDPVDVVI 193 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT---T-SCCCCCCEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccc---c-cccccccccccc
Confidence 35799999999963221 12234589999999999987754 255666665 2 234457899999
Q ss_pred ecccccccCC------------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 204 NVVSVDYLTK------------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 s~~~l~~~~d------------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
++-=+....+ ...++..+.+.|||||.+++.+|+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 8832211111 124688999999999998887775
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.10 E-value=6.3e-07 Score=79.76 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=70.1
Q ss_pred hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------------CCcEEEeccCCCCCCCCCCCCe
Q 022305 135 TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSF 199 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------------~~~~~~~D~~~~~~lpf~~~~F 199 (299)
....++||.+|.|.|. ..+....+..+|++||+++++++.+++ +++++.+|.. +-+.-.+++|
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~--~~l~~~~~~y 152 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR--AYLERTEERY 152 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH--HHHHHCCCCE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH--HHhhhcCCcc
Confidence 3456799999999885 233444456799999999999986653 3678888872 2223345789
Q ss_pred eEEEecccccccC-C------HHHHHHHHHhhccCCcEEEEEe
Q 022305 200 DVITNVVSVDYLT-K------PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 200 D~Vis~~~l~~~~-d------~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|+|++-..=.+.. . -.++++.+++.|||||.+++..
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9999643211111 1 2579999999999999998854
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.03 E-value=2.3e-06 Score=75.34 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=71.5
Q ss_pred hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCCCee
Q 022305 135 TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
.....+||-+|.|.|. ..+....+..+|++||+++.+++.+++ +++++.+|.. .-+.-.++.||
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yD 164 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA--EYVRKFKNEFD 164 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHGGGCSSCEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHH--HHHhcCCCCCC
Confidence 3456899999999885 333333345789999999999997654 3677888873 22333467899
Q ss_pred EEEeccccccc-C----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 201 VITNVVSVDYL-T----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 201 ~Vis~~~l~~~-~----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+|++-..-... + --.++++.+++.|+|||.+++...++
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 99965332211 1 13689999999999999999876554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=9.8e-07 Score=72.35 Aligned_cols=96 Identities=8% Similarity=-0.069 Sum_probs=66.1
Q ss_pred CCceeeccCcCCccccC-CCCCCCeEEEEeCCHHHHHhcCCC--------CcEEEeccCCCCCCCCCCCCeeEEEecccc
Q 022305 138 YSEVFPPSNTPGVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 208 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~-~~~~~~~v~gvD~S~~ml~~a~~~--------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l 208 (299)
..++||++||+|...+. ......+|+.||.++.+++.++++ .+++..|+. ..+...+.+||+|++.==.
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~--~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM--SFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH--HHHSSCCCCEEEEEECCSS
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccc--ccccccccccCEEEEcCcc
Confidence 36899999999975543 333335899999999999866542 556667752 2234456789999986211
Q ss_pred cccCCHHHHHHHHHh--hccCCcEEEEEec
Q 022305 209 DYLTKPIEVFKEMCQ--VLKPGGLAIVSFS 236 (299)
Q Consensus 209 ~~~~d~~~~l~ei~r--vLkpGG~lii~~~ 236 (299)
......+.+..+.+ +|+|+|.++++..
T Consensus 122 -~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 122 -RRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp -STTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -ccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 12345666666654 6999999999854
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.92 E-value=4.7e-06 Score=72.61 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=71.7
Q ss_pred hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCCCee
Q 022305 135 TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
.....+||-+|.|.|. ..+....+..+++.+||++++++.+++ +++++.+|.. .-+.-.+++||
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~--~~l~~~~~~yD 150 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF--MHIAKSENQYD 150 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH--HHHHTCCSCEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHH--HHHhhcCCCCC
Confidence 3456799999999886 333333345799999999999987644 3677888862 22233467899
Q ss_pred EEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 201 VITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 201 ~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+|+.-..-..-. --.++++.+++.|+|||.++....++
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 999664321111 13689999999999999999875543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=6.8e-06 Score=68.58 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=67.5
Q ss_pred CCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
..+++|+|+|.|.--+ +..+|..+++.+|.+..=+...+ .+++++...+ +++. .+.+||+|+|..+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~~~-~~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEFP-SEPPFDGVISRAF 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTSC-CCSCEEEEECSCS
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccch---hhhc-cccccceehhhhh
Confidence 3689999999997332 22357899999999986654322 2467777787 6654 3567999999754
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..+..+++-+.+.+++||.+++--
T Consensus 142 ----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 ----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 468889999999999999887753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.87 E-value=1.7e-06 Score=73.41 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=73.1
Q ss_pred HHHHhh--hcCCceeeccCcCCccccC--CCC-CCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCC--
Q 022305 130 AIAALT--KYYSEVFPPSNTPGVSHFP--PGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-- 193 (299)
Q Consensus 130 ~~~~l~--~~~~~vLDiGcG~G~~~~~--~~~-~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lp-- 193 (299)
++..+. ....+||++|+++|.+.+. ... .+++++.+|.+++..+.|++ +++++.+|.. +.++
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~--~~L~~l 127 (227)
T d1susa1 50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL--PVLDEM 127 (227)
T ss_dssp HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHHH
T ss_pred HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHH--HHHHHH
Confidence 444442 2457999999999974443 222 36899999999999887765 3778888872 2232
Q ss_pred ----CCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 194 ----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 194 ----f~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
..+++||+|+.-. .-.+....++.+.+.|+|||.++++
T Consensus 128 ~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 128 IKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HhccccCCceeEEEecc---chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 1356899999863 2246778899999999999999997
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=8.2e-06 Score=71.57 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=71.5
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCC-CCCCCCee
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL-PFEDNSFD 200 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~l-pf~~~~FD 200 (299)
....+||=+|.|.|. ..+....+..+++++|+++++++.+++ +++.+.+|.. ..+ ...+++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~--~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV--AFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH--HHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH--HHHhhccccCcc
Confidence 456799999999886 333433345799999999999997754 3678888862 222 23457899
Q ss_pred EEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 201 VITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 201 ~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+|+.-..-..-. --.++++.+++.|+|||.+++...+.
