Citrus Sinensis ID: 022351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHcHHHHHHccccccccccccccccccccEEEEcccccEEEEccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHccccEEEEEEccHcccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEEEcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MATSSSSLFKLAREIGTAvsqkkgggwygphMAAATRAIADRMPLVDIILEVrdaripfssefdqlrnhhpfsssrRILVLnkmdlasptqFKEWITFfdqqncpsfgvnshnkdNVKEFLKFLQAHVRNLrksdydassdTVTVMLLGIPNVGKSALANSLHQIGRITAaekgklrhatvspqpgetkdiyslkiashpniyvldtpgilppeihdVEVCSKLAltgaigdsfvggKELAQYFLGILNFSDEYKKWAKFSInqinkpltlhhkadqssgsesgmiwkrqnptdhtqv
Flexible Loop (DISEMBL)
MATSSSSLFKLAREIGTavsqkkgggwygPHMAAATRAIADRMPLVDIILEVRDARIPFSsefdqlrnhhpfsssRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRksdydassDTVTVMLLGIPNVGKSALANSLHQIGRITaaekgklrhatvspqpgetKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKAdqssgsesgmiwkrqnptdhtqv
Low Complexity Region (SEG)
MATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV
Disordered region (IsUnstruct)
************REIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAA******************DIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLT****************************
Disordered Region (DISOPRED)
*************EIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH**************TVTVMLLGIPNVGKSALANSLHQIGR************TVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSES***WKRQNPTDH**V
Disordered Region (DISEMBL)
********FKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLH***********GMIWKRQ********
Disordered Region (DISPRO)
*****SSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESG******N*T*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q8R2R6	326	Mitochondrial GTPase 1 OS	yes	no	0.708	0.647	0.346	7e-27
B7GGD6	284	Ribosome biogenesis GTPas	yes	no	0.664	0.697	0.337	8e-27
A9JTX2	311	Mitochondrial GTPase 1 OS	yes	no	0.768	0.736	0.320	1e-26
A8FD69	282	Ribosome biogenesis GTPas	yes	no	0.697	0.737	0.323	2e-26
C5D8U8	283	Ribosome biogenesis GTPas	yes	no	0.731	0.770	0.306	4e-26
Q9BT17	334	Mitochondrial GTPase 1 OS	yes	no	0.694	0.619	0.349	5e-26
Q819W8	296	Ribosome biogenesis GTPas	yes	no	0.728	0.733	0.306	9e-26
D5DJL5	288	Ribosome biogenesis GTPas	yes	no	0.731	0.756	0.310	4e-25
Q65JP4	283	Ribosome biogenesis GTPas	yes	no	0.731	0.770	0.315	2e-24
Q4PS77	332	Mitochondrial GTPase 1 OS	yes	no	0.697	0.626	0.350	4e-24

>sp|Q8R2R6|MTG1_MOUSE Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 17/228 (7%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA   + +   +  VD ++EV DARIPFS     F +L    P      +LVLNK
Sbjct: 29  WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
           MDLA  T+ ++ +   +++   +    +  KD N+K+ +  +   +R   +  + A +  
Sbjct: 84  MDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPE 142

Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
             +M++G+PNVGKS+L NSL    R      GK   A V  +PG T+ + S +++   P 
Sbjct: 143 YCIMVVGVPNVGKSSLINSL----RRQHLRTGK--AARVGGEPGITRAVTSRIQVCERPL 196

Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
           +++LDTPG+L P I  VE   KLAL G + D  VG + +A Y L  LN
Sbjct: 197 VFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.
Mus musculus (taxid: 10090)

>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rbgA PE=3 SV=1

 Score =  121 bits (303), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 36/234 (15%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R + +++ L+DI+ E+ DARIP SS     D++  + P     RI++LNK
Sbjct: 8   WFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKP-----RIILLNK 62

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKS 134
            D+A P   K+W+ FF  Q   +  ++S +   VK+ +         KF +   + +++ 
Sbjct: 63  ADMADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRP 122

Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL 194
                   +  +++GIPNVGKS L N L           GK   A     PG TK    +
Sbjct: 123 R------AMRALIVGIPNVGKSTLINRLA----------GK-HIAKTGDTPGVTKAQQWI 165

Query: 195 KIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
           K+     + +LDTPGIL P+  D EV  KLA TGAI D+ +  +++A Y L  L
Sbjct: 166 KVGKE--LELLDTPGILWPKFEDEEVGYKLATTGAIKDTILNLQDVAVYALRFL 217

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

>sp|A9JTX2|MTG1_XENTR Mitochondrial GTPase 1 OS=Xenopus tropicalis GN=mtg1 PE=2 SV=1

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 126/240 (52%), Gaps = 11/240 (4%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
           W+  HMA   + +  ++  +D I+EV DARIP S      ++         +L+LNKMDL
Sbjct: 21  WFPGHMAKGLKQMKTKLKNLDCIVEVHDARIPLSGRNPIFQD--SLGMKPHLLILNKMDL 78

Query: 87  ASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
           A  TQ K  +    QQ   +       KD N+K  +  +   V   ++   + +++T  +
Sbjct: 79  ADLTQKKRILAQLKQQGVGNVIFTDCVKDQNIKHVVPVISELVGCSQRFHREENTET-CI 137

Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYV 204
           M++G+PNVGKS+L N+L ++       KGK   + V  +PG T+ + + ++++  P I++
Sbjct: 138 MVIGVPNVGKSSLINALRRM----HLRKGK--ASRVGAEPGITRSVLTKIQVSESPLIFL 191

Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
            DTPG+L P I  VE   KLAL G I D  VG   +A Y L ILN   +++    + + +
Sbjct: 192 FDTPGVLSPRIESVETGMKLALCGTILDHLVGEDIMADYLLYILNQQMQHRYVEHYGLEK 251

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Xenopus tropicalis (taxid: 8364)

>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032) GN=rbgA PE=3 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 33/241 (13%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R + +++ L+DI+ E+ DARIP SS     +++  + P     +I++LNK
Sbjct: 5   WFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKP-----KIMLLNK 59

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ 137
            D A P   KEW   F+QQ   S  +NS +   + + +       + + K  +D      
Sbjct: 60  ADKADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQII----TTSKEILKEKFDRMKAKG 115

Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
                +  +++GIPNVGKS L N L            K   A    +PG T     +K+ 
Sbjct: 116 VKPRAIRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVG 164

Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYK 255
               + +LDTPGIL P+  D +V  +LA+TGAI DS +  +++A Y L  L  N+ +  K
Sbjct: 165 KE--MELLDTPGILWPKFEDEKVGLRLAVTGAIKDSIINLQDVAVYGLRFLEENYPERLK 222

Query: 256 K 256
           K
Sbjct: 223 K 223

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) GN=rbgA PE=3 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 30/248 (12%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
           W+  HMA A R + +++ L+DI+ E+ DARIP SS    +  H    +  RI++LNK D+
Sbjct: 7   WFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMI--HEILGNKPRIVLLNKADM 64

Query: 87  ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL---------KFLQAHVRNLRKSDYD 137
           A  T  ++WI +F++Q   +  +++     +++ +         KF +   + ++     
Sbjct: 65  ADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIK----- 119

Query: 138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
            +   +  +++GIPNVGKS L N L   GR           A    +PG TK    +K+ 
Sbjct: 120 -NPRPMRALIVGIPNVGKSTLINRLA--GR---------NIAKTGDKPGVTKAQQWIKVG 167

Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
               + +LDTPGIL P+  D EV  KLA TGAI D+ +  +++A Y L  L      +  
Sbjct: 168 KE--MELLDTPGILWPKFEDEEVGLKLATTGAIKDTILNLQDVAVYALNFLKQHYPERLK 225

Query: 258 AKFSINQI 265
            ++S++ I
Sbjct: 226 ERYSLDDI 233

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Geobacillus sp. (strain WCH70) (taxid: 471223)

>sp|Q9BT17|MTG1_HUMAN Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 25/232 (10%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA   + +   + LVD I+EV DARIP S     F +     P      +LVLNK
Sbjct: 30  WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKP-----HLLVLNK 84

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHV----RNLRKSDYDA 138
           MDLA  T+ ++ +   + +   +    +  KD NVK+ +  +   +    R  RK + + 
Sbjct: 85  MDLADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENLE- 143

Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIA 197
                 +M++G+PNVGKS+L NSL    R     KGK     V  +PG T+ + S ++++
Sbjct: 144 ----YCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSKIQVS 193

Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
             P +++LDTPG+L P I  VE   KLAL G + D  VG + +A Y L  LN
Sbjct: 194 ERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q819W8|RBGA_BACCR Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rbgA PE=3 SV=1

 Score =  117 bits (293), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 31/248 (12%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R + +++ L+D+++E+ DAR+P SS     D++  H P     R++VLNK
Sbjct: 5   WFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKP-----RLVVLNK 59

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA----- 138
            D+A     K+WI +F ++   +  +N+     +KE    + A  + L K  +D      
Sbjct: 60  ADMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKE----IAAACKVLVKEKFDKMVAKG 115

Query: 139 -SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA 197
                +  +++GIPNVGKS L N L            K   A    +PG T     +K+ 
Sbjct: 116 IRPRAIRALIVGIPNVGKSTLINKL-----------AKKNIAKTGDRPGVTTAQQWIKVG 164

Query: 198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKW 257
               + +LDTPGIL P+  D  V  +LA TGAI DS +  +++A Y L  +      +  
Sbjct: 165 KE--MELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLK 222

Query: 258 AKFSINQI 265
            ++++N+I
Sbjct: 223 ERYNLNEI 230

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

>sp|D5DJL5|RBGA_BACMD Ribosome biogenesis GTPase A OS=Bacillus megaterium (strain DSM 319) GN=rbgA PE=3 SV=1

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 133/248 (53%), Gaps = 30/248 (12%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R + +++ L+DI+ E+ DARIP SS     D++  + P     RI++LNK
Sbjct: 5   WFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKP-----RIVLLNK 59

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDAS 139
           +D A P   ++W+ ++ +Q   +  +++     +K+ +    + LQ     +R       
Sbjct: 60  VDKADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKP 119

Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
              +  M++GIPNVGKS L N L       A++K     A    +PG T+    +K+ + 
Sbjct: 120 R-AIRAMIVGIPNVGKSTLINRL-------ASKK----IAKTGDRPGVTQAQQWIKVGNE 167

Query: 200 PNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKW 257
             + +LDTPGIL P+  D  V  KLA TGAI D+ +  +++A Y L  L   + ++ K+ 
Sbjct: 168 --LELLDTPGILWPKFEDETVGYKLATTGAIKDTILNMQDVAVYALRFLTSHYPEQLKQ- 224

Query: 258 AKFSINQI 265
            ++++N+I
Sbjct: 225 -RYNLNEI 231

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus megaterium (strain DSM 319) (taxid: 592022)

>sp|Q65JP4|RBGA_BACLD Ribosome biogenesis GTPase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rbgA PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 29/247 (11%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
           W+  HMA A R + +++ L+DI+ E+ DARIP SS    + +     +  RI++LNK D 
Sbjct: 5   WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62

Query: 87  ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD------ASS 140
           A  +  K W   F++   P+  +NS N   + + L       + L K  +D         
Sbjct: 63  ADSSVTKAWKQHFEKDGIPTLAINSVNGQGLNQIL----PASKELLKEKFDKMKAKGVKP 118

Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP 200
             +  +++GIPNVGKS L N L            K   A    +PG T     +K+    
Sbjct: 119 RAIRALIVGIPNVGKSTLINRL-----------AKKNIAKTGDRPGVTTAQQWVKVGKE- 166

Query: 201 NIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWA 258
            + +LDTPGIL P+  D  V  +LA TGAI DS +  +++A Y L  L  N+ +  KK  
Sbjct: 167 -LELLDTPGILWPKFEDELVGLRLAATGAIKDSIINLQDVAVYGLRFLEENYPERLKK-- 223

Query: 259 KFSINQI 265
           ++ + +I
Sbjct: 224 RYDLEEI 230

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

>sp|Q4PS77|MTG1_BOVIN Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 23/231 (9%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA   + +   + LVD I+EV DA+IP S     F +     P      +LVLNK
Sbjct: 30  WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPH-----LLVLNK 84

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD---AS 139
           MDLA   + ++ I   +++        +  KD NVK+ +      V  L  S Y      
Sbjct: 85  MDLADLKEQQKIIQHLEREGIKHVVFTNCVKDENVKQVI----PTVTELVGSSYRYHRGE 140

Query: 140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIAS 198
                +M++G+PNVGKS+L NSL    R     KGK     V  +PG T+ + S +++  
Sbjct: 141 HVEYCIMVIGVPNVGKSSLINSL----RRQHLRKGK--ATRVGGEPGITRAVMSRIQVCE 194

Query: 199 HPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
            P +++LDTPG+L P I  VE   KLAL G + D  VG + LA + L  LN
Sbjct: 195 RPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
225454936	369	PREDICTED: ribosome biogenesis GTPase A	0.956	0.772	0.656	1e-105
297813513	373	predicted protein [Arabidopsis lyrata su	0.956	0.764	0.607	4e-94
240255778	377	GTP binding protein [Arabidopsis thalian	0.956	0.755	0.594	4e-92
449450556	366	PREDICTED: ribosome biogenesis GTPase A-	0.912	0.743	0.595	4e-92
255570795	373	GTP binding protein, putative [Ricinus c	0.946	0.756	0.592	4e-91
356528601	399	PREDICTED: ribosome biogenesis GTPase A-	0.969	0.724	0.545	3e-85
224121730	338	predicted protein [Populus trichocarpa]	0.859	0.757	0.525	8e-73
19225001	370	putative GTPase domain containing protei	0.879	0.708	0.507	4e-70
194698884	379	unknown [Zea mays]	0.926	0.728	0.482	1e-67
357141159	373	PREDICTED: ribosome biogenesis GTPase A-	0.926	0.739	0.486	5e-66

>gi|225454936|ref|XP_002277185.1| PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera] gi|297744953|emb|CBI38545.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/291 (65%), Positives = 230/291 (79%), Gaps = 6/291 (2%)

Query: 7   SLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL 66
           ++  L + +G+ V ++    W+ PHMAAA+RA+++R+PLVD++LEVRDARIP SSE+DQL
Sbjct: 2   TIANLEKRLGSGV-KRAAKTWFSPHMAAASRAVSERIPLVDLVLEVRDARIPLSSEYDQL 60

Query: 67  RNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA 126
           RN    SSS+RI+VLNKMDLA+  + KEW+ +F+QQNC SFGVNSHNKDN+KE LKFLQA
Sbjct: 61  RNFP--SSSKRIIVLNKMDLANRLEIKEWMRYFEQQNCISFGVNSHNKDNIKECLKFLQA 118

Query: 127 HVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG 186
            V+ ++K D+  SS T T+ML+GIPNVGKSALANSLHQIGRI+AAEKGKL+HATVSP PG
Sbjct: 119 QVKGVKKIDH--SSYTATIMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHATVSPIPG 176

Query: 187 ETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLG 246
           ET+DI SLKI SHPN+YVLDTPGILPP+I DV VCSKLALTGAI D  VG KELAQYFL 
Sbjct: 177 ETRDISSLKIGSHPNVYVLDTPGILPPDILDVVVCSKLALTGAIKDCLVGEKELAQYFLS 236

Query: 247 ILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
           ILN SDEYKKW K S  + N+  T+  +      SE     KRQ PTDHTQ
Sbjct: 237 ILNRSDEYKKWEKLSAEE-NEISTIDQRVGCLGSSELDSRQKRQYPTDHTQ 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813513|ref|XP_002874640.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320477|gb|EFH50899.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/301 (60%), Positives = 226/301 (75%), Gaps = 16/301 (5%)

Query: 1   MATSSSSLFKLAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARI 57
           MAT+ S  +K+AREIG AV   S+     WYGPHMAAA RAI++R+PLVD +LE+RDARI
Sbjct: 1   MATAKS--WKIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARI 58

Query: 58  PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117
           P SS+++ LR   PF S +RI+VLNKM+LA P + K+ I +F+++   S+ VNSHNK+ V
Sbjct: 59  PLSSDYELLRKFSPFPS-QRIIVLNKMELAEPLELKKCIDYFEERKYLSYAVNSHNKECV 117

Query: 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
           K+FL FLQ+ VR L K+ Y  S  T T+MLLGIPN+GKSALANSLHQIGRI+AAEKGKL+
Sbjct: 118 KQFLNFLQSQVRELHKAGY--SGHTTTMMLLGIPNIGKSALANSLHQIGRISAAEKGKLK 175

Query: 178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG 237
           H TVS QPG+TKDI SLKI SHPN+YVLDTPGI PP ++D E+CSKLALTGAI D  VG 
Sbjct: 176 HTTVSSQPGDTKDIMSLKIGSHPNVYVLDTPGIFPPTLNDAEICSKLALTGAIPDDIVGE 235

Query: 238 KELAQYFLGILNFSDEYKKWAKFSINQ-INKPLTLHHKADQSSGSESGMIWKRQNPTDHT 296
            +LA+ FL ILN S EYKKWAK   +Q + + L+     D+SS S+     KRQ PTDHT
Sbjct: 236 IKLARLFLTILNSSYEYKKWAKLCKSQDLTESLS-----DESSKSDGKR--KRQYPTDHT 288

Query: 297 Q 297
           Q
Sbjct: 289 Q 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255778|ref|NP_192803.4| GTP binding protein [Arabidopsis thaliana] gi|3600035|gb|AAC35523.1| contains similarity to GTP-binding proteins [Arabidopsis thaliana] gi|332657513|gb|AEE82913.1| GTP binding protein [Arabidopsis thaliana]

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 179/301 (59%), Positives = 224/301 (74%), Gaps = 16/301 (5%)

Query: 1   MATSSSSLFKLAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARI 57
           MAT+ +  +K+AREIG AV   S+     WYGPHMAAA RAI++R+PLVD +LE+RDARI
Sbjct: 1   MATAKT--WKIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARI 58

Query: 58  PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117
           P SSE++ LR   P  S +RI+VLNKM+LA P + K+ I +F+++N  S+ VNSHNKD V
Sbjct: 59  PLSSEYELLRKFSPLPS-KRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCV 117

Query: 118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
           K+ L FLQ+ VR L K+ +  S  T T+MLLGIPNVGKSAL+NSLH IGRI+AAEKGKL+
Sbjct: 118 KQLLNFLQSQVRELHKAGH--SGHTTTMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLK 175

Query: 178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG 237
           H TVS QPG+TKDI SLKI SHPN+YVLDTPGI PP ++D E+C+KLALTGAI D  VG 
Sbjct: 176 HTTVSSQPGDTKDIMSLKIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTGAIPDDIVGE 235

Query: 238 KELAQYFLGILNFSDEYKKWAKFSINQ-INKPLTLHHKADQSSGSESGMIWKRQNPTDHT 296
            +LA+ FL ILN S EYKKWAK   +Q + + L+     D+SS S++    KRQ  TDHT
Sbjct: 236 LKLARLFLTILNSSHEYKKWAKLCKSQDLTESLS-----DESSKSDAKH--KRQYATDHT 288

Query: 297 Q 297
           Q
Sbjct: 289 Q 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450556|ref|XP_004143028.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus] gi|449482814|ref|XP_004156412.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]

 Score =  343 bits (881), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/292 (59%), Positives = 213/292 (72%), Gaps = 20/292 (6%)

Query: 11  LAREIGTAVSQKKGG-----GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ 65
           L R+IGTA++Q   G     GWY  HM AA+RA+A+R+PLVD +LEVRDARIP SSE++ 
Sbjct: 6   LMRKIGTAINQLAAGNRISSGWYDAHMEAASRAVAERIPLVDFVLEVRDARIPTSSEYEM 65

Query: 66  LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQ 125
           ++NH P  SS+RI+VLNK DLA  +Q + W   F+  NC S+GVNSHNK+N++EFL FLQ
Sbjct: 66  MKNHPP--SSKRIIVLNKTDLADQSQTEVWTRHFEDHNCISYGVNSHNKENIREFLNFLQ 123

Query: 126 AHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP 185
           A VR L+KS +  SS   T+ML+GIPNVGKSALANSLHQIGRI+AAEKGKL+HA VS QP
Sbjct: 124 ARVRELKKSGH--SSHATTMMLVGIPNVGKSALANSLHQIGRISAAEKGKLKHAVVSSQP 181

Query: 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
           GETK+I SLKIASHPNIYVLDTPGI PP+I D+EVCSKLALTGAI D  VG   + QY L
Sbjct: 182 GETKNISSLKIASHPNIYVLDTPGIFPPKIDDIEVCSKLALTGAIRDILVGEHVIVQYLL 241

Query: 246 GILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
            I+N S +YKKWA  S   +           + S   +    +R+ P+DHTQ
Sbjct: 242 TIVNSSVKYKKWANLSAISL-----------ECSTPSNLEKQRRRYPSDHTQ 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570795|ref|XP_002526350.1| GTP binding protein, putative [Ricinus communis] gi|223534309|gb|EEF36021.1| GTP binding protein, putative [Ricinus communis]

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 176/297 (59%), Positives = 211/297 (71%), Gaps = 15/297 (5%)

Query: 11  LAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLR 67
           LA EIG  V   S+ +   WY PHMAAA+ AIA+R+ LVD ++EVRDARIP SSE   L 
Sbjct: 2   LASEIGKRVMKASRNREQRWYNPHMAAASSAIAERISLVDFVIEVRDARIPLSSECQLLT 61

Query: 68  NHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAH 127
           NH    SSRRI+V+NKMDLA+  Q K+WI +F Q+   S+ +NSHNKDNVKEFL FLQ  
Sbjct: 62  NHS--DSSRRIIVMNKMDLANRLQLKDWIKYFKQRGFVSYAINSHNKDNVKEFLNFLQGQ 119

Query: 128 VRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
           VR L+  D+  S  T+T+M++GIPNVGKSALA SLH IGRI+AAEKGKL+HA V+P PGE
Sbjct: 120 VRGLKNIDH--SGCTITMMMVGIPNVGKSALAKSLHHIGRISAAEKGKLKHAKVTPHPGE 177

Query: 188 TKDIYSLK-------IASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL 240
           TKDI SLK       I SHPNIYVLDTPG+LPP+I D EVC KLALTG   D  +G +EL
Sbjct: 178 TKDISSLKACSLSLIIGSHPNIYVLDTPGVLPPQIFDAEVCFKLALTGTFRDGLIGEREL 237

Query: 241 AQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
           AQYFL ILN SDEYKKWAK S  +  K  T  +KA+     +     K+++ TDHTQ
Sbjct: 238 AQYFLAILNLSDEYKKWAKLSAREKEKSFT-DNKAECLRDKQLDTEGKKEHLTDHTQ 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528601|ref|XP_003532888.1| PREDICTED: ribosome biogenesis GTPase A-like [Glycine max]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/295 (54%), Positives = 211/295 (71%), Gaps = 6/295 (2%)

Query: 6   SSLFKLAREIGTAVSQ---KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE 62
           S+  +L R +GT   +   +  G W  P  AAA+RAIA+R+PL D++++VRDARIP SSE
Sbjct: 24  SAAARLGRRVGTTAKEELRRNKGAWRDPLPAAASRAIAERIPLADLVVQVRDARIPLSSE 83

Query: 63  FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLK 122
            + LRN+ P  S ++I+ LNKMDL   +  K W+ +F ++NC S GVN+HNK+N+K+ L 
Sbjct: 84  CEILRNYPP--SLKQIVALNKMDLVGTSNVKAWMGYFRERNCISCGVNAHNKENIKQLLS 141

Query: 123 FLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS 182
            +Q  V  L+ +D   ++ T TVML+GIPNVGKSAL N+LHQ+GRI+AAEKGKL+HATVS
Sbjct: 142 LIQRRVSELKGADQCDNNYTATVMLVGIPNVGKSALVNALHQVGRISAAEKGKLKHATVS 201

Query: 183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQ 242
           P+PGETKDI S KI SHPNIYVLDTP IL P++ +V++ SKL LTGAIGD  V  KE+AQ
Sbjct: 202 PEPGETKDIRSFKIGSHPNIYVLDTPAILSPKVPNVDILSKLILTGAIGDCLVRRKEVAQ 261

Query: 243 YFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
           +FL I N S++YKKWAK S+   N  L L+   +Q + S   M  K Q PTDHTQ
Sbjct: 262 HFLAIHNSSEQYKKWAKLSMKD-NDRLFLNGTTEQLTSSGLHMKHKNQIPTDHTQ 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121730|ref|XP_002318658.1| predicted protein [Populus trichocarpa] gi|222859331|gb|EEE96878.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 156/297 (52%), Positives = 195/297 (65%), Gaps = 41/297 (13%)

Query: 1   MATSSSSLFKLAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS 60
           MA+ S  L    +EIG A+ + K G WY  HMAAA+ AIA R+PL D ILEVRDARIP S
Sbjct: 3   MASRSIGL----KEIGEALKKAKSG-WYSLHMAAASHAIAQRIPLADFILEVRDARIPLS 57

Query: 61  SEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEF 120
           S   QL ++ P SS RRI+V+NK DLA+ +Q KEW  +F+QQNC S+GVNSHNK++VK+F
Sbjct: 58  SHC-QLLSNFPPSSLRRIIVMNKTDLANRSQLKEWTKYFEQQNCISYGVNSHNKEDVKKF 116

Query: 121 LKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT 180
           L FLQA VR L++ D+  S  T T+M++GIPNVGKSALANSLHQ+GRI+AAEKGKL+H  
Sbjct: 117 LNFLQAQVRELKRIDH--SGHTTTMMIIGIPNVGKSALANSLHQLGRISAAEKGKLKHTI 174

Query: 181 VSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKEL 240
           VSP PGETK+I SLK+ +  N+                                VG KEL
Sbjct: 175 VSPHPGETKNISSLKVRAIENL--------------------------------VGEKEL 202

Query: 241 AQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
           A+YFL ILN SD YKKW + S +  +K  T   + + SS S+  M  KRQ P+DHTQ
Sbjct: 203 ARYFLAILNTSDGYKKWERLSTHGNDKSFT-GQEVEGSSDSKLNMKRKRQYPSDHTQ 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19225001|gb|AAL86477.1|AC077693_16 putative GTPase domain containing protein [Oryza sativa Japonica Group] gi|31433619|gb|AAP55111.1| expressed protein [Oryza sativa Japonica Group] gi|125533031|gb|EAY79596.1| hypothetical protein OsI_34736 [Oryza sativa Indica Group] gi|125575767|gb|EAZ17051.1| hypothetical protein OsJ_32544 [Oryza sativa Japonica Group]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 139/274 (50%), Positives = 183/274 (66%), Gaps = 12/274 (4%)

Query: 25  GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKM 84
           G WYG HMAAA RAI  R+PLVD++LEVRDAR+P +S F  LR   P    RR++VLNK 
Sbjct: 21  GAWYGRHMAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKA 80

Query: 85  DLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVT 144
           DLA P+Q ++W+ +  Q +C    +NSH+++ +KE L  ++A +R ++  + D    T T
Sbjct: 81  DLADPSQTEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREIKLGESDC---TGT 137

Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
           V+L+GIPNVGKSA+ N++H+IGRI AAEKGKL+HA VS  PGETKDI   K+ASHPNIYV
Sbjct: 138 VLLVGIPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVASHPNIYV 197

Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
           LDTPG+L P   + E    LALTGAI DS +   E+AQ+ L ILN  + YKKW   ++NQ
Sbjct: 198 LDTPGVLSPVFFNDESGPLLALTGAIKDSMMQEFEIAQFLLAILNSRETYKKWE--NMNQ 255

Query: 265 I-NKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
             + P   H  +  S  +      KRQ  +DHTQ
Sbjct: 256 AGDMPSFSHAMSSSSHHN------KRQYASDHTQ 283

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194698884|gb|ACF83526.1| unknown [Zea mays]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/290 (48%), Positives = 187/290 (64%), Gaps = 14/290 (4%)

Query: 11  LAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL-RNH 69
           ++R +G AV +   G WYG HMA+A RAI  R+PLVD++LEVRDAR P SS F+ L R  
Sbjct: 9   VSRRLGAAV-RGLSGAWYGRHMASAERAIRARLPLVDLVLEVRDARAPASSSFEPLLRRR 67

Query: 70  HPFSSSRR-ILVLNKMDLASPTQFKEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAH 127
            P    RR +++LNK DLA P++ + W+ +  +Q  C    VNSH+++++KE LK +QA 
Sbjct: 68  GPLEPDRRAVVLLNKADLADPSETEGWVAYIKKQRRCSCVAVNSHSRESIKEVLKVVQAR 127

Query: 128 VRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE 187
           +R ++  D   S+ T T +L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS  PGE
Sbjct: 128 MREIKHGD---SNCTGTALLVGIPNVGKSAIVNAIHQIGRIAAAEKGKLKHAIVSSHPGE 184

Query: 188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI 247
           T+DI   KIASHPNIYVLDTPG+L P   D     +LALTGAI DS +   + AQ  L I
Sbjct: 185 TRDIRGYKIASHPNIYVLDTPGVLSPRFADDGSGPRLALTGAIKDSLLEDYDTAQLLLAI 244

Query: 248 LNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
           +N   EY+KW K  +N+     +  +       +  G   K Q  +DHTQ
Sbjct: 245 VNSGKEYRKWEK--LNKAGDSFSCGNTI-----TPRGHNSKEQYASDHTQ 287

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141159|ref|XP_003572110.1| PREDICTED: ribosome biogenesis GTPase A-like [Brachypodium distachyon]

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/288 (48%), Positives = 190/288 (65%), Gaps = 12/288 (4%)

Query: 11  LAREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH 70
            +R +G AV +   G WYG HMAAA RAI  R+PLVD++LEVRDARIP +S F+ LR   
Sbjct: 10  FSRRLGAAV-RGLSGAWYGRHMAAADRAIRARLPLVDLVLEVRDARIPATSAFEPLRRRS 68

Query: 71  PFS-SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR 129
                 RRI+ LNK DLA P++ ++W+ F  Q+ C S  +NSH+++++KE L  +++ +R
Sbjct: 69  QEDLDGRRIVALNKADLADPSETQKWVAFMKQRGCSSVAINSHSRESIKELLNVVRSKIR 128

Query: 130 NLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETK 189
            ++  + D    T TV+L+GIPNVGKSA+ N++HQIGRI AAEKGKL+HA VS  PGET+
Sbjct: 129 EIKLGENDC---TGTVLLVGIPNVGKSAIINAMHQIGRIGAAEKGKLKHAIVSSHPGETR 185

Query: 190 DIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
           DI   K+ASHPNIYVLDTPGIL       E   +LALTGAI DS +   ++A++ L +LN
Sbjct: 186 DISGYKVASHPNIYVLDTPGILCRTFASDECGPRLALTGAIKDSLLEEHDIAKFLLALLN 245

Query: 250 FSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
              EY+ W   ++N++     L   AD +SG       KRQ  +DHTQ
Sbjct: 246 LRKEYRDWD--NLNRMGDKSCL---ADGTSGRSQHT--KRQYSSDHTQ 286

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2139197	377	AT4G10650 "AT4G10650" [Arabido	0.959	0.758	0.6	1.1e-85
UNIPROTKB|Q8S7M9	370	OSJNBa0095C07.33 "Expressed pr	0.922	0.743	0.496	3.1e-67
TAIR|locus:2062657	386	AT2G41670 "AT2G41670" [Arabido	0.822	0.634	0.435	1.5e-49
UNIPROTKB|Q53KJ1	370	Os11g0447300 "Short integument	0.755	0.608	0.456	4.2e-47
UNIPROTKB|Q720E9	287	LMOf2365_1290 "Ribosome biogen	0.721	0.749	0.370	1.9e-28
UNIPROTKB|E1C7T7	332	MTG1 "Mitochondrial GTPase 1"	0.751	0.674	0.352	2.4e-28
MGI|MGI:2685015	326	Mtg1 "mitochondrial GTPase 1 h	0.708	0.647	0.346	1.9e-26
RGD|6497155	326	LOC100910751 "mitochondrial GT	0.708	0.647	0.346	2.5e-26
UNIPROTKB|Q9BT17	334	MTG1 "Mitochondrial GTPase 1"	0.714	0.637	0.345	8.4e-26
UNIPROTKB|I3LR29	336	LOC100153322 "Mitochondrial GT	0.721	0.639	0.346	7.6e-25

TAIR|locus:2139197 AT4G10650 "AT4G10650" [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 180/300 (60%), Positives = 223/300 (74%)

Query:     1 MATSSSSLFKLAREIGTAV---SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARI 57
             MAT+ +  +K+AREIG AV   S+     WYGPHMAAA RAI++R+PLVD +LE+RDARI
Sbjct:     1 MATAKT--WKIAREIGDAVIKASRNPNRRWYGPHMAAAVRAISERIPLVDFVLEIRDARI 58

Query:    58 PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV 117
             P SSE++ LR   P  S +RI+VLNKM+LA P + K+ I +F+++N  S+ VNSHNKD V
Sbjct:    59 PLSSEYELLRKFSPLPS-KRIIVLNKMELADPLELKKCIDYFEERNYLSYAVNSHNKDCV 117

Query:   118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR 177
             K+ L FLQ+ VR L K+ +  S  T T+MLLGIPNVGKSAL+NSLH IGRI+AAEKGKL+
Sbjct:   118 KQLLNFLQSQVRELHKAGH--SGHTTTMMLLGIPNVGKSALSNSLHHIGRISAAEKGKLK 175

Query:   178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGG 237
             H TVS QPG+TKDI SLKI SHPN+YVLDTPGI PP ++D E+C+KLALTGAI D  VG 
Sbjct:   176 HTTVSSQPGDTKDIMSLKIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTGAIPDDIVGE 235

Query:   238 KELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
              +LA+ FL ILN S EYKKWAK   +Q    LT    +D+SS S++    KRQ  TDHTQ
Sbjct:   236 LKLARLFLTILNSSHEYKKWAKLCKSQ---DLT-ESLSDESSKSDAKH--KRQYATDHTQ 289

GO:0005525 "GTP binding" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8S7M9 OSJNBa0095C07.33 "Expressed protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 142/286 (49%), Positives = 187/286 (65%)

Query:    12 AREIGTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP 71
             +R +  AV +   G WYG HMAAA RAI  R+PLVD++LEVRDAR+P +S F  LR   P
Sbjct:     9 SRRLSDAV-RGLSGAWYGRHMAAADRAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSP 67

Query:    72 FSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL 131
                 RR++VLNK DLA P+Q ++W+ +  Q +C    +NSH+++ +KE L  ++A +R +
Sbjct:    68 EPDRRRLVVLNKADLADPSQTEKWMAYMKQTSCSCVALNSHSREGIKELLNAVRAKIREI 127

Query:   132 RKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI 191
             +  + D    T TV+L+GIPNVGKSA+ N++H+IGRI AAEKGKL+HA VS  PGETKDI
Sbjct:   128 KLGESDC---TGTVLLVGIPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDI 184

Query:   192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
                K+ASHPNIYVLDTPG+L P   + E    LALTGAI DS +   E+AQ+ L ILN  
Sbjct:   185 SGYKVASHPNIYVLDTPGVLSPVFFNDESGPLLALTGAIKDSMMQEFEIAQFLLAILNSR 244

Query:   252 DEYKKWAKFSINQINKPLTLHHKADQSSGSESGMIWKRQNPTDHTQ 297
             + YKKW   ++NQ     +  H    SS        KRQ  +DHTQ
Sbjct:   245 ETYKKWE--NMNQAGDMPSFSHAMSSSSHHN-----KRQYASDHTQ 283

GO:0003924 "GTPase activity" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

TAIR|locus:2062657 AT2G41670 "AT2G41670" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 111/255 (43%), Positives = 156/255 (61%)

Query:    15 IGTAVSQKKGG--GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF 72
             IG     K  G   W+  HMAAATRAI +R+ L D+++EVRDARIP SS  + L++    
Sbjct:    14 IGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQ--M 71

Query:    73 SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLR 132
             S+ RRI+ LNK DLA+P    +W   F+        +N+H++ +V + L  ++     L+
Sbjct:    72 SAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLDLVE-----LK 126

Query:   133 KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192
               +  A   T+ VM++G+PNVGKSAL NS+HQI       + +L+ ATV P PG T+DI 
Sbjct:   127 LKEVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFPVQERLKRATVGPLPGVTQDIA 186

Query:   193 SLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD 252
               KIA  P+IYVLD+PG+L P I D+E   KLAL+G++ DS VG + +AQYFL ILN   
Sbjct:   187 GFKIAHRPSIYVLDSPGVLVPSIPDIETGLKLALSGSVKDSVVGEERIAQYFLAILNIRG 246

Query:   253 EYKKWAKFSINQINK 267
                 W K+ +  IN+
Sbjct:   247 TPLHW-KYLVEGINE 260

GO:0005525 "GTP binding" evidence=ISS;IBA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q53KJ1 Os11g0447300 "Short integuments 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 111/243 (45%), Positives = 152/243 (62%)

Query:    24 GGG---WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILV 80
             GGG   W+  HMAAA+RAI DR+ L D++LEVRDARIP SS  + L+     +S RRIL 
Sbjct:    19 GGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSANEDLQP--VLASKRRILA 76

Query:    81 LNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDA 138
             LNK DLA+P     W+  F+  +Q+C S  +N+H+  +V + L  ++  ++     +   
Sbjct:    77 LNKKDLANPNIMNRWLHHFESCKQDCIS--INAHSTSSVSQLLGLVEFKLKEAISKE--- 131

Query:   139 SSDTVTVMLLGIPNVGKSALANSLHQI--GRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
                T+ VM++G+PNVGKSAL NS+H+I   R    +K K   ATV P PG T+DI   KI
Sbjct:   132 --PTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNK--RATVGPLPGVTQDIAGYKI 187

Query:   197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKK 256
             +S P+IYVLDTPG+L P I D+E   KLALTGA+ DS VG + +A+Y L +LN       
Sbjct:   188 SSQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLH 247

Query:   257 WAK 259
             W +
Sbjct:   248 WER 250

GO:0003924 "GTPase activity" evidence=IBA

GO:0005739 "mitochondrion" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q720E9 LMOf2365_1290 "Ribosome biogenesis GTPase A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 89/240 (37%), Positives = 122/240 (50%)

Query:    27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
             W+  HMA A R + +++ LVD+I E+ DARIP SS    L         RR+++LNK D 
Sbjct:     5 WFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEI--IHQKRRVIILNKADT 62

Query:    87 ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL-RKSDYDASSD---- 141
             A     KEWI +F ++  P+  VN+      K   K  QA  + +  K D   S      
Sbjct:    63 ADEKTTKEWIDYFAEKGLPAVAVNAQEG---KGLFKIEQAAEKLMAEKFDRLRSKGMKPR 119

Query:   142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
              +  M+LGIPNVGKS L N L        A+K   R      +PG TK    +K+     
Sbjct:   120 AIRAMILGIPNVGKSTLINRL--------AKKNIARTGN---KPGVTKAQQWIKVGK--T 166

Query:   202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
             + +LDTPGIL P+  D E+  KLALTGAI D  +  +E+A Y L  L  ++ D  + W K
Sbjct:   167 LELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYPDRLQNWLK 226

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C7T7 MTG1 "Mitochondrial GTPase 1" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 84/238 (35%), Positives = 123/238 (51%)

Query:    22 KKGGGWYGPHMAAATRAIADRMPLVDIILEVRDAR---IPFSSEFDQLRNHHPFSSSRRI 78
             +    W+  HMA   R +   +   D ++EV DAR   IP S     L+          +
Sbjct:    34 RDAASWFPGHMAKGLRQMRASLRRADCLVEVHDARQPHIPLSGRNPVLQE--VLGIRPHL 91

Query:    79 LVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYD 137
             LVLNKMDLA P Q    +    QQ C         +D NVK+ +  L A + N     + 
Sbjct:    92 LVLNKMDLADPRQQSRVLEQLRQQGCSYVVFTDCQRDSNVKKIVP-LVAKLVNSSPRYHR 150

Query:   138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKI 196
             A S   ++M++G+PNVGKS+L NSL ++      EK +     V  +PG TK + + +++
Sbjct:   151 AESTEYSIMVIGVPNVGKSSLINSLRRLH--LKKEKPQ----PVGGEPGVTKAVLTRIQV 204

Query:   197 ASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEY 254
                P +Y++DTPG+LPP++ DVE   KLAL GAI D  VG   +A Y L +LN   ++
Sbjct:   205 CETPLVYLVDTPGVLPPKLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLNQQQQF 262

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2685015 Mtg1 "mitochondrial GTPase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 79/228 (34%), Positives = 122/228 (53%)

Query:    27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
             W+  HMA   + +   +  VD ++EV DARIPFS     F +L    P      +LVLNK
Sbjct:    29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83

Query:    84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
             MDLA  T+ ++ +   +++   +    +  KD N+K+ +  +   +R   +  + A +  
Sbjct:    84 MDLADLTEQQKIVQRLEEKGLSNVLFTNCVKDENIKQIVPKVMELIRCSYRY-HRAETPE 142

Query:   143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
               +M++G+PNVGKS+L NSL    R      GK   A V  +PG T+ + S +++   P 
Sbjct:   143 YCIMVVGVPNVGKSSLINSL----RRQHLRTGKA--ARVGGEPGITRAVTSRIQVCERPL 196

Query:   202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
             +++LDTPG+L P I  VE   KLAL G + D  VG + +A Y L  LN
Sbjct:   197 VFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

RGD|6497155 LOC100910751 "mitochondrial GTPase 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 79/228 (34%), Positives = 121/228 (53%)

Query:    27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
             W+  HMA   + +   + LVD ++EV DARIPFS     F +L    P      +LVLNK
Sbjct:    29 WFPGHMAKGLKKMQSSLKLVDCVIEVHDARIPFSGRNPLFQELLGLKP-----HLLVLNK 83

Query:    84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
             MDLA  T+ ++ +   +++   +    +  KD N+K+ +  +   +       + A +  
Sbjct:    84 MDLADLTEQQKIVQHLEEKGLRNVIFTNCIKDENIKQIIPKVTELI-GCSYRYHRAENPE 142

Query:   143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
               +M++G+PNVGKS+L NSL    R      GK   A V  +PG T+ + S +++   P 
Sbjct:   143 YCIMVVGVPNVGKSSLINSL----RRQHLRTGKA--ARVGGEPGITRAVTSRIQVCERPL 196

Query:   202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
             +++LDTPG+L P I  VE   KLAL G + D  VG + +A Y L  LN
Sbjct:   197 MFLLDTPGVLAPRIQSVETGLKLALCGTVLDHLVGEETMADYLLYTLN 244

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9BT17 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 78/226 (34%), Positives = 117/226 (51%)

Query:    27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
             W+  HMA   + +   + LVD I+EV DARIP S      +          +LVLNKMDL
Sbjct:    30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQE--TLGLKPHLLVLNKMDL 87

Query:    87 ASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT-VT 144
             A  T+ ++ +   + +   +    +  KD NVK+ +  +   +   R   Y    +    
Sbjct:    88 ADLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIG--RSHRYHRKENLEYC 145

Query:   145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIY 203
             +M++G+PNVGKS+L NSL    R     KGK     V  +PG T+ + S ++++  P ++
Sbjct:   146 IMVIGVPNVGKSSLINSL----RRQHLRKGKATR--VGGEPGITRAVMSKIQVSERPLMF 199

Query:   204 VLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
             +LDTPG+L P I  VE   KLAL G + D  VG + +A Y L  LN
Sbjct:   200 LLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|I3LR29 LOC100153322 "Mitochondrial GTPase 1" [Sus scrofa (taxid:9823)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 79/228 (34%), Positives = 118/228 (51%)

Query:    27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN---HHPFSSSRRILVLNK 83
             W+  HMA   R +   + LVD ILEV DARI F       RN            +LVLNK
Sbjct:    30 WFPGHMAKGLRKMQSSLKLVDCILEVHDARISFGIPLSG-RNPLFQETLGLKPHLLVLNK 88

Query:    84 MDLASPTQFKEWITFFDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVRNLRKSDYDASSDT 142
             MDLA   + ++ +   +++   +    +  KD N+K+ +  +   V +  +  +   S  
Sbjct:    89 MDLADLKEQQKIMQHLEREGLKNVIFTNCVKDENIKQIIPKVTELVGSSCRY-HRGESVE 147

Query:   143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPN 201
               +M++G+PNVGKS+L N+L    R     KGK     V  +PG T+ + S +++   P 
Sbjct:   148 YCIMVIGVPNVGKSSLINAL----RRQHLRKGKA--TKVGGEPGITRAVMSRVQVCERPL 201

Query:   202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
             +++LDTPG+L P I +VE   KLAL G + D  VG + LA Y L  LN
Sbjct:   202 MFLLDTPGVLAPRIQNVETGLKLALCGTVLDHLVGEETLADYLLYTLN 249

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014143001 SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (369 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	9e-61
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	3e-55
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	4e-55
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	1e-38
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	2e-18
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	9e-17
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	1e-16
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	2e-15
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	4e-13
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	8e-12
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	1e-09
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	2e-09
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	4e-09
cd00880	161	cd00880, Era_like, E	3e-08
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	3e-08
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	4e-06
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	1e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	1e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-05
cd04163	168	cd04163, Era, E	9e-05
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	1e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	1e-04
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	2e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	2e-04
COG1084	346	COG1084, COG1084, Predicted GTPase [General functi	2e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	4e-04
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	9e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.001
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.002
TIGR00157	245	TIGR00157, TIGR00157, ribosome small subunit-depen	0.002
COG1159	298	COG1159, Era, GTPase [General function prediction	0.002
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	0.002

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score =  193 bits (494), Expect = 9e-61
 Identities = 84/254 (33%), Positives = 134/254 (52%), Gaps = 25/254 (9%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R I +++ LVD+++EV DARIP SS     D++R + P     R++VLNK
Sbjct: 3   WFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKP-----RLIVLNK 57

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
            DLA P   K+W+ +F+++   +  +N+     VK+ +K  +  +  +N +       + 
Sbjct: 58  ADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLLNR 117

Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
            +  M++GIPNVGKS L N L   G+         + A V  +PG TK    +K++    
Sbjct: 118 PIRAMIVGIPNVGKSTLINRL--AGK---------KVAKVGNRPGVTKGQQWIKLS--DG 164

Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL--NFSDEYKKWAK 259
           + +LDTPGIL P+  D EV  KLA TGAI D  +  +++A + L  L  ++ +  K+  K
Sbjct: 165 LELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPELLKERYK 224

Query: 260 FSINQINKPLTLHH 273
                 +    L  
Sbjct: 225 LDELPEDIVELLEA 238

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score =  176 bits (448), Expect = 3e-55
 Identities = 72/189 (38%), Positives = 102/189 (53%), Gaps = 22/189 (11%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R I +++ LVD+++EVRDARIP SS   + D++  + P     R++VLNK
Sbjct: 1   WFPGHMAKALRQIKEKLKLVDVVIEVRDARIPLSSRNPDLDKILGNKP-----RLIVLNK 55

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA-HVRNLRKSDYDASSDT 142
            DLA P + K+W+ +F  Q  P   VN+ N   VK+ LK  +     N +          
Sbjct: 56  ADLADPAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLLPRP 115

Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
           +  M++GIPNVGKS L N L              + A V  +PG T+    ++I   PNI
Sbjct: 116 LRAMVVGIPNVGKSTLINRLRGK-----------KVAKVGNKPGVTRGQQWIRIG--PNI 162

Query: 203 YVLDTPGIL 211
            +LDTPGIL
Sbjct: 163 ELLDTPGIL 171

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score =  179 bits (458), Expect = 4e-55
 Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 23/228 (10%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE---FDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R I + + LVD+++EV DARIP SSE    D++  + P     R+L+LNK
Sbjct: 6   WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKP-----RLLILNK 60

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV--RNLRKSDYDASSD 141
            DLA P   K+WI +F++Q   +  +N+     VK+ LK  +  +  +N R+        
Sbjct: 61  SDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPR 120

Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
            +  M++GIPNVGKS L N L   G+         + A    +PG TK    +K+     
Sbjct: 121 AIRAMIIGIPNVGKSTLINRL--AGK---------KIAKTGNRPGVTKAQQWIKLGK--G 167

Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
           + +LDTPGIL P++ D EV  KLALTGAI D  +  +E+A + L  L+
Sbjct: 168 LELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLS 215

Length = 287

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  138 bits (349), Expect = 1e-38
 Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 27/245 (11%)

Query: 26  GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLN 82
            W+  HM  A R + + +  VD+++EV DAR P  +   E +++    P     ++LVLN
Sbjct: 15  QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKP-----KLLVLN 69

Query: 83  KMDLASPTQFKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
           K DLA     K+W  +F ++       V++ ++   K+  K L+       K        
Sbjct: 70  KADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLL 129

Query: 142 --TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH 199
              + V ++G PNVGKS L N L  +G+         + A  S +PG TK I  +K+   
Sbjct: 130 KRKIRVGVVGYPNVGKSTLINRL--LGK---------KVAKTSNRPGTTKGIQWIKLDDG 178

Query: 200 PNIYVLDTPGILPPEIHDVE-VCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWA 258
             IY+LDTPGI+PP+  D E V  KLA  G I D  +   E+A+  LG L   + Y +  
Sbjct: 179 --IYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLLIDEHYGE-- 234

Query: 259 KFSIN 263
           K +I 
Sbjct: 235 KLNIT 239

Length = 322

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 35/173 (20%)

Query: 46  VDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCP 105
            D++LEV DAR P  +   +L         + I+VLNK DL      ++W   F+ +  P
Sbjct: 12  ADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLVPREVLEKWKEVFESEGLP 71

Query: 106 SFGVNSHNKDNVKEFLKFLQAH--VRNLRKSDYDASSD--TVTVMLLGIPNVGKSALANS 161
              V++                   R LR++  + + D   V V ++G P VGKS++ N+
Sbjct: 72  VVYVSAR-------------ERLGTRILRRTIKELAIDGKPVIVGVVGYPKVGKSSIINA 118

Query: 162 LHQIGRITAAEKGKLRH-ATVSPQPGE---TKDIYSLKIASHPNIYVLDTPGI 210
           L          KG  RH A+ SP PG    TK I  ++I S   IY++DTPG+
Sbjct: 119 L----------KG--RHSASTSPIPGSPGYTKGIQLVRIDS--KIYLIDTPGV 157

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 76.1 bits (188), Expect = 9e-17
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 37/186 (19%)

Query: 47  DIILEVRDARIPFSSEFDQLRNHHPFSSSRR--ILVLNKMDLASPTQFKEWITFFDQQNC 104
           D+ILEV DAR P      Q+          +  +LVLNK+DL      ++W+ +   +  
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNE-F 59

Query: 105 P------SFGVNSHNKDNVKEFLKFLQAHVR--------NLRKS--DYDASSD---TVTV 145
           P      S      N     + +K     +          L K   +Y  +     ++TV
Sbjct: 60  PTVAFKASTQQQKKNLSRKSKKVKASDDLLSSSACLGADALLKLLKNYARNKGIKTSITV 119

Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHA-TVSPQPGETKDIYSLKIASHPNIYV 204
            ++G PNVGKS++ NSL            K   A  V   PG TK +  + +  H  + +
Sbjct: 120 GVVGYPNVGKSSVINSL------------KRSRACNVGATPGVTKSMQEVHLDKH--VKL 165

Query: 205 LDTPGI 210
           LD+PG+
Sbjct: 166 LDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 20/165 (12%)

Query: 47  DIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWIT-FFDQQNCP 105
           D+++EV DAR P SS    +       + + I+VLNK DL      ++W+    +     
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTK 60

Query: 106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQI 165
           +F +++ N   + +    +      L           V V+  G+PNVGKS+  N+L   
Sbjct: 61  TFFISATNGQGILKLKAEITKQKLKL----KYKKGIRVGVV--GLPNVGKSSFINALL-- 112

Query: 166 GRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210
                          V   PG TK    +K+     IY+ DTPGI
Sbjct: 113 ---------NKFKLKVGSIPGTTKLQQDVKLDK--EIYLYDTPGI 146

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 21/141 (14%)

Query: 78  ILVLNKMDL----ASPTQFKEWI--TFFDQQNCPS--FGVNSHNKDNVKEFLKFLQAHVR 129
           ILV NK+DL      P + K+W+                V++     V+E ++ ++   +
Sbjct: 64  ILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSAKKGWGVEELIEEIKKLAK 123

Query: 130 NLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETK 189
                          V ++G  NVGKS L N+L +        +  ++  TVSP PG T 
Sbjct: 124 YRGD-----------VYVVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTL 172

Query: 190 DIYSLKIASHPNIYVLDTPGI 210
            +  +KI       + DTPGI
Sbjct: 173 GL--IKIPLGEGKKLYDTPGI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 43/169 (25%)

Query: 47  DIILEVRDARIPFSSEFDQLRNHHPFSSSRR--ILVLNKMDLASPTQFKEWITFFDQQNC 104
           D+++++ DAR P       L  +       +  +L+LNK DL +  Q K W  +F     
Sbjct: 13  DVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQRKAWARYF----- 67

Query: 105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ 164
                       +     F  A                 T+ L+G PNVGKS+L N+L  
Sbjct: 68  -----KKEGIVVL-----FFSALNEA-------------TIGLVGYPNVGKSSLINAL-- 102

Query: 165 IGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP 213
           +G          +  +VS  PG+TK   ++ +   P I + D PG++ P
Sbjct: 103 VGS---------KKVSVSSTPGKTKHFQTIFLE--PGITLCDCPGLVFP 140

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
            V L+G PNVGKS L N+L   G          + A VS  PG T+D     +     I 
Sbjct: 1   RVALVGRPNVGKSTLINAL--TGA---------KVAIVSDYPGTTRDPILGVLGLGRQII 49

Query: 204 VLDTPGILPPEIHDVEV 220
           ++DTPG++        V
Sbjct: 50  LVDTPGLIEGASEGKGV 66

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 28/145 (19%)

Query: 78  ILVLNKMDL----ASPTQFKEWI--TFFDQQNCPS--FGVNSHNKDNVKEFLKFLQAHVR 129
           +LV NK+DL     + ++ KEW+     +    P     V++   + + E L  +    R
Sbjct: 94  LLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKI-KKAR 152

Query: 130 NLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETK 189
           N +            V ++G+ NVGKS+L      I ++     G     T SP PG T 
Sbjct: 153 NKKD-----------VYVVGVTNVGKSSL------INKLLKQNNGDKDVITTSPFPGTTL 195

Query: 190 DIYSLKIASHPNIYVLDTPGILPPE 214
           D+  ++I       + DTPGI+   
Sbjct: 196 DL--IEIPLDDGHSLYDTPGIINSH 218

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 51/182 (28%)

Query: 78  ILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYD 137
           ++VLNK DL    + +E +  +++   P   V++   + + E  + L+            
Sbjct: 37  VIVLNKADLVDDEELEELLEIYEKLGYPVLAVSAKTGEGLDELRELLKGK---------- 86

Query: 138 ASSDTVTVMLLGIPNVGKSALANSLH-----QIGRITAA-EKGKLRHATVSPQPGETKDI 191
                 T +L+G   VGKS L N+L        G I+    +G  RH T   +      +
Sbjct: 87  ------TSVLVGQSGVGKSTLLNALLPELVLATGEISEKLGRG--RHTTTHRE------L 132

Query: 192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
           + L         ++DTPG                    +G   +  +ELA+YF      +
Sbjct: 133 FPLP----GGGLIIDTPGF-----------------RELGLLHIDPEELAEYFPEFEELA 171

Query: 252 DE 253
            +
Sbjct: 172 GQ 173

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 34/173 (19%)

Query: 47  DIILEVRDARIPFS--SEF--DQLRNHHPFSSSRRILVLNKMDLASPTQF-KEWITFFDQ 101
           D+I++V DAR P     +     LR   P      I VLNK DL  PT   K W+    +
Sbjct: 10  DVIIQVLDARDPMGTRCKHVEKYLRKEKP--HKHLIFVLNKCDLV-PTWVTKRWVKVLSK 66

Query: 102 QN-CPSFGV---NSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSA 157
           +    +F     N   K  +   L       R   K   D     ++V  +G PNVGKS+
Sbjct: 67  EYPTLAFHASITNPFGKGALINLL-------RQFAKLHSD--KKQISVGFIGYPNVGKSS 117

Query: 158 LANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI 210
           + N+L              +   V+P PGETK      I     IY++D PG+
Sbjct: 118 VINTL-----------RSKKVCKVAPIPGETKVW--QYITLMKRIYLIDCPGV 157

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 13/67 (19%)

Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN--IYV 204
           + G PNVGKS+L N+L   G+             VSP PG T+D    +    P   + +
Sbjct: 2   IFGRPNVGKSSLLNALL--GQNVGI---------VSPIPGTTRDPVRKEWELLPLGPVVL 50

Query: 205 LDTPGIL 211
           +DTPG+ 
Sbjct: 51  IDTPGLD 57

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 51/185 (27%)

Query: 78  ILVLNKMDLAS--PTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD 135
           ++VLNK+DL        KE +  ++    P   V++ N D ++E  + L           
Sbjct: 114 VIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK-------- 165

Query: 136 YDASSDTVTVMLLGIPNVGKSALANSL-----HQIGRITAAEKGKLRHATVSPQPGETKD 190
                     +LLG   VGKS L N+L      + G I+    G+ RH T   +      
Sbjct: 166 --------ITVLLGQSGVGKSTLINALLPELNQKTGEISEK-LGRGRHTTTHVE------ 210

Query: 191 IYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF 250
           ++ L        +++DTPG     +  +E                  ++L Q F      
Sbjct: 211 LFPLP----GGGWIIDTPGFRSLGLAHLE-----------------PEDLVQAFPEFAEL 249

Query: 251 SDEYK 255
           + + K
Sbjct: 250 ARQCK 254

Length = 301

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 63  FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDNVKEFL 121
           F+++ N   F ++  IL LNK DL     F+E +         P +  + ++ ++  +++
Sbjct: 224 FEEICNSPWFKNTPIILFLNKKDL-----FEEKLKKGPLSDYFPEYEGDPNDYESASKYI 278

Query: 122 --KFLQAHVRNLRKSDY 136
             KFL+ +  N  +  Y
Sbjct: 279 RNKFLELNKNNSERKIY 295

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSL-KIASHPNIYV 204
           ++G PNVGKS L N      R+T       R A VS  PG T+D  Y   +        +
Sbjct: 2   IVGRPNVGKSTLFN------RLT-----GRRDAIVSDTPGVTRDRKYGEAEWGGRE-FIL 49

Query: 205 LDTPGI 210
           +DT GI
Sbjct: 50  IDTGGI 55

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 51/251 (20%), Positives = 90/251 (35%), Gaps = 39/251 (15%)

Query: 29  GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS 88
              +        +     D+IL V D R   +   +++      S    ILV+NK+D  +
Sbjct: 70  QELIREQALIAIEE---ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKID--N 124

Query: 89  PTQFKEWITFFDQQNCPSFGVN-------SHNKDNVKEFLKFLQAHVRNLRKSDYDASSD 141
               +    F+      S G          H +  + + L  +   +    + + +  +D
Sbjct: 125 LKAEELAYEFY------SLGFGEPVPISAEHGR-GIGDLLDAVLELLPPDEEEEEEEETD 177

Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSLKIASHP 200
            + + ++G PNVGKS+L N       I   E        VS   G T+D I         
Sbjct: 178 PIKIAIIGRPNVGKSSLIN------AILGEE-----RVIVSDIAGTTRDSIDIEFERDGR 226

Query: 201 NIYVLDTPGILP-PEIHD-VEVCSKLALTGAIGDSFV------GGKELAQYFLGILNFSD 252
              ++DT GI    +I + VE  S      AI  + V        + +++  L I    +
Sbjct: 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIE 286

Query: 253 EYKKWAKFSIN 263
           E  +     +N
Sbjct: 287 EAGRGIVIVVN 297

Length = 444

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 14/69 (20%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IY-SLKIASHPN 201
            V ++G PNVGKS L N L   GR         R A VS  PG T+D IY   +      
Sbjct: 5   VVAIVGRPNVGKSTLFNRL--TGR---------RIAIVSDTPGVTRDRIYGDAEWLGRE- 52

Query: 202 IYVLDTPGI 210
             ++DT G+
Sbjct: 53  FILIDTGGL 61

Length = 444

>gnl|CDD|206726 cd04163, Era, E

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 16/73 (21%)

Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN--- 201
           V ++G PNVGKS L N+L  +G+       K+  + VSP+P  T++     I +  +   
Sbjct: 6   VAIIGRPNVGKSTLLNAL--VGQ-------KI--SIVSPKPQTTRNR-IRGIYTDDDAQI 53

Query: 202 IYVLDTPGILPPE 214
           I+V DTPGI  P+
Sbjct: 54  IFV-DTPGIHKPK 65

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 14/86 (16%)

Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP---NIY 203
           ++G   VGKS+L N+L  +G              VS  PG T+D              + 
Sbjct: 2   VVGRGGVGKSSLLNAL--LGGE---------VGEVSDVPGTTRDPDVYVKELDKGKVKLV 50

Query: 204 VLDTPGILPPEIHDVEVCSKLALTGA 229
           ++DTPG+        E  ++L L GA
Sbjct: 51  LVDTPGLDEFGGLGREELARLLLRGA 76

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 14/69 (20%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSL-KIASHPN 201
            V ++G PNVGKS L N      R+T       R A VS  PG T+D  Y   +      
Sbjct: 1   VVAIVGRPNVGKSTLFN------RLT-----GKRDAIVSDTPGVTRDRKYGDAEWGGRE- 48

Query: 202 IYVLDTPGI 210
             ++DT GI
Sbjct: 49  FILIDTGGI 57

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 18/101 (17%)

Query: 115 DNVKEFLKFLQAHVRNLRKSDYDASS---DTVTVMLLGIPNVGKSALANSLHQIGRITAA 171
           + ++E L+ L A +  L  +         + + V+++G PNVGKS+L N+L  +GR    
Sbjct: 188 EKIREKLEELIAELDELL-ATAKQGKILREGLKVVIIGRPNVGKSSLLNAL--LGR---- 240

Query: 172 EKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGI 210
           ++     A V+   G T+D+    + +   P + ++DT GI
Sbjct: 241 DR-----AIVTDIAGTTRDVIEEDINLNGIP-VRLVDTAGI 275

Length = 454

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 42.3 bits (101), Expect = 2e-04
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSL-KIASHPN 201
            V ++G PNVGKS L N      R+T    GK R A V+  PG T+D IY   +      
Sbjct: 3   VVAIVGRPNVGKSTLFN------RLT----GK-RDAIVADTPGVTRDRIYGEAEWLGRE- 50

Query: 202 IYVLDTPGILPPE 214
             ++DT GI P +
Sbjct: 51  FILIDTGGIEPDD 63

Length = 435

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 14/72 (19%)

Query: 141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIAS 198
           + + V++ G PNVGKS+L N+L   GR    ++     A VS   G T+D+    + +  
Sbjct: 2   EGIKVVIAGKPNVGKSSLLNAL--AGR----DR-----AIVSDIAGTTRDVIEEEIDLGG 50

Query: 199 HPNIYVLDTPGI 210
            P + ++DT G+
Sbjct: 51  IP-VRLIDTAGL 61

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only]

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 20/113 (17%)

Query: 119 EFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH 178
           EFL+  + H++ L   D     D  T+++ G PNVGKS+L        ++T A+      
Sbjct: 149 EFLRKARDHLKKLPAID----PDLPTIVVAGYPNVGKSSLVR------KLTTAK------ 192

Query: 179 ATVSPQPGETKDIY-SLKIASHPNIYVLDTPGIL--P-PEIHDVEVCSKLALT 227
             V+P P  TK I+       +  I V+DTPG+L  P  E +++E  + LAL 
Sbjct: 193 PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245

Length = 346

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 28/94 (29%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-------SLKI 196
           T+++ G PNVGKS+L N      ++T A+        V+P P  TK ++        L+ 
Sbjct: 2   TLVIAGYPNVGKSSLVN------KLTRAK------PEVAPYPFTTKSLFVGHFDYKYLRW 49

Query: 197 ASHPNIYVLDTPGIL--P-PEIHDVEVCSKLALT 227
                  V+DTPGIL  P  E + +E+ +  AL 
Sbjct: 50  Q------VIDTPGILDRPLEERNTIEMQAITALA 77

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 40.1 bits (95), Expect = 9e-04
 Identities = 46/205 (22%), Positives = 70/205 (34%), Gaps = 48/205 (23%)

Query: 25  GGWYG------PHMAA-ATRAIADRMPLVDIILEVRDARIPFSSE----FDQLRNHHPFS 73
           GG           +   A  AI +     D+IL V D R   + E       LR     S
Sbjct: 55  GGIEEDDDGLDKQIREQAEIAIEE----ADVILFVVDGREGLTPEDEEIAKWLRK----S 106

Query: 74  SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVN-------SHNKDNVKEFLKFLQA 126
               ILV NK+D     +      F+      S G          H    + + L  +  
Sbjct: 107 GKPVILVANKID--GKKEDAVAAEFY------SLGFGEPIPISAEHG-RGIGDLLDAILE 157

Query: 127 HVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG 186
            +    + + +     + + ++G PNVGKS L N       +   E+       VS   G
Sbjct: 158 LLPE-EEEEEEEEDGPIKIAIIGRPNVGKSTLVN------ALLGEER-----VIVSDIAG 205

Query: 187 ETKD-IYSLKIASHPNIYVLDTPGI 210
            T+D I      +     ++DT GI
Sbjct: 206 TTRDSIDIPFERNGKKYTLIDTAGI 230

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 14/70 (20%)

Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASHP 200
           + V++ G PNVGKS+L N+L  +G     E+     A V+   G T+D+    + +   P
Sbjct: 216 LKVVIAGRPNVGKSSLLNAL--LGE----ER-----AIVTDIAGTTRDVIEEHINLDGIP 264

Query: 201 NIYVLDTPGI 210
            + ++DT GI
Sbjct: 265 -LRLIDTAGI 273

Length = 449

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 38.9 bits (92), Expect = 0.002
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 47  DIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS 106
           D++L V DA  P + E D++           I+VLNK DL         I   ++   P 
Sbjct: 296 DLVLLVLDASEPLTEEDDEILEELK--DKPVIVVLNKADLTGE------IDLEEENGKPV 347

Query: 107 FGVNSHNKDNVKEFLKFLQAHVRN 130
             +++   + + E  + ++     
Sbjct: 348 IRISAKTGEGIDELREAIKELAFG 371

Length = 449

>gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 43/181 (23%)

Query: 77  RILVLNKMDLASPTQF-KEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD 135
            I+VLNK+DL       KE +  +          +S N+D +KE    L   ++N     
Sbjct: 70  PIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKE----LIEALQNRI--- 122

Query: 136 YDASSDTVTVMLLGIPNVGKSALAN----SLHQIGRITAAEKGKLRHATVSPQPGETKDI 191
                   +V   G   VGKS+L N    S+ Q     +++ G  +H T           
Sbjct: 123 --------SVF-AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTT---------- 163

Query: 192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS 251
           +      H  + + DTPG     +  +E          +   FV      + +LG+  F 
Sbjct: 164 HVELFHFHGGL-IADTPGFNEFGLWHLE-------PEQLTQGFVE----FRDYLGLCKFR 211

Query: 252 D 252
           D
Sbjct: 212 D 212

Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 16/69 (23%)

Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN--- 201
           V ++G PNVGKS L N+L            K+  + VSP+P  T++     I +  N   
Sbjct: 9   VAIIGRPNVGKSTLLNALV---------GQKI--SIVSPKPQTTRNRIR-GIVTTDNAQI 56

Query: 202 IYVLDTPGI 210
           I+V DTPGI
Sbjct: 57  IFV-DTPGI 64

Length = 298

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG--ETKDIYSLKIASHPN 201
           TV L+G P+VGKS L N L      T +E       T+ P PG  E K            
Sbjct: 65  TVALVGFPSVGKSTLLNKLTN----TKSEVADYPFTTLEPVPGMLEYKGAQ--------- 111

Query: 202 IYVLDTPGILP 212
           I +LD PGI+ 
Sbjct: 112 IQLLDLPGIIE 122

Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	100.0
PRK09563	287	rbgA GTPase YlqF; Reviewed	100.0
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	100.0
COG1161	322	Predicted GTPases [General function prediction onl	100.0
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	100.0
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.97
KOG2484	435	consensus GTPase [General function prediction only	99.96
PRK12289	352	GTPase RsgA; Reviewed	99.96
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.96
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.95
PRK12288	347	GTPase RsgA; Reviewed	99.95
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.95
COG1160	444	Predicted GTPases [General function prediction onl	99.95
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.95
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.94
PRK00098	298	GTPase RsgA; Reviewed	99.94
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.94
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.94
COG1162	301	Predicted GTPases [General function prediction onl	99.94
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.93
KOG2423	572	consensus Nucleolar GTPase [General function predi	99.93
PRK13796	365	GTPase YqeH; Provisional	99.92
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK01889	356	GTPase RsgA; Reviewed	99.85
PRK03003	472	GTP-binding protein Der; Reviewed	99.85
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.53
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.46
COG1159	298	Era GTPase [General function prediction only]	99.46
COG1084	346	Predicted GTPase [General function prediction only	99.44
COG0218	200	Predicted GTPase [General function prediction only	99.42
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.36
COG1160	444	Predicted GTPases [General function prediction onl	99.31
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.3
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.19
COG1163	365	DRG Predicted GTPase [General function prediction	99.15
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.15
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.14
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.11
PRK12298	390	obgE GTPase CgtA; Reviewed	99.1
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.09
PTZ00258	390	GTP-binding protein; Provisional	99.04
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.04
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.01
PRK00089	292	era GTPase Era; Reviewed	99.01
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.01
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.99
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.98
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.98
PRK12299	335	obgE GTPase CgtA; Reviewed	98.98
PRK09601	364	GTP-binding protein YchF; Reviewed	98.98
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.95
PRK15494	339	era GTPase Era; Provisional	98.95
COG1159	298	Era GTPase [General function prediction only]	98.94
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.94
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.93
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.93
PRK12297	424	obgE GTPase CgtA; Reviewed	98.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.9
PRK04213	201	GTP-binding protein; Provisional	98.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.89
PRK11058	426	GTPase HflX; Provisional	98.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.88
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.88
PRK12296	500	obgE GTPase CgtA; Reviewed	98.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.87
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.86
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.86
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.83
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.83
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.82
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.81
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.8
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.8
COG0536	369	Obg Predicted GTPase [General function prediction	98.8
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.77
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.77
PRK00089	292	era GTPase Era; Reviewed	98.76
COG2262	411	HflX GTPases [General function prediction only]	98.76
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.75
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.75
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.75
COG3596	296	Predicted GTPase [General function prediction only	98.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.74
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.74
cd00881	189	GTP_translation_factor GTP translation factor fami	98.74
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.73
PRK09602	396	translation-associated GTPase; Reviewed	98.73
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.72
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.72
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.72
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.72
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.71
KOG1249	572	consensus Predicted GTPases [General function pred	98.71
COG0486	454	ThdF Predicted GTPase [General function prediction	98.7
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.7
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.69
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.69
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.69
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.68
PLN00223	181	ADP-ribosylation factor; Provisional	98.68
PRK15494	339	era GTPase Era; Provisional	98.67
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.67
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.67
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.67
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.66
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.65
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.65
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.64
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.64
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.64
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.64
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.64
PTZ00099	176	rab6; Provisional	98.63
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.63
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.63
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.62
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.62
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.62
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.62
PRK09866	741	hypothetical protein; Provisional	98.62
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.61
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.61
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.61
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.61
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.59
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.59
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.59
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.58
PTZ00133	182	ADP-ribosylation factor; Provisional	98.58
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.58
PRK12296	500	obgE GTPase CgtA; Reviewed	98.57
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.57
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.56
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.56
PRK00093	435	GTP-binding protein Der; Reviewed	98.56
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.56
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.56
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.56
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.56
PRK12299	335	obgE GTPase CgtA; Reviewed	98.56
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.55
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.55
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.55
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.54
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.54
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.54
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.54
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.53
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.53
PTZ00369	189	Ras-like protein; Provisional	98.53
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.52
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.52
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.52
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.51
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.51
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.51
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.51
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.5
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.5
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.5
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.5
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.5
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.49
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.49
PRK04213	201	GTP-binding protein; Provisional	98.48
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.48
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.48
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.48
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.48
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.47
PRK12736	394	elongation factor Tu; Reviewed	98.47
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.47
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.47
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.47
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.47
PRK05433	600	GTP-binding protein LepA; Provisional	98.46
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.46
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.46
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.45
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.44
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.44
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.44
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.44
PRK12298	390	obgE GTPase CgtA; Reviewed	98.44
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.43
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.43
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.42
PRK12297	424	obgE GTPase CgtA; Reviewed	98.42
PRK11058	426	GTPase HflX; Provisional	98.42
PRK03003	472	GTP-binding protein Der; Reviewed	98.42
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.42
PRK13768	253	GTPase; Provisional	98.42
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.41
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.4
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.4
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.4
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.4
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.4
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.4
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.39
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.39
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.39
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.39
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.39
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.39
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.39
PLN03118	211	Rab family protein; Provisional	98.38
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.38
CHL00071	409	tufA elongation factor Tu	98.38
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.38
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.38
PLN03118	211	Rab family protein; Provisional	98.37
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.36
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.36
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.36
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.35
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.35
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.35
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.35
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.35
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.35
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.35
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.35
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.34
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.34
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.32
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.32
KOG2486	320	consensus Predicted GTPase [General function predi	98.32
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.32
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.32
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.32
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.31
COG0218	200	Predicted GTPase [General function prediction only	98.31
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.31
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.31
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.3
COG2229	187	Predicted GTPase [General function prediction only	98.3
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.3
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.3
PLN03110	216	Rab GTPase; Provisional	98.3
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.3
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.29
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.29
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.29
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.29
PRK12735	396	elongation factor Tu; Reviewed	98.29
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.29
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.28
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.28
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.28
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.28
PRK00049	396	elongation factor Tu; Reviewed	98.27
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.27
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.27
CHL00189	742	infB translation initiation factor 2; Provisional	98.26
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.26
PRK12317	425	elongation factor 1-alpha; Reviewed	98.26
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.25
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.25
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.25
cd00881	189	GTP_translation_factor GTP translation factor fami	98.25
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.24
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.24
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.24
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.24
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.23
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.23
COG2262	411	HflX GTPases [General function prediction only]	98.23
PLN03127	447	Elongation factor Tu; Provisional	98.23
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.22
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.22
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.22
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.21
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.21
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.21
CHL00071	409	tufA elongation factor Tu	98.21
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.2
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.2
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.2
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.2
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.2
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.2
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.19
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.19
PRK05306	787	infB translation initiation factor IF-2; Validated	98.19
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.19
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.19
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.19
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.18
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.18
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.18
KOG1145	683	consensus Mitochondrial translation initiation fac	98.18
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.17
PRK12317	425	elongation factor 1-alpha; Reviewed	98.17
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.17
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.17
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.17
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.16
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.16
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.16
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.15
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.15
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.15
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.15
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.15
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.15
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.14
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.14
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.14
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.14
PLN03108	210	Rab family protein; Provisional	98.14
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.14
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.13
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.13
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.12
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.12
PRK12735	396	elongation factor Tu; Reviewed	98.12
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.12
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.12
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.12
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.11
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.11
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	98.11
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.11
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.1
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.1
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.1
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.1
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.1
PRK14845	1049	translation initiation factor IF-2; Provisional	98.1
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.09
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.09
PRK10218	607	GTP-binding protein; Provisional	98.09
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.09
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.09
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.08
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	98.08
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.08
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.08
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.08
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.08
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.07
PRK00049	396	elongation factor Tu; Reviewed	98.07
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.07
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.06
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	98.06
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.05
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.05
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	98.05
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.05
PTZ00141	446	elongation factor 1- alpha; Provisional	98.05
PRK04004	586	translation initiation factor IF-2; Validated	98.05
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.04
PTZ00133	182	ADP-ribosylation factor; Provisional	98.04
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.04
PLN03126	478	Elongation factor Tu; Provisional	98.04
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.04
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.04
COG0536	369	Obg Predicted GTPase [General function prediction	98.03
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.03
PLN03110	216	Rab GTPase; Provisional	98.03
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.03
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.02
PRK12736	394	elongation factor Tu; Reviewed	98.01
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.99
PLN03127	447	Elongation factor Tu; Provisional	97.99
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.98
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.98
PTZ00369	189	Ras-like protein; Provisional	97.98
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.98
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	97.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.97
PLN03108	210	Rab family protein; Provisional	97.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.96
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.94
PLN00043	447	elongation factor 1-alpha; Provisional	97.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.92
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.92
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.91
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.91
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.9
CHL00189	742	infB translation initiation factor 2; Provisional	97.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.9
PRK05306	787	infB translation initiation factor IF-2; Validated	97.9
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.89
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.89
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	97.89
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	97.87
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.87
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.87
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.85
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.85
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.84
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.83
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.83
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	97.83
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.83
PLN00223	181	ADP-ribosylation factor; Provisional	97.82
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.8
KOG0410	410	consensus Predicted GTP binding protein [General f	97.8
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.8
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.8
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.79
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	97.79
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.78
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.78
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.78
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.77
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.77
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.76
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.76
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.75
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.75
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.73
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.72
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.71
PRK00007	693	elongation factor G; Reviewed	97.71
PRK12739	691	elongation factor G; Reviewed	97.7
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.69
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.68
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.67
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.66
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.66
COG1100	219	GTPase SAR1 and related small G proteins [General	97.65
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.64
PLN03126	478	Elongation factor Tu; Provisional	97.62
PRK12739	691	elongation factor G; Reviewed	97.62
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.62
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.62
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.62
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.62
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.62
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.61
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.61
PRK04004	586	translation initiation factor IF-2; Validated	97.6
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.6
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	97.59
PRK09866	741	hypothetical protein; Provisional	97.59
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.58
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.58
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.58
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.56
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.56
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.55
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.55
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.55
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	97.54
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.52
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.49
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.49
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.46
PRK12740	668	elongation factor G; Reviewed	97.46
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.44
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.42
KOG1249	572	consensus Predicted GTPases [General function pred	97.41
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.41
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.4
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.39
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.36
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	97.34
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.34
PRK13351	687	elongation factor G; Reviewed	97.34
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.32
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.32
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.32
PRK00007	693	elongation factor G; Reviewed	97.32
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.32
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.29
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.28
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.28
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.22
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.22
PTZ00141	446	elongation factor 1- alpha; Provisional	97.2
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.2
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.19
PLN00023	334	GTP-binding protein; Provisional	97.18
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.18
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.18
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	97.17

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=100.00  E-value=1.8e-43  Score=313.00  Aligned_cols=249  Identities=39%  Similarity=0.618  Sum_probs=203.2

Q ss_pred             hHHHHHhhhcceecccCC---CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEec
Q 022351            7 SLFKLAREIGTAVSQKKG---GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNK   83 (298)
Q Consensus         7 ~~~~~~~~~g~~~~~~~~---~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK   83 (298)
                      -+|.+|+++|.+.+-..+   .+||||||+++++++++.++.+|+||+|.|||.|++++++.+.+++.  .++.|||+||
T Consensus         5 ~~~s~~~~~~~~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK   82 (335)
T KOG2485|consen    5 KTWSIAREAGDAVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNK   82 (335)
T ss_pred             HHHHHHHHhhhcccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEec
Confidence            579999999887765554   79999999999999999999999999999999999999999998854  8999999999


Q ss_pred             CCCCChhhHHHHHHHHHccCC-CEEEEecCCCc--CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHH
Q 022351           84 MDLASPTQFKEWITFFDQQNC-PSFGVNSHNKD--NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALAN  160 (298)
Q Consensus        84 ~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~~--gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN  160 (298)
                      +||+++.+....+++++..+. .++..+|....  ++..++..+.....++.+. ........+++|+|.||||||||||
T Consensus        83 ~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~-irt~~~~~~vmVvGvPNVGKSsLIN  161 (335)
T KOG2485|consen   83 MDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRF-IRTLNSEYNVMVVGVPNVGKSSLIN  161 (335)
T ss_pred             ccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHh-hcccCCceeEEEEcCCCCChHHHHH
Confidence            999997777788888864443 34444444333  3555555444333332110 0113467899999999999999999


Q ss_pred             HHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHH
Q 022351          161 SLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKE  239 (298)
Q Consensus       161 ~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~  239 (298)
                      ++.....      .+.+.++++..||+|+.+.. +++...+.+|++||||++.|...+.|.+++||++|+++++++.+..
T Consensus       162 a~r~~~L------rk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~  235 (335)
T KOG2485|consen  162 ALRNVHL------RKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEET  235 (335)
T ss_pred             HHHHHHh------hhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHH
Confidence            9974211      23588999999999999986 8888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCchhHHHhhcccC
Q 022351          240 LAQYFLGILNFSDEYKKWAKFSINQ  264 (298)
Q Consensus       240 ~~~~~l~~l~~~~~~~~~~~~~~~~  264 (298)
                      +|||+|+++|....+.++..+..-.
T Consensus       236 ~adylL~~lN~~~~~~y~~~l~~~~  260 (335)
T KOG2485|consen  236 IADYLLYLLNSHSDFSYVKDLKPGS  260 (335)
T ss_pred             HHHHHHHHHhccCcchhHHHhccCC
Confidence            9999999999998887776665544

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=100.00  E-value=1.4e-41  Score=309.12  Aligned_cols=234  Identities=35%  Similarity=0.525  Sum_probs=196.2

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC  104 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~  104 (298)
                      ++||||||+++++++++.++.+|+||+|+|++.|.++.++.+..++.  ++|+++|+||+||.+....+.|.++++..+.
T Consensus         4 ~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~   81 (287)
T PRK09563          4 IQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQGI   81 (287)
T ss_pred             CcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence            79999999999999999999999999999999999988887777643  7999999999999877667789888865567


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHhhhhcc--CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD--YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS  182 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~--~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~  182 (298)
                      +++++|+.++.|+++|++.+.+.+++.....  .......++++++|.||||||||||+|.+           .+.+.++
T Consensus        82 ~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~-----------~~~~~~~  150 (287)
T PRK09563         82 KALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG-----------KKIAKTG  150 (287)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhc-----------CCccccC
Confidence            7899999999999999999988876532110  01124568999999999999999999983           5667899


Q ss_pred             CCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc
Q 022351          183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI  262 (298)
Q Consensus       183 ~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  262 (298)
                      +.||+|++.+.+.+.  .+++|+||||+..|...+.+.+.++|++|+|+++.++...+++|++++++..........+..
T Consensus       151 ~~~g~T~~~~~~~~~--~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~y~~  228 (287)
T PRK09563        151 NRPGVTKAQQWIKLG--KGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKERYKL  228 (287)
T ss_pred             CCCCeEEEEEEEEeC--CcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHHHhCC
Confidence            999999999877664  359999999999999999999999999999999999999999999999998776555555554


Q ss_pred             c--CCCccccccc
Q 022351          263 N--QINKPLTLHH  273 (298)
Q Consensus       263 ~--~~~~~~~~~~  273 (298)
                      +  ..++.++|+.
T Consensus       229 ~~~~~~~~~~l~~  241 (287)
T PRK09563        229 DELPEDILELLEA  241 (287)
T ss_pred             CCCCCCHHHHHHH
Confidence            3  2355566653

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=100.00  E-value=2.6e-41  Score=305.73  Aligned_cols=234  Identities=33%  Similarity=0.524  Sum_probs=195.5

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC  104 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~  104 (298)
                      ++||||||+++++++.+.++.+|+|++|+|++.|.++.++.+.+++  .++|+++|+||+||.+.+....|.++++..+.
T Consensus         1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~   78 (276)
T TIGR03596         1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEEKGI   78 (276)
T ss_pred             CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999999998888877765  37899999999999877667788888865566


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHhhhhc--cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKS--DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS  182 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~--~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~  182 (298)
                      +++++||.++.|+++|++.+.+.+++....  ........++++++|.||||||||||+|.           +.+.+.++
T Consensus        79 ~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~-----------~~~~~~~~  147 (276)
T TIGR03596        79 KALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLA-----------GKKVAKVG  147 (276)
T ss_pred             eEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHh-----------CCCccccC
Confidence            789999999999999999998877653210  00112356899999999999999999998           35668889


Q ss_pred             CCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc
Q 022351          183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI  262 (298)
Q Consensus       183 ~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  262 (298)
                      +.||+|+..+.+.+.  .+++|+||||+..|.+.+.+.+.++|++|+|+++.++..+.++|++++++..........+..
T Consensus       148 ~~~g~T~~~~~~~~~--~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~i  225 (276)
T TIGR03596       148 NRPGVTKGQQWIKLS--DGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPERLKERYKL  225 (276)
T ss_pred             CCCCeecceEEEEeC--CCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHHHHHHhCc
Confidence            999999999887764  359999999999999999999999999999999999999999999999998876554455554


Q ss_pred             cC--CCccccccc
Q 022351          263 NQ--INKPLTLHH  273 (298)
Q Consensus       263 ~~--~~~~~~~~~  273 (298)
                      +.  .++.++|+.
T Consensus       226 ~~~~~~~~~~l~~  238 (276)
T TIGR03596       226 DELPEDIVELLEA  238 (276)
T ss_pred             CCCCCCHHHHHHH
Confidence            42  355566663

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=2.3e-35  Score=271.64  Aligned_cols=209  Identities=35%  Similarity=0.545  Sum_probs=178.8

Q ss_pred             CCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc
Q 022351           23 KGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ  102 (298)
Q Consensus        23 ~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~  102 (298)
                      ..++||||||.++++++.+.++.+|+|++|+||++|.++.++.+.++.  .+++.++|+||+||++....++|.+++...
T Consensus        12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v--~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~   89 (322)
T COG1161          12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIV--KEKPKLLVLNKADLAPKEVTKKWKKYFKKE   89 (322)
T ss_pred             ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHH--ccCCcEEEEehhhcCCHHHHHHHHHHHHhc
Confidence            357999999999999999999999999999999999999999998884  467779999999999999999999999765


Q ss_pred             -CCCEEEEecCCCcCHHHHHHHHHH----HHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc
Q 022351          103 -NCPSFGVNSHNKDNVKEFLKFLQA----HVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR  177 (298)
Q Consensus       103 -~~~vi~iSa~~~~gi~~L~~~l~~----~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~  177 (298)
                       +...+.+++..+.+...+...+..    .+..+.+.  .......++++||.||||||||||+|+           +.+
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~v~vvG~PNVGKSslIN~L~-----------~k~  156 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKK--GLLKRKIRVGVVGYPNVGKSTLINRLL-----------GKK  156 (322)
T ss_pred             CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhc--CCCccceEEEEEcCCCCcHHHHHHHHh-----------ccc
Confidence             567889999988887777754432    22222211  112345899999999999999999999           356


Q ss_pred             ceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC-hhhhhhhhhhcccccCCCChHHHHHHHHHHH
Q 022351          178 HATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD-VEVCSKLALTGAIGDSFVGGKELAQYFLGIL  248 (298)
Q Consensus       178 ~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~-~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l  248 (298)
                      .+++|+.||+|++.+.+++..+  ++|+||||+..|...+ ...+.+++..++|++.......++.+++..+
T Consensus       157 ~~~~s~~PG~Tk~~q~i~~~~~--i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~  226 (322)
T COG1161         157 VAKTSNRPGTTKGIQWIKLDDG--IYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGL  226 (322)
T ss_pred             ceeeCCCCceecceEEEEcCCC--eEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhh
Confidence            7999999999999999988654  9999999999999988 8889999999999999999999988888766

>cd01856 YlqF YlqF

Probab=100.00  E-value=6.6e-32  Score=227.65  Aligned_cols=170  Identities=42%  Similarity=0.693  Sum_probs=137.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCE
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS  106 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v  106 (298)
                      ||||||+++++++++.++++|+|++|+|++.|....+..+...+  .++|+++|+||+|+.+.+....|.++++..+..+
T Consensus         1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~v   78 (171)
T cd01856           1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKV   78 (171)
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeE
Confidence            99999999999999999999999999999988777666555543  4689999999999987666667777776555678


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHhhhhc-cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRNLRKS-DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP  185 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~~~~~-~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p  185 (298)
                      +.+||+++.|+++|.+.+.+.++...+. ........++++++|.||||||||+|+|.+           .....+++.|
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~  147 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRG-----------KKVAKVGNKP  147 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCC
Confidence            9999999999999999998876421110 001224457999999999999999999993           3456889999


Q ss_pred             CeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          186 GETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       186 g~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      |+|+..+.+.+.  ..++++||||+.
T Consensus       148 ~~T~~~~~~~~~--~~~~~iDtpG~~  171 (171)
T cd01856         148 GVTKGIQWIKIS--PGIYLLDTPGIL  171 (171)
T ss_pred             CEEeeeEEEEec--CCEEEEECCCCC
Confidence            999999887664  469999999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=99.97  E-value=1.3e-29  Score=210.57  Aligned_cols=153  Identities=25%  Similarity=0.455  Sum_probs=124.4

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccC-CCEEEEecCCCc
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQN-CPSFGVNSHNKD  115 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~-~~vi~iSa~~~~  115 (298)
                      +++.++.+|+|++|+|++.|+...+..+.+++..  .++|+++|+||+|+.+++....|...+.+.. ..++++||+.+.
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence            5678999999999999999987777777665432  3589999999999998877778888885432 235789999999


Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE
Q 022351          116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK  195 (298)
Q Consensus       116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~  195 (298)
                      |+++|++.+.+.....      ......+++++|.||||||||||+|+           +.+.+.+++.||+|++.+.+.
T Consensus        82 ~~~~L~~~l~~~~~~~------~~~~~~~v~~~G~~nvGKStliN~l~-----------~~~~~~~~~~~g~T~~~~~~~  144 (157)
T cd01858          82 GKGSLIQLLRQFSKLH------SDKKQISVGFIGYPNVGKSSIINTLR-----------SKKVCKVAPIPGETKVWQYIT  144 (157)
T ss_pred             cHHHHHHHHHHHHhhh------ccccceEEEEEeCCCCChHHHHHHHh-----------cCCceeeCCCCCeeEeEEEEE
Confidence            9999999998765421      11346789999999999999999998           357789999999999988776


Q ss_pred             EccCCCEEEEeCCCC
Q 022351          196 IASHPNIYVLDTPGI  210 (298)
Q Consensus       196 ~~~~~~~~liDTPGi  210 (298)
                      ..  .+++|+||||+
T Consensus       145 ~~--~~~~liDtPGi  157 (157)
T cd01858         145 LM--KRIYLIDCPGV  157 (157)
T ss_pred             cC--CCEEEEECcCC
Confidence            53  35999999997

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2484 consensus GTPase [General function prediction only]

Probab=99.96  E-value=8.1e-30  Score=232.19  Aligned_cols=222  Identities=24%  Similarity=0.353  Sum_probs=169.6

Q ss_pred             cccCCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC--CCCCCcEEEEEecCCCCChhhHHHHHH
Q 022351           20 SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH--PFSSSRRILVLNKMDLASPTQFKEWIT   97 (298)
Q Consensus        20 ~~~~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l--~~~~k~~IiVlNK~DL~~~~~~~~~~~   97 (298)
                      .+.....|.+++.....+.+++.++.+|+||+|+|||+|++++..+..+++  ..+++.+|+|+||+||+|.+.+++|+.
T Consensus       121 ~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~  200 (435)
T KOG2484|consen  121 EEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLV  200 (435)
T ss_pred             HHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHH
Confidence            445567899999888899999999999999999999999999998887764  235699999999999999999999999


Q ss_pred             HHHccCCCEEEEecCCC-------------cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351           98 FFDQQNCPSFGVNSHNK-------------DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~-------------~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+++.+..+.+.++...             .|.+.++..+.++-..      ..-...++++|+|.|||||||+||+|.+
T Consensus       201 YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~------~~lk~sIrvGViG~PNVGKSSvINsL~~  274 (435)
T KOG2484|consen  201 YLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRK------GELKTSIRVGIIGYPNVGKSSVINSLKR  274 (435)
T ss_pred             HHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccc------cccCcceEeeeecCCCCChhHHHHHHHH
Confidence            99766655554433221             1344444444332111      1124578999999999999999999983


Q ss_pred             hcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccC-CCChHHHHHH
Q 022351          165 IGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDS-FVGGKELAQY  243 (298)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~-~~~~~~~~~~  243 (298)
                                 .+.+.+++.||+|+.++.+++..  ++.|+|.||+..+...+.+   .+++..|++.+ ..++...+.+
T Consensus       275 -----------~k~C~vg~~pGvT~smqeV~Ldk--~i~llDsPgiv~~~~~~~~---~~~Lrn~~~i~~~~dp~~~v~~  338 (435)
T KOG2484|consen  275 -----------RKACNVGNVPGVTRSMQEVKLDK--KIRLLDSPGIVPPSIDEKD---ALALRNCIPIGKVADPVTPVSC  338 (435)
T ss_pred             -----------hccccCCCCccchhhhhheeccC--CceeccCCceeecCCCccc---hhhhhcccccccccCccchHHH
Confidence                       67799999999999999987654  5999999999998776544   68889999877 5566666777


Q ss_pred             HHHHHccCCchhHHHhhccc
Q 022351          244 FLGILNFSDEYKKWAKFSIN  263 (298)
Q Consensus       244 ~l~~l~~~~~~~~~~~~~~~  263 (298)
                      +|..+....-...|......
T Consensus       339 iL~~~~~e~~~~~Y~~~~~~  358 (435)
T KOG2484|consen  339 ILKRCSKESRSVLYNIPSIR  358 (435)
T ss_pred             HHHHhhHHHHHHHhcCCCcc
Confidence            77766654434444443333

>PRK12289 GTPase RsgA; Reviewed

Probab=99.96  E-value=2.6e-29  Score=233.17  Aligned_cols=184  Identities=22%  Similarity=0.239  Sum_probs=145.2

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      .+..+.++|.|++|+|+..|.... ..+.+++   ...++|+++|+||+||++.+..+.|.+.|...+++++++||.++.
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~  161 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGI  161 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence            345689999999999998764322 1222222   235899999999999998777788888887778899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-------ee
Q 022351          116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-------ET  188 (298)
Q Consensus       116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-------~T  188 (298)
                      |+++|++.+..                ..++|+|.||||||||||+|++           .....++..+|       ||
T Consensus       162 GI~eL~~~L~~----------------ki~v~iG~SgVGKSSLIN~L~~-----------~~~~~t~~vs~~~~rGrHTT  214 (352)
T PRK12289        162 GLEALLEQLRN----------------KITVVAGPSGVGKSSLINRLIP-----------DVELRVGKVSGKLGRGRHTT  214 (352)
T ss_pred             CHHHHhhhhcc----------------ceEEEEeCCCCCHHHHHHHHcC-----------ccccccccccCCCCCCCCcC
Confidence            99998888742                1479999999999999999983           44566677777       88


