Citrus Sinensis ID: 022332

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHccccccccccEEEEEEEcccEEEEEEcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEcccHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccEEccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
metilsspsispflnpkpsssktlfspslhaQQQRQSSlfctknitcslkkhnpqllnpslqvprsWFAHAQQGLAALALSLALsfspllytngnalasefdvltegppkdsylvddagviSKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWypsveegnnKGIVVLVTSqkegavtggpaFVKAVGEEVLDatisenlpvlatdekYNEAVYSTAKRLVAAIdglpdtggpkfnenkresnfktkeeteekrgqFSLVVGGLLVIAFVVPMAQYYAYVSRK
Flexible Loop (DISEMBL)
metilsspsispflnpkpSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFitvrkltskaDAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDAtisenlpvlatdEKYNEAVYSTAKRLVAAIdglpdtggpkfnenkresnfktkeeteekrgqfslVVGGLLVIAFVVPMAQYYAYVSRK
Low Complexity Region (SEG)
METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGlaalalslalsfspllYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK
Disordered region (IsUnstruct)
**************************************LFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDG*****************************QFSLVVGGLLVIAFVVPMAQYYAYV***
Disordered Region (DISOPRED)
******************************************************************WFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPK*******************RGQFSLVVGGLLVIAFVVPMAQYYAYVSRK
Disordered Region (DISEMBL)
METILSSPSISPFL***********************SLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESN***********GQFSLVVGGLLVIAFVVPMAQYYAYVSRK
Disordered Region (DISPRO)
************************F*PSL*******SSLFCTKNITCSLKKH*PQLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNEN****NFKTK****EKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q9ZVL6	285	UPF0603 protein At1g54780	yes	no	0.946	0.992	0.707	1e-109
Q6ATY4	299	UPF0603 protein Os05g0401	yes	no	0.842	0.842	0.718	1e-101
A2Y4G9	299	UPF0603 protein OsI_01921	N/A	no	0.842	0.842	0.718	1e-101

>sp|Q9ZVL6|U603_ARATH UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/301 (70%), Positives = 245/301 (81%), Gaps = 18/301 (5%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPS 60
           MET+LS  ++SP LNPKP S        LH  +    SL  +K  T S  KH    L+  
Sbjct: 1   METLLSPRALSPPLNPKPLS--------LHQTKPTSHSLSLSKPTTFSGPKH----LSTR 48

Query: 61  LQVP--RSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDA 118
              P  R+W   A+QGLAALALSL L+FSP+    G ALASEF++L +GPPK++Y+VDDA
Sbjct: 49  FTKPESRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDA 104

Query: 119 GVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNN 178
           GV+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKADAFEYADQVLEKWYPS+EEGNN
Sbjct: 105 GVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNN 164

Query: 179 KGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVA 238
           KGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLPVLATDEKYNEAVYS+AKRLVA
Sbjct: 165 KGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVA 224

Query: 239 AIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSR 298
           AIDG PD GGP   ++KRESNFKTKEET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVSR
Sbjct: 225 AIDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSR 284

Query: 299 K 299
           K
Sbjct: 285 K 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ATY4|U603_ORYSJ UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/263 (71%), Positives = 219/263 (83%), Gaps = 11/263 (4%)

Query: 45  ITCSLKKHNP--------QLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNA 96
           ++C+L++  P        +          SW    Q GLAA ALSLA+S   +      A
Sbjct: 40  VSCALRRQQPPPQAVAAWRGDGGRGGGVGSWATFLQHGLAAAALSLAIS---MAPAPAPA 96

Query: 97  LASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKA 156
           +ASEFDVL  GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLTSKA
Sbjct: 97  VASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKA 156

Query: 157 DAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENL 216
           DAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+T+SENL
Sbjct: 157 DAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENL 216

Query: 217 PVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLV 276
           PVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +NKRESNFKTKEETEEKRGQF+LV
Sbjct: 217 PVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLV 276

Query: 277 VGGLLVIAFVVPMAQYYAYVSRK 299
           VGGLLVIAFVVPMAQYYAY+S+K
Sbjct: 277 VGGLLVIAFVVPMAQYYAYISKK 299

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y4G9|U603_ORYSI UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/263 (71%), Positives = 219/263 (83%), Gaps = 11/263 (4%)

Query: 45  ITCSLKKHNP--------QLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNA 96
           ++C+L++  P        +          SW    Q GLAA ALSLA+S   +      A
Sbjct: 40  VSCALRRQQPPPQAVAAWRGDGGRGGGVGSWATFLQHGLAAAALSLAIS---MAPAPAPA 96

Query: 97  LASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKA 156
           +ASEFDVL  GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLTSKA
Sbjct: 97  VASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKA 156

Query: 157 DAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENL 216
           DAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+T+SENL
Sbjct: 157 DAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENL 216

Query: 217 PVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLV 276
           PVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +NKRESNFKTKEETEEKRGQF+LV
Sbjct: 217 PVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLV 276

Query: 277 VGGLLVIAFVVPMAQYYAYVSRK 299
           VGGLLVIAFVVPMAQYYAY+S+K
Sbjct: 277 VGGLLVIAFVVPMAQYYAYISKK 299

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
449442857	297	PREDICTED: UPF0603 protein At1g54780, ch	0.986	0.993	0.747	1e-126
224131454	292	predicted protein [Populus trichocarpa]	0.973	0.996	0.796	1e-125
356576763	293	PREDICTED: UPF0603 protein At1g54780, ch	0.979	1.0	0.779	1e-122
359806324	293	uncharacterized protein LOC100813027 [Gl	0.979	1.0	0.775	1e-122
225451038	295	PREDICTED: UPF0603 protein At1g54780, ch	0.986	1.0	0.769	1e-120
255542548	292	conserved hypothetical protein [Ricinus	0.933	0.955	0.807	1e-120
224125350	292	predicted protein [Populus trichocarpa]	0.973	0.996	0.796	1e-119
357441569	289	hypothetical protein MTR_1g082420 [Medic	0.963	0.996	0.72	1e-110
388504094	298	unknown [Lotus japonicus]	0.869	0.872	0.782	1e-109
297848060	285	thylakoid lumen 18.3 kDa protein [Arabid	0.946	0.992	0.707	1e-108