T Consensus 157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 999753321111 12679999999999999999976553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=4.2e-06 Score=73.28 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=70.0
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCCCeeE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
...++||-+|.|.|. ..+....+..+++.+|+++++++.+++ +++.+.+|.. .-+.-.+++||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~--~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF--EFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHH--HHHhcCCCCCCE
Confidence 456789999999885 333333346799999999999997754 3678888862 223334578999
Q ss_pred EEecccccc-cC---CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 202 ITNVVSVDY-LT---KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 202 Vis~~~l~~-~~---d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
|++-..-.. .+ --.++++.+++.|+|||.+++...++
T Consensus 155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 997532111 11 12468999999999999999876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.80 E-value=2.9e-06 Score=69.43 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=67.8
Q ss_pred CCceeeccCcCCccccCCCCCC-CeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCC-CC---CCCCCeeEEE
Q 022305 138 YSEVFPPSNTPGVSHFPPGYKQ-DRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LP---FEDNSFDVIT 203 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~~~~-~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~-lp---f~~~~FD~Vi 203 (299)
..+|||+.||+|...+.....+ .+|++||.|+.+++.+++ +++++.+|+ .+ +. -+..+||+|+
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~---~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA---NRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH---HHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc---hhhhhhhcccCCCcceEE
Confidence 3689999999997444333234 579999999999987654 366788887 32 22 2456899998
Q ss_pred ecccccccCCHHHHHHHHH--hhccCCcEEEEEecCc
Q 022305 204 NVVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNR 238 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~--rvLkpGG~lii~~~~~ 238 (299)
+-== ....+....+..+. .+|+|||.++++.+..
T Consensus 119 lDPP-Y~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 119 LDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp ECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred echh-hhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 7521 12345677777775 4799999999986543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.79 E-value=7.4e-06 Score=67.96 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=64.6
Q ss_pred cCCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCCCCCCeeEEEecccccccC-
Q 022305 137 YYSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT- 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~- 212 (299)
...+|||+|||+|..... .......++|+|+++.+++.++. ...+.+|. .... ....||+|+++--.....
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~-~~~~~~~~---~~~~-~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW-AEGILADF---LLWE-PGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT-EEEEESCG---GGCC-CSSCEEEEEECCCCCCBSC
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc-ceeeeeeh---hccc-cccccceecccCccccccc
Confidence 446899999999963221 11234679999999988776654 45566665 2222 346799999874432110
Q ss_pred ---------------------------C-HHHHHHHHHhhccCCcEEEEEecC
Q 022305 213 ---------------------------K-PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 213 ---------------------------d-~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+ ...++....+.|||||.+.+.+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 1 125578889999999998887764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.77 E-value=6e-06 Score=73.06 Aligned_cols=102 Identities=14% Similarity=0.014 Sum_probs=68.0
Q ss_pred hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC------------CCcEEEeccCCCCCCCCCCCCee
Q 022305 135 TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFD 200 (299)
Q Consensus 135 ~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~------------~~~~~~~D~~~~~~lpf~~~~FD 200 (299)
.....+||-+|.|.|. ..+....+..+|+.+|+++++++.+++ +++++.+|.. .-+.-.+++||
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~--~~l~~~~~~yD 181 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF--EFLKNHKNEFD 181 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH--HHHHHCTTCEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH--HHHHhCCCCCC
Confidence 3456799999999885 333333344799999999999997654 2566777762 22223467899
Q ss_pred EEEecccccccC----CHHHHHHHHHhhccCCcEEEEEecCc
Q 022305 201 VITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 201 ~Vis~~~l~~~~----d~~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
+|++-..-..-+ --.++++.+++.|+|||.++....+.
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 999754322111 12578999999999999999875543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.00013 Score=63.52 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=62.3
Q ss_pred hcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC-------CCcEEEeccCCCCCC--CCCCCCeeEEE-
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL--PFEDNSFDVIT- 203 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~-------~~~~~~~D~~~~~~l--pf~~~~FD~Vi- 203 (299)
+...+|||+++|+|. .++.....+..|+++|+++.-++..++ ....+..+. ... ....+.||.|+
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~~~~~~~~fd~IL~ 177 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQWCGEQQFDRILL 177 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHHHTTCCEEEEEE
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccchhcccccccEEEE
Confidence 455789999999996 333333455889999999876654332 122233222 111 13456799999
Q ss_pred ---ec--ccccccCCH----------------HHHHHHHHhhccCCcEEEEEecC
Q 022305 204 ---NV--VSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 204 ---s~--~~l~~~~d~----------------~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|+ .++..-++. .+.|....+.|||||.++-++-.
T Consensus 178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 32 223222221 36788899999999988887654
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.46 E-value=4.4e-05 Score=64.59 Aligned_cols=98 Identities=10% Similarity=-0.060 Sum_probs=62.7
Q ss_pred cCCceeeccCcCCccccC------CCCCCCeEEEEeCCHHHHHhcC---CCCcEEEeccCCCCCCC-CCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFP------PGYKQDRIVGMGMNEEELKRNP---VLTEYVVQDLNLNPKLP-FEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~------~~~~~~~v~gvD~S~~ml~~a~---~~~~~~~~D~~~~~~lp-f~~~~FD~Vis~~ 206 (299)
....||++|++.|.+.+. .....++++|+|+.+...+... ++++++++|....+.+. +....+|+|+.-.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 356899999998864321 1224689999999876654332 35889999873222222 3455788877533
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEEEec
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 236 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii~~~ 236 (299)
-|+-.....-+ ++...|||||++|++..
T Consensus 160 -~H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 160 -AHANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp -SCSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred -CcchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 23322222223 46789999999999754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.43 E-value=9.2e-05 Score=62.81 Aligned_cols=91 Identities=9% Similarity=0.084 Sum_probs=65.5
Q ss_pred cCCceeeccCcCCcccc--CCCCCCCeEEEEeCCHHHHHhcC--------CCCcEEEeccCCCCCCCC---CCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHF--PPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF---EDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~--~~~~~~~~v~gvD~S~~ml~~a~--------~~~~~~~~D~~~~~~lpf---~~~~FD~Vi 203 (299)
...+++|+|+|.|.--+ +..+++.+++-+|.+..=...-+ .++..+...+ +.+.. ..++||+|+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~---E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HHHTTCTTTTTCEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh---hhccccccccccceEEE
Confidence 34689999999997222 22357889999999986655322 2356666665 44432 246799999
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
|.. +..+...+.-....+++||.+++-
T Consensus 147 sRA----va~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 147 ARA----VARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EEC----CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred Ehh----hhCHHHHHHHHhhhcccCCEEEEE
Confidence 974 457889999999999999988774
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.42 E-value=7.9e-06 Score=69.98 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=57.9
Q ss_pred HHHHhh-hcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC------CcEEEeccCCCCCCCCCCCCeeEE
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVI 202 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~------~~~~~~D~~~~~~lpf~~~~FD~V 202 (299)
+++.+. ...+.|||||||+|..+......+.+|++||+++.+++.++++ ++++.+|+ .+++++...++.|
T Consensus 21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~---l~~~~~~~~~~~v 97 (245)
T d1yuba_ 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI---LQFQFPNKQRYKI 97 (245)
T ss_dssp HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC---TTTTCCCSSEEEE
T ss_pred HHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhh---hccccccceeeeE
Confidence 344442 3456899999999975444433467999999999999877653 67888998 7888888888888
Q ss_pred EecccccccC
Q 022305 203 TNVVSVDYLT 212 (299)
Q Consensus 203 is~~~l~~~~ 212 (299)
+++.- .|+.