Q ss_pred             eeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHc----cCCchhHHHhhcccC
Q 022351          189 KDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN----FSDEYKKWAKFSINQ  264 (298)
Q Consensus       189 ~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~----~~~~~~~~~~~~~~~  264 (298)
                      ++.+.+.+..+  .+|+|||||..+++.                  +++.+++.||.++-.    ....|++|.|.++|+
T Consensus       215 ~~~~l~~l~~g--~~liDTPG~~~~~l~------------------~~~~~l~~~F~e~~~~~~~~~CrF~dC~H~~EPg  274 (352)
T PRK12289        215 RHVELFELPNG--GLLADTPGFNQPDLD------------------CSPRELAHYFPEARQRLAQGNCQFNDCLHRDEPN  274 (352)
T ss_pred             ceeEEEECCCC--cEEEeCCCccccccc------------------cCHHHHHhhHHHHHHhHhhCceEccCCccCCCCC
Confidence            98888776543  599999999998873                  246677888877765    357899999999999


Q ss_pred             CCcccc
Q 022351          265 INKPLT  270 (298)
Q Consensus       265 ~~~~~~  270 (298)
                      |.|+.-
T Consensus       275 CaV~~~  280 (352)
T PRK12289        275 CAVRGD  280 (352)
T ss_pred             hhhhhh
Confidence            999863

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.96  E-value=3.4e-29  Score=222.72  Aligned_cols=193  Identities=21%  Similarity=0.249  Sum_probs=146.3

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhH-HHHHHHHHccCCCEEEEecCCCc
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQF-KEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      +.++.++|.++.|+|+++|..+.+. +.+++   ...+.|+++|+||+||.+.... .++.+.+...+++++.+||+++.
T Consensus        31 r~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~  109 (245)
T TIGR00157        31 RPIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD  109 (245)
T ss_pred             CcccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence            3579999999999999988755432 22222   2367999999999999764433 36777776778899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec----CCCCeeeee
Q 022351          116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS----PQPGETKDI  191 (298)
Q Consensus       116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~----~~pg~T~~~  191 (298)
                      |+++|.+.+.+                ..++++|.||||||||||+|++...        .+...++    ....||++.
T Consensus       110 gi~eLf~~l~~----------------~~~~~~G~sgvGKStLiN~L~~~~~--------~~t~~i~~~~~~G~hTT~~~  165 (245)
T TIGR00157       110 GLKELIEALQN----------------RISVFAGQSGVGKSSLINALDPSVK--------QQVNDISSKLGLGKHTTTHV  165 (245)
T ss_pred             hHHHHHhhhcC----------------CEEEEECCCCCCHHHHHHHHhhhhh--------ccccceeccCCCCCCcCCce
Confidence            99998887641                2689999999999999999984110        1111222    223478888


Q ss_pred             EEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHcc--CCchhHHHhhcccCCCccc
Q 022351          192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF--SDEYKKWAKFSINQINKPL  269 (298)
Q Consensus       192 ~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~  269 (298)
                      +.+.+.   +.+|+|||||..+++.+                 +++++++.||.++...  ...|++|.|.++|+|+|++
T Consensus       166 ~l~~l~---~~~liDtPG~~~~~l~~-----------------~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~  225 (245)
T TIGR00157       166 ELFHFH---GGLIADTPGFNEFGLWH-----------------LEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQ  225 (245)
T ss_pred             EEEEcC---CcEEEeCCCccccCCCC-----------------CCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHH
Confidence            887762   36999999999999876                 4567788888887664  4688999999999999999


Q ss_pred             ccccccCC
Q 022351          270 TLHHKADQ  277 (298)
Q Consensus       270 ~~~~~~~~  277 (298)
                      .++...-.
T Consensus       226 a~~~g~i~  233 (245)
T TIGR00157       226 AVEQGEIS  233 (245)
T ss_pred             HHHcCCCC
Confidence            98865443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.95  E-value=2.9e-27  Score=193.20  Aligned_cols=138  Identities=30%  Similarity=0.463  Sum_probs=117.0

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCC--CCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFS--SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~--~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      ++.+++.++++|+|++|+|++.|....+..+.+++...  ++|+++|+||+|+.+++....|.++++..+.+++++||.+
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence            46778899999999999999999888877777665433  8999999999999887777788888877778899999987


Q ss_pred             CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE
Q 022351          114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS  193 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~  193 (298)
                      +.+                           +++++|.||||||||+|+|++           .+...++..||+|++.+.
T Consensus        82 ~~~---------------------------~~~~~G~~~vGKstlin~l~~-----------~~~~~~~~~~~~~~~~~~  123 (141)
T cd01857          82 ENA---------------------------TIGLVGYPNVGKSSLINALVG-----------KKKVSVSATPGKTKHFQT  123 (141)
T ss_pred             CCc---------------------------EEEEECCCCCCHHHHHHHHhC-----------CCceeeCCCCCcccceEE
Confidence            654                           579999999999999999983           455678999999999888


Q ss_pred             EEEccCCCEEEEeCCCCCCC
Q 022351          194 LKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       194 ~~~~~~~~~~liDTPGi~~~  213 (298)
                      +.+..  +++|+||||+..|
T Consensus       124 ~~~~~--~~~i~DtpG~~~p  141 (141)
T cd01857         124 IFLTP--TITLCDCPGLVFP  141 (141)
T ss_pred             EEeCC--CEEEEECCCcCCC
Confidence            77743  6999999999875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.95  E-value=1.8e-27  Score=220.94  Aligned_cols=188  Identities=17%  Similarity=0.167  Sum_probs=142.9

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChh---hHHHHHHHHHccCCCEEEEecCCCc
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPT---QFKEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      ...++|.++.|.+.. |..+.. .+.++   ....++|+++|+||+||.+..   ....+.+.|...+++++.+||+++.
T Consensus       117 iaANvD~vlIV~s~~-p~~s~~-~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        117 IAANIDQIVIVSAVL-PELSLN-IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEEccEEEEEEeCC-CCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            468899999998865 333221 22222   223678999999999998754   3456777776778899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-------ee
Q 022351          116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-------ET  188 (298)
Q Consensus       116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-------~T  188 (298)
                      |+++|.+.+...                .++|+|.||||||||||+|++           .....++..++       ||
T Consensus       195 GideL~~~L~~k----------------i~~~vG~sgVGKSTLiN~Ll~-----------~~~~~t~~is~~~~rGrHTT  247 (347)
T PRK12288        195 GLEELEAALTGR----------------ISIFVGQSGVGKSSLINALLP-----------EAEILVGDVSDNSGLGQHTT  247 (347)
T ss_pred             CHHHHHHHHhhC----------------CEEEECCCCCCHHHHHHHhcc-----------ccceeeccccCcCCCCcCce
Confidence            999999887521                478999999999999999983           33444554443       67


Q ss_pred             eeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHc--cCCchhHHHhhcccCCC
Q 022351          189 KDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAKFSINQIN  266 (298)
Q Consensus       189 ~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~~~~~~  266 (298)
                      +..+.+.+..  +..|+|||||...++.+                 ++++.+..||.++..  ....|++|.|.++|+|+
T Consensus       248 ~~~~l~~l~~--~~~liDTPGir~~~l~~-----------------~~~~~l~~~F~ei~~~~~~CrF~dC~H~~EpgCa  308 (347)
T PRK12288        248 TAARLYHFPH--GGDLIDSPGVREFGLWH-----------------LEPEQVTQGFVEFRDYLGTCKFRDCKHDDDPGCA  308 (347)
T ss_pred             eeEEEEEecC--CCEEEECCCCCcccCCC-----------------CCHHHHHHhhHHHHHHhcCCCCCCCccCCCCCCh
Confidence            7777777743  35799999999998875                 356778889988865  45789999999999999


Q ss_pred             cccccccccCC
Q 022351          267 KPLTLHHKADQ  277 (298)
Q Consensus       267 ~~~~~~~~~~~  277 (298)
                      |++.++...-.
T Consensus       309 V~~Av~~g~i~  319 (347)
T PRK12288        309 LREAVEEGKIA  319 (347)
T ss_pred             HHHHHHcCCCC
Confidence            99988765444

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.95  E-value=6.4e-27  Score=197.27  Aligned_cols=145  Identities=33%  Similarity=0.517  Sum_probs=109.3

Q ss_pred             CeEEEEEeCCCCCCcccHHHhcc--CCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC-----------
Q 022351           47 DIILEVRDARIPFSSEFDQLRNH--HPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN-----------  113 (298)
Q Consensus        47 DlVl~VvDa~~p~~~~~~~l~~~--l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~-----------  113 (298)
                      |+|++|+|++.|+.+.++.+.+.  +...++|+|+|+||+||++++.+..|.+++++....+.+.|+..           
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            89999999999999988888776  54567999999999999998889999999965432332333221           


Q ss_pred             --------------CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccce
Q 022351          114 --------------KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHA  179 (298)
Q Consensus       114 --------------~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~  179 (298)
                                    +.|.+.+++.+.+....      ......++++++|.||||||||||+|++           .+.+
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~vG~pnvGKSslin~l~~-----------~~~~  143 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYSRN------KDIKTSITVGVVGFPNVGKSSLINSLKR-----------SRAC  143 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHhhc------cccccCcEEEEEcCCCCCHHHHHHHHhC-----------cccc
Confidence                          22233444444332221      1123458999999999999999999993           5677


Q ss_pred             eecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          180 TVSPQPGETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       180 ~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      .+++.||+|++.+.+.+.  .+++|+||||+
T Consensus       144 ~~~~~pg~T~~~~~~~~~--~~~~l~DtPGi  172 (172)
T cd04178         144 NVGATPGVTKSMQEVHLD--KKVKLLDSPGI  172 (172)
T ss_pred             eecCCCCeEcceEEEEeC--CCEEEEECcCC
Confidence            899999999999887764  36999999997

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=221.99  Aligned_cols=168  Identities=20%  Similarity=0.278  Sum_probs=136.0

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEec
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNS  111 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa  111 (298)
                      ....++...++.+||+||+|+|++.+++..+..+.++++..++|+++|+||+|-...+  ....++| .+|+ +++++||
T Consensus        71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e--~~~~efy-slG~g~~~~ISA  147 (444)
T COG1160          71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE--ELAYEFY-SLGFGEPVPISA  147 (444)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh--hhHHHHH-hcCCCCceEeeh
Confidence            4445677788999999999999999999999999988876789999999999986332  3344556 5666 7899999


Q ss_pred             CCCcCHHHHHHHHHHHHHhhhhccCCCC-CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee
Q 022351          112 HNKDNVKEFLKFLQAHVRNLRKSDYDAS-SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD  190 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~-~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~  190 (298)
                      .+|.|+.+|++.+...++ ..+...... ..+++++++|.||||||||+|+|+           ++.++.+++.|||||+
T Consensus       148 ~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il-----------geeR~Iv~~~aGTTRD  215 (444)
T COG1160         148 EHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL-----------GEERVIVSDIAGTTRD  215 (444)
T ss_pred             hhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhc-----------cCceEEecCCCCcccc
Confidence            999999999999998873 111111111 257999999999999999999999           4788999999999999


Q ss_pred             eEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351          191 IYSLKI-ASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       191 ~~~~~~-~~~~~~~liDTPGi~~~~~  215 (298)
                      .....+ .+++.+.+|||.|++....
T Consensus       216 ~I~~~~e~~~~~~~liDTAGiRrk~k  241 (444)
T COG1160         216 SIDIEFERDGRKYVLIDTAGIRRKGK  241 (444)
T ss_pred             ceeeeEEECCeEEEEEECCCCCcccc
Confidence            886554 3455799999999987543

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.95  E-value=4.8e-27  Score=219.88  Aligned_cols=172  Identities=29%  Similarity=0.422  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEe
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVN  110 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS  110 (298)
                      .+.|+++++.++++|+|+.|||||.|+..+.++|..+.+.  ..|..++++||+||++++....|.+||...++++++.|
T Consensus       162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S  241 (562)
T KOG1424|consen  162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS  241 (562)
T ss_pred             HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence            5789999999999999999999999999999999888654  45888999999999999999999999988889999999


Q ss_pred             cCCC----------------cCHHHHHH------------HHH---HH---HHhhhhcc-C------CCCCCceEEEEEc
Q 022351          111 SHNK----------------DNVKEFLK------------FLQ---AH---VRNLRKSD-Y------DASSDTVTVMLLG  149 (298)
Q Consensus       111 a~~~----------------~gi~~L~~------------~l~---~~---i~~~~~~~-~------~~~~~~~~i~vvG  149 (298)
                      |...                +++..-..            ...   ..   +......+ +      ......++|++||
T Consensus       242 A~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VG  321 (562)
T KOG1424|consen  242 ALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVG  321 (562)
T ss_pred             cccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeec
Confidence            8751                11111111            000   00   00000000 0      0112358999999


Q ss_pred             CCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351          150 IPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       150 ~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~  217 (298)
                      +|||||||+||+|.           +.|...||..||.|++.|.+.+..  .+.|.|+||++.|++..
T Consensus       322 YPNVGKSSTINaLv-----------G~KkVsVS~TPGkTKHFQTi~ls~--~v~LCDCPGLVfPSf~~  376 (562)
T KOG1424|consen  322 YPNVGKSSTINALV-----------GRKKVSVSSTPGKTKHFQTIFLSP--SVCLCDCPGLVFPSFSP  376 (562)
T ss_pred             CCCCchhHHHHHHh-----------cCceeeeecCCCCcceeEEEEcCC--CceecCCCCccccCCCc
Confidence            99999999999999           378899999999999999987764  58999999999999876

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.94  E-value=4.2e-26  Score=189.19  Aligned_cols=151  Identities=30%  Similarity=0.447  Sum_probs=117.3

Q ss_pred             CeEEEEEeCCCCCCcccHHHh-ccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-CCCEEEEecCCCcCHHHHHHHH
Q 022351           47 DIILEVRDARIPFSSEFDQLR-NHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHNKDNVKEFLKFL  124 (298)
Q Consensus        47 DlVl~VvDa~~p~~~~~~~l~-~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~vi~iSa~~~~gi~~L~~~l  124 (298)
                      |+|++|+|++.|....+..+. ..+...++|+++|+||+|+++.+.+..|+..+... +..++++||+++.|+++|.+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i   80 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF   80 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence            799999999999888777666 34444689999999999998877777787666433 4568999999999999999988


Q ss_pred             HHHHHhhhhcc--CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCE
Q 022351          125 QAHVRNLRKSD--YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI  202 (298)
Q Consensus       125 ~~~i~~~~~~~--~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~  202 (298)
                      .+...+..+..  -.......+++++|.||||||||+|+|++           .+...++..||||++.+.+.+.  .++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~  147 (155)
T cd01849          81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLN-----------KLKLKVGNVPGTTTSQQEVKLD--NKI  147 (155)
T ss_pred             HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHc-----------cccccccCCCCcccceEEEEec--CCE
Confidence            66443211100  01124568999999999999999999993           4456689999999999887654  469


Q ss_pred             EEEeCCCC
Q 022351          203 YVLDTPGI  210 (298)
Q Consensus       203 ~liDTPGi  210 (298)
                      +|+||||+
T Consensus       148 ~liDtPG~  155 (155)
T cd01849         148 KLLDTPGI  155 (155)
T ss_pred             EEEECCCC
Confidence            99999997

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.94  E-value=3.2e-26  Score=209.21  Aligned_cols=190  Identities=19%  Similarity=0.218  Sum_probs=141.0

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccH--HHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHccCCCEEEEecCCCcCHH
Q 022351           42 RMPLVDIILEVRDARIPFSSEFD--QLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQQNCPSFGVNSHNKDNVK  118 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~  118 (298)
                      .+.++|++++|+|+..|......  .+...+...++|+++|+||+||. +.+....|.+.++..+++++++||+++.|++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~  156 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLD  156 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence            46999999999999877543321  12211224679999999999997 3444556777776678899999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-------eeeee
Q 022351          119 EFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-------ETKDI  191 (298)
Q Consensus       119 ~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-------~T~~~  191 (298)
                      +|++.+.                +..++++|.||||||||||+|++.           ....++..++       ||+..
T Consensus       157 ~L~~~l~----------------gk~~~~~G~sgvGKStlin~l~~~-----------~~~~~g~v~~~~~~G~htT~~~  209 (298)
T PRK00098        157 ELKPLLA----------------GKVTVLAGQSGVGKSTLLNALAPD-----------LELKTGEISEALGRGKHTTTHV  209 (298)
T ss_pred             HHHhhcc----------------CceEEEECCCCCCHHHHHHHHhCC-----------cCCCCcceeccCCCCCcccccE
Confidence            9888763                237899999999999999999841           2222333332       67777


Q ss_pred             EEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHc--cCCchhHHHhhcccCCCccc
Q 022351          192 YSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN--FSDEYKKWAKFSINQINKPL  269 (298)
Q Consensus       192 ~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~~~~~~~~~  269 (298)
                      +.+.+..  ..+|+||||+...++..                 ++..++..+|..+-.  ....+++|.|+++|+|.|.+
T Consensus       210 ~~~~~~~--~~~~~DtpG~~~~~~~~-----------------~~~~~~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~  270 (298)
T PRK00098        210 ELYDLPG--GGLLIDTPGFSSFGLHD-----------------LEAEELEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKA  270 (298)
T ss_pred             EEEEcCC--CcEEEECCCcCccCCCC-----------------CCHHHHHHHHHHHHHHhCCCCCCCCcCCCCCCChHHH
Confidence            7766643  36999999999887764                 356667777766544  45678999999999999999


Q ss_pred             ccccccCC
Q 022351          270 TLHHKADQ  277 (298)
Q Consensus       270 ~~~~~~~~  277 (298)
                      .++.....
T Consensus       271 a~~~g~i~  278 (298)
T PRK00098        271 AVEEGEIA  278 (298)
T ss_pred             HHHcCCCC
Confidence            98865544

>cd01859 MJ1464 MJ1464

Probab=99.94  E-value=2.3e-25  Score=184.67  Aligned_cols=152  Identities=30%  Similarity=0.428  Sum_probs=119.6

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCH
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV  117 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi  117 (298)
                      .++..+.++|++++|+|++.|....+..+..++...++|+++|+||+|+.+......|..+....+.+++++||+++.|+
T Consensus         5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi   84 (156)
T cd01859           5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT   84 (156)
T ss_pred             HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccH
Confidence            34456677999999999998877777666554434579999999999998765555554444344568999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc
Q 022351          118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA  197 (298)
Q Consensus       118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~  197 (298)
                      ++|++.+.+.++..        ....+++++|.||||||||+|+|.+           .....+++.+|+|++.+.+...
T Consensus        85 ~~L~~~l~~~~~~~--------~~~~~~~~ig~~~~Gkssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~  145 (156)
T cd01859          85 KILRRTIKELAKID--------GKEGKVGVVGYPNVGKSSIINALKG-----------RHSASTSPSPGYTKGEQLVKIT  145 (156)
T ss_pred             HHHHHHHHHHHhhc--------CCCcEEEEECCCCCCHHHHHHHHhC-----------CCccccCCCCCeeeeeEEEEcC
Confidence            99999998877641        3457889999999999999999982           4466788999999887765543


Q ss_pred             cCCCEEEEeCCCC
Q 022351          198 SHPNIYVLDTPGI  210 (298)
Q Consensus       198 ~~~~~~liDTPGi  210 (298)
                        .+++++||||+
T Consensus       146 --~~~~~~DtpGi  156 (156)
T cd01859         146 --SKIYLLDTPGV  156 (156)
T ss_pred             --CCEEEEECcCC
Confidence              36999999996

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.94  E-value=1.3e-25  Score=192.17  Aligned_cols=158  Identities=25%  Similarity=0.295  Sum_probs=117.5

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHH--HHHccCC---C
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWIT--FFDQQNC---P  105 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~--~~~~~~~---~  105 (298)
                      ....+..+++++|+|++|+|++.+.......+...  ..++|+++|+||+|+.+.+.    .+.|..  .++..+.   +
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKD  101 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCccc
Confidence            35666788999999999999998776666655332  25789999999999975432    233431  1122232   6


Q ss_pred             EEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351          106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP  185 (298)
Q Consensus       106 vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p  185 (298)
                      ++++||+++.|+++|++.+.+.++.           +.+++++|.||||||||||+|++.......   ......++..|
T Consensus       102 i~~vSA~~~~gi~eL~~~l~~~l~~-----------~~~~~~~G~~nvGKStliN~l~~~~~~~~~---~~~~~~~~~~~  167 (190)
T cd01855         102 VILISAKKGWGVEELINAIKKLAKK-----------GGDVYVVGATNVGKSTLINALLKKDNGKKK---LKDLLTTSPIP  167 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhc-----------CCcEEEEcCCCCCHHHHHHHHHHhcccccc---cccccccCCCC
Confidence            8999999999999999999877642           358999999999999999999953211000   01346789999


Q ss_pred             CeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          186 GETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       186 g~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      |||++.+.+.+..  +++|+|||||
T Consensus       168 gtT~~~~~~~~~~--~~~~~DtPG~  190 (190)
T cd01855         168 GTTLDLIKIPLGN--GKKLYDTPGI  190 (190)
T ss_pred             CeeeeeEEEecCC--CCEEEeCcCC
Confidence            9999999887743  5899999997

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.94  E-value=7e-26  Score=202.76  Aligned_cols=195  Identities=21%  Similarity=0.269  Sum_probs=152.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHH--HHHHHHHccCCCEEEEec
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFK--EWITFFDQQNCPSFGVNS  111 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~--~~~~~~~~~~~~vi~iSa  111 (298)
                      ...+..+.++|-+++|+.+..|..+.+. +.++|   ...+...+|++||+||++++...  ++...|...|++++.+|+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~-ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~  149 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNL-LDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA  149 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHH-HHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence            3445668889999999988888655432 22221   24688999999999999876554  566777788999999999


Q ss_pred             CCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHh-----hhcchhhhhcCCccceeecCCCC
Q 022351          112 HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLH-----QIGRITAAEKGKLRHATVSPQPG  186 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~-----~~~~~~~~~~~~~~~~~~~~~pg  186 (298)
                      +++.++++|.+.+..                -..+++|+||||||||||+|.     +++++|... ++++|+       
T Consensus       150 ~~~~~~~~l~~~l~~----------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~-~rGkHT-------  205 (301)
T COG1162         150 KNGDGLEELAELLAG----------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKL-GRGRHT-------  205 (301)
T ss_pred             cCcccHHHHHHHhcC----------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccC-CCCCCc-------
Confidence            999999998888742                267899999999999999997     356666543 345665       


Q ss_pred             eeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHcc--CCchhHHHhhcccC
Q 022351          187 ETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF--SDEYKKWAKFSINQ  264 (298)
Q Consensus       187 ~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~  264 (298)
                       |+....+.+..  +.+|||||||.+.++..                 +.++++..||.++.+.  ...|++|.|.++|+
T Consensus       206 -Tt~~~l~~l~~--gG~iiDTPGf~~~~l~~-----------------~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPg  265 (301)
T COG1162         206 -TTHVELFPLPG--GGWIIDTPGFRSLGLAH-----------------LEPEDLVQAFPEFAELARQCKFRDCTHTHEPG  265 (301)
T ss_pred             -cceEEEEEcCC--CCEEEeCCCCCccCccc-----------------CCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCC
Confidence             66666666643  47999999999998854                 5688999999998877  56899999999999


Q ss_pred             CCcccccccccC
Q 022351          265 INKPLTLHHKAD  276 (298)
Q Consensus       265 ~~~~~~~~~~~~  276 (298)
                      |+|++.++....
T Consensus       266 Cav~~av~~g~i  277 (301)
T COG1162         266 CAVKAAVEEGEI  277 (301)
T ss_pred             cHHHHHHHcCCC
Confidence            999999876543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.93  E-value=5e-26  Score=206.90  Aligned_cols=195  Identities=18%  Similarity=0.206  Sum_probs=142.4

Q ss_pred             HhcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCH
Q 022351           41 DRMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNV  117 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi  117 (298)
                      ..+.++|++++|+|++.|..+.. .+.++   +...++|+++|+||+||.+......|...+...+++++++||+++.|+
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~-~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi  152 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPR-LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL  152 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHH-HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence            45899999999999998762211 22222   123679999999999998765444556656567889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc
Q 022351          118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA  197 (298)
Q Consensus       118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~  197 (298)
                      ++|...+..                ..++++|.+|||||||||+|++......   | .-....+..++||++.+.+.+.
T Consensus       153 ~~L~~~L~~----------------k~~~~~G~sg~GKSTlin~l~~~~~~~~---g-~v~~~~~~g~~tT~~~~~~~~~  212 (287)
T cd01854         153 DELREYLKG----------------KTSVLVGQSGVGKSTLINALLPDLDLAT---G-EISEKLGRGRHTTTHRELFPLP  212 (287)
T ss_pred             HHHHhhhcc----------------ceEEEECCCCCCHHHHHHHHhchhhccc---c-ceeccCCCCCcccceEEEEEcC
Confidence            998887742                3789999999999999999985211100   0 0001122344578888777664


Q ss_pred             cCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHcc--CCchhHHHhhcccCCCccccccccc
Q 022351          198 SHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNF--SDEYKKWAKFSINQINKPLTLHHKA  275 (298)
Q Consensus       198 ~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~  275 (298)
                      .  ..+|+||||+..+.+..                 ++..++..||.++...  ...|++|.|.++|+|+|++.++...
T Consensus       213 ~--~~~liDtPG~~~~~~~~-----------------~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~  273 (287)
T cd01854         213 G--GGLLIDTPGFREFGLLH-----------------IDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGE  273 (287)
T ss_pred             C--CCEEEECCCCCccCCcc-----------------CCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCC
Confidence            3  35899999998877543                 3567788888877654  5689999999999999999988644

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=99.93  E-value=2.1e-25  Score=202.70  Aligned_cols=193  Identities=23%  Similarity=0.412  Sum_probs=148.6

Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEE
Q 022351           30 PHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSF  107 (298)
Q Consensus        30 ghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi  107 (298)
                      |+-.+.+..+.+.|+.+|+||.|+|||+|+.++...+.++++.  ..+..|+|+||+||++......|+..+. ..++.+
T Consensus       198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lS-keyPTi  276 (572)
T KOG2423|consen  198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLS-KEYPTI  276 (572)
T ss_pred             cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHh-hhCcce
Confidence            5556778888899999999999999999999999988888764  4678999999999999999999999994 455655


Q ss_pred             EE--ecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351          108 GV--NSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP  185 (298)
Q Consensus       108 ~i--Sa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p  185 (298)
                      .+  |-.+..|-..|++.+.+...-      ......+.|+|||+|||||||+||+|.           +.+.+.+++.|
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~kL------h~dkkqISVGfiGYPNvGKSSiINTLR-----------~KkVCkvAPIp  339 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFAKL------HSDKKQISVGFIGYPNVGKSSIINTLR-----------KKKVCKVAPIP  339 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHHhh------ccCccceeeeeecCCCCchHHHHHHHh-----------hcccccccCCC
Confidence            44  333445666777777765443      234667999999999999999999998           57899999999


Q ss_pred             CeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCC-ChHHHHHHHH
Q 022351          186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFV-GGKELAQYFL  245 (298)
Q Consensus       186 g~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~-~~~~~~~~~l  245 (298)
                      |-|+-.|.+.+.  +.++|||+||+..|.-.. +  -.+.+.|.++-.-+ .++...+-+|
T Consensus       340 GETKVWQYItLm--krIfLIDcPGvVyps~ds-e--t~ivLkGvVRVenv~~pe~yi~~vl  395 (572)
T KOG2423|consen  340 GETKVWQYITLM--KRIFLIDCPGVVYPSSDS-E--TDIVLKGVVRVENVKNPEDYIDGVL  395 (572)
T ss_pred             CcchHHHHHHHH--hceeEecCCCccCCCCCc-h--HHHHhhceeeeeecCCHHHHHHHHH
Confidence            999877754433  469999999999988633 2  23567777774444 3444333333

>PRK13796 GTPase YqeH; Provisional

Probab=99.92  E-value=1.1e-23  Score=197.38  Aligned_cols=156  Identities=23%  Similarity=0.303  Sum_probs=120.3

Q ss_pred             HHHHHHhcCCCC-eEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh----hhHHHHHHHH-HccCC---CE
Q 022351           36 TRAIADRMPLVD-IILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP----TQFKEWITFF-DQQNC---PS  106 (298)
Q Consensus        36 ~~~i~~~l~~aD-lVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~----~~~~~~~~~~-~~~~~---~v  106 (298)
                      .+.+.+.+..+| +|++|+|+.+...+..+.+.++.  .++|+++|+||+||++.    +.+.+|...+ +..++   ++
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v  136 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDV  136 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcE
Confidence            344556666666 99999999988888888777763  47899999999999863    2345565544 33454   68


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG  186 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg  186 (298)
                      +.+||+++.|+++|++.+.+..            .+.++++||.||||||||||+|++...      +..+..++|..||
T Consensus       137 ~~vSAk~g~gI~eL~~~I~~~~------------~~~~v~vvG~~NvGKSTLiN~L~~~~~------~~~~~~~~s~~pG  198 (365)
T PRK13796        137 VLISAQKGHGIDELLEAIEKYR------------EGRDVYVVGVTNVGKSTLINRIIKEIT------GEKDVITTSRFPG  198 (365)
T ss_pred             EEEECCCCCCHHHHHHHHHHhc------------CCCeEEEEcCCCCcHHHHHHHHHhhcc------CccceEEecCCCC
Confidence            9999999999999999987542            234799999999999999999985210      1235678999999


Q ss_pred             eeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351          187 ETKDIYSLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       187 ~T~~~~~~~~~~~~~~~liDTPGi~~~  213 (298)
                      ||++.+.+.+..  +.+|+||||+..+
T Consensus       199 TT~~~~~~~l~~--~~~l~DTPGi~~~  223 (365)
T PRK13796        199 TTLDKIEIPLDD--GSFLYDTPGIIHR  223 (365)
T ss_pred             ccceeEEEEcCC--CcEEEECCCcccc
Confidence            999999887654  3689999999754

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.91  E-value=3.1e-23  Score=194.14  Aligned_cols=158  Identities=25%  Similarity=0.333  Sum_probs=122.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHH-HHHccCC---C
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWIT-FFDQQNC---P  105 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~-~~~~~~~---~  105 (298)
                      ++.+.+..+...+++|++|+|+.+...+..+.+.+.+  .++|+++|+||+||++..    ...+|+. +++..++   +
T Consensus        52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~  129 (360)
T TIGR03597        52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD  129 (360)
T ss_pred             HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence            4455555667899999999999988888888887764  378999999999998643    3455553 3444555   5


Q ss_pred             EEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351          106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP  185 (298)
Q Consensus       106 vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p  185 (298)
                      ++.+||+++.|++++++.+.+..            .+.++++||.||||||||||+|++...      +..+..++|..|
T Consensus       130 i~~vSAk~g~gv~eL~~~l~~~~------------~~~~v~~vG~~nvGKStliN~l~~~~~------~~~~~~~~s~~p  191 (360)
T TIGR03597       130 IILVSAKKGNGIDELLDKIKKAR------------NKKDVYVVGVTNVGKSSLINKLLKQNN------GDKDVITTSPFP  191 (360)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHh------------CCCeEEEECCCCCCHHHHHHHHHhhcc------CCcceeeecCCC
Confidence            89999999999999999986542            135899999999999999999995211      112457899999


Q ss_pred             CeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351          186 GETKDIYSLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       186 g~T~~~~~~~~~~~~~~~liDTPGi~~~  213 (298)
                      |||++.+.+.+.  .+++|+||||+...
T Consensus       192 gtT~~~~~~~~~--~~~~l~DtPG~~~~  217 (360)
T TIGR03597       192 GTTLDLIEIPLD--DGHSLYDTPGIINS  217 (360)
T ss_pred             CeEeeEEEEEeC--CCCEEEECCCCCCh
Confidence            999999887663  34789999999875

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=1.9e-20  Score=179.43  Aligned_cols=167  Identities=21%  Similarity=0.287  Sum_probs=126.8

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEec
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNS  111 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa  111 (298)
                      .....++...+..+|+|++|+|++.+....+..+..+++..++|+++|+||+|+...+..  ..+++ ..++ +++++||
T Consensus        66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-~lg~~~~~~vSa  142 (429)
T TIGR03594        66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-SLGFGEPIPISA  142 (429)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-hcCCCCeEEEeC
Confidence            445566778899999999999999888777777777766678999999999999764421  22333 4565 7999999


Q ss_pred             CCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee
Q 022351          112 HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI  191 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~  191 (298)
                      .++.|++++++.+.+.+++.... .......++++++|.||+|||||+|+|++           .....+++.||||++.
T Consensus       143 ~~g~gv~~ll~~i~~~l~~~~~~-~~~~~~~~~v~ivG~~~~GKSsLin~l~~-----------~~~~~~~~~~gtt~~~  210 (429)
T TIGR03594       143 EHGRGIGDLLDAILELLPEEEEE-EEEEDGPIKIAIIGRPNVGKSTLVNALLG-----------EERVIVSDIAGTTRDS  210 (429)
T ss_pred             CcCCChHHHHHHHHHhcCccccc-ccccCCceEEEEECCCCCCHHHHHHHHHC-----------CCeeecCCCCCceECc
Confidence            99999999999998776541110 11123458999999999999999999993           4456788999999987


Q ss_pred             EEEEE-ccCCCEEEEeCCCCCCCC
Q 022351          192 YSLKI-ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       192 ~~~~~-~~~~~~~liDTPGi~~~~  214 (298)
                      ....+ ..+..+.++||||+....
T Consensus       211 ~~~~~~~~~~~~~liDT~G~~~~~  234 (429)
T TIGR03594       211 IDIPFERNGKKYLLIDTAGIRRKG  234 (429)
T ss_pred             EeEEEEECCcEEEEEECCCccccc
Confidence            64433 234468999999987643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK01889 GTPase RsgA; Reviewed

Probab=99.85  E-value=2e-21  Score=181.51  Aligned_cols=151  Identities=22%  Similarity=0.226  Sum_probs=100.0

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChh-hHHHHHHHHHccCCCEEEEecCCCcCHH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQNCPSFGVNSHNKDNVK  118 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~~~~vi~iSa~~~~gi~  118 (298)
                      +.++|.+++|+++..++...  .+.++   +...+.+++||+||+||++.. ....++..+ ..+++++++|++++.|++
T Consensus       110 aANvD~vliV~s~~p~~~~~--~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~  186 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLR--RIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD  186 (356)
T ss_pred             EEeCCEEEEEEecCCCCChh--HHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence            68999999999986333321  22222   223678999999999998752 222333334 567899999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceee-cCCCCeeeeeEEEEEc
Q 022351          119 EFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATV-SPQPGETKDIYSLKIA  197 (298)
Q Consensus       119 ~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~-~~~pg~T~~~~~~~~~  197 (298)
                      +|..++.               .+-+++++|.||+|||||+|+|++.....     .+..... .....+|+..+.+.+.
T Consensus       187 ~L~~~L~---------------~g~~~~lvG~sgvGKStLin~L~g~~~~~-----~G~i~~~~~~g~~tt~~~~l~~l~  246 (356)
T PRK01889        187 VLAAWLS---------------GGKTVALLGSSGVGKSTLVNALLGEEVQK-----TGAVREDDSKGRHTTTHRELHPLP  246 (356)
T ss_pred             HHHHHhh---------------cCCEEEEECCCCccHHHHHHHHHHhcccc-----eeeEEECCCCCcchhhhccEEEec
Confidence            9888873               23478999999999999999998522110     0000000 0111244444444443


Q ss_pred             cCCCEEEEeCCCCCCCCCCCh
Q 022351          198 SHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       198 ~~~~~~liDTPGi~~~~~~~~  218 (298)
                      .  +.+++||||+..+.+.+.
T Consensus       247 ~--~~~l~DtpG~~~~~l~~~  265 (356)
T PRK01889        247 S--GGLLIDTPGMRELQLWDA  265 (356)
T ss_pred             C--CCeecCCCchhhhcccCc
Confidence            3  358999999988777654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=1.9e-20  Score=181.55  Aligned_cols=163  Identities=23%  Similarity=0.226  Sum_probs=119.2

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCC
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHN  113 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~  113 (298)
                      ...++..++..+|+||+|+|++.+.+..+..+..++...++|+++|+||+|+.....  ...+.+ ..++ ..+++||++
T Consensus       107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~  183 (472)
T PRK03003        107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALH  183 (472)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCC
Confidence            445566789999999999999987766566666665557899999999999864321  122233 3343 467999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE
Q 022351          114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS  193 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~  193 (298)
                      +.|+++|++.+.+.+.+..+. ........+|+++|.||||||||+|+|++           .....+++.||+|++...
T Consensus       184 g~gi~eL~~~i~~~l~~~~~~-~~~~~~~~kI~iiG~~nvGKSSLin~l~~-----------~~~~~~s~~~gtT~d~~~  251 (472)
T PRK03003        184 GRGVGDLLDAVLAALPEVPRV-GSASGGPRRVALVGKPNVGKSSLLNKLAG-----------EERSVVDDVAGTTVDPVD  251 (472)
T ss_pred             CCCcHHHHHHHHhhccccccc-ccccccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCccCCcce
Confidence            999999999998777541111 01123468999999999999999999983           345568899999998764


Q ss_pred             EEE-ccCCCEEEEeCCCCCC
Q 022351          194 LKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       194 ~~~-~~~~~~~liDTPGi~~  212 (298)
                      ..+ ..+..+.|+||||+..
T Consensus       252 ~~~~~~~~~~~l~DTaG~~~  271 (472)
T PRK03003        252 SLIELGGKTWRFVDTAGLRR  271 (472)
T ss_pred             EEEEECCEEEEEEECCCccc
Confidence            322 2344688999999864

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.84  E-value=6.9e-22  Score=163.48  Aligned_cols=141  Identities=23%  Similarity=0.391  Sum_probs=100.5

Q ss_pred             HHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh-----hcc
Q 022351           93 KEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ-----IGR  167 (298)
Q Consensus        93 ~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~-----~~~  167 (298)
                      ++|.+.|++.+++++.+|+++++|+++|.+.+..                -+++++|.+|||||||||+|+.     ++.
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~----------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~   65 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG----------------KTSVLLGQSGVGKSSLINALLPEAKQKTGE   65 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT----------------SEEEEECSTTSSHHHHHHHHHTSS----S-
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC----------------CEEEEECCCCCCHHHHHHHHHhhcchhhhh
Confidence            5678889899999999999999999999988742                3789999999999999999984     233


Q ss_pred             hhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHH
Q 022351          168 ITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI  247 (298)
Q Consensus       168 ~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~  247 (298)
                      ++... ++++|        ||+..+.+.+..  +.+|||||||..+++..                 +++++++.+|.++
T Consensus        66 is~~~-~rGkH--------TTt~~~l~~l~~--g~~iIDTPGf~~~~l~~-----------------~~~~~l~~~F~e~  117 (161)
T PF03193_consen   66 ISEKT-GRGKH--------TTTHRELFPLPD--GGYIIDTPGFRSFGLWH-----------------IDPEELAQYFPEF  117 (161)
T ss_dssp             ----------------------SEEEEEETT--SEEEECSHHHHT--GCC-----------------S-HHHHHHCSGGG
T ss_pred             hhccc-CCCcc--------cCCCeeEEecCC--CcEEEECCCCCcccccc-----------------CCHHHHHHHHHHh
Confidence            33221 22333        466666666633  58999999999988875                 4577888888877


Q ss_pred             Hcc--CCchhHHHhhcccCCCcccccccccCC
Q 022351          248 LNF--SDEYKKWAKFSINQINKPLTLHHKADQ  277 (298)
Q Consensus       248 l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (298)
                      -..  ...|++|.|.++|+|+|++.++...-.
T Consensus       118 ~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i~  149 (161)
T PF03193_consen  118 RPLAGQCKFRDCTHIHEPGCAVKAAVENGEIS  149 (161)
T ss_dssp             HHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS-
T ss_pred             ccccCCCCccCCCCCCCCCChHHHHHHCCCCc
Confidence            664  468899999999999999999865443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=5.5e-20  Score=176.62  Aligned_cols=163  Identities=21%  Similarity=0.310  Sum_probs=121.0

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCCC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHNK  114 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~  114 (298)
                      ..+...++..+|++|+|+|++.+.+..+..+..++...++|+++|+||+|+...+  ....+++ ..++ +++++||.++
T Consensus        71 ~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSa~~g  147 (435)
T PRK00093         71 REQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-SLGLGEPYPISAEHG  147 (435)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-hcCCCCCEEEEeeCC
Confidence            3445567899999999999998877766666666655689999999999976532  2223333 4555 5899999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE
Q 022351          115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL  194 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~  194 (298)
                      .|++++++.+.........  .......++++++|.||+|||||+|+|++           .....+++.||+|++....
T Consensus       148 ~gv~~l~~~I~~~~~~~~~--~~~~~~~~~v~ivG~~n~GKStlin~ll~-----------~~~~~~~~~~gtt~~~~~~  214 (435)
T PRK00093        148 RGIGDLLDAILEELPEEEE--EDEEDEPIKIAIIGRPNVGKSSLINALLG-----------EERVIVSDIAGTTRDSIDT  214 (435)
T ss_pred             CCHHHHHHHHHhhCCcccc--ccccccceEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCceEEEEEE
Confidence            9999999988763322100  01123578999999999999999999993           4567789999999987754


Q ss_pred             EE-ccCCCEEEEeCCCCCCCC
Q 022351          195 KI-ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       195 ~~-~~~~~~~liDTPGi~~~~  214 (298)
                      .+ ..+..+.++||||+....
T Consensus       215 ~~~~~~~~~~lvDT~G~~~~~  235 (435)
T PRK00093        215 PFERDGQKYTLIDTAGIRRKG  235 (435)
T ss_pred             EEEECCeeEEEEECCCCCCCc
Confidence            33 244468999999997654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=1.8e-19  Score=182.52  Aligned_cols=165  Identities=21%  Similarity=0.283  Sum_probs=121.9

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCC
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHN  113 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~  113 (298)
                      ..+++..++..+|++|+|+|++.++...+..+..++...++|+++|+||+|+.....  ...+++ ..+. ..+++||++
T Consensus       344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~  420 (712)
T PRK09518        344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMH  420 (712)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCC
Confidence            456667789999999999999987777766676666567899999999999865321  122333 2333 568999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhc-cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE
Q 022351          114 KDNVKEFLKFLQAHVRNLRKS-DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY  192 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~~~~~-~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~  192 (298)
                      +.|+++|++.+.+.++..... .+.......+|+++|.||||||||+|+|++           .....+++.||||++..
T Consensus       421 g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~-----------~~~~~v~~~~gtT~d~~  489 (712)
T PRK09518        421 GRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTH-----------EERAVVNDLAGTTRDPV  489 (712)
T ss_pred             CCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhC-----------ccccccCCCCCCCcCcc
Confidence            999999999998877541110 001123457999999999999999999983           44566789999999876


Q ss_pred             EEEE-ccCCCEEEEeCCCCCCC
Q 022351          193 SLKI-ASHPNIYVLDTPGILPP  213 (298)
Q Consensus       193 ~~~~-~~~~~~~liDTPGi~~~  213 (298)
                      ...+ ..+..+.++||||+...
T Consensus       490 ~~~~~~~~~~~~liDTaG~~~~  511 (712)
T PRK09518        490 DEIVEIDGEDWLFIDTAGIKRR  511 (712)
T ss_pred             eeEEEECCCEEEEEECCCcccC
Confidence            4322 23446889999998753

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.53  E-value=1.1e-14  Score=136.69  Aligned_cols=93  Identities=29%  Similarity=0.348  Sum_probs=71.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ..+++++++|.||||||||+|+|+           +..++.|++.||||||+....+. ++-++.|+||.|+++..-.-+
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~-----------~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE  283 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALL-----------GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVE  283 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHh-----------cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHH
Confidence            568999999999999999999999           36789999999999999854332 344699999999998655444


Q ss_pred             hhhhhhhhhcccccCCCChHHHHHHHHHHHccCC
Q 022351          219 EVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD  252 (298)
Q Consensus       219 ~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~  252 (298)
                      ..++.-|..         ..+-||.+|+++|.+.
T Consensus       284 ~iGIeRs~~---------~i~~ADlvL~v~D~~~  308 (454)
T COG0486         284 RIGIERAKK---------AIEEADLVLFVLDASQ  308 (454)
T ss_pred             HHHHHHHHH---------HHHhCCEEEEEEeCCC
Confidence            445444443         3445667777777766

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.46  E-value=1.2e-13  Score=114.20  Aligned_cols=64  Identities=30%  Similarity=0.428  Sum_probs=46.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ++|+++|.||||||||+|+|++            ....++++||+|.+.....+. .+..+.++||||+........
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg------------~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~   65 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTG------------AKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE   65 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHT------------TSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC------------CCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence            4799999999999999999993            347899999999988754333 334699999999987654443

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.46  E-value=1.3e-13  Score=123.09  Aligned_cols=68  Identities=35%  Similarity=0.512  Sum_probs=56.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCCCChh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEIHDVE  219 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~~~~~  219 (298)
                      +...|+++|.||||||||+|+|+           +.+.+.+|+.|.|||+.. ++......++.++|||||..|...-.+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~-----------G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~   73 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALV-----------GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGE   73 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHh-----------cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHH
Confidence            34678999999999999999999           478999999999999866 455556668999999999998554333

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.44  E-value=9.1e-14  Score=125.16  Aligned_cols=70  Identities=34%  Similarity=0.476  Sum_probs=56.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ....++++.|+||||||||+++|.            .....+.++|+||+.+..-++. ....+++|||||+.+-.+.+.
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT------------~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er  233 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLT------------TAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER  233 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHh------------cCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh
Confidence            356799999999999999999998            3457899999999998854443 344799999999999776655


Q ss_pred             hhh
Q 022351          219 EVC  221 (298)
Q Consensus       219 ~~~  221 (298)
                      +..
T Consensus       234 N~I  236 (346)
T COG1084         234 NEI  236 (346)
T ss_pred             cHH
Confidence            443

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=9.2e-13  Score=111.68  Aligned_cols=66  Identities=29%  Similarity=0.423  Sum_probs=56.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~  217 (298)
                      .....|+++|+||||||||||+|++          ....+.+|..||.|+.+..+.+.+.  +.++|.||+..-..+.
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~----------~k~LArtSktPGrTq~iNff~~~~~--~~lVDlPGYGyAkv~k   87 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTN----------QKNLARTSKTPGRTQLINFFEVDDE--LRLVDLPGYGYAKVPK   87 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhC----------CcceeecCCCCCccceeEEEEecCc--EEEEeCCCcccccCCH
Confidence            4566899999999999999999993          3456999999999999999877643  8999999998866554

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=1.4e-12  Score=122.78  Aligned_cols=64  Identities=33%  Similarity=0.540  Sum_probs=55.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~  214 (298)
                      ..++.|+++|.||||||||+|+|.           +..++.||+.||||||.....+ .++.+++|+||.|+++..
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~-----------~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~  330 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALS-----------REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES  330 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHh-----------cCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc
Confidence            567999999999999999999998           4788999999999999885444 345579999999999933

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.31  E-value=1e-12  Score=123.30  Aligned_cols=60  Identities=37%  Similarity=0.452  Sum_probs=50.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ..|++||.||||||||+|+|.           +.+.+.|+++||+|||...  ..+. +..+.+|||+|+....
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~-----------g~r~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~   65 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLT-----------GRRIAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGD   65 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHh-----------CCeeeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCC
Confidence            379999999999999999999           4788999999999999874  3333 3459999999998644

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.30  E-value=4.9e-12  Score=99.28  Aligned_cols=61  Identities=39%  Similarity=0.530  Sum_probs=48.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~  215 (298)
                      +|+++|.||+|||||+|+|++           .+...++..|++|+......+ .....+.++||||+.....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~-----------~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~   62 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG-----------KKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES   62 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT-----------STSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred             CEEEECCCCCCHHHHHHHHhc-----------cccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence            589999999999999999993           446789999999999854222 2333578999999987644

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00436 era GTP-binding protein Era

Probab=99.19  E-value=4.8e-11  Score=107.71  Aligned_cols=60  Identities=35%  Similarity=0.557  Sum_probs=48.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      +|+++|.||||||||+|+|++           .+.+.+++.|+||++.. .+......++.++||||+..+.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~-----------~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~   62 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHG-----------QKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK   62 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc
Confidence            689999999999999999993           56678999999999865 3333344568999999998763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.15  E-value=7.9e-12  Score=112.45  Aligned_cols=117  Identities=21%  Similarity=0.230  Sum_probs=85.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCCCChhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEIHDVEV  220 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~~~~~~  220 (298)
                      ..++++||+||||||||+|.|.            +....++.+|+||..+. .+....+-+++|+|+|||....-....+
T Consensus        63 da~v~lVGfPsvGKStLL~~LT------------nt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr  130 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLT------------NTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR  130 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHh------------CCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC
Confidence            4699999999999999999998            34567889999998876 3434455679999999999865444322


Q ss_pred             hhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCcccccccccCCCCC
Q 022351          221 CSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQSSG  280 (298)
Q Consensus       221 ~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (298)
                      +.          .+++..+-||.++.+++......+++.+-.+-.++.-+|.++++.-.+
T Consensus       131 G~----------~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I  180 (365)
T COG1163         131 GR----------QVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTI  180 (365)
T ss_pred             cc----------eeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEE
Confidence            21          245667778888777777766666767666666666777777766543

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.15  E-value=9e-11  Score=100.81  Aligned_cols=63  Identities=22%  Similarity=0.307  Sum_probs=46.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec-CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~-~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~  216 (298)
                      ++|+++|.||||||||+|+|++           .+...++ ..+|+|+.++.... ..+..+.||||||+..+...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg-----------~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~   65 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILG-----------REVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS   65 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhC-----------CCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCC
Confidence            3799999999999999999994           2222222 36688888775432 24557999999999987543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.14  E-value=1.2e-10  Score=103.92  Aligned_cols=64  Identities=30%  Similarity=0.410  Sum_probs=50.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~  214 (298)
                      ...++|+++|.+|||||||+|+|++           .....++..+++|+..+.+.. ..+..+.+|||||+.+..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg-----------~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~   93 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFG-----------ERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV   93 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence            5678999999999999999999993           445667777778887775543 344569999999998764

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.11  E-value=2.2e-10  Score=97.68  Aligned_cols=103  Identities=19%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHH-Hc
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFF-DQ  101 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~-~~  101 (298)
                      -.-||| ..+.+.+...+..+|++|+|+|+..++.....+....+...+.|+++++||+|+....   ..+++.+.+ +.
T Consensus        75 iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~  153 (188)
T PF00009_consen   75 IDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKE  153 (188)
T ss_dssp             EEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccc
Confidence            345899 4588888889999999999999998877766655555445789999999999998322   122333222 21


Q ss_pred             c------CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 Q------NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~------~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .      ..+++++||.++.|+++|++.|.+++|
T Consensus       154 ~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  154 YGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            1      247999999999999999999987764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.10  E-value=1.1e-10  Score=110.39  Aligned_cols=59  Identities=27%  Similarity=0.354  Sum_probs=47.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~~~  214 (298)
                      .|++||.||||||||+|+|.+           . ...++++|+||+......+  .....+.++||||+..+.
T Consensus       161 dValVG~PNaGKSTLln~Lt~-----------~-k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a  221 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSA-----------A-KPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA  221 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhC-----------C-cccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence            799999999999999999982           2 3588999999999875333  333359999999998754

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.09  E-value=1.5e-10  Score=103.40  Aligned_cols=65  Identities=26%  Similarity=0.470  Sum_probs=53.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~  215 (298)
                      .+.+.|+++|.||||||||+|.|.           +.+.+.+|..+.|||.-. .+......++.++||||++.++.
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mi-----------g~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~  135 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMI-----------GQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM  135 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhh-----------CCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence            456899999999999999999999           367888999999887755 44445566899999999998753

>PTZ00258 GTP-binding protein; Provisional

Probab=99.04  E-value=3.4e-10  Score=106.57  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=49.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PN  201 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~  201 (298)
                      ...++|++||.||||||||+|+|.            +....++++||||+++..  +.+.+.                .+
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt------------~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aq   86 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALC------------KQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQ   86 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHh------------cCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCC
Confidence            456899999999999999999997            234689999999988764  222221                24


Q ss_pred             EEEEeCCCCCCCC
Q 022351          202 IYVLDTPGILPPE  214 (298)
Q Consensus       202 ~~liDTPGi~~~~  214 (298)
                      +.++||||+....
T Consensus        87 i~lvDtpGLv~ga   99 (390)
T PTZ00258         87 LDITDIAGLVKGA   99 (390)
T ss_pred             eEEEECCCcCcCC
Confidence            8999999998643

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.04  E-value=7.8e-10  Score=103.44  Aligned_cols=60  Identities=32%  Similarity=0.368  Sum_probs=47.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      ...+|+++|.||||||||+|+|.+            ....+++.||+|+++..  +.+.++..+.++||||+..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~------------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~  249 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTG------------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR  249 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC------------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence            458999999999999999999982            23567888999998874  3343455799999999843

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.01  E-value=1.1e-09  Score=105.83  Aligned_cols=63  Identities=33%  Similarity=0.480  Sum_probs=50.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      ..+++|+++|.||||||||+|+|++           ...+.+++.||+|++.....+. .+..+.++||||+..+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~  276 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLG-----------EERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET  276 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC
Confidence            3568999999999999999999983           4456788999999987643332 3446899999999753

>PRK00089 era GTPase Era; Reviewed

Probab=99.01  E-value=7.6e-10  Score=100.88  Aligned_cols=62  Identities=37%  Similarity=0.569  Sum_probs=49.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ...|+++|.||||||||+|+|+           +.+.+.+++.|+||+.... +....+.++.++||||+..+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~-----------g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~   67 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALV-----------GQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK   67 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHh-----------CCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence            4579999999999999999998           3567788999999987653 322333579999999998765

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.01  E-value=1.2e-09  Score=105.15  Aligned_cols=63  Identities=37%  Similarity=0.469  Sum_probs=50.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      ..+++|+++|.||||||||+|+|++           ...+.+++.||||++.....+. ++..+.++||||+...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~-----------~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~  264 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLK-----------QDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH  264 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhC-----------CCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence            4678999999999999999999993           4456788999999997753332 3346889999999764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01900 YchF YchF subfamily

Probab=98.99  E-value=5.2e-10  Score=100.88  Aligned_cols=58  Identities=28%  Similarity=0.409  Sum_probs=44.7

Q ss_pred             EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCC----------------CEEEEe
Q 022351          145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHP----------------NIYVLD  206 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~----------------~~~liD  206 (298)
                      +++||.||||||||+|+|.+            ....++++||||+++..  +.+...+                .+.++|
T Consensus         1 igivG~PN~GKSTLfn~Lt~------------~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD   68 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTK------------AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD   68 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhC------------CCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEE
Confidence            47999999999999999983            23478999999988763  3333221                389999


Q ss_pred             CCCCCCCC
Q 022351          207 TPGILPPE  214 (298)
Q Consensus       207 TPGi~~~~  214 (298)
                      |||+....
T Consensus        69 ~pGl~~~a   76 (274)
T cd01900          69 IAGLVKGA   76 (274)
T ss_pred             CCCcCCCC
Confidence            99998643

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.98  E-value=1.9e-09  Score=91.03  Aligned_cols=64  Identities=30%  Similarity=0.443  Sum_probs=50.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~  215 (298)
                      ....+|+++|.+|+|||||+|+|++          ......+++.+|+|+++..+...  .++.++||||+.....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~----------~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpG~~~~~~   79 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTN----------RKKLARTSKTPGRTQLINFFEVN--DGFRLVDLPGYGYAKV   79 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC----------CCCcccccCCCCcceEEEEEEeC--CcEEEEeCCCCccccC
Confidence            4567999999999999999999983          22356678899999988766553  3699999999876543

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.98  E-value=1.5e-09  Score=98.92  Aligned_cols=65  Identities=28%  Similarity=0.370  Sum_probs=47.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~~  215 (298)
                      ...++|+++|.+||||||++|+|++           .+.+.++..+++|.....+. ...+..+.+|||||+.+...
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG-----------~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~  101 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIG-----------ERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY  101 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH
Confidence            4678999999999999999999993           44555666666655443221 23455799999999998643

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.98  E-value=7.7e-10  Score=102.74  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=47.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE--EEccCCCEEEEeCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL--KIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~--~~~~~~~~~liDTPGi~~~  213 (298)
                      ..|++||.||||||||+|+|..            ....++++|+||+.+...  .+.....+.++||||+...
T Consensus       159 adVglVG~PNaGKSTLln~ls~------------a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g  219 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG  219 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHc------------CCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence            3799999999999999999982            235689999999998743  3334456999999999764

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.98  E-value=8.1e-10  Score=102.94  Aligned_cols=59  Identities=27%  Similarity=0.390  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CCEEE
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PNIYV  204 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~~~l  204 (298)
                      +++++||.||||||||+|+|.+           . .+.++++||||+++..  +.+...                ..+.+
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~-----------~-~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l   70 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTK-----------A-GAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF   70 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC-----------C-CCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE
Confidence            5899999999999999999982           2 3788999999988763  333321                14899


Q ss_pred             EeCCCCCCC
Q 022351          205 LDTPGILPP  213 (298)
Q Consensus       205 iDTPGi~~~  213 (298)
                      +||||+...
T Consensus        71 vD~pGL~~~   79 (364)
T PRK09601         71 VDIAGLVKG   79 (364)
T ss_pred             EECCCCCCC
Confidence            999999864

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.95  E-value=3.8e-09  Score=92.80  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=74.6

Q ss_pred             ccchhhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHH----HH
Q 022351           26 GWYGPHMAAATRAIADRMP--LVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWIT----FF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~--~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~----~~   99 (298)
                      ...||| .+..+.+...+.  .+|++++|+|+..++...+..+..++...++|+++|+||+|+.+........+    .+
T Consensus        89 iDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L  167 (224)
T cd04165          89 IDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRIL  167 (224)
T ss_pred             EECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHh
Confidence            455898 566676666664  79999999999988777766666665557899999999999987654443333    33


Q ss_pred             Hc--------------------------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          100 DQ--------------------------QNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       100 ~~--------------------------~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      ..                          ...+++.+||.+|+|+++|.++|..
T Consensus       168 ~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         168 KVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             cCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            21                          0127899999999999999988864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK15494 era GTPase Era; Provisional

Probab=98.95  E-value=2e-09  Score=100.31  Aligned_cols=63  Identities=33%  Similarity=0.541  Sum_probs=49.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~  214 (298)
                      ...+|+++|.||||||||+|+|++           .+.+.+++.|+||++..... ...+.++.++||||+..+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~-----------~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~  114 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIG-----------EKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK  114 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhC-----------CceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence            456899999999999999999983           55677889999998865322 2234478999999997643

>COG1159 Era GTPase [General function prediction only]

Probab=98.94  E-value=8.6e-09  Score=92.36  Aligned_cols=95  Identities=22%  Similarity=0.299  Sum_probs=78.6

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHcc-C-CCEEEEecC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQ-N-CPSFGVNSH  112 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~-~-~~vi~iSa~  112 (298)
                      .+.++..+..+|+|++|+|+..++...+..+.+.++..+.|+++++||+|...++. +....+++... . ..++++||+
T Consensus        76 ~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~  155 (298)
T COG1159          76 NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISAL  155 (298)
T ss_pred             HHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecc
Confidence            35677889999999999999998888888877776655689999999999998766 45666666432 2 279999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q 022351          113 NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.+++.|++.+..++++
T Consensus       156 ~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             ccCCHHHHHHHHHHhCCC
Confidence            999999999999988765

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.94  E-value=2.9e-09  Score=90.69  Aligned_cols=63  Identities=30%  Similarity=0.441  Sum_probs=50.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ....+|+++|.+|||||||+|+|++          ....+.+++.+|+|+.+..+.+  ..++.|+||||+....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~----------~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~   84 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTN----------RKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAK   84 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC----------CCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcC
Confidence            4567999999999999999999983          2225677888999998876554  3469999999986543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.93  E-value=3.7e-09  Score=103.81  Aligned_cols=63  Identities=33%  Similarity=0.415  Sum_probs=50.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~~  217 (298)
                      .+++++|.||||||||+|+|.            +.+..++++||+|.+...-.. ..+..+.++|.||+.+.....
T Consensus         4 ~~valvGNPNvGKTtlFN~LT------------G~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S   67 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALT------------GANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS   67 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHh------------ccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence            469999999999999999998            456889999999988764332 334469999999998865443

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.93  E-value=1.5e-09  Score=101.22  Aligned_cols=88  Identities=19%  Similarity=0.328  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI  196 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~  196 (298)
                      +.+....|++.+....       ...++|+|+|.+|+|||||||+|++.+.-      ....+.++. ..||.....|..
T Consensus        17 ~~~~~s~i~~~l~~~~-------~~~l~IaV~G~sGsGKSSfINalrGl~~~------d~~aA~tGv-~etT~~~~~Y~~   82 (376)
T PF05049_consen   17 LQEVVSKIREALKDID-------NAPLNIAVTGESGSGKSSFINALRGLGHE------DEGAAPTGV-VETTMEPTPYPH   82 (376)
T ss_dssp             HHHHHHHHHHHHHHHH-------H--EEEEEEESTTSSHHHHHHHHTT--TT------STTS--SSS-HSCCTS-EEEE-
T ss_pred             HHHHHHHHHHHHHHhh-------cCceEEEEECCCCCCHHHHHHHHhCCCCC------CcCcCCCCC-CcCCCCCeeCCC
Confidence            4555556665555432       35689999999999999999999976431      122333333 246777778877


Q ss_pred             ccCCCEEEEeCCCCCCCCCCCh
Q 022351          197 ASHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       197 ~~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ...+++.++|.||+..+.++..
T Consensus        83 p~~pnv~lWDlPG~gt~~f~~~  104 (376)
T PF05049_consen   83 PKFPNVTLWDLPGIGTPNFPPE  104 (376)
T ss_dssp             SS-TTEEEEEE--GGGSS--HH
T ss_pred             CCCCCCeEEeCCCCCCCCCCHH
Confidence            7778999999999998876543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.91  E-value=2.1e-09  Score=102.62  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=46.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~  212 (298)
                      .|++||.||||||||||+|.+            ....++++|+||+.+....+  .....+.++||||+..
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~------------ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie  218 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSN------------AKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE  218 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHc------------CCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence            799999999999999999982            33568899999999875333  3245799999999975

>cd04171 SelB SelB subfamily

Probab=98.91  E-value=8e-09  Score=84.90  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCChhh----HHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQ----FKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~----~~~~~~~~~  100 (298)
                      -|...++.+....+...+..+|++++|+|++.+...........+.. ..+|+++|+||+|+.+...    .+++.+.+.
T Consensus        55 ~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~  134 (164)
T cd04171          55 FIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA  134 (164)
T ss_pred             EEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH
Confidence            35544446677777788999999999999986433322221111111 2359999999999986532    233344443


Q ss_pred             c---cCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 Q---QNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ~---~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      .   .+.+++++||+++.|++++++.+.
T Consensus       135 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  162 (164)
T cd04171         135 GTFLADAPIFPVSAVTGEGIEELKEYLD  162 (164)
T ss_pred             hcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence            3   356899999999999999988875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.91  E-value=3.4e-09  Score=86.31  Aligned_cols=62  Identities=37%  Similarity=0.526  Sum_probs=47.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE  214 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~  214 (298)
                      +++|+++|.+|+|||||+|+|.+           ...+.+++.|++|++.....+. .+..+.++||||+....
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~   63 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAG-----------RDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE   63 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHC-----------CceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc
Confidence            35899999999999999999983           3455677889999887643322 23368899999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.91  E-value=2.9e-09  Score=104.66  Aligned_cols=65  Identities=26%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecC-CCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP-QPGETKDIYSLKIASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~-~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~  216 (298)
                      ..++|+++|.|||||||++|+|++           .+...++. .|+||+.........+..+.||||||+......
T Consensus       117 fslrIvLVGKTGVGKSSLINSILG-----------ekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~d  182 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFG-----------EVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASD  182 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc-----------cccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccc
Confidence            457999999999999999999993           33444444 467776433333334567999999999987543

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.90  E-value=2.4e-08  Score=82.92  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC--CCEEEEec
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN--CPSFGVNS  111 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~--~~vi~iSa  111 (298)
                      +..+.+...+..+|++++|+|+..+.+.....+...  ..++|+++++||+|+... ..+.+.+.+...+  .+++++||
T Consensus        53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa  129 (158)
T PRK15467         53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNS  129 (158)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEEC
Confidence            455666677899999999999987755444444443  246899999999998643 2333444444444  48999999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q 022351          112 HNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~  130 (298)
                      ++++|+++|++.+.+.+..
T Consensus       130 ~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        130 HDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             CCccCHHHHHHHHHHhchh
Confidence            9999999999999876643

>PRK04213 GTP-binding protein; Provisional

Probab=98.89  E-value=3.5e-09  Score=90.91  Aligned_cols=57  Identities=26%  Similarity=0.397  Sum_probs=45.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ...+|+++|.+|||||||+|+|.+           . ...++..||+|++...+...   ++.++||||+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~-----------~-~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~   64 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTG-----------K-KVRVGKRPGVTRKPNHYDWG---DFILTDLPGFGF   64 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC-----------C-CCccCCCCceeeCceEEeec---ceEEEeCCcccc
Confidence            457999999999999999999982           2 24577889999887655433   589999999754

>cd01894 EngA1 EngA1 subfamily

Probab=98.89  E-value=2e-08  Score=81.86  Aligned_cols=88  Identities=17%  Similarity=0.160  Sum_probs=67.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCCCc
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHNKD  115 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~~  115 (298)
                      +.....+..+|++++|+|++.+....+..+..++...+.|+++|+||+|+.+....   ...+...+. +++.+|++++.
T Consensus        68 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~  144 (157)
T cd01894          68 EQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGR  144 (157)
T ss_pred             HHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCC
Confidence            34556788899999999998877666666655554567999999999999876543   222334454 78999999999


Q ss_pred             CHHHHHHHHHHH
Q 022351          116 NVKEFLKFLQAH  127 (298)
Q Consensus       116 gi~~L~~~l~~~  127 (298)
                      |++++++++.+.
T Consensus       145 gv~~l~~~l~~~  156 (157)
T cd01894         145 GIGDLLDAILEL  156 (157)
T ss_pred             CHHHHHHHHHhh
Confidence            999999988653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=98.89  E-value=3.9e-09  Score=101.06  Aligned_cols=58  Identities=31%  Similarity=0.316  Sum_probs=45.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      .+|+++|.||||||||+|+|.+           .+. .+++.||+|++...  +.+.....+.++||||+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~-----------~~~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r  257 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITE-----------ARV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIR  257 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------Cce-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence            5899999999999999999982           233 37889999988764  3344434688999999844

>cd01889 SelB_euk SelB subfamily

Probab=98.88  E-value=9.3e-09  Score=87.83  Aligned_cols=101  Identities=22%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHHH---
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFFD---  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~---  100 (298)
                      .||| ....+.+...+..+|.+++|+|++.+..........+....++|+++|+||+|+......    +++.+.+.   
T Consensus        75 tpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~  153 (192)
T cd01889          75 CPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL  153 (192)
T ss_pred             CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH
Confidence            3566 456677777788899999999998765433322111212246899999999999854322    22222221   


Q ss_pred             ----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                          ..+++++++||+++.|+++|++++..+++
T Consensus       154 ~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         154 EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                23568999999999999999999987764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.88  E-value=2.3e-09  Score=93.37  Aligned_cols=66  Identities=27%  Similarity=0.375  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCCCCCh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ++|+++|.+|+||||++|+|++          ...........++|+.++... ...+..+.||||||+.++...+.
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg----------~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~   67 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILG----------KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE   67 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT----------SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc----------ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence            4799999999999999999994          222222223445666666433 23456799999999988776544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.88  E-value=2.5e-09  Score=103.49  Aligned_cols=59  Identities=27%  Similarity=0.394  Sum_probs=46.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      ..|++||.||||||||||+|..            ....++++|+||+.+....+. .+..++|+||||+...
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~------------akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg  219 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSA------------AKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG  219 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhc------------CCccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence            4899999999999999999982            245679999999987743332 2336899999999753

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.87  E-value=3.1e-09  Score=98.60  Aligned_cols=59  Identities=24%  Similarity=0.407  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~  213 (298)
                      ..|++||.||||||||+|+|.+            ....++++|+||+.+..  +.+.+...+.|+||||+.+.
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~------------~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~  218 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSA------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG  218 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhc------------CCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence            4789999999999999999982            23568999999988774  33333357999999999764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01890 LepA LepA subfamily

Probab=98.86  E-value=7.4e-09  Score=86.82  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccC
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQN  103 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~  103 (298)
                      |...++.+....+...+..+|++|+|+|++.+...........+...++|+++|+||+|+.+...   .+++.+.+ ...
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-~~~  150 (179)
T cd01890          72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL-GLD  150 (179)
T ss_pred             EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh-CCC
Confidence            54333356677777889999999999999876544332221111135789999999999864321   12222222 111


Q ss_pred             -CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          104 -CPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       104 -~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                       .+++.+||+++.|+++|++++.+.+
T Consensus       151 ~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         151 PSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             cccEEEeeccCCCCHHHHHHHHHhhC
Confidence             2489999999999999999987553

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=98.86  E-value=3.3e-09  Score=88.07  Aligned_cols=57  Identities=26%  Similarity=0.440  Sum_probs=42.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||+|+|.+            ....++..|++|++...  +......++.++||||+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~------------~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   60 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISN------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE   60 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhc------------CCccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence            589999999999999999983            22357778888876553  2222223689999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.86  E-value=1.5e-08  Score=87.52  Aligned_cols=101  Identities=20%  Similarity=0.259  Sum_probs=69.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-Ccc-cHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSE-FDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~-~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~  101 (298)
                      -||| .+....+...+..+|++++|+|+..+. ... ...+..+.....+|+++|+||+|+.+......    ..+.+..
T Consensus        90 tPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~  168 (203)
T cd01888          90 CPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKG  168 (203)
T ss_pred             CCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhc
Confidence            3666 667888888899999999999998752 222 22232221112357899999999987543322    2222322


Q ss_pred             ---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                         .+.+++++||++++|+++|++++.+.++
T Consensus       169 ~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         169 TIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence               2467999999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.83  E-value=8.3e-10  Score=99.23  Aligned_cols=100  Identities=22%  Similarity=0.252  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCCCCChhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPEIHDVEV  220 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~~~~~~~  220 (298)
                      ..+++||+||+|||||+|+|.+            ....++.+++||..+..  +...+..++.+-|.|||+.-.-  .+.
T Consensus       197 advGLVG~PNAGKSTLL~als~------------AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh--~nk  262 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSR------------AKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH--MNK  262 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhc------------cCCcccccceeeeccccceeeccccceeEeccCcccccccc--ccC
Confidence            3789999999999999999983            33589999999988763  3334455699999999988543  334


Q ss_pred             hhhhhhhcccccCCCChHHHHHHHHHHHccCCc-----hhHHHhhcccC
Q 022351          221 CSKLALTGAIGDSFVGGKELAQYFLGILNFSDE-----YKKWAKFSINQ  264 (298)
Q Consensus       221 ~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~  264 (298)
                      +++..+...        .+.++.+++++|.+..     ...|..|..+-
T Consensus       263 GlG~~FLrH--------iER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL  303 (366)
T KOG1489|consen  263 GLGYKFLRH--------IERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL  303 (366)
T ss_pred             cccHHHHHH--------HHhhceEEEEEECCCcccCCHHHHHHHHHHHH
Confidence            444444433        3345555555555433     34444444443

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.83  E-value=2.6e-09  Score=101.00  Aligned_cols=93  Identities=28%  Similarity=0.348  Sum_probs=65.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCCCCh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ...-+++++|+|||||||++|.+.            .....+.++|+||+.+-.-++. .--..+++|||||....+.+.
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vt------------radvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdr  233 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVT------------RADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDR  233 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhccccc------------ccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhh
Confidence            345689999999999999999997            2346788999999886532221 111478999999999888877


Q ss_pred             hhhhhhhhhcccccCCCChHHHHHHHHHHHccCC
Q 022351          219 EVCSKLALTGAIGDSFVGGKELAQYFLGILNFSD  252 (298)
Q Consensus       219 ~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~  252 (298)
                      +....++++.        -..+...+||+++.++
T Consensus       234 N~IEmqsITA--------LAHLraaVLYfmDLSe  259 (620)
T KOG1490|consen  234 NIIEMQIITA--------LAHLRSAVLYFMDLSE  259 (620)
T ss_pred             hHHHHHHHHH--------HHHhhhhheeeeechh
Confidence            6655555442        2344455667776654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.82  E-value=4.6e-08  Score=78.97  Aligned_cols=87  Identities=18%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHccCC-CEEEEecCC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQNC-PSFGVNSHN  113 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~~~-~vi~iSa~~  113 (298)
                      .+.+...+.++|++++|+|+..+.+..+..+...   ..+|+++|+||+|+.+.. ..+...++++..+. +++.+||++
T Consensus        53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        53 YSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence            4444456899999999999998876655544443   246999999999997532 22222333334444 789999999


Q ss_pred             CcCHHHHHHHHH
Q 022351          114 KDNVKEFLKFLQ  125 (298)
Q Consensus       114 ~~gi~~L~~~l~  125 (298)
                      +.|++++++++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.82  E-value=4.1e-08  Score=79.77  Aligned_cols=86  Identities=19%  Similarity=0.250  Sum_probs=70.3

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHccCC-CEEEEecCCC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQQNC-PSFGVNSHNK  114 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~~~~-~vi~iSa~~~  114 (298)
                      +.+.....+||+|++|.|+..+.....+.+...   .++|+|-|+||+|+. +.+.++...+.++..|. ++|.+|+.++
T Consensus        55 ~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   55 HALIVTAQDADVVLLLQDATEPRSVFPPGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             HHHHHHHhhCCEEEEEecCCCCCccCCchhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            334455668999999999999888888877765   579999999999998 45566666667766676 6899999999


Q ss_pred             cCHHHHHHHHH
Q 022351          115 DNVKEFLKFLQ  125 (298)
Q Consensus       115 ~gi~~L~~~l~  125 (298)
                      +|+++|.++|.
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999999885

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00436 era GTP-binding protein Era

Probab=98.81  E-value=2.3e-08  Score=90.22  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCC-CEEEEecCC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNC-PSFGVNSHN  113 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~-~vi~iSa~~  113 (298)
                      .+.+...+..+|++++|+|++.+.... ..+...+...++|+++|+||+|+.+..........+. ..++ +++++||++
T Consensus        70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~  148 (270)
T TIGR00436        70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT  148 (270)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence            345667889999999999998764433 4444444446799999999999986554444443332 2233 789999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      +.|+++|++.+.+.+++
T Consensus       149 g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       149 GDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999887654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.80  E-value=1e-09  Score=95.75  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=84.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCCCCChh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPEIHDVE  219 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~~~~~~  219 (298)
                      ...+++++|+|.||||||+..|..            .+...+.+.+||..... +.-.++-+++++|.|||.+..-....
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~------------T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG  128 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITS------------THSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG  128 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhc------------chhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCC
Confidence            346999999999999999999983            34555666667766552 32345567999999999986544433


Q ss_pred             hhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCcccccccccCCC
Q 022351          220 VCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQS  278 (298)
Q Consensus       220 ~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (298)
                      ++          ..++...+-||++|.+|+......+-..+..+-.+|.-.|.++.++.
T Consensus       129 RG----------RQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pni  177 (364)
T KOG1486|consen  129 RG----------RQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNI  177 (364)
T ss_pred             CC----------ceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCe
Confidence            22          22456677788899999888766656667777777778888888885

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.80  E-value=9.2e-09  Score=85.26  Aligned_cols=57  Identities=39%  Similarity=0.606  Sum_probs=42.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||+|+|.+            ....+++.|++|+++...... ...++.++||||+..
T Consensus         2 ~i~~~G~~~~GKssli~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTR------------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc------------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence            689999999999999999983            123356678888776643222 233689999999854

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.80  E-value=1.8e-09  Score=98.02  Aligned_cols=59  Identities=25%  Similarity=0.408  Sum_probs=49.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccCCCEEEEeCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      .|++||+||+|||||||++.            .-...++++|+||..+.  .+.+.....+.+-|.||+++-.
T Consensus       161 DVGLVG~PNaGKSTlls~vS------------~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA  221 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVS------------AAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA  221 (369)
T ss_pred             ccccccCCCCcHHHHHHHHh------------hcCCcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence            68899999999999999997            34578999999998877  3555555569999999999854

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.78  E-value=5e-08  Score=91.33  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ  102 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~  102 (298)
                      ..|.++.+..+...+.+.++|+|++|+|++.|......    .+...+...++|+++|+||+|+.+...+..    +...
T Consensus       250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~  325 (351)
T TIGR03156       250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEG  325 (351)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhC
Confidence            34656556667777789999999999999987543321    122222224789999999999976543322    1122


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      ..+++++||+++.|+++|++.|.+
T Consensus       326 ~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       326 YPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHh
Confidence            246899999999999999998864

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04163 Era Era subfamily

Probab=98.77  E-value=2.1e-08  Score=81.99  Aligned_cols=63  Identities=37%  Similarity=0.517  Sum_probs=45.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~  215 (298)
                      ..+|+++|.+|+|||||+|+|++           .+.+.+++.+++|+....... .....+.++||||+..+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~   66 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG-----------QKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK   66 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC-----------CceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchH
Confidence            35899999999999999999983           344555666677766543322 2234588999999876543

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01878 HflX HflX subfamily

Probab=98.77  E-value=2.2e-08  Score=86.18  Aligned_cols=60  Identities=30%  Similarity=0.350  Sum_probs=42.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      ...+|+++|.+|||||||+|+|.+            ....+...+++|.+...  +.+.+...+.++||||+..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~  101 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTG------------ADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR  101 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhc------------chhccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence            347999999999999999999983            12234455566655443  3333333689999999865

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK00089 era GTPase Era; Reviewed

Probab=98.76  E-value=8.9e-08  Score=87.28  Aligned_cols=95  Identities=21%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHc-c-CCCEEEEecC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQ-Q-NCPSFGVNSH  112 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~-~-~~~vi~iSa~  112 (298)
                      .+.+...+..+|++++|+|+..++......+...+...++|+++|+||+|+. +........+.+.. . ..+++++||+
T Consensus        75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~  154 (292)
T PRK00089         75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL  154 (292)
T ss_pred             HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence            3455677899999999999988666666666665544578999999999998 44555555555543 2 2478999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q 022351          113 NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.|+++|++.+.+.+++
T Consensus       155 ~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        155 KGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCCCHHHHHHHHHHhCCC
Confidence            999999999999887654

>COG2262 HflX GTPases [General function prediction only]

Probab=98.76  E-value=1.2e-07  Score=88.41  Aligned_cols=118  Identities=17%  Similarity=0.101  Sum_probs=84.4

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      +.-.|.++-.+++...+.+..+|++++|+|+++|......    .+..-+....+|.|+|+||+|++++......+... 
T Consensus       251 I~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~-  329 (411)
T COG2262         251 IRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG-  329 (411)
T ss_pred             cccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc-
Confidence            5777999999999999999999999999999998332211    12222223568999999999998766422222222 


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCc
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVG  154 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvG  154 (298)
                       .. ..+++||+++.|++.|++.|...+...         .......+.....|
T Consensus       330 -~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~---------~~~~~l~lp~~~~~  372 (411)
T COG2262         330 -SP-NPVFISAKTGEGLDLLRERIIELLSGL---------RTEVTLELPYTDAG  372 (411)
T ss_pred             -CC-CeEEEEeccCcCHHHHHHHHHHHhhhc---------ccceEEEcCccccc
Confidence             12 589999999999999999999887752         12233455666666

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.75  E-value=4.1e-08  Score=97.64  Aligned_cols=115  Identities=17%  Similarity=0.069  Sum_probs=80.3

Q ss_pred             cceecccCC----CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChh
Q 022351           16 GTAVSQKKG----GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPT   90 (298)
Q Consensus        16 g~~~~~~~~----~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~   90 (298)
                      |+..+..++    .-..||| .++.+.+...+..+|++++|+|+..+......+...++...+.| +++|+||+|+.+.+
T Consensus        41 ~~~~~~~~~~~v~~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~  119 (581)
T TIGR00475        41 GFAYFPLPDYRLGFIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE  119 (581)
T ss_pred             EEEEEEeCCEEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH
Confidence            444555554    2334777 77888888999999999999999986544333322232235677 99999999998765


Q ss_pred             hHHH----HHHHHHcc----CCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351           91 QFKE----WITFFDQQ----NCPSFGVNSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus        91 ~~~~----~~~~~~~~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      ..+.    ..+.+...    +.+++++||+++.|++++.+.+...+...
T Consensus       120 ~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       120 EIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence            3322    22222222    46899999999999999999998877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01895 EngA2 EngA2 subfamily

Probab=98.75  E-value=2e-08  Score=82.85  Aligned_cols=61  Identities=31%  Similarity=0.462  Sum_probs=45.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPP  213 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~  213 (298)
                      .++|+++|.+|+|||||+|+|++           .....++..|++|+......+ ..+..+.++||||+...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~   63 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLG-----------EERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK   63 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhC-----------ccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence            46899999999999999999983           334556677888877653222 23445889999998765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01894 EngA1 EngA1 subfamily

Probab=98.75  E-value=1.4e-08  Score=82.71  Aligned_cols=57  Identities=39%  Similarity=0.518  Sum_probs=42.9

Q ss_pred             EEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       146 ~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      +++|.+|||||||+|+|.+           .....++..|++|++....... .+..+.++||||+...
T Consensus         1 ~l~G~~~~GKssl~~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~   58 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTG-----------RRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD   58 (157)
T ss_pred             CccCCCCCCHHHHHHHHhC-----------CcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence            4799999999999999983           3445667888999876643322 2346889999999764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.75  E-value=8.2e-09  Score=91.45  Aligned_cols=68  Identities=31%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE-EEccCCCEEEEeCCCCCCCCCCCh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL-KIASHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~-~~~~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ..++++.++|.+|+|||||||+|++           +....++..+-+|...... .-..+..+.|.||||+.+..-.|.
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~-----------~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~  105 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQ-----------GEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA  105 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHh-----------ccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH
Confidence            5678999999999999999999994           3345555555444333221 112345799999999998766663

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.74  E-value=2.2e-08  Score=86.16  Aligned_cols=67  Identities=22%  Similarity=0.305  Sum_probs=42.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~  216 (298)
                      ++|+++|.+|||||||+|+|++.....      .....++ ...+|+....+.....+++.++||||+......
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~------~~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~   68 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEE------EGAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP   68 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCC------CCccccC-ccccccCceeeecCCCCCceEEeCCCCCcccCC
Confidence            589999999999999999998522100      0011111 222454444443333457899999999875443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=4.9e-08  Score=84.78  Aligned_cols=87  Identities=20%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeee-eeEE
Q 022351          115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETK-DIYS  193 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~-~~~~  193 (298)
                      -|++.+++.+....-.        ..-.++||+||.+|.|||||+|+|+.......    .......-+.|.||- ....
T Consensus        27 vGidtI~~Qm~~k~mk--------~GF~FNIMVVgqSglgkstlinTlf~s~v~~~----s~~~~~~~p~pkT~eik~~t   94 (336)
T KOG1547|consen   27 VGIDTIIEQMRKKTMK--------TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDS----SSSDNSAEPIPKTTEIKSIT   94 (336)
T ss_pred             ccHHHHHHHHHHHHHh--------ccCceEEEEEecCCCCchhhHHHHHHHHHhhc----cCCCcccCcccceEEEEeee
Confidence            4788888877654432        24568999999999999999999985332211    111122225555542 1111


Q ss_pred             EEEccCC---CEEEEeCCCCCCC
Q 022351          194 LKIASHP---NIYVLDTPGILPP  213 (298)
Q Consensus       194 ~~~~~~~---~~~liDTPGi~~~  213 (298)
                      ..+..++   ++.+|||||+.+.
T Consensus        95 hvieE~gVklkltviDTPGfGDq  117 (336)
T KOG1547|consen   95 HVIEEKGVKLKLTVIDTPGFGDQ  117 (336)
T ss_pred             eeeeecceEEEEEEecCCCcccc
Confidence            1122111   4889999999874

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.74  E-value=3.5e-08  Score=83.00  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHc--
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQ--  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~--  101 (298)
                      .||+ ..........+..+|.+++|+|+..+.......+...+...++|+++|+||+|+..++...    ...+.++.  
T Consensus        69 tpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (189)
T cd00881          69 TPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG  147 (189)
T ss_pred             CCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence            3555 3455556677889999999999988765554444444334689999999999998643322    22223322  


Q ss_pred             ------------cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          102 ------------QNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       102 ------------~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                                  ...+++++||+++.|++++++++.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                        245789999999999999999987654

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.73  E-value=5.1e-08  Score=94.10  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=72.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-CCccc-HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH----H
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIP-FSSEF-DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF----F   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-~~~~~-~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~----~   99 (298)
                      ..-||| +++.+.+...+..+|.+++|+|+..+ ..... +.+.......-+++|+|+||+|+.+.+..++..+.    +
T Consensus       122 IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l  200 (460)
T PTZ00327        122 VDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFV  200 (460)
T ss_pred             eeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHH
Confidence            445898 67889999999999999999999874 33322 22221111133568899999999875543332222    2


Q ss_pred             Hc---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQ---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..   ...+++++||.++.|++.|++.|.+.++.
T Consensus       201 ~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        201 KGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            21   34689999999999999999999876543

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.73  E-value=1.9e-08  Score=95.45  Aligned_cols=60  Identities=27%  Similarity=0.398  Sum_probs=44.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc--------------------c--
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA--------------------S--  198 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~--------------------~--  198 (298)
                      ++|++||.||||||||+|+|.+            ....++++|++|+++..  ..+.                    .  
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~------------~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~   69 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGT   69 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------------CcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCc
Confidence            4799999999999999999983            23567899999987763  1210                    0  


Q ss_pred             -CCCEEEEeCCCCCCCC
Q 022351          199 -HPNIYVLDTPGILPPE  214 (298)
Q Consensus       199 -~~~~~liDTPGi~~~~  214 (298)
                       .-++.++||||+....
T Consensus        70 ~~~~i~i~D~aGl~~ga   86 (396)
T PRK09602         70 RFIPVELIDVAGLVPGA   86 (396)
T ss_pred             ceeeEEEEEcCCcCCCc
Confidence             1247899999997643

>cd01878 HflX HflX subfamily

Probab=98.72  E-value=1.8e-07  Score=80.52  Aligned_cols=91  Identities=21%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEE
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~i  109 (298)
                      +....+...+..+|++++|+|++.+......    .+...+...++|+++|+||+|+.+.....   ..+...+.+++.+
T Consensus       109 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~  185 (204)
T cd01878         109 EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFI  185 (204)
T ss_pred             HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEE
Confidence            4444455567889999999999877544321    12222222468999999999998765433   2333445589999


Q ss_pred             ecCCCcCHHHHHHHHHHH
Q 022351          110 NSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~  127 (298)
                      ||+++.|++++.++|.+.
T Consensus       186 Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         186 SAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             EcCCCCCHHHHHHHHHhh
Confidence            999999999999988643

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04124 RabL2 RabL2 subfamily

Probab=98.72  E-value=5.2e-08  Score=80.65  Aligned_cols=104  Identities=15%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHHcc
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFDQQ  102 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~  102 (298)
                      -|...+..+........+..+|++++|+|+..+.+..+ ..+...+.  ..+.|+++|+||+|+.+.. ..+..++....
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~  131 (161)
T cd04124          53 FWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKH  131 (161)
T ss_pred             EEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHc
Confidence            46654446666666788999999999999987543222 11221111  1368999999999985432 22233333344


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+++.+||+++.|++++++.+.+.+.+
T Consensus       132 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         132 NLPLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            6789999999999999999998776543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.72  E-value=2.4e-08  Score=101.99  Aligned_cols=59  Identities=27%  Similarity=0.396  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      .+|+++|.||||||||+|+|.+            .+..++++||+|.+.....+. .+..+.++||||+...
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg------------~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl   63 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTG------------ARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL   63 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence            5899999999999999999982            234689999999987643332 3346899999999764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.72  E-value=2.3e-08  Score=88.36  Aligned_cols=58  Identities=31%  Similarity=0.407  Sum_probs=44.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPP  213 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~  213 (298)
                      +++++|.||+|||||+|+|.+            ....++..|++|.++..-.+ ..+..+.++||||+...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg------------~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTN------------TKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHC------------CCccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence            689999999999999999983            23456788999977653222 23446889999998654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.71  E-value=9.3e-08  Score=95.58  Aligned_cols=103  Identities=9%  Similarity=0.010  Sum_probs=76.2

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH----HHHHHHHc
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK----EWITFFDQ  101 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~----~~~~~~~~  101 (298)
                      .-||| +++.+.+...+..+|++++|+|+..+......+...++...+.| +++|+||+|+.+.+..+    ++.+.+..
T Consensus        57 DtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~  135 (614)
T PRK10512         57 DVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE  135 (614)
T ss_pred             ECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence            45788 77888899999999999999999987666554444443334566 57999999998754433    23333333


Q ss_pred             cC---CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QN---CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~---~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+   .+++++||+++.|+++|++.|.+....
T Consensus       136 ~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        136 YGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            33   579999999999999999999876543

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=98.71  E-value=3.2e-08  Score=94.46  Aligned_cols=168  Identities=22%  Similarity=0.176  Sum_probs=112.8

Q ss_pred             cceecccCCCccchhhHHHHH----------HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCC
Q 022351           16 GTAVSQKKGGGWYGPHMAAAT----------RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMD   85 (298)
Q Consensus        16 g~~~~~~~~~~wfpghm~~~~----------~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~D   85 (298)
                      |++.+..-..-||..||....          +...+..++--++..|+|..+.+.+..+.+...+  ..+..++..||+|
T Consensus        71 ~~~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v--~~~~~~v~~n~vd  148 (572)
T KOG1249|consen   71 GFLAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDV--GSPRLFVDGNKVD  148 (572)
T ss_pred             cccccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcc--cCCceEeeccccc
Confidence            566666667889999986554          3344455565677888887765556666565542  3344799999999


Q ss_pred             CCChhhHHHHHHHHH---c-----c----C------C-CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEE
Q 022351           86 LASPTQFKEWITFFD---Q-----Q----N------C-PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM  146 (298)
Q Consensus        86 L~~~~~~~~~~~~~~---~-----~----~------~-~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~  146 (298)
                      +.+.+..--....+.   .     .    +      + .+..++++++.|+++|+-.|.....           ....+.
T Consensus       149 l~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-----------f~Gdf~  217 (572)
T KOG1249|consen  149 LLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD-----------FRGDFY  217 (572)
T ss_pred             cccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee-----------ccCcee
Confidence            997654211111111   0     0    1      1 2456788999999999888865432           234688


Q ss_pred             EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351          147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI  196 (298)
Q Consensus       147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~  196 (298)
                      .+|..||||||++|+|++....+......-.+++++++||||.....+.+
T Consensus       218 lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv  267 (572)
T KOG1249|consen  218 LVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPV  267 (572)
T ss_pred             eeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCcc
Confidence            99999999999999999765543332223457899999999988765544

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.70  E-value=7e-08  Score=91.33  Aligned_cols=123  Identities=18%  Similarity=0.126  Sum_probs=90.8

Q ss_pred             cchhHHHHHhhhcceecccCCCccc--h-----h-----------------h-HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 022351            4 SSSSLFKLAREIGTAVSQKKGGGWY--G-----P-----------------H-MAAATRAIADRMPLVDIILEVRDARIP   58 (298)
Q Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~wf--p-----g-----------------h-m~~~~~~i~~~l~~aDlVl~VvDa~~p   58 (298)
                      -||-|-.|.++-=-++.+.+|++-.  .     +                 . -.-++++.++.+++||+|++|+|++.|
T Consensus       230 KSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~  309 (454)
T COG0486         230 KSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP  309 (454)
T ss_pred             HHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Confidence            3666777777777777777773211  0     0                 0 034577888899999999999999998


Q ss_pred             CCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           59 FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        59 ~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+..+...+ ..++|+++|+||+||.+.......  .+ ..+.+++.+|+++++|++.|.+.|.+.+..
T Consensus       310 ~~~~d~~~~~~~-~~~~~~i~v~NK~DL~~~~~~~~~--~~-~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         310 LDKEDLALIELL-PKKKPIIVVLNKADLVSKIELESE--KL-ANGDAIISISAKTGEGLDALREAIKQLFGK  377 (454)
T ss_pred             CchhhHHHHHhc-ccCCCEEEEEechhcccccccchh--hc-cCCCceEEEEecCccCHHHHHHHHHHHHhh
Confidence            777777666622 468999999999999876543322  11 234578999999999999999999887754

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.70  E-value=3.8e-08  Score=86.49  Aligned_cols=69  Identities=23%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc----cCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA----SHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~----~~~~~~liDTPGi~~~~~  215 (298)
                      .+-..|+++|.+++|||||+|.|++..         .........+.||+.+......    .+..+.++||||+..+..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~---------~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~   75 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTL---------SGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER   75 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCC---------CCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence            345688999999999999999999421         1333344557888887643222    234699999999998876


Q ss_pred             CC
Q 022351          216 HD  217 (298)
Q Consensus       216 ~~  217 (298)
                      ..
T Consensus        76 ~~   77 (224)
T cd01851          76 GE   77 (224)
T ss_pred             Cc
Confidence            54

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.69  E-value=1.6e-08  Score=82.61  Aligned_cols=55  Identities=35%  Similarity=0.521  Sum_probs=41.7

Q ss_pred             EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCC
Q 022351          147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ++|.+|||||||+|++.+           . ...++..||+|++...  +.+. +.++.++||||+....
T Consensus         1 l~G~~~~GKssl~~~~~~-----------~-~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~   57 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG-----------A-RQKVGNWPGVTVEKKEGRFKLG-GKEIEIVDLPGTYSLS   57 (158)
T ss_pred             CCCCCCCCHHHHHHHHhc-----------C-cccccCCCCcccccceEEEeeC-CeEEEEEECCCccccC
Confidence            589999999999999983           2 2566778999988753  3333 3468999999987644