>gi|449442857|ref|XP_004139197.1| PREDICTED: UPF0603 protein At1g54780, chloroplastic-like [Cucumis sativus] gi|449482885|ref|XP_004156432.1| PREDICTED: UPF0603 protein At1g54780, chloroplastic-like [Cucumis sativus]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/301 (74%), Positives = 266/301 (88%), Gaps = 6/301 (1%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSL-HAQQQRQSSLFCTKNITCSLKKHNP-QLLN 58
           METILS  S+SP LNPKPSSSK   +PSL H+ Q R +    +K I+ SLK  +P + L 
Sbjct: 1   METILSPYSLSPILNPKPSSSK---NPSLYHSTQPRSNLASLSKPISLSLKTPSPPKSLR 57

Query: 59  PSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDA 118
            SL  P +WF+H Q GLAA+A+SLAL+FSPLL    NALASEFDVL++GPPK+++LVDDA
Sbjct: 58  SSLPFPSTWFSHLQHGLAAVAISLALNFSPLL-AGHNALASEFDVLSDGPPKETHLVDDA 116

Query: 119 GVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNN 178
           GV+S+VTKSDLK+LL+DLE RKNFHI+F+TVRKLTSKADAFEYADQVLE+WYP+VE+GNN
Sbjct: 117 GVLSRVTKSDLKRLLTDLEMRKNFHIDFVTVRKLTSKADAFEYADQVLERWYPTVEDGNN 176

Query: 179 KGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVA 238
           KGIVVLVTSQKEGA+TGGPAF++AVGE +LDAT++ENLPVLATDEKYNEA+YS+AKRLVA
Sbjct: 177 KGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVA 236

Query: 239 AIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSR 298
           AIDGLPDTGGP F +NKRESNFKT+EETEEKRGQF+LVVGGLLVIAF+VPMAQYYAY+S+
Sbjct: 237 AIDGLPDTGGPSFKDNKRESNFKTREETEEKRGQFTLVVGGLLVIAFIVPMAQYYAYISK 296

Query: 299 K 299
           K
Sbjct: 297 K 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131454|ref|XP_002328543.1| predicted protein [Populus trichocarpa] gi|222838258|gb|EEE76623.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/300 (79%), Positives = 266/300 (88%), Gaps = 9/300 (3%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSL-FCTKNITCSLKKHNPQLLNP 59
           MET+LSS ++SP LNPKPSSSK+   PSL   Q R  SL F  K IT SLK+H  +    
Sbjct: 1   METLLSSHTLSPLLNPKPSSSKSHLLPSL---QTRPDSLSFIPKTITSSLKRHTFE---- 53

Query: 60  SLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAG 119
           SL VP SWF  AQQGLAALALSLAL+FSPLLYT GNA ASEFDVL EGPPK+SY+ DDAG
Sbjct: 54  SLSVPNSWFNRAQQGLAALALSLALNFSPLLYT-GNAQASEFDVLYEGPPKESYIFDDAG 112

Query: 120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNK 179
           V+S+VTKSDLKQLLSDLESRKNF INF+TVRKLTSKADAFEYADQVLEKWYPS+E+GNNK
Sbjct: 113 VLSRVTKSDLKQLLSDLESRKNFKINFVTVRKLTSKADAFEYADQVLEKWYPSIEDGNNK 172

Query: 180 GIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAA 239
           GIVVLVTSQKEGA+TGGPAF++AVGE VLDAT+SENLPVLAT+EKYNEA+YS+AKRLVAA
Sbjct: 173 GIVVLVTSQKEGAITGGPAFIQAVGENVLDATVSENLPVLATEEKYNEAIYSSAKRLVAA 232

Query: 240 IDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           IDGLPD GGP+ NENKRESNFK++EET+EKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 233 IDGLPDPGGPRANENKRESNFKSREETDEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576763|ref|XP_003556499.1| PREDICTED: UPF0603 protein At1g54780, chloroplastic-like [Glycine max]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/299 (77%), Positives = 260/299 (86%), Gaps = 6/299 (2%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPS 60
           M TI    S+SP LN KPS S+ L +PS    Q + +SLFC+K I  SL+K+  Q L+P 
Sbjct: 1   MGTIFPPHSLSPLLNIKPSPSRILLAPS---PQPKSNSLFCSKPIVSSLRKN--QTLSPK 55

Query: 61  LQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGV 120
                SW AHAQQGLAALA+SLAL+FSP+L+ NGNALASEFDVL EGPPKDSY+ DDAGV
Sbjct: 56  PSSGTSWLAHAQQGLAALAISLALNFSPVLF-NGNALASEFDVLNEGPPKDSYVFDDAGV 114

Query: 121 ISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKG 180
           +S+VT+SDLKQLLSDLESRKNF INFITVRKLTSKADAFEYADQVLE+WYPSVEEGN KG
Sbjct: 115 LSRVTRSDLKQLLSDLESRKNFRINFITVRKLTSKADAFEYADQVLERWYPSVEEGNKKG 174

Query: 181 IVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAI 240
           IVVLVTSQKEGAVTGGPAFV+AVGE++LDAT+SENLPVLATDEKYNEA++STAKRL AAI
Sbjct: 175 IVVLVTSQKEGAVTGGPAFVEAVGEKILDATVSENLPVLATDEKYNEAIFSTAKRLAAAI 234

Query: 241 DGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           DGLPD GGP   +NKRESNFKTKEETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 235 DGLPDPGGPTVKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806324|ref|NP_001241481.1| uncharacterized protein LOC100813027 [Glycine max] gi|255647009|gb|ACU23973.1| unknown [Glycine max]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/299 (77%), Positives = 259/299 (86%), Gaps = 6/299 (2%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPS 60
           M TI    S+SP LN KPS S+ L +P     Q + +SLFC+K I  SL+K+  Q  +P 
Sbjct: 1   MGTIFPPHSLSPLLNIKPSPSRILLAP---CPQPKSNSLFCSKPIVSSLRKN--QTSSPK 55