T Consensus 98 v~NLP-Y~Is 106 (245)
T d1yuba_ 98 VGNIP-YHLS 106 (245)
T ss_dssp EEECC-SSSC
T ss_pred eeeee-hhhh
Confidence 87754 3554
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00038 Score=56.28 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=61.8
Q ss_pred hcCCceeeccCcCCc--cccC-CCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCC-----CCCCCCeeEEEeccc
Q 022305 136 KYYSEVFPPSNTPGV--SHFP-PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVVS 207 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~-~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~~ 207 (299)
+...+|||+||++|. .... .......++|+|+.+- ..-....++.+|+...... ....+.||+|+|-.+
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---cccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 345689999999995 1111 1223578999998771 1123467888887321100 124568999998765
Q ss_pred ccccCC-----------HHHHHHHHHhhccCCcEEEEEe
Q 022305 208 VDYLTK-----------PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 208 l~~~~d-----------~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..--.+ ....+.-+.++||+||.+++-+
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 443321 1255666789999999999964
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.13 E-value=7.1e-05 Score=60.80 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=61.6
Q ss_pred CceeeccCcCCcccc-CCCCCCCeEEEEeCCHHHHHhcCCC----------CcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 139 SEVFPPSNTPGVSHF-PPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~-~~~~~~~~v~gvD~S~~ml~~a~~~----------~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
.++||+-||+|..-+ +.......|+.||.+...++..+++ ..+...|............+||+|++-=
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP- 123 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP- 123 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC-
T ss_pred ceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech-
Confidence 689999999997444 3333345899999999998754432 2333344310022234456799998752
Q ss_pred cccc-CCHHHHHHHHH--hhccCCcEEEEEecC
Q 022305 208 VDYL-TKPIEVFKEMC--QVLKPGGLAIVSFSN 237 (299)
Q Consensus 208 l~~~-~d~~~~l~ei~--rvLkpGG~lii~~~~ 237 (299)
.|- ......+..+. .+|+++|.++++.+.
T Consensus 124 -PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 124 -PFHFNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp -CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred -hHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 111 23456666664 479999999998654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.10 E-value=0.00034 Score=61.57 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=64.7
Q ss_pred hcCCceeeccCcCCc--cccCC-CCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCCCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTPGV--SHFPP-GYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~-~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~~~~FD~Vis 204 (299)
+...+|||+++|+|. .++.. ....+.++++|+++.-++..++ ++.....|. ..++..++.||.|+.
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~---~~~~~~~~~fD~ILv 191 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIGELNVEFDKILL 191 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGGGGCCCEEEEEE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccc---cccccccccccEEEE
Confidence 455789999999996 33332 2235789999999887765443 233444454 455666788999983
Q ss_pred ----cc--cccccCC----------------HHHHHHHHHhhccCCcEEEEEecC
Q 022305 205 ----VV--SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 205 ----~~--~l~~~~d----------------~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+. ++..-++ ..+.|.+..+.|||||.++-++-.
T Consensus 192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 22 2221111 126788899999999988877654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.05 E-value=0.00011 Score=59.77 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=69.6
Q ss_pred HHHHHHh-hhcCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHHhcCC----CCcEEEeccCCCCCCC-----CC
Q 022305 128 DPAIAAL-TKYYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP-----FE 195 (299)
Q Consensus 128 ~~~~~~l-~~~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~----~~~~~~~D~~~~~~lp-----f~ 195 (299)
+++++.| .+.-..++|..+|.|. ..+.. .+++|+|+|..+.+++.+++ ++.+++.+. ..+. +.
T Consensus 8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~--~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~ 82 (182)
T d1wg8a2 8 QEALDLLAVRPGGVYVDATLGGAGHARGILE--RGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALG 82 (182)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhc--ccCcEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcC
Confidence 4456666 3556789999999885 22222 36899999999999988765 366777665 3332 34
Q ss_pred CCCeeEEEeccccc--ccCC-------HHHHHHHHHhhccCCcEEEEE
Q 022305 196 DNSFDVITNVVSVD--YLTK-------PIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 196 ~~~FD~Vis~~~l~--~~~d-------~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+.+|.|+.-..+. ++.+ ....|.....+|+|||.+++.
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 57799999644332 2322 345788889999999977654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.95 E-value=7.4e-05 Score=63.29 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=49.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEeccCCCCCCCCCCCCeeEEEecccccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 210 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~ 210 (299)
..+.||++|||+|..+......+.+|++||+++.+++..++ +++++.+|+ .+++++......|+++ .-.+
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~---l~~~~~~~~~~~vv~N-LPYn 96 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI---LQFKFPKNQSYKIFGN-IPYN 96 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG---GGCCCCSSCCCEEEEE-CCGG
T ss_pred CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhh---hhccccccccceeeee-ehhh
Confidence 45789999999997443333346799999999999876543 478899999 6666655544455554 3334
Q ss_pred c
Q 022305 211 L 211 (299)
Q Consensus 211 ~ 211 (299)
+
T Consensus 97 I 97 (235)
T d1qama_ 97 I 97 (235)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.95 E-value=0.00057 Score=62.44 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=67.0
Q ss_pred HHHHhh-hcCCceeeccCcCCccccC------CCCC---------CCeEEEEeCCHHHHHhcCC----------CCcEEE
Q 022305 130 AIAALT-KYYSEVFPPSNTPGVSHFP------PGYK---------QDRIVGMGMNEEELKRNPV----------LTEYVV 183 (299)
Q Consensus 130 ~~~~l~-~~~~~vLDiGcG~G~~~~~------~~~~---------~~~v~gvD~S~~ml~~a~~----------~~~~~~ 183 (299)
+.+.+. ....+|+|+.||+|..... .... ...+.|+|+++.+...|+- ......