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.69  E-value=6.6e-08  Score=81.37  Aligned_cols=103  Identities=14%  Similarity=0.034  Sum_probs=67.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++..+.......++..+|++|+|+|+..+.+-  ....+..++..   .+.|++||.||+||......++..+.+.
T Consensus        61 l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~  140 (175)
T smart00177       61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLG  140 (175)
T ss_pred             EEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhC
Confidence            466666566666667789999999999999875321  12223333221   3579999999999964322222222221


Q ss_pred             -----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 -----QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 -----~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                           ...+.++.+||++|.|+++++++|.+.+
T Consensus       141 ~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      141 LHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             ccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                 1122466899999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=98.69  E-value=5.4e-08  Score=81.40  Aligned_cols=99  Identities=14%  Similarity=0.020  Sum_probs=64.4

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD-  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~-  100 (298)
                      |..++..+.......++..+|++++|+|+.++.+-.  ...+.+.+..   .+.|+++|.||+|+......++..+.+. 
T Consensus        58 ~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~  137 (168)
T cd04149          58 WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL  137 (168)
T ss_pred             EECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC
Confidence            444444555555667889999999999998753221  1223333321   3689999999999864322222223221 


Q ss_pred             ----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 ----QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                          ...+.++.+||+++.|+++++++|.
T Consensus       138 ~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         138 TRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence                1223578999999999999998875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.68  E-value=4.2e-08  Score=80.42  Aligned_cols=58  Identities=31%  Similarity=0.470  Sum_probs=45.6

Q ss_pred             EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      |+++|.+|+|||||+|+|.+          .......++.+++|.....+....  .++++||||+....
T Consensus         2 i~l~G~~g~GKTtL~~~l~~----------~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~D~~g~~~~~   59 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN----------RKKLARTSKTPGKTQLINFFNVND--KFRLVDLPGYGYAK   59 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc----------CCceeeecCCCCcceeEEEEEccC--eEEEecCCCccccc
Confidence            78999999999999999983          234556778888888776655433  68999999987653

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.68  E-value=1e-07  Score=80.89  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=69.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+++.+.......++..+|.+|+|+|++++.+-.  ...+..++..   .+.|+++|.||+|+......++..+.+.
T Consensus        65 i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~  144 (181)
T PLN00223         65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG  144 (181)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhC
Confidence            3655555666666677899999999999998653221  1223333221   3689999999999865443344444432


Q ss_pred             cc-----CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 QQ-----NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~-----~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      -.     .+.++.+||++++|+++++++|.+.+.
T Consensus       145 l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~  178 (181)
T PLN00223        145 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA  178 (181)
T ss_pred             ccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            11     123457899999999999999977654

>PRK15494 era GTPase Era; Provisional

Probab=98.67  E-value=8.4e-08  Score=89.44  Aligned_cols=94  Identities=16%  Similarity=0.295  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC--CCEEEEecCC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN--CPSFGVNSHN  113 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~--~~vi~iSa~~  113 (298)
                      .+.....+..+|++++|+|+..++...+..+...+...+.|+++|+||+|+.+. ...+..+.+....  ..++++||++
T Consensus       122 ~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        122 VRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            344556789999999999998776655544544443456788999999999654 3344445554332  4689999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      +.|+++++++|.+.+++
T Consensus       201 g~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        201 GKNIDGLLEYITSKAKI  217 (339)
T ss_pred             ccCHHHHHHHHHHhCCC
Confidence            99999999999877654

>cd04158 ARD1 ARD1 subfamily

Probab=98.67  E-value=5.1e-08  Score=81.41  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=68.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++..+....+..++..+|.+++|+|+..+.+-  ....+..++.   ..+.|+++|.||+|+......++..+++.
T Consensus        47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  126 (169)
T cd04158          47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLS  126 (169)
T ss_pred             EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhC
Confidence            355554455566666788999999999999875322  1122333322   13579999999999964322333333321


Q ss_pred             --cc----CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 --QQ----NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 --~~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                        +.    .+.++.+||+++.|+++++++|.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         127 LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             CccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence              11    1246678999999999999999876554

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04154 Arl2 Arl2 subfamily

Probab=98.67  E-value=6e-08  Score=81.18  Aligned_cols=99  Identities=11%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD-  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-  100 (298)
                      |..++..+........+..+|++++|+|+..+.+..+  ..+..++.   ..+.|+++|+||+|+......++..+.+. 
T Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  142 (173)
T cd04154          63 WDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALEL  142 (173)
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCc
Confidence            5444334455556678999999999999987522111  12222221   25789999999999975433333333332 


Q ss_pred             ----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 ----QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                          ....+++.+||+++.|++++++++.
T Consensus       143 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         143 DKISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             cccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence                2345799999999999999998874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.67  E-value=2.4e-08  Score=83.09  Aligned_cols=54  Identities=35%  Similarity=0.559  Sum_probs=40.3

Q ss_pred             EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      ++|.+|||||||+|+|.+           ... .++..|++|++...  +.+..+.++.++||||+..
T Consensus         1 iiG~~~~GKStll~~l~~-----------~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~   56 (176)
T cd01881           1 LVGLPNVGKSTLLNALTN-----------AKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE   56 (176)
T ss_pred             CCCCCCCcHHHHHHHHhc-----------CCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence            589999999999999983           222 56778888877653  2233255789999999854

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04157 Arl6 Arl6 subfamily

Probab=98.66  E-value=7.9e-08  Score=78.96  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             ccc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccC-----CCCCCcEEEEEecCCCCChhhHHHHHH
Q 022351           26 GWY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHH-----PFSSSRRILVLNKMDLASPTQFKEWIT   97 (298)
Q Consensus        26 ~wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l-----~~~~k~~IiVlNK~DL~~~~~~~~~~~   97 (298)
                      -|. ||+ .+....+...+..+|.+++|+|++++....  ...+..++     ...+.|+++|+||+|+.+.....++.+
T Consensus        49 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~  127 (162)
T cd04157          49 AFDMSGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQ  127 (162)
T ss_pred             EEECCCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHH
Confidence            344 454 556666677899999999999998754221  11122211     124789999999999976433333333


Q ss_pred             HHH-----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351           98 FFD-----QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus        98 ~~~-----~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      .+.     ...++++.+||+++.|+++++++|.
T Consensus       128 ~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         128 LLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            321     1123478899999999999999875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.65  E-value=6.8e-08  Score=79.96  Aligned_cols=100  Identities=14%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+...+.......++..+|++++|+|+..+.+  .....+..++..   .+.|++++.||+|+.+....++..+.+.
T Consensus        48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~  127 (159)
T cd04150          48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG  127 (159)
T ss_pred             EEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC
Confidence            46544445666666778999999999999976422  111223333221   3589999999999964322223223321


Q ss_pred             -----ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 -----QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 -----~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                           .....++.+||++|.|+++++++|.
T Consensus       128 ~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         128 LHSLRNRNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             ccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence                 1223467899999999999998874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd00880 Era_like Era (E

Probab=98.65  E-value=2.2e-07  Score=74.87  Aligned_cols=92  Identities=22%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHH-----HHHccCCCEEEEe
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWIT-----FFDQQNCPSFGVN  110 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~-----~~~~~~~~vi~iS  110 (298)
                      ...+...+..+|++++|+|+..+.......+.......+.|.++|+||+|+........+..     .....+.+++.+|
T Consensus        66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEe
Confidence            35666778899999999999987665555423322246899999999999988765555432     1113356899999


Q ss_pred             cCCCcCHHHHHHHHHHH
Q 022351          111 SHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~  127 (298)
                      +.++.|++++++.+...
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999988643

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.64  E-value=3.9e-08  Score=90.70  Aligned_cols=57  Identities=25%  Similarity=0.346  Sum_probs=42.8

Q ss_pred             EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc--------------------cC---
Q 022351          145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA--------------------SH---  199 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~--------------------~~---  199 (298)
                      |+++|.||||||||+|+|.+            ....++++|++|+++..  ..+.                    ++   
T Consensus         1 i~ivG~pnvGKStLfn~lt~------------~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~   68 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATL------------ADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY   68 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhC------------CCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence            47999999999999999983            33578999999987662  1210                    11   


Q ss_pred             CCEEEEeCCCCCCC
Q 022351          200 PNIYVLDTPGILPP  213 (298)
Q Consensus       200 ~~~~liDTPGi~~~  213 (298)
                      -.+.++||||+...
T Consensus        69 v~i~l~D~aGlv~g   82 (318)
T cd01899          69 VPVELIDVAGLVPG   82 (318)
T ss_pred             ceEEEEECCCCCCC
Confidence            24889999999753

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd04151 Arl1 Arl1 subfamily

Probab=98.64  E-value=1e-07  Score=78.37  Aligned_cols=96  Identities=14%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+....  ...+..++.   ..++|+++|+||+|+.......+....+.   
T Consensus        51 ~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~  129 (158)
T cd04151          51 GGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSE  129 (158)
T ss_pred             CCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccc
Confidence            554 445555567799999999999998642211  122322222   14789999999999975432233333331   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                        ..+.+++++||+++.|+++++++|.
T Consensus       130 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         130 LKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             cCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence              1224699999999999999998874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04163 Era Era subfamily

Probab=98.64  E-value=2.1e-07  Score=75.95  Aligned_cols=91  Identities=24%  Similarity=0.277  Sum_probs=69.4

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHccC--CCEEEEecCC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQQN--CPSFGVNSHN  113 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~~~--~~vi~iSa~~  113 (298)
                      +.....+..+|++++|+|+..+.......+...+...+.|+++|+||+|+. .......+.+.+....  .+++.+|+++
T Consensus        74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence            344567899999999999998855555555444433568999999999998 4556666666665433  4789999999


Q ss_pred             CcCHHHHHHHHHHH
Q 022351          114 KDNVKEFLKFLQAH  127 (298)
Q Consensus       114 ~~gi~~L~~~l~~~  127 (298)
                      +.|++++.+.|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999988653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.64  E-value=8.1e-08  Score=79.47  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=64.8

Q ss_pred             cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      |. ||+ ..........+..+|++++|+|+..+....  ...+..++.   ..+.|+++++||+|+.+........+.+.
T Consensus        55 ~Dt~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~  133 (167)
T cd04160          55 WDLGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQ  133 (167)
T ss_pred             EECCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhc
Confidence            44 555 455556667899999999999997653211  112222221   24789999999999866533333333332


Q ss_pred             c-------cCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 Q-------QNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ~-------~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      .       .+.+++.+||+++.|+++++++|.
T Consensus       134 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         134 DKAEEIGRRDCLVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             cccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence            1       234789999999999999998875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.64  E-value=1.4e-07  Score=81.08  Aligned_cols=90  Identities=12%  Similarity=-0.006  Sum_probs=63.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH-----HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK-----EWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~-----~~~~~~~  100 (298)
                      .-||| .++...+...+..+|++++|+|+..+.......+..++...++| +|+++||+|+...+...     +..+.+.
T Consensus        71 DtPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~  149 (195)
T cd01884          71 DCPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLS  149 (195)
T ss_pred             ECcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence            44888 46778888899999999999999887666655555444445676 67899999997543222     2223333


Q ss_pred             ccC-----CCEEEEecCCCcCH
Q 022351          101 QQN-----CPSFGVNSHNKDNV  117 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~~gi  117 (298)
                      ..+     .+++++||.+|.++
T Consensus       150 ~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         150 KYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HhcccccCCeEEEeeCccccCC
Confidence            333     47999999998763

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PTZ00099 rab6; Provisional

Probab=98.63  E-value=1.3e-07  Score=79.92  Aligned_cols=105  Identities=18%  Similarity=0.086  Sum_probs=72.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..++..+........+..+|++|+|+|+..+.+...  ..+..++.  ..+.|+++|.||+||....  ..++.....
T Consensus        33 iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~  112 (176)
T PTZ00099         33 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKA  112 (176)
T ss_pred             EEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHH
Confidence            57766667777777788999999999999987532211  12222211  1357889999999996421  122223333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+..++.+||+++.|+++++++|.+.+++
T Consensus       113 ~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        113 QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3345567899999999999999999988776

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.63  E-value=1.2e-07  Score=78.10  Aligned_cols=101  Identities=18%  Similarity=0.009  Sum_probs=67.4

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      |...++.+........+..+|.+++|+|+.++.+...     ..+.......+.|+++|+||+|+.....  .+...+..
T Consensus        55 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~  134 (164)
T cd04145          55 LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA  134 (164)
T ss_pred             EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH
Confidence            4433335565666678899999999999987532111     1122222224789999999999965321  22223333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      +..+.+++.+||+++.|++++++.+...
T Consensus       135 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  162 (164)
T cd04145         135 RKLKIPYIETSAKDRLNVDKAFHDLVRV  162 (164)
T ss_pred             HHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence            3456789999999999999999888654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.63  E-value=9.8e-08  Score=78.40  Aligned_cols=100  Identities=14%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++..+........+..+|.+++|+|++.+.+..  ...+..++..   .+.|+++|+||+|+......++....+.
T Consensus        48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~  127 (160)
T cd04156          48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK  127 (160)
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC
Confidence            3444443455555567799999999999998764211  1223332221   4789999999999964322222222221


Q ss_pred             ------ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 ------QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ------~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                            ..+.+++.+||++++|++++++.|.
T Consensus       128 ~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         128 LKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             CcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence                  1233588899999999999998874

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.63  E-value=1.7e-07  Score=89.89  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=70.2

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHc-----cCCCEEEEec
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQ-----QNCPSFGVNS  111 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~-----~~~~vi~iSa  111 (298)
                      +....+..+|++++|+|+..+.+..+..+...+...++|+++|+||+|+. +.+..+...+.+..     ...+++++||
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA  326 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA  326 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence            33457899999999999998877766665555444689999999999998 44434444333321     1358999999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q 022351          112 HNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++.|++++++.+.+.+..
T Consensus       327 ~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       327 LTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887665

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04127 Rab27A Rab27a subfamily

Probab=98.62  E-value=2.6e-07  Score=77.57  Aligned_cols=103  Identities=19%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+++.+........+..+|.+++|+|+..+.+..+.     .+.......+.|+++|.||+|+.+...  .+...+.
T Consensus        67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~  146 (180)
T cd04127          67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKAL  146 (180)
T ss_pred             EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHH
Confidence            466555566666777889999999999999865332221     122211123678999999999965321  1222233


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+..+.+++.+||+++.|++++++.+.+.+
T Consensus       147 ~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         147 ADKYGIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            334567899999999999999999987654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01895 EngA2 EngA2 subfamily

Probab=98.62  E-value=2.5e-07  Score=76.31  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHHHHc-c----CCCEEEEec
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITFFDQ-Q----NCPSFGVNS  111 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~~~~-~----~~~vi~iSa  111 (298)
                      ....+..+|++++|+|+..+.+.....+...+...++|+++++||+|+.+.  .....+.+.+.+ .    ..+++++||
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            345678999999999999887665544444433357999999999999866  344444444422 1    347999999


Q ss_pred             CCCcCHHHHHHHHHH
Q 022351          112 HNKDNVKEFLKFLQA  126 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~  126 (298)
                      +++.|++++.+.+..
T Consensus       158 ~~~~~i~~~~~~l~~  172 (174)
T cd01895         158 LTGQGVDKLFDAIDE  172 (174)
T ss_pred             cCCCCHHHHHHHHHH
Confidence            999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.62  E-value=1.8e-07  Score=79.35  Aligned_cols=105  Identities=13%  Similarity=-0.001  Sum_probs=67.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HH---HhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQ---LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~---l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+...+....+...+..+|++++|+|+..+.....  ..   +.......++|+++|+||+|+......+.....+.
T Consensus        56 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~  135 (183)
T cd04152          56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA  135 (183)
T ss_pred             EEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC
Confidence            36544445555555677899999999999986522111  11   22222235789999999999864322222222221


Q ss_pred             --cc----CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 --QQ----NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 --~~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                        ..    +.+++++||+++.|++++++.|.+.+.+
T Consensus       136 ~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         136 LHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             ccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence              11    2357899999999999999998877654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.62  E-value=1.1e-07  Score=81.39  Aligned_cols=93  Identities=18%  Similarity=0.120  Sum_probs=61.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHHH---
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFFD---  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~---  100 (298)
                      |...+..+....+...+..+|.+++|+|+..........+...+...++|+++|+||+|+....   ..+++.+.+.   
T Consensus        70 ~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  149 (194)
T cd01891          70 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG  149 (194)
T ss_pred             EECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence            4443336677777888999999999999987543332232222223578999999999996432   2334444442   


Q ss_pred             ----ccCCCEEEEecCCCcCHHH
Q 022351          101 ----QQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~  119 (298)
                          ..+++++++||++|.|+.+
T Consensus       150 ~~~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         150 ATEEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             CccccCccCEEEeehhccccccc
Confidence                2356899999999976533

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK09866 hypothetical protein; Provisional

Probab=98.62  E-value=2.5e-07  Score=91.11  Aligned_cols=89  Identities=16%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC--CcEEEEEecCCCCC-----hhhHHHHHH-HHHccC---CCE
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS--SRRILVLNKMDLAS-----PTQFKEWIT-FFDQQN---CPS  106 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~--k~~IiVlNK~DL~~-----~~~~~~~~~-~~~~~~---~~v  106 (298)
                      .+.+.+..+|+|++|+|+..+....+..+.+.++..+  .|+++|+||+|+.+     .+.+.+.+. .+....   ..+
T Consensus       251 ~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eI  330 (741)
T PRK09866        251 MLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQI  330 (741)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceE
Confidence            3446799999999999998877766766766655445  49999999999975     223333333 222212   269


Q ss_pred             EEEecCCCcCHHHHHHHHHH
Q 022351          107 FGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~  126 (298)
                      +++||+.+.|++.|++.|..
T Consensus       331 fPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        331 FPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             EEEeCCCCCCHHHHHHHHHh
Confidence            99999999999999998875

>cd04171 SelB SelB subfamily

Probab=98.61  E-value=7.8e-08  Score=78.97  Aligned_cols=59  Identities=24%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~  211 (298)
                      .|+++|.+|||||||+|+|.+..         .........+++|.+...  +.+..+..+.++||||..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~---------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~   62 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE---------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE   62 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc---------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence            68999999999999999998310         011111234566766543  223224468999999963

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.61  E-value=2.6e-07  Score=76.07  Aligned_cols=103  Identities=14%  Similarity=0.075  Sum_probs=68.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----cHHHhccCCC----CCCcEEEEEecCCCCChh--hHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE-----FDQLRNHHPF----SSSRRILVLNKMDLASPT--QFKE   94 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-----~~~l~~~l~~----~~k~~IiVlNK~DL~~~~--~~~~   94 (298)
                      -|..+...+........+..+|++|+|+|++.+.+..     ...+......    .+.|+++|.||+|+.+..  ..+.
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  132 (168)
T cd04119          53 FFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE  132 (168)
T ss_pred             EEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH
Confidence            4554444555566667789999999999998753211     1122222221    468999999999997321  2222


Q ss_pred             HHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           95 WITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        95 ~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ........+.+++.+||+++.|++++++.+.+.+
T Consensus       133 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         133 GRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            2233334567899999999999999999987543

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.61  E-value=8e-08  Score=79.39  Aligned_cols=56  Identities=25%  Similarity=0.443  Sum_probs=39.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc----CCCEEEEeCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS----HPNIYVLDTPGIL  211 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~----~~~~~liDTPGi~  211 (298)
                      .|+++|.+|+|||||+|+|..           .+ ......+++|.+.....+..    +..+.++||||..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRK-----------TN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHh-----------cc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence            589999999999999999983           11 12235567777665433322    4468999999964

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.61  E-value=1.8e-07  Score=76.48  Aligned_cols=101  Identities=18%  Similarity=0.072  Sum_probs=68.6

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~  100 (298)
                      |..++..+.......++..+|.+++|+|..++.+..+     ..+..+....+.|+++|.||+|+.... ......+..+
T Consensus        54 ~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  133 (162)
T cd04138          54 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK  133 (162)
T ss_pred             EECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH
Confidence            6655556666666678999999999999876432111     112222223578999999999997532 1223333333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      ..+.+++.+||+++.|++++++.+.+.
T Consensus       134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         134 SYGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             HhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            456789999999999999999888653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.59  E-value=1.3e-07  Score=80.33  Aligned_cols=101  Identities=17%  Similarity=0.064  Sum_probs=66.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++..+.......++..+|.+++|+|+..+..-  ....+..++.   ..++|+++|+||+|+......++..+.+.
T Consensus        65 ~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~  144 (184)
T smart00178       65 TFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALG  144 (184)
T ss_pred             EEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcC
Confidence            355444455666667889999999999999875221  1122333322   25789999999999853322233333331


Q ss_pred             --c----------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 --Q----------QNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 --~----------~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                        +          ....++.+||+++.|+++++++|.+
T Consensus       145 l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      145 LTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             CCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence              1          1225899999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.59  E-value=3.1e-07  Score=75.86  Aligned_cols=99  Identities=16%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH------
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD------  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~------  100 (298)
                      ||+ ..........+..+|++++|+|+..+...........+...++|+++|+||+|+....  ........+.      
T Consensus        58 pG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  136 (168)
T cd01887          58 PGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDE  136 (168)
T ss_pred             CCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcccccc
Confidence            565 3344444556789999999999987543332222223333679999999999997432  2222222221      


Q ss_pred             -ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 -QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 -~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                       ....+++.+|+.++.|++++++++.+..
T Consensus       137 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         137 WGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             ccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence             1134789999999999999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01898 Obg Obg subfamily

Probab=98.59  E-value=1.3e-07  Score=78.30  Aligned_cols=91  Identities=22%  Similarity=0.285  Sum_probs=62.4

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCC-CCccc-HH----HhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHcc--CCCEE
Q 022351           37 RAIADRMPLVDIILEVRDARIP-FSSEF-DQ----LRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQQ--NCPSF  107 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p-~~~~~-~~----l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi  107 (298)
                      ....+.+..+|++++|+|++.+ ..... ..    +..... ..++|+++|+||+|+.+......+...+...  +.+++
T Consensus        70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  149 (170)
T cd01898          70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVF  149 (170)
T ss_pred             HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEE
Confidence            3444556789999999999876 22111 11    222111 1368999999999998766555555444332  56799


Q ss_pred             EEecCCCcCHHHHHHHHHHH
Q 022351          108 GVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       108 ~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .+||+++.|++++++++.+.
T Consensus       150 ~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         150 PISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEecCCCCCHHHHHHHHHhh
Confidence            99999999999999888643

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.58  E-value=1.4e-07  Score=79.21  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+....  ...+..++..   .+.|+++++||+|+......++..+.+.   
T Consensus        67 ~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~  145 (174)
T cd04153          67 GGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTS  145 (174)
T ss_pred             CCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence            454 455555667789999999999998653211  1223333221   3689999999999865322223333331   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                        ...++++++||+++.|+++++++|.
T Consensus       146 ~~~~~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         146 IRDHTWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             ccCCceEEEecccCCCCCHHHHHHHHh
Confidence              2234689999999999999998875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.58  E-value=2.6e-07  Score=78.41  Aligned_cols=104  Identities=14%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFDQ  101 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~~  101 (298)
                      |..++..+.......++..+|++|+|+|+.++.+-  ....+..++..   ...|+++|.||+|+.......+....+..
T Consensus        66 ~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~  145 (182)
T PTZ00133         66 WDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL  145 (182)
T ss_pred             EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC
Confidence            55555456666667789999999999999764321  11223333222   35899999999998653222333333311


Q ss_pred             -----cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 -----QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 -----~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                           ..+.++.+||+++.|+++++++|.+.+..
T Consensus       146 ~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        146 HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence                 11235578999999999999999876543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.58  E-value=3.4e-07  Score=87.58  Aligned_cols=102  Identities=18%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCCCC-CCcEEEEEecCCCCChhhHH----HHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHPFS-SSRRILVLNKMDLASPTQFK----EWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~~~-~k~~IiVlNK~DL~~~~~~~----~~~~~~~~  101 (298)
                      -||| .++...+...+..+|.+++|+|++.+. .........++... .+++++|+||+|+.+.+...    +....+..
T Consensus        92 tPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~  170 (411)
T PRK04000         92 APGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG  170 (411)
T ss_pred             CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc
Confidence            3777 677888888888999999999999765 33322222222222 35789999999998654322    22222221


Q ss_pred             ---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                         .+.+++++||+++.|+++|++.|.+.++.
T Consensus       171 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        171 TVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence               24578999999999999999999876653

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.57  E-value=4.8e-07  Score=87.84  Aligned_cols=93  Identities=19%  Similarity=0.350  Sum_probs=66.0

Q ss_pred             HHHHhcCCCCeEEEEEeCCC------CCCccc---HHHhccC----------CCCCCcEEEEEecCCCCChhhHHHH-HH
Q 022351           38 AIADRMPLVDIILEVRDARI------PFSSEF---DQLRNHH----------PFSSSRRILVLNKMDLASPTQFKEW-IT   97 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~------p~~~~~---~~l~~~l----------~~~~k~~IiVlNK~DL~~~~~~~~~-~~   97 (298)
                      ...+.++++|+||+|+|+..      |+....   .+|..+.          ...++|+|+|+||+|+.+.....++ ..
T Consensus       229 ~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~  308 (500)
T PRK12296        229 DFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRP  308 (500)
T ss_pred             HHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHH
Confidence            44567889999999999964      222211   1233332          1246999999999999755433332 33


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+...+++++++||+++.|+++|+.+|.+.+..
T Consensus       309 ~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        309 ELEARGWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             HHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            454557789999999999999999999888766

>cd01862 Rab7 Rab7 subfamily

Probab=98.57  E-value=5.6e-07  Score=74.62  Aligned_cols=104  Identities=16%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChh--hHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPT--QFKEWI   96 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~--~~~~~~   96 (298)
                      |..+.+..........+..+|.+|+|+|+..+.+..+     ..+...+.   ..++|+++|+||+|+..+.  ..+...
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  133 (172)
T cd01862          54 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQ  133 (172)
T ss_pred             EeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHH
Confidence            4544445566666678999999999999987643111     11122111   1378999999999997321  122222


Q ss_pred             HHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           97 TFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        97 ~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+..+ .+++.+|+.++.|++++++.+.+.+-+
T Consensus       134 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         134 QWCQSNGNIPYFETSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             HHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3333344 589999999999999999998876543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.56  E-value=1.7e-07  Score=75.40  Aligned_cols=58  Identities=31%  Similarity=0.453  Sum_probs=42.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cC--CCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SH--PNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~--~~~~liDTPGi~~  212 (298)
                      .+|+++|.+|+|||||+|+|..           .. ......|++|.+.....+. .+  ..+.++||||...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   62 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLG-----------NK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED   62 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhC-----------CC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence            5899999999999999999983           22 5556677888877653222 22  2478899999433

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.56  E-value=3.8e-07  Score=75.15  Aligned_cols=102  Identities=16%  Similarity=0.087  Sum_probs=68.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC-CCCCcEEEEEecCCCCChhhHH--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP-FSSSRRILVLNKMDLASPTQFK--EWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~-~~~k~~IiVlNK~DL~~~~~~~--~~~~~~~  100 (298)
                      -|..+++.+....+...+.++|++++|+|...+.+..+ ..+ ..+.. ..+.|+++|.||+|+.+...+.  ....+..
T Consensus        56 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  135 (164)
T cd04101          56 IFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQ  135 (164)
T ss_pred             EEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHH
Confidence            57765556666667788999999999999976532111 111 11111 1368999999999997543221  1112222


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      ..+.+++.+||+++.|++++++.+.+.
T Consensus       136 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~  162 (164)
T cd04101         136 ANQLKFFKTSALRGVGYEEPFESLARA  162 (164)
T ss_pred             HcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence            345678999999999999999888654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.56  E-value=3.5e-07  Score=88.03  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHc-----cCCCEEEEecC
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQ-----QNCPSFGVNSH  112 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi~iSa~  112 (298)
                      .....+..+|++|+|+|+..+.+..+..+..++...++|+++|+||+|+.+.+..+...+.+..     ...+++++||+
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~  327 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL  327 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence            3445788999999999999988777766655544468999999999999865544444444321     13589999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q 022351          113 NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.|++++++.+.+....
T Consensus       328 ~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        328 TGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999877655

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=1.7e-07  Score=89.86  Aligned_cols=120  Identities=22%  Similarity=0.189  Sum_probs=88.6

Q ss_pred             HHHhhhcceecccCCC-------------ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc
Q 022351           10 KLAREIGTAVSQKKGG-------------GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR   76 (298)
Q Consensus        10 ~~~~~~g~~~~~~~~~-------------~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~   76 (298)
                      +|+||.|.+...+-..             -.-||| ..+.-.+.+.+..||-+|+||||..+...+-..-..+..+.+..
T Consensus       101 ~vERERGITIkaQtasify~~~~~ylLNLIDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~  179 (650)
T KOG0462|consen  101 QVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA  179 (650)
T ss_pred             hhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe
Confidence            6789999999887752             123899 56778888899999999999999987665443221111146889


Q ss_pred             EEEEEecCCCCC--hhhHH-HHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           77 RILVLNKMDLAS--PTQFK-EWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        77 ~IiVlNK~DL~~--~~~~~-~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +|.|+||+|+-.  ++.+. ...+.|.....+++.+||++|.++++++++|.+.++.
T Consensus       180 iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  180 IIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             EEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            999999999954  34333 3333443344589999999999999999999887654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.56  E-value=3e-07  Score=87.87  Aligned_cols=102  Identities=20%  Similarity=0.212  Sum_probs=70.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCCC-CCCcEEEEEecCCCCChhhHH----HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQFK----EWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~~~----~~~~~~~  100 (298)
                      .-||| .++.+.+...+..+|.+++|+|++.+. .....+....+.. ..+++++++||+|+.+.+...    +..+.+.
T Consensus        86 DtPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~  164 (406)
T TIGR03680        86 DAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVK  164 (406)
T ss_pred             ECCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhh
Confidence            34777 678888888899999999999999764 3332222222112 346789999999998754322    2222222


Q ss_pred             c---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 Q---QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .   .+.+++++||+++.|+++|+++|...++
T Consensus       165 ~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       165 GTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             hcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            2   1457899999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.56  E-value=4.1e-07  Score=75.29  Aligned_cols=83  Identities=17%  Similarity=0.056  Sum_probs=56.8

Q ss_pred             CCCeEEEEEeCCCCCCc-cc--HHHhccCCC--CCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           45 LVDIILEVRDARIPFSS-EF--DQLRNHHPF--SSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        45 ~aDlVl~VvDa~~p~~~-~~--~~l~~~l~~--~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      .+|++++|+|+..+... ..  ..+...+..  .+.|+++|+||+|+.+........++......+++.+||+++.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            36899999999865431 11  122222222  37999999999999866544432233323456899999999999999


Q ss_pred             HHHHHHHH
Q 022351          120 FLKFLQAH  127 (298)
Q Consensus       120 L~~~l~~~  127 (298)
                      +++++.+.
T Consensus       159 l~~~l~~~  166 (168)
T cd01897         159 VKNKACEL  166 (168)
T ss_pred             HHHHHHHH
Confidence            99988654

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.56  E-value=5.1e-07  Score=73.31  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      .......+.++|++++|+|+..+....+..+...  ..++|+++|+||+|+.+....     .....+.+++.+||.++.
T Consensus        71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~  143 (157)
T cd04164          71 IERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGE  143 (157)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCC
Confidence            3455567889999999999998766655544433  367999999999999875543     222345689999999999


Q ss_pred             CHHHHHHHHHHH
Q 022351          116 NVKEFLKFLQAH  127 (298)
Q Consensus       116 gi~~L~~~l~~~  127 (298)
                      |++++.++|.+.
T Consensus       144 ~v~~l~~~l~~~  155 (157)
T cd04164         144 GLDELKEALLEL  155 (157)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.56  E-value=3.4e-07  Score=85.15  Aligned_cols=94  Identities=19%  Similarity=0.283  Sum_probs=64.8

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCccc-HHH----hccCC-CCCCcEEEEEecCCCCChhhHH-HHHH-HHHccCCCEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEF-DQL----RNHHP-FSSSRRILVLNKMDLASPTQFK-EWIT-FFDQQNCPSFG  108 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l----~~~l~-~~~k~~IiVlNK~DL~~~~~~~-~~~~-~~~~~~~~vi~  108 (298)
                      .++.+.+++++++++|+|+..+.+..+ ..+    ..+.. ..++|+++|+||+|+.+..... ...+ ++...+.++++
T Consensus       228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~  307 (335)
T PRK12299        228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFL  307 (335)
T ss_pred             HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEE
Confidence            455667889999999999986432111 112    22211 1368999999999997654322 2222 23344578999


Q ss_pred             EecCCCcCHHHHHHHHHHHHHh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +||++++|+++++++|.+.+.+
T Consensus       308 iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        308 ISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEcCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887765

>cd00879 Sar1 Sar1 subfamily

Probab=98.55  E-value=2.3e-07  Score=78.75  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--ccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS--EFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFDQ  101 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~--~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~  101 (298)
                      |..+++.........++..+|.+++|+|+.++...  ....+...+.   ..+.|+++++||+|+......++..+.+..
T Consensus        68 ~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~  147 (190)
T cd00879          68 FDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGL  147 (190)
T ss_pred             EECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc
Confidence            44333345555566788999999999999864221  1122222221   246899999999999643222333333311


Q ss_pred             ----------------cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          102 ----------------QNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       102 ----------------~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                                      ...+++.+||+++.|++++++++.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                            11357899999999999999998653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04128 Spg1 Spg1p

Probab=98.55  E-value=3.4e-07  Score=77.76  Aligned_cols=105  Identities=15%  Similarity=0.070  Sum_probs=67.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCCh----h--hHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASP----T--QFKEWI   96 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~----~--~~~~~~   96 (298)
                      -|..+...+........+..+|++++|+|..++.+..+  ..+..+.. ....+.++|.||+||...    +  ...+..
T Consensus        53 iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~  132 (182)
T cd04128          53 IWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQA  132 (182)
T ss_pred             EEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHH
Confidence            47766656665556678999999999999987643222  11111111 122334789999999521    1  111122


Q ss_pred             -HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           97 -TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        97 -~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                       ++.+..+.+++.+||+++.|++++++.+.+.+.+
T Consensus       133 ~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         133 RKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             2223445678999999999999999998876654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=8.1e-08  Score=88.76  Aligned_cols=60  Identities=27%  Similarity=0.454  Sum_probs=46.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEcc----------C--C-----CE
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIAS----------H--P-----NI  202 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~----------~--~-----~~  202 (298)
                      .+++++||.||||||||+|+|+.           . .+..+++|+||.++..  +.+..          .  +     .+
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~-----------~-~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~v   69 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTK-----------A-GAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPV   69 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHc-----------C-CccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeee
Confidence            36899999999999999999993           2 2788999999988763  22211          1  1     48


Q ss_pred             EEEeCCCCCCC
Q 022351          203 YVLDTPGILPP  213 (298)
Q Consensus       203 ~liDTPGi~~~  213 (298)
                      .++|.+|+...
T Consensus        70 e~vDIAGLV~G   80 (372)
T COG0012          70 EFVDIAGLVKG   80 (372)
T ss_pred             EEEEecccCCC
Confidence            89999999874

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.54  E-value=2.8e-07  Score=85.52  Aligned_cols=92  Identities=20%  Similarity=0.343  Sum_probs=64.3

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCC--cc--cH----HHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCCCE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFS--SE--FD----QLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPS  106 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~--~~--~~----~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~~v  106 (298)
                      ....+.++++|++++|+|+.....  ..  ..    ++..+.. ..++|+++|+||+|+.+....+++.+.+. ..+.++
T Consensus       227 ~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~v  306 (329)
T TIGR02729       227 HRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPV  306 (329)
T ss_pred             HHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcE
Confidence            345566889999999999985411  11  11    1222211 14789999999999987655555555553 335689


Q ss_pred             EEEecCCCcCHHHHHHHHHHHH
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +++||++++|++++++.+.+.+
T Consensus       307 i~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       307 FPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             EEEEccCCcCHHHHHHHHHHHh
Confidence            9999999999999999987653

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.54  E-value=5.7e-07  Score=73.78  Aligned_cols=101  Identities=16%  Similarity=0.025  Sum_probs=68.0

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHH---HhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQ---LRNHHPFSSSRRILVLNKMDLASP--TQFKEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~---l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~~~  100 (298)
                      .||+ ..........+..+|.+++|+|...+.+..  ...   +.......++|+++|+||+|+...  ...........
T Consensus        55 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~  133 (164)
T cd04139          55 TAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR  133 (164)
T ss_pred             CCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence            3454 555556667899999999999987653211  111   222211257999999999999762  12223333333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ..+.+++.+||+++.|++++++.+.+.+.
T Consensus       134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         134 QWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             HhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999876553

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04121 Rab40 Rab40 subfamily

Probab=98.54  E-value=4.6e-07  Score=77.52  Aligned_cols=103  Identities=17%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~   98 (298)
                      -|...++.+........+..+|.+|+|+|...+.+..+     .++...  ..+.|++||.||+||....  ..++..++
T Consensus        59 iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~  136 (189)
T cd04121          59 LWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAY  136 (189)
T ss_pred             EEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHH
Confidence            48876667766667778899999999999987644322     122222  2478999999999996421  12222333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+.+++.+||+++.|++++++.+.+.+..
T Consensus       137 a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         137 AERNGMTFFEVSPLCNFNITESFTELARIVLM  168 (189)
T ss_pred             HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            34456789999999999999999999876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01861 Rab6 Rab6 subfamily

Probab=98.54  E-value=2e-07  Score=76.50  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=37.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi  210 (298)
                      +|+++|.+|||||||+|+|++            .....+..|++|.+...  +.+.+. -.+.++||||-
T Consensus         2 ki~liG~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~   59 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMY------------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ   59 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHc------------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence            689999999999999999983            12223455666655443  222221 14789999994

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.53  E-value=3.5e-07  Score=75.38  Aligned_cols=103  Identities=21%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      |..+.+.+........+..+|.+++|+|+..+.+...     ..+.+.....+.|+++|.||+|+.+..  ..+......
T Consensus        53 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~  132 (164)
T smart00173       53 LDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA  132 (164)
T ss_pred             EECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH
Confidence            4444434555555567889999999999986532111     112222222468999999999997532  112222233


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +..+.+++.+||+++.|++++++.+.+.+.
T Consensus       133 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      133 RQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             HHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            344578999999999999999999876553

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.53  E-value=5.4e-07  Score=73.54  Aligned_cols=82  Identities=16%  Similarity=0.083  Sum_probs=58.4

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCCCEEEEecCCCcCHHHHHH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLK  122 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~  122 (298)
                      +.+|++++|+|+..+...  ..+...+...++|+++|+||+|+.+......+.+.+. ..+.+++++||.++.|++++++
T Consensus        73 ~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          73 EKPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             CCCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            599999999999864321  2222222235799999999999976543333333332 3467899999999999999998


Q ss_pred             HHHHH
Q 022351          123 FLQAH  127 (298)
Q Consensus       123 ~l~~~  127 (298)
                      .+.+.
T Consensus       151 ~l~~~  155 (158)
T cd01879         151 AIAEL  155 (158)
T ss_pred             HHHHH
Confidence            88764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PTZ00369 Ras-like protein; Provisional

Probab=98.53  E-value=3.5e-07  Score=77.90  Aligned_cols=104  Identities=21%  Similarity=0.064  Sum_probs=69.3

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      |..++..+.......++..+|++++|+|+.++.+..+     ..+.+.....+.|+++|.||+|+.+...  ........
T Consensus        58 ~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~  137 (189)
T PTZ00369         58 LDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA  137 (189)
T ss_pred             EeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence            6554446666666678999999999999987533111     1222222234789999999999854321  11222222


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +..+.+++.+||+++.|+++++.++.+.+..
T Consensus       138 ~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        138 KSFGIPFLETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            3345688999999999999999988766544

>cd01865 Rab3 Rab3 subfamily

Probab=98.52  E-value=8.8e-07  Score=73.41  Aligned_cols=104  Identities=15%  Similarity=0.064  Sum_probs=68.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      -|..++..+........+..+|.+++|+|...+.+... ..+...+   .....|+++|.||+|+.+...  .+...+..
T Consensus        54 l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  133 (165)
T cd01865          54 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLA  133 (165)
T ss_pred             EEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence            45554445555556678999999999999876422111 1111111   113688999999999975432  22222333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ...+++++.+||+++.|++++++.+.+.+.
T Consensus       134 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         134 DQLGFEFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             HHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345678999999999999999999876653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.52  E-value=6.9e-07  Score=74.98  Aligned_cols=105  Identities=18%  Similarity=0.096  Sum_probs=71.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~   98 (298)
                      -|..+...+........+..+|.+++|+|..++.+....     .+.......+.|+++|.||+|+.....+  ++..+.
T Consensus        54 i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~  133 (172)
T cd04141          54 ILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL  133 (172)
T ss_pred             EEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH
Confidence            466555566655566789999999999999876543321     1222212247899999999998543211  122222


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+.+++.+||+++.|++++++++...+..
T Consensus       134 a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         134 AREFNCPFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             HHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33456789999999999999999998765543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04136 Rap_like Rap-like subfamily

Probab=98.52  E-value=3.5e-07  Score=75.13  Aligned_cols=101  Identities=19%  Similarity=0.072  Sum_probs=66.6

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~   99 (298)
                      |..+++.+.......++..+|.+++|+|..++.+..+     ..+.......+.|+++|.||+|+.+....  +......
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  133 (163)
T cd04136          54 LDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA  133 (163)
T ss_pred             EECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH
Confidence            6665555555555677899999999999976533211     11222212246899999999999653221  1111222


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      +..+.+++.+||+++.|++++++++.+.
T Consensus       134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         134 RQWGCPFYETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             HHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            2335678999999999999999988653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.51  E-value=7.8e-07  Score=73.04  Aligned_cols=104  Identities=19%  Similarity=0.091  Sum_probs=70.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HH-hccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QL-RNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l-~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..+...+........+..+|++++|+|++++.+.... .+ ..+.  ...+.|+++|.||+|+.+..  ..+...+..
T Consensus        53 l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~  132 (164)
T smart00175       53 IWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA  132 (164)
T ss_pred             EEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH
Confidence            444444456666677889999999999999875432211 11 1111  11478999999999987532  222233333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +..+.+++.+|+.++.|++++++.+.+.+.
T Consensus       133 ~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      133 EEHGLPFFETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            345678999999999999999999987654

Rab GTPases are implicated in vesicle trafficking.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.51  E-value=6.7e-07  Score=76.88  Aligned_cols=105  Identities=16%  Similarity=0.084  Sum_probs=69.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCCh--hhHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASP--TQFKEW   95 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~--~~~~~~   95 (298)
                      -|..++..+........+..+|.+|+|+|...+.+-.+     ..+...+.   ..+.|+++|.||+|+.+.  ...++.
T Consensus        54 l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~  133 (201)
T cd04107          54 LWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM  133 (201)
T ss_pred             EEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH
Confidence            35544435555556678999999999999987643221     12222111   246899999999999631  122233


Q ss_pred             HHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           96 ITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        96 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .++.+..+ ..++.+||+++.|+++++++|.+.+..
T Consensus       134 ~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         134 DQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             HHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            33333445 478999999999999999998876643

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=98.51  E-value=3.2e-07  Score=75.76  Aligned_cols=103  Identities=17%  Similarity=0.029  Sum_probs=67.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~   98 (298)
                      -|..+++.+........+..+|.+++|+|...+.+..+     ..+.......+.|+++|.||+|+.+....  +...+.
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  132 (164)
T cd04175          53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL  132 (164)
T ss_pred             EEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHH
Confidence            36655545555555667899999999999875432211     11222212357899999999999643211  111122


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+..+.+++.+||+++.|+++++.++.+.+
T Consensus       133 ~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         133 ARQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             HHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            234457899999999999999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.51  E-value=4.5e-07  Score=75.05  Aligned_cols=99  Identities=17%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~  100 (298)
                      .||+ .+........+..+|.+++|+|+.++.+..+  .   .+..+ ...+.|+++|.||+|+.....  .+......+
T Consensus        58 ~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~  135 (166)
T cd01869          58 TAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD  135 (166)
T ss_pred             CCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH
Confidence            4565 4566666778999999999999976432111  1   11111 114689999999999864422  122223333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ..+.+++.+||+++.|+++++..+.+.+
T Consensus       136 ~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         136 ELGIPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             HcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence            4567899999999999999999887655

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.50  E-value=5.2e-07  Score=77.93  Aligned_cols=103  Identities=13%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+...+.......++..+|++|+|+|+..+.+...     ..+...  ..+.|+++|.||+||.......+..+..+
T Consensus        48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~~~~  125 (200)
T smart00176       48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKDRKVKAKSITFHR  125 (200)
T ss_pred             EEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCCHHHHHHHH
Confidence            57766656666666678999999999999987533221     112222  14789999999999864321122223333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..++.++.+||+++.|+++++.++.+.+.+
T Consensus       126 ~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      126 KKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            456789999999999999999999876643

Ran is involved in the active transport of proteins through nuclear pores.

>cd04120 Rab12 Rab12 subfamily

Probab=98.50  E-value=6.3e-07  Score=77.51  Aligned_cols=104  Identities=14%  Similarity=0.053  Sum_probs=71.5

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HHhccC---CCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QLRNHH---PFSSSRRILVLNKMDLASPTQF--KEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~~l---~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~   99 (298)
                      -|..+++.+.......++..+|.+|+|+|..++.+..+. .+...+   ...+.|+++|.||+||.....+  +...++.
T Consensus        53 iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a  132 (202)
T cd04120          53 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA  132 (202)
T ss_pred             EEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH
Confidence            588777777777777899999999999999876432221 111111   1246899999999999643322  1112222


Q ss_pred             Hc-cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQ-QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~-~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ++ .+..++.+||+++.|++++++++.+.+.
T Consensus       133 ~~~~~~~~~etSAktg~gV~e~F~~l~~~~~  163 (202)
T cd04120         133 QQITGMRFCEASAKDNFNVDEIFLKLVDDIL  163 (202)
T ss_pred             HhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            22 2567899999999999999998876654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04109 Rab28 Rab28 subfamily

Probab=98.50  E-value=6.6e-07  Score=77.91  Aligned_cols=105  Identities=18%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC--CCCCcEEEEEecCCCCChhh--HHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP--FSSSRRILVLNKMDLASPTQ--FKEWI   96 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~--~~~k~~IiVlNK~DL~~~~~--~~~~~   96 (298)
                      -|..++.......+...+..+|++|+|+|+..+.+..+     ..+.....  ..+.|+++|.||+||.....  .+...
T Consensus        54 i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~  133 (215)
T cd04109          54 VWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA  133 (215)
T ss_pred             EEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH
Confidence            46655556666667778999999999999987533221     11222211  12357899999999974321  12222


Q ss_pred             HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           97 TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        97 ~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+..+.+++.+||+++.|++++++.+.+.+..
T Consensus       134 ~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         134 RFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2223345678999999999999999999876543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01863 Rab18 Rab18 subfamily

Probab=98.50  E-value=5.8e-07  Score=73.85  Aligned_cols=100  Identities=15%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~  100 (298)
                      |..+...+........++.+|.+++|+|+..+.+...     ..+..+....+.|+++|.||+|+.... ..+...++..
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~  133 (161)
T cd01863          54 WDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR  133 (161)
T ss_pred             EECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH
Confidence            3433335555556677899999999999876533211     112223223578999999999997332 2233333333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      ..+.+++.+|++++.|++++++.+.+
T Consensus       134 ~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863         134 KHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             HcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            45678999999999999999988754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.50  E-value=3.8e-07  Score=74.78  Aligned_cols=97  Identities=16%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhcc---CCCCCCcEEEEEecCCCCChhhHHHHHHHHH--
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNH---HPFSSSRRILVLNKMDLASPTQFKEWITFFD--  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~---l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--  100 (298)
                      .||+ .+........+..+|++++|+|+..+.....  ..+..+   ....+.|+++|+||+|+.......+..+.+.  
T Consensus        50 ~~G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~  128 (158)
T cd00878          50 VGGQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLE  128 (158)
T ss_pred             CCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChh
Confidence            4666 4444556678899999999999987522111  112221   1135789999999999976442333333332  


Q ss_pred             ---ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 ---QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ---~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                         ....+++.+||+++.|++++++.|.
T Consensus       129 ~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         129 KILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             hccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence               1234689999999999999988875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01850 CDC_Septin CDC/Septin

Probab=98.49  E-value=3.6e-07  Score=82.84  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -.++|+++|.+|+|||||+|+|++
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~   26 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFN   26 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHc
Confidence            357999999999999999999985

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01892 Miro2 Miro2 subfamily

Probab=98.49  E-value=1.9e-07  Score=78.06  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=65.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC-CCCCCcEEEEEecCCCCChhhH--HHHHHHHHc
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH-PFSSSRRILVLNKMDLASPTQF--KEWITFFDQ  101 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l-~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~  101 (298)
                      -|..++..+.......++..+|++++|+|+.++.+... ..+...+ ...+.|+++|.||+|+.+....  ....++.+.
T Consensus        58 ~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  137 (169)
T cd01892          58 LREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK  137 (169)
T ss_pred             EEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHH
Confidence            35555545544444556899999999999987632211 1222222 1247899999999999643211  111122223


Q ss_pred             cCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351          102 QNC-PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       102 ~~~-~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+. .++.+||+++.|++++++.+.+.+
T Consensus       138 ~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         138 LGLPPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence            344 458999999999999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK04213 GTP-binding protein; Provisional

Probab=98.48  E-value=9.4e-07  Score=75.74  Aligned_cols=88  Identities=10%  Similarity=0.025  Sum_probs=58.1

Q ss_pred             hcCCCCeEEEEEeCCCCCCc-----------ccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc--c----
Q 022351           42 RMPLVDIILEVRDARIPFSS-----------EFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ--Q----  102 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~-----------~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~--~----  102 (298)
                      .+..+++|++|+|+......           .+..+...+...++|+++|+||+|+.+..  ..+++.+.+..  .    
T Consensus        87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  166 (201)
T PRK04213         87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW  166 (201)
T ss_pred             hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence            45678999999998642111           11222333223579999999999997543  23344333321  0    


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+++++||+++ |+++++++|.+.+.+
T Consensus       167 ~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        167 QDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            125899999999 999999999887655

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.48  E-value=1.2e-06  Score=73.43  Aligned_cols=105  Identities=23%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh-ccCC---CCCCcEEEEEecCCCCChhhH---H-HHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR-NHHP---FSSSRRILVLNKMDLASPTQF---K-EWI   96 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~-~~l~---~~~k~~IiVlNK~DL~~~~~~---~-~~~   96 (298)
                      -|..+++.+........+..+|++++|+|+..+.+... ..+. .+..   ....|+++|.||+|+.+....   + ...
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~  132 (170)
T cd04108          53 LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAI  132 (170)
T ss_pred             EEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHH
Confidence            57766656666666778999999999999976422211 1111 1111   123568999999999654221   1 111


Q ss_pred             HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           97 TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        97 ~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ....+.+.+++.+||+++.|++++++.+.+.+.+
T Consensus       133 ~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         133 KLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            2223345678999999999999999999887755

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.48  E-value=7.7e-07  Score=76.36  Aligned_cols=103  Identities=17%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCCh-hh--HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASP-TQ--FKEWITF   98 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~-~~--~~~~~~~   98 (298)
                      |..+++.+.......++..+|++++|+|+.++.+...     ..+.......+.|+++|+||+|+.+. ..  .+...+.
T Consensus        52 ~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~  131 (198)
T cd04147          52 LDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALST  131 (198)
T ss_pred             EECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHH
Confidence            5544434444444467899999999999986532221     12222222357999999999999753 21  1122222


Q ss_pred             HH-ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           99 FD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        99 ~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .. ..+..++.+||+++.|++++++++.+.+.
T Consensus       132 ~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         132 VELDWNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             HHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            21 23457899999999999999999876543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.48  E-value=9.8e-07  Score=72.47  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC--CCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH--PFSSSRRILVLNKMDLASPTQ--FKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~  100 (298)
                      -|..+.+.+........+..+|.+++|+|+..+.+... ..+...+  ...+.|+++|+||+|+.....  .++.....+
T Consensus        55 i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~  134 (162)
T cd04106          55 LWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAK  134 (162)
T ss_pred             EeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHH
Confidence            35554446666666778999999999999976532211 1111111  124789999999999975322  222333344


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      ..+++++.+|++++.|++++++.|.+
T Consensus       135 ~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         135 RLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             HcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            55778999999999999999988753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04122 Rab14 Rab14 subfamily

Probab=98.48  E-value=8.3e-07  Score=73.58  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh-cc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR-NH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~-~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      -|..+.+.+........+..+|.+++|+|+.++.+... ..+. ..  ....+.|+++|.||+|+.....  .+...+..
T Consensus        55 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~  134 (166)
T cd04122          55 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA  134 (166)
T ss_pred             EEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH
Confidence            45544445666666778999999999999987533211 1111 11  1124678999999999965321  12223333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +..+.+++.+||+++.|+++++..+...+
T Consensus       135 ~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         135 DENGLLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999887776543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.47  E-value=3.1e-07  Score=83.39  Aligned_cols=24  Identities=25%  Similarity=0.553  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++|+|+|.+|+|||||||+|++.
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~   27 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNS   27 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhc
Confidence            479999999999999999999964

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.47  E-value=1.1e-06  Score=83.69  Aligned_cols=102  Identities=13%  Similarity=0.059  Sum_probs=71.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH-----HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK-----EWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~-----~~~~~~~  100 (298)
                      .-||| .++...+...+..+|++++|+|+..+......++..++...++| +|+++||+|+.+.+...     +..+++.
T Consensus        81 DtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~  159 (394)
T PRK12736         81 DCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             ECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence            44888 57778888888999999999999987665555544444445777 57889999998543322     2223333


Q ss_pred             ccC-----CCEEEEecCCCc--------CHHHHHHHHHHHHH
Q 022351          101 QQN-----CPSFGVNSHNKD--------NVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~~--------gi~~L~~~l~~~i~  129 (298)
                      ..+     .+++++||.++.        ++..|++.+.+.++
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            333     478999999973        57788888877664

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.47  E-value=1.1e-06  Score=72.94  Aligned_cols=103  Identities=19%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh-cc--CCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR-NH--HPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~-~~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..++..+........+..+|++++|+|+.++.+-.. ..+. .+  ....+.|+++|.||+|+....  ..+...+..
T Consensus        56 l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  135 (167)
T cd01867          56 IWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALA  135 (167)
T ss_pred             EEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence            45544445555556678999999999999976533111 1111 11  112468999999999997432  222233333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +..+.+++.+||+++.|+++++..+.+.+
T Consensus       136 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         136 DEYGIKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            34566889999999999999999887665

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.47  E-value=2.9e-08  Score=82.16  Aligned_cols=80  Identities=20%  Similarity=0.140  Sum_probs=56.7

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH-HccCCCEEEEecCCCcCHHHHH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFL  121 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~  121 (298)
                      -.+.|+|+.|+|++..  .++..+...+.+.++|.++++||+|++....+.-..+.+ +..+.+++++||.+++|+++|+
T Consensus        76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   76 SEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             HTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             hcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            3789999999999852  334444333335789999999999987654322111222 2357899999999999999998


Q ss_pred             HHH
Q 022351          122 KFL  124 (298)
Q Consensus       122 ~~l  124 (298)
                      +.|
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04123 Rab21 Rab21 subfamily

Probab=98.47  E-value=1.1e-06  Score=71.75  Aligned_cols=101  Identities=15%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+............+..+|.+++|+|+.++.+...     ..+..... .+.|+++|+||+|+.....  .+...+.
T Consensus        53 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~  131 (162)
T cd04123          53 IWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEY  131 (162)
T ss_pred             EEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHH
Confidence            45554444444455566889999999999876532111     11222221 3689999999999975322  2233333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .+..+.+++.+|++++.|++++++++.+.
T Consensus       132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123         132 AKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            44456788999999999999999998654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.47  E-value=5e-07  Score=75.29  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=68.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|....+.+........+..+|++|+|+|...+.+..+     ..+...  ..+.|+++|.||+|+..........+..+
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~  130 (166)
T cd00877          53 VWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CGNIPIVLCGNKVDIKDRKVKAKQITFHR  130 (166)
T ss_pred             EEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhcccccCCHHHHHHHH
Confidence            45554444444434467889999999999986543222     112222  13799999999999974332122223333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+.+++.+||+++.|+++++++|.+.+.+
T Consensus       131 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         131 KKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             HcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            445679999999999999999999876643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.46  E-value=9.3e-07  Score=88.30  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQNCP  105 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~~~  105 (298)
                      ||| ..+...+...+..+|.+|+|+|++.+..........++...+.|+++|+||+|+.....   .+++.+.+.-...+
T Consensus        82 PGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~  160 (600)
T PRK05433         82 PGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASD  160 (600)
T ss_pred             CCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcce
Confidence            677 56777888899999999999999987654433222222235789999999999864321   12222222111124


Q ss_pred             EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          106 SFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       106 vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ++++||+++.|+++|+++|.+.++.
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCcc
Confidence            8999999999999999999887765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.46  E-value=1.2e-07  Score=82.19  Aligned_cols=68  Identities=22%  Similarity=0.209  Sum_probs=42.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh-cchhhhh----------cCCc--c------ceeecCCCCeeeeeEEEEE-ccCCCEE
Q 022351          144 TVMLLGIPNVGKSALANSLHQI-GRITAAE----------KGKL--R------HATVSPQPGETKDIYSLKI-ASHPNIY  203 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~----------~~~~--~------~~~~~~~pg~T~~~~~~~~-~~~~~~~  203 (298)
                      +|+++|.+|+|||||+|+|+.. +.+....          .++.  +      .......+|+|++.....+ ..+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            4799999999999999999743 2222100          0000  0      0011133788888765433 3445799


Q ss_pred             EEeCCCCC
Q 022351          204 VLDTPGIL  211 (298)
Q Consensus       204 liDTPGi~  211 (298)
                      |+||||..
T Consensus        81 liDTpG~~   88 (208)
T cd04166          81 IADTPGHE   88 (208)
T ss_pred             EEECCcHH
Confidence            99999974

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01861 Rab6 Rab6 subfamily

Probab=98.46  E-value=5.8e-07  Score=73.74  Aligned_cols=101  Identities=17%  Similarity=0.091  Sum_probs=67.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC--CCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF--SSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~--~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..++..+....+...+..+|++++|+|+..+.+..+  ..+..+...  .+.|+++|+||+|+....  ..+......
T Consensus        53 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~  132 (161)
T cd01861          53 LWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKA  132 (161)
T ss_pred             EEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHH
Confidence            46444446666677788999999999999986532211  112222111  358999999999995332  122222233


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      +..+.+++.+||+++.|++++.+++.+
T Consensus       133 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         133 KELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             HHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            344678899999999999999998865

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04112 Rab26 Rab26 subfamily

Probab=98.45  E-value=1.4e-06  Score=74.26  Aligned_cols=101  Identities=10%  Similarity=0.036  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~  100 (298)
                      .||+ .+........+..+|++++|+|+..+.+..+     ..+.... ..+.|+++|+||+|+.....  .++......
T Consensus        57 t~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~  134 (191)
T cd04112          57 TAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAK  134 (191)
T ss_pred             CCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHH
Confidence            3555 4454555678899999999999976532111     1122221 23689999999999964321  122222223


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+.+++.+||+++.|+++++..+.+.+.+
T Consensus       135 ~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         135 EYGVPFMETSAKTGLNVELAFTAVAKELKH  164 (191)
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            446689999999999999999999887765

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.44  E-value=9.2e-07  Score=88.24  Aligned_cols=99  Identities=16%  Similarity=0.114  Sum_probs=70.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-HhccCCCCCCcEEEEEecCCCCChh--h-HHHHHHHHHccC-
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-LRNHHPFSSSRRILVLNKMDLASPT--Q-FKEWITFFDQQN-  103 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l~~~l~~~~k~~IiVlNK~DL~~~~--~-~~~~~~~~~~~~-  103 (298)
                      ||| .++...+...+..+|.+|+|+|++.+....... +...+ ..+.|+++|+||+|+....  . .+++.+.+ ... 
T Consensus        78 PG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~~~ipiIiViNKiDl~~~~~~~~~~el~~~l-g~~~  154 (595)
T TIGR01393        78 PGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-ENDLEIIPVINKIDLPSADPERVKKEIEEVI-GLDA  154 (595)
T ss_pred             CCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-HcCCCEEEEEECcCCCccCHHHHHHHHHHHh-CCCc
Confidence            566 667788888999999999999999875544322 22222 2578999999999986432  1 12333333 111 


Q ss_pred             CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          104 CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++||+++.|+++|++.|.+.++.
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            248999999999999999999887764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.44  E-value=6.6e-07  Score=74.34  Aligned_cols=89  Identities=19%  Similarity=0.266  Sum_probs=60.8

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCC-----CcccH------HHhccCC------CCCCcEEEEEecCCCCChhhHHHHH--HH
Q 022351           38 AIADRMPLVDIILEVRDARIPF-----SSEFD------QLRNHHP------FSSSRRILVLNKMDLASPTQFKEWI--TF   98 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~-----~~~~~------~l~~~l~------~~~k~~IiVlNK~DL~~~~~~~~~~--~~   98 (298)
                      .+...+..+|++++|+|+..+.     .....      .+.....      ..++|+++|+||+|+........+.  ..
T Consensus        67 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~  146 (176)
T cd01881          67 QFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL  146 (176)
T ss_pred             HHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH
Confidence            4456678899999999998763     22111      1111111      1378999999999998766555441  22


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      ....+.+++.+||+++.|++++++.+..
T Consensus       147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         147 ALEEGAEVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             hcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence            2234567999999999999999988753

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01866 Rab2 Rab2 subfamily

Probab=98.44  E-value=5e-07  Score=75.19  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGI  210 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi  210 (298)
                      .++++++|.||||||||+|++.+          ........+..|.+.....+.+.... .+.|+||||-
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   63 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTD----------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ   63 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            46899999999999999999983          11111122333444333334343222 4789999994

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01863 Rab18 Rab18 subfamily

Probab=98.44  E-value=4.9e-07  Score=74.28  Aligned_cols=59  Identities=20%  Similarity=0.329  Sum_probs=39.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ++++++|.+|||||||+|+|..          ........+.+|.+.....+.+... -.+.++||||..
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTD----------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc----------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence            3789999999999999999983          1122234455665555444433321 247899999954

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.44  E-value=1.2e-06  Score=83.08  Aligned_cols=94  Identities=17%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCC----CCcccHHHhccCCC-----CCCcEEEEEecCCCCChhhHHHHHHHHH-ccC--C
Q 022351           37 RAIADRMPLVDIILEVRDARIP----FSSEFDQLRNHHPF-----SSSRRILVLNKMDLASPTQFKEWITFFD-QQN--C  104 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p----~~~~~~~l~~~l~~-----~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~--~  104 (298)
                      ..+.+.++++|++++|+|+...    .......+.+.+..     .++|.++|+||+|+.+...+.+.++.+. ..+  .
T Consensus       229 ~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~  308 (390)
T PRK12298        229 IRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEG  308 (390)
T ss_pred             HHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCC
Confidence            3455678999999999998721    11111222222111     3689999999999987655544444432 223  3


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++++||+++.|+++|++.|.+.+++
T Consensus       309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        309 PVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            68999999999999999999888765

>cd00880 Era_like Era (E

Probab=98.43  E-value=4e-07  Score=73.27  Aligned_cols=60  Identities=37%  Similarity=0.432  Sum_probs=43.5

Q ss_pred             EEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc--cCCCEEEEeCCCCCCCCCCC
Q 022351          147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA--SHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       147 vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~liDTPGi~~~~~~~  217 (298)
                      ++|.+|+|||||+|+|.+           ......+..+++|.........  ....+.++||||+.......
T Consensus         1 i~G~~gsGKstl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~   62 (163)
T cd00880           1 LFGRTNAGKSSLLNALLG-----------QEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG   62 (163)
T ss_pred             CcCCCCCCHHHHHHHHhC-----------ccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch
Confidence            589999999999999983           2334466777777776654332  24579999999998765433

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04144 Ras2 Ras2 subfamily

Probab=98.43  E-value=1e-06  Score=75.04  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=68.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCC--CCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHP--FSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~--~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      |..+.+.+........+..+|++|+|+|...+.+... ..    +.....  ..+.|+++|.||+|+.....+  ....+
T Consensus        52 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~  131 (190)
T cd04144          52 LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA  131 (190)
T ss_pred             EECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH
Confidence            6655546665555678999999999999876532211 11    211111  146899999999999643221  12222


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+..+.+++.+||+++.|+++++..+.+.+.+
T Consensus       132 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         132 LARRLGCEFIEASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             HHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            223346689999999999999999999876654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.42  E-value=5.8e-07  Score=73.91  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGI  210 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi  210 (298)
                      ++++++|.+|||||||+|+|++          ........+.+|.+.....+.+.... .+.|+||||-
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~   60 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVK----------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ   60 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence            5899999999999999999983          11112234444443333333333221 4779999994

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.42  E-value=1.4e-06  Score=83.37  Aligned_cols=91  Identities=15%  Similarity=0.273  Sum_probs=60.9

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCC--Cc--ccHHHhccCC-----CCCCcEEEEEecCCCCChh-hHHHHHHHHHccCCCE
Q 022351           37 RAIADRMPLVDIILEVRDARIPF--SS--EFDQLRNHHP-----FSSSRRILVLNKMDLASPT-QFKEWITFFDQQNCPS  106 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~--~~--~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~~~~v  106 (298)
                      ....+.+++++++++|+|+....  ..  ....+...+.     ..++|.+||+||+||.... ..+.+.+   ..+.++
T Consensus       228 ~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~---~l~~~i  304 (424)
T PRK12297        228 HQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE---KLGPKV  304 (424)
T ss_pred             HHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH---HhCCcE
Confidence            34456678899999999996431  11  1112222211     1479999999999984332 2223322   234679


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHh
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++||+++.|+++|++++.+.+.+
T Consensus       305 ~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        305 FPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999887765

>PRK11058 GTPase HflX; Provisional

Probab=98.42  E-value=2.3e-06  Score=82.11  Aligned_cols=97  Identities=18%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCC-
Q 022351           31 HMAAATRAIADRMPLVDIILEVRDARIPFSSEFD----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCP-  105 (298)
Q Consensus        31 hm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~-  105 (298)
                      ...+.+....+.+..+|++|+|+|+..|....+.    .+...+...++|+++|+||+|+.+....  ..+.. ..+.+ 
T Consensus       262 ~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~~-~~~~~~  338 (426)
T PRK11058        262 DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDRD-EENKPI  338 (426)
T ss_pred             HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHHH-hcCCCc
Confidence            3334455566778999999999999887543332    1222222347899999999999754211  11111 23444 


Q ss_pred             EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          106 SFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       106 vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.+||+++.|+++|++.|.+.+..
T Consensus       339 ~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        339 RVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            5889999999999999999887643

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.42  E-value=1.4e-06  Score=84.93  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             HhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHc-cCCCEEEEecCCCc
Q 022351           41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQ-QNCPSFGVNSHNKD  115 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~-~~~~vi~iSa~~~~  115 (298)
                      ..+..+|++++|+|+..+.+..+..+...+...++|+++|+||+||.+.+...    ...+.+.. ...+++++||+++.
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~  368 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR  368 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence            46789999999999998877665555444334689999999999998643221    12222222 23478999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 022351          116 NVKEFLKFLQAHVRN  130 (298)
Q Consensus       116 gi~~L~~~l~~~i~~  130 (298)
                      |++++++.+.+.+..
T Consensus       369 gv~~lf~~i~~~~~~  383 (472)
T PRK03003        369 AVDKLVPALETALES  383 (472)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999887765

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.42  E-value=1.7e-06  Score=73.53  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHH----HHHHccCCCEEEEecCCCcCHH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI----TFFDQQNCPSFGVNSHNKDNVK  118 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~----~~~~~~~~~vi~iSa~~~~gi~  118 (298)
                      .+.++++++|+|+..+.......+..++...+.|+++++||+|+.+....+...    +.+.....+++++||+++.|++
T Consensus       104 ~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~  183 (196)
T PRK00454        104 RENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGID  183 (196)
T ss_pred             CccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHH
Confidence            345578999999887766554444444434578999999999998765433322    3332225689999999999999


Q ss_pred             HHHHHHHHHHH
Q 022351          119 EFLKFLQAHVR  129 (298)
Q Consensus       119 ~L~~~l~~~i~  129 (298)
                      ++.+.|.+.+.
T Consensus       184 ~l~~~i~~~~~  194 (196)
T PRK00454        184 ELRAAIAKWLA  194 (196)
T ss_pred             HHHHHHHHHhc
Confidence            99999987764

>PRK13768 GTPase; Provisional

Probab=98.42  E-value=7.6e-07  Score=79.71  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=62.7

Q ss_pred             HHHHHhcCC--CCeEEEEEeCCCCCCcccHHHhccCC-----CCCCcEEEEEecCCCCChhhHHHHHHHH----------
Q 022351           37 RAIADRMPL--VDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVLNKMDLASPTQFKEWITFF----------   99 (298)
Q Consensus        37 ~~i~~~l~~--aDlVl~VvDa~~p~~~~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~~~~~~~~----------   99 (298)
                      +.+.+.+..  .+++++|+|++.+....+.....++.     ..++|+++|+||+|+.+..+.+....++          
T Consensus       118 ~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l  197 (253)
T PRK13768        118 RKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEEL  197 (253)
T ss_pred             HHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHH
Confidence            334444444  89999999998755444332222211     3589999999999998765443322222          


Q ss_pred             ------------------HccC--CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 ------------------DQQN--CPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ------------------~~~~--~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                                        ++.+  .+++++|++++.|+++|+++|.+.++
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        198 KLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence                              1223  47899999999999999999987653

>cd01868 Rab11_like Rab11-like

Probab=98.41  E-value=1.9e-06  Score=71.17  Aligned_cols=102  Identities=19%  Similarity=0.068  Sum_probs=66.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..+.+.+........+..++.+++|+|+.++.+..+ ..+ ..+.  ...+.|+++|.||+|+....  ..+......
T Consensus        56 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~  135 (165)
T cd01868          56 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA  135 (165)
T ss_pred             EEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence            45544445555556678899999999999986533221 111 1111  11358999999999996532  122223333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      ...+.+++.+||+++.|++++++.+.+.
T Consensus       136 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         136 EKNGLSFIETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             HHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3446679999999999999999988654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04118 Rab24 Rab24 subfamily

Probab=98.40  E-value=1.6e-06  Score=73.74  Aligned_cols=105  Identities=16%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCC--CCCCcEEEEEecCCCCChh----h--HHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHP--FSSSRRILVLNKMDLASPT----Q--FKEWI   96 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~--~~~k~~IiVlNK~DL~~~~----~--~~~~~   96 (298)
                      -|..+...+........+..+|++++|+|...+.+..+ ..+...+.  ..+.|+++|.||+|+.+..    .  .++..
T Consensus        54 i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~  133 (193)
T cd04118          54 IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQ  133 (193)
T ss_pred             EEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHH
Confidence            46554444444444567889999999999976532211 11222111  2368999999999986432    1  12222


Q ss_pred             HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           97 TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        97 ~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ++....+.+++.+||+++.|++++++.+.+.+-.
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         134 DFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2233445678999999999999999999877644

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.40  E-value=6.7e-07  Score=73.57  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|++++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~   22 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCE   22 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999983

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04111 Rab39 Rab39 subfamily

Probab=98.40  E-value=1.9e-06  Score=74.89  Aligned_cols=105  Identities=21%  Similarity=0.114  Sum_probs=69.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+.+.+........+..+|.+++|+|..++.+..+     ..+.........|+++|.||+|+.+...  .+...++
T Consensus        56 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~  135 (211)
T cd04111          56 LWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL  135 (211)
T ss_pred             EEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH
Confidence            45544445565566678999999999999987532211     1122221123467789999999975321  1122222


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+.+++.+||+++.|++++++.|.+.+.+
T Consensus       136 ~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~  167 (211)
T cd04111         136 AKDLGMKYIETSARTGDNVEEAFELLTQEIYE  167 (211)
T ss_pred             HHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            23445789999999999999999999887665

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=98.40  E-value=1.4e-06  Score=72.47  Aligned_cols=103  Identities=16%  Similarity=0.071  Sum_probs=68.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-cC--CCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRN-HH--PFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      -|..++..+........++.+|++++|+|+.++.+... ..+.. +.  ...+.|+++|.||+|+.....  .+....+.
T Consensus        57 i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~  136 (168)
T cd01866          57 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA  136 (168)
T ss_pred             EEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence            45544445555556678899999999999986432211 11111 11  124689999999999974321  22233334


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ...+.+++.+||.++.|+++++..+...+
T Consensus       137 ~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         137 KEHGLIFMETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45567899999999999999998887654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd00154 Rab Rab family

Probab=98.40  E-value=1e-06  Score=71.20  Aligned_cols=96  Identities=20%  Similarity=0.102  Sum_probs=64.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-cCC--CCCCcEEEEEecCCCC-Chh-hHHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRN-HHP--FSSSRRILVLNKMDLA-SPT-QFKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~l~--~~~k~~IiVlNK~DL~-~~~-~~~~~~~~~~~~  102 (298)
                      ||+ ..........++++|++++|+|+..+..... ..+.. +..  ..+.|+++++||+|+. +.. ..+...+.....
T Consensus        57 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  135 (159)
T cd00154          57 AGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN  135 (159)
T ss_pred             CCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc
Confidence            454 5555667788999999999999986432111 11211 111  1368999999999996 222 223333334345


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      +.+++.+|+.++.|+++++++|.
T Consensus       136 ~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         136 GLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHh
Confidence            67899999999999999988874

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.40  E-value=4.4e-07  Score=82.53  Aligned_cols=62  Identities=27%  Similarity=0.442  Sum_probs=47.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--cc----------CC------C
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--AS----------HP------N  201 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~----------~~------~  201 (298)
                      ...+++++||.|||||||++|+|..            ..+..+++|.+|.++..-++  ..          ++      .
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~------------~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~   85 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTK------------SKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAF   85 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhc------------CCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeee
Confidence            4457999999999999999999983            23448999999999874332  11          11      4


Q ss_pred             EEEEeCCCCCCC
Q 022351          202 IYVLDTPGILPP  213 (298)
Q Consensus       202 ~~liDTPGi~~~  213 (298)
                      +.++|..|+...
T Consensus        86 l~v~DIAGLvkG   97 (391)
T KOG1491|consen   86 LTVYDIAGLVKG   97 (391)
T ss_pred             EEEEeecccccC
Confidence            889999999764

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.39  E-value=2.3e-07  Score=78.30  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=68.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..|+.......+..++..+|.||+|+|+.++..  .....+..++.   ..++|+++++||.|+.+....++..+.+.
T Consensus        62 ~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~  141 (175)
T PF00025_consen   62 IWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG  141 (175)
T ss_dssp             EEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred             EEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh
Confidence            45544434444455578899999999999986531  11122333322   24799999999999875433344444332


Q ss_pred             ------ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          101 ------QQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       101 ------~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                            ...+.++.+||.+|+|+.+.+++|.+.
T Consensus       142 l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  142 LEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             GGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             hhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence                  123468889999999999999999765

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.39  E-value=1e-06  Score=71.32  Aligned_cols=98  Identities=18%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH--
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD--  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--  100 (298)
                      +||+ .+....+...+..+|.+++|+|+..+.....  ..+..++.   ..++|+++|+||+|+.+........+.+.  
T Consensus        51 ~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  129 (159)
T cd04159          51 LGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK  129 (159)
T ss_pred             CCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc
Confidence            3555 5555666788999999999999986422111  12222221   24789999999999976544444433331  


Q ss_pred             ---ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 ---QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 ---~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                         ....+++.+|++++.|++++++++.+
T Consensus       130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         130 SITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence               12346799999999999999988853

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04176 Rap2 Rap2 subgroup

Probab=98.39  E-value=7.6e-07  Score=73.36  Aligned_cols=101  Identities=16%  Similarity=0.087  Sum_probs=66.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~   99 (298)
                      |...++.+.......++..+|.+++|+|..++.+-.+ .    .+.......++|+++|.||+|+.+...+  .......
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~  133 (163)
T cd04176          54 LDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA  133 (163)
T ss_pred             EECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH
Confidence            7766556666666677899999999999987532111 1    1222211257899999999999643221  1111222


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      ...+.+++.+||+++.|+++++.++.+.
T Consensus       134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         134 EEWGCPFMETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             HHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence            2345678999999999999999888643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.39  E-value=1.2e-06  Score=84.80  Aligned_cols=87  Identities=20%  Similarity=0.343  Sum_probs=65.0

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      ++.....+..+|++++|+|+..+.+..+..+...  ..++|+++|+||+|+.+.....      ...+.+++.+||+++.
T Consensus       285 i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~  356 (449)
T PRK05291        285 IERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGE  356 (449)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCC
Confidence            3445667899999999999988765443333222  3578999999999997654322      2334578999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 022351          116 NVKEFLKFLQAHVRN  130 (298)
Q Consensus       116 gi~~L~~~l~~~i~~  130 (298)
                      |+++|++.+.+.+..
T Consensus       357 GI~~L~~~L~~~l~~  371 (449)
T PRK05291        357 GIDELREAIKELAFG  371 (449)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999877643

>cd04114 Rab30 Rab30 subfamily

Probab=98.39  E-value=2.1e-06  Score=71.08  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHh---ccCCCCCCcEEEEEecCCCCChhhH-HHHHHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLR---NHHPFSSSRRILVLNKMDLASPTQF-KEWITFFD-  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~---~~l~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~-  100 (298)
                      |..+.+..........+..+|++++|+|++++.+... ..+.   ......+.|+++|.||+|+.+...+ ....+.+. 
T Consensus        61 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~  140 (169)
T cd04114          61 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD  140 (169)
T ss_pred             EECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH
Confidence            4444335566666788999999999999876532211 1121   1112246889999999999754321 22223332 


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .....++.+||+++.|++++++.+.+.
T Consensus       141 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         141 AQDMYYLETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             HcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            233578999999999999999988754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00154 Rab Rab family

Probab=98.39  E-value=6.8e-07  Score=72.32  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      ++|+++|.+|||||||+|+|..           .+... ..+..|.+.....+.... .-.+.++||||..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~   60 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVD-----------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE   60 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh-----------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence            3789999999999999999983           11111 123333333333333221 1247899999973

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01868 Rab11_like Rab11-like

Probab=98.39  E-value=8.2e-07  Score=73.33  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      .+++++|.||||||||+|+|.+          ........+..|++.....+.+... -.+.++||||...
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   64 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTR----------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER   64 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH
Confidence            5899999999999999999983          1111122233332222223333222 1478999999643

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03118 Rab family protein; Provisional

Probab=98.38  E-value=1.8e-06  Score=74.78  Aligned_cols=105  Identities=14%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhc----cCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRN----HHPFSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~----~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      -|..+.+.+........+..+|.+++|+|+..+.+..+.  .+..    +....+.|+++|.||+|+.....+  +....
T Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~  145 (211)
T PLN03118         66 IWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA  145 (211)
T ss_pred             EEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence            344444466666667789999999999999865332221  1111    111245789999999999653221  22233


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .....+..++.+||+++.|++++++.|.+.+.+
T Consensus       146 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~  178 (211)
T PLN03118        146 LAKEHGCLFLECSAKTRENVEQCFEELALKIME  178 (211)
T ss_pred             HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            333456678999999999999999999877654

>cd04110 Rab35 Rab35 subfamily

Probab=98.38  E-value=1.9e-06  Score=74.08  Aligned_cols=102  Identities=15%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC-CCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP-FSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ  102 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~  102 (298)
                      +||+ .+........+..+|.+++|+|+.++.+... ..+ ..+.. ....|+++|.||+|+.+...  .+.........
T Consensus        62 ~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~  140 (199)
T cd04110          62 TAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM  140 (199)
T ss_pred             CCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence            4454 4555556678999999999999987533211 111 11111 24689999999999975422  23333333345


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+++.+||+++.|++++++++.+.+-.
T Consensus       141 ~~~~~e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         141 GISLFETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             CCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence            6789999999999999999998876654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>CHL00071 tufA elongation factor Tu

Probab=98.38  E-value=1.8e-06  Score=82.66  Aligned_cols=89  Identities=12%  Similarity=-0.031  Sum_probs=63.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhHH-----HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQFK-----EWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~~-----~~~~~~   99 (298)
                      ..-||| .++.+.+...+..+|++++|+|+..+......++..++...++| +|+++||+|+.+.+...     +..+++
T Consensus        80 iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l  158 (409)
T CHL00071         80 VDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELL  158 (409)
T ss_pred             EECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            455898 57888888899999999999999987766655555544446778 66889999998654321     233334


Q ss_pred             HccC-----CCEEEEecCCCc
Q 022351          100 DQQN-----CPSFGVNSHNKD  115 (298)
Q Consensus       100 ~~~~-----~~vi~iSa~~~~  115 (298)
                      +..+     .+++++||.++.
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        159 SKYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HHhCCCCCcceEEEcchhhcc
Confidence            3333     478999998775

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.38  E-value=4.9e-07  Score=75.23  Aligned_cols=100  Identities=13%  Similarity=0.020  Sum_probs=64.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHH---
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFF---   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~---   99 (298)
                      -|..+.+.+.......++..+|.+++|+|+.++.....  ..+..++. ..++|+++|.||+|+..........+.+   
T Consensus        48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~  127 (164)
T cd04162          48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELE  127 (164)
T ss_pred             EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCCh
Confidence            45544445555556678999999999999987542111  12233322 2579999999999986544333322222   


Q ss_pred             ---HccCCCEEEEecCC------CcCHHHHHHHHH
Q 022351          100 ---DQQNCPSFGVNSHN------KDNVKEFLKFLQ  125 (298)
Q Consensus       100 ---~~~~~~vi~iSa~~------~~gi~~L~~~l~  125 (298)
                         ++.++.++.+||++      ++|++++++.+.
T Consensus       128 ~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         128 PIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             hhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence               23355678888887      888888877664

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04113 Rab4 Rab4 subfamily

Probab=98.38  E-value=1.9e-06  Score=70.83  Aligned_cols=97  Identities=20%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hcc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|.+++|+|+..+.+..+ ..+ ...  ....+.|+++|.||+|+.....  .+.........
T Consensus        57 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~  135 (161)
T cd04113          57 AGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQEN  135 (161)
T ss_pred             cch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc
Confidence            454 5555666678899999999999987543222 112 111  2235789999999999975321  22333344445


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      +.+++.+||+++.|++++++.+.+
T Consensus       136 ~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         136 GLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999998864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03118 Rab family protein; Provisional

Probab=98.37  E-value=7.9e-07  Score=77.08  Aligned_cols=61  Identities=25%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ..++|+++|.+|||||||+|+|+.           ......++..|++..+..+.+.+. ..+.|+||||...
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   74 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFIS-----------SSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER   74 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh-----------CCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence            457999999999999999999983           222334445555444444444322 2478999999644

>TIGR00092 GTP-binding protein YchF

Probab=98.36  E-value=5.1e-07  Score=84.41  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=45.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CCEEE
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PNIYV  204 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~~~l  204 (298)
                      +++++||.||||||||+|+|.+           .....++++|+||.++..  +.+.+.                ..+.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~-----------~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~   71 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTN-----------LLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF   71 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhC-----------CCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence            5899999999999999999983           233277888999887663  333332                14889


Q ss_pred             EeCCCCCCC
Q 022351          205 LDTPGILPP  213 (298)
Q Consensus       205 iDTPGi~~~  213 (298)
                      +|.||+...
T Consensus        72 ~DiaGlv~g   80 (368)
T TIGR00092        72 VDIAGLVGG   80 (368)
T ss_pred             Eeccccccc
Confidence            999999874

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.36  E-value=6e-06  Score=64.95  Aligned_cols=87  Identities=21%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCCCc
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHNKD  115 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~~~  115 (298)
                      ..+.-....+|++++|..+.+|.+...+-+...   ..+|+|-|++|+||..+++++.....+.+.|. ++|.+|+..+.
T Consensus        56 ~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~  132 (148)
T COG4917          56 HALITTLQDADVIIYVHAANDPESRFPPGFLDI---GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQ  132 (148)
T ss_pred             HHHHHHhhccceeeeeecccCccccCCcccccc---cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcc
Confidence            345566889999999999999887777766664   56789999999999977777766666766665 78999999999


Q ss_pred             CHHHHHHHHHH
Q 022351          116 NVKEFLKFLQA  126 (298)
Q Consensus       116 gi~~L~~~l~~  126 (298)
                      |+++|+++|..
T Consensus       133 gv~~l~~~L~~  143 (148)
T COG4917         133 GVEELVDYLAS  143 (148)
T ss_pred             cHHHHHHHHHh
Confidence            99999998864

>cd04155 Arl3 Arl3 subfamily

Probab=98.36  E-value=9.2e-07  Score=73.60  Aligned_cols=58  Identities=21%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ...++++++|.+|||||||+|.|.+           .......+..|.+..  .+... +..+.++||||..
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~-----------~~~~~~~~t~g~~~~--~i~~~-~~~~~~~D~~G~~   69 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLAS-----------EDISHITPTQGFNIK--TVQSD-GFKLNVWDIGGQR   69 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhc-----------CCCcccCCCCCcceE--EEEEC-CEEEEEEECCCCH
Confidence            4468999999999999999999983           222233344443322  22222 3357899999964

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.35  E-value=2e-06  Score=70.73  Aligned_cols=100  Identities=17%  Similarity=0.074  Sum_probs=66.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC--CCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP--FSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~--~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      .||+ .+........+..+|.+++|+|+..+.+-.. ..+ ..+..  ....|++++.||+|+.+..  ..+........
T Consensus        57 ~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  135 (163)
T cd01860          57 TAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE  135 (163)
T ss_pred             CCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH
Confidence            4565 4455555567889999999999986532211 111 11111  1467899999999987322  22233333444


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+.+++.+||+++.|++++++.+.+.+
T Consensus       136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         136 NGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999987653

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01864 Rab19 Rab19 subfamily

Probab=98.35  E-value=1.2e-06  Score=72.56  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+++|.+|+|||||+|++.
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~   24 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFK   24 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999997

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01893 Miro1 Miro1 subfamily

Probab=98.35  E-value=1.3e-06  Score=72.51  Aligned_cols=102  Identities=17%  Similarity=0.043  Sum_probs=65.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChhhH---HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPTQF---KEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~---~~~~~~   98 (298)
                      -|.+.........+...+..+|++++|+|+..+.+...  ..+...+.  ..+.|+++|.||+|+.+....   +.....
T Consensus        51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~  130 (166)
T cd01893          51 IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLP  130 (166)
T ss_pred             EEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHH
Confidence            45544334555556677899999999999987644332  11221111  247899999999999764321   221111


Q ss_pred             H-Hcc-C-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351           99 F-DQQ-N-CPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        99 ~-~~~-~-~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      + ... . .+++.+||+++.|++++.+.+...
T Consensus       131 ~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         131 IMNEFREIETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             HHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence            1 111 2 368899999999999999988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.35  E-value=1.2e-06  Score=76.59  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=70.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+++.+.......++..+|.+|+|+|...+.+..+     ..+...  ..+.|+++|.||+|+.......+...+.+
T Consensus        66 i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~~~~  143 (219)
T PLN03071         66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR  143 (219)
T ss_pred             EEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHHHHHH
Confidence            57666656665555567899999999999987533221     112222  24689999999999964321111223333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+.+++.+||+++.|+++++.+|.+.+.+
T Consensus       144 ~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             hcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence            456678999999999999999998876643

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.35  E-value=1.4e-06  Score=72.60  Aligned_cols=99  Identities=14%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD-  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-  100 (298)
                      |..+...+.......++..+|.+++|+|+..+....+  ..+..++.   ..++|+++|+||+|+.......+..+.+. 
T Consensus        48 ~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l  127 (167)
T cd04161          48 FDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSL  127 (167)
T ss_pred             EECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCc
Confidence            5444445566667788999999999999987532211  11222222   14789999999999965443333333321 


Q ss_pred             -----ccC--CCEEEEecCCC------cCHHHHHHHHH
Q 022351          101 -----QQN--CPSFGVNSHNK------DNVKEFLKFLQ  125 (298)
Q Consensus       101 -----~~~--~~vi~iSa~~~------~gi~~L~~~l~  125 (298)
                           +.+  +.++.+||++|      .|+++-++||.
T Consensus       128 ~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         128 EKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             ccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence                 112  35677999998      78999999885

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.35  E-value=1.5e-06  Score=73.39  Aligned_cols=105  Identities=16%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChh------hHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPT------QFKEW   95 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~------~~~~~   95 (298)
                      -|..+.+.+........+..+|++++|+|..++.+..+.  .+...+.  ..+.|+++|.||+|+.+..      .....
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~  132 (187)
T cd04132          53 LWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQA  132 (187)
T ss_pred             EEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHH
Confidence            455444455555555678999999999999865432221  1111111  2468999999999996532      11222


Q ss_pred             HHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           96 ITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        96 ~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.....+. +++.+||+++.|+++++..+...+..
T Consensus       133 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         133 ESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             HHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            222233455 78999999999999999988876654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=98.35  E-value=2.8e-06  Score=70.25  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-c--CCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRN-H--HPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      .||+ .+........+..+|++++|+|+..+.+... ..+.. +  ....+.|+++|.||+|+.....  .+...+..+.
T Consensus        59 ~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  137 (165)
T cd01864          59 TAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEK  137 (165)
T ss_pred             CCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            3454 5666666778899999999999987633211 11211 1  1124689999999999974421  1222222223


Q ss_pred             cCC-CEEEEecCCCcCHHHHHHHHHH
Q 022351          102 QNC-PSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       102 ~~~-~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      .+. .++.+||+++.|++++++.+.+
T Consensus       138 ~~~~~~~e~Sa~~~~~v~~~~~~l~~  163 (165)
T cd01864         138 NGMLAVLETSAKESQNVEEAFLLMAT  163 (165)
T ss_pred             cCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            333 5799999999999999988764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.35  E-value=2.5e-06  Score=68.85  Aligned_cols=105  Identities=18%  Similarity=0.158  Sum_probs=77.5

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      ..|..|+..++.-.+..+...+++|+|++||.+|..  ..-.++..++.   ..+.|.+++-||.|+...-.....++.+
T Consensus        68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rm  147 (186)
T KOG0075|consen   68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERM  147 (186)
T ss_pred             EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHh
Confidence            368888888888888889999999999999998632  12233444332   2579999999999997654444555544


Q ss_pred             H-----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 D-----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~-----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .     ....-++.+||+...+++.++++|.++-+
T Consensus       148 gL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  148 GLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             CccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            2     12235789999999999999999987654

>cd04126 Rab20 Rab20 subfamily

Probab=98.34  E-value=1.6e-06  Score=76.00  Aligned_cols=105  Identities=16%  Similarity=0.085  Sum_probs=67.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCCh------------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASP------------   89 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~------------   89 (298)
                      -|..++..+.......++..+|++|+|+|+..+.+..+.  .+..+.  ...+.|+|+|.||+||...            
T Consensus        48 iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~  127 (220)
T cd04126          48 IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGD  127 (220)
T ss_pred             EEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccc
Confidence            466555455555556679999999999999875432221  122121  1246899999999999651            


Q ss_pred             -------h--hHHHHHHHHHccC--------------CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           90 -------T--QFKEWITFFDQQN--------------CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        90 -------~--~~~~~~~~~~~~~--------------~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                             .  ..++...+.++.+              .+++.+||+++.|+++++..+.+.+.+
T Consensus       128 ~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         128 RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                   0  1122222222222              468999999999999999988776543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.34  E-value=1.1e-06  Score=72.20  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.||+|||||+|++.+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3799999999999999999983

Rab GTPases are implicated in vesicle trafficking.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.32  E-value=8.2e-07  Score=88.57  Aligned_cols=53  Identities=40%  Similarity=0.528  Sum_probs=41.6

Q ss_pred             cCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          149 GIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       149 G~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      |.||||||||+|+|.+            ....+++.||+|.+.....+. ++.++.++||||....
T Consensus         1 G~pNvGKSSL~N~Ltg------------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~   54 (591)
T TIGR00437         1 GNPNVGKSTLFNALTG------------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL   54 (591)
T ss_pred             CCCCCCHHHHHHHHhC------------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence            8999999999999982            235788999999987643332 3346899999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04113 Rab4 Rab4 subfamily

Probab=98.32  E-value=1.2e-06  Score=72.07  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ++++++|.+|||||||+|+|++.          .......+..|.......+.+... -.+.++||||..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~   60 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVEN----------KFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC----------CCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence            37899999999999999999831          111222222222222222333221 247899999963

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.32  E-value=9.5e-07  Score=78.47  Aligned_cols=65  Identities=26%  Similarity=0.376  Sum_probs=50.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~  215 (298)
                      .....+++.|.+|||||||||.+++..         ...-+.++.||-|+.++.+.+..  ..+++|.||+...+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k---------~~~~t~k~K~g~Tq~in~f~v~~--~~~~vDlPG~~~a~y  198 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVK---------NIADTSKSKNGKTQAINHFHVGK--SWYEVDLPGYGRAGY  198 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhh---------hhhhhcCCCCccceeeeeeeccc--eEEEEecCCcccccC
Confidence            456799999999999999999998532         22233445899999999888754  499999999665443

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.32  E-value=2.6e-06  Score=86.93  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH----cc-CCCEEEEecCCC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD----QQ-NCPSFGVNSHNK  114 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~----~~-~~~vi~iSa~~~  114 (298)
                      ...+..+|++++|+|+..+.+..+..+...+...++|+++|+||+||.+....+...+.+.    .. ..+++++||+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg  606 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG  606 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence            3458999999999999988766655544433346899999999999986543322222221    11 237799999999


Q ss_pred             cCHHHHHHHHHHHHHh
Q 022351          115 DNVKEFLKFLQAHVRN  130 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~  130 (298)
                      .|+++|++.+.+.+..
T Consensus       607 ~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        607 WHTNRLAPAMQEALES  622 (712)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999887765