Query: 61  LQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGV 120
                SW AHAQQGLAALA+SLAL+FSP+L+ NGNALASEFDVL EGPPKDSY+ DDAGV
Sbjct: 56  PSSGTSWLAHAQQGLAALAISLALNFSPVLF-NGNALASEFDVLNEGPPKDSYVFDDAGV 114

Query: 121 ISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKG 180
           +S+VT+SDLKQLLSDLESRKNF INFITVRKLTSKADAFEYADQVLE+WYPSVEEGNNKG
Sbjct: 115 LSRVTRSDLKQLLSDLESRKNFRINFITVRKLTSKADAFEYADQVLERWYPSVEEGNNKG 174

Query: 181 IVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAI 240
           IVVLVTSQKEGAVTGGPAFV+AVGE++LDAT+SENLPVLATDEKYNEA++STAKRL AAI
Sbjct: 175 IVVLVTSQKEGAVTGGPAFVEAVGEKILDATVSENLPVLATDEKYNEAIFSTAKRLAAAI 234

Query: 241 DGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           DGLPD GGP   +NKRESNFKTKEETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 235 DGLPDPGGPTVKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451038|ref|XP_002284939.1| PREDICTED: UPF0603 protein At1g54780, chloroplastic [Vitis vinifera] gi|296088289|emb|CBI36734.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 259/299 (86%), Gaps = 4/299 (1%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPS 60
           METIL  P  SP  NPKPSSSK LFSPS+  Q +  S    TK IT +LKK   Q   P 
Sbjct: 1   METILY-PHSSPLFNPKPSSSKALFSPSI--QPKSNSLSLITKPITSNLKKQPSQSAKPF 57

Query: 61  LQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGV 120
           L +P+SWF+HA  GLAALALSLAL+F PLL TN +ALASEFDVL +GPP++SY+VDDAGV
Sbjct: 58  LSLPKSWFSHAHHGLAALALSLALNFCPLLPTN-SALASEFDVLNDGPPQESYVVDDAGV 116

Query: 121 ISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKG 180
           +S+VTKSDLK+LLSDLESRKN  INFITVRKLTSKADAFEYADQVLE+WYP++EEG+NKG
Sbjct: 117 LSRVTKSDLKRLLSDLESRKNLRINFITVRKLTSKADAFEYADQVLERWYPTIEEGSNKG 176

Query: 181 IVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAI 240
           IVVLVTSQKEGAVTGGPAFV+AVG+ +LDAT+SENLPVLAT+EKYNEAV+S+AKRLVAAI
Sbjct: 177 IVVLVTSQKEGAVTGGPAFVQAVGDTILDATVSENLPVLATEEKYNEAVFSSAKRLVAAI 236

Query: 241 DGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           DGLPD GGP   +NKRESNFKT+EETEEKRGQF+ VVGGLLVIAFVVPMAQYYAYVSRK
Sbjct: 237 DGLPDAGGPSVKDNKRESNFKTREETEEKRGQFTFVVGGLLVIAFVVPMAQYYAYVSRK 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542548|ref|XP_002512337.1| conserved hypothetical protein [Ricinus communis] gi|223548298|gb|EEF49789.1| conserved hypothetical protein [Ricinus communis]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/286 (80%), Positives = 253/286 (88%), Gaps = 7/286 (2%)

Query: 14  LNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQ 73
           +NPKP S KT   PSL   Q R +SL  +K ITC+LK    Q   PSL V +SW +HAQQ
Sbjct: 14  VNPKPYSPKTHLPPSL---QSRPNSLALSKTITCNLKN---QTSKPSLPVSKSWVSHAQQ 67

Query: 74  GLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLL 133
           GLAALALSLAL+FSPLLY  GNALASEFDV+ EGPPKDSY+VDDAGV+SKVTKSDLKQLL
Sbjct: 68  GLAALALSLALNFSPLLY-GGNALASEFDVINEGPPKDSYVVDDAGVLSKVTKSDLKQLL 126

Query: 134 SDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAV 193
           SDLE+RKN  INFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVL+TSQKEGAV
Sbjct: 127 SDLEARKNLKINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLITSQKEGAV 186

Query: 194 TGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNE 253
           TGGPAF++AVGE VLD+T+SENLPVLAT+EKYNEAV+S+AKRLVAAIDGLPD GGP   +
Sbjct: 187 TGGPAFIEAVGETVLDSTVSENLPVLATEEKYNEAVFSSAKRLVAAIDGLPDPGGPLLKD 246

Query: 254 NKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           NKRESNFKTKEETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 247 NKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125350|ref|XP_002319564.1| predicted protein [Populus trichocarpa] gi|222857940|gb|EEE95487.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/300 (79%), Positives = 266/300 (88%), Gaps = 9/300 (3%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSL-FCTKNITCSLKKHNPQLLNP 59
           MET+LSS S+SP LN KPSSSK+   PSL   Q R +SL F  K+IT SLK+H  Q    
Sbjct: 1   METLLSSHSLSPLLNSKPSSSKSHLLPSL---QTRSNSLSFTHKSITSSLKRHTSQ---- 53

Query: 60  SLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAG 119
           SL VP SWF++AQQGLAALAL+LAL+FSPLLY  GNA ASEFDVL EGPPK+SY+ DDAG
Sbjct: 54  SLSVPNSWFSYAQQGLAALALALALNFSPLLYI-GNAQASEFDVLNEGPPKESYIFDDAG 112

Query: 120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNK 179
           V+S+VTKSDLKQLLSDLESRKNF INFITVRKLTSKADAFEYADQVLEKWYP+VEEG+NK
Sbjct: 113 VLSRVTKSDLKQLLSDLESRKNFKINFITVRKLTSKADAFEYADQVLEKWYPTVEEGSNK 172

Query: 180 GIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAA 239
           GIVVLVTSQKEGA+TGGPAF++AVGE VLD+T+SENLPVLAT+EKYNEA+YS+AKRLVAA
Sbjct: 173 GIVVLVTSQKEGAITGGPAFIQAVGETVLDSTVSENLPVLATEEKYNEAIYSSAKRLVAA 232