T Consensus 154 mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~ 233 (425)
T d2okca1 154 MVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC 233 (425)
T ss_dssp HHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE
T ss_pred hheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeec
Confidence 344442 3457899999999962221 1111 1359999999999876642 245666
Q ss_pred eccCCCCCCCCCCCCeeEEEecccc--cccC--------------C-HHHHHHHHHhhccCCcEEEEEecC
Q 022305 184 QDLNLNPKLPFEDNSFDVITNVVSV--DYLT--------------K-PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 184 ~D~~~~~~lpf~~~~FD~Vis~~~l--~~~~--------------d-~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.|. .. ......||+|+++==+ .... + -..++..+.+.|||||.+.+.+|+
T Consensus 234 ~d~---l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 234 EDS---LE-KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp CCT---TT-SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred Cch---hh-hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 665 22 2345789999987221 1110 1 135889999999999988887775
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00029 Score=62.68 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=65.3
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCC-CCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLN-PKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~-~~lpf~~~~FD~Vis~~~ 207 (299)
...+|||+-||.|+..+..+....+|+|+|+++.+++.|++ +++|+.+|.... ...+.....||+|+..=-
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPP 291 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 291 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCC
Confidence 34679999999999777776677899999999999987765 378888887311 112334577999875410
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
= .-..++++++.+. +|.-.++++.
T Consensus 292 R---~G~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 292 R---AGAAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp T---TCCHHHHHHHHHH-CCSEEEEEES
T ss_pred C---ccHHHHHHHHHHc-CCCEEEEEeC
Confidence 0 0113466666653 7777777874
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.35 E-value=0.00053 Score=61.79 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=65.1
Q ss_pred CCceeeccCcCCccccC--CCCCCCeEEEEeCCHHHHHhcCCCC-----------------------cEEEeccCCCCCC
Q 022305 138 YSEVFPPSNTPGVSHFP--PGYKQDRIVGMGMNEEELKRNPVLT-----------------------EYVVQDLNLNPKL 192 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~--~~~~~~~v~gvD~S~~ml~~a~~~~-----------------------~~~~~D~~~~~~l 192 (299)
..+|||..||+|...+. ...+..+|+.+|+|+..++.+++++ .....|++ ..+
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~--~~~ 123 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN--RLM 123 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH--HHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh--hhh
Confidence 36899999999974442 2234568999999999998776531 22333331 111
Q ss_pred CCCCCCeeEEEecccccccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 193 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 193 pf~~~~FD~Vis~~~l~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.-..+.||+|..- -+..+..+|....+.+|.||++.++...
T Consensus 124 ~~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 1234579988754 2557788999999999999999998544
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0023 Score=59.85 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=60.4
Q ss_pred cCCceeeccCcCCcccc------CCCCC--------------CCeEEEEeCCHHHHHhcCCC-------------CcEEE
Q 022305 137 YYSEVFPPSNTPGVSHF------PPGYK--------------QDRIVGMGMNEEELKRNPVL-------------TEYVV 183 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~------~~~~~--------------~~~v~gvD~S~~ml~~a~~~-------------~~~~~ 183 (299)
...+|+|+.||+|.... ..... ...++|+|+++.+...|+-+ .....
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 34589999999996221 11110 13699999999988765421 12233
Q ss_pred eccCCCCCC-CCCCCCeeEEEecc--ccccc-----------CC-HHHHHHHHHhhccCCcEEEEEecC
Q 022305 184 QDLNLNPKL-PFEDNSFDVITNVV--SVDYL-----------TK-PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 184 ~D~~~~~~l-pf~~~~FD~Vis~~--~l~~~-----------~d-~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
.+. ... .....+||+|+++= ...+- .+ -..++..+.+.|||||.+.+.+|+
T Consensus 244 ~~~---l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~ 309 (524)
T d2ar0a1 244 GNT---LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 309 (524)
T ss_dssp SCT---TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hhh---hhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence 332 111 12346799999872 11111 11 234889999999999998887774
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.89 E-value=0.0089 Score=50.29 Aligned_cols=97 Identities=10% Similarity=-0.055 Sum_probs=56.3
Q ss_pred cCCceeeccCcCCc--cccCCCCCCCeEEEEeCCHHHHH--hcCC-----CCcEEEeccCCCCCCCCCCCCeeEEEeccc
Q 022305 137 YYSEVFPPSNTPGV--SHFPPGYKQDRIVGMGMNEEELK--RNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 207 (299)
Q Consensus 137 ~~~~vLDiGcG~G~--~~~~~~~~~~~v~gvD~S~~ml~--~a~~-----~~~~~~~D~~~~~~lpf~~~~FD~Vis~~~ 207 (299)
...+|+|+|||.|. .......+...+.|+|+--...+ ...+ .+++...+. -.-.+.+..|+|+|-.+
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~d----v~~l~~~~~D~vlcDm~ 141 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVD----VFFIPPERCDTLLCDIG 141 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCC----TTTSCCCCCSEEEECCC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhh----HHhcCCCcCCEEEeeCC
Confidence 34579999999886 22222334457777777322100 0011 122222221 11235678999999865
Q ss_pred ccccCCH-------HHHHHHHHhhccCCcEEEEEecCc
Q 022305 208 VDYLTKP-------IEVFKEMCQVLKPGGLAIVSFSNR 238 (299)
Q Consensus 208 l~~~~d~-------~~~l~ei~rvLkpGG~lii~~~~~ 238 (299)
- .-+++ .++++-+.+.|+|||.|++-+-.+
T Consensus 142 e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 142 E-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp C-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred C-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 3 23332 256777789999999999986654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.015 Score=49.97 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=43.2
Q ss_pred hcCCceeeccCcCCc--cccCCC-CCCCeEEEEeCCHHHHHhcCC--------CCcEEEeccCCCCCCCCC---CCCeeE
Q 022305 136 KYYSEVFPPSNTPGV--SHFPPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE---DNSFDV 201 (299)
Q Consensus 136 ~~~~~vLDiGcG~G~--~~~~~~-~~~~~v~gvD~S~~ml~~a~~--------~~~~~~~D~~~~~~lpf~---~~~FD~ 201 (299)
+...+|||+++|+|. .+++.. .....|+++|+++.=++..++ ++.+...|. ..+... .+.||.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~---~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF---LAVSPSDPRYHEVHY 169 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGSCTTCGGGTTEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhh---hhhcccccccceeeE
Confidence 445789999999986 333322 235789999999877664333 356666776 444322 256999
Q ss_pred EE
Q 022305 202 IT 203 (299)
Q Consensus 202 Vi 203 (299)
|+
T Consensus 170 VL 171 (293)
T d2b9ea1 170 IL 171 (293)
T ss_dssp EE
T ss_pred Ee
Confidence 99
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0067 Score=51.27 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=38.5
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC------CCcEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDL 186 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~------~~~~~~~D~ 186 (299)
..+.||++|||.|..+......+.+|+++|+++.+++..++ +++++.+|+
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~ 76 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhh
Confidence 45789999999997444444456899999999999875433 367888888
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.43 E-value=0.039 Score=48.76 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCCCCCCCCeeEEEecccccccCC---------------------------------HHHHHHHHHhhccCCcEEEEEe
Q 022305 190 PKLPFEDNSFDVITNVVSVDYLTK---------------------------------PIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 190 ~~lpf~~~~FD~Vis~~~l~~~~d---------------------------------~~~~l~ei~rvLkpGG~lii~~ 235 (299)
..--||+++.|+++|+.++||+.+ ...+|+.=.+-|+|||.+++.+
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 334489999999999999999842 2247777788899999988875
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.01 Score=50.79 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=46.0
Q ss_pred cCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCC---------CCcEEEeccCCCCCCCCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~---------~~~~~~~D~~~~~~lpf~~~~FD~Vis~~ 206 (299)
..+.||++|+|.|..+......+.+|+++++++.+++..++ +++++.+|+ ....++ .++.|+++.