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=2.4e-06  Score=82.10  Aligned_cols=99  Identities=15%  Similarity=0.122  Sum_probs=70.4

Q ss_pred             chhhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC---
Q 022351           28 YGPHMAAATRAIAD-RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN---  103 (298)
Q Consensus        28 fpghm~~~~~~i~~-~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~---  103 (298)
                      -|||.  ++-.|+. -.+-+|++++|+|+.+....+..+-.+.++..+.|+++++||+|..+.. .......+.+.|   
T Consensus        62 TPGHe--AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~  138 (509)
T COG0532          62 TPGHE--AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVP  138 (509)
T ss_pred             CCcHH--HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCH
Confidence            38994  3444444 3688999999999999887776655555556899999999999997432 122222222222   


Q ss_pred             ------CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          104 ------CPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       104 ------~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                            ..++++||++|+|+++|+..+.-...
T Consensus       139 E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         139 EEWGGDVIFVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             hhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence                  25789999999999999998765443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.32  E-value=9.9e-07  Score=82.92  Aligned_cols=76  Identities=13%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhh----hhcCCccceeecCCCC---eeeeeEE-----EEEccC----CCEE
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITA----AEKGKLRHATVSPQPG---ETKDIYS-----LKIASH----PNIY  203 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~----~~~~~~~~~~~~~~pg---~T~~~~~-----~~~~~~----~~~~  203 (298)
                      ...+.|+++|..|+|||||||++.+.-.++.    ..+.+.+.-.+++.+|   ||.++..     +.+...    .++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            4568999999999999999999986422111    1111122335788899   7877653     223222    3699


Q ss_pred             EEeCCCCCCCCC
Q 022351          204 VLDTPGILPPEI  215 (298)
Q Consensus       204 liDTPGi~~~~~  215 (298)
                      +|||+|+...+.
T Consensus        95 lIDcvG~~v~Ga  106 (492)
T TIGR02836        95 LVDCVGYTVKGA  106 (492)
T ss_pred             EEECCCcccCCC
Confidence            999999987543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01889 SelB_euk SelB subfamily

Probab=98.31  E-value=6.3e-07  Score=76.46  Aligned_cols=64  Identities=28%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc-------------cCCCEEEEeC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA-------------SHPNIYVLDT  207 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~-------------~~~~~~liDT  207 (298)
                      ++|+++|.+|+|||||+|+|++.....     .-........+|+|.+...  +.+.             ....+.++||
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~-----~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt   75 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTA-----AFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDC   75 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchh-----hhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEEC
Confidence            379999999999999999998521000     0011122334566666542  2222             1336899999


Q ss_pred             CCCC
Q 022351          208 PGIL  211 (298)
Q Consensus       208 PGi~  211 (298)
                      ||..
T Consensus        76 pG~~   79 (192)
T cd01889          76 PGHA   79 (192)
T ss_pred             CCcH
Confidence            9973

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.31  E-value=7e-06  Score=69.97  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhcC---CCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH---c--cCC
Q 022351           33 AAATRAIADRMP---LVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD---Q--QNC  104 (298)
Q Consensus        33 ~~~~~~i~~~l~---~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---~--~~~  104 (298)
                      ++..+.+.+++.   +...++.|+|+|.++...+.++.+++...+.|+++|+||+|.++..+....+....   .  ...
T Consensus        91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~  170 (200)
T COG0218          91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence            444455666654   35688999999999998888888887778999999999999998655443333222   1  122


Q ss_pred             C--EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          105 P--SFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 ~--vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .  ++.+|+.++.|++++...|.+.+.+
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2  7889999999999999999877653

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.31  E-value=1.8e-06  Score=74.88  Aligned_cols=91  Identities=19%  Similarity=0.246  Sum_probs=58.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhHH----HHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQFK----EWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~~----~~~~~~~  100 (298)
                      -||| .++...+...+..+|++++|+|+..+..........++...+ +++|+|+||+|+...  +...    +..+.+.
T Consensus        84 TpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~  162 (208)
T cd04166          84 TPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAA  162 (208)
T ss_pred             CCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHH
Confidence            4676 556666777899999999999998876544433322222234 456778999999742  2111    2222223


Q ss_pred             ccC---CCEEEEecCCCcCHHH
Q 022351          101 QQN---CPSFGVNSHNKDNVKE  119 (298)
Q Consensus       101 ~~~---~~vi~iSa~~~~gi~~  119 (298)
                      ..+   .+++++||+++.|+.+
T Consensus       163 ~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         163 KLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HcCCCCceEEEEeCCCCCCCcc
Confidence            334   3589999999999874

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.31  E-value=3.2e-06  Score=80.52  Aligned_cols=88  Identities=14%  Similarity=0.020  Sum_probs=60.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChhhHH-----HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPTQFK-----EWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~~~~-----~~~~~~~  100 (298)
                      .-||| .++...+...+..+|.+++|+|++.+......+...++...+.|.+ +++||+|+.+.+...     +..+.++
T Consensus        81 DtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        81 DCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             ECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            44888 5677888888899999999999998655554444443333567765 689999998643221     2223333


Q ss_pred             ccC-----CCEEEEecCCCc
Q 022351          101 QQN-----CPSFGVNSHNKD  115 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~~  115 (298)
                      ..+     ++++++||.++.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             hcCCCccCccEEECcccccc
Confidence            222     578999998764

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04140 ARHI_like ARHI subfamily

Probab=98.30  E-value=1.4e-06  Score=72.26  Aligned_cols=100  Identities=15%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCC--CCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHP--FSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~--~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      |..+...+........+..+|.+++|+|...+.+..+ ..    +.....  ..+.|+++|.||+|+.+...+  +....
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  133 (165)
T cd04140          54 TDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA  133 (165)
T ss_pred             EECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH
Confidence            4433334444444466789999999999986543221 11    211111  146899999999999652221  12122


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      +....+.+++.+||+++.|+++++++|.+
T Consensus       134 ~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         134 CATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             HHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            22234567899999999999999998864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.30  E-value=5.6e-06  Score=69.29  Aligned_cols=98  Identities=9%  Similarity=0.038  Sum_probs=75.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCChhhHHHHHHHHHc--cCC
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASPTQFKEWITFFDQ--QNC  104 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~~~~~~~~~~~~~--~~~  104 (298)
                      +||| .++.-.+.-..+.++-.++++|++.|.......+.+++.... .|++|..||.||.+..-.++..+++..  ...
T Consensus        75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~  153 (187)
T COG2229          75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV  153 (187)
T ss_pred             CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence            4899 778888888899999999999999988765555655544444 899999999999765545555566643  367


Q ss_pred             CEEEEecCCCcCHHHHHHHHHH
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      +++.+++..+++..+.+..+..
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLLL  175 (187)
T ss_pred             ceeeeecccchhHHHHHHHHHh
Confidence            8999999999998887776653

>cd04155 Arl3 Arl3 subfamily

Probab=98.30  E-value=2.9e-06  Score=70.61  Aligned_cols=100  Identities=14%  Similarity=0.089  Sum_probs=64.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++..+....+...+..+|.+++|+|+..+....  ...+...+   ...+.|+++++||+|+......+...+.+.
T Consensus        62 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~  141 (173)
T cd04155          62 VWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN  141 (173)
T ss_pred             EEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC
Confidence            3444444455555667789999999999997642111  11222221   124689999999999976544444444432


Q ss_pred             cc-----CCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 QQ-----NCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ~~-----~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      -.     .++++.+||++++|+++++++|.
T Consensus       142 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         142 LHDLRDRTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             CcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence            11     12467899999999999999885

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.30  E-value=1.7e-06  Score=71.77  Aligned_cols=60  Identities=20%  Similarity=0.259  Sum_probs=36.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      .++|+++|.+|||||||+|++...          .-.....+..|++.....+.+.+. -.+.++||||..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~----------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~   63 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSED----------SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE   63 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC----------cCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence            368999999999999999999831          111111222233333333333321 147899999953

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PLN03110 Rab GTPase; Provisional

Probab=98.30  E-value=5.8e-06  Score=72.10  Aligned_cols=106  Identities=11%  Similarity=0.003  Sum_probs=70.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChhhH-HHHHHHH-
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPTQF-KEWITFF-   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~-   99 (298)
                      -|...+..+........+..+|.+++|+|...+.+..+ ..+...+   ...+.|+++|.||+|+.....+ .+....+ 
T Consensus        65 l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~  144 (216)
T PLN03110         65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA  144 (216)
T ss_pred             EEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH
Confidence            45544446666666778999999999999986533221 1111111   1246899999999998643211 1112222 


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      ...+++++.+||+++.|++++++.+...+.+.
T Consensus       145 ~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        145 EKEGLSFLETSALEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            23467899999999999999999998777653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.30  E-value=2e-06  Score=85.80  Aligned_cols=102  Identities=20%  Similarity=0.163  Sum_probs=74.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh---hhHHHHHHHHH----
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP---TQFKEWITFFD----  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~---~~~~~~~~~~~----  100 (298)
                      -||| ..+...+...+..+|.+++|+|+..+.......+...+...+.|+++++||+|+...   +...+..+.+.    
T Consensus        71 TPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~  149 (594)
T TIGR01394        71 TPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA  149 (594)
T ss_pred             CCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc
Confidence            4788 667788889999999999999998765554444444433467899999999998642   22334444442    


Q ss_pred             ---ccCCCEEEEecCCCc----------CHHHHHHHHHHHHHh
Q 022351          101 ---QQNCPSFGVNSHNKD----------NVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ---~~~~~vi~iSa~~~~----------gi~~L~~~l~~~i~~  130 (298)
                         +..++++++||+++.          |+..|++.+.+.++.
T Consensus       150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence               224578999999985          799999988887764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=98.29  E-value=1.7e-06  Score=71.68  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|+|..
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~   22 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVN   22 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3799999999999999999983

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.29  E-value=3.2e-06  Score=80.80  Aligned_cols=91  Identities=22%  Similarity=0.225  Sum_probs=61.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCCh--hhHHHHHH----HHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASP--TQFKEWIT----FFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~--~~~~~~~~----~~~  100 (298)
                      -||| .++.+.+...+..+|++++|+|+..+......+...++.. ..+++++++||+|+.+.  +.++...+    +++
T Consensus        87 tPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~  165 (406)
T TIGR02034        87 TPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAE  165 (406)
T ss_pred             CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHH
Confidence            3888 5677788888999999999999998776655433222212 23467889999999752  22222222    222


Q ss_pred             ccC---CCEEEEecCCCcCHHH
Q 022351          101 QQN---CPSFGVNSHNKDNVKE  119 (298)
Q Consensus       101 ~~~---~~vi~iSa~~~~gi~~  119 (298)
                      ..+   .+++++||.++.|+++
T Consensus       166 ~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       166 QLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HcCCCCccEEEeecccCCCCcc
Confidence            223   3689999999998875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.29  E-value=2.3e-06  Score=85.16  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=67.2

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC--hhhHHHHHHHHH----c
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS--PTQFKEWITFFD----Q  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~--~~~~~~~~~~~~----~  101 (298)
                      .||| ..+.......+..+|++++|+|+.++......+....+...+.|+++++||+|+..  .+.+...+..+.    .
T Consensus       142 TPGh-e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~  220 (587)
T TIGR00487       142 TPGH-EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPED  220 (587)
T ss_pred             CCCC-cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHh
Confidence            3787 45555556678999999999999876554443333333346799999999999954  223333222211    1


Q ss_pred             c--CCCEEEEecCCCcCHHHHHHHHHH
Q 022351          102 Q--NCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       102 ~--~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      .  ..+++++||+++.|+++|++.+..
T Consensus       221 ~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       221 WGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             cCCCceEEEEECCCCCChHHHHHhhhh
Confidence            1  136899999999999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00876 Ras Ras family

Probab=98.29  E-value=4.1e-06  Score=68.24  Aligned_cols=98  Identities=18%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~  100 (298)
                      +||+ ..........+..+|++++|+|...+.+..+     ..+.........|+++|+||+|+....  ..+.......
T Consensus        54 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  132 (160)
T cd00876          54 TAGQ-EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK  132 (160)
T ss_pred             CCCh-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence            4555 4444555677889999999999876532111     112222112479999999999997632  1223333333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      ..+.+++.+|++++.|++++++.|.+
T Consensus       133 ~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876         133 EWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             HcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            44578999999999999999998864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK12735 elongation factor Tu; Reviewed

Probab=98.29  E-value=4.2e-06  Score=79.73  Aligned_cols=103  Identities=13%  Similarity=0.045  Sum_probs=70.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChhhHH-----HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPTQFK-----EWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~~~~-----~~~~~~   99 (298)
                      -.-||| .++...+...+..+|++++|+|+..+......++..++...+.|.+ +++||+|+.+.+...     +...++
T Consensus        80 iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l  158 (396)
T PRK12735         80 VDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             EECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence            355888 5788888899999999999999987655544444333334577866 579999998543221     222233


Q ss_pred             Hcc-----CCCEEEEecCCCc----------CHHHHHHHHHHHHH
Q 022351          100 DQQ-----NCPSFGVNSHNKD----------NVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~-----~~~vi~iSa~~~~----------gi~~L~~~l~~~i~  129 (298)
                      ...     .++++++||.++.          ++..|++.|.+.++
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            222     2578999999873          67888888877654

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.29  E-value=2.4e-07  Score=81.43  Aligned_cols=114  Identities=17%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEEEccCCCEEEEeCCCCCCCCCCChhhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLKIASHPNIYVLDTPGILPPEIHDVEVC  221 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~~~~~~~~~liDTPGi~~~~~~~~~~~  221 (298)
                      .++.++|+|.|||||+++-|.            +..+.+..+-|+|.... .+.-..+.++.|.|.|||.+.......++
T Consensus        60 a~vg~vgFPSvGksTl~~~l~------------g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg  127 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLT------------GTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG  127 (358)
T ss_pred             eeeeEEecCccchhhhhhhhc------------CCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc
Confidence            389999999999999999998            34556677777774433 44335677899999999998655443333


Q ss_pred             hhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCcccccccccCCC
Q 022351          222 SKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPLTLHHKADQS  278 (298)
Q Consensus       222 ~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (298)
                      .          .++...+-+.+++.+|+...+..+-..+..+-.++.-.|.+.+++.
T Consensus       128 ~----------qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i  174 (358)
T KOG1487|consen  128 K----------QVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNI  174 (358)
T ss_pred             c----------EEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCc
Confidence            2          1334455566666777777777777777777778888888877775

>cd04125 RabA_like RabA-like subfamily

Probab=98.28  E-value=6.6e-06  Score=69.76  Aligned_cols=103  Identities=19%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhhH--HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQF--KEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~   99 (298)
                      |..+...+........+..+|.+++|+|+..+.+..+  .   .+..+ .....|+++|.||+|+.+...+  .....+.
T Consensus        54 ~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~  132 (188)
T cd04125          54 WDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFC  132 (188)
T ss_pred             EECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHH
Confidence            5544445555566778999999999999986532111  1   11111 1235789999999999743211  1112222


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+.+++.+||+++.|+++++..+...+..
T Consensus       133 ~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         133 DSLNIPFFETSAKQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2346689999999999999999988776644

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.28  E-value=1.8e-06  Score=70.88  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++++++|.+|||||||+|++++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~   24 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQ   24 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh
Confidence            36899999999999999999983

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.28  E-value=7e-06  Score=68.38  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             ccchhhHHHHHH-HHHHhcCCCCeEEEEEeCCCCCCcccH-H----HhccCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           26 GWYGPHMAAATR-AIADRMPLVDIILEVRDARIPFSSEFD-Q----LRNHHPFSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        26 ~wfpghm~~~~~-~i~~~l~~aDlVl~VvDa~~p~~~~~~-~----l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      -|..+++.+... .+...+.++|.+++|+|+..+.+..+. .    +.......+.|+++|.||+|+.....+  +...+
T Consensus        55 i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  134 (170)
T cd04115          55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQR  134 (170)
T ss_pred             EEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHH
Confidence            455444454443 455678999999999999865432221 1    122222246899999999998643221  12222


Q ss_pred             HHHccCCCEEEEecCC---CcCHHHHHHHHHHH
Q 022351           98 FFDQQNCPSFGVNSHN---KDNVKEFLKFLQAH  127 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~---~~gi~~L~~~l~~~  127 (298)
                      +.+....+++.+||++   +.++++++..+.+.
T Consensus       135 ~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~  167 (170)
T cd04115         135 FADAHSMPLFETSAKDPSENDHVEAIFMTLAHK  167 (170)
T ss_pred             HHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence            2233456889999998   77788877776544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.28  E-value=2.1e-06  Score=71.00  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.+|||||||+|++.
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~   23 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFA   23 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999998

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK00049 elongation factor Tu; Reviewed

Probab=98.27  E-value=5.1e-06  Score=79.14  Aligned_cols=103  Identities=13%  Similarity=0.055  Sum_probs=71.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChhh-HH----HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPTQ-FK----EWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~~-~~----~~~~~~   99 (298)
                      ..-||| .++...+...+..+|++++|+|+..+.......+..++...+.|.+ +++||+|+.+.+. .+    +..+.+
T Consensus        80 iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l  158 (396)
T PRK00049         80 VDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             EECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence            345898 5788888888999999999999998766665555555444678876 5899999985432 21    222333


Q ss_pred             Hcc-----CCCEEEEecCCCc----------CHHHHHHHHHHHHH
Q 022351          100 DQQ-----NCPSFGVNSHNKD----------NVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~-----~~~vi~iSa~~~~----------gi~~L~~~l~~~i~  129 (298)
                      ...     ..+++++||.++.          ++..|++.|.+.++
T Consensus       159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            332     2478999998764          56778887776543

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=1.6e-06  Score=80.29  Aligned_cols=69  Identities=30%  Similarity=0.332  Sum_probs=41.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE--EEccC-C--CEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL--KIASH-P--NIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~--~~~~~-~--~~~liDTPGi~~~  213 (298)
                      +-.+++|++|.+|.|||||||+|+.+.....     ......+..|-.|..+...  .+..+ -  ++.|+||||+.+.
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-----~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~   92 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGN-----REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA   92 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCC-----cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence            4568999999999999999999996422211     1111122222223333322  12211 1  4889999999873

>cd01865 Rab3 Rab3 subfamily

Probab=98.27  E-value=2.2e-06  Score=71.01  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.+|||||||+|++.
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~   22 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYA   22 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999998

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.26  E-value=3.8e-06  Score=85.21  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=69.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH----Hc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF----DQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~----~~  101 (298)
                      .||| ..+...+...+..+|++|+|+|+.++......+....+...+.|+|+++||+|+....  .+...+..+    ..
T Consensus       302 TPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~  380 (742)
T CHL00189        302 TPGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEK  380 (742)
T ss_pred             CCcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHh
Confidence            3677 5676767778999999999999987654443333333334679999999999996532  222222211    11


Q ss_pred             cC--CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          102 QN--CPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       102 ~~--~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+  .+++++||+++.|+++|++.+..+.
T Consensus       381 ~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        381 WGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            22  4789999999999999999887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.26  E-value=2.6e-06  Score=74.51  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=57.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CcccHHHhccCCC-CCCcEEEEEecCCCCC----hhhHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-------SSEFDQLRNHHPF-SSSRRILVLNKMDLAS----PTQFKE   94 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-------~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~----~~~~~~   94 (298)
                      ..||| ......+...+..+|++++|+|+..+.       .........+... ..+|+++++||+|+..    ......
T Consensus        83 DtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~  161 (219)
T cd01883          83 DAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDE  161 (219)
T ss_pred             ECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHH
Confidence            34777 456777778889999999999998742       1111111111112 2368889999999973    222222


Q ss_pred             HHH----HHHccC-----CCEEEEecCCCcCHH
Q 022351           95 WIT----FFDQQN-----CPSFGVNSHNKDNVK  118 (298)
Q Consensus        95 ~~~----~~~~~~-----~~vi~iSa~~~~gi~  118 (298)
                      ..+    .+...+     .+++++||++|.|++
T Consensus       162 i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         162 IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            222    233332     469999999999976

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.26  E-value=1.2e-06  Score=84.16  Aligned_cols=72  Identities=29%  Similarity=0.369  Sum_probs=46.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--cceee------cCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--RHATV------SPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--~~~~~------~~~pg~T~~~~~~~~~-~~  199 (298)
                      .+.++++++|.+|+|||||+|+|+.. +.+...          ..|+.  +.+.+      -..+|+|+++....+. .+
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            46689999999999999999999842 222111          00110  00111      1268999998865543 34


Q ss_pred             CCEEEEeCCCCC
Q 022351          200 PNIYVLDTPGIL  211 (298)
Q Consensus       200 ~~~~liDTPGi~  211 (298)
                      ..+.++||||..
T Consensus        84 ~~i~liDtpG~~   95 (425)
T PRK12317         84 YYFTIVDCPGHR   95 (425)
T ss_pred             eEEEEEECCCcc
Confidence            468999999964

>cd04154 Arl2 Arl2 subfamily

Probab=98.25  E-value=2e-06  Score=71.93  Aligned_cols=58  Identities=22%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ....+++++|.+|||||||+|+|.+           .......+..|...  ..+.+. ...+.++||||..
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~-----------~~~~~~~~t~g~~~--~~~~~~-~~~l~l~D~~G~~   69 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLG-----------EDIDTISPTLGFQI--KTLEYE-GYKLNIWDVGGQK   69 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHcc-----------CCCCCcCCccccce--EEEEEC-CEEEEEEECCCCH
Confidence            4557999999999999999999983           12222333333221  122222 3357899999964

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.25  E-value=3.9e-06  Score=70.75  Aligned_cols=75  Identities=13%  Similarity=0.075  Sum_probs=54.0

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHHHccC--CCEEEEecCCCcCH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFFDQQN--CPSFGVNSHNKDNV  117 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~~~~--~~vi~iSa~~~~gi  117 (298)
                      ..+|.+++|+|++.++...+..+..++...++|+++|+||+|+.+....    +++.+.+...+  .+++++||++++|+
T Consensus        99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598        99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence            4568999999999877766655544444467999999999999865432    33334443333  47999999999986


Q ss_pred             H
Q 022351          118 K  118 (298)
Q Consensus       118 ~  118 (298)
                      +
T Consensus       179 ~  179 (179)
T TIGR03598       179 D  179 (179)
T ss_pred             C
Confidence            3

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=9e-06  Score=76.53  Aligned_cols=114  Identities=14%  Similarity=0.055  Sum_probs=84.4

Q ss_pred             hcceecccCC----CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCCh
Q 022351           15 IGTAVSQKKG----GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASP   89 (298)
Q Consensus        15 ~g~~~~~~~~----~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~   89 (298)
                      +|+..+.++.    ...-||| .+.+..+...+.-.|..++|||+.+++..+.-+....+.. ..+..++|+||+|.+++
T Consensus        40 lg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~  118 (447)
T COG3276          40 LGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE  118 (447)
T ss_pred             eeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH
Confidence            4677777664    3566899 7899999999999999999999987776655432222222 34555999999999987


Q ss_pred             hhHHHHHHHHH----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           90 TQFKEWITFFD----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        90 ~~~~~~~~~~~----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +.++...+.+.    -...+++.+|+.+++|+++|.+.|.+...
T Consensus       119 ~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         119 ARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            65554444332    12346799999999999999999998873

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.25  E-value=1.3e-06  Score=73.25  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|+|||||+|+|.+
T Consensus         1 ~v~v~G~~~~GKStlln~l~~   21 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLY   21 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHH
Confidence            479999999999999999985

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.24  E-value=6e-06  Score=82.15  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh--------------
Q 022351           27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ--------------   91 (298)
Q Consensus        27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~--------------   91 (298)
                      |. ||| ..+.......+..+|++++|+|++.+......+...++...+.|+++++||+|+.+...              
T Consensus        74 iDTpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~  152 (590)
T TIGR00491        74 IDTPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ  152 (590)
T ss_pred             EECCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence            54 555 56666666678999999999999876554444433333346889999999999974210              


Q ss_pred             ---H-HHH-------HHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           92 ---F-KEW-------ITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        92 ---~-~~~-------~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                         + ..+       ...+.+.               ..+++++||++|+|+++|+.++.....
T Consensus       153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence               0 000       0011111               247899999999999999998865443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.24  E-value=6.3e-06  Score=65.23  Aligned_cols=96  Identities=21%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-----HhccCCCCCCcEEEEEecCCCCChhhHHHH---HHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-----LRNHHPFSSSRRILVLNKMDLASPTQFKEW---ITFFD  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-----l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~---~~~~~  100 (298)
                      ||+ ..........+..+|.+++|+|+..+.......     ........++|+++|+||+|+.+.......   .....
T Consensus        53 ~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~  131 (157)
T cd00882          53 AGQ-ERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK  131 (157)
T ss_pred             CCh-HHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh
Confidence            443 444445567889999999999998764433221     111222468999999999999865543332   12222


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      ....+++.+|+..+.|+++++++|.
T Consensus       132 ~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         132 ELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             hcCCcEEEEecCCCCChHHHHHHHh
Confidence            3456899999999999999998874

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.24  E-value=2.5e-06  Score=71.78  Aligned_cols=101  Identities=15%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhh-H--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQ-F--------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~-~--------   92 (298)
                      -|..++..+........+..+|++|+|+|..++.+..+.  .+...+  ...+.|+++|.||+||.+... .        
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  132 (174)
T cd01871          53 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL  132 (174)
T ss_pred             EEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccC
Confidence            477655555555555678999999999999876433221  121111  124689999999999954211 1        


Q ss_pred             -----HHHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHH
Q 022351           93 -----KEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        93 -----~~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                           ++..+..++.+ .+++.+||+++.|++++++.+.+
T Consensus       133 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         133 TPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence                 11112222334 37899999999999999888753

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.24  E-value=6.5e-06  Score=72.75  Aligned_cols=105  Identities=11%  Similarity=0.089  Sum_probs=70.0

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh-----------
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP-----------   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~-----------   89 (298)
                      .-|..+...+.......++..+|++|+|+|...+.+..+  ..+...+.  ..+.|+++|.||+||...           
T Consensus        64 ~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~  143 (232)
T cd04174          64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQK  143 (232)
T ss_pred             EEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhcccc
Confidence            367776666665555668999999999999987644332  11211111  246899999999998531           


Q ss_pred             ---hhHHHHHHHHHccCC-CEEEEecCCCc-CHHHHHHHHHHHHH
Q 022351           90 ---TQFKEWITFFDQQNC-PSFGVNSHNKD-NVKEFLKFLQAHVR  129 (298)
Q Consensus        90 ---~~~~~~~~~~~~~~~-~vi~iSa~~~~-gi~~L~~~l~~~i~  129 (298)
                         -..++..++.++.+. .++.+||+++. ++++++..+...+.
T Consensus       144 ~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~  188 (232)
T cd04174         144 QAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL  188 (232)
T ss_pred             CCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence               112233334445566 58899999997 79999988776543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.23  E-value=2.6e-06  Score=78.47  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=23.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++||++|.+|.||||+||+|++.
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~   46 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGT   46 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHh
Confidence            56789999999999999999999965

>cd01875 RhoG RhoG subfamily

Probab=98.23  E-value=3.6e-06  Score=71.87  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh-H--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ-F--------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~-~--------   92 (298)
                      -|..+...+.......++..+|++|+|+|..++.+-.+.  .+...+.  ..+.|+++|.||+||.+... .        
T Consensus        55 i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~  134 (191)
T cd01875          55 LWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQ  134 (191)
T ss_pred             EEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccC
Confidence            477666566665555678999999999999876432221  1211111  24789999999999964321 0        


Q ss_pred             -----HHHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           93 -----KEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        93 -----~~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                           ++..++.++.+ .+++.+||+++.|+++++..+.+.+.
T Consensus       135 ~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         135 APITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence                 11111222334 47899999999999999999886553

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG2262 HflX GTPases [General function prediction only]

Probab=98.23  E-value=4.4e-06  Score=78.06  Aligned_cols=61  Identities=30%  Similarity=0.345  Sum_probs=45.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      ..-..|+++|++|+|||||+|+|.+            ...-+.+..+.|.+...  +.+.++.++.+-||-||..
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~------------~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~  252 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTG------------ADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR  252 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhc------------cCeeccccccccccCceeEEEeCCCceEEEecCccCcc
Confidence            4457999999999999999999983            23344455556665553  4455566799999999986

>PLN03127 Elongation factor Tu; Provisional

Probab=98.23  E-value=5.3e-06  Score=80.16  Aligned_cols=103  Identities=12%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcE-EEEEecCCCCChhhHHH-----HHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-ILVLNKMDLASPTQFKE-----WITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~-IiVlNK~DL~~~~~~~~-----~~~~~   99 (298)
                      ..-||| .+.+..+...+..+|++++|+|+..+......++..++...+.|. |+++||+|+.+.+...+     +.+.+
T Consensus       129 iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l  207 (447)
T PLN03127        129 VDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELL  207 (447)
T ss_pred             EECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            345898 467777777888899999999999877666655555544567884 78899999986433222     11222


Q ss_pred             Hcc-----CCCEEEEecC---CCcC-------HHHHHHHHHHHHH
Q 022351          100 DQQ-----NCPSFGVNSH---NKDN-------VKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~-----~~~vi~iSa~---~~~g-------i~~L~~~l~~~i~  129 (298)
                      ...     ..+++++|+.   ++.+       +..|++.+.+.++
T Consensus       208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            211     2467787775   3433       6778888877654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.22  E-value=1.8e-06  Score=72.22  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=64.1

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChhh-----------
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPTQ-----------   91 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~~-----------   91 (298)
                      |..+.+.+........+..+|.+++|+|..++.+...  ..+...+.  ..+.|+++|.||+|+.+...           
T Consensus        53 ~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  132 (173)
T cd04130          53 CDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEK  132 (173)
T ss_pred             EECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCC
Confidence            6655545554444457899999999999987643322  11221111  24689999999999964321           


Q ss_pred             ---HHHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHH
Q 022351           92 ---FKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus        92 ---~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~  125 (298)
                         .++...+.+..+. +++.+||+++.|++++++.+.
T Consensus       133 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         133 PVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             CcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence               1122222333455 789999999999999987763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.22  E-value=2.5e-06  Score=69.91  Aligned_cols=55  Identities=31%  Similarity=0.405  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      +|+++|.+|||||||+|++..           +......+..|.+.  ..+.......+.++||||..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~-----------~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~   55 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKH-----------AELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE   55 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc-----------CCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence            478999999999999999983           22222333333332  22223233358899999964

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.22  E-value=9e-06  Score=72.52  Aligned_cols=103  Identities=17%  Similarity=0.093  Sum_probs=64.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhcc--C------CCCCCcEEEEEecCCCCChh--
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNH--H------PFSSSRRILVLNKMDLASPT--   90 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~--l------~~~~k~~IiVlNK~DL~~~~--   90 (298)
                      -|..+............+..+|++|+|+|...+.+..+     ..+...  .      ...+.|+++|.||+|+....  
T Consensus        52 I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v  131 (247)
T cd04143          52 ILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV  131 (247)
T ss_pred             EEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc
Confidence            35554434333322345789999999999986532111     112111  0      11468999999999996421  


Q ss_pred             hHHHHHHHHH-ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           91 QFKEWITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        91 ~~~~~~~~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ..++..+.+. ..+..++.+||+++.|++++++.|....
T Consensus       132 ~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         132 QRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             CHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            2233333332 2245789999999999999999998755

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.21  E-value=2.6e-06  Score=69.54  Aligned_cols=22  Identities=41%  Similarity=0.529  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|++..
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999983

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.21  E-value=3e-06  Score=72.86  Aligned_cols=66  Identities=21%  Similarity=0.294  Sum_probs=42.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~  211 (298)
                      .++++++|.+|+|||||+++|+....    ..|+.+.        ...-...|+|.+.....+. .+.++.++||||..
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~----~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLA----KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHH----hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence            36899999999999999999985311    0011110        0111256788777654442 34468999999974

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.21  E-value=3.1e-06  Score=70.00  Aligned_cols=102  Identities=22%  Similarity=0.133  Sum_probs=63.8

Q ss_pred             cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC-CCCCcEEEEEecCCCCChhh--HHHHHH
Q 022351           27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP-FSSSRRILVLNKMDLASPTQ--FKEWIT   97 (298)
Q Consensus        27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~   97 (298)
                      |. ||+...........+..+|++++|+|+..+.+...     ..+..... ..+.|+++|.||+|+.....  .+....
T Consensus        52 ~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  131 (165)
T cd04146          52 LDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK  131 (165)
T ss_pred             EECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH
Confidence            44 55532223334567889999999999986533221     11222111 24789999999999854321  122222


Q ss_pred             HHHccCCCEEEEecCCC-cCHHHHHHHHHHHH
Q 022351           98 FFDQQNCPSFGVNSHNK-DNVKEFLKFLQAHV  128 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~-~gi~~L~~~l~~~i  128 (298)
                      ..+..+.+++.+||+++ .|+++++..+.+.+
T Consensus       132 ~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         132 LASELGCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             HHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            23344568899999999 59999998887543

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>CHL00071 tufA elongation factor Tu

Probab=98.21  E-value=3.2e-06  Score=80.90  Aligned_cols=71  Identities=20%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCC----ccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGK----LRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI  210 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~----~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi  210 (298)
                      .++.++++++|.+|+|||||+|+|++. +..... ...    .........+|+|.+.....+. .+.++.++||||.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~-~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh   85 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA-KAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH   85 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc-cccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence            466789999999999999999999853 111100 000    0111222347889887654443 3446889999995

>cd04118 Rab24 Rab24 subfamily

Probab=98.20  E-value=2.9e-06  Score=72.17  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|+++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~   21 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYV   21 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999998

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04116 Rab9 Rab9 subfamily

Probab=98.20  E-value=3.6e-06  Score=69.84  Aligned_cols=23  Identities=43%  Similarity=0.551  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..++|+++|.+|||||||+|++.
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~   26 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYV   26 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999998

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04157 Arl6 Arl6 subfamily

Probab=98.20  E-value=2.4e-06  Score=70.04  Aligned_cols=57  Identities=19%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||+|+|...         ........+..|.+..  .+. .....+.++||||...
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~---------~~~~~~~~~t~g~~~~--~~~-~~~~~~~l~Dt~G~~~   57 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPE---------NAQSQIIVPTVGFNVE--SFE-KGNLSFTAFDMSGQGK   57 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHccc---------CCCcceecCccccceE--EEE-ECCEEEEEEECCCCHh
Confidence            4789999999999999999831         1112234444554332  121 1223578999999643

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.20  E-value=2.5e-06  Score=69.03  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      |+++|.+|||||||+|+|.+.          ..  .....|.+..+...+.. ....+.++||||..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~----------~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~   55 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG----------QF--SEDTIPTVGFNMRKVTK-GNVTLKVWDLGGQP   55 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC----------CC--CcCccCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence            789999999999999999831          11  11122322222222222 12347899999963

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.20  E-value=1.3e-05  Score=65.44  Aligned_cols=86  Identities=10%  Similarity=0.052  Sum_probs=60.7

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH----HH--ccCCCEEEEecCCCc
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF----FD--QQNCPSFGVNSHNKD  115 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~----~~--~~~~~vi~iSa~~~~  115 (298)
                      .-+.++.+++|+|...+.......+..++...+.|+++|+||+|+............    ++  ....+++++|++++.
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ  157 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence            345678999999998765555444555544457899999999999765443322222    21  223478999999999


Q ss_pred             CHHHHHHHHHHH
Q 022351          116 NVKEFLKFLQAH  127 (298)
Q Consensus       116 gi~~L~~~l~~~  127 (298)
                      ++.+++++|.++
T Consensus       158 ~~~~l~~~l~~~  169 (170)
T cd01876         158 GIDELRALIEKW  169 (170)
T ss_pred             CHHHHHHHHHHh
Confidence            999999988754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04116 Rab9 Rab9 subfamily

Probab=98.20  E-value=8.6e-06  Score=67.58  Aligned_cols=100  Identities=13%  Similarity=0.021  Sum_probs=65.4

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChh-hHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPT-QFKEWIT   97 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~-~~~~~~~   97 (298)
                      |..+++.+........+..+|.+++|+|...+.+...     ..+.....   ..+.|+++|.||+|+.... ..++..+
T Consensus        59 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  138 (170)
T cd04116          59 WDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA  138 (170)
T ss_pred             EeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH
Confidence            5544446666666678999999999999876532211     11222211   1357999999999996432 1223333


Q ss_pred             HHHccC-CCEEEEecCCCcCHHHHHHHHHH
Q 022351           98 FFDQQN-CPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        98 ~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      +.+..+ .+++.+||+++.|+.++++.+.+
T Consensus       139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         139 WCRENGDYPYFETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence            333444 37899999999999999888754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.19  E-value=2.8e-06  Score=70.76  Aligned_cols=103  Identities=16%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh-H--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ-F--------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~-~--------   92 (298)
                      -|..+.+.+........+..+|++|+|+|...+.+..+.  .+...+.  ..+.|+++|.||+|+.+... .        
T Consensus        50 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  129 (174)
T smart00174       50 LWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQ  129 (174)
T ss_pred             EEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence            455444344444444568899999999999865332211  1111111  24799999999999965321 1        


Q ss_pred             -----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351           93 -----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        93 -----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                           ++..+..+..+. .++.+||+++.|++++++.+.+.+
T Consensus       130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                 111122223444 789999999999999999887543

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04117 Rab15 Rab15 subfamily

Probab=98.19  E-value=9.2e-06  Score=67.14  Aligned_cols=100  Identities=16%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|....+.+........+..+|.+++|+|...+.+... ..    +... ...+.|+++|.||+||.....  .++....
T Consensus        53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~  131 (161)
T cd04117          53 IWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL  131 (161)
T ss_pred             EEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            57766656666666778999999999999876532111 11    1111 123689999999999964321  1222222


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      .+..+.+++.+||+++.|+++++..|.+
T Consensus       132 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         132 AKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            2234567899999999999999988864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.19  E-value=3.8e-06  Score=85.85  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHHH----Hcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITFF----DQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~~----~~~  102 (298)
                      ||| ..+...+...+..+|++|+|+|+.++......+...+....+.|+|+++||+|+...  +.+...+..+    ...
T Consensus       345 PGh-e~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~  423 (787)
T PRK05306        345 PGH-EAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEW  423 (787)
T ss_pred             CCC-ccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHh
Confidence            777 456666667789999999999998865544433333333468999999999999642  2222222111    111


Q ss_pred             --CCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          103 --NCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       103 --~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                        .++++++||+++.|+++|++.|...
T Consensus       424 g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        424 GGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCceEEEEeCCCCCCchHHHHhhhhh
Confidence              2579999999999999999988653

>cd04142 RRP22 RRP22 subfamily

Probab=98.19  E-value=1.4e-05  Score=68.78  Aligned_cols=90  Identities=12%  Similarity=0.028  Sum_probs=58.7

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccC--CCCCCcEEEEEecCCCCChhhH--HHHHHHHH-ccCCCEEE
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHH--PFSSSRRILVLNKMDLASPTQF--KEWITFFD-QQNCPSFG  108 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l--~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~-~~~~~vi~  108 (298)
                      ....+..+|++|+|+|+..+.+... ..    +.+..  ...+.|+++|.||+|+......  +...+... ..+.+++.
T Consensus        74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e  153 (198)
T cd04142          74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE  153 (198)
T ss_pred             HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence            3456889999999999987533221 11    11111  1246899999999999643211  11111122 23568899


Q ss_pred             EecCCCcCHHHHHHHHHHHH
Q 022351          109 VNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +||++|.|++++++.+...+
T Consensus       154 ~Sak~g~~v~~lf~~i~~~~  173 (198)
T cd04142         154 CSAKYNWHILLLFKELLISA  173 (198)
T ss_pred             ecCCCCCCHHHHHHHHHHHh
Confidence            99999999999988876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04124 RabL2 RabL2 subfamily

Probab=98.19  E-value=3.5e-06  Score=69.60  Aligned_cols=22  Identities=41%  Similarity=0.590  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||++.+..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999983

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.19  E-value=4e-06  Score=79.24  Aligned_cols=120  Identities=20%  Similarity=0.193  Sum_probs=90.4

Q ss_pred             HHHhhhcceecccCC-C---------ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEE
Q 022351           10 KLAREIGTAVSQKKG-G---------GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRIL   79 (298)
Q Consensus        10 ~~~~~~g~~~~~~~~-~---------~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~Ii   79 (298)
                      .|+||.|.+-+.+-. +         ..-||| +.+--.+.+.+..+|-|++|+||..++..+-.+..+-....+.+.|+
T Consensus        47 DlEkERGITILaKnTav~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIV  125 (603)
T COG1217          47 DLEKERGITILAKNTAVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV  125 (603)
T ss_pred             chhhhcCcEEEeccceeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEE
Confidence            478899998888775 2         344899 67888889999999999999999998777776654332236788999


Q ss_pred             EEecCCCCC---hhhHHHHHHHHH-------ccCCCEEEEecCCC----------cCHHHHHHHHHHHHHh
Q 022351           80 VLNKMDLAS---PTQFKEWITFFD-------QQNCPSFGVNSHNK----------DNVKEFLKFLQAHVRN  130 (298)
Q Consensus        80 VlNK~DL~~---~~~~~~~~~~~~-------~~~~~vi~iSa~~~----------~gi~~L~~~l~~~i~~  130 (298)
                      |+||+|-..   .+.+.+..+.|-       ++.++++.-|+..|          ..+..|.+.|.++++.
T Consensus       126 VvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         126 VINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            999999753   344555555553       45678999998776          3578888888888765

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.18  E-value=4e-06  Score=68.78  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|+|||||+|++..
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~   22 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVK   22 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999999983

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.18  E-value=2.8e-06  Score=70.19  Aligned_cols=21  Identities=33%  Similarity=0.722  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||+|.|.+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~   21 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKT   21 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhh
Confidence            478999999999999999974

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.18  E-value=5.7e-06  Score=79.55  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=58.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC---CcccHHHhccCCC-CCCcEEEEEecCCCCC--hhhH----HHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPF---SSEFDQLRNHHPF-SSSRRILVLNKMDLAS--PTQF----KEWITF   98 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~---~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~--~~~~----~~~~~~   98 (298)
                      ||| .++++.+...+..+|++++|+|+..+.   .........++.. ...++++++||+|+.+  .+..    +++.++
T Consensus        93 pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~  171 (426)
T TIGR00483        93 PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL  171 (426)
T ss_pred             CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence            665 678888888889999999999998762   2221111111111 2357889999999974  2222    233333


Q ss_pred             HHccC-----CCEEEEecCCCcCHHH
Q 022351           99 FDQQN-----CPSFGVNSHNKDNVKE  119 (298)
Q Consensus        99 ~~~~~-----~~vi~iSa~~~~gi~~  119 (298)
                      ++..+     .+++++||+++.|+.+
T Consensus       172 ~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       172 IKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHcCCCcccceEEEeeccccccccc
Confidence            43333     4689999999999875

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=9.3e-06  Score=78.13  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=70.6

Q ss_pred             chhhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH------
Q 022351           28 YGPHMAAATRAIADR-MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD------  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~-l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~------  100 (298)
                      -|||+  ++..|+.. ..-+|+|++|+.+.++...+-.+-....+..+.|+++.+||+|.... ..+.....+-      
T Consensus       208 TPGHa--AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~  284 (683)
T KOG1145|consen  208 TPGHA--AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVV  284 (683)
T ss_pred             CCcHH--HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccH
Confidence            49996  34445544 67789999999999887776655555555689999999999997532 2333333332      


Q ss_pred             -ccCC--CEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 -QQNC--PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 -~~~~--~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                       ..|.  +++++||++++|++.|.+.+.-+.
T Consensus       285 E~~GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  285 EDLGGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             HHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence             2232  689999999999999998876544

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.17  E-value=4.4e-06  Score=70.06  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=37.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ...+|+++|.+|||||||+|.|..           ++.....+..|.+.  ..+... ...+.++||||..
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~l~D~~G~~   70 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLL-----------GEVVHTSPTIGSNV--EEIVYK-NIRFLMWDIGGQE   70 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHcc-----------CCCCCcCCccccce--EEEEEC-CeEEEEEECCCCH
Confidence            356899999999999999999973           12222333333332  223222 3358899999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.17  E-value=4e-06  Score=80.58  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=59.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCC--CCCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhH----HHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARI--PFSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQF----KEWITF   98 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~--p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~----~~~~~~   98 (298)
                      -||| .+..+.+...+..+|++++|+|+..  +..........++...+ .++++++||+|+.+.  +..    ++..+.
T Consensus        91 tpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~  169 (425)
T PRK12317         91 CPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKL  169 (425)
T ss_pred             CCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHH
Confidence            3676 6677777777899999999999987  44443333322222234 468999999999752  211    222233


Q ss_pred             HHccC-----CCEEEEecCCCcCHHH
Q 022351           99 FDQQN-----CPSFGVNSHNKDNVKE  119 (298)
Q Consensus        99 ~~~~~-----~~vi~iSa~~~~gi~~  119 (298)
                      +...+     .+++++||+++.|+++
T Consensus       170 l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        170 LKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHhhCCCcCcceEEEeecccCCCccc
Confidence            33333     3689999999999876

>cd04122 Rab14 Rab14 subfamily

Probab=98.17  E-value=4.7e-06  Score=69.00  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.+|||||||+|++.
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~   23 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFT   23 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999998

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04123 Rab21 Rab21 subfamily

Probab=98.17  E-value=4.7e-06  Score=68.03  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +++++|.+|||||||+|+++.
T Consensus         2 ki~i~G~~~~GKStli~~l~~   22 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVE   22 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999999984

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.17  E-value=2.9e-06  Score=69.46  Aligned_cols=55  Identities=20%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||+|++.+.           ......+..|.+..  .+.+. ...+.++||||...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~-----------~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~G~~~   55 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLG-----------EVVTTIPTIGFNVE--TVEYK-NVSFTVWDVGGQDK   55 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC-----------CCCCCCCCcCcceE--EEEEC-CEEEEEEECCCChh
Confidence            4789999999999999999841           12222333333322  22222 23588999999654

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.16  E-value=3.2e-06  Score=76.42  Aligned_cols=69  Identities=20%  Similarity=0.246  Sum_probs=40.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeec-----CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVS-----PQPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~-----~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|+|||||+|+|+.. +.+.....-....+.+.     ...|+|.+.....+ +.+.++.++||||...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence            4799999999999999999742 22211000000111111     23477776554332 2344688999999764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04142 RRP22 RRP22 subfamily

Probab=98.16  E-value=3.4e-06  Score=72.63  Aligned_cols=57  Identities=25%  Similarity=0.498  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||+|.+..           +.... ...|.++.+..  .+.+.+. -.+.|+||||...
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~-----------~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~   61 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLA-----------QEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR   61 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHc-----------CCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence            789999999999999999983           22211 12343333322  2222221 1367999999854

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.16  E-value=1.8e-05  Score=76.41  Aligned_cols=88  Identities=20%  Similarity=0.238  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN  116 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g  116 (298)
                      +.....+..+|++++|+|+..+.+..+. +...+...++|+++|+||+|+... ..+.+   .+..+.+++.+||++ .|
T Consensus       274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~~---~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEFF---VSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhhh---hhhcCCceEEEEEec-CC
Confidence            3455788999999999999877654333 333232357899999999999654 22221   223456788999997 68


Q ss_pred             HHHHHHHHHHHHHh
Q 022351          117 VKEFLKFLQAHVRN  130 (298)
Q Consensus       117 i~~L~~~l~~~i~~  130 (298)
                      ++++++.+.+.+.+
T Consensus       348 I~~~~~~L~~~i~~  361 (442)
T TIGR00450       348 IKALVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888777655

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.15  E-value=5.7e-06  Score=68.91  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.+|||||||+|+++.
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999983

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04177 RSR1 RSR1 subgroup

Probab=98.15  E-value=7.6e-06  Score=67.96  Aligned_cols=102  Identities=18%  Similarity=0.060  Sum_probs=65.5

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..++..+........+..+|.+++|+|...+.+-..     ..+.......+.|++++.||+|+.+...  .+.....
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~  132 (168)
T cd04177          53 ILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL  132 (168)
T ss_pred             EEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH
Confidence            35533334555566677889999999999876432111     1122222235789999999999965321  1222222


Q ss_pred             HHccC-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351           99 FDQQN-CPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        99 ~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .+..+ .+++.+||+++.|++++++++...
T Consensus       133 ~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~  162 (168)
T cd04177         133 SQQWGNVPFYETSARKRTNVDEVFIDLVRQ  162 (168)
T ss_pred             HHHcCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            22334 578999999999999999888654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.15  E-value=4.9e-06  Score=70.59  Aligned_cols=59  Identities=25%  Similarity=0.349  Sum_probs=37.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ....+|+++|.+|||||||+|.|.+           .+...+.+..+.+  ...+.+ .+..+.++||||...
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~-----------~~~~~~~~t~~~~--~~~~~~-~~~~~~~~D~~G~~~   73 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKN-----------DRLAQHQPTQHPT--SEELAI-GNIKFTTFDLGGHQQ   73 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhc-----------CCCcccCCccccc--eEEEEE-CCEEEEEEECCCCHH
Confidence            3457999999999999999999983           2222222222222  122222 233578999999743

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.15  E-value=4.5e-06  Score=70.24  Aligned_cols=101  Identities=13%  Similarity=0.011  Sum_probs=64.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhHH--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQFK--------   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~--------   93 (298)
                      -|..++..+........+..+|++|+|+|...+.+..+.  .+...+.  ..+.|+++|.||+|+.+.....        
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~  132 (175)
T cd01874          53 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ  132 (175)
T ss_pred             EEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccC
Confidence            477665555544444578999999999999876432221  1221111  2468999999999986532211        


Q ss_pred             -----HHHH-HHHccC-CCEEEEecCCCcCHHHHHHHHHH
Q 022351           94 -----EWIT-FFDQQN-CPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        94 -----~~~~-~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                           +..+ ..++.+ ..++.+||+++.|++++++.+..
T Consensus       133 ~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         133 KPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             CCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence                 1111 112233 47899999999999999988764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04125 RabA_like RabA-like subfamily

Probab=98.15  E-value=4.7e-06  Score=70.65  Aligned_cols=58  Identities=22%  Similarity=0.288  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ++|+++|.+|||||||+|++..           +.... ..+..|.+.....+.+... -.+.++||||..
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~   60 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTE-----------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE   60 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc-----------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence            3789999999999999999983           22211 2233333333333333222 136789999953

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04133 Rop_like Rop subfamily

Probab=98.15  E-value=3.6e-06  Score=71.17  Aligned_cols=103  Identities=16%  Similarity=0.022  Sum_probs=67.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChh-----------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPT-----------   90 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~-----------   90 (298)
                      -|..+++.+.......++..+|.+|+|.|..++.+..+.  .+...+.  ..+.|+++|.||+||.+..           
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  132 (176)
T cd04133          53 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP  132 (176)
T ss_pred             EEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC
Confidence            566555555555555679999999999999876543321  1222111  2468999999999995421           


Q ss_pred             -hHHHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351           91 -QFKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        91 -~~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                       ..++..+..+..+. .++.+||+++.|++++++.+.+.+
T Consensus       133 v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             CCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence             11222222233455 588999999999999999887654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00157 Rho Rho (Ras homology) family

Probab=98.14  E-value=2.6e-06  Score=70.48  Aligned_cols=100  Identities=18%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChhhH---------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPTQF---------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~~~---------   92 (298)
                      -|..++..+........+..+|++++|+|+..+.+...  ..+...+  ...+.|+++|+||+|+......         
T Consensus        52 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~  131 (171)
T cd00157          52 LWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKE  131 (171)
T ss_pred             EEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCC
Confidence            45443333333333345789999999999986433221  1111111  1247999999999999755422         


Q ss_pred             ----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHH
Q 022351           93 ----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus        93 ----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~  125 (298)
                          +...+.....+. +++.+||+++.|++++++.+.
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  169 (171)
T cd00157         132 PITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI  169 (171)
T ss_pred             ccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence                122222233444 789999999999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.14  E-value=6.1e-06  Score=70.09  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh------------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP------------   89 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~------------   89 (298)
                      -|......+........+..+|++|+|+|...+.+..+  ..+...+.  ..+.|+++|.||+||.+.            
T Consensus        57 iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~  136 (182)
T cd04172          57 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQ  136 (182)
T ss_pred             EEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCC
Confidence            57776666665555567999999999999987643322  11211111  146899999999998531            


Q ss_pred             --hhHHHHHHHHHccCC-CEEEEecCCCcC-HHHHHHHHHH
Q 022351           90 --TQFKEWITFFDQQNC-PSFGVNSHNKDN-VKEFLKFLQA  126 (298)
Q Consensus        90 --~~~~~~~~~~~~~~~-~vi~iSa~~~~g-i~~L~~~l~~  126 (298)
                        -..++..++.++.+. .++.+||+++.+ ++++...+..
T Consensus       137 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~  177 (182)
T cd04172         137 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  177 (182)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence              011223333334564 789999999998 9998887764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.14  E-value=3.3e-06  Score=72.18  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=38.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCcccee---ecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHAT---VSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~---~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||+|+|+.. +.......-......   .....|+|.......+. ....+.++||||...
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~   77 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD   77 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence            7999999999999999999852 111100000000000   01234556554433332 233588999999754

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.14  E-value=3e-06  Score=80.30  Aligned_cols=116  Identities=17%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             HHHhhhcceecccCC---------C------ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH--HhccCCC
Q 022351           10 KLAREIGTAVSQKKG---------G------GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ--LRNHHPF   72 (298)
Q Consensus        10 ~~~~~~g~~~~~~~~---------~------~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~--l~~~l~~   72 (298)
                      .|+||.|.+.....-         -      -.-|||. .+.-.+.+.+.-|.-.|+|+||..+...+...  ...+  .
T Consensus        50 diERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV-DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl--e  126 (603)
T COG0481          50 DIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--E  126 (603)
T ss_pred             hhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc-ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH--H
Confidence            478999988776553         1      2238994 56666777888899999999999876544321  1111  3


Q ss_pred             CCCcEEEEEecCCCCC--hhhHHHHHHHHHccCC---CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           73 SSSRRILVLNKMDLAS--PTQFKEWITFFDQQNC---PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        73 ~~k~~IiVlNK~DL~~--~~~~~~~~~~~~~~~~---~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..++-|+||+||..  ++.+..-++..  .|+   +.+.+||++|.|++++++.|.+.++.
T Consensus       127 ~~LeIiPViNKIDLP~Adpervk~eIe~~--iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         127 NNLEIIPVLNKIDLPAADPERVKQEIEDI--IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             cCcEEEEeeecccCCCCCHHHHHHHHHHH--hCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence            6788999999999954  33333333332  233   57899999999999999999988775

>PLN03108 Rab family protein; Provisional

Probab=98.14  E-value=1.1e-05  Score=69.92  Aligned_cols=103  Identities=17%  Similarity=0.062  Sum_probs=67.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-H-HhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-Q-LRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~-l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|...............+..+|.+++|+|+..+.+.... . +....  .....|+++|.||+||....  ..+...++.
T Consensus        59 l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~  138 (210)
T PLN03108         59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA  138 (210)
T ss_pred             EEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH
Confidence            455444455555566788899999999999865332211 1 11111  12468999999999996532  122223333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +..+.+++.+||+++.|+++++.++...+
T Consensus       139 ~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        139 KEHGLIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999887766544

>cd04140 ARHI_like ARHI subfamily

Probab=98.14  E-value=4.7e-06  Score=69.04  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|+++.
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~   23 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVK   23 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999983

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.13  E-value=1.6e-05  Score=66.57  Aligned_cols=103  Identities=17%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      +.||+ .+........+..+|.+++|+|..+......     ..+.+.....+.|+++|.||+|+.....  ........
T Consensus        55 D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~  133 (180)
T cd04137          55 DTAGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA  133 (180)
T ss_pred             ECCCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH
Confidence            34555 4444444567888999999999876321111     1122221224689999999999964321  12222233


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +..+.+++.+||+++.|+.+++.++.+.+..
T Consensus       134 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         134 ESWGAAFLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            3445678999999999999999999887765

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04149 Arf6 Arf6 subfamily

Probab=98.13  E-value=5.5e-06  Score=69.19  Aligned_cols=58  Identities=17%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      +.++|+++|.+|||||||+++|..           +.....  .|.++.+...+.. ..-.+.++||||...
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~-----------~~~~~~--~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~   65 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKL-----------GQSVTT--IPTVGFNVETVTY-KNVKFNVWDVGGQDK   65 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHcc-----------CCCccc--cCCcccceEEEEE-CCEEEEEEECCCCHH
Confidence            457999999999999999999972           111112  2322222222222 223588999999743

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04134 Rho3 Rho3 subfamily

Probab=98.12  E-value=4e-06  Score=71.39  Aligned_cols=104  Identities=15%  Similarity=0.056  Sum_probs=65.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHh-ccCC-CCCCcEEEEEecCCCCChhhHH--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLR-NHHP-FSSSRRILVLNKMDLASPTQFK--------   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~-~~l~-~~~k~~IiVlNK~DL~~~~~~~--------   93 (298)
                      -|..+++.+........+..+|++++|+|...+.+..+.  .+. .+.. ..+.|+++|.||+||.......        
T Consensus        52 i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~  131 (189)
T cd04134          52 LWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGK  131 (189)
T ss_pred             EEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccC
Confidence            465554444433334568899999999998876433221  111 1111 2478999999999996543211        


Q ss_pred             ------HHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           94 ------EWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        94 ------~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                            +..+.....+ ..++.+||+++.|+++++.++.+.+-
T Consensus       132 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         132 HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence                  1112222233 46899999999999999999887654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.12  E-value=5.7e-06  Score=80.55  Aligned_cols=90  Identities=20%  Similarity=0.174  Sum_probs=60.9

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH---HhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHH----
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ---LRNHHPFSSSRRILVLNKMDLASP--TQFKEWITF----   98 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~---l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~----   98 (298)
                      -||| .+..+.+...+..+|++++|+|+..+.......   +...+  ..+++++++||+|+.+.  +.+....+.    
T Consensus       114 TPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~  190 (474)
T PRK05124        114 TPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLTF  190 (474)
T ss_pred             CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHHH
Confidence            4888 567777777789999999999998876544332   22221  23578899999999742  223322222    


Q ss_pred             HHcc----CCCEEEEecCCCcCHHHH
Q 022351           99 FDQQ----NCPSFGVNSHNKDNVKEF  120 (298)
Q Consensus        99 ~~~~----~~~vi~iSa~~~~gi~~L  120 (298)
                      +...    ..+++++||+++.|+.++
T Consensus       191 ~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        191 AEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHhcCCCCCceEEEEEeecCCCcccc
Confidence            2222    357999999999998754

>PRK12735 elongation factor Tu; Reviewed

Probab=98.12  E-value=4.8e-06  Score=79.31  Aligned_cols=71  Identities=20%  Similarity=0.289  Sum_probs=46.9

Q ss_pred             CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEe
Q 022351          136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLD  206 (298)
Q Consensus       136 ~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liD  206 (298)
                      |....+.++++++|.+|+|||||+|+|+....    ..++.+.        .......|+|.+.....+. .+.++.++|
T Consensus         6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~----~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iD   81 (396)
T PRK12735          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLA----KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVD   81 (396)
T ss_pred             cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhh----hcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEE
Confidence            34557789999999999999999999985210    0111111        1112356888887655443 334689999


Q ss_pred             CCCC
Q 022351          207 TPGI  210 (298)
Q Consensus       207 TPGi  210 (298)
                      |||.
T Consensus        82 tPGh   85 (396)
T PRK12735         82 CPGH   85 (396)
T ss_pred             CCCH
Confidence            9996

>cd04175 Rap1 Rap1 subgroup

Probab=98.12  E-value=5.3e-06  Score=68.41  Aligned_cols=21  Identities=38%  Similarity=0.512  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+|+++|.+|||||||+|++.
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~   22 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFV   22 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00157 Rho Rho (Ras homology) family

Probab=98.12  E-value=4.9e-06  Score=68.83  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|+|+.
T Consensus         1 iki~i~G~~~~GKSsli~~l~~   22 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTT   22 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999984

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.12  E-value=8.4e-06  Score=67.06  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|+|.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~   21 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFH   21 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            378999999999999999998

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04112 Rab26 Rab26 subfamily

Probab=98.11  E-value=6e-06  Score=70.36  Aligned_cols=20  Identities=45%  Similarity=0.627  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|.+.
T Consensus         2 Ki~vvG~~~vGKTSli~~~~   21 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFK   21 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            78999999999999999997

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=98.11  E-value=6.4e-06  Score=70.75  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..++|+++|.+|||||||+|.+.
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~   27 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFA   27 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHh
Confidence            35799999999999999999998

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=1.1e-05  Score=68.86  Aligned_cols=105  Identities=18%  Similarity=0.033  Sum_probs=77.3

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HHhccCC---CCCCcEEEEEecCCCCChhhH--HHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QLRNHHP---FSSSRRILVLNKMDLASPTQF--KEWITF   98 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~~l~---~~~k~~IiVlNK~DL~~~~~~--~~~~~~   98 (298)
                      --|....+.++...+..++..|+-|++|+|.....+..+. .+.+.+.   ..+.+.++|-||+|+.....+  +.-..+
T Consensus        64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l  143 (207)
T KOG0078|consen   64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL  143 (207)
T ss_pred             EEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence            3799999999999999999999999999999865443332 1222221   247899999999999763221  222223


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ..+.|..++.+||+++.++++..-.|...+.
T Consensus       144 A~e~G~~F~EtSAk~~~NI~eaF~~La~~i~  174 (207)
T KOG0078|consen  144 AREYGIKFFETSAKTNFNIEEAFLSLARDIL  174 (207)
T ss_pred             HHHhCCeEEEccccCCCCHHHHHHHHHHHHH
Confidence            3356889999999999999988777766554

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.11  E-value=4.5e-06  Score=68.73  Aligned_cols=21  Identities=43%  Similarity=0.562  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||+|++.+
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999999983

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.10  E-value=3.6e-06  Score=76.11  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             hHHHHH-HHHHHhcCCCCeEEEEEeCCCCCC--ccc--H----HHhccCC-CCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           31 HMAAAT-RAIADRMPLVDIILEVRDARIPFS--SEF--D----QLRNHHP-FSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        31 hm~~~~-~~i~~~l~~aDlVl~VvDa~~p~~--~~~--~----~l~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      ||++.+ -...+.+++++++++|+|...+..  .++  .    ++..+-+ ...+|.+||+||+|+...+.  ++++.+.
T Consensus       259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~  338 (366)
T KOG1489|consen  259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKR  338 (366)
T ss_pred             cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHH
Confidence            455554 345566778999999999976521  111  1    1211211 25789999999999953321  1333333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      +  .+..++++||++++|+.+|++.++.
T Consensus       339 l--q~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  339 L--QNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             c--CCCcEEEeeeccccchHHHHHHHhh
Confidence            3  1225899999999999999988764

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=1.1e-05  Score=73.22  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=75.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~   99 (298)
                      ..-||| +--+-.|..-..-.|-.++|++|..|..  ...+.|..+---.-+.++++-||+||+..+..    +++.++.
T Consensus        91 VDaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fv  169 (415)
T COG5257          91 VDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFV  169 (415)
T ss_pred             eeCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHh
Confidence            445899 5567777777788899999999986532  22233332211256889999999999987542    3344444


Q ss_pred             H---ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 D---QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~---~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +   ..+.+++++||..+.+++.|+++|.++++.
T Consensus       170 kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         170 KGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             cccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            3   234589999999999999999999998875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.10  E-value=1.1e-05  Score=81.50  Aligned_cols=91  Identities=21%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCC--hhhHHHHHH----HHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLAS--PTQFKEWIT----FFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~--~~~~~~~~~----~~~  100 (298)
                      -||| .++.+.+...+..+|++++|+|+..+......+...++.. ..+++++++||+|+.+  .+..+...+    +++
T Consensus       111 tPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~  189 (632)
T PRK05506        111 TPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAA  189 (632)
T ss_pred             CCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHH
Confidence            3888 5667777788999999999999988766554333222222 2367888999999974  222222222    222


Q ss_pred             ccCC---CEEEEecCCCcCHHH
Q 022351          101 QQNC---PSFGVNSHNKDNVKE  119 (298)
Q Consensus       101 ~~~~---~vi~iSa~~~~gi~~  119 (298)
                      ..++   +++++||+++.|+.+
T Consensus       190 ~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        190 KLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HcCCCCccEEEEecccCCCccc
Confidence            3343   589999999999873

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.10  E-value=8.4e-06  Score=69.00  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+++|.+|||||||+|++.
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~   24 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLK   24 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999997

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04148 RGK RGK subfamily

Probab=98.10  E-value=1.5e-05  Score=69.82  Aligned_cols=89  Identities=25%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             hcC-CCCeEEEEEeCCCCCCccc-HHH----hccCCCCCCcEEEEEecCCCCChhhH--HHHHHHHHccCCCEEEEecCC
Q 022351           42 RMP-LVDIILEVRDARIPFSSEF-DQL----RNHHPFSSSRRILVLNKMDLASPTQF--KEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        42 ~l~-~aDlVl~VvDa~~p~~~~~-~~l----~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      .+. .+|++++|+|+.++.+... ..+    .......+.|+++|.||+|+.+...+  +...+.....+.+++.+||++
T Consensus        68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~  147 (221)
T cd04148          68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGL  147 (221)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence            345 8999999999987633221 111    11111247899999999999654321  112222223466889999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      +.|++++++.+...+..
T Consensus       148 ~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         148 QHNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887753

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.10  E-value=1.3e-05  Score=83.89  Aligned_cols=101  Identities=18%  Similarity=0.135  Sum_probs=67.2

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----------------
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----------------   91 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----------------   91 (298)
                      -||| ..+..........+|++++|+|+..++..........+...++|+++|+||+|+.+...                
T Consensus       533 TPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~  611 (1049)
T PRK14845        533 TPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQ  611 (1049)
T ss_pred             CCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHH
Confidence            3676 44544445567889999999999876655544444443346789999999999974211                


Q ss_pred             --HHHH-------HHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           92 --FKEW-------ITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        92 --~~~~-------~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                        .++.       ...+.+.               ..+++++||++|+|+++|+.+|....+
T Consensus       612 ~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        612 HALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence              0111       0011111               237899999999999999998875544

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.09  E-value=6.8e-06  Score=70.62  Aligned_cols=100  Identities=15%  Similarity=0.004  Sum_probs=63.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCCh-----------
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASP-----------   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~-----------   89 (298)
                      .-|......+..+  ..++..+|++|+|+|..++.+..+.  .+...+.  ..+.|+++|.||+||...           
T Consensus        69 ~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~  146 (195)
T cd01873          69 RLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP  146 (195)
T ss_pred             EEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccc
Confidence            3677533333222  2468999999999999876443221  1221111  146899999999998631           


Q ss_pred             --------h--hHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           90 --------T--QFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        90 --------~--~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                              .  ..++..+..++.+.+++.+||+++.|++++++.+.+
T Consensus       147 ~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         147 LARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             cccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence                    0  112222333345678899999999999999887753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=98.09  E-value=6.1e-06  Score=68.56  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.||||||||+|++.
T Consensus         2 ~ki~liG~~~~GKTsli~~~~   22 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFV   22 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK10218 GTP-binding protein; Provisional

Probab=98.09  E-value=7.9e-06  Score=81.57  Aligned_cols=102  Identities=19%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh---hhHHHHHHHHHc---
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP---TQFKEWITFFDQ---  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~---~~~~~~~~~~~~---  101 (298)
                      .||| ..+...+...+..+|.+|+|+|+..........+...+...+.|.++++||+|+...   ..+++..+.+..   
T Consensus        75 TPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~  153 (607)
T PRK10218         75 TPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA  153 (607)
T ss_pred             CCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCc
Confidence            3666 567777888999999999999998765554444433333468899999999998532   234445555422   


Q ss_pred             ----cCCCEEEEecCCCc----------CHHHHHHHHHHHHHh
Q 022351          102 ----QNCPSFGVNSHNKD----------NVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ----~~~~vi~iSa~~~~----------gi~~L~~~l~~~i~~  130 (298)
                          ..++++++||.++.          ++..|++.+...++.
T Consensus       154 ~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        154 TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence                24679999999997          588888888877764

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.09  E-value=6.1e-06  Score=67.58  Aligned_cols=20  Identities=40%  Similarity=0.575  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.||||||||+|+++
T Consensus         2 ki~~~G~~~~GKTsl~~~l~   21 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFM   21 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999998

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04127 Rab27A Rab27a subfamily

Probab=98.09  E-value=8.7e-06  Score=68.21  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+++|.+|||||||+|++.
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~   25 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYT   25 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4789999999999999999997

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.08  E-value=8.2e-06  Score=67.89  Aligned_cols=20  Identities=20%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|+++
T Consensus         2 ki~vvG~~~vGKTsli~~~~   21 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHL   21 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999998

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=2.3e-05  Score=66.30  Aligned_cols=105  Identities=17%  Similarity=0.137  Sum_probs=76.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      -.|....++++.-.+..+...|+-||+|.|.+.-.+..+     .++.++. ..+.|.++|.||+|+.+...+  ++..+
T Consensus        61 QIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~  139 (205)
T KOG0084|consen   61 QIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQE  139 (205)
T ss_pred             EeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHH
Confidence            379999999999999999999999999999986322222     1222221 246799999999999754322  22223


Q ss_pred             HHHccCCC-EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFDQQNCP-SFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~~~~~~-vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +..+.+.+ ++.+||+...++++.+..+...+..
T Consensus       140 fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  140 FADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             HHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence            33356777 8999999999999988888776655

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.08  E-value=4.4e-06  Score=69.26  Aligned_cols=20  Identities=30%  Similarity=0.571  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.||||||||+|+|.
T Consensus         3 ~i~~iG~~~~GKstl~~~l~   22 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQ   22 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            69999999999999999987

>cd01890 LepA LepA subfamily

Probab=98.08  E-value=5.1e-06  Score=69.50  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||+|+|++
T Consensus         2 ni~~vG~~~~GKssL~~~l~~   22 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLE   22 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHH
Confidence            689999999999999999985

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.08  E-value=7.4e-06  Score=81.57  Aligned_cols=61  Identities=25%  Similarity=0.345  Sum_probs=44.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~  212 (298)
                      .+...|+++|.+|+|||||+|+|.+           . .......+|+|.++..+.+  .+...+.++||||-..
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~-----------~-~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~  147 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRK-----------T-KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA  147 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh-----------C-CcccccCCceeecceEEEEEECCCcEEEEEECCCCcc
Confidence            3556899999999999999999983           1 1223445788888765443  2333699999999643

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04114 Rab30 Rab30 subfamily

Probab=98.08  E-value=1.1e-05  Score=66.82  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+++++|.+|||||||++++.
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~   28 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFT   28 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999997

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.07  E-value=1.1e-05  Score=64.66  Aligned_cols=83  Identities=22%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             hcCCCCeEEEEEeCCCC-------CCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-CCCEEEEecCC
Q 022351           42 RMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNSHN  113 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p-------~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~vi~iSa~~  113 (298)
                      ...+++.++.++|....       .......+..... .+.|+++++||+|+............+... ..+++++||.+
T Consensus        70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAET  148 (161)
T ss_pred             HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCC
Confidence            34455555555554433       2122222333332 278999999999998654233333333222 34789999999


Q ss_pred             CcCHHHHHHHHH
Q 022351          114 KDNVKEFLKFLQ  125 (298)
Q Consensus       114 ~~gi~~L~~~l~  125 (298)
                      +.|++++.++|.
T Consensus       149 ~~gv~~~~~~l~  160 (161)
T TIGR00231       149 GKNIDSAFKIVE  160 (161)
T ss_pred             CCCHHHHHHHhh
Confidence            999999988874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.07  E-value=7.8e-06  Score=77.88  Aligned_cols=71  Identities=20%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEe
Q 022351          136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLD  206 (298)
Q Consensus       136 ~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liD  206 (298)
                      |....+.++++++|.+++|||||+++|+....    ..++...        ......+|+|.+.....+. .+.++.++|
T Consensus         6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~----~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iD   81 (396)
T PRK00049          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLA----KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVD   81 (396)
T ss_pred             ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhh----hccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEE
Confidence            34456779999999999999999999985311    0011110        0111257889887755543 334688999


Q ss_pred             CCCC
Q 022351          207 TPGI  210 (298)
Q Consensus       207 TPGi  210 (298)
                      |||.
T Consensus        82 tPG~   85 (396)
T PRK00049         82 CPGH   85 (396)
T ss_pred             CCCH
Confidence            9996

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.07  E-value=6.7e-06  Score=68.96  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.||||||||+|+++.
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999999983

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.06  E-value=1.1e-05  Score=69.23  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|.++
T Consensus         1 ~KivivG~~~vGKTsli~~l~   21 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYV   21 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999998

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=4.4e-05  Score=64.61  Aligned_cols=105  Identities=19%  Similarity=0.106  Sum_probs=77.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC--C-CCcEEEEEecCCCCChhhHH--HHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF--S-SSRRILVLNKMDLASPTQFK--EWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~--~-~k~~IiVlNK~DL~~~~~~~--~~~~~   98 (298)
                      -|...+++++.-.+..++.++.++|.|.|..+-.+-.+  ..|.....+  . +.-+++|.||.||++..++.  +-...
T Consensus        75 lWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~k  154 (221)
T KOG0094|consen   75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERK  154 (221)
T ss_pred             EEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHH
Confidence            79999999999999999999999999999986433222  223333222  2 35577899999999875432  22222


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      -++.+..++.+||+.|.+++++...|...+++
T Consensus       155 Akel~a~f~etsak~g~NVk~lFrrIaa~l~~  186 (221)
T KOG0094|consen  155 AKELNAEFIETSAKAGENVKQLFRRIAAALPG  186 (221)
T ss_pred             HHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence            33556678999999999999999988877665

>cd04136 Rap_like Rap-like subfamily

Probab=98.05  E-value=7.7e-06  Score=67.06  Aligned_cols=21  Identities=43%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+|+++|.+|||||||+|++.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~   22 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFV   22 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999998

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00876 Ras Ras family

Probab=98.05  E-value=6.1e-06  Score=67.21  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||+|++++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999999983

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=4.9e-06  Score=70.06  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=77.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~   98 (298)
                      -|..++.++.--...-++..|+.+|.|.|..+..+...     .+|.+... .+.-+.+|.||+||...  -..++...+
T Consensus        58 IWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y  136 (200)
T KOG0092|consen   58 IWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY  136 (200)
T ss_pred             EEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH
Confidence            69999888877777778999999999999986432211     12222211 23445569999999873  244566667


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+..++.+||+++.++++|...|.+.++.
T Consensus       137 Ae~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~  168 (200)
T KOG0092|consen  137 AESQGLLFFETSAKTGENVNEIFQAIAEKLPC  168 (200)
T ss_pred             HHhcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence            77788899999999999999999999888775

>cd00879 Sar1 Sar1 subfamily

Probab=98.05  E-value=1e-05  Score=68.50  Aligned_cols=57  Identities=26%  Similarity=0.358  Sum_probs=35.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      ....+++++|.+|||||||+|+|.+           .+.....+..+.+  ...+.+. +..+.++||||-
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~-----------~~~~~~~~T~~~~--~~~i~~~-~~~~~l~D~~G~   73 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKD-----------DRLAQHVPTLHPT--SEELTIG-NIKFKTFDLGGH   73 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc-----------CCCcccCCccCcc--eEEEEEC-CEEEEEEECCCC
Confidence            3467899999999999999999983           1111222222222  1222232 335789999995

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.05  E-value=1.6e-05  Score=76.82  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCC--C--hhhHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLA--S--PTQFK-   93 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~--~--~~~~~-   93 (298)
                      .-||| .++.+.+...+..+|++++|+|+..+..       ....+...++...+.| +|+++||+|..  +  .+..+ 
T Consensus        91 DtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~  169 (446)
T PTZ00141         91 DAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDE  169 (446)
T ss_pred             ECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHH
Confidence            34898 6788999999999999999999987642       2222222233335666 56899999943  2  22222 


Q ss_pred             ---HHHHHHHccC-----CCEEEEecCCCcCHHH
Q 022351           94 ---EWITFFDQQN-----CPSFGVNSHNKDNVKE  119 (298)
Q Consensus        94 ---~~~~~~~~~~-----~~vi~iSa~~~~gi~~  119 (298)
                         +..+.+...+     .+++++|+.+++|+.+
T Consensus       170 i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        170 IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             HHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence               3333343333     4689999999999853

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.05  E-value=2.4e-05  Score=78.01  Aligned_cols=101  Identities=18%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             cc-hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh--------------
Q 022351           27 WY-GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ--------------   91 (298)
Q Consensus        27 wf-pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~--------------   91 (298)
                      |. ||| ..+.......+..+|++++|+|++............++...+.|+++++||+|+.+...              
T Consensus        76 iDTPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         76 IDTPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             EECCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            44 555 56666666678899999999999875544433333333346899999999999863110              


Q ss_pred             ---HH--------HHHHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           92 ---FK--------EWITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        92 ---~~--------~~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                         +.        +...++...               ..+++++||.+++|+++|++.+....
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence               00        111122211               23689999999999999988876433

>cd04131 Rnd Rnd subfamily

Probab=98.04  E-value=1e-05  Score=68.36  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh------------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP------------   89 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~------------   89 (298)
                      -|....+.+........+..+|++|+|+|...+.+-.+  ..+...+.  ..+.|+++|.||+||.+.            
T Consensus        53 iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~  132 (178)
T cd04131          53 LWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQ  132 (178)
T ss_pred             EEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCC
Confidence            57766556555555567899999999999987644322  11211111  246899999999998531            


Q ss_pred             --hhHHHHHHHHHccCC-CEEEEecCCCcC-HHHHHHHHHH
Q 022351           90 --TQFKEWITFFDQQNC-PSFGVNSHNKDN-VKEFLKFLQA  126 (298)
Q Consensus        90 --~~~~~~~~~~~~~~~-~vi~iSa~~~~g-i~~L~~~l~~  126 (298)
                        -..++..++.++.+. .++.+||+++++ ++++...+..
T Consensus       133 ~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         133 APVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             CCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence              011222233334565 689999999995 9998887765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.04  E-value=1.6e-05  Score=67.33  Aligned_cols=58  Identities=17%  Similarity=0.282  Sum_probs=36.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||++.+..           +......+..|..  ...+.. ..-.+.++||||..
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~-----------~~~~~~~~T~~~~--~~~~~~-~~~~~~l~D~~G~~   72 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKL-----------GEVVTTIPTIGFN--VETVEY-KNLKFTMWDVGGQD   72 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhc-----------CCccccCCccccc--eEEEEE-CCEEEEEEECCCCH
Confidence            3457999999999999999999962           1222222222222  222222 22358899999974

>cd04135 Tc10 TC10 subfamily

Probab=98.04  E-value=1.1e-05  Score=67.10  Aligned_cols=101  Identities=11%  Similarity=0.023  Sum_probs=62.3

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhhH----------
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQF----------   92 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~~----------   92 (298)
                      |..+............+..+|++++|+|..++.+..+.  .+...+  ...+.|+++|.||+|+.+....          
T Consensus        53 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  132 (174)
T cd04135          53 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEK  132 (174)
T ss_pred             EeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCC
Confidence            55433344333334568899999999999875332211  121111  1357999999999998643211          


Q ss_pred             ----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHH
Q 022351           93 ----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        93 ----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                          +......+..+. +++.+||+++.|++++++.+...
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         133 PVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence                111112223343 68899999999999999887643

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03126 Elongation factor Tu; Provisional

Probab=98.04  E-value=2.1e-05  Score=76.57  Aligned_cols=89  Identities=11%  Similarity=-0.021  Sum_probs=61.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhhH-H----HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQF-K----EWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~~-~----~~~~~~   99 (298)
                      -.-||| .++...+...+..+|++++|+|+..+......+...++...++| +++++||+|+.+.+.. +    +..+++
T Consensus       149 iDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l  227 (478)
T PLN03126        149 VDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL  227 (478)
T ss_pred             EECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence            345888 66888888889999999999999987665554444443345777 6789999999874432 2    223334


Q ss_pred             Hcc-----CCCEEEEecCCCc
Q 022351          100 DQQ-----NCPSFGVNSHNKD  115 (298)
Q Consensus       100 ~~~-----~~~vi~iSa~~~~  115 (298)
                      ...     ..+++++|+.++.
T Consensus       228 ~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        228 SSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HhcCCCcCcceEEEEEccccc
Confidence            333     3468899987763

>cd01893 Miro1 Miro1 subfamily

Probab=98.04  E-value=8.5e-06  Score=67.58  Aligned_cols=21  Identities=43%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +++++|.+|||||||+|++..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~   22 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVS   22 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            789999999999999999983

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.04  E-value=1.3e-05  Score=70.06  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+++++.          +.......+..|++.....+..... -.+.++||||...
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~----------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~   74 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLT----------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhh----------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence            4568999999999999999999872          1112223344444433323322221 2578999999754

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.03  E-value=9.9e-06  Score=74.04  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             hcCCCCeEEEEEeCCCCC-----Ccc---cHHHhcc-CCCCCCcEEEEEecCCC-CChhhHHHHHHHHHc-cCCCEEE-E
Q 022351           42 RMPLVDIILEVRDARIPF-----SSE---FDQLRNH-HPFSSSRRILVLNKMDL-ASPTQFKEWITFFDQ-QNCPSFG-V  109 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~-----~~~---~~~l~~~-l~~~~k~~IiVlNK~DL-~~~~~~~~~~~~~~~-~~~~vi~-i  109 (298)
                      .|+++-++++|+|.....     ...   ..+|..+ ....++|.+||+||+|+ .+.+..+...+++.. .++..+. +
T Consensus       234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I  313 (369)
T COG0536         234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI  313 (369)
T ss_pred             HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence            355688999999986311     111   1123333 11268999999999995 455666777777653 2443333 9


Q ss_pred             ecCCCcCHHHHHHHHHHHHHhh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      |+.+++|+++|+..+.+.+.+.
T Consensus       314 Sa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         314 SALTREGLDELLRALAELLEET  335 (369)
T ss_pred             ehhcccCHHHHHHHHHHHHHHh
Confidence            9999999999999998887763

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=1.7e-05  Score=63.92  Aligned_cols=111  Identities=12%  Similarity=0.042  Sum_probs=77.0

Q ss_pred             cccCCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC--CCcccHHHhccCCC---CCCcEEEEEecCCCCChhhHHH
Q 022351           20 SQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIP--FSSEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKE   94 (298)
Q Consensus        20 ~~~~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p--~~~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~   94 (298)
                      .++.-..|..|.......-++-+.++.|.||+|||..+-  ++....++...+.+   .+..+++++||.|........+
T Consensus        60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E  139 (182)
T KOG0072|consen   60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSE  139 (182)
T ss_pred             ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHH
Confidence            445557899888776667777899999999999998642  22222333333322   4577899999999864432222


Q ss_pred             HH-----HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           95 WI-----TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        95 ~~-----~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..     +.++...+.++..||.+++|+++.++|+.+-+++
T Consensus       140 ~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  140 VLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             HHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            22     2333445678999999999999999999876654

>PLN03110 Rab GTPase; Provisional

Probab=98.03  E-value=1.2e-05  Score=70.14  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=37.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ..++|+++|.+|||||||+++|.+          ........+..|.......+.+... -.+.|+||||-.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~----------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~   72 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTR----------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE   72 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence            457999999999999999999983          1111122222333222223333221 157889999953

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.03  E-value=2e-05  Score=78.77  Aligned_cols=83  Identities=14%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH-HccCCCEEEEecCCCcCHHHHH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFL  121 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~  121 (298)
                      ...+|+|+.|+|++...  .+..+...+...++|+++|+||+|+.+........+.+ +..+.+++++||++++|++++.
T Consensus        70 ~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~  147 (591)
T TIGR00437        70 NEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK  147 (591)
T ss_pred             hcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence            35799999999998632  22222222223579999999999996543322222333 2457799999999999999999


Q ss_pred             HHHHHH
Q 022351          122 KFLQAH  127 (298)
Q Consensus       122 ~~l~~~  127 (298)
                      +.+.+.
T Consensus       148 ~~i~~~  153 (591)
T TIGR00437       148 DAIRKA  153 (591)
T ss_pred             HHHHHH
Confidence            998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04109 Rab28 Rab28 subfamily

Probab=98.02  E-value=1.4e-05  Score=69.51  Aligned_cols=56  Identities=20%  Similarity=0.276  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC--CCEEEEeCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH--PNIYVLDTPGI  210 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~--~~~~liDTPGi  210 (298)
                      ++|+++|.+|||||||+|.|.+           .. -.....|..+.+..  .+.+.+.  -.+.|+||||-
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~-----------~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~   60 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAK-----------EG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ   60 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc-----------CC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence            3789999999999999999983           11 11222333333332  2333222  24789999995

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PRK12736 elongation factor Tu; Reviewed

Probab=98.01  E-value=1.3e-05  Score=76.26  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=46.5

Q ss_pred             CCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEc-cCCCEEEEe
Q 022351          136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIA-SHPNIYVLD  206 (298)
Q Consensus       136 ~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~-~~~~~~liD  206 (298)
                      |...++.++++++|.+++|||||+++|++....    .|+...        ...-...|+|.+.....+. ...++.++|
T Consensus         6 ~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iD   81 (394)
T PRK12736          6 FDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAE----RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVD   81 (394)
T ss_pred             hccCCCeeEEEEEccCCCcHHHHHHHHHhhhhh----hccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEE
Confidence            344567899999999999999999999853110    011110        0111256888887655543 334688999


Q ss_pred             CCCC
Q 022351          207 TPGI  210 (298)
Q Consensus       207 TPGi  210 (298)
                      |||.
T Consensus        82 tPGh   85 (394)
T PRK12736         82 CPGH   85 (394)
T ss_pred             CCCH
Confidence            9995

>cd04111 Rab39 Rab39 subfamily

Probab=98.00  E-value=1.5e-05  Score=69.24  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|.+..
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~   24 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTE   24 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999999999983

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04151 Arl1 Arl1 subfamily

Probab=98.00  E-value=1e-05  Score=66.35  Aligned_cols=20  Identities=30%  Similarity=0.703  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|+|.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~   20 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQ   20 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999996

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.00  E-value=1.4e-05  Score=66.61  Aligned_cols=102  Identities=20%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhHH--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQFK--------   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~--------   93 (298)
                      -|..+++.+........+..+|++++|+|...+.+..+.  .+...+.  ..+.|+++|.||+|+.+.....        
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~  132 (175)
T cd01870          53 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ  132 (175)
T ss_pred             EEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccC
Confidence            344433333333333567899999999998754221111  1111111  2478999999999986542211        


Q ss_pred             ------HHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351           94 ------EWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        94 ------~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                            ...+.....+ .+++.+||+++.|++++++++.+.
T Consensus       133 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         133 EPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             CCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence                  1111111223 368999999999999999988643

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.00  E-value=1.2e-05  Score=67.08  Aligned_cols=53  Identities=26%  Similarity=0.446  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      +|+++|.+|||||||+|.|.+           .......+..|.++.  .+.. ....+.++||||-
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~-----------~~~~~~~~t~g~~~~--~~~~-~~~~~~i~D~~G~   53 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQG-----------EIPKKVAPTVGFTPT--KLRL-DKYEVCIFDLGGG   53 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhC-----------CCCccccCcccceEE--EEEE-CCEEEEEEECCCc
Confidence            478999999999999999973           112223344444422  2222 2235889999995

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.99  E-value=1.3e-05  Score=67.79  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|++..
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~   22 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQ   22 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999983

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03127 Elongation factor Tu; Provisional

Probab=97.99  E-value=1.5e-05  Score=76.95  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=46.6

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc--------ceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCC
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR--------HATVSPQPGETKDIYSLKIAS-HPNIYVLDTPG  209 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~--------~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPG  209 (298)
                      ..+.++|+++|.+++|||||+|+|.+....    .|+.+        .......+|+|++.....+.. +.++.++||||
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~----~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG  133 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAE----EGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG  133 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHH----hhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence            356789999999999999999999743110    01111        011223478999887655533 34689999999


Q ss_pred             CC
Q 022351          210 IL  211 (298)
Q Consensus       210 i~  211 (298)
                      ..
T Consensus       134 h~  135 (447)
T PLN03127        134 HA  135 (447)
T ss_pred             cc
Confidence            74

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.98  E-value=1.7e-05  Score=66.42  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||+|++++
T Consensus         2 ki~ivG~~~vGKTsli~~~~~   22 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCK   22 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999983

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.98  E-value=7.2e-06  Score=66.02  Aligned_cols=20  Identities=30%  Similarity=0.649  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|+|.
T Consensus         2 kv~liG~~~vGKSsL~~~l~   21 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQ   21 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHc
Confidence            68999999999999999998

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PTZ00369 Ras-like protein; Provisional

Probab=97.98  E-value=1.4e-05  Score=67.90  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..++|+++|.+|||||||++++.
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~   26 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFI   26 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh
Confidence            35799999999999999999998

>cd04176 Rap2 Rap2 subgroup

Probab=97.98  E-value=1.5e-05  Score=65.54  Aligned_cols=21  Identities=43%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.||||||||++.+.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~   22 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFV   22 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=7.2e-06  Score=67.98  Aligned_cols=106  Identities=19%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----cHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE-----FDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-----~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      .-|..|+...-...+..+...++.||+|+||.++..-.     ...+...-...+.|+++.+||.|+.+.....+....+
T Consensus        72 ~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~  151 (197)
T KOG0076|consen   72 SFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVF  151 (197)
T ss_pred             EEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHh
Confidence            57999997666666667899999999999998742111     1112111113689999999999998765555444444


Q ss_pred             H------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 D------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .      +...++.++||.+++|+++-+.++...++.
T Consensus       152 ~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  152 GLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             hhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence            2      233478999999999999999998877654

>cd04135 Tc10 TC10 subfamily

Probab=97.97  E-value=1.7e-05  Score=66.03  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++++++|.+|+|||||+|++..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~   22 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYAN   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999983

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03108 Rab family protein; Provisional

Probab=97.97  E-value=1.7e-05  Score=68.72  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ..++|+++|.+|||||||+|.|...          .......+..|.+.....+.+... -.+.++||||..
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~----------~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~   66 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDK----------RFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE   66 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC----------CCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence            3479999999999999999999831          111111122233332223333221 147799999954

>cd04117 Rab15 Rab15 subfamily

Probab=97.96  E-value=1.8e-05  Score=65.34  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||++.++
T Consensus         2 ki~vvG~~~~GKTsli~~~~   21 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFT   21 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            68999999999999999998

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.96  E-value=4.1e-05  Score=78.60  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=60.4

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH-HccCCCEEEEecCCCcCHHHHH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF-DQQNCPSFGVNSHNKDNVKEFL  121 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~  121 (298)
                      ...+|+++.|+|+....  ++..+...+.+.++|+++++||+|+..........+.+ +..+.+++++|+.+++|++++.
T Consensus        83 ~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~  160 (772)
T PRK09554         83 SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK  160 (772)
T ss_pred             ccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence            35899999999997632  22233223334689999999999997543333333333 2467899999999999999999


Q ss_pred             HHHHHHH
Q 022351          122 KFLQAHV  128 (298)
Q Consensus       122 ~~l~~~i  128 (298)
                      +.+....
T Consensus       161 ~~I~~~~  167 (772)
T PRK09554        161 LAIDRHQ  167 (772)
T ss_pred             HHHHHhh
Confidence            9887654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.96  E-value=2e-05  Score=66.13  Aligned_cols=58  Identities=16%  Similarity=0.243  Sum_probs=37.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ..++|+++|.+|||||||++.+..           +....  ..|.+..+...+.. ....+.++||||...
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~-----------~~~~~--~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~   69 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKL-----------GESVT--TIPTIGFNVETVTY-KNISFTVWDVGGQDK   69 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhc-----------CCCCC--cCCccccceEEEEE-CCEEEEEEECCCChh
Confidence            357999999999999999999962           12211  23332333333322 223588999999643

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=97.94  E-value=1.8e-05  Score=65.94  Aligned_cols=20  Identities=30%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|+|.
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~   20 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLK   20 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999998

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.94  E-value=3.2e-05  Score=74.76  Aligned_cols=92  Identities=15%  Similarity=0.095  Sum_probs=60.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCCCh----hh--
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLASP----TQ--   91 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~----~~--   91 (298)
                      -.-||| .++.+.+...+..+|.+|+|+|+.....       ..-.+...++...+.| +|+++||+|+.+.    +.  
T Consensus        90 iDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~  168 (447)
T PLN00043         90 IDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD  168 (447)
T ss_pred             EECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHH
Confidence            345898 7788999999999999999999987421       1111111122234664 6888999998632    11  


Q ss_pred             --HHHHHHHHHccC-----CCEEEEecCCCcCHH
Q 022351           92 --FKEWITFFDQQN-----CPSFGVNSHNKDNVK  118 (298)
Q Consensus        92 --~~~~~~~~~~~~-----~~vi~iSa~~~~gi~  118 (298)
                        .++..+++++.+     .+++++||.+|+|+.
T Consensus       169 ~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        169 EIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence              233444444444     468999999999874

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.92  E-value=1.1e-05  Score=66.59  Aligned_cols=20  Identities=40%  Similarity=0.576  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~   20 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFL   20 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHH
Confidence            37899999999999999997

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.92  E-value=1.3e-05  Score=80.90  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..++|+++|.+|+|||||+|+|+.
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~   46 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLY   46 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHH
Confidence            4568999999999999999999984

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.91  E-value=2.3e-05  Score=64.72  Aligned_cols=55  Identities=16%  Similarity=0.251  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ++|+++|.+|||||||++++..           +....  ..|.+..+...+.. ..-.+.++||||..
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~-----------~~~~~--~~pt~g~~~~~~~~-~~~~~~l~D~~G~~   55 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKL-----------GEIVT--TIPTIGFNVETVEY-KNISFTVWDVGGQD   55 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc-----------CCCcc--cCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence            3789999999999999999962           11111  22322222222222 22358899999974

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04144 Ras2 Ras2 subfamily

Probab=97.91  E-value=1.5e-05  Score=67.86  Aligned_cols=20  Identities=40%  Similarity=0.546  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|++.
T Consensus         1 ki~ivG~~~vGKTsli~~l~   20 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLC   20 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999998

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04148 RGK RGK subfamily

Probab=97.90  E-value=2.3e-05  Score=68.67  Aligned_cols=20  Identities=50%  Similarity=0.835  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|.+.
T Consensus         2 KI~lvG~~gvGKTsLi~~~~   21 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFT   21 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            78999999999999999997