Query: 240 IDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           IDGLPD GGP   ENKRESNFK+KEETEEKRGQF+LVVGGLLVIAFVVPMAQYYAYVS+K
Sbjct: 233 IDGLPDPGGPTTKENKRESNFKSKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441569|ref|XP_003591062.1| hypothetical protein MTR_1g082420 [Medicago truncatula] gi|355480110|gb|AES61313.1| hypothetical protein MTR_1g082420 [Medicago truncatula]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/300 (72%), Positives = 249/300 (83%), Gaps = 12/300 (4%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKK-HNPQLLNP 59
           M T+    S+SP LN K S       PSL   Q + +SL   K I  +LKK     L  P
Sbjct: 1   MTTLFPPNSLSPLLNLKSS-------PSL---QPKSTSLISYKPIVSNLKKTQTLSLKPP 50

Query: 60  SLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAG 119
           +L    +   HAQQGLAALA++LAL+FSPLL + GNA ASEFDV+ E PPK++Y+VDDAG
Sbjct: 51  TLPSCTTLLTHAQQGLAALAITLALNFSPLLLS-GNAFASEFDVINERPPKEAYVVDDAG 109

Query: 120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNK 179
           V+S+VTKSDLK+LL+DLESRKNFHINFIT+RKLTSKADAFE+ADQ+LE+WYPSVEEGN+K
Sbjct: 110 VLSRVTKSDLKRLLADLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDK 169

Query: 180 GIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAA 239
           G+VVLVTSQKEGAVTGGPAFV+AVGE +LDAT+SENLPVLATDEKYNEA+YSTAKRLVAA
Sbjct: 170 GVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPVLATDEKYNEAIYSTAKRLVAA 229

Query: 240 IDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
           IDGLPD GGP   ++KRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPM QYYAYV++K
Sbjct: 230 IDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504094|gb|AFK40113.1| unknown [Lotus japonicus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/262 (78%), Positives = 234/262 (89%), Gaps = 2/262 (0%)

Query: 39  LFCTKNITCSLKKHNPQLLNPSLQVP-RSWFAHAQQGLAALALSLALSFSPLLYTNGNAL 97
           LFC++ I  SL+K+    L PSL     SW +HAQQGLAALA++LAL+FSP+ + +GNAL
Sbjct: 38  LFCSRPIISSLRKNQTLSLKPSLASSGTSWLSHAQQGLAALAITLALNFSPI-FLSGNAL 96

Query: 98  ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
           ASEFDVL E P KDSY+VDDAGV+S+VT+SDLK LLSDLESRK FHINFITVRKLTSKAD
Sbjct: 97  ASEFDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKAD 156

Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
           AFEYADQVLE+WYPSVEEGN+KGIVVLVTSQKEGAVTGGPAFV+AVG  +LDAT++ENLP
Sbjct: 157 AFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGGNILDATVAENLP 216

Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVV 277
           VLATDEKYNEAV STAKRLVAAIDGLPD GGP+  +NKRESNF+T+EETE+KRGQFSLVV
Sbjct: 217 VLATDEKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTEEETEQKRGQFSLVV 276

Query: 278 GGLLVIAFVVPMAQYYAYVSRK 299
           GGLLV+AFVVPM QYYAYV++K
Sbjct: 277 GGLLVVAFVVPMLQYYAYVAKK 298

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848060|ref|XP_002891911.1| thylakoid lumen 18.3 kDa protein [Arabidopsis lyrata subsp. lyrata] gi|297337753|gb|EFH68170.1| thylakoid lumen 18.3 kDa protein [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/301 (70%), Positives = 246/301 (81%), Gaps = 18/301 (5%)

Query: 1   METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPS 60
           MET+LS  ++SP LN KP+S+        H  +    SL  +K  T S  KH    L+  
Sbjct: 1   METLLSPRALSPPLNSKPTST--------HQTKPTSHSLSLSKPTTFSGPKH----LSTR 48

Query: 61  LQVP--RSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDA 118
              P  R+W   A+QGLAALALSL LSFSP+    G ALASEF++L +GPPKD+Y+VDDA
Sbjct: 49  FTKPESRNWLTDAKQGLAALALSLTLSFSPI----GTALASEFNILNDGPPKDTYVVDDA 104

Query: 119 GVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNN 178
           GV+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKADAFEYADQVLEKWYPS+EEGNN
Sbjct: 105 GVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNN 164

Query: 179 KGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVA 238
           KGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLPVLATDEKYNEAVYS+AKRLVA
Sbjct: 165 KGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVA 224

Query: 239 AIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSR 298
           AIDGLPD GGP   ++KRESNFKTK+ET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVSR
Sbjct: 225 AIDGLPDPGGPTVKDSKRESNFKTKQETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSR 284

Query: 299 K 299
           K
Sbjct: 285 K 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2199466	285	TLP18.3 "thylakoid lumen prote	0.949	0.996	0.666	2.5e-97
UNIPROTKB|P74145	249	sll1390 "Sll1390 protein" [Syn	0.648	0.779	0.309	4.9e-21
UNIPROTKB|Q3A9C2	260	CHY_2468 "Putative uncharacter	0.438	0.503	0.253	0.00025
TIGR_CMR|CHY_2468	260	CHY_2468 "conserved hypothetic	0.438	0.503	0.253	0.00025

TAIR|locus:2199466 TLP18.3 "thylakoid lumen protein 18.3" [Arabidopsis thaliana (taxid:3702)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 200/300 (66%), Positives = 231/300 (77%)

Query:     1 METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKH-NPQLLNP 59
             MET+LS  ++SP LNPKP S        LH  +    SL  +K  T S  KH + +   P
Sbjct:     1 METLLSPRALSPPLNPKPLS--------LHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKP 52

Query:    60 SLQVPRSWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLTEGPPKDSYLVDDAG 119
                  R+W   A+QG                   G ALASEF++L +GPPK++Y+VDDAG
Sbjct:    53 E---SRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAG 105

Query:   120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNK 179
             V+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKADAFEYADQVLEKWYPS+EEGNNK
Sbjct:   106 VLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNK 165

Query:   180 GIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAA 239
             GIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLPVLATDEKYNEAVYS+AKRLVAA
Sbjct:   166 GIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAA 225

Query:   240 IDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 299
             IDG PD GGP   ++KRESNFKTKEET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVSRK
Sbjct:   226 IDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0003993 "acid phosphatase activity" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|P74145 sll1390 "Sll1390 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 61/197 (30%), Positives = 95/197 (48%)