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~---l~~~~~--~~~~vV~NL 94 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---LKTDLP--FFDTCVANL 94 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---TTSCCC--CCSEEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH---hhhhhh--hhhhhhcch
Confidence 34689999999997444443446799999999999875432 367888998 555443 356777663
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.56 E-value=0.047 Score=43.82 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred hcCCceeeccCcC-Cc--cccCCCCCCCeEEEEeCCHHHHHhcCCCCcEEEeccCCCCCCCC--------CCCCeeEEEe
Q 022305 136 KYYSEVFPPSNTP-GV--SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF--------EDNSFDVITN 204 (299)
Q Consensus 136 ~~~~~vLDiGcG~-G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~~~~~~~D~~~~~~lpf--------~~~~FD~Vis 204 (299)
+.-++||-+|||. |. ..+.......+|+++|.+++-++.+++.---...+. ..-++ ....+|+++-
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~---~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLS---LDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETT---SSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeC---CCcCHHHHHHHHhCCCCcEEEEE
Confidence 3457899999984 32 222223345699999999999999887522223332 11111 2346899995
Q ss_pred ccccc------c---cCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVD------Y---LTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~------~---~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
....+ + .....+.++++.++++|||.+++.
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 43321 1 123467999999999999987664
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.10 E-value=0.0055 Score=48.10 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=54.7
Q ss_pred cCCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCCCCCCCeeEEEecccccccC
Q 022305 137 YYSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 212 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~ 212 (299)
.-++||-+|+| |.+.+. ....+++|+++|.|++-++.+++. .+......+..+...-..+.||+|+....-.+-.
T Consensus 27 ~g~~vlI~GaG-~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~ 105 (168)
T d1piwa2 27 PGKKVGIVGLG-GIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI 105 (168)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC
T ss_pred CCCEEEEECCC-CcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc
Confidence 45688999987 332222 123478999999999999888774 2322221110011112346799988653322211
Q ss_pred CHHHHHHHHHhhccCCcEEEE
Q 022305 213 KPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 213 d~~~~l~ei~rvLkpGG~lii 233 (299)
.+....++|||||.+++
T Consensus 106 ----~~~~~~~~l~~~G~iv~ 122 (168)
T d1piwa2 106 ----DFNIMPKAMKVGGRIVS 122 (168)
T ss_dssp ----CTTTGGGGEEEEEEEEE
T ss_pred ----hHHHHHHHhhccceEEE
Confidence 13567889999997765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.72 E-value=0.053 Score=41.93 Aligned_cols=90 Identities=9% Similarity=0.011 Sum_probs=55.9
Q ss_pred cCCceeeccCcCCcccc---CCCCCCCeEEEEeCCHHHHHhcCCC-Cc-EEEeccCCCCCCC--------CCCCCeeEEE
Q 022305 137 YYSEVFPPSNTPGVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TE-YVVQDLNLNPKLP--------FEDNSFDVIT 203 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~---~~~~~~~~v~gvD~S~~ml~~a~~~-~~-~~~~D~~~~~~lp--------f~~~~FD~Vi 203 (299)
.-++||-+||| +.+.+ .....+++|+++|.+++-++.+++. .. .+..+... +... ...+.+|+|+
T Consensus 26 ~g~~vlV~G~G-~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~-~~~~~~~~~~~~~~g~g~D~vi 103 (170)
T d1e3ja2 26 LGTTVLVIGAG-PIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAK-EEESSIIERIRSAIGDLPNVTI 103 (170)
T ss_dssp TTCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTT-SCHHHHHHHHHHHSSSCCSEEE
T ss_pred CCCEEEEEccc-ccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccc-cccchhhhhhhcccccCCceee
Confidence 45678888987 22222 1223568999999999999988764 22 23323210 0000 0134689888
Q ss_pred ecccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 204 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 204 s~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
-.-. -...+.+..++|+|||.+++-
T Consensus 104 d~~g------~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 104 DCSG------NEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp ECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred ecCC------ChHHHHHHHHHHhcCCceEEE
Confidence 5432 246788899999999987763
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.51 E-value=0.029 Score=46.80 Aligned_cols=53 Identities=26% Similarity=0.260 Sum_probs=35.2
Q ss_pred EEEeccCCCCCC-CCCCCCeeEEEecc----c-------ccccCCHHHHHHHHHhhccCCcEEEEEe
Q 022305 181 YVVQDLNLNPKL-PFEDNSFDVITNVV----S-------VDYLTKPIEVFKEMCQVLKPGGLAIVSF 235 (299)
Q Consensus 181 ~~~~D~~~~~~l-pf~~~~FD~Vis~~----~-------l~~~~d~~~~l~ei~rvLkpGG~lii~~ 235 (299)
|+++|.- +-| .++++++|+|+..= . ..|+......+.++.|+|||||.+++-.