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.90  E-value=1.4e-05  Score=81.14  Aligned_cols=60  Identities=25%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--c---cCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--A---SHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~---~~~~~~liDTPGi~  211 (298)
                      .+...|+++|.+|+|||||+|+|+..            ....+..+|.|.++..+.+  .   ....+.++||||..
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~------------~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe  306 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKT------------QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE  306 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhc------------cCccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence            45679999999999999999999831            1122344667766543322  1   23468999999963

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.90  E-value=2e-05  Score=65.53  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=18.3

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+++|.+|||||||+|++..
T Consensus         1 i~i~G~~~vGKTsli~~~~~   20 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTT   20 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHh
Confidence            57999999999999999983

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.90  E-value=2e-05  Score=80.73  Aligned_cols=61  Identities=23%  Similarity=0.365  Sum_probs=43.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~  212 (298)
                      .+...|+++|.+|+|||||+|+|+.           .. ...+..+|.|.++..+.+. .+..+.++||||...
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~-----------~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~  349 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRK-----------TN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA  349 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh-----------CC-ccccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence            4567899999999999999999973           11 1233456778777644432 234689999999754

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.89  E-value=1.5e-05  Score=64.85  Aligned_cols=21  Identities=38%  Similarity=0.669  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|++||.+++|||||+++|.+
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            799999999999999999983

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.89  E-value=3.2e-05  Score=68.51  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=45.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~   88 (298)
                      ||| ..+...+...+..+|.+++|+|+..+.......+...+...++|+++++||+|+..
T Consensus        72 PG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~  130 (237)
T cd04168          72 PGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG  130 (237)
T ss_pred             CCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence            677 45667777888999999999999987655444444444346899999999999974

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=3.2e-05  Score=62.49  Aligned_cols=105  Identities=16%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      -.|...+|++.....-.++..++-+|++.|..... +.+  +.+...++   ..+.|+|+|.||||+-++..+  +.-..
T Consensus        73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNee-Sf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~  151 (193)
T KOG0093|consen   73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE-SFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQ  151 (193)
T ss_pred             EEEecccchhhhHHHHHHhhccceEEEEEecCCHH-HHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHH
Confidence            47999999998777888999999999999987532 211  12222222   257999999999999765322  33334


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...++|++++..||+.+.+++.+.+.+...+.+
T Consensus       152 l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  152 LADQLGFEFFETSAKENINVKQVFERLVDIICD  184 (193)
T ss_pred             HHHHhChHHhhhcccccccHHHHHHHHHHHHHH
Confidence            445678899999999999999999888777654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.87  E-value=3.2e-05  Score=69.83  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCChhh-----------------HHHHH
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQ-----------------FKEWI   96 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~-----------------~~~~~   96 (298)
                      ..+..+..+..||+|+.|+|+.++-....+.+...+.. ...|-++|+||+|......                 ..+|.
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            34567788999999999999987555555533322211 5689999999999764421                 11333


Q ss_pred             HHHHcc----------CC----CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           97 TFFDQQ----------NC----PSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        97 ~~~~~~----------~~----~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +.+...          |+    .+|++||++|+|+++|.++|....+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            333211          12    4899999999999999999987654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.87  E-value=3e-05  Score=68.77  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|+|||||+|+|+.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~   21 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLY   21 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.87  E-value=2.3e-05  Score=78.00  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|+++|.+|+|||||+|+|++
T Consensus         5 piV~IiG~~d~GKTSLln~l~~   26 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRG   26 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999984

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.87  E-value=2.1e-05  Score=70.91  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|+|||||+|+|+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~   21 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLY   21 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999974

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.85  E-value=3.1e-05  Score=60.31  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+|+|.+||||||||++|.+
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~   21 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCG   21 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999999994

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04129 Rho2 Rho2 subfamily

Probab=97.85  E-value=2.7e-05  Score=66.10  Aligned_cols=90  Identities=13%  Similarity=0.008  Sum_probs=57.6

Q ss_pred             HhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh------------hHHHHHHHHHccCC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT------------QFKEWITFFDQQNC  104 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~------------~~~~~~~~~~~~~~  104 (298)
                      ..+..+|.+++|.|...+.+...  ..+...+  ...+.|+++|.||+|+.+..            ..+......+..+.
T Consensus        68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (187)
T cd04129          68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGA  147 (187)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCC
Confidence            35789999999999875432211  1121111  12468999999999985421            01111122223443


Q ss_pred             -CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          105 -PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 -~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                       +++.+||+++.|++++++.+.+.+..
T Consensus       148 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         148 KKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             cEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence             68999999999999999999876544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.84  E-value=3.8e-05  Score=73.11  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccc--------eeecCCCCeeeeeEEEEEcc-CCCEEEEeCCC
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRH--------ATVSPQPGETKDIYSLKIAS-HPNIYVLDTPG  209 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~--------~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPG  209 (298)
                      .++.++++++|.+++|||||+++|++.-.  .  .|+.+.        .......|+|.+...+.+.. ..++.++||||
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~--~--~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpG   84 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA--K--EGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPG   84 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHH--H--hhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCc
Confidence            46678999999999999999999974210  0  011100        01112368888877655533 33588999999


Q ss_pred             CC
Q 022351          210 IL  211 (298)
Q Consensus       210 i~  211 (298)
                      ..
T Consensus        85 h~   86 (394)
T TIGR00485        85 HA   86 (394)
T ss_pred             hH
Confidence            64

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=0.00016  Score=66.34  Aligned_cols=103  Identities=17%  Similarity=0.236  Sum_probs=71.1

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH--------
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF--------   98 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~--------   98 (298)
                      .-||| +.-++.+.....-.|+.+.|+|+..+......+-.-+-...-++.++|+||+|++++......++.        
T Consensus        76 DCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   76 DCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             eCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            34888 677888888888889999999998765544433111111245788999999999987543322222        


Q ss_pred             HHcc----CCCEEEEecCCC----cCHHHHHHHHHHHHHh
Q 022351           99 FDQQ----NCPSFGVNSHNK----DNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~----~~~vi~iSa~~~----~gi~~L~~~l~~~i~~  130 (298)
                      ++..    +.+++.+|+..|    +++.+|.+.+.+.+-+
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            2222    248999999999    7888888888877655

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.83  E-value=3.3e-05  Score=64.27  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||++.+..
T Consensus         3 ki~iiG~~~~GKTsl~~~~~~   23 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSK   23 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            799999999999999999983

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.83  E-value=8.1e-05  Score=61.26  Aligned_cols=106  Identities=10%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCCh---hhHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASP---TQFKEWI   96 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~---~~~~~~~   96 (298)
                      .-|..|.......-+..+.+.+|.+|+|+|..++..-.+  .++...+.   ..+.|++++.||.|+.+.   +.+....
T Consensus        63 ~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~  142 (185)
T KOG0073|consen   63 NIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKAL  142 (185)
T ss_pred             EEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhh
Confidence            578999987777778889999999999999987643222  22333322   267999999999999743   2332211


Q ss_pred             ---HHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           97 ---TFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        97 ---~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                         +.++...++++.+|+.+|+++.+=++++...+.+
T Consensus       143 ~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  143 DLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             CHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence               1223445688999999999888878887765543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.83  E-value=4.4e-05  Score=65.96  Aligned_cols=56  Identities=23%  Similarity=0.341  Sum_probs=34.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc---cCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA---SHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~---~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|||||||++.|..           ++...+  .+.++.....+...   ....+.|+||||-..
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~-----------~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~   60 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTT-----------GKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK   60 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc-----------CCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence            589999999999999999983           111111  12222222222221   234588999999654

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.82  E-value=5e-05  Score=64.28  Aligned_cols=56  Identities=18%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      ..++|+++|.+|||||||++.+..           +......+..|.  +...+.. ..-.+.++||||-
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~-----------~~~~~~~pt~g~--~~~~~~~-~~~~~~i~D~~Gq   71 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKL-----------GEIVTTIPTIGF--NVETVEY-KNISFTVWDVGGQ   71 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHcc-----------CCCccccCCcce--eEEEEEE-CCEEEEEEECCCC
Confidence            457999999999999999999972           122222232332  2222222 2235889999994

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.80  E-value=4.4e-05  Score=70.12  Aligned_cols=89  Identities=20%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc---HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH-
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF---DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF-   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~-   99 (298)
                      -.-||| +...+.|.--...||+.|.++|||.+...+.   ..+..++  .-+.+++.+||+||++..  ..+++...| 
T Consensus        91 ADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~  167 (431)
T COG2895          91 ADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVFEAIVADYL  167 (431)
T ss_pred             ecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHHHHHHHHHH
Confidence            444999 7788888888999999999999998765443   3455542  456788899999999643  333333333 


Q ss_pred             ---HccCC---CEEEEecCCCcCH
Q 022351          100 ---DQQNC---PSFGVNSHNKDNV  117 (298)
Q Consensus       100 ---~~~~~---~vi~iSa~~~~gi  117 (298)
                         .+.+.   .++++||..|.++
T Consensus       168 ~fa~~L~~~~~~~IPiSAl~GDNV  191 (431)
T COG2895         168 AFAAQLGLKDVRFIPISALLGDNV  191 (431)
T ss_pred             HHHHHcCCCcceEEechhccCCcc
Confidence               34444   5799999988664

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=97.80  E-value=3.8e-05  Score=69.78  Aligned_cols=61  Identities=23%  Similarity=0.287  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+...|++||++|+|||||||+|.......            -..-+-|.++.  ..+...+..+.+.||-||..
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p------------~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis  238 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP------------NDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS  238 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCc------------cchhheeccchhhhccCCCCcEEEEeechhhhh
Confidence            344689999999999999999998432211            11112233333  12344555688899999975

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.80  E-value=8e-05  Score=65.37  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=65.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhh----------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQ----------   91 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~----------   91 (298)
                      -|..+...+........+..+|++|+|+|...+.+..+.  .+...+  ...+.|++||.||+||.....          
T Consensus        53 iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~  132 (222)
T cd04173          53 MWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL  132 (222)
T ss_pred             EEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccC
Confidence            477766565555555679999999999999876332221  121111  124789999999999964210          


Q ss_pred             ----HHHHHHHHHccCC-CEEEEecCCCc-CHHHHHHHHHHH
Q 022351           92 ----FKEWITFFDQQNC-PSFGVNSHNKD-NVKEFLKFLQAH  127 (298)
Q Consensus        92 ----~~~~~~~~~~~~~-~vi~iSa~~~~-gi~~L~~~l~~~  127 (298)
                          .++-...-+..+. .++.+||+++. |+++++......
T Consensus       133 ~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         133 IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             CccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence                0111112223453 78999999988 499988876653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.80  E-value=0.00014  Score=63.06  Aligned_cols=121  Identities=13%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|...+..+........+..++.+++|+|.....+...     ..+...  ..+.|++++.||+|+.+...........+
T Consensus        62 ~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~  139 (215)
T PTZ00132         62 VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQITFHR  139 (215)
T ss_pred             EEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHHHHHH
Confidence            45544434444444566789999999999875432211     111112  24688999999999865432223333444


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCC-----CchHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPN-----VGKSALA  159 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~n-----vGKSsli  159 (298)
                      ..+..++.+|++++.|+++++.+|.+.+..           ...+.++..|-     +|-.-..
T Consensus       140 ~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~-----------~p~~~~ldEp~~~~~~~~ld~~~  192 (215)
T PTZ00132        140 KKNLQYYDISAKSNYNFEKPFLWLARRLTN-----------DPNLVFVGAPALAPEEIQIDPEL  192 (215)
T ss_pred             HcCCEEEEEeCCCCCCHHHHHHHHHHHHhh-----------cccceecCCcccCCCccccCHHH
Confidence            456778999999999999988888766543           13567778777     6665443

>cd01882 BMS1 Bms1

Probab=97.79  E-value=4.9e-05  Score=66.78  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=38.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      .++..|+++|.||+|||||+|+|.+.          .....++...|+. .   +....+..+.++||||.
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~----------~~~~~~~~~~g~i-~---i~~~~~~~i~~vDtPg~   93 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKN----------YTKQNISDIKGPI-T---VVTGKKRRLTFIECPND   93 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh----------cccCccccccccE-E---EEecCCceEEEEeCCch
Confidence            56778999999999999999999842          1222333444531 1   11123456899999985

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=3.8e-05  Score=64.34  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=75.9

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      ..|..|...+....+..+..+.+.+|+|+|+.+...  ..-.++...+..   .+.|+++..||.|+...-...+..+.+
T Consensus        64 ~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L  143 (181)
T KOG0070|consen   64 TVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKL  143 (181)
T ss_pred             EEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHh
Confidence            589999998888888899999999999999986422  112234444332   478999999999986443222333322


Q ss_pred             -----HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 -----DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 -----~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                           ....+.+...+|.+|+|+.+-++++.+.+..
T Consensus       144 ~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  144 GLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             hhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence                 2334467788999999999999999876643

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.78  E-value=3.7e-05  Score=78.34  Aligned_cols=71  Identities=18%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeec------CCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVS------PQPGETKDIYSLKI-ASHPNIYVLDTPGILPP  213 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~------~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~  213 (298)
                      -.+|+++|.+|+|||||+|+|+.. +.+..... ......+.      ...|+|.+.....+ ..+.++.++||||....
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~-~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGE-VHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCcccccc-ccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            348999999999999999999742 21110000 00000111      24677877654332 23447999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04126 Rab20 Rab20 subfamily

Probab=97.78  E-value=4.4e-05  Score=66.91  Aligned_cols=21  Identities=43%  Similarity=0.594  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|.++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~   21 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYM   21 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            378999999999999999998

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01892 Miro2 Miro2 subfamily

Probab=97.78  E-value=7.4e-05  Score=62.36  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++.++++++|.+|||||||+|+++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~   25 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFL   25 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHh
Confidence            356799999999999999999998

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.77  E-value=6.3e-05  Score=63.24  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.+|||||||++.+.
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~   22 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYT   22 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.77  E-value=6.4e-05  Score=62.73  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++++++|.+|+|||||++++..
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~   22 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTT   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999973

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.77  E-value=4.9e-05  Score=68.67  Aligned_cols=83  Identities=14%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHHHccCC-
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFFDQQNC-  104 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~~~~~-  104 (298)
                      |||. ++...+...+..+|.+++|+|+..........+...+...++|+++++||+|+...+   ..+...+.+....+ 
T Consensus        72 PG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~  150 (270)
T cd01886          72 PGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVP  150 (270)
T ss_pred             CCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceE
Confidence            7874 566778889999999999999988766655555554445689999999999997432   12333333322111 


Q ss_pred             CEEEEecC
Q 022351          105 PSFGVNSH  112 (298)
Q Consensus       105 ~vi~iSa~  112 (298)
                      ..+++|+.
T Consensus       151 ~~~Pisa~  158 (270)
T cd01886         151 LQLPIGEE  158 (270)
T ss_pred             EEeccccC
Confidence            34666664

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.77  E-value=6e-05  Score=62.35  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             HhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCC--hhhH-HHHHHHH-Hcc-CCCEEEEe
Q 022351           41 DRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLAS--PTQF-KEWITFF-DQQ-NCPSFGVN  110 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~--~~~~-~~~~~~~-~~~-~~~vi~iS  110 (298)
                      .+...+|.+++|+|..++.+-.+ .    .+.......+.|+++|.||+||..  ...+ .+..+.+ ++. +..++.+|
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  140 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC  140 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence            34578999999999987643332 1    122211114579999999999842  1111 1122222 222 46899999


Q ss_pred             cCCCcCHHHHHHHHHH
Q 022351          111 SHNKDNVKEFLKFLQA  126 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~  126 (298)
                      |+++.|+++++..+.+
T Consensus       141 Ak~~~~i~~~f~~~~~  156 (158)
T cd04103         141 ATYGLNVERVFQEAAQ  156 (158)
T ss_pred             cCCCCCHHHHHHHHHh
Confidence            9999999999887753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.76  E-value=3.9e-05  Score=67.03  Aligned_cols=68  Identities=24%  Similarity=0.327  Sum_probs=43.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh-cchhhhh----------cCCc--------cceeecCCCCeeeeeEEEEE-ccCCCEE
Q 022351          144 TVMLLGIPNVGKSALANSLHQI-GRITAAE----------KGKL--------RHATVSPQPGETKDIYSLKI-ASHPNIY  203 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~----------~~~~--------~~~~~~~~pg~T~~~~~~~~-~~~~~~~  203 (298)
                      +|+++|.+++|||||+.+|+.. +.+....          .|..        .........|+|++.....+ ..+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4799999999999999999742 3222110          1110        01122245688988875544 3445789


Q ss_pred             EEeCCCCC
Q 022351          204 VLDTPGIL  211 (298)
Q Consensus       204 liDTPGi~  211 (298)
                      ++||||..
T Consensus        81 liDtpG~~   88 (219)
T cd01883          81 ILDAPGHR   88 (219)
T ss_pred             EEECCChH
Confidence            99999964

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.76  E-value=5e-05  Score=63.05  Aligned_cols=20  Identities=35%  Similarity=0.725  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+++|.+|||||||++.+.+
T Consensus         2 i~ivG~~~vGKTsli~~~~~   21 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSS   21 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999983

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.75  E-value=2.1e-05  Score=62.15  Aligned_cols=18  Identities=39%  Similarity=0.565  Sum_probs=16.5

Q ss_pred             EEcCCCCchHHHHHHHhh
Q 022351          147 LLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       147 vvG~~nvGKSsliN~L~~  164 (298)
                      ++|.+|+|||||+|+|.+
T Consensus         1 iiG~~~~GKStl~~~l~~   18 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLG   18 (157)
T ss_pred             CCCcCCCcHHHHHHHHHh
Confidence            589999999999999984

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04169 RF3 RF3 subfamily

Probab=97.75  E-value=6.1e-05  Score=67.97  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|+|||||+|+|+.
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~   24 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLL   24 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999984

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.75  E-value=6.2e-05  Score=63.05  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||++.+.
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~   23 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFI   23 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            589999999999999999998

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.73  E-value=4.5e-05  Score=65.34  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|||||||+|+++.
T Consensus         1 kv~vvG~~~vGKTsll~~~~~   21 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLY   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999983

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.72  E-value=1.9e-05  Score=67.13  Aligned_cols=70  Identities=23%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcc-hhhhh--cCC---ccceeecCCCCeeeeeEEEEEc---cCCCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGR-ITAAE--KGK---LRHATVSPQPGETKDIYSLKIA---SHPNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~-~~~~~--~~~---~~~~~~~~~pg~T~~~~~~~~~---~~~~~~liDTPGi~  211 (298)
                      ..+|+++|..++|||||+++|+.... .....  .+.   ..........|.|.+.......   ....+.++||||..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            46899999999999999999984321 10000  000   0000111223445554443332   34469999999963

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.71  E-value=8.7e-05  Score=60.83  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.++||||||++.+.+
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~   21 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLIN   21 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999984

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK00007 elongation factor G; Reviewed

Probab=97.71  E-value=5.3e-05  Score=77.20  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=42.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh-hcchhhhh--cCCccce---eecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ-IGRITAAE--KGKLRHA---TVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~--~~~~~~~---~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      -.+|+++|.+|+|||||+|+|+. ++.+....  .++....   ..-...|+|.+.....+ +.+..+.++||||...
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            45899999999999999999974 22211000  0000000   00135677877654332 2345799999999754

>PRK12739 elongation factor G; Reviewed

Probab=97.70  E-value=0.00011  Score=75.04  Aligned_cols=62  Identities=19%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|||. ++...+...+..+|++++|+|+..+.......+..++...++|+|+++||+|+...
T Consensus        79 DTPG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         79 DTPGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             cCCCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            348885 46677889999999999999999887766666655544568999999999999753

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.69  E-value=0.00012  Score=63.51  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ...++++++|.+|||||||+|.++
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~   30 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHL   30 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHH
Confidence            346799999999999999998765

>cd04134 Rho3 Rho3 subfamily

Probab=97.68  E-value=8.2e-05  Score=63.26  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||++.+.
T Consensus         2 kivivG~~~vGKTsli~~~~   21 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFT   21 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999998

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.67  E-value=7e-05  Score=74.77  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=38.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI  210 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi  210 (298)
                      .|+++|.+|+|||||+|+|.+...         ........+|+|.++....+. .+..+.++||||.
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~---------d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh   60 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAA---------DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH   60 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccC---------cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence            689999999999999999984210         011112346778776532221 2246889999994

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.66  E-value=9.6e-05  Score=62.06  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.+|||||||+.++.
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~   22 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYT   22 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999987

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04121 Rab40 Rab40 subfamily

Probab=97.66  E-value=0.00012  Score=62.49  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..++|+++|.+|||||||++++.
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~   27 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQ   27 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Confidence            35799999999999999999998

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.65  E-value=9.5e-05  Score=63.94  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|+|.+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~   27 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVG   27 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhc
Confidence            7999999999999999999983

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.64  E-value=9.7e-05  Score=71.07  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=44.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      .+.++++++|.+++|||||+++|+.. +.+...          +.|+.        .........|+|.+.....+. ..
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            56789999999999999999999842 222110          11100        000112345888888754443 23


Q ss_pred             CCEEEEeCCCC
Q 022351          200 PNIYVLDTPGI  210 (298)
Q Consensus       200 ~~~~liDTPGi  210 (298)
                      ..+.|+||||.
T Consensus        85 ~~i~iiDtpGh   95 (426)
T TIGR00483        85 YEVTIVDCPGH   95 (426)
T ss_pred             eEEEEEECCCH
Confidence            36889999994

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PLN03126 Elongation factor Tu; Provisional

Probab=97.62  E-value=0.00011  Score=71.53  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=43.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCc---cceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKL---RHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~---~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi  210 (298)
                      .+.++++++|.+++|||||+|+|+.. +.+......+.   .........|.|.+.....+ ..+..+.++||||.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh  154 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH  154 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence            56789999999999999999999842 11110000000   00112234577877654333 23446899999995

>PRK12739 elongation factor G; Reviewed

Probab=97.62  E-value=7.5e-05  Score=76.10  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=43.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh-hcchhhhh--cCCcc---ceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ-IGRITAAE--KGKLR---HATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~--~~~~~---~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      ...+|+++|.+|+|||||+|+|+. ++.+....  .++..   ....-...|+|.+.....+ ..+.++.++||||...
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            345899999999999999999974 22211000  00000   0001135677777654333 3445789999999754

>cd04167 Snu114p Snu114p subfamily

Probab=97.62  E-value=9e-05  Score=64.34  Aligned_cols=58  Identities=24%  Similarity=0.252  Sum_probs=42.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      ||| .++...+...+..+|.+++|+|+..+.......+...+...++|+++|+||+|++
T Consensus        79 pG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          79 PGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             CCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            676 4566667788899999999999987655443333332222468999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04128 Spg1 Spg1p

Probab=97.62  E-value=0.00015  Score=61.41  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++++++|.+|||||||++.++.
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~   22 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVE   22 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999983

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04131 Rnd Rnd subfamily

Probab=97.62  E-value=0.00016  Score=61.15  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||++.+..
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~   23 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAK   23 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999983

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04120 Rab12 Rab12 subfamily

Probab=97.62  E-value=0.00014  Score=62.94  Aligned_cols=20  Identities=30%  Similarity=0.612  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      .|+++|.+|||||||++.+.
T Consensus         2 ~vvvlG~~gVGKTSli~r~~   21 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFT   21 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            68999999999999999998

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.00019  Score=71.37  Aligned_cols=110  Identities=17%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             cccCC--CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC------Chhh
Q 022351           20 SQKKG--GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA------SPTQ   91 (298)
Q Consensus        20 ~~~~~--~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~------~~~~   91 (298)
                      |..+|  +-.-||| ..+...=.+-...||+.|+|+|..+++...-.+-.++|+..+.|+||.+||+|-+      +...
T Consensus       537 ~kvPg~lvIdtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~  615 (1064)
T KOG1144|consen  537 LKVPGLLVIDTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAP  615 (1064)
T ss_pred             cCCCeeEEecCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCch
Confidence            44455  3455787 5566555566889999999999998877666555566666789999999999964      1111


Q ss_pred             ------------HHHH-------HHHHHccC---------------CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           92 ------------FKEW-------ITFFDQQN---------------CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        92 ------------~~~~-------~~~~~~~~---------------~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                                  ..++       +..|.+.|               +.++++||.+|+|+.+|+-+|.++.+.
T Consensus       616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence                        1111       11121222               146889999999999999999877654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.61  E-value=0.00023  Score=70.24  Aligned_cols=59  Identities=19%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~   88 (298)
                      ||| ..+...+...+..+|.+|+|+|+..........+.......+.|+++++||+|+..
T Consensus        87 PG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         87 PGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG  145 (526)
T ss_pred             CCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence            787 45666777888999999999999876655444454444446899999999999864

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.61  E-value=0.00012  Score=59.94  Aligned_cols=94  Identities=24%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCE
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPS  106 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~v  106 (298)
                      +........+.++|.+|+|.|..++.+-..     +.+.... ..+.|+++|.||+|+.+...  .++..+..++.+.++
T Consensus        60 ~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~  138 (162)
T PF00071_consen   60 RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPY  138 (162)
T ss_dssp             GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-cccccceeeeccccccccccchhhHHHHHHHHhCCEE
Confidence            333333456899999999999876422211     1122221 13589999999999875321  233333444556789


Q ss_pred             EEEecCCCcCHHHHHHHHHHHH
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.+|++++.++.+++..+.+.+
T Consensus       139 ~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  139 FEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             EEEBTTTTTTHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999888876554

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.60  E-value=0.00013  Score=72.80  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..|+++|.+|+|||||+|+|.+
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~   28 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRG   28 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            445799999999999999999974

>cd01882 BMS1 Bms1

Probab=97.60  E-value=0.00019  Score=63.01  Aligned_cols=85  Identities=20%  Similarity=0.168  Sum_probs=55.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEE-EEEecCCCCChh-hHHHHHHH----HH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRI-LVLNKMDLASPT-QFKEWITF----FD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~I-iVlNK~DL~~~~-~~~~~~~~----~~  100 (298)
                      .-||+.    ..+...++.+|++++|+|+..+....+..+...+...+.|.+ +|+||+|+.+.. ..+...+.    +.
T Consensus        89 DtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~  164 (225)
T cd01882          89 ECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW  164 (225)
T ss_pred             eCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH
Confidence            446765    344455688999999999988776666566555444567754 599999997432 22222221    21


Q ss_pred             ---ccCCCEEEEecCCCc
Q 022351          101 ---QQNCPSFGVNSHNKD  115 (298)
Q Consensus       101 ---~~~~~vi~iSa~~~~  115 (298)
                         -.+.+++++||++.-
T Consensus       165 ~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         165 TEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HhhCCCCcEEEEeeccCC
Confidence               123489999998763

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.00012  Score=61.64  Aligned_cols=104  Identities=16%  Similarity=0.085  Sum_probs=73.9

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--c---ccHHHhccCCCCCCcEEEEEecCCCCChhhH--HHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--S---EFDQLRNHHPFSSSRRILVLNKMDLASPTQF--KEWIT   97 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~---~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~--~~~~~   97 (298)
                      .-|..+.|+.+....+++.+.+.-+|+|.|...-.+  .   +..++.... ..+.-++++.||+||.....+  ++-..
T Consensus        58 qiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGea  136 (216)
T KOG0098|consen   58 QIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEA  136 (216)
T ss_pred             EEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHH
Confidence            479999999999999999999999999999864211  1   112222221 257788999999999754322  22333


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +.++.|+.++.+||++++++++.+......+-
T Consensus       137 FA~ehgLifmETSakt~~~VEEaF~nta~~Iy  168 (216)
T KOG0098|consen  137 FAREHGLIFMETSAKTAENVEEAFINTAKEIY  168 (216)
T ss_pred             HHHHcCceeehhhhhhhhhHHHHHHHHHHHHH
Confidence            34467888889999999999987766655443

>PRK09866 hypothetical protein; Provisional

Probab=97.59  E-value=0.0002  Score=71.10  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+.++++|.+|+|||||+|+|++
T Consensus        68 ~~~~valvG~sgaGKSTLiNaL~G   91 (741)
T PRK09866         68 LEMVLAIVGTMKAGKSTTINAIVG   91 (741)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            347999999999999999999984

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.58  E-value=0.00015  Score=70.72  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++++++|.+++|||||+++|+.
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~   49 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLH   49 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHH
Confidence            5668999999999999999999974

>smart00053 DYNc Dynamin, GTPase

Probab=97.58  E-value=0.00037  Score=61.83  Aligned_cols=78  Identities=19%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhh-hccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC
Q 022351          121 LKFLQAHVRNLR-KSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH  199 (298)
Q Consensus       121 ~~~l~~~i~~~~-~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~  199 (298)
                      +..+.+.+.+++ .......-....++++|.+|+||||++|+|.            +..........+|+.+..+.+...
T Consensus         4 ~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~------------g~~~~~~~~g~~t~~p~~i~l~~~   71 (240)
T smart00053        4 LIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFV------------GRDFLPRGSGIVTRRPLILQLINS   71 (240)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHh------------CCCccccCCCcccccceEEEccCC


Q ss_pred             -----------------------------------------------------CCEEEEeCCCC
Q 022351          200 -----------------------------------------------------PNIYVLDTPGI  210 (298)
Q Consensus       200 -----------------------------------------------------~~~~liDTPGi  210 (298)
                                                                           ++++||||||+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl  135 (240)
T smart00053       72 STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGI  135 (240)
T ss_pred             CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCc

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.58  E-value=5.6e-05  Score=74.88  Aligned_cols=109  Identities=16%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             eecccCCCccchhhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHH
Q 022351           18 AVSQKKGGGWYGPHMAAATRAIADRM--PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEW   95 (298)
Q Consensus        18 ~~~~~~~~~wfpghm~~~~~~i~~~l--~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~   95 (298)
                      ...+++|+--+..+- ...+-.++.+  .+.|+|+.|+||...  .++..+--.+.+.++|.++++|++|.+....++--
T Consensus        53 ~ivDLPG~YSL~~~S-~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID  129 (653)
T COG0370          53 EIVDLPGTYSLTAYS-EDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID  129 (653)
T ss_pred             EEEeCCCcCCCCCCC-chHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc
Confidence            344556653333331 1222233332  567999999999853  33333322222478999999999998766543322


Q ss_pred             HHHHH-ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           96 ITFFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        96 ~~~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.++ ..|.++++++|++|+|++++++.+.+..+
T Consensus       130 ~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         130 IEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence            23332 46899999999999999999998875443

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.56  E-value=0.00017  Score=62.35  Aligned_cols=21  Identities=38%  Similarity=0.601  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.++||||||++.+.
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~   21 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLIC   21 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999998

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.56  E-value=0.0005  Score=60.75  Aligned_cols=49  Identities=18%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             CcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           75 SRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        75 k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +|.++|+||+|+.+.++.+.+.     ...+++++||+++.|++++.+.+.+.+
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~~~-----~~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDLLA-----RQPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCCCHHHHHHHh-----cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            5889999999998776555321     234689999999999999999887654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.55  E-value=0.00013  Score=64.06  Aligned_cols=58  Identities=21%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      ||| ..+...+...+..+|.+++|+|+..+.......+.......+.|+++++||+|+.
T Consensus        81 PG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            677 5677888899999999999999998766555544443333578999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.55  E-value=0.00015  Score=72.83  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=38.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGI  210 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi  210 (298)
                      .|+++|.+++|||||+|+|.++..         .+.......|.|.+.....+  .++..+.++||||.
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~---------dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh   61 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNA---------DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH   61 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---------ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence            579999999999999999984211         11122233567776653222  23445789999996

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.55  E-value=0.00013  Score=64.97  Aligned_cols=20  Identities=30%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|.+|||||||+|.++
T Consensus         2 KVvvlG~~gvGKTSLi~r~~   21 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFL   21 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            68999999999999999998

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0002  Score=57.48  Aligned_cols=104  Identities=14%  Similarity=0.051  Sum_probs=76.1

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--cccHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS--SEFDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~--~~~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      ..|..|...+....++.+......+|+|+|+.+...  ..-.++...+..   .+.+++|..||-|+...-..+++.+++
T Consensus        64 NvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~l  143 (180)
T KOG0071|consen   64 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKL  143 (180)
T ss_pred             eeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHh
Confidence            589999999999999999999999999999865311  111233333322   578899999999997665556666665


Q ss_pred             H-----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 D-----QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~-----~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +     ...+.+.+.++.++.|+.+=+.++.+..
T Consensus       144 eLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  144 ELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             ccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            3     2234577889999999988888876543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.52  E-value=0.00013  Score=69.79  Aligned_cols=68  Identities=24%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh-hcchhhhh----------cCCc----------cceeecCCCCeeeeeEEEEE-ccCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ-IGRITAAE----------KGKL----------RHATVSPQPGETKDIYSLKI-ASHP  200 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~----------~~~~----------~~~~~~~~pg~T~~~~~~~~-~~~~  200 (298)
                      ++++++|.+++|||||+++|+. ++.+....          .|..          ........-|.|.+.....+ ..+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            3789999999999999999974 22222110          1110          00001123367777664333 3344


Q ss_pred             CEEEEeCCCC
Q 022351          201 NIYVLDTPGI  210 (298)
Q Consensus       201 ~~~liDTPGi  210 (298)
                      ++.++||||.
T Consensus        81 ~~~liDtPGh   90 (406)
T TIGR02034        81 KFIVADTPGH   90 (406)
T ss_pred             EEEEEeCCCH
Confidence            6899999995

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00503 prfC peptide chain release factor 3

Probab=97.49  E-value=0.00044  Score=68.26  Aligned_cols=60  Identities=18%  Similarity=0.110  Sum_probs=45.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      .-||| ..+...+...+..+|.+|+|+|+..........+.+.+...++|+++++||+|+.
T Consensus        86 DTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~  145 (527)
T TIGR00503        86 DTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD  145 (527)
T ss_pred             ECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence            34788 5667778888999999999999987655444444444444679999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04129 Rho2 Rho2 subfamily

Probab=97.49  E-value=0.00022  Score=60.45  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+++++|.+|+|||||+|.+.
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~   22 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFT   22 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999997

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04167 Snu114p Snu114p subfamily

Probab=97.46  E-value=0.00011  Score=63.71  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|.+|+|||||+++|+.
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~   22 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIE   22 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999984

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12740 elongation factor G; Reviewed

Probab=97.46  E-value=0.00024  Score=72.26  Aligned_cols=60  Identities=20%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~   88 (298)
                      -|||. ++...+...+..+|++++|+|+..+.......+...+...++|+++|+||+|+..
T Consensus        67 tPG~~-~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         67 TPGHV-DFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             CCCcH-HHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            37884 4556677788899999999999876654444443333346799999999999863

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00043  Score=65.02  Aligned_cols=91  Identities=21%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-------CCcccH---HHhccCCCCCCcEEEEEecCCCCCh--hhHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFD---QLRNHHPFSSSRRILVLNKMDLASP--TQFK   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-------~~~~~~---~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~   93 (298)
                      -.-||| ..+.+.+..-..+||+.++|+|++.+       ...+..   .|...  ..-..+|+++||+|+.+-  +..+
T Consensus        90 iDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~wde~rf~  166 (428)
T COG5256          90 IDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVSWDEERFE  166 (428)
T ss_pred             eeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccccccCHHHHH
Confidence            455997 78999999999999999999999976       222222   23333  245678999999999853  2222


Q ss_pred             HHHHH---H-HccC-----CCEEEEecCCCcCHHH
Q 022351           94 EWITF---F-DQQN-----CPSFGVNSHNKDNVKE  119 (298)
Q Consensus        94 ~~~~~---~-~~~~-----~~vi~iSa~~~~gi~~  119 (298)
                      +....   + +..|     .+++++|+.+|.++.+
T Consensus       167 ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         167 EIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            22222   2 2334     3589999999987654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.42  E-value=0.00011  Score=62.36  Aligned_cols=58  Identities=26%  Similarity=0.339  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~  213 (298)
                      .++++|.+|+||++|+..|..         +....+-+|-.|..+...   .......+.|||+||-...
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~---------~~~~~T~tS~e~n~~~~~---~~~~~~~~~lvD~PGH~rl   62 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVN---------GKTVPTVTSMENNIAYNV---NNSKGKKLRLVDIPGHPRL   62 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHH---------SS---B---SSEEEECCG---SSTCGTCECEEEETT-HCC
T ss_pred             eEEEEcCCCCCHHHHHHHHhc---------CCcCCeeccccCCceEEe---ecCCCCEEEEEECCCcHHH
Confidence            789999999999999999983         211222222222221110   0123446999999997553

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=97.41  E-value=0.00013  Score=70.31  Aligned_cols=140  Identities=16%  Similarity=0.236  Sum_probs=84.1

Q ss_pred             CCcEEEEEecCCCCChhh----HHHHHHHHHccC-----CCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceE
Q 022351           74 SSRRILVLNKMDLASPTQ----FKEWITFFDQQN-----CPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVT  144 (298)
Q Consensus        74 ~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~-----~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~  144 (298)
                      ....+.+.+++|......    ..-|.-...+.+     ..+...+++...|..+++......           ......
T Consensus       243 ~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~-----------ag~~~~  311 (572)
T KOG1249|consen  243 APKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGD-----------AGKAGP  311 (572)
T ss_pred             ccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhc-----------cccccc
Confidence            456788899999865421    111111000000     123455677777777766654422           245567


Q ss_pred             EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCC----CCChh
Q 022351          145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILPPE----IHDVE  219 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~----~~~~~  219 (298)
                      ++.||.++.||+++||+|-..      ..+...+...++.||||....... +. ...-.++||||+..++    +-..|
T Consensus       312 v~~vg~t~a~~e~~~~~~~~~------~~a~~~~~~e~~vPgtTLg~~ri~~i~-~~~~w~YDTPG~~~~~q~~~llt~e  384 (572)
T KOG1249|consen  312 VAAVGRTFAGSEELINAMAKE------LHADVEALAEEPVPGTTLGIRRIEGIF-KRGAWLYDTPGVLNPNQILSLLTSE  384 (572)
T ss_pred             hHHhhhhhhccchhhhhhhhh------hccchhccccCCCCcccccceeeeccc-cccceeecCCCccChhhhhhhccHH
Confidence            899999999999999999631      112345566789999997766432 21 1246899999998764    23344


Q ss_pred             hhhhhhhhcccc
Q 022351          220 VCSKLALTGAIG  231 (298)
Q Consensus       220 ~~~~la~~~~i~  231 (298)
                      +...++....++
T Consensus       385 El~~v~p~~~lr  396 (572)
T KOG1249|consen  385 ELLNVTPRRVLR  396 (572)
T ss_pred             HhhhcCcccccc
Confidence            444444444333

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.41  E-value=0.00035  Score=59.31  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.++||||||++.+..
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~   27 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAK   27 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999983

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=97.40  E-value=0.00034  Score=59.07  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++++|.++||||||++.+.
T Consensus         2 ~kivv~G~~~vGKTsli~~~~   22 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYT   22 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHh
Confidence            479999999999999999998

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.00053  Score=61.23  Aligned_cols=66  Identities=15%  Similarity=0.238  Sum_probs=43.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC---CEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP---NIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~---~~~liDTPGi~~~  213 (298)
                      +-.++|+.||.+|.|||||+++|+++.-        .........|++-...+.+.+..+.   +++|+||.|+.+.
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f--------~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQ  108 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKF--------ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQ  108 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhcccc--------CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccc
Confidence            4568999999999999999999996432        1122333455554443333322111   4889999999874

>cd04169 RF3 RF3 subfamily

Probab=97.36  E-value=0.0005  Score=62.05  Aligned_cols=61  Identities=18%  Similarity=0.116  Sum_probs=44.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      -||| .++...+...+..+|.+++|+|+..+.......+..+....++|+++++||+|+...
T Consensus        78 TPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          78 TPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR  138 (267)
T ss_pred             CCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence            3676 456666777889999999999998765544444444433457999999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=97.34  E-value=0.00057  Score=56.18  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCC-CCeeeeeEEEEEccCC-CEEEEeCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQ-PGETKDIYSLKIASHP-NIYVLDTPG  209 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~-pg~T~~~~~~~~~~~~-~~~liDTPG  209 (298)
                      ++|.++|.+|||||||+-+..           ....-...+. -|+--.+..+.+...+ ++.|+||.|
T Consensus        12 ~KiLlIGeSGVGKSSLllrFv-----------~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG   69 (209)
T KOG0080|consen   12 FKILLIGESGVGKSSLLLRFV-----------SNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG   69 (209)
T ss_pred             EEEEEEccCCccHHHHHHHHH-----------hcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc

>cd01875 RhoG RhoG subfamily

Probab=97.34  E-value=0.00043  Score=58.97  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++++++|.+|||||||++.+.
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~   24 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYT   24 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999997

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PRK13351 elongation factor G; Reviewed

Probab=97.34  E-value=0.00071  Score=69.02  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=45.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      ||| .++...+...+..+|.+++|+|+..+.......+...+...++|+++++||+|+...
T Consensus        81 PG~-~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         81 PGH-IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             CCc-HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence            677 456677788899999999999998776554444444333467999999999998753

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.32  E-value=0.00047  Score=57.99  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi  210 (298)
                      .+..+|+++|.+|+||||+++.|..           +....+.|.-|.  ++..+... +..+.++|.+|=
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~-----------~~~~~~~pT~g~--~~~~i~~~-~~~~~~~d~gG~   68 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN-----------GEISETIPTIGF--NIEEIKYK-GYSLTIWDLGGQ   68 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS-----------SSEEEEEEESSE--EEEEEEET-TEEEEEEEESSS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh-----------ccccccCccccc--ccceeeeC-cEEEEEEecccc
Confidence            5678999999999999999999972           222333332232  22333332 335889999994

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.32  E-value=0.002  Score=55.19  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=57.8

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---------HHHHHH----HH----HccC--
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---------FKEWIT----FF----DQQN--  103 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---------~~~~~~----~~----~~~~--  103 (298)
                      +..+|++++|.|.  +++..+..+.+.+...++|+++|+||+|+..+..         .+..++    .+    ...+  
T Consensus        78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  155 (197)
T cd04104          78 FSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS  155 (197)
T ss_pred             ccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence            6789999998654  3455555555554446789999999999964211         112222    22    1112  


Q ss_pred             -CCEEEEecC--CCcCHHHHHHHHHHHHHh
Q 022351          104 -CPSFGVNSH--NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       104 -~~vi~iSa~--~~~gi~~L~~~l~~~i~~  130 (298)
                       .+++.+|+.  .+.++..|.+.+...+++
T Consensus       156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence             268899998  568999999999887775

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.32  E-value=0.0002  Score=59.33  Aligned_cols=20  Identities=40%  Similarity=0.483  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+|+|..++|||||||+|++
T Consensus         1 V~v~G~~ssGKSTliNaLlG   20 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLG   20 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEcCCCCCHHHHHHHHHh
Confidence            68999999999999999995

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK00007 elongation factor G; Reviewed

Probab=97.32  E-value=0.00043  Score=70.65  Aligned_cols=61  Identities=20%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT   90 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~   90 (298)
                      |||. .+...+...+..+|++++|+|+..+.......+..++...++|+++++||+|+....
T Consensus        83 PG~~-~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         83 PGHV-DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             CCcH-HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            8885 466678888999999999999998877776666665555789999999999998643

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.32  E-value=0.00048  Score=60.45  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.+|||||||++.+..
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~   23 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAK   23 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999983

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.29  E-value=0.00054  Score=60.14  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|..+.|||||+++|+.
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~   22 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLA   22 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999984

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.28  E-value=0.0012  Score=57.19  Aligned_cols=54  Identities=19%  Similarity=0.317  Sum_probs=39.9

Q ss_pred             CCcEEEEEecCCCCCh--hhHHHHHHHHHc--cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351           74 SSRRILVLNKMDLASP--TQFKEWITFFDQ--QNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        74 ~k~~IiVlNK~DL~~~--~~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .++.++++||+|+.+.  .......+.+++  ...+++.+||+++.|++++++++.++
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4577999999999753  223344444433  23689999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.28  E-value=0.00055  Score=60.48  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..++|+++|.+|||||||++.+.
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~   34 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLA   34 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHh
Confidence            45799999999999999999997

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.22  E-value=0.0005  Score=59.28  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++|+++|..++|||||+.+|.++
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~   23 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGV   23 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.22  E-value=0.0014  Score=58.52  Aligned_cols=84  Identities=21%  Similarity=0.284  Sum_probs=52.6

Q ss_pred             CeEEEEEeCCC---CCCcccHHH--hccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-------------------
Q 022351           47 DIILEVRDARI---PFSSEFDQL--RNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-------------------  102 (298)
Q Consensus        47 DlVl~VvDa~~---p~~~~~~~l--~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-------------------  102 (298)
                      -+|++|+|.-.   |.+.....+  ..++-....|.|+|+||+|+.+.+-..+|+..|+..                   
T Consensus       149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~Sm  228 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSM  228 (366)
T ss_pred             eEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhH
Confidence            47889998632   211111112  122223678999999999999887777777655311                   


Q ss_pred             ---------CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 ---------NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ---------~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                               ++.++.+|+.+|.|.++++..+.+.+.+
T Consensus       229 SL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  229 SLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             HHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence                     1245667777777777777766665554

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.20  E-value=0.00079  Score=65.17  Aligned_cols=71  Identities=24%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh-hcchhhhh----------cCCcc--c------eeecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ-IGRITAAE----------KGKLR--H------ATVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~----------~~~~~--~------~~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      .+.++++++|..++|||||+.+|+. .+.+....          .+++.  .      .......|+|.++....+. .+
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            5668999999999999999999974 22221100          01000  0      0111234778777655443 33


Q ss_pred             CCEEEEeCCCC
Q 022351          200 PNIYVLDTPGI  210 (298)
Q Consensus       200 ~~~~liDTPGi  210 (298)
                      ..+.|+||||.
T Consensus        85 ~~i~lIDtPGh   95 (446)
T PTZ00141         85 YYFTIIDAPGH   95 (446)
T ss_pred             eEEEEEECCCh
Confidence            46889999995

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.20  E-value=0.0018  Score=55.93  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=61.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhcc------------------CCCCCCcEEEEEe
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNH------------------HPFSSSRRILVLN   82 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~------------------l~~~~k~~IiVlN   82 (298)
                      -|..+...+........+..+|.+|+|+|...+.+..+     .++...                  ....+.|+++|.|
T Consensus        58 IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn  137 (202)
T cd04102          58 LWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT  137 (202)
T ss_pred             EEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence            47776666666555678999999999999987643322     112111                  0013579999999


Q ss_pred             cCCCCChhhHH------HHHHHHHccCCCEEEEecCCCc-------CHHHHHHHHHHHH
Q 022351           83 KMDLASPTQFK------EWITFFDQQNCPSFGVNSHNKD-------NVKEFLKFLQAHV  128 (298)
Q Consensus        83 K~DL~~~~~~~------~~~~~~~~~~~~vi~iSa~~~~-------gi~~L~~~l~~~i  128 (298)
                      |+||.+.....      .....-++.+.+.+.++|....       +..+|..++...+
T Consensus       138 K~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~  196 (202)
T cd04102         138 KLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVI  196 (202)
T ss_pred             CccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHH
Confidence            99997542111      1111122467788888887542       3445555554444

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.19  E-value=0.0006  Score=68.30  Aligned_cols=66  Identities=24%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeec------CCCCeeeeeEEEEE--c--cC--CCEEEEeCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVS------PQPGETKDIYSLKI--A--SH--PNIYVLDTPGI  210 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~------~~pg~T~~~~~~~~--~--~~--~~~~liDTPGi  210 (298)
                      +++++|.+++|||||+++|+.. +.++..+    ...+..      ...|.|.....+.+  .  ++  ..+.|+||||.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~----~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~   80 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISERE----MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   80 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCcccc----ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence            7999999999999999999852 2222110    011111      23466766543322  1  11  24789999998


Q ss_pred             CCC
Q 022351          211 LPP  213 (298)
Q Consensus       211 ~~~  213 (298)
                      ...
T Consensus        81 ~dF   83 (595)
T TIGR01393        81 VDF   83 (595)
T ss_pred             HHH
Confidence            653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PLN00023 GTP-binding protein; Provisional

Probab=97.18  E-value=0.00096  Score=61.60  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||++.+..
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~   43 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVK   43 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhc
Confidence            457999999999999999999983

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.18  E-value=0.0015  Score=58.70  Aligned_cols=60  Identities=20%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      ||| ..+...+...+..+|.+++|+|+..+.......+...+...++|.++++||+|+...
T Consensus        72 PG~-~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          72 PGY-ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA  131 (268)
T ss_pred             cCH-HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence            777 455667778889999999999998765544343433333467999999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.18  E-value=0.00059  Score=69.65  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=46.9

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      -|||. ++...+...+..+|++++|+|+..+.......+..++...++|+++++||+|+...
T Consensus        82 TPG~~-~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        82 TPGHV-DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CCCCc-chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            37774 45556778899999999999999876665555555444567999999999999754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0011  Score=63.58  Aligned_cols=126  Identities=25%  Similarity=0.165  Sum_probs=81.2

Q ss_pred             chhHHHHHhhhcceecccCCCc----------------------cch----hhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 022351            5 SSSLFKLAREIGTAVSQKKGGG----------------------WYG----PHMAAATRAIADRMPLVDIILEVRDARIP   58 (298)
Q Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~----------------------wfp----ghm~~~~~~i~~~l~~aDlVl~VvDa~~p   58 (298)
                      ||-|-.|.++--.++-..+|++                      |-.    +--.-.+++.++.+.++|+|++|+|+...
T Consensus       282 SSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~  361 (531)
T KOG1191|consen  282 SSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEES  361 (531)
T ss_pred             HHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccc
Confidence            6677788888777777776621                      111    11133567788899999999999999655


Q ss_pred             CCcccHHHhccCCC------------CCCcEEEEEecCCCCChhhHHHH--HHHHHcc---CCCE-EEEecCCCcCHHHH
Q 022351           59 FSSEFDQLRNHHPF------------SSSRRILVLNKMDLASPTQFKEW--ITFFDQQ---NCPS-FGVNSHNKDNVKEF  120 (298)
Q Consensus        59 ~~~~~~~l~~~l~~------------~~k~~IiVlNK~DL~~~~~~~~~--~~~~~~~---~~~v-i~iSa~~~~gi~~L  120 (298)
                      .++.+..+.+.+..            ...+.+++.||+|+.++-....|  +.+....   .+++ ..+||.+++|++.|
T Consensus       362 ~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L  441 (531)
T KOG1191|consen  362 DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERL  441 (531)
T ss_pred             ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHH
Confidence            45544443332211            23789999999999876211111  1222111   2344 45999999999999


Q ss_pred             HHHHHHHHHh
Q 022351          121 LKFLQAHVRN  130 (298)
Q Consensus       121 ~~~l~~~i~~  130 (298)
                      ...+-+.+..
T Consensus       442 ~~all~~~~~  451 (531)
T KOG1191|consen  442 STALLNIVER  451 (531)
T ss_pred             HHHHHHHHHH
Confidence            9998877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		3e-24
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		2e-21

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
           W+  HMA A R + +++ L+DI+ E+ DARIP SS    + +     +  RI++LNK D 
Sbjct: 5   WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI--LKNKPRIMLLNKADK 62
Query: 87  ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL----KFLQAHVRNLRKSDYDASSDT 142
           A     ++W   F+ Q   S  +NS N   + + +    + LQ     +R       +  
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-- 120
Query: 143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNI 202
           +  +++GIPNVGKS L N L            K   A    +PG T     +K+     +
Sbjct: 121 IRALIIGIPNVGKSTLINRL-----------AKKNIAKTGDRPGITTSQQWVKVGKE--L 167
Query: 203 YVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGIL 248
            +LDTPGIL P+  D  V  +LA+TGAI DS +  +++A + L  L
Sbjct: 168 ELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 104/204 (50%), Gaps = 32/204 (15%)
Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDL 86
           WY  H+  A R I D + LV+ ++EVRDAR PF++    +     FS    I++LNK+D+
Sbjct: 3   WYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV----DFSRKETIILLNKVDI 58
Query: 87  ASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVM 146
           A     K+W+ FF +Q      + +H  +  K  LK          K  +D  +    V+
Sbjct: 59  ADEKTTKKWVEFFKKQGKRV--ITTHKGEPRKVLLK----------KLSFDRLA---RVL 103
Query: 147 LLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLD 206
           ++G+PN GKS + N L          KGK R ++V  QPG TK I    + +   + +LD
Sbjct: 104 IVGVPNTGKSTIINKL----------KGK-RASSVGAQPGITKGIQWFSLEN--GVKILD 150
Query: 207 TPGILPPEIHDVEVCSKLALTGAI 230
           TPGIL   I   ++ +KL L G++
Sbjct: 151 TPGILYKNIFSEDLAAKLLLVGSL 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	1e-69
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	8e-60
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	1e-28
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	7e-27
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	1e-11
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	3e-08
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	3e-07
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	1e-06
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	1e-05
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	3e-05
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	6e-05
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	8e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	4e-04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	5e-04
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	6e-04
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	7e-04

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  216 bits (552), Expect = 1e-69
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 23/228 (10%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNK 83
           W+  HMA A R + +++ L+DI+ E+ DARIP SS     + +  + P     RI++LNK
Sbjct: 5   WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKP-----RIMLLNK 59

Query: 84  MDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNL--RKSDYDASSD 141
            D A     ++W   F+ Q   S  +NS N   + + +   +  ++    R         
Sbjct: 60  ADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPR 119

Query: 142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN 201
            +  +++GIPNVGKS L N L            K   A    +PG T     +K+     
Sbjct: 120 AIRALIIGIPNVGKSTLINRL----------AKK-NIAKTGDRPGITTSQQWVKVG--KE 166

Query: 202 IYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
           + +LDTPGIL P+  D  V  +LA+TGAI DS +  +++A + L  L 
Sbjct: 167 LELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLE 214

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  190 bits (485), Expect = 8e-60
 Identities = 69/224 (30%), Positives = 105/224 (46%), Gaps = 34/224 (15%)

Query: 27  WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH-PFSSSRRILVLNKMD 85
           WY  H+  A R I D + LV+ ++EVRDAR PF++       +   FS    I++LNK+D
Sbjct: 3   WYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFAT-----SAYGVDFSRKETIILLNKVD 57

Query: 86  LASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
           +A     K+W+ FF +Q       +    +  K  LK L    R  R            V
Sbjct: 58  IADEKTTKKWVEFFKKQGKRVITTHK--GEPRKVLLKKLSFD-RLAR------------V 102

Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
           +++G+PN GKS + N L          KGK R ++V  QPG TK I    +     + +L
Sbjct: 103 LIVGVPNTGKSTIINKL----------KGK-RASSVGAQPGITKGIQWFSLE--NGVKIL 149

Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILN 249
           DTPGIL   I   ++ +KL L G++    +  + + +    I  
Sbjct: 150 DTPGILYKNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFA 193

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score =  111 bits (279), Expect = 1e-28
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 37/257 (14%)

Query: 37  RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI 96
           R +        +++++ D      S    L       +++ +LV NK DL   +   + +
Sbjct: 61  RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKV 118

Query: 97  TFFDQQNCPSFG--------VNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLL 148
             + + +    G        +++     + E    ++ +                 V ++
Sbjct: 119 KHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKD------------VYVV 166

Query: 149 GIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTP 208
           G  NVGKS   N +  I   +   +      T S  PG T D+  + I       + DTP
Sbjct: 167 GCTNVGKSTFINRM--IKEFSDETE---NVITTSHFPGTTLDL--IDIPLDEESSLYDTP 219

Query: 209 GILPPEIHDVEVCSK----LALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
           GI+        V  +    +  T  I        E    F   L   D      +     
Sbjct: 220 GIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCH 279

Query: 265 INKPLTLH----HKADQ 277
            +  LT+H     KAD+
Sbjct: 280 FSNRLTIHRTKLEKADE 296

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score =  106 bits (267), Expect = 7e-27
 Identities = 47/260 (18%), Positives = 82/260 (31%), Gaps = 44/260 (16%)

Query: 37  RAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNKMDLA----SP 89
             +        +++ + D      S      +    +P      +LV NK DL       
Sbjct: 63  SMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNP-----ILLVGNKADLLPRSVKY 117

Query: 90  TQFKEWIT-FFDQQNCPSFGV---NSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
            +   W+    ++       V   ++     + + ++ +  +                 V
Sbjct: 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGD------------V 165

Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
            ++G  NVGKS   N +           GK    T S  PG T D+  ++I       + 
Sbjct: 166 YVVGCTNVGKSTFINRI------IEEATGKGNVITTSYFPGTTLDM--IEIPLESGATLY 217

Query: 206 DTPGILPPEIHDVEVCSK----LALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFS 261
           DTPGI+        V ++    +     I        E    F G L   D  K   +  
Sbjct: 218 DTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSF 277

Query: 262 INQINKPLTLH----HKADQ 277
           +  +   LT+H     KAD 
Sbjct: 278 VCYMANELTVHRTKLEKADS 297

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKL 176
            ++F    Q  +            +++TV++LG   VGKS+  NSL  IG          
Sbjct: 11  FQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL--IGE--------- 59

Query: 177 RHATVSPQPGETKDI--YSLKIASHPNIYVLDTPGILPPEIHDVEVCSK 223
           +   VSP   E       S  +     I ++DTPG++     + +    
Sbjct: 60  QVVRVSPFQAEGLRPVMVSRTMGGFT-INIIDTPGLVEAGYVNHQALEL 107

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 14/108 (12%)

Query: 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKL 176
           +  F    Q  +  L  +      +++T++++G   VGKS+  NS+  IG          
Sbjct: 14  INTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSI--IGE--------- 62

Query: 177 RHATVSPQPGETKDI--YSLKIASHPNIYVLDTPGILPPEIHDVEVCS 222
           R  ++SP   E       S   A    + ++DTPG++     +    +
Sbjct: 63  RVVSISPFQSEGPRPVMVSRSRAGFT-LNIIDTPGLIEGGYINDMALN 109

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 57/177 (32%)

Query: 78  ILVLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD 135
           ++V+NKMDL      ++     +      P    ++     ++E  ++L+          
Sbjct: 119 VMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK-------- 170

Query: 136 YDASSDTVTVMLLGIPNVGKSALANSLH-----QIGRI-TAAEKGKL--RHATVSPQPGE 187
                      + G+  VGKS+L N+++     ++  +    ++G+     A        
Sbjct: 171 --------ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ------- 215

Query: 188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYF 244
              +           YV+DTPG    EI+D+E                  +EL  YF
Sbjct: 216 ---LLKFD----FGGYVVDTPGFANLEINDIEP-----------------EELKHYF 248

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 124 LQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSP 183
           +Q     +  +  +  S  + V + G    GKS+  N+L   G     E      A  + 
Sbjct: 51  IQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTL--RGIGNEEEG-----AAKTG 103

Query: 184 QPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVE 219
               T + +  K  + PN+   D PGI         
Sbjct: 104 VVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDT 139

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 56/184 (30%)

Query: 78  ILVLNKMDLASPTQ---FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS 134
           ++V NK+DL +  +    + WI+ +         V++   + + E + +L+         
Sbjct: 114 VIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGF------- 166

Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLH----QIGRI-TAAEKGK--LRHATVSPQPGE 187
                      +L G   VGKS++ + L     +   +    E+G+       + P    
Sbjct: 167 ---------ICILAGPSGVGKSSILSRLTGEELRTQEVSEKTERGRHTTTGVRLIPFGKG 217

Query: 188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGI 247
           +              +V DTPG            SK+  T  +       +E+  YF   
Sbjct: 218 S--------------FVGDTPGF-----------SKVEATMFVKP-----REVRNYFREF 247

Query: 248 LNFS 251
           L + 
Sbjct: 248 LRYQ 251

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 60/188 (31%)

Query: 78  ILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK 133
           I+ + KMDL          + +   +       +  +S ++D++ + +   Q        
Sbjct: 121 IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDK------ 174

Query: 134 SDYDASSDTVTVMLLGIPNVGKSALANSLH-----QIGRI-TAAEKGK--LRHATVSPQP 185
                     T +  G   VGKS+L N++      +   I     +GK   RH       
Sbjct: 175 ----------TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE----- 219

Query: 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
                +            V DTPG    E  D+E                  +EL   F 
Sbjct: 220 -----LIHT-----SGGLVADTPGFSSLEFTDIEE-----------------EELGYTFP 252

Query: 246 GILNFSDE 253
            I   S  
Sbjct: 253 DIREKSSS 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 46/329 (13%), Positives = 97/329 (29%), Gaps = 102/329 (31%)

Query: 51  EVRDA-RIPFSS-EFDQ-LRNHHPFSSSRRIL--VLNKMD-----------------LAS 88
           +V+D  +   S  E D  + +    S + R+   +L+K +                 L S
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 89  PTQFK------EWITFFDQQNCPSFGVNS-HNKDNV---KEFLKFLQAHVRNLRKSDYDA 138
           P + +          + +Q++   +  N    K NV   + +LK L+  +  LR +    
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKN-- 152

Query: 139 SSDTVTVMLLGIPNVGKSALANSLHQ----------------IGRITAAE---------- 172
                 V++ G+   GK+ +A  +                  +    + E          
Sbjct: 153 ------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 173 -----KGKLRHATVSPQPGETKDIYS-----LKIASHPNIY-VLDTPGILPPEIHDVEV- 220
                    R    S        I +     LK   + N   VL         + + +  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------NVQNAKAW 259

Query: 221 ------CSKLALTGAIGDS-FVGGKELAQYFLGILN--FSDEYKK--WAKFSINQINKPL 269
                 C  L  T     + F+         L   +   + +  K    K+ ++   +P 
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDC--RPQ 316

Query: 270 TLHHKADQSSGSESGMIWKR-QNPTDHTQ 297
            L  +   ++     +I +  ++      
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWD 345

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 59/188 (31%)

Query: 78  ILVLNKMDLASPTQ---FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS 134
           ++VLNK+DL          E +  +         V+SH +D +K   + L          
Sbjct: 164 LIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGR------- 216

Query: 135 DYDASSDTVTVMLLGIPNVGKSALANSLH------QIGRI-TAAEKGK--LRHATVSPQP 185
                      +  G   VGKS+L N+L           +   +  G+     A +   P
Sbjct: 217 ---------ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP 267

Query: 186 GETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFL 245
                             V+D+PG+            +  L        +  +++ Q F+
Sbjct: 268 HGG--------------DVIDSPGV-----------REFGLWH------LEPEQITQGFV 296

Query: 246 GILNFSDE 253
              ++   
Sbjct: 297 EFHDYLGH 304

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
           T++  G  NVGKS L   L   G          +      +PG T+ I  ++     N  
Sbjct: 3   TIIFAGRSNVGKSTLIYRL--TG----------KKVRRGKRPGVTRKIIEIEWK---NHK 47

Query: 204 VLDTPGI 210
           ++D PG 
Sbjct: 48  IIDMPGF 54

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPN--I 202
           +++ G  NVGKS+  N+L  +G+           + VS   G T D     +  HP   +
Sbjct: 37  IVVAGRRNVGKSSFMNAL--VGQ---------NVSIVSDYAGTTTDPVYKSMELHPIGPV 85

Query: 203 YVLDTPGILPPE 214
            ++DTPG+    
Sbjct: 86  TLVDTPGLDDVG 97

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 66  LRNHHPFSSSR-RILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFL 124
           +  + P    R  ++ LNK+DL      K       ++      V++     +    + L
Sbjct: 260 VGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319

Query: 125 QAHVRNLRKSD 135
            A VR+    +
Sbjct: 320 HALVRSTPPPE 330

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 47  DIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS 106
           D++L   DA   +++   ++           ILV+NK+DL             +      
Sbjct: 305 DLVLLTIDAATGWTTGDQEIYEQ--VKHRPLILVMNKIDLVEKQLITSLEYPEN--ITQI 360

Query: 107 FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTV 145
               +  K  +      L+  +  + ++    ++D    
Sbjct: 361 VHTAAAQKQGIDS----LETAILEIVQTGKVQAADMDLA 395

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 47  DIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPS 106
           DI+L V DA  P   E  ++       + R ++V+NK+D+      +E I      +   
Sbjct: 325 DIVLFVLDASSPLDEEDRKILER--IKNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHM 381

Query: 107 FGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTV 143
             +++   + +++    L+  +    +  ++  SD++
Sbjct: 382 VKISALKGEGLEK----LEESIYRETQEIFERGSDSL 414

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD-IYSLKIASHPNI 202
            V+++G PNVGKS+L N L  + +         R A V+  PG T+D    +        
Sbjct: 3   KVVIVGRPNVGKSSLFNRL--LKK---------RSAVVADVPGVTRDLKEGVVETDRGRF 51

Query: 203 YVLDTPGILPPEIHDVEV 220
            ++DT G+   +  + ++
Sbjct: 52  LLVDTGGLWSGDKWEKKI 69

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 137 DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI 196
           +  +  + ++L+G    GKSA  NS+  +GR         +  T   +   +        
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSI--LGRKVFHSGTAAKSITKKCEKRSSS------- 74

Query: 197 ASHPNIYVLDTPGILPPEIHDVEVCSKLA 225
                + V+DTPGI   E+ + E   ++ 
Sbjct: 75  WKETELVVVDTPGIFDTEVPNAETSKEII 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	100.0
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	100.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.91
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.9
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.78
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.28
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.28
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.04
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.01
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.01
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.98
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.96
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.94
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.93
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.92
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.91
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.9
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.89
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.88
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.85
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.84
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.84
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.8
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.8
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.8
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.79
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.79
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.79
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.78
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.78
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.77
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.76
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.76
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.75
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.74
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.74
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.74
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.74
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.73
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.73
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.72
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.72
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.71
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.7
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.69
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.69
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.68
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.68
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.67
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.67
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.67
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.67
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.67
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.66
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.65
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.65
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.64
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.64
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.64
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.63
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.62
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.62
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.61
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.61
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.59
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.59
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.59
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.58
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.58
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.57
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.57
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.57
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.57
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.57
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.57
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.56
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.56
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.56
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.56
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.55
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.55
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.55
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.55
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.53
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.53
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.53
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.53
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.53
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.53
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.52
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.52
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.52
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.52
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.52
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.51
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.51
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.51
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.51
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.51
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.5
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.5
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.5
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.5
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.5
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.49
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.49
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.49
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.48
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.48
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.48
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.48
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.48
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.48
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.48
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.48
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.47
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.47
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.47
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.47
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.46
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.46
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.46
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.46
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.46
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.46
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.46
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.45
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.45
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.45
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.45
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.45
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.44
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.44
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.44
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.44
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.44
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.44
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.44
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.43
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.43
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.43
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.43
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.43
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.42
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.42
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.42
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.42
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.41
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.41
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.41
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.4
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.4
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.4
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.4
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.4
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.39
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.39
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.39
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.39
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.39
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.39
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.39
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.38
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.38
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.38
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.38
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.38
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.37
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.37
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.37
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.37
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.36
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.36
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.36
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.35
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.35
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.35
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.35
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.35
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.35
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.34
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.34
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.34
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.34
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.34
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.34
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.33
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.33
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.33
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.33
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.33
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.33
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.32
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.31
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.31
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.31
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.31
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.3
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.3
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.3
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.3
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.3
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.3
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.29
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.29
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.29
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.29
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.28
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.28
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.28
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.28
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.28
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.28
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.28
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.28
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.27
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.26
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.26
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.25
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.25
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.25
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.25
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.25
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.24
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.24
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.24
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.22
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.22
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.21
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.2
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.2
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.2
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.19
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.19
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.18
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.18
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.17
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.17
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.16
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.16
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.16
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.15
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.15
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.14
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.14
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.14
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.14
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.13
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.13
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.11
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.11
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.11
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.1
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.1
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.09
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.09
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.08
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.08
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.07
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.07
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.06
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.02
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.02
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.01
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.01
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.01
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.01
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.24
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.99
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.98
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.92
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.92
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.92
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.92
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.92
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.91
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.89
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.89
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.87
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.86
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.85
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.85
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.84
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.84
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.84
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.81
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.81
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.8
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.78
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.77
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.76
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.76
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.76
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.75
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.75
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.75
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.74
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.74
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.73
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.72
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.71
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.7
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.69
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.69
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.67
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.67
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.66
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.64
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.63
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.63
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.61
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.6
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.59
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.58
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.56
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.55
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.5
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.49
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.45
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.41
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.39
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.31
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.3
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.27
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.25
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.23
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.21
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.2
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.2
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.19
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.18
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.15
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.14
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.13
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.12
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.09
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.08
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.07
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.03
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.97
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.95
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.91
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.89
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.88
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.84
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.83
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.79
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.71
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.66
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.58
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.45
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.23
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.21
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.11
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.11
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.11
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.08
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	96.07
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.06
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.88
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.87
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.86
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.83
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.77
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.75
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.6
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.54
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.52
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.51
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.49
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.44
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.39
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.31
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	95.26
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.21
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.2
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.18
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.17
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.15
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.14
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.12
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.12
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.08
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.07
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.05
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.99
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.97
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.95
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.93
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.93
1g6h_A	257	High-affinity branched-chain amino acid transport	94.92
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.9
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.88
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.88
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.87
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.86
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.86
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.86
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.86
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.84
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.82
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	94.79
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.75
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.75
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.74
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.74
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.73
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.71
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.68
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.67
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.65
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.64
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.6
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.57
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.56
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.54
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.52
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.52
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.49
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.48
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.47
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.44
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.44
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.42
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.42
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.41

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=100.00  E-value=9.6e-40  Score=295.12  Aligned_cols=234  Identities=29%  Similarity=0.451  Sum_probs=178.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC  104 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~  104 (298)
                      ++||||||.++.+++.+.++++|+|++|+|+++|.++.++.+.+++  .++|.++|+||+||++.+..+.|.++++..++
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~   80 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFENQGI   80 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTC
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHHhcCC
Confidence            7999999999999999999999999999999999999888888875  58999999999999998788899999977788


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHhhhh--ccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS  182 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~--~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~  182 (298)
                      +++++||.++.|+++|++.+.+.+.+..+  .........++++++|.||||||||||+|++           .+.+.++
T Consensus        81 ~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~-----------~~~~~~~  149 (282)
T 1puj_A           81 RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK-----------KNIAKTG  149 (282)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT-----------SCCC---
T ss_pred             cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhc-----------CceeecC
Confidence            99999999999999999988887764211  0001124578999999999999999999983           4567899


Q ss_pred             CCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc
Q 022351          183 PQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI  262 (298)
Q Consensus       183 ~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  262 (298)
                      +.||+|++.+.+.+  +.+++|+||||+..+...+.+.+..+|+.|+|++..++..+++.|++++++...+.....++..
T Consensus       150 ~~~g~T~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~~  227 (282)
T 1puj_A          150 DRPGITTSQQWVKV--GKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGL  227 (282)
T ss_dssp             ---------CCEEE--TTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred             CCCCeeeeeEEEEe--CCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhChHHHHHHcCC
Confidence            99999999886655  3469999999999999988888899999999999999999999999999988765544444543


Q ss_pred             c--CCCccccccc
Q 022351          263 N--QINKPLTLHH  273 (298)
Q Consensus       263 ~--~~~~~~~~~~  273 (298)
                      +  ..+..++|+.
T Consensus       228 ~~~~~~~~~~l~~  240 (282)
T 1puj_A          228 DEIPEDIAELFDA  240 (282)
T ss_dssp             SSCCSSHHHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            2  2234455553

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=100.00  E-value=6.3e-36  Score=267.40  Aligned_cols=185  Identities=30%  Similarity=0.473  Sum_probs=136.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCC
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCP  105 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~  105 (298)
                      +||||||.++++++++.++++|+|++|+|+++|..+.++.+. ++   ++|+++|+||+||++.+..+.|.++++..+++
T Consensus         2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~   77 (262)
T 3cnl_A            2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADEKTTKKWVEFFKKQGKR   77 (262)
T ss_dssp             -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe
Confidence            799999999999999999999999999999999998887666 53   89999999999999987788999999777888


Q ss_pred             EEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC
Q 022351          106 SFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP  185 (298)
Q Consensus       106 vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p  185 (298)
                      + ++||.++.|+++|++.+.+.+              .+++++|.||||||||||+|.+           .....+++.|
T Consensus        78 v-~iSa~~~~gi~~L~~~l~~~~--------------~~v~~vG~~~vGKSslin~l~~-----------~~~~~~~~~~  131 (262)
T 3cnl_A           78 V-ITTHKGEPRKVLLKKLSFDRL--------------ARVLIVGVPNTGKSTIINKLKG-----------KRASSVGAQP  131 (262)
T ss_dssp             E-EECCTTSCHHHHHHHHCCCTT--------------CEEEEEESTTSSHHHHHHHHHT-----------TCC-------
T ss_pred             E-EEECCCCcCHHHHHHHHHHhh--------------hheEEeCCCCCCHHHHHHHHhc-----------ccccccCCCC
Confidence            8 999999999998887763210              5899999999999999999983           4456788999


Q ss_pred             CeeeeeEEEEEccCCCEEEEeCCCCCCCCC-CChhhhhhhhhhcccccCCCChHHHHHHHHHHHccC
Q 022351          186 GETKDIYSLKIASHPNIYVLDTPGILPPEI-HDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS  251 (298)
Q Consensus       186 g~T~~~~~~~~~~~~~~~liDTPGi~~~~~-~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~  251 (298)
                      |+|+..+.+.+.  .+++|+||||+..+.+ .+.+.+         .+.+++...++.|++++++..
T Consensus       132 g~T~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~  187 (262)
T 3cnl_A          132 GITKGIQWFSLE--NGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER  187 (262)
T ss_dssp             ---CCSCEEECT--TSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH
T ss_pred             CCccceEEEEeC--CCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh
Confidence            999988776543  4689999999999988 665443         233344555555555555543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.91  E-value=5.1e-24  Score=199.06  Aligned_cols=160  Identities=21%  Similarity=0.224  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHH-HHccCC---
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITF-FDQQNC---  104 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~-~~~~~~---  104 (298)
                      +++.+.+..+...+++|++|+|++++..+..+.+.+++  .++|+++|+||+||++.+    ...+|... ++..++   
T Consensus        59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~  136 (369)
T 3ec1_A           59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPV  136 (369)
T ss_dssp             CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCS
T ss_pred             HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcc
Confidence            44555666666889999999999998877777777664  479999999999998753    35566553 455665   


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCC
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQ  184 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~  184 (298)
                      +++.+||+++.|+++|++.+.+...            ..+++++|.||||||||+|+|++...      +......+++.
T Consensus       137 ~v~~iSA~~g~gi~~L~~~I~~~~~------------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~  198 (369)
T 3ec1_A          137 DVCLVSAAKGIGMAKVMEAINRYRE------------GGDVYVVGCTNVGKSTFINRIIEEAT------GKGNVITTSYF  198 (369)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHT------------TSCEEEECCTTSSHHHHHHHHHHHHH------HTTCCCEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc------------cCcEEEEcCCCCchHHHHHHHHhhcc------CCccceeecCC
Confidence            6899999999999999999876642            24799999999999999999995311      11346788999


Q ss_pred             CCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          185 PGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       185 pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ||||++...+.+..  +++++||||+..+.
T Consensus       199 ~gtT~~~~~~~~~~--~~~liDtPG~~~~~  226 (369)
T 3ec1_A          199 PGTTLDMIEIPLES--GATLYDTPGIINHH  226 (369)
T ss_dssp             TTSSCEEEEEECST--TCEEEECCSCCCCS
T ss_pred             CCeEEeeEEEEeCC--CeEEEeCCCcCcHH
Confidence            99999988776543  48999999998764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.90  E-value=8.4e-24  Score=197.52  Aligned_cols=160  Identities=21%  Similarity=0.267  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHH-HHccCC---
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITF-FDQQNC---  104 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~-~~~~~~---  104 (298)
                      +++.+.+..+...+|++++|+|++++..++.+.+.+++  .++|+++|+||+||++..    ...+|... ++..++   
T Consensus        57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~  134 (368)
T 3h2y_A           57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE  134 (368)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence            34555566667788899999999987655556666653  479999999999998654    45566544 345566   


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCC-ccceeecC
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGK-LRHATVSP  183 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~-~~~~~~~~  183 (298)
                      +++.+||+++.|+++|++.+.+...            +.+++++|.||||||||+|+|++...      +. .+...+++
T Consensus       135 ~v~~iSA~~g~gi~~L~~~l~~~~~------------~~~i~~vG~~nvGKStliN~L~~~~~------~~~~~~~~~~~  196 (368)
T 3h2y_A          135 DVFLISAAKGQGIAELADAIEYYRG------------GKDVYVVGCTNVGKSTFINRMIKEFS------DETENVITTSH  196 (368)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT------------TSCEEEEEBTTSSHHHHHHHHHHHHT------TSCSSCCEEEC
T ss_pred             cEEEEeCCCCcCHHHHHhhhhhhcc------------cceEEEecCCCCChhHHHHHHHhhhc------cccccceecCC
Confidence            6899999999999999999876542            24799999999999999999985310      11 23567899


Q ss_pred             CCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          184 QPGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       184 ~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      .||||++...+.+..  +++++||||+..+.
T Consensus       197 ~~gtT~~~~~~~~~~--~~~liDtPG~~~~~  225 (368)
T 3h2y_A          197 FPGTTLDLIDIPLDE--ESSLYDTPGIINHH  225 (368)
T ss_dssp             CC----CEEEEESSS--SCEEEECCCBCCTT
T ss_pred             CCCeecceEEEEecC--CeEEEeCCCcCcHH
Confidence            999999988876543  48999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.87  E-value=1.2e-23  Score=191.45  Aligned_cols=145  Identities=20%  Similarity=0.231  Sum_probs=106.4

Q ss_pred             HhcCCCCeEEEEEeCCCCCCcccHHHhccCC---CCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHP---FSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      ..++++|+|++|+|++.|..+.+ .+.+++.   ..++|+++|+||+||.++..    ++.|.+.|+..|++++++||.+
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~  160 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD  160 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence            46999999999999999888776 5555542   36899999999999998744    6789999977889999999999


Q ss_pred             CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCC-------CC
Q 022351          114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQ-------PG  186 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~-------pg  186 (298)
                      +.|+++|++..                .+-.++++|.||||||||+|+|.+..           ...++..       .+
T Consensus       161 ~~g~~~L~~~~----------------~G~~~~lvG~sG~GKSTLln~L~g~~-----------~~~~G~I~~~~~~G~~  213 (307)
T 1t9h_A          161 QDSLADIIPHF----------------QDKTTVFAGQSGVGKSSLLNAISPEL-----------GLRTNEISEHLGRGKH  213 (307)
T ss_dssp             HTTCTTTGGGG----------------TTSEEEEEESHHHHHHHHHHHHCC-----------------------------
T ss_pred             CCCHHHHHhhc----------------CCCEEEEECCCCCCHHHHHHHhcccc-----------cccccceeeecCCCcc
Confidence            99888766543                23488999999999999999998421           1111111       13


Q ss_pred             eeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351          187 ETKDIYSLKIASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       187 ~T~~~~~~~~~~~~~~~liDTPGi~~~~~~  216 (298)
                      +|+..+.+...   ..+++||||+..+.+.
T Consensus       214 tt~~~~~~~~~---~g~v~dtpg~~~~~l~  240 (307)
T 1t9h_A          214 TTRHVELIHTS---GGLVADTPGFSSLEFT  240 (307)
T ss_dssp             -CCCCCEEEET---TEEEESSCSCSSCCCT
T ss_pred             cccHHHHhhcC---CEEEecCCCccccccc
Confidence            45544444432   4799999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=1.5e-21  Score=186.32  Aligned_cols=167  Identities=22%  Similarity=0.284  Sum_probs=117.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecC
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSH  112 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~  112 (298)
                      ....++..+++.+|+||+|+|++.+++..+..+..++...++|+++|+||+|+........+.+++ ..++ +++++||+
T Consensus        70 ~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~  148 (439)
T 1mky_A           70 KMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAE  148 (439)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTT
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEecc
Confidence            345566788999999999999998887776666666544589999999999985331111113333 5566 78999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhhhc-cC-CCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee
Q 022351          113 NKDNVKEFLKFLQAHVRNLRKS-DY-DASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD  190 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~~~~~-~~-~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~  190 (298)
                      ++.|+++|++.+.+.+++.... .. ......++++++|.||||||||+|+|++           .....+++.||+|++
T Consensus       149 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g-----------~~~~~v~~~~gtT~d  217 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRD  217 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECCCC-----
T ss_pred             CCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhC-----------CcccccCCCCCCcCC
Confidence            9999999999998888752100 00 0123468999999999999999999983           455678999999998


Q ss_pred             eEEEEE-ccCCCEEEEeCCCCCC
Q 022351          191 IYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       191 ~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      .....+ ..+..+.++||||+..
T Consensus       218 ~~~~~i~~~g~~~~l~Dt~G~~~  240 (439)
T 1mky_A          218 PVDDEVFIDGRKYVFVDTAGLRR  240 (439)
T ss_dssp             -CCEEEEETTEEEEESSCSCC--
T ss_pred             ceEEEEEECCEEEEEEECCCCcc
Confidence            763222 2334688999999854

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=4.6e-22  Score=189.66  Aligned_cols=165  Identities=18%  Similarity=0.289  Sum_probs=114.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecC
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSH  112 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~  112 (298)
                      +...++..++..+|++|+|+|++.+.+..+..+..++...++|+++|+||+|+.+...  ...+++ ..++ +++++||+
T Consensus        71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~  147 (436)
T 2hjg_A           71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGT  147 (436)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTT
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCc
Confidence            4556677789999999999999998887777777766667899999999999975421  111223 3454 78999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE
Q 022351          113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY  192 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~  192 (298)
                      ++.|+++|++.+.+.+++...  .......++|+++|.||||||||+|+|++           .....+++.||||++..
T Consensus       148 ~g~gv~~L~~~i~~~l~~~~~--~~~~~~~~ki~lvG~~nvGKSSLin~l~~-----------~~~~~~~~~~gtT~d~~  214 (436)
T 2hjg_A          148 HGLGLGDLLDAVAEHFKNIPE--TKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRDAV  214 (436)
T ss_dssp             TTBTHHHHHHHHHHTGGGCCS--SCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEEC---------C
T ss_pred             CCCChHHHHHHHHHhcCcccc--ccccccCcEEEEEcCCCCCHHHHHHHHhC-----------CCceeecCCCCceeeee
Confidence            999999999999877654110  01123568999999999999999999993           45567889999999876


Q ss_pred             EEEE-ccCCCEEEEeCCCCCCCC
Q 022351          193 SLKI-ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       193 ~~~~-~~~~~~~liDTPGi~~~~  214 (298)
                      ...+ ..+..+.|+||||+....
T Consensus       215 ~~~~~~~~~~~~l~DT~G~~~~~  237 (436)
T 2hjg_A          215 DTSFTYNQQEFVIVDTAGMRKKG  237 (436)
T ss_dssp             CEEEEETTEEEEETTHHHHTCBT
T ss_pred             EEEEEECCeEEEEEECCCcCcCc
Confidence            3322 233368999999987643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.83  E-value=6e-21  Score=173.65  Aligned_cols=150  Identities=20%  Similarity=0.378  Sum_probs=103.4

Q ss_pred             HhcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccCCCEEEEecCCC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQNCPSFGVNSHNK  114 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~~~vi~iSa~~~  114 (298)
                      .++.++|++++|+|++.|..+.+ .+.++   +...++|+++|+||+||.+...   .+++.+.++..+++++++||+++
T Consensus        75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g  153 (302)
T 2yv5_A           75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG  153 (302)
T ss_dssp             TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            47999999999999998854433 12222   2236899999999999987652   56777777777889999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeeeEE
Q 022351          115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDIYS  193 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~~~  193 (298)
                      .|+++|.+.+.                +..++++|.+|||||||+|+|. ......     +.... .+.-..+|+....
T Consensus       154 ~gi~~L~~~l~----------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~-----G~i~~~~~~G~~~t~~~~~  211 (302)
T 2yv5_A          154 EGIDELVDYLE----------------GFICILAGPSGVGKSSILSRLT-GEELRT-----QEVSEKTERGRHTTTGVRL  211 (302)
T ss_dssp             TTHHHHHHHTT----------------TCEEEEECSTTSSHHHHHHHHH-SCCCCC-----SCC---------CCCCEEE
T ss_pred             CCHHHHHhhcc----------------CcEEEEECCCCCCHHHHHHHHH-HhhCcc-----cccccccCCCCCceeeEEE
Confidence            99999887653                2378999999999999999997 422110     01100 0011124444443


Q ss_pred             EEEccCCCEEEEeCCCCCCCCC
Q 022351          194 LKIASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       194 ~~~~~~~~~~liDTPGi~~~~~  215 (298)
                      +...  ...+++||||+..+.+
T Consensus       212 ~~~~--~~g~v~d~pg~~~~~l  231 (302)
T 2yv5_A          212 IPFG--KGSFVGDTPGFSKVEA  231 (302)
T ss_dssp             EEET--TTEEEESSCCCSSCCG
T ss_pred             EEcC--CCcEEEECcCcCcCcc
Confidence            3332  2479999999986554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=7.9e-21  Score=182.11  Aligned_cols=166  Identities=19%  Similarity=0.305  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEe
Q 022351           32 MAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVN  110 (298)
Q Consensus        32 m~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iS  110 (298)
                      ..+...++..++..+|+||+|+|++.++...+..+..++...++|+++|+||+|+....  ..+.+++ ..++ +++++|
T Consensus        89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iS  165 (456)
T 4dcu_A           89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPIS  165 (456)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCSG-GGSSSSEEECC
T ss_pred             HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEee
Confidence            45666777788999999999999998888888778777766899999999999986432  2222333 3343 678999


Q ss_pred             cCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee
Q 022351          111 SHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD  190 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~  190 (298)
                      |.++.|+.+|++.+.+.++....  ........+++++|.||||||||+|+|++           .....+++.||+|++
T Consensus       166 A~~g~gv~~L~~~i~~~l~~~~~--~~~~~~~~ki~ivG~~~vGKSslin~l~~-----------~~~~~~~~~~gtt~~  232 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAEHFKNIPE--TKYNEEVIQFCLIGRPNVGKSSLVNAMLG-----------EERVIVSNVAGTTRD  232 (456)
T ss_dssp             TTTCTTHHHHHHHHHTTGGGSCS--SCCCTTCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECC------C
T ss_pred             cccccchHHHHHHHHhhcccccc--cccccccceeEEecCCCCCHHHHHHHHhC-----------CCccccCCCCCeEEE
Confidence            99999999999998776543110  11234578999999999999999999983           445788999999998


Q ss_pred             eEE--EEEccCCCEEEEeCCCCCCCC
Q 022351          191 IYS--LKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       191 ~~~--~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ...  +.. .+..+.|+||||+....
T Consensus       233 ~~~~~~~~-~~~~~~l~DT~G~~~~~  257 (456)
T 4dcu_A          233 AVDTSFTY-NQQEFVIVDTAGMRKKG  257 (456)
T ss_dssp             TTSEEEEE-TTEEEEETTGGGTTTBT
T ss_pred             EEEEEEEE-CCceEEEEECCCCCcCc
Confidence            753  333 33368999999987643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.81  E-value=2.2e-20  Score=173.01  Aligned_cols=171  Identities=22%  Similarity=0.217  Sum_probs=112.4

Q ss_pred             cceecccCCCccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCC---CCCCcEEEEEecCCCCChhh-
Q 022351           16 GTAVSQKKGGGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP---FSSSRRILVLNKMDLASPTQ-   91 (298)
Q Consensus        16 g~~~~~~~~~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~-   91 (298)
                      |.+.--+++.+.+...-  .....+..++++|.|++| |++.|..+.+ .+.+++.   ..+++++||+||+||++++. 
T Consensus       103 ~~I~~i~~R~~~l~R~~--~~~~~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~  178 (358)
T 2rcn_A          103 GIVEAVHERTSVLTRPD--FYDGVKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGM  178 (358)
T ss_dssp             EEEEEECCCSCEEEEC-------CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHH
T ss_pred             ceEeEEeCCcCcccCcc--hhhHHHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhH
Confidence            44555566666664421  112344568999999965 6777766655 4544431   25789999999999998764 


Q ss_pred             --HHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcc-h
Q 022351           92 --FKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGR-I  168 (298)
Q Consensus        92 --~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~-~  168 (298)
                        ++.|..+|+..|++++++|+.++.|+++|...+                .+-.++++|.||||||||+|.|.+... .
T Consensus       179 ~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~----------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~  242 (358)
T 2rcn_A          179 DFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL----------------TGRISIFAGQSGVGKSSLLNALLGLQNEI  242 (358)
T ss_dssp             HHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH----------------TTSEEEEECCTTSSHHHHHHHHHCCSSCC
T ss_pred             HHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc----------------CCCEEEEECCCCccHHHHHHHHhcccccc
Confidence              667999998889999999999999999877643                123789999999999999999985221 0


Q ss_pred             hhhhcCCccceeecCCCC----eeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351          169 TAAEKGKLRHATVSPQPG----ETKDIYSLKIASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       169 ~~~~~~~~~~~~~~~~pg----~T~~~~~~~~~~~~~~~liDTPGi~~~~~~  216 (298)
                              ....++..+|    +|+......+..  +..++||||+....+.
T Consensus       243 --------~~G~I~~~~G~g~~tt~~~~i~~v~q--~~~l~dtpgv~e~~l~  284 (358)
T 2rcn_A          243 --------LTNDVSNVSGLGQHTTTAARLYHFPH--GGDVIDSPGVREFGLW  284 (358)
T ss_dssp             --------CCC-------------CCCEEEECTT--SCEEEECHHHHTCCCC
T ss_pred             --------ccCCccccCCCCccceEEEEEEEECC--CCEecCcccHHHhhhc
Confidence                    0111111112    344444333433  3578999999775443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.78  E-value=1.5e-19  Score=164.29  Aligned_cols=152  Identities=22%  Similarity=0.322  Sum_probs=100.2

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccHHHhcc---CCCCCCcEEEEEecCCCCChhh---HHHHHHHHHccCCCEEEEecC
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFDQLRNH---HPFSSSRRILVLNKMDLASPTQ---FKEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~---l~~~~k~~IiVlNK~DL~~~~~---~~~~~~~~~~~~~~vi~iSa~  112 (298)
                      .+.++.++|++|+|+|++.|..+.+ .+..+   +...+.|+++|+||+||.+...   .++|.+.+... ++++.+||+
T Consensus        78 ~~~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAk  155 (301)
T 1u0l_A           78 TKPHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAK  155 (301)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTT
T ss_pred             eccccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECC
Confidence            3467999999999999998764432 22222   1225799999999999987644   45566666433 789999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcccee-ecCCCCeeeee
Q 022351          113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHAT-VSPQPGETKDI  191 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~-~~~~pg~T~~~  191 (298)
                      ++.|+++++..+.                +-.++++|.||+|||||+|+|.+......     +.... .+.-..+|+..
T Consensus       156 tg~gv~~lf~~l~----------------geiv~l~G~sG~GKSTll~~l~g~~~~~~-----G~i~~~~~~g~~~t~~~  214 (301)
T 1u0l_A          156 TGMGIEELKEYLK----------------GKISTMAGLSGVGKSSLLNAINPGLKLRV-----SEVSEKLQRGRHTTTTA  214 (301)
T ss_dssp             TCTTHHHHHHHHS----------------SSEEEEECSTTSSHHHHHHHHSTTCCCC------------------CCCSC
T ss_pred             CCcCHHHHHHHhc----------------CCeEEEECCCCCcHHHHHHHhcccccccc-----cceecccCCCCCceeee
Confidence            9999999887763                23689999999999999999985321100     00000 00111234333


Q ss_pred             EEEEEccCCCEEEEeCCCCCCCCC
Q 022351          192 YSLKIASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       192 ~~~~~~~~~~~~liDTPGi~~~~~  215 (298)
                      ..+...  ...+++||||+..+.+
T Consensus       215 ~~~~~~--~~g~v~q~p~~~~~~~  236 (301)
T 1u0l_A          215 QLLKFD--FGGYVVDTPGFANLEI  236 (301)
T ss_dssp             CEEECT--TSCEEESSCSSTTCCC
T ss_pred             EEEEcC--CCCEEEECcCCCccCC
Confidence            333332  2468999999987654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.28  E-value=9e-14  Score=128.92  Aligned_cols=155  Identities=18%  Similarity=0.178  Sum_probs=94.4

Q ss_pred             EEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHHc-c-CCCEEEEecCCCcCHHHHHHHHH
Q 022351           50 LEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFDQ-Q-NCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus        50 l~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-~-~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      -.++++..++.+.++.+.+++.  ...++.++++||+|+.++...+.|.++++. . +.....+++..+.+...+.+.+.
T Consensus        62 ~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  141 (357)
T 2e87_A           62 RKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLR  141 (357)
T ss_dssp             HHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555565554421  146778899999999988887888888754 2 33322233333333444433322


Q ss_pred             HHHHhhh-------h-ccCCC-CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351          126 AHVRNLR-------K-SDYDA-SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI  196 (298)
Q Consensus       126 ~~i~~~~-------~-~~~~~-~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~  196 (298)
                      +.-.++.       . ..... .....+++++|.||||||||+|+|.+            ....++..|++|++.....+
T Consensus       142 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~------------~~~~~~~~~~~t~~~~~~~~  209 (357)
T 2e87_A          142 DIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTT------------AKPEIASYPFTTRGINVGQF  209 (357)
T ss_dssp             HTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCS------------SCCEEECCTTCSSCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhC------------CCCccCCCCCeeeceeEEEE
Confidence            2111100       0 00111 24567999999999999999999983            22566778899988765433


Q ss_pred             c-cCCCEEEEeCCCCCCCCCC
Q 022351          197 A-SHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       197 ~-~~~~~~liDTPGi~~~~~~  216 (298)
                      . .+..+.++||||+......
T Consensus       210 ~~~~~~~~l~Dt~G~~~~~~~  230 (357)
T 2e87_A          210 EDGYFRYQIIDTPGLLDRPIS  230 (357)
T ss_dssp             EETTEEEEEEECTTTSSSCST
T ss_pred             EecCceEEEEeCCCccccchh
Confidence            2 2335899999999875443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.28  E-value=2.6e-13  Score=126.44  Aligned_cols=60  Identities=28%  Similarity=0.335  Sum_probs=48.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPP  213 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~  213 (298)
                      ..+|++||.||||||||+|+|.+            ....++++||||+++..-.+ ..+.++.++||||+...
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~------------~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~  132 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTG------------TESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG  132 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHS------------BCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhC------------CCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence            35899999999999999999982            34678999999999874222 23446999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.04  E-value=4.5e-11  Score=99.65  Aligned_cols=117  Identities=14%  Similarity=0.022  Sum_probs=70.2