Query:   101 FDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFE 160
             +D+    P   ++LVD A  IS   ++ L   L  L         F+ +R+L   A    
Sbjct:    50 YDLPILSPGSKTFLVDQAEAISLANENRLNSDLKKLAQSSGQEARFVVIRRLDFDATIDG 109

Query:   161 YADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLA 220
             + + + E+WYP     +N+ ++VL T     A+  G      + +E++D+ + E L V  
Sbjct:   110 FVNDLFERWYPDEASQSNQTLLVLDTLTNSTALRRGETAESLLTDEMVDSLLRETLAVPL 169

Query:   221 TD-EKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGG 279
              D  KYN+A+    KRL A + G PD G P   E   E  F T EET++      +VV  
Sbjct:   170 KDGAKYNQALIEADKRLGAILAGQPDPGPPALEEISLEGTFTTAEETDDTSATVWVVV-- 227

Query:   280 LLVIAFVVPMAQYYAYV 296
             LL +A ++PM  Y+ YV
Sbjct:   228 LLALATLIPMVTYFWYV 244

GO:0030096 "plasma membrane-derived thylakoid photosystem II" evidence=IDA

UNIPROTKB|Q3A9C2 CHY_2468 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 114 (45.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 34/134 (25%), Positives = 62/134 (46%)

Query:   108 PPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLE 167
             P +D Y+ D AGV+S  T+ ++ ++   L ++    I  +TV  L       EYA +VL 
Sbjct:    28 PQQDIYVADYAGVLSPATREEILRVNRVLYAKTGAQIAVVTVNSLEGMRIE-EYALEVLR 86

Query:   168 KWYPSVEEGNNKGIVVLVT-SQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYN 226
             +W     E NN G+VVLV    ++  +  G     A+ +      + E +    ++  Y+
Sbjct:    87 QWGVGSSEKNN-GVVVLVAIKDRKARIEVGYGLEGAIPDGKAGRILREEMIPYFSNGDYD 145

Query:   227 EAVYSTAKRLVAAI 240
               +    +R+ A +
Sbjct:   146 RGILLGFRRIAAEV 159

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2468 CHY_2468 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 114 (45.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 34/134 (25%), Positives = 62/134 (46%)

Query:   108 PPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLE 167
             P +D Y+ D AGV+S  T+ ++ ++   L ++    I  +TV  L       EYA +VL 
Sbjct:    28 PQQDIYVADYAGVLSPATREEILRVNRVLYAKTGAQIAVVTVNSLEGMRIE-EYALEVLR 86

Query:   168 KWYPSVEEGNNKGIVVLVT-SQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYN 226
             +W     E NN G+VVLV    ++  +  G     A+ +      + E +    ++  Y+
Sbjct:    87 QWGVGSSEKNN-GVVVLVAIKDRKARIEVGYGLEGAIPDGKAGRILREEMIPYFSNGDYD 145

Query:   227 EAVYSTAKRLVAAI 240
               +    +R+ A +
Sbjct:   146 RGILLGFRRIAAEV 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       283   0.00084  115 3  11 23  0.44    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  186 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.56u 0.08s 26.64t   Elapsed:  00:00:02
  Total cpu time:  26.56u 0.08s 26.64t   Elapsed:  00:00:02
  Start:  Thu May  9 16:33:34 2013   End:  Thu May  9 16:33:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ATY4	U603_ORYSJ	No assigned EC number	0.7186	0.8428	0.8428	yes	no
A2Y4G9	U603_ORYSI	No assigned EC number	0.7186	0.8428	0.8428	N/A	no
Q9ZVL6	U603_ARATH	No assigned EC number	0.7076	0.9464	0.9929	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_700066	hypothetical protein (292 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00070463	hypothetical protein (187 aa)			•						0.424
	estExt_Genewise1_v1.C_LG_X2901	hypothetical protein (169 aa)			•						0.420
	gw1.164.72.1	hypothetical protein (397 aa)			•						0.412
	fgenesh4_pm.C_LG_VI000258	hypothetical protein (443 aa)			•						0.405
	gw1.1296.12.1	hypothetical protein (51 aa)			•						0.400

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	6e-16
pfam04536	120	pfam04536, Repair_PSII, Repair protein	1e-10

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 75.5 bits (186), Expect = 6e-16
 Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 41/239 (17%)

Query: 76  AALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSD 135
               L  AL+ +PLL+       +              + D  G +S   +  L+Q L+D
Sbjct: 8   LLALLLAALALAPLLFAEPIPAPTLS----------QRVTDLTGTLSAAERGALEQQLAD 57

Query: 136 LESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLV---------- 185
           LE +    I  +TV     +    +YA ++ +KW    +  ++ G+++LV          
Sbjct: 58  LEQKTGAQIAVVTVPSTGGE-TIEQYATRLFDKWKLGDKAQDD-GVLLLVAMNDRRVRIE 115

Query: 186 -TSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLP 244
                EG +T   A    +        I E +     D  Y   + +   RLVA + G P
Sbjct: 116 VGYGLEGVLT--DAQAGRI--------IRETIAPAFRDGNYAGGLEAGIDRLVALLAGEP 165

Query: 245 DTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFV-----VPMAQYYAYVSR 298
                +     +  +    E         + V   +L           PM     Y+ R
Sbjct: 166 LPSPARALREVQPESPFRSELV---VLIIAAVWVFILFGGATRAIISGPMFGRSLYLGR 221

Length = 271

>gnl|CDD|203039 pfam04536, Repair_PSII, Repair protein

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNK 179
           ++S   ++ L+Q L+ LE +    I  +TV  L  + D  +YA  + + W     E +N 
Sbjct: 1   LLSAAERARLEQALAALEQKTGGEIVVVTVPSLDGE-DIEDYALDLFDAWGLGDTEDDN- 58

Query: 180 GIVVLV-TSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVA 238
           G+++LV  + ++  +  G      + +   D  I + +     +  Y E + +    + A
Sbjct: 59  GVLLLVALNDRKVRIEVGYGLEGRLPDAFWDEIIDDLIVPYFREGDYAEGIVAAVDAIGA 118