T Consensus 7 ~~~~D~l--e~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 7 YDVCDCL--DTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEECCHH--HHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEechHH--HHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 5566651 112 36789999998641 1 1233345778999999999999887754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.70 E-value=0.067 Score=41.97 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=53.9
Q ss_pred cCCceeeccCc-CCc--cccCCCCCCC-eEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC--------C-CCCCCeeEE
Q 022305 137 YYSEVFPPSNT-PGV--SHFPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL--------P-FEDNSFDVI 202 (299)
Q Consensus 137 ~~~~vLDiGcG-~G~--~~~~~~~~~~-~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l--------p-f~~~~FD~V 202 (299)
..++||-+|+| .|. ..++.. .++ +|+++|.+++-++.+++. .+.. .|... +.. . ...+.+|+|
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~-~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARS-LGAENVIVIAGSPNRLKLAEEIGADLT-LNRRE-TSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH-TTBSEEEEEESCHHHHHHHHHTTCSEE-EETTT-SCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCccchhheecccc-cccccccccccccccccccccccceEE-Eeccc-cchHHHHHHHHHhhCCCCceEE
Confidence 34688889987 232 122222 354 899999999999988775 2222 22210 111 0 123459998
Q ss_pred EecccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 203 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 203 is~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
+-.-.- ...+++..+.|+|||.+++
T Consensus 105 id~vG~------~~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 105 LEATGD------SRALLEGSELLRRGGFYSV 129 (182)
T ss_dssp EECSSC------TTHHHHHHHHEEEEEEEEE
T ss_pred eecCCc------hhHHHHHHHHhcCCCEEEE
Confidence 855321 3457888999999998765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.54 E-value=0.031 Score=47.39 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=42.9
Q ss_pred ccHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 126 IDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 126 l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
|.+.++....+.-+.|||+=||+|+...+....+.+.+|+|++++.++.+.++
T Consensus 239 L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 239 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR 291 (320)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred HHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Confidence 33455666667778999999999997777666789999999999999988764
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=89.25 E-value=0.51 Score=40.09 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=69.2
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCC-CCCCeEEEEeCCHHHHHhcC-----------CCCcEEEeccCCCCCCC--
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPG-YKQDRIVGMGMNEEELKRNP-----------VLTEYVVQDLNLNPKLP-- 193 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~-~~~~~v~gvD~S~~ml~~a~-----------~~~~~~~~D~~~~~~lp-- 193 (299)
+.+.+.+......|+.+|||-=+..+... .++.+++=||. |++++.-+ .....+..|++ ..+.
T Consensus 80 ~~~~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~--~~~~~~ 156 (297)
T d2uyoa1 80 TYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLR--QDWPPA 156 (297)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTT--SCHHHH
T ss_pred HHHHHHHhhCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEeccccc--chHHHH
Confidence 33344445555678889998655444333 35678889995 66655211 12456667774 2221
Q ss_pred -----CCCCCeeEEEecccccccC--CHHHHHHHHHhhccCCcEEEEEecC
Q 022305 194 -----FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 194 -----f~~~~FD~Vis~~~l~~~~--d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
|..+.-=++++-.++.|++ +..++|+.+.....||+.++++..+
T Consensus 157 L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 157 LRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp HHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred HHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 2223334677777899986 5678999999999999999998755
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=89.15 E-value=0.029 Score=46.10 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCC
Q 022305 128 DPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVL 178 (299)
Q Consensus 128 ~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~ 178 (299)
+.+++...+..+.|||.=||+|+...+....+.+.+|+|++++.++.|+++
T Consensus 203 ~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 203 ERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp HHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 445555566678899999999997777766789999999999999888653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.14 Score=39.57 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=56.3
Q ss_pred cCCceeeccCcCCccccC---CCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCC------CCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNTPGVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL------PFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~~---~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~l------pf~~~~FD~Vis~~ 206 (299)
..++||-.|++.|.+... ....++++++++.|++-++.+++. .+.+ .|... +++ ....+.||+|+...
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~v-i~~~~-~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEV-FNHRE-VNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEE-EETTS-TTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccc-ccccc-ccHHHHhhhhhccCCceEEeecc
Confidence 345789988754443332 233478999999999888877764 2222 23310 111 12356799999764
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. ...+++..++|+|+|.++.
T Consensus 106 g-------~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 106 A-------NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp H-------HHHHHHHHHHEEEEEEEEE
T ss_pred c-------HHHHHHHHhccCCCCEEEE
Confidence 2 2467888999999998775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.94 E-value=0.16 Score=38.97 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=55.0
Q ss_pred ceeeccCc-CCc---cccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCCCCCCCeeEEEecccccccCC
Q 022305 140 EVFPPSNT-PGV---SHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 213 (299)
Q Consensus 140 ~vLDiGcG-~G~---~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lpf~~~~FD~Vis~~~l~~~~d 213 (299)
+|+=+||| -|. ..+.......+|+|+|.+++.++.+++. +.....+. . ...+...|+|+..-- ...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~dlIila~p---~~~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---A--KVEDFSPDFVMLSSP---VRT 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCG---G--GGGGTCCSEEEECSC---HHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhh---h--hhhccccccccccCC---chh
Confidence 46778998 343 1222222346899999999999988764 22233232 1 123345798886642 234
Q ss_pred HHHHHHHHHhhccCCcEEEEEecC
Q 022305 214 PIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 214 ~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
..+++.++.+.++++- +++++..
T Consensus 75 ~~~vl~~l~~~~~~~~-ii~d~~s 97 (171)
T d2g5ca2 75 FREIAKKLSYILSEDA-TVTDQGS 97 (171)
T ss_dssp HHHHHHHHHHHSCTTC-EEEECCS
T ss_pred hhhhhhhhhccccccc-ccccccc
Confidence 5678889999998875 5555444
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.29 Score=37.57 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=56.0
Q ss_pred cCCceeeccCcC-Cc--cccCCCCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC--------CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTP-GV--SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP--------FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~-G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp--------f~~~~FD~Vis 204 (299)
.-++||=+|||+ |. ..++......+|+++|.+++-++.+++. .+.....-+ +... -....+|+|+-
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~--~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK--ESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS--CCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc--cccccccccccccCCCCceEEEe
Confidence 346788889872 22 2222222234899999999999988874 333332210 1110 01246899886
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
... -...++...+.+++||.+++.