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++|+|+|+..+.+...     ..+.......+.|+++|+||+|+.+.. ..+...++....
T Consensus        72 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  150 (195)
T 1x3s_A           72 AGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH  150 (195)
T ss_dssp             CSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT
T ss_pred             CCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc
Confidence            444 3344445577899999999999987532211     112222112478999999999996432 123334444456


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSA  157 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSs  157 (298)
                      +.+++.+||+++.|+++++++|.+.+.+....           .--+.+|+||||
T Consensus       151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-----------~~~~~~n~gkSs  194 (195)
T 1x3s_A          151 SMLFIEASAKTCDGVQCAFEELVEKIIQTPGL-----------WESENQNSGPSS  194 (195)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHHHTSGGG-----------TCC---------
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHHhhhhh-----------hcccccCCCCCC
Confidence            77899999999999999999998887652110           112456999997

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.01  E-value=3.3e-10  Score=102.57  Aligned_cols=62  Identities=35%  Similarity=0.569  Sum_probs=48.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ...|+++|.||||||||+|+|++           .+.+.+++.|+||++... +....+.++.++||||+..+.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g-----------~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~   69 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLG-----------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM   69 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----------CceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence            45799999999999999999993           456677889999987653 222334468899999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.01  E-value=3.3e-10  Score=102.82  Aligned_cols=65  Identities=35%  Similarity=0.478  Sum_probs=51.8

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-cc-CCCEEEEeCCCCCCCC
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-AS-HPNIYVLDTPGILPPE  214 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~-~~~~~liDTPGi~~~~  214 (298)
                      ..+...|+++|.||||||||+|+|++           .+...+++.|++|++...... .. +.++.++||||+..+.
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g-----------~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLG-----------TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhC-----------CCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence            35567999999999999999999993           556678999999988764322 22 4478999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.96  E-value=1.1e-09  Score=93.59  Aligned_cols=68  Identities=28%  Similarity=0.382  Sum_probs=53.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc--cCCCEEEEeCCCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA--SHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~liDTPGi~~~~~~~  217 (298)
                      ....+|+++|.+|||||||+|+|++          ....+.++..||+|++...+.+.  .+..+.|+||||+..+....
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~----------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   96 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCN----------QKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG   96 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTT----------CSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC----------CCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh
Confidence            4567999999999999999999983          22246788999999988766553  34579999999988765544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.95  E-value=1.2e-09  Score=97.55  Aligned_cols=61  Identities=26%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE  214 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~  214 (298)
                      .++|+++|.||||||||+|+|++            ....+++.||+|.+.....+. .+..+.++||||+....
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g------------~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~   64 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTG------------SRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT   64 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT------------TCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence            46899999999999999999983            235788999999887643332 34568999999997754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.94  E-value=9.5e-10  Score=97.24  Aligned_cols=59  Identities=29%  Similarity=0.421  Sum_probs=46.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE  214 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~  214 (298)
                      +|+++|.||||||||+|+|.+            ....+++.||+|.+.....+. .+..+.|+||||+....
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g------------~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~   62 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTN------------ANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV   62 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT------------TSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC------------CCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence            789999999999999999983            246788999999876643332 33468999999997754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=94.64  Aligned_cols=67  Identities=27%  Similarity=0.356  Sum_probs=41.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCC--CeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQP--GETKDIYSLKI-ASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~p--g~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~  216 (298)
                      ...++|+++|.+|||||||+|+|++           .. ...+..|  ++|++.....+ ..+..+.|+||||+......
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g-----------~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~   94 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILG-----------RK-VFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP   94 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHT-----------SC-CSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcC-----------CC-cCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence            4568999999999999999999993           11 1233344  67777664333 23346999999999887665


Q ss_pred             Ch
Q 022351          217 DV  218 (298)
Q Consensus       217 ~~  218 (298)
                      +.
T Consensus        95 ~~   96 (239)
T 3lxx_A           95 NA   96 (239)
T ss_dssp             CH
T ss_pred             HH
Confidence            44

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.92  E-value=1.9e-09  Score=89.90  Aligned_cols=65  Identities=29%  Similarity=0.407  Sum_probs=42.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~  216 (298)
                      ....+|+++|.+|||||||+|+|++          ......+++.||+|+....+.+.  .++.++||||+..+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~t~~~~~~~~~--~~~~l~Dt~G~~~~~~~   85 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLIN----------RKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVS   85 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT----------C-------------CCEEEEEET--TTEEEEECCCBCCCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC----------CCCccccCCCCCceeeEEEEEEC--CcEEEEECCCCCccccC
Confidence            4568999999999999999999983          22245677889999888776553  36999999998776544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.92  E-value=2.7e-09  Score=94.72  Aligned_cols=65  Identities=25%  Similarity=0.401  Sum_probs=49.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~  215 (298)
                      ...++|+++|.+|+|||||+|+|++           .....+++.+++|.....+.+. .+..+.|+||||+.....
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~  102 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIG-----------ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY  102 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhC-----------CCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence            3568999999999999999999993           3445677788888776654443 333689999999976543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.91  E-value=1.6e-09  Score=89.36  Aligned_cols=61  Identities=31%  Similarity=0.497  Sum_probs=46.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~  213 (298)
                      ++.+|+++|.||||||||+|+|.+           .....+++.||+|++...  +.+. +..+.++||||+...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~   65 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG-----------REAAIVTDIAGTTRDVLREHIHID-GMPLHIIDTAGLREA   65 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSTTCCCSCEEEEEEET-TEEEEEEECCCCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC-----------CCcceeeCCCCceeceeeEEEEEC-CeEEEEEECCCcccc
Confidence            467999999999999999999983           333456788999987653  3333 335889999998653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.91  E-value=7.1e-10  Score=105.41  Aligned_cols=58  Identities=34%  Similarity=0.472  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.||||||||+|+|.+           .+.+.+++.||+|++.....+ ..+..+.|+||||+..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   61 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVK-----------KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD   61 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence            689999999999999999983           455678999999998764332 2344689999999875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.90  E-value=1.2e-09  Score=96.63  Aligned_cols=65  Identities=31%  Similarity=0.379  Sum_probs=48.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~  215 (298)
                      ...++|+++|.+|||||||+|+|++           ...+.+++.+++|.......+ ..+..+.|+||||+.....
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~   99 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIG-----------EQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY   99 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHT-----------SCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence            3568999999999999999999993           344567788888877664433 2334689999999976543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.89  E-value=2.2e-09  Score=95.76  Aligned_cols=61  Identities=28%  Similarity=0.414  Sum_probs=48.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      .++|+++|.||||||||+|+|.+            ....++++||+|.+.....+..+..+.++||||.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g------------~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~   63 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG------------HNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS   63 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC------------CCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC
Confidence            46899999999999999999983            23467889999987665444334479999999987653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.89  E-value=3.1e-09  Score=93.98  Aligned_cols=63  Identities=32%  Similarity=0.383  Sum_probs=48.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILPPEI  215 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~~~~  215 (298)
                      ..++|+++|.||||||||+|+|.+            ....++.+||+|.+.....+.. +..+.|+||||......
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g------------~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~   67 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY   67 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC------------CCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence            457899999999999999999983            2344788899998876544432 34689999999876543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.88  E-value=8.6e-10  Score=105.89  Aligned_cols=62  Identities=32%  Similarity=0.459  Sum_probs=29.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~~  214 (298)
                      .+++|+++|.||||||||+|+|++           ...+.+++.||||++...  +.+ .+..+.|+||||+..+.
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~  295 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLG-----------QERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG  295 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-----------------------------CEEEEE-TTEEEEEEC--------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch
Confidence            468999999999999999999983           445678899999999863  333 33468999999997643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.87  E-value=5.8e-09  Score=86.55  Aligned_cols=64  Identities=33%  Similarity=0.448  Sum_probs=50.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIH  216 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~  216 (298)
                      ....+|+++|.+|||||||+|+|++           ......++.+|+|+........  .++.++||||+......
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~   84 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFN-----------RKIAFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVS   84 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHT-----------SCCSCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHc-----------CccccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCC
Confidence            3457999999999999999999983           3356678889999887765443  36999999998765443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.85  E-value=2e-09  Score=97.36  Aligned_cols=60  Identities=27%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~  211 (298)
                      +...|+++|.||||||||+|+|++           .+.+.+++.|++|++... +......++.++||||+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g-----------~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLG-----------QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHT-----------CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHC-----------CCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            345899999999999999999993           455667889999986543 222334468899999986

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.85  E-value=2.7e-10  Score=93.96  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=67.6

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEec
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNS  111 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa  111 (298)
                      ....+..+|.+++|+|+..+.+...     ..+.......+.|+++|+||+|+....  ..+...+..+..+.+++.+||
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  150 (181)
T 3t5g_A           71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA  150 (181)
T ss_dssp             CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence            4467889999999999986432211     123333333578999999999996432  123333444456778999999


Q ss_pred             CCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHH
Q 022351          112 HNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSA  157 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSs  157 (298)
                      +++.|++++++.+.+.+...                -|..++||||
T Consensus       151 ~~~~~v~~l~~~l~~~~~~~----------------~~~~~~gkss  180 (181)
T 3t5g_A          151 KENQTAVDVFRRIILEAEKM----------------DGACSQGKSS  180 (181)
T ss_dssp             TSHHHHHHHHHHHHHHHHTC---------------------CCBSC
T ss_pred             CCCCCHHHHHHHHHHHHHHh----------------cCCcccCcCC
Confidence            99999999999998877651                2677888886

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.84  E-value=1.4e-08  Score=86.57  Aligned_cols=93  Identities=11%  Similarity=0.093  Sum_probs=68.4

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHH----HHHHc-------cCCCE
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI----TFFDQ-------QNCPS  106 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~----~~~~~-------~~~~v  106 (298)
                      ........+|++++|+|+..+....+..+..++...++|+++|+||+|+.+........    +.+..       .+.++
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  187 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV  187 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred             HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence            33344566899999999998777666556555544679999999999998765433222    23322       34578


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHh
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++||+++.|+++++++|.+.++.
T Consensus       188 ~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          188 QLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEeecCCCcCHHHHHHHHHHhcCc
Confidence            999999999999999999887754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.84  E-value=9.4e-10  Score=105.75  Aligned_cols=61  Identities=34%  Similarity=0.525  Sum_probs=49.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCC-CC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGIL-PP  213 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~-~~  213 (298)
                      .+++|+++|.||||||||+|+|.+           ...+.+++.||||++...  +.+ .+..+.|+||||+. .+
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~-----------~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~  305 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSET  305 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHH-----------HTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSC
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHC-----------CCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccc
Confidence            357999999999999999999983           345678899999998763  333 34468999999998 54

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.83  E-value=4.9e-09  Score=86.79  Aligned_cols=60  Identities=28%  Similarity=0.382  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~  217 (298)
                      ++|+++|.+|||||||+|+|.+            ....++..||+|.....+.+.   .+.++||||+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~   61 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEWK---NHKIIDMPGFGFMMGLP   61 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS------------CCCSSSSSTTCTTSCEEEEET---TEEEEECCCBSCCTTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC------------cCCccCCCCCccceeEEEecC---CEEEEECCCccccccCC
Confidence            4799999999999999999983            234566778988887766554   69999999987654433

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.82  E-value=6.9e-09  Score=92.79  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ....+|+++|.||||||||+|+|++
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHC
Confidence            3467999999999999999999984

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.82  E-value=7.5e-09  Score=91.86  Aligned_cols=62  Identities=32%  Similarity=0.420  Sum_probs=47.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~~  215 (298)
                      .++|+++|.||||||||+|+|.+            ....++..||+|.+.....+. .+..+.++||||+.....
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~   65 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG------------LRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA   65 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT------------TCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC------------CCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence            46899999999999999999983            233778899999887643332 333589999999987544

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.81  E-value=2.7e-09  Score=86.73  Aligned_cols=101  Identities=12%  Similarity=0.077  Sum_probs=69.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+....+...+..+|++++|+|+..+.+..  ...+..++..   .+.|+++|+||+|+.+.....++.+.+.   
T Consensus        59 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  137 (171)
T 1upt_A           59 GGL-TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA  137 (171)
T ss_dssp             CCC-GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG
T ss_pred             CCC-hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchh
Confidence            444 344444567899999999999998764322  1223333222   5789999999999986543334444332   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                        ..+++++.+||+++.|++++++++.+.+.+
T Consensus       138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          138 LKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence              234478999999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.80  E-value=2e-09  Score=102.16  Aligned_cols=59  Identities=32%  Similarity=0.406  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~  212 (298)
                      .+|+++|.||||||||+|+|.+           .+.+.+++.||+|++.....+. .+..+.|+||||+..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~-----------~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~   63 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAG-----------ERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI   63 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEE-----------EECC-----------CEEEECTTCSSCCEEEC------
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence            4799999999999999999983           4556789999999998765543 345699999999964

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.80  E-value=2.2e-09  Score=89.27  Aligned_cols=101  Identities=17%  Similarity=0.076  Sum_probs=72.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc----HHHhccC-----CCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF----DQLRNHH-----PFSSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~----~~l~~~l-----~~~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      ||+ .+........+..+|++|+|+|+..+....+    ..+..++     ...+.|+++|+||+|+.+....++..+.+
T Consensus        82 ~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  160 (198)
T 3t1o_A           82 PGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV  160 (198)
T ss_dssp             CSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             CCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence            443 4444555678999999999999985422221    1122221     12578999999999997654455555666


Q ss_pred             HccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +..+. +++.+||+++.|+++++++|.+.+.+
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            56677 89999999999999999999887755

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.80  E-value=5.1e-09  Score=86.70  Aligned_cols=101  Identities=11%  Similarity=0.092  Sum_probs=71.2

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+  ..+..++..   .+.|+++|+||+|+.+....++..+.+.   
T Consensus        70 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  148 (186)
T 1ksh_A           70 GGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS  148 (186)
T ss_dssp             CCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh
Confidence            454 5555566678999999999999987643222  122222222   4789999999999976544444444432   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                        ..+++++.+||+++.|++++++++.+.+.+
T Consensus       149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          149 IRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             CCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence              234578999999999999999999887764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.79  E-value=7.2e-09  Score=86.31  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHH-ccCCCEEEEecCCCcCH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFD-QQNCPSFGVNSHNKDNV  117 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~-~~~~~vi~iSa~~~~gi  117 (298)
                      ...+|++++|+|+..+.+..+..+..++...+.|+++|+||+|+.+......    +.+.+. ..+.+++.+||+++.|+
T Consensus       103 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  182 (195)
T 1svi_A          103 REELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGK  182 (195)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTH
T ss_pred             hhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCH
Confidence            3445999999999987666555454554346799999999999987654433    223232 12457899999999999


Q ss_pred             HHHHHHHHHHH
Q 022351          118 KEFLKFLQAHV  128 (298)
Q Consensus       118 ~~L~~~l~~~i  128 (298)
                      ++++++|.+.+
T Consensus       183 ~~l~~~l~~~l  193 (195)
T 1svi_A          183 DEAWGAIKKMI  193 (195)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987665

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.79  E-value=5.6e-09  Score=91.83  Aligned_cols=67  Identities=22%  Similarity=0.243  Sum_probs=46.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCC-eeeeeEEEEE-ccCCCEEEEeCCCCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPG-ETKDIYSLKI-ASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg-~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~~  217 (298)
                      ...++|+++|.+|||||||+|+|++           .....++..|+ +|++.....+ ..+..+.|+||||+.......
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~-----------~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~   88 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR-----------KQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC   88 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT-----------SCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC-----------CCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH
Confidence            3568999999999999999999983           22233444454 6766553222 234469999999998765443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.79  E-value=5.4e-09  Score=85.29  Aligned_cols=59  Identities=29%  Similarity=0.477  Sum_probs=39.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~~  213 (298)
                      ..+++++|.+|||||||+|+|.+            ....++..||+|.+...  +.+. +..+.++||||....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~   63 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSL   63 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC------------CSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC------------CCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccC
Confidence            36899999999999999999983            12335667888776543  3332 346899999998764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.79  E-value=5.9e-09  Score=92.73  Aligned_cols=70  Identities=21%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC---CEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP---NIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~---~~~liDTPGi~~~  213 (298)
                      ...++|+++|.+|+|||||+|+|++.......    .........|+++.+.....+....   .+.|+||||+...
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~   78 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPE----YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA   78 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccC----CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence            34589999999999999999999843211100    0000001133334444333333222   5899999999653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.79  E-value=1.4e-08  Score=84.24  Aligned_cols=93  Identities=14%  Similarity=0.160  Sum_probs=67.4

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHH----HHHHc-cCCCEEEEec
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWI----TFFDQ-QNCPSFGVNS  111 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~----~~~~~-~~~~vi~iSa  111 (298)
                      +........+|+|++|+|+..+.......+..++...+.|+++|+||+|+.+........    +.+.. ...+++.+||
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  175 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS  175 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence            333444566799999999987766555555555444589999999999998765443332    33333 2358999999


Q ss_pred             CCCcCHHHHHHHHHHHHH
Q 022351          112 HNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~  129 (298)
                      +++.|+++++++|.+.+.
T Consensus       176 ~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          176 VTGEGISELLDLISTLLK  193 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999987664

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.78  E-value=3.7e-09  Score=88.31  Aligned_cols=104  Identities=14%  Similarity=0.112  Sum_probs=71.2

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC----------CCCcEEEEEecCCCCChhhHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF----------SSSRRILVLNKMDLASPTQFKE   94 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~----------~~k~~IiVlNK~DL~~~~~~~~   94 (298)
                      |..+.+.+....+...+..+|++|+|+|+..+.+...  ..+..++..          .+.|+++|+||+|+......++
T Consensus        68 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~  147 (199)
T 4bas_A           68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE  147 (199)
T ss_dssp             EEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH
T ss_pred             EECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH
Confidence            4433334455555677999999999999987643211  222332221          2789999999999987633333


Q ss_pred             HHHHH------HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           95 WITFF------DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        95 ~~~~~------~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+.+      +..+++++.+||+++.|++++++.|.+.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          148 LVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             HHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            33322      2345678999999999999999999888765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.78  E-value=6.5e-09  Score=97.67  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=73.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHH----H
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFF----D  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~----~  100 (298)
                      .-||| .+..+.+...+..+|++|+|+|++.+. .....+....+. ...+|+++|+||+|+.+.+......+.+    .
T Consensus        81 DtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           81 DAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             ECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            34777 678888889999999999999999875 322222222211 1346899999999999876444333332    2


Q ss_pred             c---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 Q---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .   .+.+++++||+++.|+++|++.|.+.++.
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            2   14579999999999999999999876643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.77  E-value=4.6e-09  Score=97.22  Aligned_cols=59  Identities=24%  Similarity=0.354  Sum_probs=40.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC----------------CCEEE
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH----------------PNIYV  204 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~----------------~~~~l  204 (298)
                      ++++++|.||||||||+|+|.+           . ...+++.|++|.+..  .+.+.+.                ..+.+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~-----------~-~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~l   70 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTK-----------A-GIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEF   70 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH-----------T-C------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHC-----------C-CCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEE
Confidence            5899999999999999999983           2 266788899988765  2333221                25899


Q ss_pred             EeCCCCCCC
Q 022351          205 LDTPGILPP  213 (298)
Q Consensus       205 iDTPGi~~~  213 (298)
                      +||||+...
T Consensus        71 vDtpGl~~~   79 (363)
T 1jal_A           71 VDIAGLVAG   79 (363)
T ss_dssp             EECCSCCTT
T ss_pred             EECCCCccc
Confidence            999999763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.76  E-value=6.2e-09  Score=86.46  Aligned_cols=104  Identities=10%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD-  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~-  100 (298)
                      |..++..+........+..+|++++|+|+..+.+...  ..+..++..   .+.|+++|+||+|+.+....++..+.+. 
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~  144 (187)
T 1zj6_A           65 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL  144 (187)
T ss_dssp             EECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG
T ss_pred             EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhCh
Confidence            4433334455555677899999999999987643221  222333222   5789999999999976433333334332 


Q ss_pred             ----ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                          ..+++++.+||+++.|+++++++|.+.+..
T Consensus       145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          145 TSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             hhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence                234578999999999999999999877643

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.76  E-value=1.9e-08  Score=96.67  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHc
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQ  101 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~  101 (298)
                      -..||| .+..+.+...+..+|++|+|+|++.+......+...++...+.|.++|+||+|+.+.+..+    +..+++..
T Consensus        78 iDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~  156 (482)
T 1wb1_A           78 VDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS  156 (482)
T ss_dssp             CCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhh
Confidence            345787 6788888999999999999999998655444333223223578889999999998754333    23333433


Q ss_pred             c----CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 Q----NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~----~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .    +.+++++||+++.|+++|++.|.+.++.
T Consensus       157 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          157 THNLKNSSIIPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcccccceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence            3    4589999999999999999999987763

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.75  E-value=8.6e-09  Score=101.06  Aligned_cols=63  Identities=27%  Similarity=0.301  Sum_probs=42.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCe----eeeeEEE--EE--ccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE----TKDIYSL--KI--ASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~----T~~~~~~--~~--~~~~~~~liDTPGi~  211 (298)
                      .+..+|+|+|.||||||||||+|++.           ... . +++|+    |+.+..+  ++  ..+..+.|+||||+.
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~-----------~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGK-----------KKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC-----------SSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCC-----------CCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            45678999999999999999999841           111 1 34444    4443322  11  234569999999999


Q ss_pred             CCCC
Q 022351          212 PPEI  215 (298)
Q Consensus       212 ~~~~  215 (298)
                      .+..
T Consensus       103 ~~~~  106 (592)
T 1f5n_A          103 DVEK  106 (592)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            7654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.74  E-value=1.4e-08  Score=92.11  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHH-hccCCCCCCcEEEEEecCCCC-ChhhHHHHHHHHHc-cC--CCEEEEe
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQL-RNHHPFSSSRRILVLNKMDLA-SPTQFKEWITFFDQ-QN--CPSFGVN  110 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l-~~~l~~~~k~~IiVlNK~DL~-~~~~~~~~~~~~~~-~~--~~vi~iS  110 (298)
                      ...+...+..+|++++|+|+..+.+..+..+ ...+...+.|+++|+||+|+. +........+.+.. .+  .+++++|
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS  162 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS  162 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence            3556678889999999999998776666555 555555679999999999998 56555555555542 33  5799999


Q ss_pred             cCCCcCHHHHHHHHHHHHHh
Q 022351          111 SHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i~~  130 (298)
                      |+++.|+++|++.+.+.+++
T Consensus       163 A~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          163 ALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             TTTTBSHHHHHHHHHHHSCB
T ss_pred             CCCCCCHHHHHHHHHHhCcc
Confidence            99999999999999887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.74  E-value=4.6e-09  Score=103.40  Aligned_cols=131  Identities=13%  Similarity=0.087  Sum_probs=90.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh---hHHHHHHHHHccCC
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT---QFKEWITFFDQQNC  104 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~---~~~~~~~~~~~~~~  104 (298)
                      -||| ..+...+...+..+|.+|+|+|+..+...............+.|+++|+||+|+.+..   ..+++.+.+.-...
T Consensus        78 TPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           78 TPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             CCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred             CCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence            3777 5677778888999999999999988766544332221113578999999999997632   22333333311112


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcC---CCCchHHHHHHHh
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGI---PNVGKSALANSLH  163 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~---~nvGKSsliN~L~  163 (298)
                      +++++||+++.|+++|++.+.+.++...    .....++...++..   +++|+.++++-+-
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~----~~~~~p~~alI~d~~~d~~~G~v~~~rV~s  214 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPPPE----GDPEGPLQALIIDSWFDNYLGVVSLIRIKN  214 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCCCC----CCTTSCCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCCcc----ccccCCceeeeeeccccccccEEEEEEEEe
Confidence            5899999999999999999988765421    11234566666665   8999998887765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.74  E-value=1.7e-08  Score=83.48  Aligned_cols=61  Identities=28%  Similarity=0.445  Sum_probs=45.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      +..+|+++|.+|||||||+|+|.+            ....++..||+|.+.....+. .+..+.++||||....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~   67 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG------------ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL   67 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT------------TCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC------------CCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence            457999999999999999999983            224566778888766543322 2346889999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.74  E-value=1.5e-08  Score=87.29  Aligned_cols=62  Identities=31%  Similarity=0.477  Sum_probs=42.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      ...++|+++|.+|||||||+|+|++           .. ..+++.|++|+++...... ....+.|+||||....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~-----------~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~   89 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR-----------AN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR   89 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT-----------TC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC-----------CC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence            4568999999999999999999983           22 2366788888877643322 2336899999999653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.74  E-value=1.3e-08  Score=82.90  Aligned_cols=61  Identities=28%  Similarity=0.318  Sum_probs=39.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ..++|+++|.+|||||||+|+|.+           .....+.+.+|+|.....+.+.+. ..+.++||||...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   64 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG-----------KQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK   64 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC-----------C-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc-----------CCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence            457999999999999999999983           333445566777765544444332 1478999999755

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.74  E-value=7e-09  Score=83.73  Aligned_cols=100  Identities=15%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+.+..  ...+..++.   ..+.|+++|+||+|+.+....+++.+.+.   
T Consensus        52 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  130 (164)
T 1r8s_A           52 GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS  130 (164)
T ss_dssp             CCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc
Confidence            454 444555667899999999999998763221  122222222   14789999999999976533333433332   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                        ..+++++.+||+++.|++++++++.+.+.
T Consensus       131 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          131 LRHRNWYIQATCATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             CSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             ccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence              12346899999999999999999876653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.73  E-value=4.9e-09  Score=98.40  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE--Ec--------------------c--
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK--IA--------------------S--  198 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~--~~--------------------~--  198 (298)
                      ++|+++|.||||||||+|+|++           .+ +.+++.|+||++.....  +.                    .  
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~-----------~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~   68 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATL-----------VD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGL   68 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTE
T ss_pred             CEEEEECCCCCCHHHHHHHHHC-----------CC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCc
Confidence            3789999999999999999983           23 67889999998765321  10                    1  


Q ss_pred             -CCCEEEEeCCCCCC
Q 022351          199 -HPNIYVLDTPGILP  212 (298)
Q Consensus       199 -~~~~~liDTPGi~~  212 (298)
                       ..++.++||||+..
T Consensus        69 ~~~~i~lvDtpG~~~   83 (397)
T 1wxq_A           69 ALIPVKMVDVAGLVP   83 (397)
T ss_dssp             EEEEEEEEECC----
T ss_pred             ceEEEEEEECCCccc
Confidence             12588999999964

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.73  E-value=3.8e-08  Score=83.62  Aligned_cols=105  Identities=14%  Similarity=0.057  Sum_probs=72.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCCC----CCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHPF----SSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~~----~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|......+........+..+|++|+|+|+..+.+..+ ..+...+..    .+.|+++|+||+|+.+...  .+...++
T Consensus        88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  167 (217)
T 2f7s_A           88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL  167 (217)
T ss_dssp             EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence            34433346666777788999999999999986533221 112222211    4689999999999965321  2233333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ....+++++.+||+++.|+++++++|.+.+.+
T Consensus       168 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          168 ADKYGIPYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             HHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44557789999999999999999998877654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.73  E-value=2.4e-09  Score=89.23  Aligned_cols=98  Identities=12%  Similarity=0.090  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC-----CCCcEEEEEecCCCCChhhHHHHHHHHH-----
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF-----SSSRRILVLNKMDLASPTQFKEWITFFD-----  100 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~-----~~k~~IiVlNK~DL~~~~~~~~~~~~~~-----  100 (298)
                      .+........+..+|++++|+|+..+.+...  ..+..++..     .+.|+++|+||+|+......+++.+.+.     
T Consensus        78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~  157 (190)
T 2h57_A           78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK  157 (190)
T ss_dssp             TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC
T ss_pred             HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc
Confidence            3344445577899999999999986522111  222222111     4789999999999976543444444442     


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+++++.+||+++.|+++++++|.+.+.+
T Consensus       158 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          158 DKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             SSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            234578999999999999999999876644

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.72  E-value=9.4e-09  Score=94.88  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-++++.+.+.+.....   .......+|+++|.||||||||+|+|++
T Consensus         9 l~~~~~~l~d~l~~~g~---~~~~~~~~I~vvG~~~~GKSSLln~L~g   53 (353)
T 2x2e_A            9 LIPLVNRLQDAFSAIGQ---NADLDLPQIAVVGGQSAGKSSVLENFVG   53 (353)
T ss_dssp             CHHHHHHHHHHHHTTTC---GGGCCCCEEEEECBTTSSHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHcCC---CCCCCCCeEEEECCCCCCHHHHHHHHhC
Confidence            34455555554443210   1112346999999999999999999984

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.72  E-value=3.7e-09  Score=85.01  Aligned_cols=90  Identities=12%  Similarity=0.116  Sum_probs=66.4

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC-CEEEEecCC
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC-PSFGVNSHN  113 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~-~vi~iSa~~  113 (298)
                      ....+...+..+|++++|+|+..+.......+..++...+.|+++|+||+|+.+...  ...++. ..+. +++.+||++
T Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~~~~~~Sa~~  145 (161)
T 2dyk_A           69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YLGPLY-GLGFGDPIPTSSEH  145 (161)
T ss_dssp             HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GCGGGG-GGSSCSCEECBTTT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hHHHHH-hCCCCCeEEEeccc
Confidence            345566789999999999999987665555555544335799999999999976421  111122 4455 789999999


Q ss_pred             CcCHHHHHHHHHHH
Q 022351          114 KDNVKEFLKFLQAH  127 (298)
Q Consensus       114 ~~gi~~L~~~l~~~  127 (298)
                      +.|++++++++.+.
T Consensus       146 ~~gv~~l~~~l~~~  159 (161)
T 2dyk_A          146 ARGLEELLEAIWER  159 (161)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHh
Confidence            99999999988754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.71  E-value=1.2e-08  Score=86.08  Aligned_cols=62  Identities=29%  Similarity=0.378  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~  213 (298)
                      ..+.+++++|.+|||||||+|+|.+          ......+++.+|+|+....+.+..  ++.++||||+...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g----------~~~~~~~~~~~G~~~~~~~~~~~~--~~~l~Dt~G~~~~   85 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN----------QKSLARTSKTPGRTQLINLFEVAD--GKRLVDLPGYGYA   85 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC----------C-------------CCEEEEEEET--TEEEEECCCCC--
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC----------CCccccccCCCccceeeEEEEecC--CEEEEECcCCccc
Confidence            4678999999999999999999983          222455678889988765554433  6899999998653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.70  E-value=2.9e-09  Score=101.82  Aligned_cols=61  Identities=39%  Similarity=0.567  Sum_probs=43.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccCCCEEEEeCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~~~~~liDTPGi~~~  213 (298)
                      .+++|+++|.||||||||+|+|++           ...+.++..||+|++..  .+.+ ++..+.|+||||+..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~-----------~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~  285 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQ-----------SDRAIVTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRET  285 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHH-----------HHBSCCSCCTTCCHHHHHHEEEE-TTEEEEECC-------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC-----------CCcccccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccc
Confidence            467999999999999999999983           34566888999999875  3333 3346899999999764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.69  E-value=2.3e-08  Score=82.67  Aligned_cols=101  Identities=16%  Similarity=0.054  Sum_probs=70.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++|+|+|+..+.+..+ ..    +.......+.|+++|+||+|+.+..  ..+...++...
T Consensus        78 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  156 (195)
T 3bc1_A           78 AGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK  156 (195)
T ss_dssp             CCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            454 4555667788999999999999986533222 11    2222112578999999999997532  12233333334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++.|++++++.|.+.+.+
T Consensus       157 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          157 YGIPYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999877654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.69  E-value=1.5e-08  Score=93.96  Aligned_cols=58  Identities=26%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             ceE-EEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          142 TVT-VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~-i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      ++. ++++|.||||||||+|+|.+            ....+++.|++|++...  +.+.+ ..+.++||||+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~------------~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~  238 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTG------------LTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIR  238 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHC------------C-----------CCSCEEEEEETT-EEEEEEECCCBCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC------------CCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchh
Confidence            444 99999999999999999983            22456788899987753  33433 4688999999855

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=95.55  Aligned_cols=63  Identities=25%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEE--EEcc----------------CCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSL--KIAS----------------HPN  201 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~--~~~~----------------~~~  201 (298)
                      ..+.+++++|.||||||||+|+|.+           .+ ..+++.|++|.++...  .+.+                ...
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg-----------~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~   87 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTN-----------SQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAF   87 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC-----------CC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccc
Confidence            4567999999999999999999983           22 3778999999876532  2221                124


Q ss_pred             EEEEeCCCCCCCC
Q 022351          202 IYVLDTPGILPPE  214 (298)
Q Consensus       202 ~~liDTPGi~~~~  214 (298)
                      +.++||||+....
T Consensus        88 i~lvDtpGl~~~a  100 (396)
T 2ohf_A           88 LNVVDIAGLVKGA  100 (396)
T ss_dssp             EEEEECCC-----
T ss_pred             cEEEECCCccccc
Confidence            8999999998643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.68  E-value=1.6e-08  Score=81.84  Aligned_cols=59  Identities=29%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~  212 (298)
                      .++|+++|.+|||||||+|+|.+           .....+++.+|+|.... +.+.. ...+.++||||...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~   61 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG-----------VEDGPEAEAAGHTYDRS-IVVDGEEASLMVYDIWEQDG   61 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC-----------C----------CEEEEE-EEETTEEEEEEEEECC----
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC-----------ccccCCCCccccceEEE-EEECCEEEEEEEEECCCCcc
Confidence            36899999999999999999982           34456677788887533 22322 12478999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.68  E-value=4.6e-08  Score=88.19  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+|+++|.+|||||||+|+|++
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g   46 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVG   46 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHC
Confidence            456899999999999999999985

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.67  E-value=1.5e-08  Score=81.34  Aligned_cols=60  Identities=35%  Similarity=0.520  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPP  213 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~  213 (298)
                      .+|+++|.+|||||||+|+|.+           .....++..|++|.+.....+. .+..+.++||||....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   62 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK-----------KRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG   62 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH-----------CCC-----------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc
Confidence            4799999999999999999983           2334466778888776644332 2336899999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.67  E-value=1.5e-08  Score=83.98  Aligned_cols=103  Identities=15%  Similarity=0.084  Sum_probs=68.3

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD-  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~-  100 (298)
                      |..+++.+.......++..+|++++|+|+..+.+...  ..+..++..   .+.|+++|+||+|+.+....++..+.+. 
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  144 (181)
T 1fzq_A           65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL  144 (181)
T ss_dssp             EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCc
Confidence            4433334444556678899999999999986533221  223333322   5789999999999976543344433331 


Q ss_pred             ----ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                          ..+.+++.+||+++.|++++++++.+.+.
T Consensus       145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred             hhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence                12346899999999999999999876543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.67  E-value=2.4e-08  Score=83.06  Aligned_cols=99  Identities=21%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+....+...+..+|++++|+|+..+.+...  ..+..++..   .+.|+++|+||+|+.+....+++.+.+.   
T Consensus        75 ~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~  153 (188)
T 1zd9_A           75 GGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA  153 (188)
T ss_dssp             CCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh
Confidence            454 5556666778899999999999986532221  122233222   5789999999999976533334444332   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                        ..+.+++.+||+++.|+++++++|.+.+
T Consensus       154 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          154 IQDREICCYSISCKEKDNIDITLQWLIQHS  183 (188)
T ss_dssp             CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             hccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence              1234689999999999999999987654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.67  E-value=1e-08  Score=84.42  Aligned_cols=101  Identities=11%  Similarity=0.063  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+.+...  ..+..++.   ..+.|+++|+||+|+.+....+++.+.+.   
T Consensus        70 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~  148 (183)
T 1moz_A           70 GGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE  148 (183)
T ss_dssp             C-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT
T ss_pred             CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence            444 3444445577899999999999987643221  22333332   25789999999999976533344444332   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                        ..+++++.+||+++.|++++++++.+.+.+
T Consensus       149 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          149 LKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence              123468999999999999999999887765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.67  E-value=5e-09  Score=86.67  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+.+...  ..+..++.   ..+.|+++|+||+|+......+++.+.+.   
T Consensus        73 ~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~  151 (181)
T 2h17_A           73 GGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS  151 (181)
T ss_dssp             SSS-GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccc
Confidence            344 3344445577899999999999987643221  12333322   25789999999999976433333333331   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                        ..+++++.+||+++.|+++++++|.+
T Consensus       152 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          152 IKDHQWHIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             CCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred             ccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence              23447899999999999999998853

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.66  E-value=3.5e-08  Score=79.82  Aligned_cols=61  Identities=21%  Similarity=0.322  Sum_probs=43.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      +.++|+++|.+|||||||+|+|.+          ........+.+|++.....+.+... ..+.++||||..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   66 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVE----------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE   66 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc----------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence            457999999999999999999984          1222344566777766555544322 258899999974

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.66  E-value=1.1e-08  Score=84.26  Aligned_cols=98  Identities=20%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----cHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCC
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSE-----FDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCP  105 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-----~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~  105 (298)
                      .+........+..+|++++|+|+..+.+..     ...+.......+.|+++|+||+|+.+..  ..+...+..+..+.+
T Consensus        77 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  156 (183)
T 3kkq_A           77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP  156 (183)
T ss_dssp             GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe
Confidence            334444456677899999999998752211     1122222223578999999999997532  122223333344678


Q ss_pred             EEEEecC-CCcCHHHHHHHHHHHHHh
Q 022351          106 SFGVNSH-NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       106 vi~iSa~-~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.+||+ ++.|++++++.|.+.+.+
T Consensus       157 ~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          157 YIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            9999999 999999999999877643

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.65  E-value=2.1e-08  Score=83.49  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+...     ..+.... ..+.|+++|+||+|+.+...  .....+....
T Consensus        73 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  150 (196)
T 3tkl_A           73 AGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS  150 (196)
T ss_dssp             CCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            454 4444556678899999999999986432111     1122221 24789999999999975432  2233333445


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|+++++++|.+.+.+
T Consensus       151 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          151 LGIPFLETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             TTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            67799999999999999999999888766

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.65  E-value=1.3e-08  Score=95.19  Aligned_cols=63  Identities=21%  Similarity=0.324  Sum_probs=48.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEcc----------------CCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIAS----------------HPN  201 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~----------------~~~  201 (298)
                      ..+.+++++|.||||||||+|+|.+           ...+.+++.|+||+++..  +.+.+                +..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg-----------~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~   86 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK-----------SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF   86 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH-----------STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC-----------CCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc
Confidence            4578999999999999999999983           334478999999988653  33332                014


Q ss_pred             EEEEeCCCCCCC
Q 022351          202 IYVLDTPGILPP  213 (298)
Q Consensus       202 ~~liDTPGi~~~  213 (298)
                      ++++||||+...
T Consensus        87 i~lvD~pGl~~~   98 (392)
T 1ni3_A           87 LTVFDIAGLTKG   98 (392)
T ss_dssp             EEEECTGGGCCC
T ss_pred             eEEEeccccccC
Confidence            799999998763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.64  E-value=2.6e-08  Score=81.62  Aligned_cols=101  Identities=11%  Similarity=0.034  Sum_probs=65.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~  100 (298)
                      .||+ .+....+...+..+|++++|+|+..+.+..+     ..+.... ..+.|+++|+||+|+.+..  ..+...+..+
T Consensus        67 t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  144 (180)
T 2g6b_A           67 TAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK  144 (180)
T ss_dssp             CCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHH
Confidence            3555 4555566778999999999999987533211     1122221 2578999999999997532  1222333333


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+++++.+||+++.|++++++++.+.+.+
T Consensus       145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          145 EYGLPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.64  E-value=1.1e-08  Score=85.76  Aligned_cols=99  Identities=11%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|++++|+|+..+.+-..  ..+..++..   .+.|+++|+||+|+.+....+++.+.+.   
T Consensus        81 ~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~  159 (192)
T 2b6h_A           81 GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH  159 (192)
T ss_dssp             C------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence            444 4454555667889999999999987632211  222222221   4789999999999976533344444332   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                        ..+++++.+||+++.|+++++++|.+.+
T Consensus       160 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          160 LRSRTWYVQATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             CSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred             ccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence              1234689999999999999999987654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.64  E-value=1.7e-08  Score=81.37  Aligned_cols=100  Identities=18%  Similarity=0.043  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|.+++|+|+..+.+...     ..+.......+.|+++|+||+|+.+..  ..++..+....
T Consensus        60 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  138 (168)
T 1u8z_A           60 AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ  138 (168)
T ss_dssp             CC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH
Confidence            454 4455556677889999999999986532111     112222222479999999999996532  12333444444


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.+++.+||+++.|++++++++.+.+.
T Consensus       139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          139 WNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             HTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.63  E-value=1.7e-08  Score=82.42  Aligned_cols=98  Identities=15%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-H----HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-Q----LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~----l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+. .    +... ...+.|+++|+||+|+.+..  ..++..++.+.
T Consensus        72 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  149 (179)
T 1z0f_A           72 AGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE  149 (179)
T ss_dssp             TTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            554 44445566778899999999999875322211 1    2222 12578999999999996432  12334444455


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+.+++.+||+++.|++++++++.+.+
T Consensus       150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          150 NGLLFLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            677899999999999999999887654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.62  E-value=5.3e-09  Score=86.91  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=64.7

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH-----ccCCCEEE
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD-----QQNCPSFG  108 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~  108 (298)
                      ....+..+|++++|+|+..+.+...  ..+..++.   ..+.|+++|+||+|+.+....+++.+.+.     ..+++++.
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK  162 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence            3456889999999999987643221  22333322   24789999999999976533333333321     22446899


Q ss_pred             EecCCCcCHHHHHHHHHHHHHh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +||+++.|++++++++.+.+.+
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          163 SSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHh
Confidence            9999999999999999888765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.62  E-value=5e-08  Score=81.25  Aligned_cols=105  Identities=12%  Similarity=0.054  Sum_probs=71.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..+...+........+..+|++++|+|+..+.+... ..+...+   ...+.|+++|+||+|+.+..  ..+......
T Consensus        76 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  155 (191)
T 3dz8_A           76 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLA  155 (191)
T ss_dssp             EECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH
Confidence            45554446666777788999999999999986422111 1111111   12478999999999996432  112222233


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+.+++.+||+++.|++++++.|.+.+.+
T Consensus       156 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          156 EQLGFDFFEASAKENISVRQAFERLVDAICD  186 (191)
T ss_dssp             HHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3456789999999999999999999887755

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.61  E-value=4.8e-08  Score=78.86  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      .++|+++|.+|||||||+|+|++          ........+.+|.+.....+.+... ..+.++||||..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   63 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVS----------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence            46899999999999999999984          1112223455566555555544322 258899999953

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.61  E-value=1.6e-08  Score=81.38  Aligned_cols=100  Identities=18%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|.+++|+|+..+.+...     ..+.......+.|+++|+||+|+.+...  .+...+....
T Consensus        59 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  137 (167)
T 1kao_A           59 AGT-EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE  137 (167)
T ss_dssp             CCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCc-hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH
Confidence            444 3334445567788999999999986532111     1233333335799999999999865322  2222333334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.+++.+||+++.|+++++++|.+.+.
T Consensus       138 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          138 WGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            5778999999999999999999987664

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.59  E-value=1e-07  Score=89.62  Aligned_cols=101  Identities=21%  Similarity=0.319  Sum_probs=66.1

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccH-HHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFD-QLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~  101 (298)
                      .||| .++.+.+...+..+|++|+|+|++.+. ..... .+..+.....+|+++++||+|+.+.+    ..++..+++..
T Consensus        88 tPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~  166 (408)
T 1s0u_A           88 SPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG  166 (408)
T ss_dssp             CSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred             CCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence            3787 677888888899999999999999764 22222 22111112346899999999998653    23444445432


Q ss_pred             ---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                         .+.+++++||+++.|+++|+++|.+.++
T Consensus       167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          167 TIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence               3568999999999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.59  E-value=5.9e-08  Score=78.36  Aligned_cols=105  Identities=19%  Similarity=0.079  Sum_probs=59.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|......+........+..+|++++|+|+..+.+...  .   .+.......+.|+++|+||+|+.+...  .+.....
T Consensus        53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  132 (166)
T 3q72_A           53 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC  132 (166)
T ss_dssp             EEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH
T ss_pred             EEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH
Confidence            34433335555566677899999999999986532111  1   122221225789999999999975432  2222233


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ....+.+++.+||+++.|++++++.+.+.+.+
T Consensus       133 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          133 AVVFDCKFIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             HHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            33456789999999999999999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.59  E-value=2e-08  Score=82.57  Aligned_cols=101  Identities=17%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|.+++|+|+..+.....     ..+.......+.|+++|+||+|+.+..  ..++..+..+.
T Consensus        74 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  152 (187)
T 2a9k_A           74 AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ  152 (187)
T ss_dssp             CCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCC-cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH
Confidence            454 3344455567788999999999986532111     122222222478999999999996532  23344445555


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|+++++++|.+.+.+
T Consensus       153 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          153 WNVNYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            67789999999999999999999887765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.59  E-value=5.9e-08  Score=80.94  Aligned_cols=62  Identities=24%  Similarity=0.282  Sum_probs=45.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|++          ........+.+|+|.....+.+.. ...+.++||||..
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   83 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQ----------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE   83 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH----------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhc----------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence            4568999999999999999999984          122234567778877666554432 2258899999953

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.58  E-value=1.6e-08  Score=82.80  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-------C--CCEEEE
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-------N--CPSFGV  109 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-------~--~~vi~i  109 (298)
                      ....+..+|++++|+|+..+...........+...+.|+++|+||+|+.+.. .+.....+...       +  .+++.+
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (178)
T 2lkc_A           72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKL  150 (178)
T ss_dssp             CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEEC
T ss_pred             HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEE
Confidence            3456889999999999987654443333332223578999999999997642 12222222211       1  368999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||+++.|+++++++|.+.+..
T Consensus       151 Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          151 SAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHhhhh
Confidence            999999999999999887765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.58  E-value=8.4e-08  Score=86.68  Aligned_cols=94  Identities=17%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCC--CCcEEEEEecCCCCChhh-HHHHHHHHHccCCCEEEEec
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFS--SSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPSFGVNS  111 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~--~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~iSa  111 (298)
                      .......++..+|++++|+|+..+....+..+.+.+...  +.|+++|+||+|+.+... +.+..+.+ ....+++++||
T Consensus        76 ~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA  154 (301)
T 1wf3_A           76 MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSA  154 (301)
T ss_dssp             HHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeC
Confidence            345667889999999999999987665555444333323  799999999999986554 44444443 12236899999


Q ss_pred             CCCcCHHHHHHHHHHHHH
Q 022351          112 HNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~  129 (298)
                      +++.|++++++.+.+.++
T Consensus       155 ~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          155 LDERQVAELKADLLALMP  172 (301)
T ss_dssp             TCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhcc
Confidence            999999999999876543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.57  E-value=5e-08  Score=81.11  Aligned_cols=83  Identities=20%  Similarity=0.342  Sum_probs=45.4

Q ss_pred             CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE
Q 022351          113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY  192 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~  192 (298)
                      ....+..+.+.+.+.+.....   ......++|+++|.+|||||||+|+|.+.         ......++..|++|.+. 
T Consensus        22 ~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~i~vvG~~g~GKSsll~~l~~~---------~~~~~~~~~~~~~~~~~-   88 (193)
T 2ged_A           22 NKRKISQWREWIDEKLGGGSG---GGGSYQPSIIIAGPQNSGKTSLLTLLTTD---------SVRPTVVSQEPLSAADY-   88 (193)
T ss_dssp             TTTBCHHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHHHS---------SCC------------CC-
T ss_pred             HHHHHHHHHHHHHHHHHhhcC---CCCCCCCEEEEECCCCCCHHHHHHHHhcC---------CCCcccccCCCceeeee-
Confidence            344566677666655543211   12245689999999999999999999841         11122233445554432 


Q ss_pred             EEEEccCCCEEEEeCCCCCCC
Q 022351          193 SLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       193 ~~~~~~~~~~~liDTPGi~~~  213 (298)
                           ....+.++||||....
T Consensus        89 -----~~~~~~l~Dt~G~~~~  104 (193)
T 2ged_A           89 -----DGSGVTLVDFPGHVKL  104 (193)
T ss_dssp             -----CCTTCSEEEETTCCBS
T ss_pred             -----cCCeEEEEECCCCchH
Confidence                 2346889999998654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.57  E-value=7.4e-08  Score=78.70  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           .. ......|++|.+..  .+.+.+. ..+.++||||...
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   70 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD-----------NT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER   70 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS-----------CC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc-----------CC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence            4568999999999999999999983           11 22334455554443  3333221 2488999999543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.57  E-value=7e-08  Score=80.11  Aligned_cols=99  Identities=23%  Similarity=0.207  Sum_probs=65.7

Q ss_pred             hhhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351           29 GPHMAAAT-RAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD  100 (298)
Q Consensus        29 pghm~~~~-~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~  100 (298)
                      ||+ .+.. ......+..+|++|+|+|+..+.+...     ..+...+...+.|+++|+||+|+.+...  .+...++..
T Consensus        77 ~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  155 (189)
T 1z06_A           77 AGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD  155 (189)
T ss_dssp             CCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             CCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH
Confidence            555 4444 456677899999999999986432111     2233333345799999999999965321  222223333


Q ss_pred             ccCCCEEEEecCCC---cCHHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNK---DNVKEFLKFLQAHV  128 (298)
Q Consensus       101 ~~~~~vi~iSa~~~---~gi~~L~~~l~~~i  128 (298)
                      ..+++++.+||+++   .|++++++.|.+.+
T Consensus       156 ~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          156 THSMPLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             HTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             HcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            45778999999999   99999998886554

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.57  E-value=8.8e-08  Score=90.09  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=72.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHH-HhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQ-LRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~-l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~  100 (298)
                      ..||| .++...+...+..+|++|+|+|++.+. .....+ +..+.....+|+++|+||+|+.+.+.    .+++.+++.
T Consensus        89 DtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  167 (410)
T 1kk1_A           89 DAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE  167 (410)
T ss_dssp             ECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ECCCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence            34787 677888888899999999999999764 222222 21111113468899999999987643    233444443


Q ss_pred             c---cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 Q---QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~---~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .   .+.+++++||+++.|+++|+++|.+.++.
T Consensus       168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          168 GTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            2   35689999999999999999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.57  E-value=7.8e-08  Score=81.04  Aligned_cols=100  Identities=13%  Similarity=0.041  Sum_probs=69.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++|+|+|+..+.+...  .   .+.... ..+.|+++|+||+|+.+..  ..++..+....
T Consensus        86 ~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  163 (201)
T 2hup_A           86 AGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH  163 (201)
T ss_dssp             TTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence            454 4555566778999999999999986532111  1   122211 2568999999999997531  12333344445


Q ss_pred             cCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNC-PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .++ +++.+||+++.|+++++++|.+.+.+
T Consensus       164 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          164 YDILCAIETSAKDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            677 88999999999999999999887765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.57  E-value=3e-08  Score=82.47  Aligned_cols=101  Identities=14%  Similarity=0.068  Sum_probs=68.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH-HhccCCCCCCcEEEEEecCCCCCh-hhHHHHHHHHHccCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ-LRNHHPFSSSRRILVLNKMDLASP-TQFKEWITFFDQQNCP  105 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~-l~~~l~~~~k~~IiVlNK~DL~~~-~~~~~~~~~~~~~~~~  105 (298)
                      ||+ .+........+..+|++++|+|+..+.+... .. +..+....+.|+++|+||+|+... ...++..++++..+.+
T Consensus       101 ~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~  179 (208)
T 3clv_A          101 AGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL  179 (208)
T ss_dssp             TTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE
T ss_pred             CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc
Confidence            554 3444456677899999999999987633221 11 122211145999999999994321 2234455555566788


Q ss_pred             EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          106 SFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       106 vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.+||+++.|+++++++|.+.+.+
T Consensus       180 ~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          180 FIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.57  E-value=5.4e-08  Score=80.09  Aligned_cols=100  Identities=11%  Similarity=0.017  Sum_probs=58.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+... .    .+... ...+.|+++|+||+|+.+..  ..+...++.+.
T Consensus        65 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  142 (183)
T 2fu5_C           65 AGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALD  142 (183)
T ss_dssp             ----------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH
T ss_pred             CCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHH
Confidence            554 4555555677899999999999987532111 1    11111 12478999999999997532  12233333344


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++.|++++++.|.+.+.+
T Consensus       143 ~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          143 YGIKFMETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             HTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999877655

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.57  E-value=3.2e-08  Score=81.58  Aligned_cols=101  Identities=19%  Similarity=0.099  Sum_probs=67.2

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhH-HHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQF-KEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|.+++|+|+..+.+...     ..+.......+.|+++|+||+|+.+.... +...+.....
T Consensus        60 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  138 (189)
T 4dsu_A           60 AGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY  138 (189)
T ss_dssp             CCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc
Confidence            444 4444455567788999999999986532111     12223333357999999999999754322 2222233345


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+++.+||+++.|+++++++|.+.+.+
T Consensus       139 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          139 GIPFIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999887764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.57  E-value=9.3e-08  Score=77.14  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      ..++|+++|.+|||||||+|+|++          ........+..|++.....+.+.. ...+.++||||..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   66 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK----------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            457999999999999999999984          111122334556655554444432 2258899999954

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.56  E-value=1.1e-07  Score=78.90  Aligned_cols=101  Identities=17%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++++|+|+.++.+..+     ..+..+....+.|+++|+||+|+.+.. ..+...+..+..
T Consensus        77 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  155 (190)
T 3con_A           77 AGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY  155 (190)
T ss_dssp             CC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH
T ss_pred             CCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHc
Confidence            454 5555666678999999999999986532111     112222222478999999999997532 222333333445


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++++.+||+++.|+++++++|.+.+.+
T Consensus       156 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          156 GIPFIETSAKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999887765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.56  E-value=2.9e-08  Score=83.78  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++++|+|+..+.+...  .   .+.... ..+.|+++|+||+|+..... .+...++....
T Consensus        77 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  154 (213)
T 3cph_A           77 AGQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKEL  154 (213)
T ss_dssp             TTG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHc
Confidence            554 3344445577899999999999986532111  1   112211 23689999999999953321 12222233345


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      +++++.+||+++.|+++++++|.+.+.+.
T Consensus       155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          155 GIPFIESSAKNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             TCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            67899999999999999999998877653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.56  E-value=5.1e-08  Score=88.20  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE--EccCCCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK--IASHPNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~--~~~~~~~~liDTPGi~  211 (298)
                      .++|+++|.||||||||+|++++           +....++..+|+|.+.....  +.+...+.++||||..
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~-----------~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~   63 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFS-----------NYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD   63 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHS-----------CCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh-----------CCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence            57899999999999999999983           33344566788888776433  3234468899999964

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.56  E-value=1.7e-08  Score=92.89  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=44.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.||||||||||+|..            ....++.+|++|.....  +.+.....+.|+||||+..
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~------------~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSS------------AKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE  218 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE------------ECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHc------------CCCccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence            689999999999999999982            23467889999987663  3344335799999999754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.56  E-value=3.6e-08  Score=82.68  Aligned_cols=105  Identities=17%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCC--CCCCcEEEEEecCCCCC-hhh--HHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHP--FSSSRRILVLNKMDLAS-PTQ--FKEW   95 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~--~~~k~~IiVlNK~DL~~-~~~--~~~~   95 (298)
                      -|..++..+........+..+|++|+|+|+..+.+... ..    +.....  ..+.|+++|+||+|+.+ ...  .+..
T Consensus        77 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~  156 (208)
T 2yc2_C           77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA  156 (208)
T ss_dssp             EEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHH
T ss_pred             EEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHH
Confidence            34443335666667788999999999999987532111 11    111111  14789999999999976 221  2334


Q ss_pred             HHHHHccCCCEEEEecCC-CcCHHHHHHHHHHHHHh
Q 022351           96 ITFFDQQNCPSFGVNSHN-KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        96 ~~~~~~~~~~vi~iSa~~-~~gi~~L~~~l~~~i~~  130 (298)
                      .++.+..+.+++.+||++ +.|+++++++|.+.+.+
T Consensus       157 ~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             HHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence            444445677899999999 99999999998876654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.56  E-value=7.3e-08  Score=77.91  Aligned_cols=59  Identities=22%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      .++|+++|.+|||||||+|+|++           .+ ......|.++.+..  .+.+... -.+.++||||...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~   64 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE-----------DK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER   64 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH-----------CC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh-----------CC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence            47899999999999999999984           11 11223333343333  2322221 1478999999643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.55  E-value=2.1e-08  Score=84.41  Aligned_cols=100  Identities=12%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--cHHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE--FDQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFDQ  101 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~--~~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~  101 (298)
                      |..+...+.......++..+|.+++|+|+..+.+..  ...+..++.   ..+.|+++|+||+|+......++..+.+..
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  153 (198)
T 1f6b_A           74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGL  153 (198)
T ss_dssp             EEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred             EECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCc
Confidence            443333444444556788999999999998753221  112222222   257899999999999753223333333321


Q ss_pred             -----------------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          102 -----------------QNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       102 -----------------~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                                       .+.+++.+||+++.|+++++++|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             TTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             ccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence                             2336899999999999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.55  E-value=4.1e-08  Score=81.99  Aligned_cols=100  Identities=14%  Similarity=0.059  Sum_probs=67.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++|+|+|+..+.+..+     ..+... ...+.|+++|+||+|+.+...  .+...++.+.
T Consensus        83 ~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~  160 (192)
T 2il1_A           83 AGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ  160 (192)
T ss_dssp             CCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred             CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence            443 4445556677889999999999987543222     112222 124789999999999965321  2222333333


Q ss_pred             -cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 -QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 -~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                       .+.+++.+||+++.|++++++.|.+.+.+
T Consensus       161 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          161 ITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             STTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             26688999999999999999999876643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.55  E-value=1.1e-07  Score=77.83  Aligned_cols=62  Identities=21%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           .........|.++.+...  +.+... ..+.++||||...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   72 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKD-----------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER   72 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh-----------CCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            4568999999999999999999984           222222333444444332  223221 1588999999643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.55  E-value=8.7e-08  Score=78.20  Aligned_cols=61  Identities=28%  Similarity=0.284  Sum_probs=37.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi  210 (298)
                      ...++|+++|.+|||||||+|+|++          ........+..|.+.....+.+... -.+.++||||.
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~   66 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVT----------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ   66 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH----------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence            3468999999999999999999984          1111222233333332333333321 25889999995

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.53  E-value=4.4e-08  Score=79.20  Aligned_cols=101  Identities=17%  Similarity=0.103  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~  101 (298)
                      .||+ .+........+..+|++++|+|+..+.+... ..    +.... ..+.|+++|+||+|+.... ..+...+..+.
T Consensus        59 ~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  136 (170)
T 1g16_A           59 TAGQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKE  136 (170)
T ss_dssp             CTTG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHH
T ss_pred             CCCC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHH
Confidence            3554 3344445567889999999999986532111 11    11211 2478999999999995432 12222333334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++.|++++++.+.+.+.+
T Consensus       137 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          137 LGIPFIESSAKNDDNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999887765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.53  E-value=7.5e-08  Score=91.85  Aligned_cols=93  Identities=12%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc-----cCCCEEEEe
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ-----QNCPSFGVN  110 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~-----~~~~vi~iS  110 (298)
                      ....++..+|++|+|+|+..+....+..+..++...++|+++|+||+|+.+..  ..++..+.+++     .+.+++++|
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  349 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS  349 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence            34457888999999999998877776666555444689999999999998532  22333333322     145899999


Q ss_pred             cCCCcCHHHHHHHHHHHHHh
Q 022351          111 SHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i~~  130 (298)
                      |+++.|++++++.+.+.+..
T Consensus       350 A~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          350 ALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999888765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.53  E-value=5.9e-08  Score=81.29  Aligned_cols=101  Identities=17%  Similarity=0.035  Sum_probs=68.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|.+++|+|+..+.+...     ..+.......+.|+++|+||+|+.+..  ..+...++...
T Consensus        70 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  148 (206)
T 2bov_A           70 AGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ  148 (206)
T ss_dssp             CCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH
Confidence            444 3344455567788999999999986532111     122233223479999999999997532  22334444444


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|+++++++|.+.+.+
T Consensus       149 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          149 WNVNYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             HTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999877755

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.53  E-value=3.6e-08  Score=80.59  Aligned_cols=60  Identities=25%  Similarity=0.372  Sum_probs=40.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      ....+|+++|.+|||||||+|+|.+           . .......|++|.+...  +.+. +..+.++||||...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~   67 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH-----------S-KVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEA   67 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT-----------T-CSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC-----------C-ccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHH
Confidence            4567999999999999999999983           1 1223344555544432  3232 33588999999754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.53  E-value=1.1e-07  Score=95.31  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCe
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGE  187 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~  187 (298)
                      ..+++|+++|.+|+|||||+|+|++           .....++..|+|
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg-----------~~~~~v~~~p~T  103 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIG-----------ENLLPSDVNPCT  103 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHT-----------SSCSCCCCCTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC-----------CCCCCCCCCCCc
Confidence            3578999999999999999999993           344556666666

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.53  E-value=1.4e-07  Score=77.02  Aligned_cols=101  Identities=16%  Similarity=0.037  Sum_probs=62.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccC---CCCCCcEEEEEecCCCCChh---hHHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHH---PFSSSRRILVLNKMDLASPT---QFKEWIT   97 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l---~~~~k~~IiVlNK~DL~~~~---~~~~~~~   97 (298)
                      ||+ .+........+..+|++++|+|+..+.+...     ..+....   ...+.|+++|+||+|+.+..   ..+...+
T Consensus        66 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~  144 (182)
T 1ky3_A           66 AGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE  144 (182)
T ss_dssp             C-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH
T ss_pred             CCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH
Confidence            454 5555666678999999999999986532111     1121111   12578999999999996432   1222223


Q ss_pred             HHH-ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFD-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.. ..+.+++.+||+++.|+++++++|.+.+.+
T Consensus       145 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          145 LAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            332 345689999999999999999999876654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.52  E-value=2e-07  Score=75.69  Aligned_cols=91  Identities=22%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~  112 (298)
                      ...+..+|.+++|+|+..+.+... ..    +.......+.|+++|+||+|+.+...  .+....+....+.+++.+||+
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  151 (175)
T 2nzj_A           72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT  151 (175)
T ss_dssp             HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred             HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence            456888999999999986532111 11    22211124789999999999975421  222222333446789999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q 022351          113 NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.|+++++++|.+.+..
T Consensus       152 ~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          152 LQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999887765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.52  E-value=3.4e-08  Score=79.61  Aligned_cols=91  Identities=20%  Similarity=0.064  Sum_probs=61.5

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc-CCCEEEE
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ-NCPSFGV  109 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~-~~~vi~i  109 (298)
                      .....+..+|.+++|+|+..+.+...     ..+.......+.|+++|+||+|+.+...  .+...+..+.. +.+++.+
T Consensus        67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (167)
T 1c1y_A           67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLES  146 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEEC
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEe
Confidence            34456677999999999986532111     1122222235799999999999965321  22233333333 6789999


Q ss_pred             ecCCCcCHHHHHHHHHHHH
Q 022351          110 NSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i  128 (298)
                      ||+++.|+++++++|.+.+
T Consensus       147 Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          147 SAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            9999999999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.52  E-value=4e-08  Score=91.21  Aligned_cols=59  Identities=29%  Similarity=0.439  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEc--------------------cCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIA--------------------SHP  200 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~--------------------~~~  200 (298)
                      ++++++|.||||||||+|+|.+.            ...++++|++|.+...  +.+.                    ...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~------------~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~   69 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA------------NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPT   69 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH------------HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC------------CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence            46899999999999999999841            2456677777765432  2121                    122


Q ss_pred             CEEEEeCCCCCCC
Q 022351          201 NIYVLDTPGILPP  213 (298)
Q Consensus       201 ~~~liDTPGi~~~  213 (298)
                      .+.++||||+...
T Consensus        70 ~i~lvDtpGl~~~   82 (368)
T 2dby_A           70 HVEFVDIAGLVKG   82 (368)
T ss_dssp             EEEEEECCSCCCC
T ss_pred             eEEEEECCCcccc
Confidence            5899999999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.52  E-value=7.7e-08  Score=82.05  Aligned_cols=63  Identities=14%  Similarity=0.093  Sum_probs=46.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+++.          ........+.+|+|.....+.+... ..+.++||||...
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLT----------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK   76 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHH----------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence            4568999999999999999999762          1234556788888887766555332 2588999999543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.52  E-value=1.2e-07  Score=76.50  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||+|+|.+
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHc
Confidence            468999999999999999999984

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.51  E-value=8.6e-08  Score=78.96  Aligned_cols=100  Identities=17%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+....     .+... ...+.|+++|+||+|+.+..  ...+..+....
T Consensus        67 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  144 (186)
T 2bme_A           67 AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQE  144 (186)
T ss_dssp             CCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            444 44556677889999999999999875332111     11221 13578999999999996432  12333444445


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|++++++.+.+.+.+
T Consensus       145 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          145 NELMFLETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            67789999999999999999998877654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.51  E-value=1.4e-07  Score=76.79  Aligned_cols=59  Identities=19%  Similarity=0.227  Sum_probs=38.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~  211 (298)
                      ..++|+++|.+|||||||+|+|+.           .. ......|.++.+..  .+.+... ..+.++||||..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   74 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY-----------DS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   74 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH-----------SC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc-----------CC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence            358999999999999999999983           11 11222344444433  2333221 258899999954

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.51  E-value=2.1e-07  Score=89.44  Aligned_cols=90  Identities=16%  Similarity=0.223  Sum_probs=66.2

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN  116 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g  116 (298)
                      +.....+..+|++|+|+|+..+.+..+..+.+.+  .++|+++|+||+|+.+....++..+++ ..+.+++.+||+++.|
T Consensus       315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            4445677889999999999887665554454443  478999999999997542233333333 3345899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 022351          117 VKEFLKFLQAHVR  129 (298)
Q Consensus       117 i~~L~~~l~~~i~  129 (298)
                      +++|++.|.+.+.
T Consensus       392 i~eL~~~l~~~~~  404 (482)
T 1xzp_A          392 LEKLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.51  E-value=1.7e-07  Score=77.98  Aligned_cols=63  Identities=17%  Similarity=0.203  Sum_probs=40.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++.          .......+..|++.....+.+.. ...+.++||||...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN----------EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER   86 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS----------CCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence            34689999999999999999999841          11111223334444333333321 22478999999855

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.51  E-value=1.6e-07  Score=76.45  Aligned_cols=62  Identities=21%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|.+          ........+..|.+.....+.+.. ...+.++||||..
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTE----------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE   75 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH----------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence            3468999999999999999999984          111122233344444444444432 1257899999953

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.50  E-value=2.4e-08  Score=83.50  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHHc--
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFDQ--  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~--  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+...  ..+..++.   ..+.|+++|+||+|+......++..+.+..  
T Consensus        75 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~  153 (190)
T 1m2o_B           75 GGH-IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN  153 (190)
T ss_dssp             CCS-GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS
T ss_pred             CCC-HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc
Confidence            444 3333444567899999999999987633211  11222221   257899999999999763333444444321  


Q ss_pred             ----------cCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          102 ----------QNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       102 ----------~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                                .+.+++.+||+++.|+++++++|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          154 TTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             ccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence                      2346899999999999999998853

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.50  E-value=2.8e-08  Score=81.47  Aligned_cols=101  Identities=14%  Similarity=0.016  Sum_probs=68.0

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccC--CCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNHH--PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      .||+ .+........+..+|++++|+|+..+.+... ..+ ..+.  ...+.|+++|+||+|+.+...  .+...++.+.
T Consensus        68 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  146 (181)
T 2efe_B           68 TAGQ-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE  146 (181)
T ss_dssp             CCCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCC-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence            3555 3444455677899999999999986533111 111 1111  124789999999999975422  2344444445


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+++++.+||+++.|+++++++|.+.+.
T Consensus       147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          147 NGLFFMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             TTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6778999999999999999999876543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.50  E-value=2e-07  Score=77.28  Aligned_cols=62  Identities=15%  Similarity=0.172  Sum_probs=41.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~  212 (298)
                      ..++|+++|.+|||||||+|+|++          ........+..|++.....+.... ...+.++||||...
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   83 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYAD----------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER   83 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH----------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc----------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence            358999999999999999999984          111122334445555444443332 22588999999654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.50  E-value=1.4e-07  Score=79.44  Aligned_cols=61  Identities=21%  Similarity=0.236  Sum_probs=38.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           .+ ......|.++.+..  .+.+... ..+.|+||||...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   81 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE-----------DK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER   81 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH-----------CC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh-----------CC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            3468999999999999999999983           11 12223343443333  3333221 2588999999643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.50  E-value=1.4e-07  Score=79.12  Aligned_cols=63  Identities=21%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++          ........+.+|++.....+.+... ..+.|+||||...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~   89 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCK----------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER   89 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHH----------CCCC----------CEEEEEEETTEEEEEEEEECTTCTT
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHh----------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc
Confidence            4568999999999999999999984          1112233444555544444444322 2488999999643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.49  E-value=1.8e-07  Score=75.68  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc
Confidence            3468999999999999999999984

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.49  E-value=1.4e-07  Score=76.31  Aligned_cols=58  Identities=19%  Similarity=0.303  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      .+.++|+++|.+|||||||+|+|..           +......+..|.+.  ..+.+. ...+.++||||..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~~~Dt~G~~   62 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV-----------GEVVTTIPTIGFNV--ETVTYK-NLKFQVWDLGGLT   62 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEE--EEEEET-TEEEEEEEECCCG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCCcCCcCccce--EEEEEC-CEEEEEEECCCCh
Confidence            4568999999999999999999983           22222333333332  223332 3368899999974

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.49  E-value=2.4e-08  Score=81.65  Aligned_cols=95  Identities=23%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i  109 (298)
                      ......+..+|.+++|+|+..+.+...  .   .+.......+.|+++|+||+|+.+...  .+....+....+.+++.+
T Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  151 (181)
T 2fn4_A           72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEA  151 (181)
T ss_dssp             CCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence            334456778999999999986422111  1   121222235789999999999975322  122223333457789999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHhh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      ||+++.|+++++++|.+.+.+.
T Consensus       152 Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          152 SAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998887653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.49  E-value=1.9e-07  Score=74.92  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999999984

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.88  E-value=1.5e-08  Score=85.31  Aligned_cols=101  Identities=15%  Similarity=0.088  Sum_probs=66.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCCC--CCCcEEEEEecCCCCChhhH---------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHPF--SSSRRILVLNKMDLASPTQF---------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~~--~~k~~IiVlNK~DL~~~~~~---------   92 (298)
                      -|..+...+........+..+|++++|+|+..+.+..+.  .+...+..  .+.|+++|+||+|+.+....         
T Consensus        82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~  161 (204)
T 3th5_A           82 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL  161 (204)
Confidence            444444455556666788999999999999876433221  22222222  27899999999999754211         


Q ss_pred             -----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHH
Q 022351           93 -----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        93 -----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                           +...++.+..+. +++.+||+++.|++++++.|.+
T Consensus       162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence                 111122223344 7889999999999999988764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.49  E-value=2.9e-07  Score=87.46  Aligned_cols=94  Identities=15%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCCCh----hhH---
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLASP----TQF---   92 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~----~~~---   92 (298)
                      -||| .++.+.+...+..+|++|+|+|++.+..       ....+....+...+.| +++|+||+|+...    +..   
T Consensus       102 TPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i  180 (439)
T 3j2k_7          102 APGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEEC  180 (439)
T ss_pred             CCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHH
Confidence            3677 7788889999999999999999998653       1222222222234666 8999999999642    112   


Q ss_pred             -HHHHHHHHccC------CCEEEEecCCCcCHHHHHH
Q 022351           93 -KEWITFFDQQN------CPSFGVNSHNKDNVKEFLK  122 (298)
Q Consensus        93 -~~~~~~~~~~~------~~vi~iSa~~~~gi~~L~~  122 (298)
                       ++..++++..+      .+++++||++|.|++++.+
T Consensus       181 ~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          181 KEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             22223333333      4689999999999998544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.48  E-value=1.9e-07  Score=77.56  Aligned_cols=60  Identities=22%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee--EEEEEccC-CCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~--~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|++            ........|++|.+.  ..+.+... ..+.++||||..
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   76 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFAD------------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE   76 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc------------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence            3458999999999999999999983            112223334444333  33434322 248899999954

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.48  E-value=3.5e-07  Score=87.69  Aligned_cols=89  Identities=20%  Similarity=0.266  Sum_probs=64.6

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCc----ccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHcc-CCCEEEEec
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSS----EFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQ-NCPSFGVNS  111 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~----~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~vi~iSa  111 (298)
                      +.....+..+|++++|+|+..+.+.    ....+...+  .++|+++|+||+|+.+......  +.+... ..+++.+||
T Consensus       304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSA  379 (476)
T 3gee_A          304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISA  379 (476)
T ss_dssp             ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBT
T ss_pred             HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEE
Confidence            3345678999999999999987665    333444443  3799999999999987654322  222222 357999999


Q ss_pred             CCCcCHHHHHHHHHHHHH
Q 022351          112 HNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~  129 (298)
                      +++.|+++|+++|.+.+.
T Consensus       380 ktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          380 LNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTBSHHHHHHHHTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999988776

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.48  E-value=7.4e-08  Score=81.10  Aligned_cols=100  Identities=16%  Similarity=0.134  Sum_probs=68.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++|+|+|+..+.+...     ..+.... ..+.|+++|+||+|+.+..  ..+...++...
T Consensus        65 ~G~-~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  142 (206)
T 2bcg_Y           65 AGQ-ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA  142 (206)
T ss_dssp             TTT-TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCh-HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            444 3344445567899999999999987532211     1122221 2468999999999997632  12233333345


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++.|+++++++|.+.+.+
T Consensus       143 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          143 NKMPFLETSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             TTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            67789999999999999999999887765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.48  E-value=2.2e-07  Score=77.13  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999999984

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.48  E-value=1.2e-07  Score=79.56  Aligned_cols=100  Identities=14%  Similarity=0.057  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++|+|+|+..+.+... .    .+.... ..+.|+++|+||+|+.+...  .+...+....
T Consensus        65 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  142 (203)
T 1zbd_A           65 AGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH  142 (203)
T ss_dssp             CCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH
T ss_pred             CCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence            454 4455566788999999999999986532111 1    111111 24789999999999975321  2222233334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++.|+++++++|.+.+.+
T Consensus       143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          143 LGFEFFEASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             HTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999998876654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.48  E-value=2.1e-07  Score=77.15  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~  212 (298)
                      +.++|+++|.+|||||||+|+|++          ........+..|++.....+.+.. ...+.|+||||...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   76 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTD----------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   76 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc----------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence            357999999999999999999984          111222334455555544444432 12588999999643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.48  E-value=6.2e-08  Score=79.15  Aligned_cols=101  Identities=18%  Similarity=0.073  Sum_probs=67.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC-CCCCCcEEEEEecCCCCChhh--HHHHHHHHHccC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH-PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQN  103 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l-~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~  103 (298)
                      ||+ .+........+..+|++++|+|+..+.+....  .+..+. ...+.|+++|+||+|+.+...  ...........+
T Consensus        66 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  144 (181)
T 3tw8_B           66 AGQ-ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG  144 (181)
T ss_dssp             TTG-GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             CCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC
Confidence            454 33444455678999999999999875322111  111110 024689999999999865421  223333334457


Q ss_pred             CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          104 CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++.+||+++.|++++++++.+.+.+
T Consensus       145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          145 IQLFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999999887765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.48  E-value=2.2e-07  Score=76.64  Aligned_cols=58  Identities=21%  Similarity=0.350  Sum_probs=39.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      .+.++|+++|.+|||||||+|+|.+           .......+..|.+..  .+.+ .+..+.++||||..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~-~~~~~~~~Dt~G~~   73 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG-----------EDVDTISPTLGFNIK--TLEH-RGFKLNIWDVGGQK   73 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT-----------CCCSSCCCCSSEEEE--EEEE-TTEEEEEEEECCSH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc-----------CCCCcccccCccceE--EEEE-CCEEEEEEECCCCH
Confidence            3568999999999999999999983           223333444444322  2323 23468899999973

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.48  E-value=3.6e-08  Score=79.84  Aligned_cols=101  Identities=11%  Similarity=-0.017  Sum_probs=64.2

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCC---CCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHP---FSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~---~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      .||+ .+........+..+|.+++|+|+..+.+... ..+...+.   ..+.|+++|+||+|+.+..  ..+...+..+.
T Consensus        62 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  140 (170)
T 1z08_A           62 TAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES  140 (170)
T ss_dssp             CCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence            3565 4444555567899999999999986532111 11111111   1468999999999997532  12333334445


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.+++.+||+++.|+++++++|.+.+.
T Consensus       141 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          141 VGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             TTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            5778999999999999999999987654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.47  E-value=1.9e-07  Score=76.83  Aligned_cols=59  Identities=29%  Similarity=0.318  Sum_probs=36.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi~~  212 (298)
                      ..++|+++|.+|||||||+|+|++           ..  .....++++.+...  +.+... ..+.++||||...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   64 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQ-----------NH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE   64 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH-----------SS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh-----------CC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence            457999999999999999999984           11  12233334433222  222221 1367899999654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.47  E-value=1.8e-07  Score=75.68  Aligned_cols=90  Identities=22%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             HhcCCCCeEEEEEeCCCCCCccc--HH---HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecCC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEF--DQ---LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~--~~---l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      ..+..+|++++|+|+..+.+...  ..   +.......+.|+++|+||+|+.+..  ..+...+..+..+.+++.+||++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T 3q85_A           71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  150 (169)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence            34667999999999986432111  11   2222222478999999999996432  12233334445577899999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      +.|++++++.+.+.+..
T Consensus       151 ~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          151 HHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999877654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.47  E-value=2.5e-07  Score=77.47  Aligned_cols=61  Identities=13%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      ..++|+++|.+|||||||+|+|++          ........+..|++.....+.+.. ...+.++||||..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   68 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYAD----------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE   68 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT----------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhc----------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence            457999999999999999999983          111122334445555544444332 2258899999974

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.47  E-value=1.1e-07  Score=80.06  Aligned_cols=101  Identities=17%  Similarity=0.044  Sum_probs=69.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH-Hhcc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ-LRNH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~-l~~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++|+|+|+..+.+... .. +..+  ....+.|+++|+||+|+.+...  ..+..++....
T Consensus        82 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~  160 (200)
T 2o52_A           82 AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN  160 (200)
T ss_dssp             TTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred             CCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc
Confidence            454 4555555677899999999999986532211 11 1111  1125789999999999964321  23344444456


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++++.+||+++.|++++++.|.+.+.+
T Consensus       161 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          161 ELMFLETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            7789999999999999999998877654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.47  E-value=8.3e-08  Score=76.89  Aligned_cols=92  Identities=20%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHccCCCEEEEec
Q 022351           38 AIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPSFGVNS  111 (298)
Q Consensus        38 ~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~iSa  111 (298)
                      .....+..+|.+++|+|+..+.+... .    .+.......+.|+++|+||+|+.+... .+...+..+..+.+++.+||
T Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (166)
T 2ce2_X           67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA  146 (166)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred             HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence            34456778999999999876432111 1    122221123799999999999976322 22223333345678999999


Q ss_pred             CCCcCHHHHHHHHHHHHH
Q 022351          112 HNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~  129 (298)
                      +++.|++++++++.+.+.
T Consensus       147 ~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          147 KTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.47  E-value=1.5e-07  Score=79.62  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=68.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+...     ..+.... ..+.|+++|+||+|+.....  .+...++...
T Consensus        83 ~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  160 (201)
T 2ew1_A           83 AGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA  160 (201)
T ss_dssp             CCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            454 4555566788999999999999986532211     1122221 24689999999999964321  1222233334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|++++++.+.+.+.+
T Consensus       161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          161 QDMYYLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999998877654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.46  E-value=2.4e-07  Score=77.74  Aligned_cols=61  Identities=20%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           .. ......|.++.+..  .+.+... ..+.|+||||...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVN-----------KK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER   69 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH-----------SC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc-----------CC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence            4568999999999999999999984           11 11122233333333  3333221 2588999999643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.46  E-value=2.4e-07  Score=76.25  Aligned_cols=60  Identities=13%  Similarity=0.182  Sum_probs=38.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|++           .. ......|.++.+..  .+.+... ..+.++||||..
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   70 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIE-----------KK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE   70 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH-----------SS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc-----------CC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence            3468999999999999999999984           11 11122333343332  3333221 258899999953

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.46  E-value=7.5e-08  Score=80.15  Aligned_cols=100  Identities=17%  Similarity=0.046  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+ .    .+.... ..+.|+++|+||+|+.+...  .+...++...
T Consensus        78 ~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  155 (191)
T 2a5j_A           78 AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFARE  155 (191)
T ss_dssp             TTG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHH
Confidence            454 3444445577889999999999986432211 1    111111 24789999999999964321  2223333334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|++++++.|.+.+.+
T Consensus       156 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          156 HGLIFMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             HTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999998877654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.46  E-value=2.7e-07  Score=74.06  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            457999999999999999999984

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.46  E-value=2.8e-07  Score=76.44  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=38.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi  210 (298)
                      ...++|+++|.+|||||||+|+|++          ........+..|++.....+.+... ..+.|+||||.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~   79 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA----------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ   79 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH----------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc----------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc
Confidence            3468999999999999999999984          1111112233333333333433321 25889999995

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.46  E-value=1.8e-07  Score=77.20  Aligned_cols=59  Identities=20%  Similarity=0.354  Sum_probs=41.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|.+           .......+.+|.+..  .+.+ .+..+.++||||...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~-----------~~~~~~~~t~~~~~~--~~~~-~~~~~~i~Dt~G~~~   77 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVI-NNTRFLMWDIGGQES   77 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHT-----------TSCEEEECCSSSSCE--EEEE-TTEEEEEEEESSSGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCcCceeeE--EEEE-CCEEEEEEECCCCHh
Confidence            4568999999999999999999983           233555666665432  2323 234689999999743

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.46  E-value=9.7e-08  Score=79.50  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh-------------
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ-------------   91 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~-------------   91 (298)
                      ||+ .+........+..+|++++|+|+..+.+....  .+...+.  ..+.|+++|+||+|+.+...             
T Consensus        74 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v  152 (194)
T 2atx_A           74 AGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPI  152 (194)
T ss_dssp             CCS-SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCC
T ss_pred             CCC-cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCccc
Confidence            443 33334455678999999999999865321111  1111111  13789999999999976421             


Q ss_pred             -HHHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351           92 -FKEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        92 -~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                       .++..++.+..+. +++.+||+++.|++++++.|.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          153 CVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             CHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence             1222233333455 899999999999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.45  E-value=2.2e-07  Score=75.98  Aligned_cols=62  Identities=21%  Similarity=0.133  Sum_probs=38.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|++.          .......+..|++.....+.+.. ...+.++||||..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   72 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD----------QFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE   72 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC----------CCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC----------CCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence            34689999999999999999999841          11111112233333333333332 1258899999953

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.45  E-value=3.4e-08  Score=79.77  Aligned_cols=98  Identities=15%  Similarity=0.066  Sum_probs=65.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++++|+|+..+.+...  ..+..+.  ...+.|+++|+||+|+.+..  ..++..+.....
T Consensus        63 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~  141 (170)
T 1r2q_A           63 AGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN  141 (170)
T ss_dssp             CCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred             CCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc
Confidence            554 3444455677899999999999986532111  1111111  12468899999999996432  123333444456


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      +.+++.+||+++.|+++++++|.+.
T Consensus       142 ~~~~~~~Sa~~g~gi~~l~~~i~~~  166 (170)
T 1r2q_A          142 SLLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            7789999999999999999998754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.45  E-value=7e-08  Score=91.21  Aligned_cols=64  Identities=27%  Similarity=0.282  Sum_probs=40.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~~~  214 (298)
                      ....+|+++|.+|+|||||+|+|++           ...+.++..+|+|.+.....+  .....+.|+||||+....
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~-----------~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~   97 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVG-----------QNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG   97 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC------------------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHc-----------CCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence            4568999999999999999999983           344567788999988765433  332368999999997643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=2.5e-07  Score=74.68  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|+|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999999983

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.45  E-value=2.8e-08  Score=82.90  Aligned_cols=98  Identities=14%  Similarity=0.067  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh----hhHHHHHHHHHccCC
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP----TQFKEWITFFDQQNC  104 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~----~~~~~~~~~~~~~~~  104 (298)
                      .+........+..+|++++|+|+..+.+..+  ..+...+.  ..+.|+++|+||+|+.+.    ...+...+..+..+.
T Consensus        82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  161 (194)
T 3reg_A           82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC  161 (194)
T ss_dssp             GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence            4444555678999999999999987532222  11111111  246899999999999743    112333333334566


Q ss_pred             C-EEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          105 P-SFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 ~-vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      . ++.+||+++.|++++++.+.+.+.+
T Consensus       162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          162 VAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            5 9999999999999999999877654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.44  E-value=4.2e-08  Score=80.19  Aligned_cols=101  Identities=18%  Similarity=0.106  Sum_probs=65.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccCCC-----CCCc-EEEEEecCCCCChhh--HHHHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHHPF-----SSSR-RILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l~~-----~~k~-~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+ ..+...+..     ...| +++|+||+|+.+...  .+...++.
T Consensus        64 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~  142 (178)
T 2hxs_A           64 GGQ-TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC  142 (178)
T ss_dssp             TTC-CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             CCC-ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence            444 3344445577899999999999987533211 111111111     2456 789999999965321  22233333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +..+++++.+||+++.|+++++++|.+.+.+
T Consensus       143 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          143 QENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            3456789999999999999999999877644

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.44  E-value=2.7e-07  Score=78.47  Aligned_cols=104  Identities=14%  Similarity=0.057  Sum_probs=59.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH----------
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF----------   92 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~----------   92 (298)
                      |..+...+........+..+|++++|+|+..+.+....  .+...+.  ..+.|+++|+||+|+.+....          
T Consensus        87 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  166 (214)
T 2j1l_A           87 WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLE  166 (214)
T ss_dssp             EEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCC
T ss_pred             EECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccC
Confidence            44333355555566778999999999999865322111  1111111  147899999999999765322          


Q ss_pred             ----HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           93 ----KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        93 ----~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                          ++..+..+..+. +++.+||+++.|++++++.|.+.+.+
T Consensus       167 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          167 PVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence                122233334565 78999999999999999999877654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.44  E-value=1.8e-07  Score=77.39  Aligned_cols=58  Identities=26%  Similarity=0.389  Sum_probs=41.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|.+           .....+.+.+|.+..  .+.+. +..+.++||||..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~-----------~~~~~~~~t~g~~~~--~~~~~-~~~l~i~Dt~G~~   71 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS-----------EDISHITPTQGFNIK--SVQSQ-GFKLNVWDIGGQR   71 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC-----------SCCEEEEEETTEEEE--EEEET-TEEEEEEECSSCG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc-----------CCCCcccCcCCeEEE--EEEEC-CEEEEEEECCCCH
Confidence            4568999999999999999999983           233445556665432  22232 3358899999964

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.44  E-value=1e-07  Score=87.06  Aligned_cols=100  Identities=15%  Similarity=0.075  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCC---CCCcEEEEEecCCCCChhhHHHHHHHHHc--
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPF---SSSRRILVLNKMDLASPTQFKEWITFFDQ--  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~---~~k~~IiVlNK~DL~~~~~~~~~~~~~~~--  101 (298)
                      ||+ .+........+..+|++|+|+|+.++.+...  ..+..++..   .+.|+++|+||+|+.+....+++...+..  
T Consensus       217 ~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~  295 (329)
T 3o47_A          217 GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS  295 (329)
T ss_dssp             C------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTT
T ss_pred             CCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhh
Confidence            454 5555556677899999999999976543222  223333222   37899999999999876544555555432  


Q ss_pred             ---cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 ---QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ---~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                         .+++++.+||+++.|++++++.|.+.+.
T Consensus       296 ~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          296 LRHRNWYIQATCATSGDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             CCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             hhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence               2346899999999999999999987664

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.44  E-value=6.1e-08  Score=79.50  Aligned_cols=96  Identities=17%  Similarity=0.038  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------HHHH
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------KEWI   96 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------~~~~   96 (298)
                      .+........+..+|++++|+|+..+.+..+.  .+...+.  ..+.|+++|+||+|+.+....            ++..
T Consensus        67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~  146 (182)
T 3bwd_D           67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE  146 (182)
T ss_dssp             CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred             hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence            33444455678999999999999865332111  1111111  137899999999999654321            2222


Q ss_pred             HHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351           97 TFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        97 ~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.....+. +++.+||+++.|++++++.+.+.+
T Consensus       147 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          147 ELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            23333454 789999999999999999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.44  E-value=2.5e-07  Score=77.19  Aligned_cols=62  Identities=18%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|.+          ........+..|++.....+.+... ..+.++||||..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   86 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD----------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE   86 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc----------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence            3468999999999999999999983          1111222334444444444444321 258899999953

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.44  E-value=2.6e-07  Score=75.74  Aligned_cols=62  Identities=19%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILPP  213 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~~  213 (298)
                      ..++|+++|.+|||||||+|+|+.          ........+..+.+. ...+.+... -.+.++||||....
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~   67 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE----------GQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEY   67 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH----------SSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc----------CCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhh
Confidence            457999999999999999999983          122222333334333 222223221 14679999997653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.43  E-value=4.8e-08  Score=81.11  Aligned_cols=93  Identities=18%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCccc-H----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEF-D----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i  109 (298)
                      ......+..+|++++|+|+..+.+... .    .+.... ..+.|+++|+||+|+.+...  .+...+..+..+++++.+
T Consensus        86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (189)
T 2gf9_A           86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA  164 (189)
T ss_dssp             CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence            344567899999999999976532211 1    111211 24789999999999975321  222333333456789999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||+++.|+++++++|.+.+.+
T Consensus       165 Sa~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          165 SAKENINVKQVFERLVDVICE  185 (189)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.43  E-value=2.2e-07  Score=76.30  Aligned_cols=59  Identities=20%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|.+           +......+..|.+..  .+.+. +..+.++||||...
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~   74 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI-----------GEVVTTKPTIGFNVE--TLSYK-NLKLNVWDLGGQTS   74 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC-----------SEEEEECSSTTCCEE--EEEET-TEEEEEEEEC----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCcCccCCcCccceE--EEEEC-CEEEEEEECCCCHh
Confidence            4678999999999999999999982           333455565664432  23232 34588999999865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.43  E-value=3.3e-07  Score=75.82  Aligned_cols=59  Identities=19%  Similarity=0.334  Sum_probs=38.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|.+           +......+..|.+..  .+.+. +..+.++||||...
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~   72 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVE--EIVIN-NTRFLMWDIGGQES   72 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT-----------TSCEEEECCSCSSCE--EEEET-TEEEEEEECCC---
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCcCcCCCccceE--EEEEC-CEEEEEEECCCCHh
Confidence            4568999999999999999999983           222244454454322  22232 34688999999854

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.43  E-value=9.6e-08  Score=79.45  Aligned_cols=101  Identities=14%  Similarity=-0.007  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++|+|+|+..+.+...  ..+..+.  ...+.|+++|+||+|+.+..  ..+....+....
T Consensus        82 ~G~-~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~  160 (193)
T 2oil_A           82 AGL-ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN  160 (193)
T ss_dssp             SCC-CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT
T ss_pred             CCc-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc
Confidence            444 3333445567889999999999986533211  1111111  12478999999999997532  123333344456


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++++.+||+++.|++++++.|.+.+.+
T Consensus       161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          161 GLLFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            7789999999999999999998876654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.43  E-value=2e-07  Score=79.06  Aligned_cols=63  Identities=19%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC--CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH--PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~--~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++          ........+..+++.....+....+  ..+.++||||...
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   73 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD----------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK   73 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT----------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc----------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence            4568999999999999999999983          2223344555665554444333222  2488999999754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.43  E-value=5.3e-08  Score=82.75  Aligned_cols=93  Identities=10%  Similarity=0.005  Sum_probs=63.0

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i  109 (298)
                      ......+..+|++|+|+|+..+.+..+.     .+.... ..+.|+++|+||+|+.+...  .+.........+.+++.+
T Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  154 (218)
T 4djt_A           76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI  154 (218)
T ss_dssp             CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred             hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence            3344567889999999999875332221     122211 24689999999999976522  122223333456789999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||+++.|++++++.|.+.+.+
T Consensus       155 Sa~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          155 SAKTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             BTTTTBTTTHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999888765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.42  E-value=4.2e-07  Score=74.91  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            3468999999999999999999984

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=7.9e-08  Score=80.17  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=67.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+... ..    +.... ..+.|+++|+||+|+.+..  ..+...++.+.
T Consensus        80 ~G~-~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~  157 (192)
T 2fg5_A           80 AGQ-ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAES  157 (192)
T ss_dssp             CCS-GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred             CCc-hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            554 3444455677899999999999987532211 11    11111 2478999999999996422  23344455556


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.+++.+||+++.|++++++.|.+.+.
T Consensus       158 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          158 IGAIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             TTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             cCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            6788999999999999999999876543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.42  E-value=1.2e-07  Score=76.65  Aligned_cols=99  Identities=11%  Similarity=-0.028  Sum_probs=65.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HHHhccC---CCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQLRNHH---PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~~l---~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++++|+|+..+.+... ..+...+   .....|+++|+||+|+.+...  .+.........
T Consensus        63 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~  141 (170)
T 1z0j_A           63 AGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI  141 (170)
T ss_dssp             CCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred             CCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc
Confidence            454 3344455577899999999999987533221 1111111   124688999999999975322  22223333345