Query: 239 AI 240
            +
Sbjct: 119 VL 120

In plants, this domain plays a role in the photosystem II (PSII) repair cycle. It may be involved in the regulation of synthesis/degradation of the D1 protein of the PSII core and in the assembly of PSII monomers into dimers in the grana stacks. Its function in other organisms is unknown. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
COG1512	271	Beta-propeller domains of methanol dehydrogenase t	100.0
PF04536	119	TPM: TLP18.3, Psb32 and MOLO-1 founding proteins o	99.89
COG3762	213	Predicted membrane protein [Function unknown]	96.65

>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

Probab=100.00  E-value=8.1e-32  Score=250.02  Aligned_cols=139  Identities=23%  Similarity=0.392  Sum_probs=124.9

Q ss_pred             CCCCCCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEE
Q 022332          107 GPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVT  186 (299)
Q Consensus       107 ~~~~~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa  186 (299)
                      .|...++|+|.+++||.+|++.|+++|++|+++++.||+||||+++ +|++||+||.++|++|++|+ |+.||||||||+
T Consensus        29 ~p~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt-~g~~IE~ya~rlfd~W~lG~-k~~~dGvLLlVa  106 (271)
T COG1512          29 APTLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPST-GGETIEQYATRLFDKWKLGD-KAQDDGVLLLVA  106 (271)
T ss_pred             CCcccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCC-CCCCHHHHHHHHHHhcCCCc-cccCCCEEEEEE
Confidence            3445679999999999999999999999999999999999999999 79999999999999999998 999999999999


Q ss_pred             ecC-cceEeCCcchhhhhH----HHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHccCCCCCCCcc
Q 022332          187 SQK-EGAVTGGPAFVKAVG----EEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKF  251 (299)
Q Consensus       187 ~~d-eg~I~~G~~l~d~l~----~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l~g~~dpg~P~~  251 (299)
                      |+| ..+|.+|.+++..++    .+||+++|   .|+|+ +|||++|+..++++|.+++.++++|.|+..
T Consensus       107 ~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i---~P~fr-~gny~~gi~~~id~l~~~l~g~~~~~~~~~  172 (271)
T COG1512         107 MNDRRVRIEVGYGLEGVLTDAQAGRIIRETI---APAFR-DGNYAGGLEAGIDRLVALLAGEPLPSPARA  172 (271)
T ss_pred             cCCCeEEEEEecCcccccChHHHHHHHHhhh---Ccccc-cCcHHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence            998 778888877665555    46776666   59997 999999999999999999999999887754

>PF04536 TPM: TLP18

Probab=99.89  E-value=1.9e-22  Score=163.76  Aligned_cols=118  Identities=23%  Similarity=0.437  Sum_probs=99.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEEecC-cceEeCCcc
Q 022332          120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQK-EGAVTGGPA  198 (299)
Q Consensus       120 vLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~d-eg~I~~G~~  198 (299)
                      +||++++++|++.+++++++|+.+|+|||++++ +|.++++||.++|++|++|. ++++|||||+|++++ +..|.+|++
T Consensus         1 iLs~~~~~~l~~~l~~~~~~t~~~i~Vvtv~~~-~~~~~~~~A~~~~~~~~~g~-~~~~~gvlilv~~~~r~~~i~~g~~   78 (119)
T PF04536_consen    1 ILSQEERERLNQALAKLEKKTGVQIVVVTVPSL-PGQDIEDYAQQLFERWGLGD-GECNNGVLILVSKDDRKVRIETGGG   78 (119)
T ss_dssp             -S-HHHHHHHHHHHHHHHHHC--EEEEEEESB--TTS-HHHHHHHHHHHHSTTC-CCTSSEEEEEEETTTTEEEEEE-CT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCC-CCCCHHHHHHHHHHHhCCCC-ccccCcEEEEEEcCCCEEEEEECCc
Confidence            699999999999999999999999999999999 78999999999999999998 889999999999987 778888988


Q ss_pred             hhhhhHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHH
Q 022332          199 FVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAI  240 (299)
Q Consensus       199 l~d~l~~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l  240 (299)
                      +.+.+++..++++++++.|+|+ +|||++|+..+++.+.++|
T Consensus        79 ~~~~l~~~~~~~i~~~~~~~~~-~~~~~~g~~~~v~~i~~~L  119 (119)
T PF04536_consen   79 LEERLTDSECESIIDEMVPYFK-DGDYAEGIEAAVDAIAEVL  119 (119)
T ss_dssp             CCCCH-HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhC
Confidence            8777777777776666679997 8999999999999998875

3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.

>COG3762 Predicted membrane protein [Function unknown]

Probab=96.65  E-value=0.0027  Score=56.75  Aligned_cols=89  Identities=10%  Similarity=0.040  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHHhCCCCccCCcceEEEEEEecC-cceEeCCcchhhhhHHHHHHHHHhcccccccccCCHHHHHHHHHH
Q 022332          156 ADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQK-EGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAK  234 (299)
Q Consensus       156 ~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~d-eg~I~~G~~l~d~l~~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd  234 (299)
                      .....-|.+.|..-|+-. ....+||||++++-+ ...+-.+.++.....+..++.+.+...-.|+ +|.|.+|+..+++
T Consensus       108 ~~~~~~Al~qFl~~gvh~-T~~rtGVLIfvs~aeh~veViAD~GI~a~V~~~~W~~ic~~ltag~~-~~~~adgfveAi~  185 (213)
T COG3762         108 QRAHARALQQFLELGVHN-TEARTGVLIFVSLAEHRVEVIADQGIHAYVGQAEWNAICDTLTAGFR-QGAAADGFVEAIG  185 (213)
T ss_pred             HHHHHHHHHHHHHhcccc-ccccceeEEeeHHHHHHHHHHhcccHHhhccHHHHHHHHHHHHHHHh-ccchhhHHHHHHH
Confidence            345556888899999886 788999999999987 4445555666677777777776665568896 8999999999999