T Consensus 104 ~~G------~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 104 CTG------AEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp CSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred ccC------CchhHHHHHHHhcCCCEEEEE
Confidence 543 245788999999999977763
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.62 E-value=0.093 Score=41.07 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred cCCceeeccCcC-Cc--cccCCCCCC-CeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCC------CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTP-GV--SHFPPGYKQ-DRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLP------FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~-G~--~~~~~~~~~-~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lp------f~~~~FD~Vis 204 (299)
.-++||=+|||. |. ..+... .+ .+|+++|.+++-++.+++. ..++...- +... .....||+|+-
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~-~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~---~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKL-RGAGRIIGVGSRPICVEAAKFYGATDILNYKN---GHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHT-TTCSCEEEECCCHHHHHHHHHHTCSEEECGGG---SCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEEcCCcchhhhhhhhhc-ccccccccccchhhhHHHHHhhCccccccccc---hhHHHHHHHHhhccCcceEEE
Confidence 456788889972 33 222222 34 4799999999988888764 22222211 1111 12345999886
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.-.- ...+++..+.|||+|.+++
T Consensus 103 ~~g~------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 103 AGGG------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEE
T ss_pred ccCC------HHHHHHHHHHHhcCCEEEE
Confidence 5432 2456888899999998766
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=84.68 E-value=0.18 Score=40.97 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=32.3
Q ss_pred cEEEeccCCCCCC-CCCCCCeeEEEecc---c-----------ccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 180 EYVVQDLNLNPKL-PFEDNSFDVITNVV---S-----------VDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 180 ~~~~~D~~~~~~l-pf~~~~FD~Vis~~---~-----------l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
+++.+|.. +-| .++++++|+|+..= . -+++....+.++++.|+|||||.+++.
T Consensus 6 ~i~~gDcl--e~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCF--DFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHH--HHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHH--HHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 35666651 112 25678888888541 0 011122456889999999999977653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.50 E-value=0.13 Score=39.93 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=55.0
Q ss_pred cCCceeeccCc-CCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCC-----CCCCCCeeEEEecc
Q 022305 137 YYSEVFPPSNT-PGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKL-----PFEDNSFDVITNVV 206 (299)
Q Consensus 137 ~~~~vLDiGcG-~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~l-----pf~~~~FD~Vis~~ 206 (299)
.-++||=+||| .|. ..+........++.+|.+++-++.+++. .+++..+- ++. .+.++.||+|+-.-
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~---~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT---QDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCC---cCHHHHHHHHcCCCCcEEEEcC
Confidence 34678888987 221 2222233345788899999988888764 23332221 111 12346799988543
Q ss_pred cccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 207 SVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 207 ~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
. -...+++..++++|+|.+++
T Consensus 105 G------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 105 G------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp C------CHHHHHHHHHTEEEEEEEEE
T ss_pred C------cHHHHHHHHhcccCceEEEE
Confidence 2 24567889999999998765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.81 E-value=0.071 Score=44.21 Aligned_cols=54 Identities=11% Similarity=-0.086 Sum_probs=42.9
Q ss_pred ccHHHHHHhhhcCCceeeccCcCCccccCCCCCCCeEEEEeCCHHHHHhcCCCC
Q 022305 126 IDDPAIAALTKYYSEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELKRNPVLT 179 (299)
Q Consensus 126 l~~~~~~~l~~~~~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~~a~~~~ 179 (299)
+.+.+++......+.|||.=||+|+...+....+.+.+|+|++++..+.+.+++
T Consensus 196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri 249 (279)
T d1eg2a_ 196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQL 249 (279)
T ss_dssp HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Confidence 334456666667788999999999977766666889999999999999887653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.78 E-value=0.14 Score=39.30 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=52.1
Q ss_pred hcCCceeeccCc-CCc--cccCCCCCCCeEEEEeCCHHHHHhcCCC--CcEEEeccCCCCCCC-----CCCCCeeEEEec
Q 022305 136 KYYSEVFPPSNT-PGV--SHFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLP-----FEDNSFDVITNV 205 (299)
Q Consensus 136 ~~~~~vLDiGcG-~G~--~~~~~~~~~~~v~gvD~S~~ml~~a~~~--~~~~~~D~~~~~~lp-----f~~~~FD~Vis~ 205 (299)
+..++||=+|+| .|. ..+. +..+.+|+++|.+++-++.+++. ..++..+- ++.. ...+.+|.|++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~---~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAKLELARKLGASLTVNARQ---EDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhHHHhhhccCccccccccc---hhHHHHHHHhhcCCccccccc
Confidence 345678888886 232 1122 22468999999999999888764 22332221 1110 112334455543
Q ss_pred ccccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 206 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 206 ~~l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.. ...+.+..+.|+|||.+++
T Consensus 102 ~~-------~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 102 VS-------NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp SC-------HHHHHHHHTTEEEEEEEEE
T ss_pred cc-------chHHHHHHHHhcCCcEEEE
Confidence 32 3567889999999998765
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.76 E-value=0.11 Score=41.00 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCceeeccCcCCccccCCC---CCCCeEEEEeCCHHHHHhcCCC-CcE-EEeccCCCCC-CCCCCCCeeEEEeccccccc
Q 022305 138 YSEVFPPSNTPGVSHFPPG---YKQDRIVGMGMNEEELKRNPVL-TEY-VVQDLNLNPK-LPFEDNSFDVITNVVSVDYL 211 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~~---~~~~~v~gvD~S~~ml~~a~~~-~~~-~~~D~~~~~~-lpf~~~~FD~Vis~~~l~~~ 211 (299)
.++||=-|.+.|.+.+... ..+++|+++.-|++-.+.+++. .+. +..+-...+. .....+.||+|+-+..-.
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~-- 109 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR-- 109 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT--
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch--
Confidence 4578888887777555432 3578999999988877776654 111 1111000011 123456899998765433
Q ss_pred CCHHHHHHHHHhhccCCcEEEEE
Q 022305 212 TKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 212 ~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
.+.+..++|+|||.++.-
T Consensus 110 -----~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 110 -----TLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp -----THHHHHHTEEEEEEEEEC
T ss_pred -----hHHHHHHHhCCCceEEEe
Confidence 368889999999988763
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=0.19 Score=38.85 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC------CCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp------f~~~~FD~Vis~~~ 207 (299)
-++||=.|+|+|.+.+.. ...+++|+++|.|++-++.+++. .+. ..|... +++. -..+.+|+|+....