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.+++.+||+++.|++++++.|.+.+
T Consensus       142 ~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          142 HAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            67899999999999999999987653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.42  E-value=1.7e-07  Score=91.45  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=29.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccce--eecCCCCeee
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHA--TVSPQPGETK  189 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~--~~~~~pg~T~  189 (298)
                      ...+|+++|.+|||||||||+|++           .+..  .++..|+||+
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg-----------~~~~~~~vs~~p~T~~  103 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLE-----------QEVPGSRVGPEPTTDC  103 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHT-----------SCCSSCCCCSSCCCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC-----------CccccCccCCCCccce
Confidence            457999999999999999999994           2222  4666676654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.41  E-value=2.4e-08  Score=81.56  Aligned_cols=99  Identities=18%  Similarity=0.065  Sum_probs=65.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~  102 (298)
                      ||+ .+....+...+..+|++++|+|+..+.+...  ..+..+.  ...+.|+++|+||+|+.+...  .+.........
T Consensus        71 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~  149 (179)
T 2y8e_A           71 AGQ-ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL  149 (179)
T ss_dssp             CCS-GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH
T ss_pred             CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc
Confidence            444 3344445567788999999999986532111  1111111  124789999999999975422  23333444445


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.+++.+||+++.|++++++.|.+.+
T Consensus       150 ~~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          150 NVMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             TCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999987643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.41  E-value=4e-07  Score=78.19  Aligned_cols=92  Identities=13%  Similarity=0.043  Sum_probs=62.0

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccH---HHhccCCC--CCCcEEEEEecCCCCChhhH-----HHHHHHHHccC--CCE
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFD---QLRNHHPF--SSSRRILVLNKMDLASPTQF-----KEWITFFDQQN--CPS  106 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~---~l~~~l~~--~~k~~IiVlNK~DL~~~~~~-----~~~~~~~~~~~--~~v  106 (298)
                      +......+|++|+|+|+..+.+....   .+...+..  .+.|+++|+||+|+.+...+     ....+.....+  .++
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            44557889999999999876543211   22222222  37999999999999764321     12222333344  678


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHh
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+||+++.|+++++++|.+.+.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.41  E-value=4.2e-07  Score=74.09  Aligned_cols=60  Identities=30%  Similarity=0.315  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++.           .  .....++++....  .+.+.+. ..+.++||||...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~-----------~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~   69 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS-----------Y--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE   69 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS-----------S--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC-----------c--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence            45689999999999999999999841           1  1222333333222  1222221 2478999999654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.40  E-value=2.7e-07  Score=81.10  Aligned_cols=84  Identities=19%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             CCCeEEEEEeCCCC--CCccc--HHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHHc-cCCCEEEEecCCCcC
Q 022351           45 LVDIILEVRDARIP--FSSEF--DQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFDQ-QNCPSFGVNSHNKDN  116 (298)
Q Consensus        45 ~aDlVl~VvDa~~p--~~~~~--~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-~~~~vi~iSa~~~~g  116 (298)
                      ++|++|+|+|+..+  .+...  ..+..+.   ...+.|+++|.||+||.....++...+.... .+.+++.+||+++.|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence            69999999999876  33221  1111111   1147899999999999766555444444433 367899999999999


Q ss_pred             HHHHHHHHHHHH
Q 022351          117 VKEFLKFLQAHV  128 (298)
Q Consensus       117 i~~L~~~l~~~i  128 (298)
                      ++++++.|.+.+
T Consensus       242 v~elf~~l~~~l  253 (255)
T 3c5h_A          242 VDLAFSTLVQLI  253 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.40  E-value=3.8e-07  Score=76.09  Aligned_cols=59  Identities=27%  Similarity=0.367  Sum_probs=38.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+..+|+++|.+|||||||+|+|.+           ++.....+..+.+.  ..+.+. +..+.++||||...
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~-----------~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~   79 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN-----------DRLATLQPTWHPTS--EELAIG-NIKFTTFDLGGHIQ   79 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH-----------SCCCCCCCCCSCEE--EEEEET-TEEEEEEECCCSGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc-----------CCCCccccCCCCCe--EEEEEC-CEEEEEEECCCCHH
Confidence            3456999999999999999999984           22233444444442  233333 24688999999754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.40  E-value=4.8e-08  Score=82.22  Aligned_cols=99  Identities=19%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------   92 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------   92 (298)
                      ||+ .+........+..+|++++|+|+..+.+....  .+...+.  ..+.|+++|+||+|+.+....            
T Consensus        81 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v  159 (201)
T 2gco_A           81 AGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPV  159 (201)
T ss_dssp             CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCC
T ss_pred             CCc-hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcC
Confidence            454 33333444678999999999999864321111  1111111  137999999999999865321            


Q ss_pred             --HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHH
Q 022351           93 --KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        93 --~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                        +...++....+. +++.+||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          160 RSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence              122223334455 789999999999999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.40  E-value=3.1e-08  Score=81.43  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=65.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------   92 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------   92 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+.  .+...+.  ..+.|+++|+||+|+.+....            
T Consensus        61 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v  139 (186)
T 1mh1_A           61 AGQ-EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI  139 (186)
T ss_dssp             CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred             CCC-HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccC
Confidence            454 33434445678999999999999865322211  1111111  137899999999999754211            


Q ss_pred             --HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           93 --KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        93 --~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                        +...+..+..+. +++.+||+++.|++++++.+.+.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          140 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence              122223334455 8999999999999999999987764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.40  E-value=5.8e-07  Score=72.27  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999984

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.39  E-value=3e-07  Score=75.00  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            4568999999999999999999984

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.39  E-value=2.9e-07  Score=77.38  Aligned_cols=59  Identities=14%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeee--eEEEEEccC-CCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKD--IYSLKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~--~~~~~~~~~-~~~~liDTPGi  210 (298)
                      ...++|+++|.+|||||||+|+|++           ... .....|.++.+  ...+.+... ..+.|+||||.
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~-----------~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~   84 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE-----------NKF-KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ   84 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------------------CCEEEEEEEETTEEEEEEEECCTTH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh-----------CCC-CccCCCcccceeEEEEEEECCeeeEEEEEcCCCc
Confidence            4568999999999999999999983           111 11122322322  223333221 25889999995

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.39  E-value=1.1e-07  Score=89.21  Aligned_cols=102  Identities=14%  Similarity=0.075  Sum_probs=70.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCC-hhhHH----HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLAS-PTQFK----EWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~-~~~~~----~~~~~~~  100 (298)
                      .-||| .++.+.+...+..+|++|+|+|++.+......++...+...+.| +++++||+|+.+ .+..+    +..+++.
T Consensus        81 DtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  159 (405)
T 2c78_A           81 DCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  159 (405)
T ss_dssp             ECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence            34777 56778888889999999999999987655444433332234677 789999999984 32222    2333343


Q ss_pred             ccC-----CCEEEEecCCCcC------------------HHHHHHHHHHHHH
Q 022351          101 QQN-----CPSFGVNSHNKDN------------------VKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~~g------------------i~~L~~~l~~~i~  129 (298)
                      ..+     .+++++||+++.|                  +.+|++.|.+.++
T Consensus       160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            333     5799999999876                  7777777776554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.39  E-value=2.7e-07  Score=75.36  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999984

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.39  E-value=3.5e-07  Score=76.87  Aligned_cols=61  Identities=20%  Similarity=0.202  Sum_probs=38.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee--EEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~--~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|.+           .. ......|.++.+.  ..+.+... ..+.|+||||...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSD-----------DT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER   69 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH-----------CC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc-----------CC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence            3458999999999999999999984           11 1122233333332  23333321 1588999999654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.39  E-value=6.6e-07  Score=72.87  Aligned_cols=101  Identities=13%  Similarity=0.021  Sum_probs=67.8

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccC---CCCCCcEEEEEecCCCCChh-hHHHHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHH---PFSSSRRILVLNKMDLASPT-QFKEWITFF   99 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l---~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~   99 (298)
                      ||+ .+........+..+|++++|+|+..+.+...     ..+....   ...+.|+++|+||+|+.... ..+...+..
T Consensus        64 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~  142 (177)
T 1wms_A           64 AGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWC  142 (177)
T ss_dssp             CCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHH
T ss_pred             CCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHH
Confidence            454 4445556678999999999999986532211     1122111   12578999999999997432 223333333


Q ss_pred             H-ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 D-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      . ..+.+++.+||+++.|++++++.+.+.+.+
T Consensus       143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          143 RDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            3 345689999999999999999998876643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.39  E-value=3.8e-07  Score=75.80  Aligned_cols=63  Identities=19%  Similarity=0.165  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|.+.          .......+..|++.....+.+... ..+.|+||||...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   82 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDK----------RFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES   82 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHS----------CCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence            34689999999999999999999841          111111222333333333433321 2588999999643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.39  E-value=4.2e-07  Score=75.59  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            4568999999999999999999984

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.38  E-value=5.4e-07  Score=75.33  Aligned_cols=60  Identities=27%  Similarity=0.280  Sum_probs=37.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           ..  .....++++....  .+.+... ..+.|+||||...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   74 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMY-----------DE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED   74 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH-----------SC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh-----------CC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence            4568999999999999999999984           11  1122233332221  2223221 1588999999643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.38  E-value=2.2e-07  Score=90.21  Aligned_cols=61  Identities=23%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      -||| .++...+...+..+|.+|+|+|+..+.......+...+...+.|+++|+||+|+...
T Consensus        89 TPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred             CCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence            3677 556667788899999999999999877666555544444468999999999999643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.38  E-value=3.8e-07  Score=75.54  Aligned_cols=59  Identities=25%  Similarity=0.375  Sum_probs=39.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|..           +......+..|.+..  .+... ...+.++||||...
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~-----------~~~~~~~~t~~~~~~--~~~~~-~~~~~~~Dt~G~~~   78 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL-----------GDVVTTVPTVGVNLE--TLQYK-NISFEVWDLGGQTG   78 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC-----------SCCEEECSSTTCCEE--EEEET-TEEEEEEEECCSSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc-----------CCCCCcCCCCceEEE--EEEEC-CEEEEEEECCCCHh
Confidence            4578999999999999999999972           223333343443322  22222 33688999999754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.38  E-value=2.9e-07  Score=86.23  Aligned_cols=102  Identities=12%  Similarity=0.001  Sum_probs=70.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCC-hhhH----HHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLAS-PTQF----KEWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~-~~~~----~~~~~~~~  100 (298)
                      .-||| .++...+...+..+|++|+|+|++.+......+...++...+.| +++++||+|+.+ .+..    ++..++++
T Consensus        72 DtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           72 DCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (397)
T ss_dssp             ECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence            34777 66788888999999999999999987654433332322235677 689999999985 3222    22333443


Q ss_pred             ccC-----CCEEEEecCCCcC----------HHHHHHHHHHHHH
Q 022351          101 QQN-----CPSFGVNSHNKDN----------VKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~~g----------i~~L~~~l~~~i~  129 (298)
                      ..+     .+++++||+++.+          +.+|++.|.+.++
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            333     4899999998653          7888888877654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.38  E-value=2.8e-07  Score=90.65  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=72.1

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCC--
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNC--  104 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~--  104 (298)
                      -||| ..+...+...+..+|.+|+|+|+..+...............+.|+++|+||+|+.... .....+.+. ..+.  
T Consensus        80 TPGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           80 TPGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             CCCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCG
T ss_pred             CCCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCc
Confidence            4777 5566777788899999999999998765544332222113578999999999997543 222223332 2344  


Q ss_pred             -CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          105 -PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 -~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                       +++++||+++.|+++|++.+.+.++.
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccc
Confidence             48999999999999999999877654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.37  E-value=5.1e-07  Score=72.16  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|+|.+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999984

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.37  E-value=1.2e-07  Score=79.62  Aligned_cols=99  Identities=13%  Similarity=0.027  Sum_probs=63.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChh--------hHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPT--------QFKEW   95 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~--------~~~~~   95 (298)
                      ||+ .+....+...+..+|++|+|+|+..+.+..+ ..    +... ...+.|+++|+||+|+.+..        ..+..
T Consensus        85 ~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~  162 (199)
T 2p5s_A           85 AGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFG  162 (199)
T ss_dssp             TTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred             CCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHH
Confidence            554 3444555677888999999999986533222 11    1111 12478999999999995211        11122


Q ss_pred             HHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           96 ITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        96 ~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .++....+.+++.+||+++.|+++++..|.+.+.
T Consensus       163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            2233345678999999999999999999877653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.37  E-value=4.6e-07  Score=76.61  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc--CCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS--HPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~--~~~~~liDTPGi~  211 (298)
                      ...++|+++|.+|||||||+|+|+.           ...  ....+.++.+...+.+..  ...+.|+||||..
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~-----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~   65 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLT-----------GQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE   65 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHH-----------SCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--ccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence            3457999999999999999999984           111  122333444444444443  2358999999964

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.37  E-value=4.5e-07  Score=75.41  Aligned_cols=59  Identities=17%  Similarity=0.338  Sum_probs=38.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceee--cCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATV--SPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~--~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ....+|+++|.+|||||||+|+|++           .....+  .+..|.+..  .+. .....+.|+||||...
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~-----------~~~~~~~~~~t~~~~~~--~~~-~~~~~~~i~Dt~G~~~   75 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP-----------AQSSSKHITATVGYNVE--TFE-KGRVAFTVFDMGGAKK   75 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC-----------CC----CCCCCSSEEEE--EEE-ETTEEEEEEEECCSGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCcccccccccceeEE--EEE-eCCEEEEEEECCCCHh
Confidence            4568999999999999999999983           222322  444454332  222 2233588999999743

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.37  E-value=8.5e-08  Score=77.33  Aligned_cols=101  Identities=15%  Similarity=0.012  Sum_probs=66.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCChhh--HHHHHHHHHcc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASPTQ--FKEWITFFDQQ  102 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~  102 (298)
                      .||+ .+........+..+|++++|+|+..+.+...  ..+..+.. ..+.|+++|+||+|+.+...  .+...+..+..
T Consensus        61 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~  139 (168)
T 1z2a_A           61 TAGQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL  139 (168)
T ss_dssp             CTTG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH
T ss_pred             CCCc-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc
Confidence            3554 3333445567889999999999986532111  11111100 14789999999999975321  23333344445


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +++++.+||+++.|+++++++|.+.+.
T Consensus       140 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          140 KLRFYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             TCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            778999999999999999999877653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.37  E-value=7.3e-08  Score=77.79  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=64.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCCh---hh--HHHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASP---TQ--FKEWITF   98 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~---~~--~~~~~~~   98 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+.     .+.... ..+.|+++|+||+|+.+.   ..  .+...+.
T Consensus        60 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~  137 (170)
T 1ek0_A           60 AGQ-ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKL  137 (170)
T ss_dssp             CCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH
T ss_pred             CCC-hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHH
Confidence            454 34444566778999999999999875322111     111111 247899999999999653   11  1222233


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      ....+.+++.+||+++.|+++++++|.+.
T Consensus       138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (170)
T 1ek0_A          138 AEEKGLLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             HHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            33456789999999999999999988643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.36  E-value=9.8e-08  Score=88.02  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .....++++|.||||||||+|+|.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3468999999999999999999985

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.36  E-value=6.8e-07  Score=89.91  Aligned_cols=56  Identities=11%  Similarity=0.198  Sum_probs=33.9

Q ss_pred             EecCCCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++..+.|+++++..+.++...+............+|+|+|.+|+|||||+|+|++
T Consensus        18 ~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g   73 (772)
T 3zvr_A           18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   73 (772)
T ss_dssp             -------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHS
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            45556677777777766655443221111112346999999999999999999986

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.36  E-value=4.9e-07  Score=72.67  Aligned_cols=55  Identities=18%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      ++|+++|.+|||||||+|+|.+           +......+..|.  ....+.. ....+.++||||..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~-----------~~~~~~~~t~~~--~~~~~~~-~~~~~~i~Dt~G~~   55 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKL-----------GEIVTTIPTIGF--NVETVEY-KNISFTVWDVGGQD   55 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH-----------HCSSCCCCCSSC--CEEEEEC-SSCEEEEEECCCCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHc-----------CCcCcccCcCce--eEEEEEE-CCEEEEEEEcCCCh
Confidence            3799999999999999999984           111111222221  1112222 33468999999974

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.35  E-value=1.5e-07  Score=78.57  Aligned_cols=100  Identities=22%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+..  .......+..+|++++|+|+..+.+..+     ..+.......+.|+++|+||+|+.+...  .+...++...
T Consensus        84 ~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  161 (196)
T 2atv_A           84 AGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE  161 (196)
T ss_dssp             CCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            45432  3344566788999999999986532211     1122222235789999999999965321  2222233334


Q ss_pred             cCCCEEEEecCCCc-CHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKD-NVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~-gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++. |+++++++|.+.+.+
T Consensus       162 ~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          162 LACAFYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             HTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             hCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence            46789999999999 999999999877654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.35  E-value=5.5e-08  Score=81.75  Aligned_cols=94  Identities=13%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i  109 (298)
                      ......+..+|++++|+|+..+.+...     ..+.......+.|+++|+||+|+.+...  ...........+.+++.+
T Consensus        87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  166 (201)
T 3oes_A           87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMES  166 (201)
T ss_dssp             CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEE
Confidence            334567889999999999986432211     1122221124789999999999974321  122223333456789999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||+++.|++++++.|.+.+.+
T Consensus       167 Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          167 SARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999888765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.35  E-value=2.5e-07  Score=87.62  Aligned_cols=91  Identities=20%  Similarity=0.256  Sum_probs=62.6

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhH----HHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQF----KEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~----~~~~~~~~  100 (298)
                      -||| .++...+...+..+|++|+|+|++.+......+...++...+ +++++|+||+|+.+.  +..    +++.++++
T Consensus       111 tpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~  189 (434)
T 1zun_B          111 TPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAE  189 (434)
T ss_dssp             CCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHH
Confidence            3777 556677778899999999999999876544333222211234 468999999999862  222    23334444


Q ss_pred             ccC-----CCEEEEecCCCcCHHH
Q 022351          101 QQN-----CPSFGVNSHNKDNVKE  119 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~~gi~~  119 (298)
                      ..+     .+++++||+++.|+++
T Consensus       190 ~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          190 GIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             TTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HhCCCccCceEEEEeccCCCCccc
Confidence            555     4689999999999886

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.35  E-value=1.1e-07  Score=83.80  Aligned_cols=79  Identities=18%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ..+|+|++|+|+..+  ..+..+..++...+.|+++|+||+|+.....    .+.+.+   ..+.+++++||+++.|+++
T Consensus        82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~gi~e  156 (256)
T 3iby_A           82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLES---LLGCSVIPIQAHKNIGIPA  156 (256)
T ss_dssp             SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHH---HHCSCEEECBGGGTBSHHH
T ss_pred             CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHH---HcCCCEEEEECCCCCCHHH
Confidence            899999999999863  2233344444456899999999999865432    222222   3478999999999999999


Q ss_pred             HHHHHHHH
Q 022351          120 FLKFLQAH  127 (298)
Q Consensus       120 L~~~l~~~  127 (298)
                      +++.+.+.
T Consensus       157 l~~~i~~~  164 (256)
T 3iby_A          157 LQQSLLHC  164 (256)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhh
Confidence            99998754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.35  E-value=4.5e-07  Score=76.06  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHh
Confidence            4568999999999999999999984

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.35  E-value=6.6e-07  Score=73.32  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.++|+++|.+|||||||+|+|+.
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Confidence            468999999999999999999984

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=1.7e-07  Score=77.91  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=39.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi  210 (298)
                      ..++|+++|.+|||||||+|+|++.          .......+.+|++.....+.+... ..+.|+||||.
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~   82 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADD----------TFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ   82 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHH----------TTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcC----------CCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence            4689999999999999999999841          111122223344444444444332 24889999993

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=6.1e-07  Score=75.79  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=37.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi  210 (298)
                      ...++|+++|.+|||||||+|+|++           .. ......|.++.+..  .+.+.+. -.+.++||||.
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~-----------~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~   85 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQ-----------GL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ   85 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH-----------SS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHh-----------CC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence            3458999999999999999999984           11 11122222223322  3333221 14889999995

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.34  E-value=1.9e-07  Score=77.76  Aligned_cols=100  Identities=15%  Similarity=0.015  Sum_probs=65.2

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCC-CCCCcEEEEEecCCCCChhh-HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHP-FSSSRRILVLNKMDLASPTQ-FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~-~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++++|+|+..+.+...  .   .+..... ..+.|+++|+||+|+.+... .+........
T Consensus        64 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  142 (199)
T 2gf0_A           64 TGS-HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE  142 (199)
T ss_dssp             CGG-GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH
T ss_pred             CCh-HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH
Confidence            454 3333445566788999999999986432111  1   1222111 13689999999999975321 2222233334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.+++.+||+++.|+++++++|.+.+.
T Consensus       143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          143 WKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             HTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999987654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.34  E-value=5.9e-07  Score=72.55  Aligned_cols=21  Identities=48%  Similarity=0.687  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|+|.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999997

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.34  E-value=4.8e-07  Score=84.07  Aligned_cols=100  Identities=8%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcE-EEEEe-cCCCCChhhHHH----HHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRR-ILVLN-KMDLASPTQFKE----WITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~-IiVlN-K~DL~~~~~~~~----~~~~~~~  101 (298)
                      -||| .++.+.+...+..+|++|+|+| .........+...++...+.|. ++++| |+|+ +.+..+.    ..+++..
T Consensus        67 tPGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~  143 (370)
T 2elf_A           67 AHSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG  143 (370)
T ss_dssp             CTTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT
T ss_pred             CCCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh
Confidence            3677 5677778888899999999999 6655443333322222346777 99999 9999 6543332    2233322


Q ss_pred             c---CCCEEE--EecCC---CcCHHHHHHHHHHHHHh
Q 022351          102 Q---NCPSFG--VNSHN---KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~---~~~vi~--iSa~~---~~gi~~L~~~l~~~i~~  130 (298)
                      .   ..++++  +||++   +.|+++|++.|.+.++.
T Consensus       144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            2   257899  99999   99999999999887764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.34  E-value=6.3e-07  Score=74.33  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=37.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~  211 (298)
                      .+.++|+++|.+|||||||+|+|++          ........+..|.+.  ..+.. ....+.|+||||..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~----------~~~~~~~~~t~~~~~--~~~~~-~~~~~~l~Dt~G~~   78 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS----------GQFNEDMIPTVGFNM--RKITK-GNVTIKLWDIGGQP   78 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH----------SCCCCSCCCCCSEEE--EEEEE-TTEEEEEEEECCSH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc----------CCCCCccCCCCceeE--EEEEe-CCEEEEEEECCCCH
Confidence            4568999999999999999999984          111112233333332  22222 23358899999953

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.33  E-value=7e-07  Score=74.02  Aligned_cols=61  Identities=28%  Similarity=0.384  Sum_probs=37.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|.+..         .......+..|.+  ...+.+. +..+.++||||...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~---------~~~~~~~~t~~~~--~~~~~~~-~~~~~l~Dt~G~~~   79 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN---------AQSQNILPTIGFS--IEKFKSS-SLSFTVFDMSGQGR   79 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG---------GCCSSCCCCSSEE--EEEEECS-SCEEEEEEECCSTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC---------CCCCCcCCcccee--EEEEEEC-CEEEEEEECCCCHH
Confidence            456899999999999999999998310         0111222222322  2223332 34689999999654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.33  E-value=5e-07  Score=75.90  Aligned_cols=59  Identities=27%  Similarity=0.344  Sum_probs=36.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+..+|+++|.+|||||||+|+|.+           ++.....+..|.+.  ..+.+.+ ..+.++||||...
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~-----------~~~~~~~~t~~~~~--~~~~~~~-~~l~i~Dt~G~~~   81 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD-----------DRLGQHVPTLHPTS--EELTIAG-MTFTTFDLGGHIQ   81 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC-----------C------CCCCCSC--EEEEETT-EEEEEEEECC---
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc-----------CCCCccCCCCCcee--EEEEECC-EEEEEEECCCcHh
Confidence            4567999999999999999999973           22233334444442  2233332 3688999999654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.33  E-value=9.4e-07  Score=72.51  Aligned_cols=25  Identities=36%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|+++|.+|||||||+|+|+.
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999983

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.33  E-value=1.5e-07  Score=79.01  Aligned_cols=101  Identities=15%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChhh-HHHHHHHH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPTQ-FKEWITFF   99 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~~-~~~~~~~~   99 (298)
                      ||+ .+........+..+|++|+|+|+..+.+...     ..+.....   ..+.|+++|+||+|+..... .+....+.
T Consensus        65 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  143 (207)
T 1vg8_A           65 AGQ-ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC  143 (207)
T ss_dssp             CSS-GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH
T ss_pred             CCc-HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHH
Confidence            554 3333334567889999999999986532211     11211111   13689999999999974322 22333333


Q ss_pred             H-ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 D-QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~-~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      . ..+.+++.+||+++.|+++++++|.+.+.+
T Consensus       144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          144 YSKNNIPYFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             HHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            3 456789999999999999999999877654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.33  E-value=5.3e-08  Score=83.04  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCCh-------------
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASP-------------   89 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~-------------   89 (298)
                      |..+...+........+..+|++|+|+|+..+.+..+  ..+...+.  ..+.|+++|.||+|+.+.             
T Consensus        80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  159 (214)
T 3q3j_B           80 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQA  159 (214)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             EECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccC
Confidence            4433334444455567999999999999987533222  11211111  247899999999999642             


Q ss_pred             -hhHHHHHHHHHccCC-CEEEEecCCCcC-HHHHHHHHHHHHHh
Q 022351           90 -TQFKEWITFFDQQNC-PSFGVNSHNKDN-VKEFLKFLQAHVRN  130 (298)
Q Consensus        90 -~~~~~~~~~~~~~~~-~vi~iSa~~~~g-i~~L~~~l~~~i~~  130 (298)
                       ...+...+.....+. +++.+||+++.| ++++++.+.+.+..
T Consensus       160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          160 PISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence             111222233334466 789999999998 99999999877654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.33  E-value=4.9e-07  Score=73.92  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|.+           +......+..|.+. ...+.+.+. ..+.++||||...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~-----------~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~   66 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLT-----------GSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD   66 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHH-----------SCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh-----------CCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence            3568999999999999999999984           12222233333222 112223221 1478899999654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.33  E-value=5.6e-07  Score=81.15  Aligned_cols=89  Identities=15%  Similarity=0.230  Sum_probs=67.5

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC-hhhHHHHHHHHHc-cCC-CEEEEecCCCcC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS-PTQFKEWITFFDQ-QNC-PSFGVNSHNKDN  116 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~-~~~~~~~~~~~~~-~~~-~vi~iSa~~~~g  116 (298)
                      ...+..+|++++|+|+.. ++.....+.+.+...+.|+++++||+|+.. .....+..+.+.+ .++ .++++||+++.|
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~  161 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  161 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence            456899999999999977 665555555444345799999999999987 4555555555543 455 689999999999


Q ss_pred             HHHHHHHHHHHHH
Q 022351          117 VKEFLKFLQAHVR  129 (298)
Q Consensus       117 i~~L~~~l~~~i~  129 (298)
                      +++|++.+...++
T Consensus       162 v~~l~~~i~~~l~  174 (301)
T 1ega_A          162 VDTIAAIVRKHLP  174 (301)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.32  E-value=4.3e-08  Score=82.85  Aligned_cols=97  Identities=14%  Similarity=0.066  Sum_probs=63.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhH------------
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQF------------   92 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~------------   92 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+.  .+...+.  ..+.|+++|+||+|+.+....            
T Consensus        86 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v  164 (204)
T 4gzl_A           86 AGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI  164 (204)
T ss_dssp             CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred             CCc-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccc
Confidence            444 44444555689999999999999865332221  1111111  147999999999999764321            


Q ss_pred             --HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHH
Q 022351           93 --KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        93 --~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                        +....+.+..+. +++.+||+++.|++++++++.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence              122222333444 5899999999999999998864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.31  E-value=9.3e-08  Score=81.82  Aligned_cols=100  Identities=20%  Similarity=0.055  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ  101 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~  101 (298)
                      ||+ .+........+..+|++|+|+|+..+.+..+     ..+.... ..+.|+++|+||+|+.+...  .+...++...
T Consensus        70 ~G~-~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  147 (223)
T 3cpj_B           70 AGQ-ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE  147 (223)
T ss_dssp             TTT-TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCc-cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence            454 3444445567899999999999987533221     1111111 24789999999999965321  2233334445


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++.+||+++.|+++++++|.+.+.+
T Consensus       148 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          148 NQLLFTETSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             TTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.31  E-value=1.9e-07  Score=76.70  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEcc-CCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIAS-HPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~-~~~~~liDTPGi~~  212 (298)
                      ..++|+++|.+|||||||+|+|.+.           . ......|+++.+..  .+.+.+ ...+.++||||...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~-----------~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   69 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED-----------A-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER   69 (183)
T ss_dssp             EEEEEEEECCCCC----------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC-----------C-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence            4689999999999999999999831           1 11122233333332  233322 12588999999643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.31  E-value=8.4e-08  Score=77.58  Aligned_cols=92  Identities=17%  Similarity=0.073  Sum_probs=60.0

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCccc-HH----HhccC-CCCCCcEEEEEecCCCCChhhH--HHHHHHHHccCCCEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEF-DQ----LRNHH-PFSSSRRILVLNKMDLASPTQF--KEWITFFDQQNCPSFG  108 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l-~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~  108 (298)
                      ......+..+|.+++|+|+..+.+... ..    +.... ...+.|+++|+||+|+.+...+  ..........+.+++.
T Consensus        66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  145 (172)
T 2erx_A           66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME  145 (172)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence            444456778999999999986532211 11    22211 1147899999999999654221  2222223344678999


Q ss_pred             EecCCCcCHHHHHHHHHHHH
Q 022351          109 VNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +||+++.|+++++++|.+.+
T Consensus       146 ~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          146 TSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHTC
T ss_pred             ecCCCCcCHHHHHHHHHHHH
Confidence            99999999999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.30  E-value=1.1e-07  Score=78.16  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      ......+..+|++++|+|+..+.+.....+...+   ...+.|+++|+||+|+.+...     +.....+.+++.+||++
T Consensus        75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~  149 (172)
T 2gj8_A           75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSART  149 (172)
T ss_dssp             HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTT
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCC
Confidence            3445668899999999999877654433222111   124689999999999854211     01112345789999999


Q ss_pred             CcCHHHHHHHHHHHHH
Q 022351          114 KDNVKEFLKFLQAHVR  129 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~  129 (298)
                      +.|++++++.|.+.+.
T Consensus       150 g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          150 GEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             CTTHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.30  E-value=5.4e-07  Score=75.58  Aligned_cols=61  Identities=25%  Similarity=0.373  Sum_probs=37.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|.+.            .......|++|.+..  .+.+.+. -.+.++||||...
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   84 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGL------------QGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD   84 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCE------------ECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhc------------cCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence            45689999999999999999999731            111123344443332  2223221 1367889999743

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.30  E-value=9.1e-07  Score=73.90  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=35.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|.+           ..  .....++|+.+...  +.+.+. -.+.++||||...
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   80 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTT-----------NG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE   80 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC---------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh-----------CC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence            4578999999999999999999983           11  12223333332222  222211 1467999999855

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.30  E-value=1.2e-06  Score=72.97  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3568999999999999999999984

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.30  E-value=8.3e-07  Score=74.09  Aligned_cols=59  Identities=17%  Similarity=0.257  Sum_probs=35.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|+|..           +......+..|..  ...+.. ....+.++||||...
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~-----------~~~~~~~~t~~~~--~~~~~~-~~~~~~i~Dt~G~~~   85 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL-----------GEIVTTIPTIGFN--VETVEY-KNICFTVWDVGGQDK   85 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS-----------SCCEEEEEETTEE--EEEEEE-TTEEEEEEECC----
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh-----------CCccccCCcCcee--EEEEEE-CCEEEEEEECCCCHh
Confidence            4678999999999999999999973           2222222222211  112222 233588999999754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.30  E-value=6.1e-07  Score=76.07  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=38.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ....+|+++|.+|||||||+|+|.+.         ......++..|+++.+.      ....+.++||||...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~---------~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~   67 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTD---------SVRPTVVSQEPLSAADY------DGSGVTLVDFPGHVK   67 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHS---------SCCCBCCCSSCEEETTG------GGSSCEEEECCCCGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC---------CCCCeeeecCceEEEEe------eCceEEEEECCCcHH
Confidence            45679999999999999999999841         11112223344443322      233689999999854

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.29  E-value=1.2e-06  Score=73.79  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|+++|.+|||||||+|++..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            4578999999999999999999983

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.29  E-value=1.3e-07  Score=79.98  Aligned_cols=94  Identities=17%  Similarity=0.014  Sum_probs=62.4

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhh----------HHHHHHHHHcc
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQ----------FKEWITFFDQQ  102 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~----------~~~~~~~~~~~  102 (298)
                      ......+..+|++|+|+|+..+.+..+.  .+...+.  ..+.|+++|+||+|+.+...          .+...+.....
T Consensus        72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (212)
T 2j0v_A           72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI  151 (212)
T ss_dssp             C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence            3344678999999999999865322111  1111111  13789999999999965432          22222333344


Q ss_pred             CC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NC-PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~-~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +. +++.+||+++.|++++++.+.+.+.+
T Consensus       152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence            54 78999999999999999999887754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.29  E-value=5.1e-08  Score=83.17  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQN  103 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~  103 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+     ..+...  ..+.|+++|+||+|+.+.........+....+
T Consensus        72 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  148 (221)
T 3gj0_A           72 AGQ-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN  148 (221)
T ss_dssp             CSG-GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGGCCHHHHHT
T ss_pred             CCh-HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHHHHHHHHcC
Confidence            444 3333344567889999999999986532211     112222  14789999999999975432222222333456


Q ss_pred             CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          104 CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++.+||+++.|+++++++|.+.+..
T Consensus       149 ~~~~~~Sa~~~~gi~~l~~~l~~~l~~  175 (221)
T 3gj0_A          149 LQYYDISAKSNYNFEKPFLWLARKLIG  175 (221)
T ss_dssp             CEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999887654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.29  E-value=8.9e-07  Score=74.21  Aligned_cols=90  Identities=22%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             HhcCCCCeEEEEEeCCCCCCccc--HHH---hccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecCC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEF--DQL---RNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~--~~l---~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      .++..+|++|+|+|+.++.+...  ..+   .......+.|+++|.||+|+.+..  ..++..++.+..+.+++.+||++
T Consensus        92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~  171 (195)
T 3cbq_A           92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  171 (195)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence            45678999999999986432111  112   111112478999999999997532  12233333334567899999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      +.|++++++.+.+.+.+
T Consensus       172 ~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          172 HHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             TBSHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.28  E-value=1.1e-06  Score=72.69  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.++|+++|.+|||||||+|+|++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHc
Confidence            357999999999999999999984

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.28  E-value=3.6e-07  Score=87.73  Aligned_cols=92  Identities=13%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCC-CCCcEEEEEecCCCCC--hhhHHHH-
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPF-SSSRRILVLNKMDLAS--PTQFKEW-   95 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~-~~k~~IiVlNK~DL~~--~~~~~~~-   95 (298)
                      .-||| .++.+.+...+..+|++|+|+|++.+..       ....+...++.. ..+|+++|+||+|+.+  ....++. 
T Consensus       117 DTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~  195 (483)
T 3p26_A          117 DAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK  195 (483)
T ss_dssp             CCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHH
T ss_pred             ECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHH
Confidence            33777 6788888899999999999999987622       222222222112 2357999999999986  2222222 


Q ss_pred             ---HHHHHcc-----CCCEEEEecCCCcCHHH
Q 022351           96 ---ITFFDQQ-----NCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        96 ---~~~~~~~-----~~~vi~iSa~~~~gi~~  119 (298)
                         .+++...     +.+++++||+++.|+++
T Consensus       196 ~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          196 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence               2223222     34689999999999863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.28  E-value=9.2e-07  Score=72.48  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||+|+|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            457999999999999999999984

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.28  E-value=5.4e-07  Score=86.08  Aligned_cols=90  Identities=14%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN  116 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g  116 (298)
                      +.....+..+|++++|+|+..+....+..+...+.  .+|+++|+||+|+.+....... +.+ ....+++.+||+++.|
T Consensus       295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~G  370 (462)
T 3geh_A          295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQG  370 (462)
T ss_dssp             ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBS
T ss_pred             HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCC
Confidence            34456789999999999999887766665655433  4799999999999876533210 001 1245799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 022351          117 VKEFLKFLQAHVRN  130 (298)
Q Consensus       117 i~~L~~~l~~~i~~  130 (298)
                      +++|++.|.+.+..
T Consensus       371 i~eL~~~i~~~~~~  384 (462)
T 3geh_A          371 IDSLETAILEIVQT  384 (462)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.28  E-value=1.4e-06  Score=80.25  Aligned_cols=92  Identities=17%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             HHHhcCCCCeEEEEEeCCCCC--Cccc-HHHh-ccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCC
Q 022351           39 IADRMPLVDIILEVRDARIPF--SSEF-DQLR-NHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~--~~~~-~~l~-~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      +......+|.+++|+|+..+.  +... ..+. .+.. ..++|+++|+||+|+.....++...+.+...+.+++.+||++
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCC
Confidence            334455799999999987643  2111 1121 1111 127999999999999887666555555555677899999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      ++|++++++++.+.+..
T Consensus       320 g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999887754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.28  E-value=2e-07  Score=77.97  Aligned_cols=92  Identities=14%  Similarity=0.001  Sum_probs=61.3

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChh--------------hHHHHHHHHH
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPT--------------QFKEWITFFD  100 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~--------------~~~~~~~~~~  100 (298)
                      ....+..+|++++|+|+..+.+..+.  .+...+.  ..+.|+++|+||+|+.+..              ..+.......
T Consensus        85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  164 (201)
T 2q3h_A           85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE  164 (201)
T ss_dssp             GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH
Confidence            34578999999999999865332221  1111111  1378999999999997521              1112222222


Q ss_pred             ccCC-CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 QQNC-PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..+. +++.+||+++.|++++++.+.+.+.+
T Consensus       165 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          165 EIKAASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             HHTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            3455 78999999999999999999877654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.28  E-value=3e-07  Score=77.60  Aligned_cols=101  Identities=19%  Similarity=0.128  Sum_probs=64.8

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC--CCCCcEEEEEecCCCCChhhHHHH--------
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP--FSSSRRILVLNKMDLASPTQFKEW--------   95 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~--------   95 (298)
                      .||+ .+........+..+|++++|+|+..+.+...  ..+...+.  ..+.|+++|+||+|+.+.....+.        
T Consensus        80 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  158 (207)
T 2fv8_A           80 TAGQ-EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP  158 (207)
T ss_dssp             CTTC-TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC
T ss_pred             CCCc-HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCC
Confidence            3454 3333444567899999999999986432111  11111111  147999999999999764322211        


Q ss_pred             ------HHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           96 ------ITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        96 ------~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                            .+.....+. +++.+||+++.|+++++++|.+.+.
T Consensus       159 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          159 VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL  199 (207)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                  112223344 7899999999999999999987654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.28  E-value=7.5e-07  Score=76.09  Aligned_cols=63  Identities=21%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|.+.          .......+..|++.....+.+... ..+.|+||||...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~----------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   74 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN----------EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER   74 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC----------CCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence            34589999999999999999999841          111111222232222223333221 2588999999644

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.28  E-value=1.1e-06  Score=72.84  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHh
Confidence            4568999999999999999999984

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.28  E-value=3e-07  Score=90.50  Aligned_cols=101  Identities=16%  Similarity=0.166  Sum_probs=67.8

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-----------------h
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-----------------Q   91 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-----------------~   91 (298)
                      ||| ..+.......+..+|++|+|+|+..+..........++...+.|+++++||+|+.+..                 .
T Consensus        78 PGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           78 PGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             CTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             CCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            565 3333333456788999999999998765544333333334689999999999996420                 0


Q ss_pred             H--------HHHHHHHHccC---------------CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           92 F--------KEWITFFDQQN---------------CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        92 ~--------~~~~~~~~~~~---------------~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +        .+..+.+...+               .+++++||+++.|+++|+++|...++.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence            1        11222222222               268999999999999999999987764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.27  E-value=1.1e-06  Score=73.15  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhc
Confidence            4568999999999999999999984

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.27  E-value=1.3e-06  Score=71.40  Aligned_cols=90  Identities=12%  Similarity=0.017  Sum_probs=58.9

Q ss_pred             HhcCCCCeEEEEEeCCCCCCcccH-----HHhccCC--CCCCcEEEEEecCCCCC---hh-hHHHHHHHHHc-cCCCEEE
Q 022351           41 DRMPLVDIILEVRDARIPFSSEFD-----QLRNHHP--FSSSRRILVLNKMDLAS---PT-QFKEWITFFDQ-QNCPSFG  108 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~--~~~k~~IiVlNK~DL~~---~~-~~~~~~~~~~~-~~~~vi~  108 (298)
                      .++..+|++++|+|+..+.+..+.     .+.....  ..+.|+++|.||+|+.+   .. ..++..++... .+.+++.
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~  147 (178)
T 2iwr_A           68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE  147 (178)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred             HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence            456679999999999875432211     1211111  14789999999999932   11 11222222222 2568899


Q ss_pred             EecCCCcCHHHHHHHHHHHHHh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +||+++.|++++++.+.+.+.+
T Consensus       148 ~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          148 TXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHHHHHHH
Confidence            9999999999999998876654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.26  E-value=4.3e-07  Score=76.80  Aligned_cols=99  Identities=12%  Similarity=0.051  Sum_probs=60.3

Q ss_pred             chhhHHHHHH-HHHHhcCCCCeEEEEEeCCCCCCccc---HHHhcc-----CCCCCCcEEEEEecCCCCChhhHHHHHHH
Q 022351           28 YGPHMAAATR-AIADRMPLVDIILEVRDARIPFSSEF---DQLRNH-----HPFSSSRRILVLNKMDLASPTQFKEWITF   98 (298)
Q Consensus        28 fpghm~~~~~-~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~-----l~~~~k~~IiVlNK~DL~~~~~~~~~~~~   98 (298)
                      .||+ .+... .+..++..+|++++|+|+........   ..+...     ....+.|+++|+||+|+.+....+...+.
T Consensus        61 t~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  139 (214)
T 2fh5_B           61 LPGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ  139 (214)
T ss_dssp             CCCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             CCCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHH
Confidence            3566 44444 45567999999999999975211111   112211     11246899999999999754322222211


Q ss_pred             H----H-------------------c--------------c--CCCEEEEecCCC------cCHHHHHHHHHHH
Q 022351           99 F----D-------------------Q--------------Q--NCPSFGVNSHNK------DNVKEFLKFLQAH  127 (298)
Q Consensus        99 ~----~-------------------~--------------~--~~~vi~iSa~~~------~gi~~L~~~l~~~  127 (298)
                      +    .                   +              .  +.+++.+||+++      .|++++.++|.+.
T Consensus       140 l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          140 LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            1    1                   0              0  335788999999      9999999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.26  E-value=4.4e-07  Score=75.32  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=59.1

Q ss_pred             hcCCCCeEEEEEeCCCCCCccc-HHH-hccCCC---CCCcEEEEEecCCCCCh----hhHHHHHHHHHccC-CCEEEEec
Q 022351           42 RMPLVDIILEVRDARIPFSSEF-DQL-RNHHPF---SSSRRILVLNKMDLASP----TQFKEWITFFDQQN-CPSFGVNS  111 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~~---~~k~~IiVlNK~DL~~~----~~~~~~~~~~~~~~-~~vi~iSa  111 (298)
                      .+..+|++++|+|+..+.+..+ ..+ ..+...   .+.|+++|.||+|+...    ...+...+.....+ .+++.+||
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  161 (184)
T 3ihw_A           82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA  161 (184)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred             eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence            5566999999999987533222 112 111111   46899999999999421    11222333333444 68899999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q 022351          112 HNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++.|++++++.+.+.+.+
T Consensus       162 ~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          162 TYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999877654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.25  E-value=1.4e-07  Score=79.03  Aligned_cols=87  Identities=10%  Similarity=0.015  Sum_probs=57.8

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccCC-----CCCCcEEEEEecCCCCChhhH----H----HHHHHH-H----c
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVLNKMDLASPTQF----K----EWITFF-D----Q  101 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~----~----~~~~~~-~----~  101 (298)
                      ..++..+|++|+|+|+..+.......+..++.     ..+.|+++|.||+||.+.+..    .    ...+.+ +    .
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            46777899999999998762222222222221     247899999999999874321    1    111222 2    2


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .+.+++.+||++ .|+++++..+.+.
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHH
Confidence            345789999999 9999999887653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.25  E-value=4.6e-07  Score=77.87  Aligned_cols=104  Identities=19%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~   98 (298)
                      -|..+.+.+.......++..+|.+++|.|...+.+..+  .   .+... ...+.|++||.||+||....  ..++..++
T Consensus        66 iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~  144 (216)
T 4dkx_A           66 LWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK  144 (216)
T ss_dssp             EECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhH
Confidence            47766666666666678999999999999886533222  1   11111 12568999999999996432  12233333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .++.+..++.+||+++.|++++++.|.+.+..
T Consensus       145 a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          145 AKELNVMFIETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             HHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred             HHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            34456788999999999999999988766543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.25  E-value=1e-07  Score=90.15  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-ccCCCEEEEecCCC
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-QQNCPSFGVNSHNK  114 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-~~~~~vi~iSa~~~  114 (298)
                      .+.+...+..+|++|+|+|+  ........+...+...+.|+++|+||+|+.+.... +..+.+. ..+.+++.+||+++
T Consensus       104 ~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          104 VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCC
Confidence            34456788899999999998  33444444444443458999999999999865433 2223332 34678999999999


Q ss_pred             cCHHHHHHHHHHHHHh
Q 022351          115 DNVKEFLKFLQAHVRN  130 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~  130 (298)
                      .|++++++.|.+.+++
T Consensus       181 ~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          181 KGFDDIGKTISEILPG  196 (423)
T ss_dssp             TSTTTHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999887743

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.25  E-value=9.5e-07  Score=72.91  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999984

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.25  E-value=9.3e-07  Score=74.33  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh
Confidence            3468999999999999999999983

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.25  E-value=9.5e-07  Score=74.13  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHh
Confidence            3457999999999999999999984

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.24  E-value=1.4e-06  Score=90.74  Aligned_cols=102  Identities=16%  Similarity=0.085  Sum_probs=71.4

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCChhh-H----HHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASPTQ-F----KEWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~~-~----~~~~~~~~  100 (298)
                      .-||| .++...+...+..+|++|+|+|++.+......+....+...+.| +|+++||+|+.+... .    ++..+++.
T Consensus       365 DTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk  443 (1289)
T 3avx_A          365 DCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS  443 (1289)
T ss_dssp             ECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence            34777 67888888999999999999999987655544333322224677 789999999985322 1    22333343


Q ss_pred             ccC-----CCEEEEecCCC--------cCHHHHHHHHHHHHH
Q 022351          101 QQN-----CPSFGVNSHNK--------DNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~~-----~~vi~iSa~~~--------~gi~~L~~~l~~~i~  129 (298)
                      ..+     .+++++||+++        .|+.+|++.|.+.++
T Consensus       444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            333     57999999999        568888888876553

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.24  E-value=1e-06  Score=83.57  Aligned_cols=72  Identities=21%  Similarity=0.380  Sum_probs=44.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      ...++|+++|.+|+|||||+|+|+.. +.+...          +.++.        ........+|+|.+.....+. .+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            45689999999999999999999642 111100          00000        001122346888887754432 33


Q ss_pred             CCEEEEeCCCCC
Q 022351          200 PNIYVLDTPGIL  211 (298)
Q Consensus       200 ~~~~liDTPGi~  211 (298)
                      ..+.++||||..
T Consensus        95 ~~~~iiDTPGh~  106 (439)
T 3j2k_7           95 KHFTILDAPGHK  106 (439)
T ss_pred             eEEEEEECCChH
Confidence            469999999964

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.24  E-value=1.3e-07  Score=79.26  Aligned_cols=61  Identities=21%  Similarity=0.207  Sum_probs=37.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeee--EEEEEccC-CCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDI--YSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~--~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           .. ......|++|.+.  ..+.+... ..+.|+||||...
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   94 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFAD-----------DT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER   94 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBC-----------CC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc-----------CC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence            3468999999999999999999983           11 1111122223222  23333221 1488999999644

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.22  E-value=4.8e-07  Score=83.19  Aligned_cols=93  Identities=16%  Similarity=0.340  Sum_probs=62.7

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCC-----CCccc---HHHhccCC-CCCCcEEEEEecCCCCChhh-HHHHHHHHHccCCCE
Q 022351           37 RAIADRMPLVDIILEVRDARIP-----FSSEF---DQLRNHHP-FSSSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPS  106 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p-----~~~~~---~~l~~~l~-~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~v  106 (298)
                      ....+.++++|++|+|+|+...     +....   .++..+.. ..++|+++|+||+|+..... .+.+.+.+ ....++
T Consensus       228 ~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l-~~~~~v  306 (342)
T 1lnz_A          228 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL-TDDYPV  306 (342)
T ss_dssp             HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC-CSCCCB
T ss_pred             HHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHh-hcCCCE
Confidence            3445556779999999999652     11111   12222211 24799999999999986532 33333333 112578


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHh
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +.+||+++.|+++|++.|.+.+.+
T Consensus       307 ~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          307 FPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             EEEECCCCcCHHHHHHHHHHHHhh
Confidence            999999999999999999888754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.22  E-value=8.9e-08  Score=85.21  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCHH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVK  118 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi~  118 (298)
                      ...+|++++|+|+..+  ..+..+...+...+.|+++|+||+|+.+...    .+.+.+   ..+.+++++||+++.|++
T Consensus        83 ~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~i~~SA~~g~gi~  157 (274)
T 3i8s_A           83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA---RLGCPVIPLVSTRGRGIE  157 (274)
T ss_dssp             HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH---HHTSCEEECCCGGGHHHH
T ss_pred             hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH---hcCCCEEEEEcCCCCCHH
Confidence            4899999999999763  2222233332235899999999999864422    222222   346899999999999999


Q ss_pred             HHHHHHHHHH
Q 022351          119 EFLKFLQAHV  128 (298)
Q Consensus       119 ~L~~~l~~~i  128 (298)
                      +|++.+.+.+
T Consensus       158 el~~~i~~~~  167 (274)
T 3i8s_A          158 ALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHHHH
Confidence            9999886543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.21  E-value=1.3e-06  Score=73.55  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||+|+|.+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhc
Confidence            457999999999999999999984

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.21  E-value=1.8e-06  Score=72.09  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|.+.+
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999998873

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.20  E-value=9.7e-07  Score=74.76  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            3468999999999999999999983

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.20  E-value=2.1e-06  Score=72.87  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ...++|+++|.+|||||||+|+|.
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHH
Confidence            456899999999999999999998

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.20  E-value=1.6e-06  Score=71.71  Aligned_cols=22  Identities=27%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|.|.+
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999983

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.19  E-value=1.9e-06  Score=79.42  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.+|||||||+|+|.+
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4999999999999999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.19  E-value=1.3e-06  Score=82.23  Aligned_cols=58  Identities=29%  Similarity=0.511  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      -.++++|.||||||||+|+|.+            ....++..|++|.....  +.......+.++||||+..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg------------~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~  217 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTR------------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE  217 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS------------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHc------------CCccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence            4689999999999999999983            22356788888876553  3333335689999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.18  E-value=9.9e-07  Score=87.12  Aligned_cols=72  Identities=22%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCcc--------ceeecCCCCeeeeeEEEEE-ccC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKLR--------HATVSPQPGETKDIYSLKI-ASH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~~--------~~~~~~~pg~T~~~~~~~~-~~~  199 (298)
                      ...++|+++|.+|+|||||+|+|+.. +.+...          ..|++.        .......+|+|.+.....+ ..+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            55789999999999999999999832 100000          000000        0000113688877664333 234


Q ss_pred             CCEEEEeCCCCC
Q 022351          200 PNIYVLDTPGIL  211 (298)
Q Consensus       200 ~~~~liDTPGi~  211 (298)
                      ..+.|+||||..
T Consensus       245 ~~~~iiDTPG~e  256 (611)
T 3izq_1          245 ANFTIVDAPGHR  256 (611)
T ss_dssp             CEEEEEECCSSS
T ss_pred             ceEEEEECCCCc
Confidence            469999999974

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.18  E-value=6e-07  Score=75.07  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=6.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||+|+|.+
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~   42 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTS   42 (208)
T ss_dssp             EEEEEEEC----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            457999999999999999999983

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.17  E-value=3.4e-06  Score=69.91  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|+++|.+|||||||+|.++.
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            5578999999999999999999984

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.17  E-value=2.3e-06  Score=83.08  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             CcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          114 KDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|++.+.+++.+......+.+.......++|+++|.||||||||+|+|.+
T Consensus        13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~   63 (535)
T 3dpu_A           13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG   63 (535)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred             HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhc
Confidence            467888888887765421111111234568999999999999999999983

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.16  E-value=2.9e-06  Score=70.99  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      .++++++|.+|||||||+|.|.+.          .......+..|++.....+.+.+. -.+.++||||...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~----------~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   66 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN----------EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER   66 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS----------CCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence            478999999999999999999841          111112222233322223333321 1367899999643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.16  E-value=6.3e-06  Score=67.72  Aligned_cols=87  Identities=13%  Similarity=0.079  Sum_probs=57.2

Q ss_pred             cCCCCeEEEEEeCCCCCC-----------cccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccC-----C
Q 022351           43 MPLVDIILEVRDARIPFS-----------SEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQN-----C  104 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~-----------~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~-----~  104 (298)
                      ...+++++.|+|+.....           ..+..+...+...+.|+++|+||+|+....  ..+.+.+.+. ..     .
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFE-VPLSEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHT-CCGGGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhh-hhhhccCC
Confidence            566889999999753110           011112222222579999999999998643  3334444331 11     1


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++.+||+++.|++++++++.+.+.+
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcch
Confidence            47999999999999999999888765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.16  E-value=1.4e-06  Score=76.85  Aligned_cols=81  Identities=17%  Similarity=0.084  Sum_probs=58.7

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ..+|++++|+|+..+.  ....+...+...+.|+++|+||+|+.....    .+.+.+   ..+.+++++||+++.|+++
T Consensus        82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---~lg~~vi~~SA~~g~gi~e  156 (258)
T 3a1s_A           82 GDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQK---HLGIPVVFTSSVTGEGLEE  156 (258)
T ss_dssp             SCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHH---HHCSCEEECCTTTCTTHHH
T ss_pred             cCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHH---HcCCCEEEEEeeCCcCHHH
Confidence            6899999999998642  222232222235899999999999864321    222322   3478999999999999999


Q ss_pred             HHHHHHHHHH
Q 022351          120 FLKFLQAHVR  129 (298)
Q Consensus       120 L~~~l~~~i~  129 (298)
                      +++.+.+.+.
T Consensus       157 l~~~i~~~~~  166 (258)
T 3a1s_A          157 LKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987664

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.15  E-value=3.2e-06  Score=71.20  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|.|..
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999983

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.15  E-value=1.1e-06  Score=71.93  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|++..
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3568999999999999999999984

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.14  E-value=3.2e-07  Score=76.24  Aligned_cols=91  Identities=16%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccc-HHH-hccCC-----CCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEE
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEF-DQL-RNHHP-----FSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~l~-----~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~i  109 (298)
                      +...+..+|++++|+|+..+.+..+ ..+ ..+..     ..+.|+++|+||+|+....  ..++..++.+..+++++.+
T Consensus        85 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  164 (187)
T 3c5c_A           85 CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV  164 (187)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEE
Confidence            3467889999999999986432111 111 11111     1478999999999996432  1222333334456789999


Q ss_pred             ec-CCCcCHHHHHHHHHHHHH
Q 022351          110 NS-HNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       110 Sa-~~~~gi~~L~~~l~~~i~  129 (298)
                      || +++.|++++++.+.+.+.
T Consensus       165 Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          165 SACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             CSSSCSHHHHHHHHHHHHHHH
T ss_pred             eecCccccHHHHHHHHHHHHh
Confidence            99 899999999999877653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.14  E-value=1.4e-06  Score=83.55  Aligned_cols=72  Identities=22%  Similarity=0.345  Sum_probs=43.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCC--------ccceeecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGK--------LRHATVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~--------~~~~~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      ...++|+++|.+|+|||||+|+|+.. +.+...          ..|.        .........+|+|.+.....+. ..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            46789999999999999999999742 111100          0000        0112334556888877655443 34


Q ss_pred             CCEEEEeCCCCC
Q 022351          200 PNIYVLDTPGIL  211 (298)
Q Consensus       200 ~~~~liDTPGi~  211 (298)
                      ..+.|+||||..
T Consensus       111 ~~~~iiDTPG~~  122 (483)
T 3p26_A          111 ANFTIVDAPGHR  122 (483)
T ss_dssp             CEEEEECCCCCG
T ss_pred             ceEEEEECCCcH
Confidence            469999999983

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.14  E-value=2e-06  Score=72.78  Aligned_cols=25  Identities=20%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|.+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc
Confidence            3468999999999999999999984

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.14  E-value=7.2e-07  Score=80.41  Aligned_cols=95  Identities=17%  Similarity=0.181  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------HHHhccCCCCCCcEEEEEecCCCCChhh--------------H
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEF------DQLRNHHPFSSSRRILVLNKMDLASPTQ--------------F   92 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------~~l~~~l~~~~k~~IiVlNK~DL~~~~~--------------~   92 (298)
                      .+.......++..+|++++|+|+..+.+..+      ..+...  ..++|+++|+||+|+.+...              .
T Consensus       214 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~  291 (332)
T 2wkq_A          214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY  291 (332)
T ss_dssp             GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH
T ss_pred             hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccH
Confidence            4444555567999999999999987533222      112222  13799999999999965321              1


Q ss_pred             HHHHHHHHccCC-CEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           93 KEWITFFDQQNC-PSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        93 ~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +...++.+..+. +++.+||+++.|++++++.|.+.+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          292 PQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            122233334455 7899999999999999999877653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.13  E-value=2.5e-06  Score=72.47  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|++
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhc
Confidence            3468999999999999999999984

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.13  E-value=2e-06  Score=81.54  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-------CCcccHHHhccCCCCC-CcEEEEEecCCCCCh----hh----
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSS-SRRILVLNKMDLASP----TQ----   91 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-------~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~----~~----   91 (298)
                      -||| .++...+...+..+|++|+|+|++.+       ..........++...+ +++++++||+|+.+.    +.    
T Consensus        91 tpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~  169 (435)
T 1jny_A           91 APGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI  169 (435)
T ss_dssp             CSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred             CCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHH
Confidence            4677 66778888999999999999999874       2222222222111124 468999999999862    22    


Q ss_pred             HHHHHHHHHccC-----CCEEEEecCCCcCHH
Q 022351           92 FKEWITFFDQQN-----CPSFGVNSHNKDNVK  118 (298)
Q Consensus        92 ~~~~~~~~~~~~-----~~vi~iSa~~~~gi~  118 (298)
                      .++..+++...+     .+++++||+++.|+.
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~  201 (435)
T 1jny_A          170 VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  201 (435)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence            223333443334     468999999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.12  E-value=2e-06  Score=71.80  Aligned_cols=24  Identities=42%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.||||||||+|.+.+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            457999999999999999999984

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.11  E-value=3.9e-06  Score=69.94  Aligned_cols=62  Identities=21%  Similarity=0.239  Sum_probs=37.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi~~  212 (298)
                      ..++++++|.+|||||||+|.|.+.          .......+..|++.....+.+.+.. .+.++||||...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~----------~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~   90 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRN----------EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER   90 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS----------CCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC----------CCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence            3579999999999999999999841          1111222333333222334343211 345799999754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.11  E-value=3.4e-06  Score=69.98  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||+|+|.+
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            457999999999999999999984

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.11  E-value=7.2e-07  Score=87.81  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      ...++|+++|.+|+|||||+|+|+.. +.+...          ..|+.        ........+|+|.+.....+. .+
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            45679999999999999999999741 111100          00000        000111257888887654332 23


Q ss_pred             CCEEEEeCCCCC
Q 022351          200 PNIYVLDTPGIL  211 (298)
Q Consensus       200 ~~~~liDTPGi~  211 (298)
                      ..+.|+||||..
T Consensus       255 ~~i~iiDTPGh~  266 (592)
T 3mca_A          255 KIYEIGDAPGHR  266 (592)
T ss_dssp             ----CCEEESSS
T ss_pred             eEEEEEECCChH
Confidence            468999999964

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.10  E-value=5e-06  Score=76.58  Aligned_cols=85  Identities=14%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHc-----------cCCCEEEEe
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQ-----------QNCPSFGVN  110 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-----------~~~~vi~iS  110 (298)
                      .+..+|++++|+|+......  ..+...  ....|.++|+||+|+.+........+.+..           .+.+++++|
T Consensus       189 ~~~~aD~vl~V~d~~~~~~~--~~l~~~--~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS  264 (355)
T 3p32_A          189 VANMVDTFVLLTLARTGDQL--QGIKKG--VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMS  264 (355)
T ss_dssp             HHTTCSEEEEEEESSTTCTT--TTCCTT--SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEB
T ss_pred             HHHhCCEEEEEECCCCCccH--HHHHHh--HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEE
Confidence            35889999999997643211  111111  135689999999999765443333332221           135799999


Q ss_pred             cCCCcCHHHHHHHHHHHHHh
Q 022351          111 SHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i~~  130 (298)
                      |+++.|+++|.+.|.+.+..
T Consensus       265 A~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          265 AVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGGTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999888765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.10  E-value=5.7e-06  Score=76.60  Aligned_cols=102  Identities=12%  Similarity=0.148  Sum_probs=66.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH------HHhccCCCCCCcEEEEEecCCCCChhhHH--HHHH-HH
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD------QLRNHHPFSSSRRILVLNKMDLASPTQFK--EWIT-FF   99 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~------~l~~~l~~~~k~~IiVlNK~DL~~~~~~~--~~~~-~~   99 (298)
                      |.++.+..+.+.+.+..+|++++|+|+..+......      .+...+...++|+++|+||+|+.+....+  .... ..
T Consensus       241 p~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~  320 (364)
T 2qtf_A          241 PPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLS  320 (364)
T ss_dssp             CGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHH
Confidence            444444556667789999999999999876411111      11122222578999999999998643111  1111 11


Q ss_pred             Hcc---CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQ---NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~---~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...   ..+++++||+++.|+++|++.|.+.+..
T Consensus       321 ~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          321 KELYSPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            122   2357899999999999999999887765

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.09  E-value=1.5e-06  Score=82.41  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +...|+|+|.+|+|||||+|.|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            4567899999999999999999963

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.09  E-value=4.7e-07  Score=87.91  Aligned_cols=60  Identities=27%  Similarity=0.388  Sum_probs=43.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE--ccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI--ASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~--~~~~~~~liDTPGi~~  212 (298)
                      +..+|+++|.+|+|||||+|+|++.            .......||+|.++..+.+  ..+..+.++||||...
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~------------~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~   64 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKT------------QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA   64 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHH------------HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC------------CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence            3468999999999999999999842            1223356778877664333  2344689999999643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.08  E-value=3.4e-08  Score=82.91  Aligned_cols=92  Identities=20%  Similarity=0.142  Sum_probs=53.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCccc-HHH-hcc--CCCCCCcEEEEEecCCCCChhhH--HHHHHHHHccCCCEEEEe
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEF-DQL-RNH--HPFSSSRRILVLNKMDLASPTQF--KEWITFFDQQNCPSFGVN  110 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~-~~l-~~~--l~~~~k~~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iS  110 (298)
                      ......+..+|++++|+|+.++.+... ..+ ..+  ....+.|+++|+||+|+.+....  +.........+.+++.+|
T Consensus        97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS  176 (199)
T 3l0i_B           97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS  176 (199)
T ss_dssp             CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred             HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEE
Confidence            334457889999999999987533211 111 111  11247899999999999754311  112223334567899999


Q ss_pred             cCCCcCHHHHHHHHHHHH
Q 022351          111 SHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i  128 (298)
                      |+++.|+++++++|.+.+
T Consensus       177 A~~g~gv~~l~~~l~~~l  194 (199)
T 3l0i_B          177 AKNATNVEQSFMTMAAEI  194 (199)
T ss_dssp             C---HHHHHHHHHHTTTT
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999999886544

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.08  E-value=6.2e-06  Score=70.38  Aligned_cols=90  Identities=26%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             HhcCCCCeEEEEEeCCCCCCccc-HHH----hccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecCC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEF-DQL----RNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSHN  113 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~-~~l----~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~  113 (298)
                      .+...+|.+|+|+|..++.+... ..+    .......+.|+++|.||+||.....  .++...+....+.+++.+||++
T Consensus       107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~  186 (211)
T 2g3y_A          107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV  186 (211)
T ss_dssp             CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence            45778999999999876422111 111    1111114789999999999964311  1221222223456889999999


Q ss_pred             CcCHHHHHHHHHHHHHh
Q 022351          114 KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       114 ~~gi~~L~~~l~~~i~~  130 (298)
                      +.|++++++.+.+.+..
T Consensus       187 g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          187 QHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999877654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.07  E-value=5.7e-07  Score=73.09  Aligned_cols=80  Identities=20%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ..+|++++|+|+....  ....+...+...+.|+++|.||+|+....    ..+.+.+   ..+.+++.+||+++.|+++
T Consensus        80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~~~v~~  154 (165)
T 2wji_A           80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEE  154 (165)
T ss_dssp             HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHH
T ss_pred             CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---HhCCCEEEEEcCCCCCHHH
Confidence            3799999999987521  11112211112479999999999985321    1233333   3357899999999999999


Q ss_pred             HHHHHHHHH
Q 022351          120 FLKFLQAHV  128 (298)
Q Consensus       120 L~~~l~~~i  128 (298)
                      +++.+.+.+
T Consensus       155 l~~~l~~~~  163 (165)
T 2wji_A          155 LKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999887543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.07  E-value=4.1e-06  Score=71.54  Aligned_cols=24  Identities=42%  Similarity=0.545  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ...++|+++|.||||||||+|.+.
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            345899999999999999999998

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.07  E-value=4e-06  Score=80.19  Aligned_cols=93  Identities=18%  Similarity=0.124  Sum_probs=51.8

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------cccHHHhccCCCCCCc-EEEEEecCCCCC----hhhH--
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEFDQLRNHHPFSSSR-RILVLNKMDLAS----PTQF--   92 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~~~l~~~l~~~~k~-~IiVlNK~DL~~----~~~~--   92 (298)
                      .-||| .++.+.+...+..+|++|+|+|++.+..       ....+....+...+.| +++++||+|+.+    .+..  
T Consensus       127 DtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~  205 (467)
T 1r5b_A          127 DAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE  205 (467)
T ss_dssp             CCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHH
T ss_pred             ECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHH
Confidence            34777 6788888888999999999999987631       1221211111124666 899999999964    2221  


Q ss_pred             --HHHHHHHHcc-C------CCEEEEecCCCcCHHHH
Q 022351           93 --KEWITFFDQQ-N------CPSFGVNSHNKDNVKEF  120 (298)
Q Consensus        93 --~~~~~~~~~~-~------~~vi~iSa~~~~gi~~L  120 (298)
                        ++..+++... +      .+++++||+++.|+.++
T Consensus       206 i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          206 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence              2233333333 3      45899999999998753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.06  E-value=3.7e-06  Score=76.69  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=34.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~  211 (298)
                      ..++|+++|.+|||||||+|+|.+           ......  .|  |.......+. ....+.|+||||-.
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~-----------~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~  220 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKL-----------GEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD  220 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCS-----------SCCEEE--EE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred             CcceEEEECCCCccHHHHHHHHhC-----------CCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCH
Confidence            456999999999999999999983           222222  22  3333322222 22358899999943

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.06  E-value=3.5e-07  Score=75.56  Aligned_cols=97  Identities=12%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------HHHhccCCCCCCcEEEEEecCCCCChh------------
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF------DQLRNHHPFSSSRRILVLNKMDLASPT------------   90 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------~~l~~~l~~~~k~~IiVlNK~DL~~~~------------   90 (298)
                      ||+ .+........+..+|++++|+|+..+.+..+      ..+...  ..+.|+++|.||+|+.+..            
T Consensus        63 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  139 (184)
T 1m7b_A           63 SGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQT  139 (184)
T ss_dssp             CCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             CCC-hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence            444 3333334467899999999999986532221      112222  2478999999999996421            


Q ss_pred             --hHHHHHHHHHccC-CCEEEEecC-CCcCHHHHHHHHHHHH
Q 022351           91 --QFKEWITFFDQQN-CPSFGVNSH-NKDNVKEFLKFLQAHV  128 (298)
Q Consensus        91 --~~~~~~~~~~~~~-~~vi~iSa~-~~~gi~~L~~~l~~~i  128 (298)
                        ..++..++.+..+ .+++.+||+ ++.|++++++.+.+.+
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence              1122222222334 578999998 6899999999887654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.02  E-value=3.7e-06  Score=77.73  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|+|||||+|+|++
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~   59 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFL   59 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTT
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhC
Confidence            4568999999999999999999975

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.02  E-value=1.3e-06  Score=73.86  Aligned_cols=92  Identities=13%  Similarity=0.169  Sum_probs=59.9

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCccc------HHHhccCCCCCCcEEEEEecCCCCChh--------------hHHH
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEF------DQLRNHHPFSSSRRILVLNKMDLASPT--------------QFKE   94 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------~~l~~~l~~~~k~~IiVlNK~DL~~~~--------------~~~~   94 (298)
                      ........+..+|++|+|+|+..+.+..+      ..+...  ..+.|+++|.||+|+.+..              ..++
T Consensus        89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  166 (205)
T 1gwn_A           89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQ  166 (205)
T ss_dssp             GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred             hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHH
Confidence            33334467899999999999986532211      112222  1478999999999996421              1122


Q ss_pred             HHHHHHccC-CCEEEEecC-CCcCHHHHHHHHHHHH
Q 022351           95 WITFFDQQN-CPSFGVNSH-NKDNVKEFLKFLQAHV  128 (298)
Q Consensus        95 ~~~~~~~~~-~~vi~iSa~-~~~gi~~L~~~l~~~i  128 (298)
                      ..++.+..+ .+++.+||+ ++.|++++++.+.+.+
T Consensus       167 ~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          167 GANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             HHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            222222334 578999998 6899999999887654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.01  E-value=1.7e-06  Score=85.39  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=60.2

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCC-------CCcccHHHhccCCCCC-CcEEEEEecCCCCCh--hhHH----
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIP-------FSSEFDQLRNHHPFSS-SRRILVLNKMDLASP--TQFK----   93 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p-------~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~--~~~~----   93 (298)
                      -||| .+..+.+...+..+|++|+|+|++.+       ......+...++...+ +++++|+||+|+.+.  ...+    
T Consensus       252 TPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~  330 (611)
T 3izq_1          252 APGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKS  330 (611)
T ss_dssp             CCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHH
T ss_pred             CCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHH
Confidence            3777 67788888899999999999999863       1222222222211234 558999999999862  2222    


Q ss_pred             HHHHHHHcc-----CCCEEEEecCCCcCHHHH
Q 022351           94 EWITFFDQQ-----NCPSFGVNSHNKDNVKEF  120 (298)
Q Consensus        94 ~~~~~~~~~-----~~~vi~iSa~~~~gi~~L  120 (298)
                      ....++...     ..+++++||++|.|+.++
T Consensus       331 ~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          331 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            222233222     347899999999998754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.01  E-value=5.9e-06  Score=75.66  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..++++|.||+|||||+|.|.+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999999974

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.01  E-value=6.7e-06  Score=70.51  Aligned_cols=24  Identities=25%  Similarity=0.449  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.++|+++|.+|||||||++.+..
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHh
Confidence            457999999999999999999983

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.01  E-value=1.7e-06  Score=76.47  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=58.4

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCChhh----HHHHHHHHHccCCCEEEEecCCCcCH
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASPTQ----FKEWITFFDQQNCPSFGVNSHNKDNV  117 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~~~----~~~~~~~~~~~~~~vi~iSa~~~~gi  117 (298)
                      ..++|++++|+|+..+.  .+..+...+...+ .|+++|+||+|+.+...    ...+.+   ..+.+++++||+++.|+
T Consensus        79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---ELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HHSSCEEECBGGGTBTH
T ss_pred             ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH---HcCCcEEEEEeCCCCCH
Confidence            48899999999998641  2222211111234 99999999999864321    222222   34789999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 022351          118 KEFLKFLQAHVRN  130 (298)
Q Consensus       118 ~~L~~~l~~~i~~  130 (298)
                      +++++.+...+..
T Consensus       154 ~~l~~~i~~~~~~  166 (271)
T 3k53_A          154 EELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.24  E-value=8.5e-07  Score=74.45  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|+|..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4568999999999999999999983

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.99  E-value=4e-06  Score=78.61  Aligned_cols=69  Identities=19%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCC-cc---c-----eeecCCCCeeeeeEEEEEc-cCCCEEEEeCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGK-LR---H-----ATVSPQPGETKDIYSLKIA-SHPNIYVLDTPG  209 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~-~~---~-----~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPG  209 (298)
                      ...++|+++|.+|+|||||+|+|++...    ..+. ..   .     ......+|+|.+.....+. ....+.|+||||
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~----~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG   84 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAA----AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG   84 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHH----HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhh----hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence            5678999999999999999999985210    0010 00   0     0001245667666544443 335699999999


Q ss_pred             CCC
Q 022351          210 ILP  212 (298)
Q Consensus       210 i~~  212 (298)
                      ...
T Consensus        85 ~~~   87 (405)
T 2c78_A           85 HAD   87 (405)
T ss_dssp             SGG
T ss_pred             hHH
Confidence            753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.98  E-value=1.7e-05  Score=69.11  Aligned_cols=93  Identities=12%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHH-H----hccCCCCCCcEEEEEecCCCCChhhHH---HHHH-------H---
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQ-L----RNHHPFSSSRRILVLNKMDLASPTQFK---EWIT-------F---   98 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l----~~~l~~~~k~~IiVlNK~DL~~~~~~~---~~~~-------~---   98 (298)
                      ..+.+.+.. +++++|+|+.......... .    .......+.|.++|+||+|+.+....+   ++++       .   
T Consensus       130 ~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~  208 (262)
T 1yrb_A          130 VRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKL  208 (262)
T ss_dssp             HHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhc
Confidence            344456677 9999999987543332211 0    011111368999999999998754322   2211       1   


Q ss_pred             ---------------HHc--cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 ---------------FDQ--QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ---------------~~~--~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                                     ++.  ...+++++||+++.|+++|+++|.+.++.
T Consensus       209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          209 DPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence                           112  22378999999999999999999887765

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.96  E-value=1.3e-06  Score=83.29  Aligned_cols=92  Identities=17%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-------ccHHHhccCCCCCCc-EEEEEecCCCCC--hhhHH---
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS-------EFDQLRNHHPFSSSR-RILVLNKMDLAS--PTQFK---   93 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~-------~~~~l~~~l~~~~k~-~IiVlNK~DL~~--~~~~~---   93 (298)
                      .-||| .++.+.+...+..+|++|+|+|++.+...       ...+...++...+.| +++|+||+|+.+  .+..+   
T Consensus        91 DtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~  169 (458)
T 1f60_A           91 DAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV  169 (458)
T ss_dssp             ECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHH
T ss_pred             ECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHH
Confidence            34777 67888888999999999999999864211       121211111123555 899999999973  33222   


Q ss_pred             -HHHHHHHccC-----CCEEEEecCCCcCHHH
Q 022351           94 -EWITFFDQQN-----CPSFGVNSHNKDNVKE  119 (298)
Q Consensus        94 -~~~~~~~~~~-----~~vi~iSa~~~~gi~~  119 (298)
                       +..+++...+     .+++++||+++.|+.+
T Consensus       170 ~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          170 KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence             2223333333     5799999999998763

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.95  E-value=2.4e-06  Score=70.58  Aligned_cols=105  Identities=20%  Similarity=0.103  Sum_probs=67.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc---HHHhccCC-CCCCcEEEEEecCCCCChhhHH----HHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF---DQLRNHHP-FSSSRRILVLNKMDLASPTQFK----EWIT   97 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~----~~~~   97 (298)
                      -|....+.+.......++..+|++++|+|...+..+..   ..+..+.. ..+.|+++|.||+|+.+.....    ...+
T Consensus        60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  139 (184)
T 2zej_A           60 VWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK  139 (184)
T ss_dssp             EEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHH
Confidence            46555555554444556778999999999876532221   11111111 1478999999999997654432    2222


Q ss_pred             HH-HccCCC----EEEEecCCCc-CHHHHHHHHHHHHHh
Q 022351           98 FF-DQQNCP----SFGVNSHNKD-NVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~-~~~~~~----vi~iSa~~~~-gi~~L~~~l~~~i~~  130 (298)
                      .+ +..+.+    ++.+||+++. ++++|.+.+.+.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            23 234555    8899999996 999999998877654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.94  E-value=2.3e-05  Score=73.68  Aligned_cols=66  Identities=27%  Similarity=0.324  Sum_probs=38.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~  213 (298)
                      ....++++|.+|+|||||+|+|.+.....     .+. .... .+.+|+....++....+++.++|+||+..+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~-----~Gs-I~~~-g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~  133 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEE-----EGA-AKTG-VVEVTMERHPYKHPNIPNVVFWDLPGIGST  133 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTS-----TTS-CCCC-C----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcc-----Cce-EEEC-CeecceeEEeccccccCCeeehHhhcccch
Confidence            45689999999999999999998632111     011 1111 111233222222222346899999998653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.93  E-value=2.3e-06  Score=70.66  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||+|.|.+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHh
Confidence            3468999999999999999998874

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.92  E-value=2.9e-06  Score=75.38  Aligned_cols=80  Identities=16%  Similarity=0.116  Sum_probs=56.0

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ..+|++++|+|+...  ..+..+...+...+.|+++|+||+|+....    ..+.+.+   ..+.+++++||+++.|+++
T Consensus        79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~gi~e  153 (272)
T 3b1v_A           79 QRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY---HLGVPVVATSALKQTGVDQ  153 (272)
T ss_dssp             TCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBTTTTBSHHH
T ss_pred             CCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---HcCCCEEEEEccCCCCHHH
Confidence            579999999999753  112222222223589999999999985432    2233333   3467899999999999999


Q ss_pred             HHHHHHHHH
Q 022351          120 FLKFLQAHV  128 (298)
Q Consensus       120 L~~~l~~~i  128 (298)
                      +++.+.+.+
T Consensus       154 l~~~i~~~~  162 (272)
T 3b1v_A          154 VVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHHH
Confidence            999987543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.92  E-value=4.5e-06  Score=73.93  Aligned_cols=82  Identities=9%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             CCCeEEEEEeCCC-CCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHH----HHHHHccCCCEEEEecCCCcCHHH
Q 022351           45 LVDIILEVRDARI-PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEW----ITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        45 ~aDlVl~VvDa~~-p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~----~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ++|++++++|... ++...+..+.+.+.. ++|+++|+||+|+.........    .+.+...+++++.+|+.+++|+++
T Consensus       115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~  193 (274)
T 3t5d_A          115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENK  193 (274)
T ss_dssp             CCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC----------
T ss_pred             ceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHH
Confidence            4788988886553 555555555555543 8999999999999877655433    334445677888899999999999


Q ss_pred             HHHHHHHH
Q 022351          120 FLKFLQAH  127 (298)
Q Consensus       120 L~~~l~~~  127 (298)
                      +.+.|.+.
T Consensus       194 l~~~l~~~  201 (274)
T 3t5d_A          194 LVKKIKDR  201 (274)
T ss_dssp             -CHHHHHT
T ss_pred             HHHHHhcC
Confidence            98888654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.92  E-value=9.8e-06  Score=75.76  Aligned_cols=66  Identities=23%  Similarity=0.275  Sum_probs=42.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc--------ceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR--------HATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI  210 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~--------~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi  210 (298)
                      +.++|+++|.+|+|||||+|+|++...    ..+...        ........|.|.+...+.+. ....+.|+||||.
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~----~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~   76 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILA----EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH   76 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHH----HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhh----hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh
Confidence            357999999999999999999985210    001000        01111246778776654443 3456999999997

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.92  E-value=1.1e-05  Score=78.32  Aligned_cols=62  Identities=18%  Similarity=0.105  Sum_probs=47.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      .-||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++++||+|+...
T Consensus        88 DTPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           88 DTPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred             ECCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence            34777 455566778899999999999999876655555555544568999999999999753

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.92  E-value=2.3e-06  Score=82.34  Aligned_cols=60  Identities=23%  Similarity=0.328  Sum_probs=41.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~  212 (298)
                      +..+|+++|.+|+|||||+|+|++..            ...+..+|+|.++..+.+. .+..+.++||||...
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~   63 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA   63 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH------------HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC------------CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence            45689999999999999999998421            1122345666665533332 344689999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.91  E-value=7.9e-06  Score=74.85  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..++++|.||+|||||+|.|.+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999999999974

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.91  E-value=1.4e-05  Score=75.22  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC---CCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH---PNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~---~~~~liDTPGi~~  212 (298)
                      ++++++|.+|+|||||+|+|++....       + .......|+.++....+.....   +.+.++||||+..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~-------g-~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFE-------G-EPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCcccc-------C-CcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence            45999999999999999999853100       0 1112224566665444333222   2588999999975

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.89  E-value=2.2e-05  Score=66.99  Aligned_cols=101  Identities=8%  Similarity=-0.067  Sum_probs=62.3

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-cccHHH---hccCCC----CCCcEEEEEecC-CCCChhhHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFS-SEFDQL---RNHHPF----SSSRRILVLNKM-DLASPTQFKEWITF   98 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-~~~~~l---~~~l~~----~~k~~IiVlNK~-DL~~~~~~~~~~~~   98 (298)
                      --|...+....++.+..++|.||||||+.+... ..-.++   ..++..    .+.|++|+.||. |+...-...+..+.
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            344555666667789999999999999976422 112223   333321    467999999996 67543333344444


Q ss_pred             HH----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FD----QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~----~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.    ...+.+..+||.+|+|+.+-++||.+.+
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            32    2345688999999999999999987554

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.89  E-value=4.6e-05  Score=68.42  Aligned_cols=60  Identities=22%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCC--CEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHP--NIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~--~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|.+..           ..  .....++||.+.....+. .+.  .+.++||||...
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~-----------~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~  215 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTT-----------NA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED  215 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHH-----------SC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred             cceeEEEEECCCCCChHHHHHHHHh-----------CC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence            4568999999999999999999983           11  122233444433322221 122  355999999754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.87  E-value=3.7e-06  Score=80.23  Aligned_cols=72  Identities=31%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhh----------hhcCCc--cce------eecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITA----------AEKGKL--RHA------TVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~----------~~~~~~--~~~------~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      ...++|+++|.+|+|||||+|+|+.. +.+..          .+.|.+  +.+      .....+|.|.+.....+. ..
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            34689999999999999999999842 11110          000110  000      011136777666543332 23


Q ss_pred             CCEEEEeCCCCC
Q 022351          200 PNIYVLDTPGIL  211 (298)
Q Consensus       200 ~~~~liDTPGi~  211 (298)
                      ..+.|+||||..
T Consensus        85 ~~~~iiDtPGh~   96 (458)
T 1f60_A           85 YQVTVIDAPGHR   96 (458)
T ss_dssp             EEEEEEECCCCT
T ss_pred             ceEEEEECCCcH
Confidence            368999999964

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.86  E-value=1.2e-06  Score=85.09  Aligned_cols=88  Identities=22%  Similarity=0.153  Sum_probs=57.6

Q ss_pred             HhcCCCCeEEEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecCCCcC
Q 022351           41 DRMPLVDIILEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSHNKDN  116 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~~~g  116 (298)
                      ..+..+|++|+|+|++..  .....+...+.  ..+.|+++|+||+|+.+...  .+...+.+...+.+++.+||+++.|
T Consensus       117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g  194 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG  194 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred             HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence            456679999999999753  22222222211  24689999999999975432  3344444555677899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 022351          117 VKEFLKFLQAHVRN  130 (298)
Q Consensus       117 i~~L~~~l~~~i~~  130 (298)
                      +++|++.+.+.+.+
T Consensus       195 i~eL~~~l~~~~~~  208 (535)
T 3dpu_A          195 VESIAKSLKSAVLH  208 (535)
T ss_dssp             CTTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.86  E-value=2.5e-07  Score=89.89  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH----cc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD----QQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~----~~  102 (298)
                      ||| ..+...+...+..+|++|+|+|+..+......+....+...+.|+++++||+|+.+..  .....+..+.    ..
T Consensus        60 PGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~  138 (537)
T 3izy_P           60 PGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDY  138 (537)
T ss_dssp             SSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCS
T ss_pred             CCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhc
Confidence            677 5555556667899999999999998776655544444334688999999999996432  1111111111    11


Q ss_pred             --CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          103 --NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       103 --~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                        ..+++++||+++.|+++|++.+...+.
T Consensus       139 ~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          139 GGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             SSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence              236889999999999999999987765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.85  E-value=2.3e-05  Score=73.72  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             HhcCCCCeEEEEEeCC-CCCCccc---HHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351           41 DRMPLVDIILEVRDAR-IPFSSEF---DQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        41 ~~l~~aDlVl~VvDa~-~p~~~~~---~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      +.+++++.+++|+|+. .++....   .++..+.. ...+|.++|+||+|+......+.+.+.+...+.+++.+||++++
T Consensus       231 ~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          231 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGA  310 (416)
T ss_dssp             HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence            4567899999999996 2221111   12222210 13689999999999987654555666665567789999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 022351          116 NVKEFLKFLQAHVRN  130 (298)
Q Consensus       116 gi~~L~~~l~~~i~~  130 (298)
                      |+++|++.|.+.+.+
T Consensus       311 gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          311 GLPALKEALHALVRS  325 (416)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.85  E-value=5.1e-07  Score=88.84  Aligned_cols=99  Identities=15%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CcccHHHhccCCCCCCc-EEEEEecCCCCC--hhhHH----H
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPF-------SSEFDQLRNHHPFSSSR-RILVLNKMDLAS--PTQFK----E   94 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-------~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~--~~~~~----~   94 (298)
                      ||| .++...+...+..+|++|+|+|+..+.       .....+...++...+.| +|+|+||+|+.+  .+...    .
T Consensus       263 PGh-~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~e  341 (592)
T 3mca_A          263 PGH-RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNI  341 (592)
T ss_dssp             ESS-SEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred             CCh-HHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHH
Confidence            666 345555556788899999999998643       33333222222224565 899999999975  33222    3


Q ss_pred             HHHHH-HccCC-----CEEEEecCCCcCHH--------------HHHHHHHHHH
Q 022351           95 WITFF-DQQNC-----PSFGVNSHNKDNVK--------------EFLKFLQAHV  128 (298)
Q Consensus        95 ~~~~~-~~~~~-----~vi~iSa~~~~gi~--------------~L~~~l~~~i  128 (298)
                      +.+++ ...++     +++++||++|.|+.              .|++.|...+
T Consensus       342 l~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          342 VSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             HHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             HHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            33344 33444     58999999999997              6777776543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.84  E-value=7.3e-06  Score=78.68  Aligned_cols=64  Identities=25%  Similarity=0.368  Sum_probs=34.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGI  210 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi  210 (298)
                      +.++|+++|.+|+|||||+|+|++.....     .-........+|+|.+...  +.+ .+..+.++||||.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~-----~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh   83 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTS-----AHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGH   83 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEE-TTEEEEECCCSSH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCccc-----ccccccccccCccEEecceEEEEE-CCEEEEEEECCCh
Confidence            35799999999999999999998421000     0011223455677776542  323 2346899999996

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.84  E-value=3.9e-05  Score=68.75  Aligned_cols=96  Identities=20%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             HHHHHHHhcCCCCeEEEEEeC-CCCCCccc-HHHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHH-HHccCCCEEEEe
Q 022351           35 ATRAIADRMPLVDIILEVRDA-RIPFSSEF-DQLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITF-FDQQNCPSFGVN  110 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa-~~p~~~~~-~~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~-~~~~~~~vi~iS  110 (298)
                      ....+..++..+|++++|+|+ ..+....+ ..+...+...++|+++|+||+|+.+... ..++++. +...+..+++++
T Consensus       157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~  236 (315)
T 1jwy_B          157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVI  236 (315)
T ss_dssp             HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECC
T ss_pred             HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEe
Confidence            445667789999999999997 44444333 2455555456899999999999986543 2222221 111113455555


Q ss_pred             c---CC---CcCHHHHHHHHHHHHHh
Q 022351          111 S---HN---KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       111 a---~~---~~gi~~L~~~l~~~i~~  130 (298)
                      +   .+   +.|+.++++.+.+.++.
T Consensus       237 ~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          237 NRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             CCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cCChhhhccCCCHHHHHHHHHHHHhC
Confidence            4   44   68899999998888765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.84  E-value=2.2e-06  Score=70.57  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             CCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh----hHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           44 PLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT----QFKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~----~~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ..+|++++|+|+...  .....+...+...+.|+++|+||+|+....    ..+.+.+   ..+.+++.+||+++.|+++
T Consensus        84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~~  158 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---ILGVKVVPLSAAKKMGIEE  158 (188)
T ss_dssp             HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---HHTSCEEECBGGGTBSHHH
T ss_pred             cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---HhCCCeEEEEecCCCCHHH
Confidence            358999999998641  111122222223578999999999985432    2233333   3367899999999999999


Q ss_pred             HHHHHHHHHHh
Q 022351          120 FLKFLQAHVRN  130 (298)
Q Consensus       120 L~~~l~~~i~~  130 (298)
                      +++.+.+.+.+
T Consensus       159 l~~~i~~~~~~  169 (188)
T 2wjg_A          159 LKKAISIAVKD  169 (188)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999877654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.81  E-value=3.8e-05  Score=76.93  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=65.2

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHH-HhccCCCCCCcEEEEEecCCCCChh--------hHHH----HH----HHH
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQ-LRNHHPFSSSRRILVLNKMDLASPT--------QFKE----WI----TFF   99 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l~~~l~~~~k~~IiVlNK~DL~~~~--------~~~~----~~----~~~   99 (298)
                      ..+..++..+|+||+|+|+..+.+..+.. +...+...++|+++|+||+|+....        ..+.    ..    ..+
T Consensus       192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l  271 (695)
T 2j69_A          192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL  271 (695)
T ss_dssp             HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH
Confidence            45567888999999999998876655443 3334444578999999999997542        1111    11    112


Q ss_pred             Hc---------cCCCEEEEecC--------------CCcCHHHHHHHHHHHHHh
Q 022351          100 DQ---------QNCPSFGVNSH--------------NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~---------~~~~vi~iSa~--------------~~~gi~~L~~~l~~~i~~  130 (298)
                      ..         ...+++++||+              ++.|+++|.+.+.+.+..
T Consensus       272 ~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          272 AEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             GGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence            11         12368999999              999999999988876643

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.81  E-value=1.1e-05  Score=72.73  Aligned_cols=88  Identities=11%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccH-HHhccCC-----CCCCcEEEEEecCCCCChhhH--------HHHHHHHHcc
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFD-QLRNHHP-----FSSSRRILVLNKMDLASPTQF--------KEWITFFDQQ  102 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~--------~~~~~~~~~~  102 (298)
                      ......+..+|++|+|+|+..+.+..+. .+..++.     ..+.|+++|+||+|+.+.+..        +...+..+..
T Consensus        72 ~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~  151 (307)
T 3r7w_A           72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF  151 (307)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence            3445667899999999999876433221 1111111     247999999999999874322        2222333344


Q ss_pred             C---CCEEEEecCCCcCHHHHHHHHH
Q 022351          103 N---CPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus       103 ~---~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      +   .+++.+||++ .++.+++..+.
T Consensus       152 g~~~~~~~~tSa~~-~~i~e~~~~iv  176 (307)
T 3r7w_A          152 GFPNLIGFPTSIWD-ESLYKAWSQIV  176 (307)
T ss_dssp             TCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred             CCCCeEEEEeeecC-ChHHHHHHHHH
Confidence            5   5789999999 66666555443

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.81  E-value=1.3e-05  Score=74.45  Aligned_cols=49  Identities=22%  Similarity=0.367  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~  212 (298)
                      +|+++|.+|+|||||+|+|+.                    .|.|.+.....+. .+..+.++||||...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~   72 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------------------KGTSSDITMYNNDKEGRNMVFVDAHSYPK   72 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------------------EEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------------------CCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence            899999999999999999971                    1234444333332 334689999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.80  E-value=1.9e-05  Score=72.63  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .....|+++|.||||||||+|.|..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999963

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.80  E-value=1.8e-05  Score=74.84  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|+|||||+|+|+.
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~   46 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLH   46 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHh
Confidence            3458999999999999999999984

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.78  E-value=6e-07  Score=86.46  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh--hhHHHHHHH---H-Hc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP--TQFKEWITF---F-DQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~--~~~~~~~~~---~-~~  101 (298)
                      .||| ..+...+...+..+|++++|+|+.++......+....+...+.|+++++||+|+.+.  +.+...+..   + +.
T Consensus        58 TPGh-e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~  136 (501)
T 1zo1_I           58 TPGH-AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEE  136 (501)
T ss_dssp             CCTT-TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTC
T ss_pred             CCCc-HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHH
Confidence            3677 445555556788999999999998865544433333322357899999999999642  111110000   0 01


Q ss_pred             c--CCCEEEEecCCCcCHHHHHHHHHH
Q 022351          102 Q--NCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       102 ~--~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      .  ..+++++||+++.|+++|++.+..
T Consensus       137 ~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          137 WGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             hCCCccEEEEeeeeccCcchhhhhhhh
Confidence            1  247899999999999999998753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.77  E-value=2e-05  Score=69.84  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++++++|.+|+|||||+|+|++.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.76  E-value=2.7e-05  Score=65.95  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ....++++|.+|||||||+|.|+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999984

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.76  E-value=6.6e-05  Score=62.45  Aligned_cols=89  Identities=25%  Similarity=0.138  Sum_probs=57.8

Q ss_pred             hcCCCCeEEEEEeCCCCCCccc-HH----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecCCC
Q 022351           42 RMPLVDIILEVRDARIPFSSEF-DQ----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSHNK  114 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~-~~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~~  114 (298)
                      ++..+|.+++|+|..++.+... ..    +.......+.|+++|.||+|+.....  .+.........+.+++.+||+++
T Consensus        77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g  156 (192)
T 2cjw_A           77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ  156 (192)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence            4556899999999876422111 11    22221224789999999999964321  12221222234567899999999