Q ss_pred             HHHHHHccCCCC
Q 022332          235 RLVAAIDGLPDT  246 (299)
Q Consensus       235 ~I~~~l~g~~dp  246 (299)
                      ++.++|...-.|
T Consensus       186 qig~vLA~hfP~  197 (213)
T COG3762         186 QIGKVLAAHFPP  197 (213)
T ss_pred             HHHHHHHHhCCC
Confidence            999999876433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	299
3pvh_A	153	Structural And Functional Analysis Of Arabidopsis T		1e-72
3ptj_A	153	Structural And Functional Analysis Of Arabidopsis T		7e-72

>pdb|3PVH|A Chain A, Structural And Functional Analysis Of Arabidopsis Thaliana Thylakoid Lumen Protein Attlp18.3 Length = 153

Iteration: 1
 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 98  ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
           ASEF++L +GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKAD
Sbjct: 2   ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKAD 61
Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
           AFEYADQVLEKWYPS+EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLP
Sbjct: 62  AFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLP 121
Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTGGP 249
           VLATDEKYNEAVYS+AKRLVAAIDG PD GGP
Sbjct: 122 VLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP 153

>pdb|3PTJ|A Chain A, Structural And Functional Analysis Of Arabidopsis Thaliana Thylakoid Lumen Protein Attlp18.3 Length = 153

Iteration: 1
 Score =  267 bits (682), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 143/152 (94%)
Query: 98  ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
           ASEF++L +GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKAD
Sbjct: 2   ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKXRLNFITVRKLTSKAD 61
Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
           AFEYADQVLEKWYPS EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLP
Sbjct: 62  AFEYADQVLEKWYPSXEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLP 121
Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTGGP 249
           VLATDEKYNEAVYS+AKRLVAAIDG PD GGP
Sbjct: 122 VLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
3pvh_A	153	UPF0603 protein AT1G54780, chloroplastic; TAP doma	2e-41
2kw7_A	157	Conserved domain protein; structural genomics, nor	2e-23
2kpt_A	148	Putative secreted protein; methods development, al	1e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A Length = 153

 Score =  139 bits (353), Expect = 2e-41
 Identities = 126/152 (82%), Positives = 144/152 (94%)

Query: 98  ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
           ASEF++L +GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKAD
Sbjct: 2   ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKAD 61

Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
           AFEYADQVLEKWYPS+EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLP
Sbjct: 62  AFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLP 121

Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTGGP 249
           VLATDEKYNEAVYS+AKRLVAAIDG PD GGP
Sbjct: 122 VLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP 153

>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis} Length = 157

 Score = 93.0 bits (231), Expect = 2e-23
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 1/138 (0%)

Query: 108 PPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLE 167
                 + D+AG++S   +  +   L  + S        +T+  +       ++  ++  
Sbjct: 15  ADSTRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVTLPSIGDA-PLEDFTLKLAR 73

Query: 168 KWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNE 227
           +W    E+ NN  ++VLV  Q+      G      + + +L   I + +        Y E
Sbjct: 74  QWGVGNEKNNNGLLLVLVLDQRRVRFETGYGLEGYLPDGLLSRIIHDRMIPHFRSGNYAE 133

Query: 228 AVYSTAKRLVAAIDGLPD 245
            +      +   +DG  +
Sbjct: 134 GLSEGVLAVQQVLDGSLE 151

>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} Length = 148

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 99  SEFDVLTEGPPK-DSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
           +E  VL E P      + D  G IS    ++++  + D+++ +   I  + +       D
Sbjct: 1   TETYVLAESPEFYQDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSF-DGVD 59

Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
              +  Q L+        G N  I  L   +++  + GG  +  A     LDA  +    
Sbjct: 60  PETWTQQALQAN-----GGGNVLIYALAPEERQYGIQGGTQWTDA----ELDAANNAAFQ 110

Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTG 247
            L+ ++ +  +  + A+ + ++      + 
Sbjct: 111 ALSQED-WAGSALALAESVGSSSSSSSGSS 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 41/277 (14%), Positives = 74/277 (26%), Gaps = 80/277 (28%)

Query: 31  AQQQRQSSLFCTKNITCSLKKHN-PQLLNPSLQVPR-----------------SW-FAHA 71
             +QRQ S+     I    + +N  Q+      V R                        
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 72  QQG-----LAALA----------------LSLALSFSP-LLYTNGNALASEFDVLTEGPP 109
             G     +A                   L+L    SP  +      L  + D      P
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------P 211

Query: 110 KDSYLVDDAGVISKVTKSDLKQLLSDLESRKNF--------------HIN-F-------I 147
             +   D +  I K+    ++  L  L   K +                N F       +
Sbjct: 212 NWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 148 TVR--KLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEG-----AVTGGPAFV 200
           T R  ++T    A       L+    ++     K +++     +        +T  P  +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 201 KAVGEEVLD-ATISENLPVLATDEKYNEAVYSTAKRL 236
             + E + D     +N   +  D K    + S+   L
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVL 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
3pvh_A	153	UPF0603 protein AT1G54780, chloroplastic; TAP doma	100.0
2kw7_A	157	Conserved domain protein; structural genomics, nor	99.95
2kpt_A	148	Putative secreted protein; methods development, al	99.95

>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A

Probab=100.00  E-value=2.5e-37  Score=264.24  Aligned_cols=150  Identities=82%  Similarity=1.268  Sum_probs=141.6

Q ss_pred             ccccccCCCCCCCCCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCcc-C
Q 022332           98 ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEE-G  176 (299)
Q Consensus        98 as~~dvP~~~~~~~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~-~  176 (299)
                      |+++++|++++++..||+|+||+||++++++|+++|++|+++|+.||+||||+++++|+++++||.++|++|++|. + +
T Consensus         2 a~~~~~p~~~~~~~~~V~D~A~vLs~~~~~~l~~~l~~le~~t~~qi~Vvtv~~~~~g~~i~~~A~~l~~~wgiG~-~~~   80 (153)
T 3pvh_A            2 ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSI-EEG   80 (153)
T ss_dssp             HHHHHHHHTCCCTTTSEEETTCCSCHHHHHHHHHHHHHHHHHHCCEEEEEEESCCSSSCCHHHHHHHHHHHHSCSH-HHH
T ss_pred             CccccCCCCCCCCCcEEEeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCCCCCCCHHHHHHHHHHHhCCCC-cCC
Confidence            4478899887777889999999999999999999999999999999999999999438999999999999999997 7 8