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~-vi~~~~-~d~~~~v~~~t~g~g~d~v~d~~g 106 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQ-VINYRE-EDLVERLKEITGGKKVRVVYDSVG 106 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSE-EEETTT-SCHHHHHHHHTTTCCEEEEEECSC
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeE-EEECCC-CCHHHHHHHHhCCCCeEEEEeCcc
Confidence 357888887766644432 22568999999999988877664 222 223310 1111 13467999887654
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
-+ .+....+.|+|+|.+++
T Consensus 107 ~~-------~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 107 RD-------TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp GG-------GHHHHHHTEEEEEEEEE
T ss_pred HH-------HHHHHHHHHhcCCeeee
Confidence 33 45788999999998765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.45 E-value=0.42 Score=39.89 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=35.8
Q ss_pred cEEEeccCCCCCC-CCCCCCeeEEEec---cc-c----------cccCCHHHHHHHHHhhccCCcEEEEEecC
Q 022305 180 EYVVQDLNLNPKL-PFEDNSFDVITNV---VS-V----------DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 237 (299)
Q Consensus 180 ~~~~~D~~~~~~l-pf~~~~FD~Vis~---~~-l----------~~~~d~~~~l~ei~rvLkpGG~lii~~~~ 237 (299)
+.+.+|.- +-| .++++++|+|+.. ++ . +|+....+.+++++|+|||+|.+++....
T Consensus 14 ~l~~GD~l--e~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 14 SMYIGDSL--ELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEESCHH--HHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEehhHH--HHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 45666651 112 2567888888854 11 0 12223567899999999999988886544
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=81.02 E-value=0.15 Score=42.59 Aligned_cols=70 Identities=11% Similarity=-0.072 Sum_probs=48.1
Q ss_pred CceeeccCcCCccccCCCCCCCeEEEEeCCHHHHH-------hcC----------CCCcEEEeccCCCCCCCCCCCCeeE
Q 022305 139 SEVFPPSNTPGVSHFPPGYKQDRIVGMGMNEEELK-------RNP----------VLTEYVVQDLNLNPKLPFEDNSFDV 201 (299)
Q Consensus 139 ~~vLDiGcG~G~~~~~~~~~~~~v~gvD~S~~ml~-------~a~----------~~~~~~~~D~~~~~~lpf~~~~FD~ 201 (299)
.+|||.-||.|...+.....+++|++++-|+.+.. ++. ++++++.+|.. +-+.-.+++||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~--~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL--TALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH--HHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH--HHHhccCCCCCE
Confidence 48999999999866655556899999999987643 221 13678888862 223333567999
Q ss_pred EEecccccc
Q 022305 202 ITNVVSVDY 210 (299)
Q Consensus 202 Vis~~~l~~ 210 (299)
|+.-=.+.+
T Consensus 168 IYlDPMFp~ 176 (250)
T d2oyra1 168 VYLDPMFPH 176 (250)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 996544443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.97 E-value=0.38 Score=37.08 Aligned_cols=87 Identities=25% Similarity=0.245 Sum_probs=54.2
Q ss_pred CCceeeccCcCCccccCC---CCCCCeEEEEeCCHHHHHhcCCC-CcEEEeccCCCCCCC------CCCCCeeEEEeccc
Q 022305 138 YSEVFPPSNTPGVSHFPP---GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNVVS 207 (299)
Q Consensus 138 ~~~vLDiGcG~G~~~~~~---~~~~~~v~gvD~S~~ml~~a~~~-~~~~~~D~~~~~~lp------f~~~~FD~Vis~~~ 207 (299)
-++||=.|..+|.+.+.. ...++++++++-+++-++.+++. .+.+ .|... +++. .....||+|+....
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~v-i~~~~-~~~~~~v~~~t~~~g~d~v~d~~g 103 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV-GDSRS-VDFADEILELTDGYGVDVVLNSLA 103 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE-EETTC-STHHHHHHHHTTTCCEEEEEECCC
T ss_pred CCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccccc-ccCCc-cCHHHHHHHHhCCCCEEEEEeccc
Confidence 356777664334433322 22468999999888878877764 3332 23210 1211 13467999998654
Q ss_pred ccccCCHHHHHHHHHhhccCCcEEEE
Q 022305 208 VDYLTKPIEVFKEMCQVLKPGGLAIV 233 (299)
Q Consensus 208 l~~~~d~~~~l~ei~rvLkpGG~lii 233 (299)
.+.++++.++|||+|+++.
T Consensus 104 -------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 104 -------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp -------THHHHHHHHTEEEEEEEEE
T ss_pred -------chHHHHHHHHhcCCCEEEE
Confidence 2467888999999998776
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.53 E-value=0.23 Score=38.09 Aligned_cols=89 Identities=10% Similarity=0.166 Sum_probs=55.9
Q ss_pred cCCceeeccCcCCcccc----CCCCCCCeEEEEeCCHHHHHhcCCC-Cc-EEEeccCCCCCCC------CCCCCeeEEEe
Q 022305 137 YYSEVFPPSNTPGVSHF----PPGYKQDRIVGMGMNEEELKRNPVL-TE-YVVQDLNLNPKLP------FEDNSFDVITN 204 (299)
Q Consensus 137 ~~~~vLDiGcG~G~~~~----~~~~~~~~v~gvD~S~~ml~~a~~~-~~-~~~~D~~~~~~lp------f~~~~FD~Vis 204 (299)
..++||=+||+.|.+.+ .......+|+++|.+++-++.+++. .+ ++..+- ++.. ...+.||+|+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASM---QDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCC---cCHHHHHHHHhhcccchhhhc
Confidence 44678999976454332 2233447999999999888877763 22 222221 1110 12356999986
Q ss_pred cccccccCCHHHHHHHHHhhccCCcEEEEE
Q 022305 205 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 234 (299)
Q Consensus 205 ~~~l~~~~d~~~~l~ei~rvLkpGG~lii~ 234 (299)
... -...++...+.|+|||.+++-
T Consensus 104 ~~g------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 104 LNN------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCC------CHHHHTTGGGGEEEEEEEEEC
T ss_pred ccc------cchHHHhhhhhcccCCEEEEe
Confidence 542 345667789999999987653
|