Q ss_pred             CcceEEEEEEecCcceEeCCcchhhhhHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHHHHHccCCCCCCC
Q 022332          177 NNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATD-EKYNEAVYSTAKRLVAAIDGLPDTGGP  249 (299)
Q Consensus       177 ~nnGVLlLIa~~deg~I~~G~~l~d~l~~~Ii~~~~~e~~p~fkr~-gdY~~ai~~~vd~I~~~l~g~~dpg~P  249 (299)
                      +||||||||++++|++|++|.++.|+++++|++++.++++|+|+ + |||++|+.+++++|...+.|+++||||
T Consensus        81 ~~nGvLllva~~de~~i~~g~gi~d~~~~~ii~~~~~~i~p~fk-~~gdy~~gi~~~~~~i~~~l~g~~~p~pp  153 (153)
T 3pvh_A           81 NNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLA-TDEKYNEAVYSSAKRLVAAIDGQPDPGGP  153 (153)
T ss_dssp             TTEEEEEEETTTTEEEEEECHHHHHHHCHHHHHHHHHTHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCEEEEEEEeCCeEEEeCCccHHHHhhHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999999999999999777789997 7 999999999999999999999999998

>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}

Probab=99.95  E-value=4.8e-28  Score=207.02  Aligned_cols=142  Identities=16%  Similarity=0.272  Sum_probs=124.6

Q ss_pred             ccccCCCCCC-CCCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCc
Q 022332          100 EFDVLTEGPP-KDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNN  178 (299)
Q Consensus       100 ~~dvP~~~~~-~~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~n  178 (299)
                      +.++|+++.+ ...+|+|+|++||++++++|+++|++++++|+.||+|||++++ +|.++++||.++|++||+|. +++|
T Consensus         6 ~~~~p~~~~~~~~~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~~qi~Vv~v~~l-~g~~~~~~A~~~f~~wgig~-~~~~   83 (157)
T 2kw7_A            6 PEDVPNVQLADSTRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVTLPSI-GDAPLEDFTLKLARQWGVGN-EKNN   83 (157)
T ss_dssp             GGGSCCGGGTCTTTCEEECSSCSCHHHHHHHHHHHHHHHHHTCCEEEEEEESBC-TTCCHHHHHHHHHHHHSTTT-TSCT
T ss_pred             HhhCCCCCCCCCCceEEcccccCCHHHHHHHHHHHHHHHHhhCCeEEEEEEcCC-CCCCHHHHHHHHHHHhCCCC-CCCC
Confidence            5678865442 2569999999999999999999999999999999999999999 78999999999999999998 8999


Q ss_pred             ceEEEEEEecC-cceEeCCcchhhhhHHHHHHHHHh-cccccccccCCHHHHHHHHHHHHHHHHccCC
Q 022332          179 KGIVVLVTSQK-EGAVTGGPAFVKAVGEEVLDATIS-ENLPVLATDEKYNEAVYSTAKRLVAAIDGLP  244 (299)
Q Consensus       179 nGVLlLIa~~d-eg~I~~G~~l~d~l~~~Ii~~~~~-e~~p~fkr~gdY~~ai~~~vd~I~~~l~g~~  244 (299)
                      |||||+|++++ +.+|.+|.++...+++..++++++ .+.|+|+ +|||++|+..+++++..++.++.
T Consensus        84 nGvLl~va~~dr~v~I~~g~gl~~~l~d~~~~~I~~~~~~~~fr-~g~y~~gi~~~i~~i~~~l~~~~  150 (157)
T 2kw7_A           84 NGLLLVLVLDQRRVRFETGYGLEGYLPDGLLSRIIHDRMIPHFR-SGNYAEGLSEGVLAVQQVLDGSL  150 (157)
T ss_dssp             TEEEEEEETTTTEEEEEECSTTTTTCCHHHHHHHHHHTHHHHHH-HTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEEeCCCEEEEEECccHHhhCCHHHHHHHHHHHhHHHHh-cCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987 678999988877777666666552 2369997 89999999999999999998764

>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}

Probab=99.95  E-value=1e-27  Score=204.04  Aligned_cols=125  Identities=11%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             CCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEEecCc
Q 022332          111 DSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKE  190 (299)
Q Consensus       111 ~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~de  190 (299)
                      ..+|+|+||+||++++++|+++|++|++++|.||+||||+++ +|+++++||.++|++|| |     |||+||+|+++++
T Consensus        14 ~~~V~D~A~vLs~~~~~~L~~~l~~l~~~tg~qi~VvtV~sl-~g~~ie~yA~~l~~~wg-G-----~ngvLLlVa~~dR   86 (148)
T 2kpt_A           14 QDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSF-DGVDPETWTQQALQANG-G-----GNVLIYALAPEER   86 (148)
T ss_dssp             CCSEEESSSCSCHHHHHHHHHHHHHHHHHSCCEEEEEECSCC-TTTCHHHHHHHHHHHHT-C-----SSEEEEEEEGGGT
T ss_pred             CceeeeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEECCC-CCCCHHHHHHHHHHHhC-C-----CCcEEEEEEeCCC
Confidence            469999999999999999999999999999999999999999 89999999999999999 7     5899999999874


Q ss_pred             ceEeCCcc--hhhhhHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHccCCCCCC
Q 022332          191 GAVTGGPA--FVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGG  248 (299)
Q Consensus       191 g~I~~G~~--l~d~l~~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l~g~~dpg~  248 (299)
                      - |.+|.+  +.|+.+++|+++.    .|+|+ +|||++|+..++++|..++.|+++|+|
T Consensus        87 k-i~vg~Gl~ltDa~~~~I~~~~----~p~fk-~gdy~~g~~~~~~~i~~~l~ge~~~~~  140 (148)
T 2kpt_A           87 Q-YGIQGGTQWTDAELDAANNAA----FQALS-QEDWAGSALALAESVGSSSSSSSGSSS  140 (148)
T ss_dssp             E-EEEEECTTSCHHHHHHHHHHH----HHHHH-TTCHHHHHHHHHHHHHTTCCSCCCSCC
T ss_pred             E-EEeccCcccCHHHHHHHHHhc----cchhc-cCCHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            3 554544  5566666777666    39997 899999999999999999999988875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00