Q ss_pred             cCHHHHHHHHHHHHHh
Q 022351          115 DNVKEFLKFLQAHVRN  130 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~  130 (298)
                      .|++++++.+.+.+..
T Consensus       157 ~~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          157 HNVKELFEGIVRQVRL  172 (192)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999998876643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.76  E-value=1.8e-05  Score=74.20  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|+|||||+|+|++
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g   32 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTG   32 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhC
Confidence            4468999999999999999999984

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.75  E-value=3.3e-05  Score=72.26  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|+++|.+|+|||||+|+|++
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~   30 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5678999999999999999999984

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.75  E-value=1.3e-05  Score=78.22  Aligned_cols=59  Identities=20%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~   88 (298)
                      ||| ..+...+.+.+.-+|.+|.|+||..+....-..+.+.+...+.|+++++||+|...
T Consensus       108 PGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred             CCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence            888 56777788888899999999999988877766655554457899999999999854

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.75  E-value=2.8e-05  Score=72.90  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|+|||||+|+|.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g   30 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTG   30 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHS
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Confidence            4568999999999999999999984

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.74  E-value=1.4e-05  Score=80.45  Aligned_cols=90  Identities=16%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             HHHHHhc-CCCCeEEEEEeCCCCCCcccH-HHhccCCCCCCcEEEEEecCCCCChhhH-HHHHH--HHH-ccCC-CEEEE
Q 022351           37 RAIADRM-PLVDIILEVRDARIPFSSEFD-QLRNHHPFSSSRRILVLNKMDLASPTQF-KEWIT--FFD-QQNC-PSFGV  109 (298)
Q Consensus        37 ~~i~~~l-~~aDlVl~VvDa~~p~~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~~~-~~~~~--~~~-~~~~-~vi~i  109 (298)
                      +.+..++ ..+|+|++|+|++.++...+. .+...+...++|+++|+||+|+++.... .....  .+. ..++ +++++
T Consensus       178 ~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~i  257 (772)
T 3zvr_A          178 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR  257 (772)
T ss_dssp             HHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCC
T ss_pred             HHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEe
Confidence            3444554 689999999999987776665 4666555568999999999999865432 11111  000 1132 57889


Q ss_pred             ecCCCcCHHHHHHHHHH
Q 022351          110 NSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~  126 (298)
                      ||+++.|+++|.+.+.+
T Consensus       258 SA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          258 SQKDIDGKKDITAALAA  274 (772)
T ss_dssp             CCEESSSSEEHHHHHHH
T ss_pred             cccccccchhHHHHHHH
Confidence            99999999888888775

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.74  E-value=1.2e-05  Score=75.97  Aligned_cols=73  Identities=21%  Similarity=0.292  Sum_probs=37.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhh----------hcCCc--------cceeecCCCCeeeeeEEEEEc-cC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAA----------EKGKL--------RHATVSPQPGETKDIYSLKIA-SH  199 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~----------~~~~~--------~~~~~~~~pg~T~~~~~~~~~-~~  199 (298)
                      .+.++|+++|.+|+|||||+|+|+.. +.+...          +.|.+        ........+|+|.+.....+. ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            35689999999999999999999842 111100          00000        000011246777776543332 33


Q ss_pred             CCEEEEeCCCCCC
Q 022351          200 PNIYVLDTPGILP  212 (298)
Q Consensus       200 ~~~~liDTPGi~~  212 (298)
                      ..+.|+||||...
T Consensus        84 ~~~~iiDtpG~~~   96 (435)
T 1jny_A           84 YFFTIIDAPGHRD   96 (435)
T ss_dssp             CEEEECCCSSSTT
T ss_pred             eEEEEEECCCcHH
Confidence            4699999999754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.73  E-value=1.7e-05  Score=79.46  Aligned_cols=61  Identities=20%  Similarity=0.155  Sum_probs=44.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      -||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++|+||+|+...
T Consensus        84 TPG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           84 TPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CCSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             CcCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence            3677 445566677788899999999999876655444333332358999999999999753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.72  E-value=9.8e-06  Score=72.07  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=63.2

Q ss_pred             HHHHHHHhcCCCCeEE-EEEeCCCCCCcccH-HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHH-HHcc--CC-CEE
Q 022351           35 ATRAIADRMPLVDIIL-EVRDARIPFSSEFD-QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITF-FDQQ--NC-PSF  107 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl-~VvDa~~p~~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~-~~~~--~~-~vi  107 (298)
                      ....+..++..++.++ +|+|+..++...+. .+...+...+.|+++|+||+|+.+... ...+++. +...  ++ +++
T Consensus       151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~  230 (299)
T 2aka_B          151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV  230 (299)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred             HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEE
Confidence            4455667888888665 79999876655442 344444446799999999999986532 2222211 0011  22 567


Q ss_pred             EEecCCCcCHHHHHHHHHHHHH
Q 022351          108 GVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       108 ~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+||+++.|++++.+.+.+..+
T Consensus       231 ~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          231 NRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             CCCCBCTTSCBCHHHHHHHHHH
T ss_pred             CCChhhccccccHHHHHHHHHH
Confidence            8999999999999988876443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.71  E-value=8.6e-06  Score=79.01  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+|+++|.+|+|||||+|+|+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            4589999999999999999997

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.70  E-value=1.1e-05  Score=70.58  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=60.2

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-----CCCcEEEEEe-cCCCCChhhHHH------------HHH
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-----SSSRRILVLN-KMDLASPTQFKE------------WIT   97 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-----~~k~~IiVlN-K~DL~~~~~~~~------------~~~   97 (298)
                      .+.+...+..+|++|+|+|+.. +......+..++..     ...|.++|+| |+|+.+.. ...            +.+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence            4445567899999999999975 34333333222211     1568888888 99997542 222            222


Q ss_pred             HHHcc-C-CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           98 FFDQQ-N-CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        98 ~~~~~-~-~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+... . +..+++||+++.|++++++.|.+.+..
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            22111 0 222678999999999999999888765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.69  E-value=3.8e-06  Score=77.50  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=70.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC---------cccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS---------SEFD---QLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~---------~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|..|++.+....+..+...++.||+|+|......         ....   .+..++.   ..+.|++|++||+||...
T Consensus       196 ~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~  275 (353)
T 1cip_A          196 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE  275 (353)
T ss_dssp             EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhh
Confidence            368877777777777789999999999999876311         1111   1222222   146899999999998521


Q ss_pred             h-----------------hHHHHHHHHH-----------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           90 T-----------------QFKEWITFFD-----------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        90 ~-----------------~~~~~~~~~~-----------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .                 ..++..+++.           ..++.++.+||+++.|++++++++.+.+..
T Consensus       276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            1                 1222233322           134467889999999999999998876643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.69  E-value=0.00013  Score=60.99  Aligned_cols=87  Identities=15%  Similarity=0.042  Sum_probs=62.1

Q ss_pred             cCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhH----HHHHHHHHccC--CCEEEEecCCCcC
Q 022351           43 MPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQF----KEWITFFDQQN--CPSFGVNSHNKDN  116 (298)
Q Consensus        43 l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~~~~--~~vi~iSa~~~~g  116 (298)
                      ...+|.+++|+|+..+.......+..++...+.|.++|.||+|+.+..+.    ......+.+..  ...+++|++++.+
T Consensus       106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~  185 (210)
T 1pui_A          106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG  185 (210)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred             hhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence            46889999999998876544434444433357899999999999875422    23333333333  3578999999999


Q ss_pred             HHHHHHHHHHHHH
Q 022351          117 VKEFLKFLQAHVR  129 (298)
Q Consensus       117 i~~L~~~l~~~i~  129 (298)
                      ++++++.|.+.+.
T Consensus       186 ~~~l~~~l~~~~~  198 (210)
T 1pui_A          186 VDKLRQKLDTWFS  198 (210)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.67  E-value=7.1e-05  Score=75.05  Aligned_cols=60  Identities=20%  Similarity=0.103  Sum_probs=44.9

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~   88 (298)
                      -||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++++||+|+..
T Consensus        89 TPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           89 TPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence            3777 45667777888999999999999977654444433333345799999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.67  E-value=1.7e-05  Score=79.12  Aligned_cols=58  Identities=14%  Similarity=0.063  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      ||| ..+...+...+..+|.+++|+|+..........+...+...+.|+++|+||+|+.
T Consensus        82 pG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           82 PGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             CCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            777 4556677788889999999999987766555544444333579999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.66  E-value=3.6e-05  Score=74.68  Aligned_cols=72  Identities=19%  Similarity=0.263  Sum_probs=36.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh-cchhhh---hcCCccceeec------CCCCeeeeeEEEEEc-cCCCEEEEeCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI-GRITAA---EKGKLRHATVS------PQPGETKDIYSLKIA-SHPNIYVLDTPG  209 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~---~~~~~~~~~~~------~~pg~T~~~~~~~~~-~~~~~~liDTPG  209 (298)
                      ...+|+++|.+|+|||||+|+|+.. +.+...   ..+.....++.      ...|+|.......+. .+..+.|+||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            3469999999999999999999852 111100   00000001111      244555443332222 233689999999


Q ss_pred             CCC
Q 022351          210 ILP  212 (298)
Q Consensus       210 i~~  212 (298)
                      ...
T Consensus        92 ~~d   94 (529)
T 2h5e_A           92 HED   94 (529)
T ss_dssp             STT
T ss_pred             Chh
Confidence            855

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.63  E-value=3e-05  Score=77.60  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=37.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeecC------CCCeeeeeEEEEE-ccCCCEEEEeCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVSP------QPGETKDIYSLKI-ASHPNIYVLDTPGIL  211 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~~------~pg~T~~~~~~~~-~~~~~~~liDTPGi~  211 (298)
                      ....+|+++|.+|+|||||+|+|+.. +.+..... -....++.+      .+|+|.......+ ..+..+.|+||||..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~-v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE-THEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc-ccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            34579999999999999999999842 11110000 000011222      3566655443222 223468999999986


Q ss_pred             C
Q 022351          212 P  212 (298)
Q Consensus       212 ~  212 (298)
                      .
T Consensus        87 d   87 (693)
T 2xex_A           87 D   87 (693)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.63  E-value=3.7e-05  Score=69.14  Aligned_cols=24  Identities=42%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -.++|+++|.+|||||||+|.|++
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            457999999999999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.61  E-value=1.2e-05  Score=74.31  Aligned_cols=106  Identities=15%  Similarity=0.074  Sum_probs=64.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC---------CcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPF---------SSEFD---QLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~---------~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|..|+..+....+..+...++.||+|+|.....         .....   .+..++.   ..+.|+|+++||+||...
T Consensus       204 ~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~  283 (362)
T 1zcb_A          204 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE  283 (362)
T ss_dssp             EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhh
Confidence            36888877777777778899999999999998621         11111   1222222   146899999999998521


Q ss_pred             ------------------hhHHHHHHHH----H-------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           90 ------------------TQFKEWITFF----D-------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        90 ------------------~~~~~~~~~~----~-------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                                        ...++..+++    .       ..++.++.+||+++.|++++++.+.+.+..
T Consensus       284 ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          284 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence                              1123333322    1       123467889999999999999998876643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.60  E-value=2e-05  Score=78.93  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      ||| ..+...+...+..+|.+|+|+|+..+.......+...+...+.|+++|+||+|+...
T Consensus        83 PG~-~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           83 PGH-VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCC-SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             cCC-cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence            666 334445566777899999999998876655544433333358999999999999753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.59  E-value=1.2e-05  Score=79.89  Aligned_cols=59  Identities=14%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~   88 (298)
                      ||| ..+...+...+.-+|.+|.|+||..+...+...+.+.+...+.|+++++||+|...
T Consensus        75 PGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           75 PGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG  133 (638)
T ss_dssp             CCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred             CCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence            899 56888888999999999999999998877766665554446899999999999753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.58  E-value=0.0001  Score=62.29  Aligned_cols=81  Identities=10%  Similarity=0.089  Sum_probs=52.7

Q ss_pred             CCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHHc--cCCCEEEEecCCCcCHHHHH
Q 022351           46 VDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFDQ--QNCPSFGVNSHNKDNVKEFL  121 (298)
Q Consensus        46 aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L~  121 (298)
                      .+.+++|+|+..+..... ....   ..+.|.++|+||+|+.+..  ..+...+.++.  ...+++.+||+++.|+++++
T Consensus       130 ~~~~i~vvd~~~~~~~~~-~~~~---~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~  205 (221)
T 2wsm_A          130 ENYRVVMVSVTEGDDVVE-KHPE---IFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWI  205 (221)
T ss_dssp             CSEEEEEEEGGGCTTHHH-HCHH---HHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHH
T ss_pred             cCcEEEEEeCCCcchhhh-hhhh---hhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHH
Confidence            456677999876432111 1111   1357899999999996431  23333344432  24578999999999999999


Q ss_pred             HHHHHHHHh
Q 022351          122 KFLQAHVRN  130 (298)
Q Consensus       122 ~~l~~~i~~  130 (298)
                      ++|.+.+..
T Consensus       206 ~~l~~~~~~  214 (221)
T 2wsm_A          206 DFLRGILNV  214 (221)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999876543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.58  E-value=6.7e-05  Score=70.65  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-.++|+++|.+|||||||+|.|++
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g   53 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFL   53 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhC
Confidence            3457899999999999999999985

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.58  E-value=0.00014  Score=61.65  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+|+++|.+|||||||+|.|+.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999984

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.56  E-value=4.6e-05  Score=74.91  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..+|+++|.+|+|||||+|+|++
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~   27 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRG   27 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Confidence            346899999999999999999984

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.56  E-value=0.00014  Score=66.71  Aligned_cols=84  Identities=6%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHc-------cCCCEEEEe
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQ-------QNCPSFGVN  110 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~-------~~~~vi~iS  110 (298)
                      ..+.+|++++|+|+..+...  ..+...+  ...|.++|+||+|+.+......    +...+..       ...+++++|
T Consensus       184 l~~~~d~vl~V~d~~~~~~~--~~i~~~i--l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iS  259 (349)
T 2www_A          184 VADMVDMFVLLLPPAGGDEL--QGIKRGI--IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRIS  259 (349)
T ss_dssp             HHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECC
T ss_pred             HHhhCCEEEEEEcCCcchhH--HHhHHHH--HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEe
Confidence            35789999999998764321  1121111  2468899999999976433222    2222211       123678999


Q ss_pred             cCCCcCHHHHHHHHHHHHH
Q 022351          111 SHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i~  129 (298)
                      |+++.|+++|.++|.+.+.
T Consensus       260 A~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          260 ARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.55  E-value=9.4e-05  Score=67.64  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=54.4

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHH----cc-------CCCEEE
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFD----QQ-------NCPSFG  108 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~----~~-------~~~vi~  108 (298)
                      .+..+|++++|+|+..+..     +. .+.  ..+.|.++|+||+|+.+........+.++    ..       ..++++
T Consensus       166 ~~~~aD~vl~Vvd~~~~~~-----~~-~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~  239 (341)
T 2p67_A          166 VARMVDCFISLQIAGGGDD-----LQ-GIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT  239 (341)
T ss_dssp             HHTTCSEEEEEECC-----------C-CCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred             HHHhCCEEEEEEeCCccHH-----HH-HHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEE
Confidence            3589999999999864321     11 111  02468899999999987544433322221    11       236789


Q ss_pred             EecCCCcCHHHHHHHHHHHHHh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +||+++.|+++|++.|.+.+..
T Consensus       240 iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          240 CSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.50  E-value=0.00011  Score=63.32  Aligned_cols=96  Identities=18%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhc-cCC----CCCCcEEEEEecCCCCChhhHHH--------HHHHHH
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQLRN-HHP----FSSSRRILVLNKMDLASPTQFKE--------WITFFD  100 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~-~l~----~~~k~~IiVlNK~DL~~~~~~~~--------~~~~~~  100 (298)
                      +..+.+......+|++|+|+|+.. +...+..+.. +..    ...+|+++|+||+|+.....++.        ..+..+
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            444555566788999999999874 3333322222 111    12469999999999976544332        222233


Q ss_pred             ccCCCEEEEecCCC-----cCHHHHHHHHHHHHHh
Q 022351          101 QQNCPSFGVNSHNK-----DNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 ~~~~~vi~iSa~~~-----~gi~~L~~~l~~~i~~  130 (298)
                      ..+..++.+++..+     .++.+|++.+...+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            44556777777644     5788888888777654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.49  E-value=3e-05  Score=74.04  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|+|||||+|+|+.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            4567999999999999999999974

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.45  E-value=8.6e-05  Score=77.56  Aligned_cols=69  Identities=17%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCcc--------ceeecCCCCeeeeeEEEEEc-cCCCEEEEeCC
Q 022351          138 ASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLR--------HATVSPQPGETKDIYSLKIA-SHPNIYVLDTP  208 (298)
Q Consensus       138 ~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~--------~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTP  208 (298)
                      ...+.++|+++|.+|+|||||+|+|++...    ..+...        .......+|+|.+...+.+. ....+.|+|||
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~----~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP  367 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA----KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP  367 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHH----HHSCC---------------------CCSCEEEECSSCEEEEEECC
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc----cccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC
Confidence            345678999999999999999999985210    001000        01122356777765544333 34569999999


Q ss_pred             CC
Q 022351          209 GI  210 (298)
Q Consensus       209 Gi  210 (298)
                      |.
T Consensus       368 GH  369 (1289)
T 3avx_A          368 GH  369 (1289)
T ss_dssp             CH
T ss_pred             Ch
Confidence            96

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.41  E-value=0.00011  Score=73.43  Aligned_cols=71  Identities=18%  Similarity=0.193  Sum_probs=35.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeecC------CCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVSP------QPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~~------~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      ...+|+++|.+|+|||||+|+|+.. +....... -....++.+      ..|.|.......+ ..+..+.|+||||...
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~-v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE-VHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccce-ecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            3579999999999999999999842 11110000 000001111      3355544433222 1233689999999854

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.39  E-value=0.0002  Score=66.02  Aligned_cols=82  Identities=10%  Similarity=0.037  Sum_probs=46.1

Q ss_pred             CCeEEEEEeC-CCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHccCCCEEEEecCCCcCHHHH
Q 022351           46 VDIILEVRDA-RIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQQNCPSFGVNSHNKDNVKEF  120 (298)
Q Consensus        46 aDlVl~VvDa-~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~~~~~vi~iSa~~~~gi~~L  120 (298)
                      +++++++++. ..++...+..+...+. .+.|+|+|+||+|+.....+..    ..+.+...+++++.+||+++.+ ++.
T Consensus       146 v~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~  223 (361)
T 2qag_A          146 VHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DED  223 (361)
T ss_dssp             CCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------
T ss_pred             eEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chh
Confidence            4678888876 5555555444544443 5789999999999988765543    2233334577889999999887 555


Q ss_pred             HHHHHHHHH
Q 022351          121 LKFLQAHVR  129 (298)
Q Consensus       121 ~~~l~~~i~  129 (298)
                      +..+...+.
T Consensus       224 ~~~l~~~i~  232 (361)
T 2qag_A          224 FKEQTRLLK  232 (361)
T ss_dssp             CHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            544444443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.31  E-value=0.00021  Score=65.07  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~  213 (298)
                      +|+++|.+|||||||++.+..           +.........+.|..+....+...-.+.|+||||--..
T Consensus         1 KIvllGdsgvGKTSLl~~~~~-----------~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf   59 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFH-----------NMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY   59 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHS-----------CCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred             CEEEECCCCCCHHHHHHHHHc-----------CCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence            478999999999999998762           11000001111222222112222336999999997554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.30  E-value=9.8e-05  Score=65.92  Aligned_cols=99  Identities=8%  Similarity=-0.050  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-ccHHHh---ccCC----CCCCcEEEEEec-CCCCChhhHHHHHHHHH
Q 022351           30 PHMAAATRAIADRMPLVDIILEVRDARIPFSS-EFDQLR---NHHP----FSSSRRILVLNK-MDLASPTQFKEWITFFD  100 (298)
Q Consensus        30 ghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~-~~~~l~---~~l~----~~~k~~IiVlNK-~DL~~~~~~~~~~~~~~  100 (298)
                      |.+.+....++.+.+++|.||+|||+.+...- .-.++.   .++.    ..+.|++|..|| -|+...-...+..+.+.
T Consensus       195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~  274 (312)
T 3l2o_B          195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH  274 (312)
T ss_dssp             --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence            34344455667889999999999999765321 111121   2221    147899999997 47754333334444432


Q ss_pred             ----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 ----QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 ----~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                          ...+.+..+||.+|+|+.+-+++|.+.+
T Consensus       275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             CccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence                2344688999999999999999998765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.27  E-value=6.6e-05  Score=62.58  Aligned_cols=92  Identities=21%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCcccH-HHhc-c--CCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecC
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEFD-QLRN-H--HPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~~-~l~~-~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~  112 (298)
                      .......+|.+++|+|...+.+..+. .+.. +  ....+.|+++|+||+|+....  ............++.++.+||+
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal  150 (199)
T 2f9l_A           71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL  150 (199)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence            34556789999999998764332221 1111 1  012468999999999996432  1222233334456778889999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q 022351          113 NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.|++++++.|.+.+.+
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999877654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.25  E-value=0.00043  Score=62.54  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=58.7

Q ss_pred             CCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHHHHHHHHHHhhhhc-cCCCCCCceEEEEEcCCC
Q 022351           74 SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKS-DYDASSDTVTVMLLGIPN  152 (298)
Q Consensus        74 ~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~~~~-~~~~~~~~~~i~vvG~~n  152 (298)
                      .....||++|.|..+++.    ++..++.+.+++.++..+...+..|..++...+....-. ...-...+.-++++|.||
T Consensus        79 ~~~P~IIltrg~~~peel----ie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG  154 (314)
T 1ko7_A           79 PETPAIIVTRDLEPPEEL----IEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSG  154 (314)
T ss_dssp             TTCCCEEECTTCCCCHHH----HHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTT
T ss_pred             CCCCEEEEeCCCCCCHHH----HHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCC
Confidence            456677899999876543    333345588999888777777777777776543210000 000011356899999999


Q ss_pred             CchHHHHHHHhhh
Q 022351          153 VGKSALANSLHQI  165 (298)
Q Consensus       153 vGKSsliN~L~~~  165 (298)
                      +||||+.+.|.+.
T Consensus       155 ~GKSt~a~~l~~~  167 (314)
T 1ko7_A          155 IGKSETALELIKR  167 (314)
T ss_dssp             SSHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999863

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.23  E-value=6.4e-05  Score=68.47  Aligned_cols=105  Identities=16%  Similarity=0.073  Sum_probs=70.9

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCC-------CCCCccc------HHHhccCC---CCCCcEEEEEecCCCCC
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDAR-------IPFSSEF------DQLRNHHP---FSSSRRILVLNKMDLAS   88 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~-------~p~~~~~------~~l~~~l~---~~~k~~IiVlNK~DL~~   88 (298)
                      .-|..|++.+....+..+...++.+|+|+|..       +. ...+      ..+..++.   ..+.|+++++||+||..
T Consensus       170 ~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~-~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          170 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES-DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  248 (327)
T ss_dssp             EEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSC-TTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred             EEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccc-ccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhh
Confidence            36888888888888888999999999999765       11 1111      11222222   14689999999999853


Q ss_pred             hh------------------hHHHHHHHH----H------ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           89 PT------------------QFKEWITFF----D------QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        89 ~~------------------~~~~~~~~~----~------~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ..                  ..++..+++    .      ..++.++.+||+++.+++.++..+.+.+-.
T Consensus       249 ~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~  318 (327)
T 3ohm_A          249 EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             HHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence            21                  223333332    1      123456789999999999999998877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.21  E-value=0.00035  Score=69.99  Aligned_cols=24  Identities=8%  Similarity=0.069  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+|+++|.+|+|||||+++|+.
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.20  E-value=0.00013  Score=74.46  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+|+++|.+|+|||||+|+|+.
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~   41 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQ   41 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999985

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.20  E-value=0.00064  Score=65.39  Aligned_cols=24  Identities=21%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++..|+++|.+||||||++|.|.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999997

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.19  E-value=0.00013  Score=71.62  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+++++|.+|+|||||+|+|+.
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999985

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.18  E-value=0.00015  Score=71.27  Aligned_cols=70  Identities=20%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh-hcchhhhhcCCccce---eecCCCCeeeeeEEEEE--c--cC--CCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ-IGRITAAEKGKLRHA---TVSPQPGETKDIYSLKI--A--SH--PNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~-~~~~~~~~~~~~~~~---~~~~~pg~T~~~~~~~~--~--~~--~~~~liDTPGi~  211 (298)
                      ..+++++|.+|+|||||+++|+. ++.+...+- .....   ......|.|.....+.+  .  ++  ..+.|+||||..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~-~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccc-cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45899999999999999999985 222211000 00000   01123456655443222  1  11  247899999975


Q ss_pred             C
Q 022351          212 P  212 (298)
Q Consensus       212 ~  212 (298)
                      .
T Consensus        83 d   83 (599)
T 3cb4_D           83 D   83 (599)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.15  E-value=0.00019  Score=72.02  Aligned_cols=58  Identities=17%  Similarity=0.129  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      ||| ..+...+...+.-+|-+|.|+|+..+.......+.+.+...+.|+++++||+|..
T Consensus        93 PGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           93 PGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred             CCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence            788 4577777788888999999999999887776666554444689999999999975

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.14  E-value=7.6e-05  Score=68.30  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCC---------CCCcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARI---------PFSSEFD---QLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~---------p~~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|..|++.+....+..+...++.||+|+|...         .......   .+..++.   ..+.|+++++||+||...
T Consensus       164 ~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e  243 (340)
T 4fid_A          164 HLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE  243 (340)
T ss_dssp             EEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred             ccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence            478888888888888899999999999999862         1111111   1222211   147899999999998532


Q ss_pred             h-----------------hHHHHH----HHH------Hc-----------------cCCCEEEEecCCCcCHHHHHHHHH
Q 022351           90 T-----------------QFKEWI----TFF------DQ-----------------QNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus        90 ~-----------------~~~~~~----~~~------~~-----------------~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                      .                 ..++..    +.+      ..                 ..+.++.+||....+++.++..+.
T Consensus       244 ki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~  323 (340)
T 4fid_A          244 KLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV  323 (340)
T ss_dssp             HHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             hcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence            1                 122222    223      10                 124567899999999998888877


Q ss_pred             HHHH
Q 022351          126 AHVR  129 (298)
Q Consensus       126 ~~i~  129 (298)
                      +.+-
T Consensus       324 ~~Il  327 (340)
T 4fid_A          324 DVIM  327 (340)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.13  E-value=0.00016  Score=63.10  Aligned_cols=25  Identities=28%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCC---------CCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIP---------NVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~---------nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+         |||||||+|+|.+
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            456899999999         9999999999984

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.12  E-value=4.7e-05  Score=70.15  Aligned_cols=105  Identities=12%  Similarity=0.116  Sum_probs=67.3

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCC-------C--CCcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARI-------P--FSSEFD---QLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~-------p--~~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|..+++.+.......+...++.+|+|+|...       .  ..+...   .+..++.   ..+.|++||+||+||...
T Consensus       186 ~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~  265 (354)
T 2xtz_A          186 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  265 (354)
T ss_dssp             EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhh
Confidence            368888777777777788999999999999861       1  111111   1222221   146899999999998421


Q ss_pred             h-----------------------hHHHHHHHHHc----------------cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           90 T-----------------------QFKEWITFFDQ----------------QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        90 ~-----------------------~~~~~~~~~~~----------------~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .                       ..++..+++..                ..+.++.+||+++.|++++++.+.+.+.
T Consensus       266 k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~  344 (354)
T 2xtz_A          266 KVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR  344 (354)
T ss_dssp             HTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence            1                       12222222111                1224578999999999999998877654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.09  E-value=8.8e-05  Score=69.41  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=68.2

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCC---------CCcccH---HHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIP---------FSSEFD---QLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p---------~~~~~~---~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|..|++.+....+..+...++.||+|+|...-         ..+...   .+..++.   ..+.|++||+||+||...
T Consensus       220 ~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~  299 (402)
T 1azs_C          220 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  299 (402)
T ss_dssp             EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHH
T ss_pred             eecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhh
Confidence            3688888777777778899999999999998750         111111   1222221   246899999999998432


Q ss_pred             hh--------------------------------HHHHHHH----HHc---------cCCCEEEEecCCCcCHHHHHHHH
Q 022351           90 TQ--------------------------------FKEWITF----FDQ---------QNCPSFGVNSHNKDNVKEFLKFL  124 (298)
Q Consensus        90 ~~--------------------------------~~~~~~~----~~~---------~~~~vi~iSa~~~~gi~~L~~~l  124 (298)
                      ..                                .+....+    |.+         ..+.++.+||+++.+++.++..+
T Consensus       300 ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v  379 (402)
T 1azs_C          300 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC  379 (402)
T ss_dssp             HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHH
Confidence            11                                1111111    111         13346789999999999999988


Q ss_pred             HHHHH
Q 022351          125 QAHVR  129 (298)
Q Consensus       125 ~~~i~  129 (298)
                      .+.+.
T Consensus       380 ~~~I~  384 (402)
T 1azs_C          380 RDIIQ  384 (402)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.09  E-value=0.00011  Score=68.64  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=35.5

Q ss_pred             CCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHHHH
Q 022351           74 SSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFL  121 (298)
Q Consensus        74 ~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~  121 (298)
                      .+|+++|+||+|+...+.+..+.+.+...+.+++++||+.+.++.+|+
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~  261 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA  261 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence            499999999999985444455555554335689999999988887653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.08  E-value=2.6e-05  Score=65.82  Aligned_cols=74  Identities=11%  Similarity=0.031  Sum_probs=37.5

Q ss_pred             cCCCCeEEEEEeCC-CCCCcc--cHHHhccC------CCCCCcEEEEEecCCCCChhhHHHHHHHH--------HccCCC
Q 022351           43 MPLVDIILEVRDAR-IPFSSE--FDQLRNHH------PFSSSRRILVLNKMDLASPTQFKEWITFF--------DQQNCP  105 (298)
Q Consensus        43 l~~aDlVl~VvDa~-~p~~~~--~~~l~~~l------~~~~k~~IiVlNK~DL~~~~~~~~~~~~~--------~~~~~~  105 (298)
                      +..+|.+|+|+|+. .+....  ...+..++      ...+.|+++|+||+|+.+......+.+.+        ...+..
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            34489999999998 432221  12222221      12579999999999998654333222211        122335


Q ss_pred             EEEEecCCCcC
Q 022351          106 SFGVNSHNKDN  116 (298)
Q Consensus       106 vi~iSa~~~~g  116 (298)
                      ++.+||+++.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            67778877653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.07  E-value=0.00054  Score=57.95  Aligned_cols=57  Identities=18%  Similarity=0.332  Sum_probs=40.8

Q ss_pred             CCcEEEEEecCCCCChh--hHHHHHHHHH--ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           74 SSRRILVLNKMDLASPT--QFKEWITFFD--QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        74 ~k~~IiVlNK~DL~~~~--~~~~~~~~~~--~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ++|.++|+||+|+.+..  ..+...+.+.  ..+.+++.+||+++.|++++++.+.+.+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            35669999999986431  2333333333  235578999999999999999999876643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.03  E-value=0.00042  Score=63.61  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=64.3

Q ss_pred             eecccCCCccc-----hhhHHH-HHHHHHHhcCCCCeEEEEEeCCCCC-C-cccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           18 AVSQKKGGGWY-----GPHMAA-ATRAIADRMPLVDIILEVRDARIPF-S-SEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        18 ~~~~~~~~~wf-----pghm~~-~~~~i~~~l~~aDlVl~VvDa~~p~-~-~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      ...+.+|...+     +....+ ....+..++.++|+||+|+|+.... . .....+...+...++|+++|+||+|+.+.
T Consensus       139 ~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          139 TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred             EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence            34455665444     222222 3456667899999999999865322 1 22233444444467899999999999865


Q ss_pred             hh-HHHHHHHH-HccCCCEEEEecCCCcCHHHHHHHH
Q 022351           90 TQ-FKEWITFF-DQQNCPSFGVNSHNKDNVKEFLKFL  124 (298)
Q Consensus        90 ~~-~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~~~l  124 (298)
                      .. .....+.+ ...+..++.+++.++.++++.....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          219 GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             cccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            32 11111111 1234578899999988877654443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.97  E-value=0.00013  Score=66.46  Aligned_cols=100  Identities=10%  Similarity=-0.053  Sum_probs=60.8

Q ss_pred             CccchhhHHHHHH---HHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCC-----CCCCcEEEEEecCCCCChhhH----
Q 022351           25 GGWYGPHMAAATR---AIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP-----FSSSRRILVLNKMDLASPTQF----   92 (298)
Q Consensus        25 ~~wfpghm~~~~~---~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~-----~~~k~~IiVlNK~DL~~~~~~----   92 (298)
                      .-|..+++++...   ....++..++.+|+|+|+.+........+..++.     ..+.|++++.||+||.+++..    
T Consensus        49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~  128 (331)
T 3r7w_B           49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQ  128 (331)
T ss_dssp             EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHH
T ss_pred             EEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHH
Confidence            4677766666532   3457789999999999998762211122221111     257899999999999875321    


Q ss_pred             ---H-HHHHHHHc-----cCCCEEEEecCCCcCHHHHHHHHH
Q 022351           93 ---K-EWITFFDQ-----QNCPSFGVNSHNKDNVKEFLKFLQ  125 (298)
Q Consensus        93 ---~-~~~~~~~~-----~~~~vi~iSa~~~~gi~~L~~~l~  125 (298)
                         . +..+.+.+     .+..++.+||++ .++.+....+.
T Consensus       129 R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv  169 (331)
T 3r7w_B          129 RDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIV  169 (331)
T ss_dssp             HHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHH
Confidence               1 11122222     244678899987 46766555443

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.95  E-value=0.00078  Score=63.61  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..|+++|.+||||||+++.|..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.91  E-value=0.00096  Score=59.84  Aligned_cols=85  Identities=8%  Similarity=-0.015  Sum_probs=47.5

Q ss_pred             CCCCeEEEEEeCCC-CCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHH----HHHHHHHccCCCEEEEecCCCcCHH
Q 022351           44 PLVDIILEVRDARI-PFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFK----EWITFFDQQNCPSFGVNSHNKDNVK  118 (298)
Q Consensus        44 ~~aDlVl~VvDa~~-p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~----~~~~~~~~~~~~vi~iSa~~~~gi~  118 (298)
                      .+++++++++++.. .+......+...+. ...++++|+||.|+....++.    ...+..+..+++++.+||+++ +++
T Consensus       125 ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~  202 (301)
T 2qnr_A          125 NRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DED  202 (301)
T ss_dssp             CCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred             hhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-ccc
Confidence            34566777776532 24433333333322 357899999999998764432    333444556788899999999 999


Q ss_pred             HHHHHHHHHHHh
Q 022351          119 EFLKFLQAHVRN  130 (298)
Q Consensus       119 ~L~~~l~~~i~~  130 (298)
                      +++..+.+.+.+
T Consensus       203 e~f~~l~~~i~~  214 (301)
T 2qnr_A          203 EDFKEQTRLLKA  214 (301)
T ss_dssp             --CHHHHHHHHT
T ss_pred             HHHHHHHHHhhc
Confidence            988888776654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.89  E-value=0.00013  Score=66.94  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=57.5

Q ss_pred             HHHHHHhcC-CCCeEEEEEeCCCCCCcccH-HHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHH-H--ccCC-CEEE
Q 022351           36 TRAIADRMP-LVDIILEVRDARIPFSSEFD-QLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFF-D--QQNC-PSFG  108 (298)
Q Consensus        36 ~~~i~~~l~-~aDlVl~VvDa~~p~~~~~~-~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~-~--~~~~-~vi~  108 (298)
                      ...+..++. ..++|++|+|+..++...+. .+.+.+...+.|+++|+||+|+.+... ...+.+.. .  ..++ +++.
T Consensus       157 ~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~  236 (353)
T 2x2e_A          157 RDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVN  236 (353)
T ss_dssp             HHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCC
T ss_pred             HHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEe
Confidence            344555654 45677778888765554443 244444446799999999999986532 22222110 0  1122 4677


Q ss_pred             EecCCCcCHHHHHHHHHH
Q 022351          109 VNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~  126 (298)
                      +||+++.|++++.+.+..
T Consensus       237 ~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          237 RSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             CCHHHHHTTCCHHHHHHH
T ss_pred             CCcccccccccHHHHHHH
Confidence            999999999998888876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.88  E-value=0.00024  Score=61.72  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .....++++|.+||||||++|.|.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHH
Confidence            345788999999999999999997

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.84  E-value=0.00065  Score=57.27  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..++++|.+|+|||||+|.|++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            455789999999999999999985

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.83  E-value=0.0012  Score=65.72  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ....+++++|.+|+|||||+|+|++
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~   31 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLY   31 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHH
Confidence            3567899999999999999999984

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.79  E-value=0.0013  Score=63.92  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=45.7

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCC-CCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           37 RAIADRMPLVDIILEVRDARIP-FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p-~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      ..+...+..+|+||+|+|+..+ .......+...+...+.|+++|+||+|+.+.+.+......+
T Consensus       180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL  243 (550)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence            4455677889999999999864 34444455555555678999999999999877665555444

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.71  E-value=0.00075  Score=63.44  Aligned_cols=81  Identities=9%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             CCCeEEEEEeCC-CCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHH----HHHHHHccCCCEEEEecCCCcCHHH
Q 022351           45 LVDIILEVRDAR-IPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKE----WITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        45 ~aDlVl~VvDa~-~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ++++++++++++ ..+...+..+...+. .+.++|+|+||+|+.....+..    ..+.+...+++++.+|+.++.++++
T Consensus       138 ~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~  216 (418)
T 2qag_C          138 RVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENK  216 (418)
T ss_dssp             -CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC---------
T ss_pred             CeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHH
Confidence            355677777765 455555544444443 4789999999999987655443    3334445577888899999888887


Q ss_pred             HHHHHHH
Q 022351          120 FLKFLQA  126 (298)
Q Consensus       120 L~~~l~~  126 (298)
                      +...+..
T Consensus       217 ~~~~l~~  223 (418)
T 2qag_C          217 LVKKIKD  223 (418)
T ss_dssp             -------
T ss_pred             HHHHHHh
Confidence            6555543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.66  E-value=0.00043  Score=57.33  Aligned_cols=89  Identities=18%  Similarity=0.076  Sum_probs=57.7

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccc-HHHhc-c--CCCCCCcEEEEEecCCCCChh--hHHHHHHHHHccCCCEEEEecC
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEF-DQLRN-H--HPFSSSRRILVLNKMDLASPT--QFKEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~-~~l~~-~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~  112 (298)
                      +...+..++.+++|+|.....+..+ ..+.. +  ......|+++++||+|+....  ..........+.++.++.+|++
T Consensus        95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sal  174 (191)
T 1oix_A           95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSAL  174 (191)
T ss_dssp             CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            3455678899999999875422111 11111 1  012468899999999986421  1222233334456678889999


Q ss_pred             CCcCHHHHHHHHHHH
Q 022351          113 NKDNVKEFLKFLQAH  127 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~  127 (298)
                      ++.+++++++.|.+.
T Consensus       175 d~~~v~~l~~~l~~~  189 (191)
T 1oix_A          175 DSTNVEAAFQTILTE  189 (191)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999988754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.58  E-value=0.0022  Score=53.94  Aligned_cols=25  Identities=40%  Similarity=0.531  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++..++++|.+|+|||||++.|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999975

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.47  E-value=0.0038  Score=59.08  Aligned_cols=76  Identities=21%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhc-chhhh-hcCC----ccceeec-CCCCeeeeeEEE----EE--ccCC--CEEEE
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIG-RITAA-EKGK----LRHATVS-PQPGETKDIYSL----KI--ASHP--NIYVL  205 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~-~~~~~-~~~~----~~~~~~~-~~pg~T~~~~~~----~~--~~~~--~~~li  205 (298)
                      +-..|+|+|.+++|||+|+|.|++.- ..... ..|.    ...-.++ ....+|+.+...    .+  ..+.  .+.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll  145 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence            45678899999999999999887421 00000 0000    0111111 122356655421    11  1222  38899


Q ss_pred             eCCCCCCCCCC
Q 022351          206 DTPGILPPEIH  216 (298)
Q Consensus       206 DTPGi~~~~~~  216 (298)
                      ||.|+..+...
T Consensus       146 DTEG~~d~~~~  156 (457)
T 4ido_A          146 DTQGTFDSQST  156 (457)
T ss_dssp             EECCBTCTTCC
T ss_pred             eccCCCCcccC
Confidence            99999887664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.45  E-value=0.0057  Score=55.67  Aligned_cols=85  Identities=9%  Similarity=0.101  Sum_probs=51.6

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH----c-c------CCCEEEE
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD----Q-Q------NCPSFGV  109 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~----~-~------~~~vi~i  109 (298)
                      ..+.+|++++|+|+..+..  ...+...  ....+.++++||+|+.+.. ......+.+.    . .      ..+++++
T Consensus       165 v~~~~d~vl~v~d~~~~~~--~~~i~~~--i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~  240 (337)
T 2qm8_A          165 VADLTDFFLVLMLPGAGDE--LQGIKKG--IFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTI  240 (337)
T ss_dssp             HHTTSSEEEEEECSCC--------CCTT--HHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEE
T ss_pred             HHhhCCEEEEEEcCCCccc--HHHHHHH--HhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence            3478999999999753311  0001000  0134568888999986532 2111122221    0 1      3478999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||.++.|+++|.+.|.+....
T Consensus       241 Sal~g~gi~~L~~~I~~~~~~  261 (337)
T 2qm8_A          241 SGLHGKGLDSLWSRIEDHRSK  261 (337)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.003  Score=51.63  Aligned_cols=60  Identities=13%  Similarity=0.038  Sum_probs=36.3

Q ss_pred             HHhcCCCCeEEEEEeCC-CCCCccc--HHHhccC------CCCCCcEEEEEecCCCCChhhHHHHHHHH
Q 022351           40 ADRMPLVDIILEVRDAR-IPFSSEF--DQLRNHH------PFSSSRRILVLNKMDLASPTQFKEWITFF   99 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~-~p~~~~~--~~l~~~l------~~~~k~~IiVlNK~DL~~~~~~~~~~~~~   99 (298)
                      ...+..+|++++|+|+. .+.....  ..+..++      ...+.|+++|+||+|+.+........+.+
T Consensus       113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            34556799999999997 3211111  1122221      12479999999999998765444444333

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.23  E-value=0.0021  Score=53.77  Aligned_cols=24  Identities=38%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||+|.|.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999863

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.21  E-value=0.0028  Score=52.04  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||+|.|.+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999985

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.15  E-value=0.0069  Score=59.58  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++++|.+|+|||||+|+|.+.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            5999999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.11  E-value=0.0028  Score=52.82  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+++|.|||||+||++.|+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999984

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.11  E-value=0.0036  Score=60.83  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      -+|+++|...+|||||.-+|+
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL   52 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLL   52 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCCHHHHHHHHH
Confidence            489999999999999999997

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.11  E-value=0.0016  Score=64.41  Aligned_cols=69  Identities=23%  Similarity=0.227  Sum_probs=38.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh-hcchhhhhcCCccceeecC-CC-----CeeeeeEEEE-EccCCCEEEEeCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQ-IGRITAAEKGKLRHATVSP-QP-----GETKDIYSLK-IASHPNIYVLDTPGILPP  213 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~-~~~~~~~~~~~~~~~~~~~-~p-----g~T~~~~~~~-~~~~~~~~liDTPGi~~~  213 (298)
                      +|+++|...+|||||..+|+. +|.++..... ....++.+ .+     |.|....... .+.+..+.||||||-.+.
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSV-DKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCcccccc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence            689999999999999999873 3333221100 00111111 11     3343322111 123446899999998764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.08  E-value=0.019  Score=54.24  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++..|+++|.+||||||+++.|.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            46789999999999999999996

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=96.07  E-value=0.00095  Score=68.19  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=42.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      ||| .++...+...+..+|.+|+|+|+..+.......+...+...+.|+++++||+|+.
T Consensus       106 PG~-~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          106 PGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             CCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             cCc-hhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            666 4455566777889999999999998766555443222223578999999999986

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.06  E-value=0.0034  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +++++|.+|+|||||++.|.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.88  E-value=0.0052  Score=50.90  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3457899999999999999999853

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.87  E-value=0.005  Score=51.59  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||+|.|.+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4457899999999999999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.86  E-value=0.0053  Score=50.31  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..++++|.||+|||||++.|.+
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999975

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.83  E-value=0.013  Score=48.91  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..++++|.+|+|||||.+.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.77  E-value=0.005  Score=52.28  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3457899999999999999999864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.75  E-value=0.0059  Score=52.08  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4568899999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.62  E-value=0.0059  Score=50.97  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..++++|.||+|||||.+.|..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999974

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.60  E-value=0.021  Score=50.78  Aligned_cols=46  Identities=13%  Similarity=0.168  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++.+++.|.+.+....+   .....+..|+++|.+|+|||||.+.|.+
T Consensus         8 ~~~~~~~~l~~~i~~~~~---~~~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A            8 VLDYTIEFLDKYIPEWFE---TGNKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHT---TTCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            355566666655544211   1234678899999999999999998863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.52  E-value=0.0088  Score=50.20  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..++++|.+|+|||||++.|.+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHh
Confidence            456789999999999999999985

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.51  E-value=0.0086  Score=49.55  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++..++++|.+|+||||+++.|.+.
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999853

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.49  E-value=0.0087  Score=49.95  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++..++++|.+|+|||||++.|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35568999999999999999999763

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.44  E-value=0.0085  Score=48.71  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=19.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++-.++++|.+|+|||||++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            34578999999999999999643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.39  E-value=0.0092  Score=51.40  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            344789999999999999999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.31  E-value=0.01  Score=53.34  Aligned_cols=26  Identities=38%  Similarity=0.583  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++-.++++|.+|+|||||++.|.+.
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            34568999999999999999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=95.26  E-value=0.016  Score=58.07  Aligned_cols=22  Identities=9%  Similarity=0.114  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -+|+++|....|||||.-+|+.
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~   35 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLF   35 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4899999999999999999974

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.21  E-value=0.011  Score=49.10  Aligned_cols=24  Identities=25%  Similarity=0.545  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..++++|.+|+|||||.+.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.20  E-value=0.0093  Score=47.97  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|+++|.||+||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.20  E-value=0.011  Score=50.86  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345789999999999999999985

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.18  E-value=0.015  Score=47.01  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..++++|.+|+||||+.+.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.17  E-value=0.011  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            44789999999999999999985

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.15  E-value=0.013  Score=50.73  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4557899999999999999999853

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.14  E-value=0.014  Score=51.18  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++-.++++|.+|+|||||++.|.+.
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHh
Confidence            35668999999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.12  E-value=0.019  Score=46.68  Aligned_cols=42  Identities=24%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+.++.+...+....      ...+-.++++|.||+|||||++++.+
T Consensus        19 ~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             HHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4455555555554321      12345789999999999999999974

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.12  E-value=0.014  Score=48.55  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++..++++|.+|+||||+.+.|.+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999974

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.08  E-value=0.011  Score=48.49  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++++|.+|+|||||+|.|++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3689999999999999999984

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.07  E-value=0.013  Score=51.36  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3447899999999999999999853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.05  E-value=0.012  Score=48.11  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++++|.+|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999974

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.99  E-value=0.017  Score=46.54  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++-.++++|..|+|||||++.|.+.
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34557899999999999999999863

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.97  E-value=0.014  Score=50.06  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++..++++|.+|+|||||++.|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999998

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.97  E-value=0.014  Score=46.55  Aligned_cols=19  Identities=37%  Similarity=0.747  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchHHHHHHH
Q 022351          144 TVMLLGIPNVGKSALANSL  162 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L  162 (298)
                      .|+++|.||+||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.96  E-value=0.014  Score=50.68  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||++.|.+.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            447899999999999999999853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.95  E-value=0.015  Score=50.94  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3457899999999999999999853

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.93  E-value=0.01  Score=53.26  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcC
Confidence            4558999999999999999999853

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.93  E-value=0.015  Score=46.76  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|+++|.||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.92  E-value=0.014  Score=50.86  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999985

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.92  E-value=0.015  Score=51.03  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            3447899999999999999999853

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.91  E-value=0.017  Score=51.96  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..++++|.+|+|||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            5678999999999999999999975

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.90  E-value=0.017  Score=47.23  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..|+++|.||+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999963

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.88  E-value=0.027  Score=49.14  Aligned_cols=56  Identities=14%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             HHHHHHHh--cCCCCeEEEEEeCCCC-CCcccHHHhccCCC--C---CCcEEEEEecCCCCChh
Q 022351           35 ATRAIADR--MPLVDIILEVRDARIP-FSSEFDQLRNHHPF--S---SSRRILVLNKMDLASPT   90 (298)
Q Consensus        35 ~~~~i~~~--l~~aDlVl~VvDa~~p-~~~~~~~l~~~l~~--~---~k~~IiVlNK~DL~~~~   90 (298)
                      ..+.+..+  ...+|++|+|+|+... +...+..+...+..  .   .+|+++|+||+|+.+++
T Consensus       107 ~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          107 ALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            34444444  3479999999887542 22222233222211  1   26999999999998654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.88  E-value=0.015  Score=49.81  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44789999999999999999985

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.87  E-value=0.015  Score=50.33  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      -.++++|.+|+|||||++.|.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999853

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.86  E-value=0.014  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            44789999999999999999985

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.86  E-value=0.017  Score=50.76  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344789999999999999999985

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.86  E-value=0.015  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            44789999999999999999985

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.86  E-value=0.016  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3447899999999999999999853

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.84  E-value=0.012  Score=50.06  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=16.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh-hh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH-QI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~-~~  165 (298)
                      ++..++++|.+|+|||||++.|. +.
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34578999999999999999998 63

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.82  E-value=0.048  Score=48.26  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..++++|.||+||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999964

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.81  E-value=0.017  Score=50.50  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3447899999999999999999853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.80  E-value=0.016  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|+++|.||+||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.80  E-value=0.017  Score=50.13  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44789999999999999999985

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=94.79  E-value=0.016  Score=46.31  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .|+++|.||+||||+.+.|.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999963

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.75  E-value=0.018  Score=46.90  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+..|+++|.||+||||+.+.|.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999996

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.75  E-value=0.0093  Score=48.86  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++++|.+|+|||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.74  E-value=0.015  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999985

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.74  E-value=0.017  Score=49.80  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||++.|.+.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            447899999999999999999853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.73  E-value=0.016  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      -.++++|.+|+|||||++.|.+.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.71  E-value=0.017  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            44789999999999999999985

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.68  E-value=0.019  Score=50.37  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .+-.++++|.+|+|||||++.|.+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3447899999999999999999853

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.67  E-value=0.018  Score=46.77  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|++.|.||+||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999964

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.65  E-value=0.021  Score=53.62  Aligned_cols=64  Identities=9%  Similarity=0.032  Sum_probs=44.9

Q ss_pred             eEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHH----HHccCCCEEEEecC
Q 022351           48 IILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITF----FDQQNCPSFGVNSH  112 (298)
Q Consensus        48 lVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~----~~~~~~~vi~iSa~  112 (298)
                      +|++|+|+..++...+.++.+.+. .+.|+|+|+||+|.+++.++....+.    +...|.+++.+|..
T Consensus       151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            577888988888777777777765 68999999999999987766554444    33457788888753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.64  E-value=0.019  Score=48.28  Aligned_cols=24  Identities=29%  Similarity=0.663  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..|+++|.||+||||+.+.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.60  E-value=0.019  Score=50.82  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||++.|.+.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            447899999999999999999853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.57  E-value=0.021  Score=47.37  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..|+++|.||+||||+.+.|.+
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            345899999999999999999963

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.56  E-value=0.054  Score=51.79  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+-.++++|.+|+|||||++.|.+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHH
Confidence            4567899999999999999999975

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.54  E-value=0.02  Score=48.16  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...|+++|.+|+||||+.+.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999964

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.52  E-value=0.02  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44789999999999999999985

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.52  E-value=0.02  Score=47.09  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .|+++|.+|+||||+.+.|.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999974

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.52  E-value=0.019  Score=47.73  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++++|.+|+|||||++.|.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5799999999999999999853

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.49  E-value=0.024  Score=46.93  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..|++.|.||+||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.48  E-value=0.026  Score=48.43  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++..++++|.+|+|||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999976

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.47  E-value=0.035  Score=44.50  Aligned_cols=23  Identities=39%  Similarity=0.640  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+++.|.||+|||+|++++..
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999974

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.44  E-value=0.025  Score=47.05  Aligned_cols=25  Identities=36%  Similarity=0.591  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..|+++|.||+||||+.+.|.+
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4467899999999999999999975

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.44  E-value=0.022  Score=47.19  Aligned_cols=23  Identities=17%  Similarity=0.554  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...|+++|.+|+||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.42  E-value=0.022  Score=46.30  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .|++.|.||+||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999964

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.42  E-value=0.029  Score=45.76  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..|+++|.+|+||||+.+.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999999999963

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.41  E-value=0.025  Score=46.60  Aligned_cols=24  Identities=13%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+..|++.|.+|+||||+.+.|.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	4e-34
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-07
d1u0la2	225	c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C	1e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-04
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	9e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.001
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	0.003

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score =  123 bits (309), Expect = 4e-34
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 23/240 (9%)

Query: 31  HMAAATRAIADRMPLVDIILEVRDARIPFSS---EFDQLRNHHPFSSSRRILVLNKMDLA 87
           HMA A R + +++ L+DI+ E+ DARIP SS     + +  + P     RI++LNK D A
Sbjct: 1   HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKP-----RIMLLNKADKA 55

Query: 88  SPTQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK--SDYDASSDTVTV 145
                ++W   F+ Q   S  +NS N   + + +   +  ++               +  
Sbjct: 56  DAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRA 115

Query: 146 MLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVL 205
           +++GIPNVGKS L N L            K   A    +PG T     +K+     + +L
Sbjct: 116 LIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGITTSQQWVKV--GKELELL 162

Query: 206 DTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQI 265
           DTPGIL P+  D  V  +LA+TGAI DS +  +++A + L  L      +   ++ +++I
Sbjct: 163 DTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEI 222

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (115), Expect = 3e-07
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 14/155 (9%)

Query: 113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAE 172
              N++     +   ++ +  S        + V + G    GKS+  N+L  IG      
Sbjct: 34  RAGNIQLTNSAISDALKEIDSS-------VLNVAVTGETGSGKSSFINTLRGIGN----- 81

Query: 173 KGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGD 232
             +   A  +     T + +  K  + PN+   D PGI            K+        
Sbjct: 82  --EEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFF 139

Query: 233 SFVGGKELAQYFLGILNFSDEYKKWAKFSINQINK 267
             +      +  + I       KK   F   +++ 
Sbjct: 140 IIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 174

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 32/148 (21%)

Query: 78  ILVLNKMDLASPTQFKEW--ITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRKSD 135
           ++V+NKMDL      ++   +        P    ++     ++E  ++L+          
Sbjct: 45  VMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK-------- 96

Query: 136 YDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEK----GKLRHATVSPQPGETKDI 191
                      + G+  VGKS+L N+++   ++  +E      + RH T + Q  +    
Sbjct: 97  --------ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF- 147

Query: 192 YSLKIASHPNIYVLDTPGILPPEIHDVE 219
                      YV+DTPG    EI+D+E
Sbjct: 148 ---------GGYVVDTPGFANLEINDIE 166

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKL 176
           +  F    Q  +  L  +      +++T++++G   VGKS+  NS+  IG          
Sbjct: 7   INTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSI--IGE--------- 55

Query: 177 RHATVSPQPGETKD-IYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLA 225
           R  ++SP   E    +   +  +   + ++DTPG++     +    + + 
Sbjct: 56  RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIK 105

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIY 203
           T++  G  NVGKS L   L              +      +PG T+ I         N  
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKII---EIEWKNHK 46

Query: 204 VLDTPG 209
           ++D PG
Sbjct: 47  IIDMPG 52

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 35/141 (24%)

Query: 78  ILVLNKMDLASP----TQFKEWITFFDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRNLRK 133
           I+ + KMDL          + +   +       +  +S ++D++ + +   Q        
Sbjct: 45  IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDK------ 98

Query: 134 SDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAE----KGKLRHATVSPQPGETK 189
                     T +  G   VGKS+L N++     +   E     G+ +H T         
Sbjct: 99  ----------TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT--------- 139

Query: 190 DIYSLKIASHPNIYVLDTPGI 210
               +++       V DTPG 
Sbjct: 140 --RHVELIHTSGGLVADTPGF 158

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 11/132 (8%)

Query: 145 VMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYV 204
           V L+G PN GKS+L  ++ +     A         T+SP  G  +              +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPF----TTLSPNLGVVEVSE------EERFTL 53

Query: 205 LDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQ 264
            D PGI+     + +      L        +     A         +   +  A      
Sbjct: 54  ADIPGIIEGA-SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALL 112

Query: 265 INKPLTLHHKAD 276
               L   +K D
Sbjct: 113 RRPSLVALNKVD 124

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 11/49 (22%)

Query: 144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY 192
           TV+++G PNVGKS L N L  + +         + A V  + G T+D  
Sbjct: 2   TVLIVGRPNVGKSTLFNKL--VKK---------KKAIVEDEEGVTRDPV 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	100.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.94
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.31
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.3
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.29
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.23
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.13
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.07
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.07
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.06
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.06
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.05
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.05
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.01
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.98
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.98
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.95
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.89
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.85
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.83
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.8
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.74
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.72
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.72
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.67
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.66
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.61
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.57
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.54
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.5
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.5
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.5
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.49
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.47
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.46
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.44
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.43
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.41
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.41
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.4
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.38
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.38
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.38
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.37
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.36
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.36
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.36
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.33
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.33
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.33
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.33
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.32
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.32
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.31
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.28
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.27
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.27
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.25
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.24
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.23
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.23
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.23
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.23
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.22
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.22
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.21
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.18
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.18
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.18
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.16
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.15
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.14
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.13
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.08
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.05
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.03
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.02
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.01
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.01
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.93
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.92
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.92
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.9
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.89
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.88
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.86
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.82
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.81
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.8
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.75
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.72
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.72
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.62
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.62
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.61
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.56
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.54
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.42
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.39
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.33
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.29
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.27
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.23
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.19
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.13
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.12
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.11
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.04
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.03
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.02
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.91
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.6
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.59
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.57
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.5
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.5
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.5
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.42
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.31
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.3
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.3
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.24
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.05
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.02
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.01
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.9
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.9
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.89
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.89
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.83
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.75
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.71
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.62
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.61
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.53
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.46
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.41
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.38
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.35
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.34
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.3
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.22
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.2
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.2
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.12
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.11
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.09
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.06
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.05
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.04
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.03
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.95
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.93
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.91
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.9
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.86
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	94.85
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.77
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.75
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.71
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.71
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.67
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.57
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.57
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.53
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.53
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.52
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.52
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.44
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.42
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.39
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.38
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.38
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.36
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.35
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.34
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.21
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.11
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.05
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.02
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.98
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.8
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.68
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.52
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.4
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.16
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.09
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.02
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.84
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.76
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.49
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.45
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.36
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.33
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	91.87
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.61
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.49
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.14
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.94
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	90.81
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.61
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.46
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.39
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.14
d2qy9a2	211	GTPase domain of the signal recognition particle r	90.03
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	89.95
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.85
d1okkd2	207	GTPase domain of the signal recognition particle r	89.75
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.7
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.57
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.42
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.21
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	89.19
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.17
d1j8yf2	211	GTPase domain of the signal sequence recognition p	89.03
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.02
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	88.92
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	88.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	88.07
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	87.93
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	87.67
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	87.56
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	87.52
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	87.48
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.39
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.23
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.23
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.13
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	87.01
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	86.64
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	86.18
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	86.15
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.87
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.85
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	85.68
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	85.32
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.08
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	84.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	83.43
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	83.22
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.66
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	82.38
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	82.19
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	81.3
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	81.27
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.08
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	80.83
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	80.68
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.19

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.9e-41  Score=299.21  Aligned_cols=227  Identities=30%  Similarity=0.445  Sum_probs=181.3

Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEe
Q 022351           31 HMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVN  110 (298)
Q Consensus        31 hm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS  110 (298)
                      ||+++.+++++.++.+|+||+|+|||+|+++.++.+.++++  ++|+|+|+||+||++.+..+.|.++|+..+..++++|
T Consensus         1 Hm~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           1 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHHHHHHHHHHHhcCCccceee
Confidence            89999999999999999999999999999999999998864  7999999999999999999999999987788899999


Q ss_pred             cCCCcCHHHHHHHHHHHHHhhhhc--cCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCee
Q 022351          111 SHNKDNVKEFLKFLQAHVRNLRKS--DYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGET  188 (298)
Q Consensus       111 a~~~~gi~~L~~~l~~~i~~~~~~--~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T  188 (298)
                      +.++.+...+.+.+.+.+.+..+.  ........++++|+|+||||||||||+|+           +.+.+.|++.||+|
T Consensus        79 a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~-----------~~~~~~~~~~pG~T  147 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLA-----------KKNIAKTGDRPGIT  147 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHH-----------TSCCC---------
T ss_pred             cccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhh-----------ccceEEECCccccc
Confidence            999998887777666555442111  11234567999999999999999999999           36788999999999


Q ss_pred             eeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcc--cCCC
Q 022351          189 KDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSI--NQIN  266 (298)
Q Consensus       189 ~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~~~  266 (298)
                      ++.+.+..  +++++|+||||++.|...+.+.+.++|++++|++...+...+++|++++++..+.......+..  ...+
T Consensus       148 r~~~~i~~--~~~~~l~DTPGi~~p~~~~~~~~~~la~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~~~~~~~~~d  225 (273)
T d1puja_         148 TSQQWVKV--GKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPED  225 (273)
T ss_dssp             ---CCEEE--TTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSS
T ss_pred             ccceEEEC--CCCeEEecCCCccccCCccHHHHhhhhhcCCcchhhcchhhHHHHHHHHHHHhChHhhhHhcCCCCCCCC
Confidence            99988765  4569999999999999999999999999999999999999999999999988765554444433  3345


Q ss_pred             cccccc
Q 022351          267 KPLTLH  272 (298)
Q Consensus       267 ~~~~~~  272 (298)
                      ..++|+
T Consensus       226 ~~~~l~  231 (273)
T d1puja_         226 IAELFD  231 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            556655

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4e-30  Score=220.92  Aligned_cols=193  Identities=20%  Similarity=0.286  Sum_probs=141.7

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhHHHHHHHHH--ccCCCEEEEecCCC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQFKEWITFFD--QQNCPSFGVNSHNK  114 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~--~~~~~vi~iSa~~~  114 (298)
                      +..+.++|.++.|+.+..|.... ..+.+++   ...+.+++||+||+||.+++..+.+.+.+.  ..+++++.+|++++
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~-~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~   83 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG   83 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccc
Confidence            35688999999999888775432 2233332   136899999999999998776655554432  45689999999999


Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh-----hcchhhhhcCCccceeecCCCCeee
Q 022351          115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ-----IGRITAAEKGKLRHATVSPQPGETK  189 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~-----~~~~~~~~~~~~~~~~~~~~pg~T~  189 (298)
                      .|+++|.+.+.                +.+.+++|.||||||||||+|..     ++.++... ++++|        ||+
T Consensus        84 ~g~~~L~~~l~----------------~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~-~rGrH--------TTt  138 (225)
T d1u0la2          84 MGIEELKEYLK----------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKL-QRGRH--------TTT  138 (225)
T ss_dssp             TTHHHHHHHHS----------------SSEEEEECSTTSSHHHHHHHHSTTCCCC----------------------CCC
T ss_pred             hhHhhHHHHhc----------------CCeEEEECCCCCCHHHHHHhhcchhhhhccCccccc-CCCCc--------ccc
Confidence            99999888773                23789999999999999999973     33333221 23444        466


Q ss_pred             eeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccCCchhHHHhhcccCCCccc
Q 022351          190 DIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFSDEYKKWAKFSINQINKPL  269 (298)
Q Consensus       190 ~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  269 (298)
                      ..+.+.+..  +.+|||||||...++.+                 +++..++.||.++.....+|++|.|.++|+|+|++
T Consensus       139 ~~~l~~l~~--gg~iiDTPG~r~~~l~~-----------------~~~~~l~~~F~e~~~~~CkF~dC~H~~EpgCaVk~  199 (225)
T d1u0la2         139 TAQLLKFDF--GGYVVDTPGFANLEIND-----------------IEPEELKHYFKEFGDKQCFFSDCNHVDEPECGVKE  199 (225)
T ss_dssp             SCCEEECTT--SCEEESSCSSTTCCCCS-----------------SCHHHHGGGSTTSSSCCCSSTTCCSSSCSSCHHHH
T ss_pred             ceeEEEECC--CcEEEeCCccccccccc-----------------cCcchhhhhhhhHHhCCCCCCCCCCCCCCCCHHHH
Confidence            666666644  47999999999998876                 45778888888887777899999999999999999


Q ss_pred             ccccccCC
Q 022351          270 TLHHKADQ  277 (298)
Q Consensus       270 ~~~~~~~~  277 (298)
                      .++.....
T Consensus       200 av~~g~i~  207 (225)
T d1u0la2         200 AVENGEIA  207 (225)
T ss_dssp             HHHHTSSC
T ss_pred             HHHcCCCC
Confidence            99865443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=2.7e-29  Score=216.39  Aligned_cols=192  Identities=20%  Similarity=0.256  Sum_probs=137.2

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccC---CCCCCcEEEEEecCCCCChhhH----HHHHHHHHccCCCEEEEecC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHH---PFSSSRRILVLNKMDLASPTQF----KEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l---~~~~k~~IiVlNK~DL~~~~~~----~~~~~~~~~~~~~vi~iSa~  112 (298)
                      +..+.++|.++.|+.+..|.... ..+.+++   ...+.+.+||+||+||.+....    +.+.+.|...|++++.+|+.
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~-~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFST-ALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCH-HHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CCCccccCEEEEEEECCCCCCCH-HHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            45688999999999998774332 2233332   2468999999999999876543    34556666779999999999


Q ss_pred             CCcCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh-----hcchhhhhcCCccceeecCCCCe
Q 022351          113 NKDNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ-----IGRITAAEKGKLRHATVSPQPGE  187 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~-----~~~~~~~~~~~~~~~~~~~~pg~  187 (298)
                      ++.|+++|.+.+.                +.+.+++|.||||||||||+|++     ++.++... ++++|+        
T Consensus        84 ~~~gl~~L~~~l~----------------~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~-~rGrHT--------  138 (231)
T d1t9ha2          84 DQDSLADIIPHFQ----------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL-GRGKHT--------  138 (231)
T ss_dssp             HHTTCTTTGGGGT----------------TSEEEEEESHHHHHHHHHHHHCC----------------------------
T ss_pred             ChhHHHHHHHhhc----------------cceEEEECCCCccHHHHHHhhccHhHhhhccccccc-CCCcee--------
Confidence            9999998877663                12568999999999999999973     44444332 244555        


Q ss_pred             eeeeEEEEEccCCCEEEEeCCCCCCCCCCChhhhhhhhhhcccccCCCChHHHHHHHHHHHccC--CchhHHHhhcccCC
Q 022351          188 TKDIYSLKIASHPNIYVLDTPGILPPEIHDVEVCSKLALTGAIGDSFVGGKELAQYFLGILNFS--DEYKKWAKFSINQI  265 (298)
Q Consensus       188 T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~la~~~~i~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~  265 (298)
                      |+..+.+...   +.+|||||||...++.+                 +++..++.+|.++....  .+|++|.|.++|+|
T Consensus       139 Tt~~~l~~~~---gg~iiDTPG~r~~~l~~-----------------~~~~~l~~~F~ei~~~~~~CkF~dC~H~~EpgC  198 (231)
T d1t9ha2         139 TRHVELIHTS---GGLVADTPGFSSLEFTD-----------------IEEEELGYTFPDIREKSSSCKFRGCLHLKEPKC  198 (231)
T ss_dssp             CCCCCEEEET---TEEEESSCSCSSCCCTT-----------------CCHHHHGGGSHHHHHHGGGCSSTTCCSSSCSSC
T ss_pred             eeeEEEEecC---CCEEEECCccccccccc-----------------cCcccchhhhhhHHHHhCCCCCCCCCCCCCCCc
Confidence            4444444442   47999999999998875                 45777888888876654  57999999999999


Q ss_pred             CcccccccccCC
Q 022351          266 NKPLTLHHKADQ  277 (298)
Q Consensus       266 ~~~~~~~~~~~~  277 (298)
                      +|++.++.....
T Consensus       199 aV~~av~~g~i~  210 (231)
T d1t9ha2         199 AVKQAVEDGELK  210 (231)
T ss_dssp             HHHHHHHHTSSC
T ss_pred             hHHHHHHcCCCC
Confidence            999999865544

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=9.8e-13  Score=107.59  Aligned_cols=59  Identities=29%  Similarity=0.387  Sum_probs=47.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~  217 (298)
                      +|+++|.||||||||+|+|++            +...+++.||+|+++..+..   .++.++||||+.......
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~------------~~~~~~~~~g~T~~~~~~~~---~~~~ivDtpG~~~~~~~~   60 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRKIIEIEW---KNHKIIDMPGFGFMMGLP   60 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS------------CCCSSSSSTTCTTSCEEEEE---TTEEEEECCCBSCCTTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------CCceeeCCCCEeeccccccc---ccceecccCCceeccccc
Confidence            689999999999999999982            33468899999999877644   358999999987654443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.30  E-value=2e-12  Score=112.49  Aligned_cols=69  Identities=23%  Similarity=0.346  Sum_probs=55.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCCCh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~~~  218 (298)
                      ...++|+++|.||||||||+|+|++           .+...+++.+++|++...+.. ..+.++.++||||+..+...+.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg-----------~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~   98 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG-----------ERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND   98 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC-----------CCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHH
Confidence            4678999999999999999999993           566788889999998875432 3445699999999988766554


Q ss_pred             h
Q 022351          219 E  219 (298)
Q Consensus       219 ~  219 (298)
                      +
T Consensus        99 ~   99 (257)
T d1h65a_          99 M   99 (257)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.1e-12  Score=118.17  Aligned_cols=89  Identities=21%  Similarity=0.263  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI  196 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~  196 (298)
                      +.+....+.+.+.+..       ..+++|+++|.||||||||||+|++.+.       .......++.++||++...+..
T Consensus        38 ~~~~~~~i~~~l~~~~-------~~~l~Iai~G~~n~GKSSLiNaL~G~~~-------~~~~~~~~g~~~tT~~~~~~~~  103 (400)
T d1tq4a_          38 IQLTNSAISDALKEID-------SSVLNVAVTGETGSGKSSFINTLRGIGN-------EEEGAAKTGVVEVTMERHPYKH  103 (400)
T ss_dssp             HHHHHHHHHHHHHHHH-------HCCEEEEEEECTTSSHHHHHHHHHTCCT-------TSTTSCCCCC----CCCEEEEC
T ss_pred             HHHHHHHHHHHHHhcc-------cCCcEEEEECCCCCCHHHHHHHHhCCCc-------CCCccCCCCCCCCceeeeeeec
Confidence            4555555555554432       3578999999999999999999995321       1122334456678998888877


Q ss_pred             ccCCCEEEEeCCCCCCCCCCChh
Q 022351          197 ASHPNIYVLDTPGILPPEIHDVE  219 (298)
Q Consensus       197 ~~~~~~~liDTPGi~~~~~~~~~  219 (298)
                      ...+++.|+||||+..+.....+
T Consensus       104 ~~~~~~~l~DtPG~~~~~~~~~~  126 (400)
T d1tq4a_         104 PNIPNVVFWDLPGIGSTNFPPDT  126 (400)
T ss_dssp             SSCTTEEEEECCCGGGSSCCHHH
T ss_pred             cCCCeEEEEeCCCcccccccHHH
Confidence            77778999999999887765443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.23  E-value=1.6e-11  Score=100.68  Aligned_cols=104  Identities=19%  Similarity=0.157  Sum_probs=79.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH---c-
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD---Q-  101 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---~-  101 (298)
                      .+.||| ..+.+.+...+..+|++++|+|++.+......++...+...++|+++|+||+|+.+.+..+...+.++   . 
T Consensus        64 ~d~~g~-~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~  142 (179)
T d1wb1a4          64 VDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQS  142 (179)
T ss_dssp             CCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-cccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHH
Confidence            344666 67888889999999999999999988766555555544446899999999999998765433222221   1 


Q ss_pred             ----cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 ----QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ----~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                          ...+++++||++|+|+++|++.|.+.+++
T Consensus       143 ~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         143 THNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence                13479999999999999999999988876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=5.3e-11  Score=96.26  Aligned_cols=95  Identities=16%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCc
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKD  115 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~  115 (298)
                      .......+..+|++++++|++.+....+..+..++...++|+++|+||+|+......+...+.++....+++++||+++.
T Consensus        71 ~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~  150 (171)
T d1mkya1          71 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNI  150 (171)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTB
T ss_pred             ccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCC
Confidence            44556778999999999999988777766666555456899999999999975443332223332223378999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 022351          116 NVKEFLKFLQAHVRN  130 (298)
Q Consensus       116 gi~~L~~~l~~~i~~  130 (298)
                      |+++|+++|.+.+++
T Consensus       151 gid~L~~~i~~~l~e  165 (171)
T d1mkya1         151 NLDTMLETIIKKLEE  165 (171)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999998876

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=1.4e-10  Score=95.80  Aligned_cols=96  Identities=10%  Similarity=0.081  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-----ccCCCEE
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-----QQNCPSF  107 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi  107 (298)
                      .............+|+|++|+|++.++...+..+.+++...++|+++|+||+|+.++...++..+.++     ....+++
T Consensus        93 ~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  172 (195)
T d1svia_          93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             hhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEE
Confidence            34455666778899999999999988877766666665557899999999999988766555444432     1334789


Q ss_pred             EEecCCCcCHHHHHHHHHHHH
Q 022351          108 GVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       108 ~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ++||+++.|+++|+++|.+.+
T Consensus       173 ~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         173 LFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.07  E-value=1.5e-11  Score=100.76  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=42.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~~~~~liDTPGi~~  212 (298)
                      .|+++|.||||||||+|+|++           . ...+++.+++|++...  .....+..+.++||||+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~-----------~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS-----------A-KPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE   61 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE-----------E-CCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhC-----------C-CCceecCCCceEeeeeceeEecCCcEEEEecCCCccc
Confidence            589999999999999999983           2 2356677777766442  3334455689999999843

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.2e-10  Score=92.84  Aligned_cols=63  Identities=30%  Similarity=0.431  Sum_probs=49.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEI  215 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~  215 (298)
                      +++|+++|.||||||||+|+|++           .+...++..||+|+......+ ..+.++.++||||+.....
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~   64 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG-----------REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD   64 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT-----------SCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC-----------CCceEeecccccccceEeeeeeccCceeeeccccccccccc
Confidence            57899999999999999999993           455667888999988664333 2233688999999987543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=2.2e-11  Score=97.11  Aligned_cols=61  Identities=34%  Similarity=0.514  Sum_probs=47.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~  214 (298)
                      ++|+++|.||||||||+|+|++           .+...++..||+|+......+ ..+..+.++||||+....
T Consensus         1 ikI~liG~~n~GKSSLin~l~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~   62 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLN-----------EDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET   62 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHH-----------HTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCceeeeccccccccceeEEEEeCCeeEEeccccccccCC
Confidence            4799999999999999999984           456778899999987764332 233468889999986643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=1.2e-10  Score=94.76  Aligned_cols=64  Identities=34%  Similarity=0.480  Sum_probs=50.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILPPEIHD  217 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~~~~~~  217 (298)
                      ..|+++|.||||||||+|+|++           .+...++..|++|+....... ..+..+.++||||+.......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~-----------~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~   70 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG-----------VKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL   70 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT-----------SCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhC-----------CCceeecccCCcccccccceeeeeeeeeeeccccccccccccc
Confidence            4799999999999999999993           456678899999988775432 333468999999997755443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=4.5e-11  Score=106.63  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-EEE--Ecc---------------------
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-SLK--IAS---------------------  198 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~~~--~~~---------------------  198 (298)
                      ++|++||.||||||||+|+|.+            ..+.++++|+||.++. ++.  +.+                     
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~------------~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL------------VDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGL   68 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTE
T ss_pred             CcEeEECCCCCCHHHHHHHHHC------------CCCchhcCCCCcccCccceeeCCCCchhhhhhhccCcccccccccc
Confidence            3799999999999999999983            3568899999998754 211  110                     


Q ss_pred             -CCCEEEEeCCCCCCC
Q 022351          199 -HPNIYVLDTPGILPP  213 (298)
Q Consensus       199 -~~~~~liDTPGi~~~  213 (298)
                       ...+.++|+||+...
T Consensus        69 ~~~~i~~~D~pGli~g   84 (319)
T d1wxqa1          69 ALIPVKMVDVAGLVPG   84 (319)
T ss_dssp             EEEEEEEEECC-----
T ss_pred             ccccEEEEECCCcccc
Confidence             013889999999764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.01  E-value=3.6e-10  Score=94.38  Aligned_cols=103  Identities=18%  Similarity=0.163  Sum_probs=73.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CcccHHHhccCCCCC-CcEEEEEecCCCCChhhHHHH----HHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPF-SSEFDQLRNHHPFSS-SRRILVLNKMDLASPTQFKEW----ITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~~~~~~~----~~~~   99 (298)
                      -.-||| ..+.+.+...+..+|++|+|+|+..+. .....+...++...+ +|+|+++||+|+.+.......    .+++
T Consensus        91 iD~PGH-~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l  169 (205)
T d2qn6a3          91 IDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT  169 (205)
T ss_dssp             EECSCH-HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             eccchH-HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHHh
Confidence            344899 678888999999999999999999876 323222222221233 578888999999876543322    2222


Q ss_pred             Hcc---CCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQQ---NCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~---~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ...   ..+++++||++|.|+++|++.|.++++
T Consensus       170 ~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         170 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            221   347899999999999999999987764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=3.3e-10  Score=92.12  Aligned_cols=96  Identities=18%  Similarity=0.157  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCC--CCCCcEEEEEecCCCCChhhHHHHHHHHHc-cC-CCEEE
Q 022351           33 AAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHP--FSSSRRILVLNKMDLASPTQFKEWITFFDQ-QN-CPSFG  108 (298)
Q Consensus        33 ~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~-~~-~~vi~  108 (298)
                      ....+.+...+.+||+||+|+|++.+....+..+..+++  ..++|+++|+||+|+.....  .+.+.+.+ .+ ..+++
T Consensus        72 ~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~  149 (178)
T d1wf3a1          72 EFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELLPEAEPRM  149 (178)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHTSTTSEEEE
T ss_pred             hhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhhcccCceEE
Confidence            334566778899999999999999987766655554432  24689999999999976432  33333332 22 36889


Q ss_pred             EecCCCcCHHHHHHHHHHHHHh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +||+++.|+++|++.|.+.+++
T Consensus       150 iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         150 LSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EecCCCCCHHHHHHHHHHhCCC
Confidence            9999999999999999876543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=1.9e-10  Score=93.61  Aligned_cols=58  Identities=29%  Similarity=0.516  Sum_probs=41.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE-E-EEEccCCCEEEEeCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY-S-LKIASHPNIYVLDTPGILPP  213 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~-~-~~~~~~~~~~liDTPGi~~~  213 (298)
                      .|+++|.||||||||+|+|++            ....++..+++|.... . .....+..+.++||||+...
T Consensus         3 ~VaivG~~nvGKSTLin~L~~------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~   62 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR------------AHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG   62 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS------------SCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------CCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecC
Confidence            489999999999999999983            2234555555555443 2 23334456899999998763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=4.1e-10  Score=91.90  Aligned_cols=62  Identities=35%  Similarity=0.536  Sum_probs=43.0

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEE-EccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLK-IASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~  212 (298)
                      ...++|+++|.+|||||||+|+|++           .+...++..+++|+...... ...+..+.++||||+..
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~-----------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~   68 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN-----------KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR   68 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT-----------STTEEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC-----------CCcceeecccccccccceeeeccCCceeeeeccCCccc
Confidence            4579999999999999999999993           55677889999988776322 22344688999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=2.3e-10  Score=101.13  Aligned_cols=64  Identities=20%  Similarity=0.327  Sum_probs=49.3

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE--EEEccC----------------CC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS--LKIASH----------------PN  201 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~--~~~~~~----------------~~  201 (298)
                      +..++|++||.||||||||+|+|++           ...+.++++|+||.++..  +.+.+.                ..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~-----------~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~   76 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK-----------SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF   76 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH-----------STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC-----------CCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceeccc
Confidence            4668999999999999999999993           334577899999988652  333221                14


Q ss_pred             EEEEeCCCCCCCC
Q 022351          202 IYVLDTPGILPPE  214 (298)
Q Consensus       202 ~~liDTPGi~~~~  214 (298)
                      +.++|.||+....
T Consensus        77 i~~~DvaGLv~gA   89 (296)
T d1ni3a1          77 LTVFDIAGLTKGA   89 (296)
T ss_dssp             EEEECTGGGCCCC
T ss_pred             ceeeecccccccc
Confidence            7899999998744

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=5.9e-10  Score=90.68  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccC-----CCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEec
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHH-----PFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNS  111 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l-----~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa  111 (298)
                      .++...+..+|++++++|+..........+..++     ...++|+++|+||+|+...+..+...+.+...+.+++++||
T Consensus        71 ~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA  150 (180)
T d1udxa2          71 LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSA  150 (180)
T ss_dssp             HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred             HHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4566778999999999998653222211111111     01368999999999999988888777888777889999999


Q ss_pred             CCCcCHHHHHHHHHHHHHh
Q 022351          112 HNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       112 ~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++.|+++|++.|.+.++.
T Consensus       151 ~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         151 LTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             TTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999988875

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.89  E-value=5.1e-10  Score=97.96  Aligned_cols=59  Identities=24%  Similarity=0.361  Sum_probs=41.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC----------------CCEE
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH----------------PNIY  203 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~----------------~~~~  203 (298)
                      .++|++||.||||||||+|+|.+            ..+.++++|+||.++.  .+.+.+.                -.+.
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~------------~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~   69 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK------------AGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTME   69 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH------------TC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHC------------CCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEE
Confidence            36899999999999999999983            2467889999998866  3433221                1377


Q ss_pred             EEeCCCCCC
Q 022351          204 VLDTPGILP  212 (298)
Q Consensus       204 liDTPGi~~  212 (298)
                      ++|.||+..
T Consensus        70 ~~Di~GLi~   78 (278)
T d1jala1          70 FVDIAGLVA   78 (278)
T ss_dssp             EEECCSCCT
T ss_pred             EEEccccCC
Confidence            999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=1.1e-09  Score=88.34  Aligned_cols=60  Identities=33%  Similarity=0.469  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGILPPE  214 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi~~~~  214 (298)
                      +|+++|.||||||||+|+|++           .+...++..||+|+......+. ....+.+.||||+....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~-----------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~   62 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK-----------KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP   62 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTSSG
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CCcceecccCceeeccccccccccccccccccccceeeee
Confidence            689999999999999999983           4556678889999876644332 23357899999997643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.83  E-value=2.5e-09  Score=88.31  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=70.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-cHHHhccCCC-CCCcEEEEEecCCCCChhhHHH----HHHHHHc
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE-FDQLRNHHPF-SSSRRILVLNKMDLASPTQFKE----WITFFDQ  101 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~-~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~~~~----~~~~~~~  101 (298)
                      -||| ..+...+...+..+|++++|+|+..+.... ..+....+.. ..+++++++||+|+.+......    ..+.+..
T Consensus        85 tPGh-~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~  163 (195)
T d1kk1a3          85 APGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG  163 (195)
T ss_dssp             CSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             cchh-hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhcc
Confidence            3888 678888889999999999999999875332 2222222112 3355788999999988653322    2233322


Q ss_pred             c---CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          102 Q---NCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       102 ~---~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .   ..+++++||++|+|+++|++.|.+++
T Consensus       164 ~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         164 TVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            2   24789999999999999999998764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.81  E-value=6.5e-10  Score=94.37  Aligned_cols=103  Identities=14%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh---------------
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ---------------   91 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~---------------   91 (298)
                      .-||| ..+...+...+..+|++|+|+||..+.......+..++...++|+|+++||+|+.+.+.               
T Consensus        76 DtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~  154 (227)
T d1g7sa4          76 DTPGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (227)
T ss_dssp             CCCTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             cccce-ecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcch
Confidence            44777 44555555678899999999999998888777766665557899999999999874321               


Q ss_pred             --H-HH-------HHHHHHcc---------------CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           92 --F-KE-------WITFFDQQ---------------NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        92 --~-~~-------~~~~~~~~---------------~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                        . ..       ....+...               ..+++++||.+|.|+++|++.|....++
T Consensus       155 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence              0 00       00111011               1258999999999999999999887755

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=4.3e-09  Score=86.49  Aligned_cols=64  Identities=30%  Similarity=0.415  Sum_probs=40.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCCCCCh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPEIHDV  218 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~~~~~  218 (298)
                      .+|+++|.||||||||||+|++          ....+.++..|++|.+.....+.  ....++|+||+..+.....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g----------~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~d~~~~~~~~~~~~   87 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN----------RKNLARTSSKPGKTQTLNFYIIN--DELHFVDVPGYGFAKVSKS   87 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT----------C-------------CCEEEEEET--TTEEEEECCCBCCCSSCHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcC----------CCceEEeecccceeeeccccccc--ccceEEEEEeecccccccc
Confidence            4899999999999999999983          34456788889999887765543  3588999999988766543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=1.2e-08  Score=80.82  Aligned_cols=87  Identities=16%  Similarity=0.223  Sum_probs=67.5

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcC
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDN  116 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g  116 (298)
                      +.....+..+|+|++|+|++.+....+..+...+  ...++++++||+|+.+....+...+.+ ....+++++||+++.|
T Consensus        72 ~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~g  148 (160)
T d1xzpa2          72 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEG  148 (160)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhhHHHHHHh-CCCCcEEEEECCCCCC
Confidence            3444556779999999999988776665554442  468899999999998876655555555 4456899999999999


Q ss_pred             HHHHHHHHHH
Q 022351          117 VKEFLKFLQA  126 (298)
Q Consensus       117 i~~L~~~l~~  126 (298)
                      +++|++.|.+
T Consensus       149 i~~L~~~I~k  158 (160)
T d1xzpa2         149 LEKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998854

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=8.1e-09  Score=83.90  Aligned_cols=94  Identities=15%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHc----c-CCCEEEE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQ----Q-NCPSFGV  109 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~----~-~~~vi~i  109 (298)
                      ..+...+..+|++++|+|+..+.......+..++...+.|+|+|+||+|+.....  ..+..+.+..    . ..+++++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            3455567789999999999988777766665554456899999999999875432  2333333321    1 2379999


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||+++.|+++|++.|.+.+..
T Consensus       163 Sa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999877654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.73  E-value=3.5e-09  Score=85.38  Aligned_cols=101  Identities=14%  Similarity=0.078  Sum_probs=69.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+............+..+|.+++|+|+.++.+..+  ..+.....   ..++|+++|.||+|+.+........+.+.
T Consensus        64 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~  143 (176)
T d1fzqa_          64 VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN  143 (176)
T ss_dssp             EEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHH
Confidence            45555556666677788999999999999986533222  11222221   24789999999999986554444433331


Q ss_pred             -----ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 -----QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 -----~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                           ....+++.+||++|+|+++++++|.+
T Consensus       144 ~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         144 LHTIRDRVWQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             GGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence                 22346889999999999999998864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=2.3e-08  Score=80.84  Aligned_cols=93  Identities=15%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCC-----------CCcccHHHhccCCCCCCcEEEEEecCCCCChhh-H-HHHHHHHHccC
Q 022351           37 RAIADRMPLVDIILEVRDARIP-----------FSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQ-F-KEWITFFDQQN  103 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p-----------~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~-~-~~~~~~~~~~~  103 (298)
                      ..+...+..+|++++|+|++.+           ....+..+.+++...++|+++|+||+|++.... . ..+.+.+ ...
T Consensus        73 ~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-~~~  151 (184)
T d2cxxa1          73 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKF-EVP  151 (184)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHH-TCC
T ss_pred             hhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHh-ccc
Confidence            3455668899999999998642           333344444444446899999999999875432 2 2222333 222


Q ss_pred             C-----CEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          104 C-----PSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       104 ~-----~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +     .++++||+++.|+++|++.|.+.+++
T Consensus       152 ~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         152 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            1     47899999999999999999988875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=6.2e-09  Score=83.92  Aligned_cols=60  Identities=27%  Similarity=0.348  Sum_probs=43.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~~  212 (298)
                      ...|+++|.||||||||||+|++           .+...++..+++|+.... +.......+.++|+||...
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~-----------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLG-----------QKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM   65 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT-----------CSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC-----------CCceeeccCCCceEEEEEeeeecCCceeEeecCCCcee
Confidence            34689999999999999999993           456667777777766543 3333444567889999854

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.67  E-value=8.4e-09  Score=83.73  Aligned_cols=105  Identities=10%  Similarity=0.040  Sum_probs=70.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++..+........+..+|++++|+|+.++.+..+  ..+...+.   ..+.|+++|.||+|+.+....++..+.+.
T Consensus        65 i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~  144 (182)
T d1moza_          65 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN  144 (182)
T ss_dssp             EEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHH
Confidence            46666655555555678899999999999987654332  12333322   24689999999999965433333333321


Q ss_pred             -----ccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          101 -----QQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       101 -----~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                           ..+++++.+||++|+|+++++++|.+.+.+
T Consensus       145 ~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         145 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             TTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                 223468999999999999999999888765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.66  E-value=9.4e-09  Score=85.24  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=71.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCC-CCCcEEEEEecCCCCChhhH-H----HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPF-SSSRRILVLNKMDLASPTQF-K----EWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~-~~k~~IiVlNK~DL~~~~~~-~----~~~~~~   99 (298)
                      ..-||| ..+.+.+...+..+|++++|+||..+...+..+...++.. ..+++|+++||+|+.+.+.. +    +..+++
T Consensus        71 iDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l  149 (196)
T d1d2ea3          71 TDCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL  149 (196)
T ss_dssp             EECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ecCcch-HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHH
Confidence            344899 6688889999999999999999999877665554333222 44678889999999864322 2    222333


Q ss_pred             HccC-----CCEEEEecCCC----------cCHHHHHHHHHHHH
Q 022351          100 DQQN-----CPSFGVNSHNK----------DNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~-----~~vi~iSa~~~----------~gi~~L~~~l~~~i  128 (298)
                      ...+     .+++++|+++|          .++.+|++.|.+++
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            3222     46899999877          47788888876654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=9.9e-09  Score=84.68  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=39.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      .+|+++|.||||||||+|+|++           .+.     .|++|+......+ ..+..+.++||||...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~-----------~~~-----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~   58 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT-----------DSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVK   58 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH-----------SSC-----CCBCCCSSCEEETTGGGSSCEEEECCCCGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhC-----------CCC-----CCeEEecceEEEEEeCCeEEEEEecccccc
Confidence            3899999999999999999983           221     2556665544333 3344689999999764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=2.6e-08  Score=82.94  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=45.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh-cchhhhhcCCccceeecCCC-----CeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI-GRITAAEKGKLRHATVSPQP-----GETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~~~~~~~~~~p-----g~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      +.++|+++|.+++|||||+|+|+.. +....... -.........|     |+|.+.....+ ..+.++.++||||...
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~-~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVE-VKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSC-CCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcc-hhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchh
Confidence            4589999999999999999999742 21110000 01111222333     78887765443 4555799999999754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.9e-08  Score=78.76  Aligned_cols=105  Identities=18%  Similarity=0.066  Sum_probs=65.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-H----HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-Q----LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~----l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+..++........+..+|++|+|+|...+.+-.+. .    +.........|+++|.||+|+.....  ..+..++
T Consensus        52 i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~  131 (168)
T d2gjsa1          52 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC  131 (168)
T ss_dssp             EEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             eeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHH
Confidence            455444455555566789999999999999865332211 1    22222224679999999999965421  1222233


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+.+++.+||+++.|+++++..|.+.+..
T Consensus       132 ~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         132 AVVFDCKFIETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             HHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            33456788999999999999999988776654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.5e-08  Score=80.15  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=65.8

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHH----hccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQL----RNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNC  104 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l----~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~  104 (298)
                      ..+.....+.....+..+|++++++|+..+.......+    .... ..++|+++|+||+||.+.....     .+..+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~  137 (161)
T d2gj8a1          64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-----SEVNGH  137 (161)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-----EEETTE
T ss_pred             ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-----HHhCCC
Confidence            44445566777778899999999999987665443332    2222 2579999999999986543110     012345


Q ss_pred             CEEEEecCCCcCHHHHHHHHHHH
Q 022351          105 PSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       105 ~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      +++++||+++.|+++|+++|.+.
T Consensus       138 ~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         138 ALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHhh
Confidence            79999999999999999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9.1e-08  Score=77.66  Aligned_cols=105  Identities=14%  Similarity=0.070  Sum_probs=70.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-H-HhccCC---CCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-Q-LRNHHP---FSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~-l~~~l~---~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+.+.+........+..+|.+|+|+|+..+.+.... . +.....   ....|+++|.||+|+.....  .++..++
T Consensus        68 i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~  147 (186)
T d2f7sa1          68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL  147 (186)
T ss_dssp             EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             cccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHH
Confidence            466555566666666789999999999998764322211 1 122211   23567899999999964321  1222333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .++.+.+++.+||+++.|++++++.+.+.+.+
T Consensus       148 ~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         148 ADKYGIPYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             HHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            44567889999999999999999998876654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.50  E-value=4.5e-08  Score=78.69  Aligned_cols=102  Identities=14%  Similarity=0.032  Sum_probs=66.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHH-
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFF-   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~-   99 (298)
                      -|..+............+..+|.+++|+|+..+....+  ..+...+.   ....|+++|.||+|+.+.....+....+ 
T Consensus        60 i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~  139 (173)
T d1e0sa_          60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG  139 (173)
T ss_dssp             EEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHH
Confidence            34433334455566678999999999999976433221  12222222   2478999999999997543333333332 


Q ss_pred             ----HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 ----DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ----~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                          ...++.++.+||++++|+++++++|.+.
T Consensus       140 ~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         140 LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHh
Confidence                1224457889999999999999999754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.50  E-value=5.9e-08  Score=77.12  Aligned_cols=100  Identities=11%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH---
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD---  100 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---  100 (298)
                      ||+ .+........+..+|.+++|+|+.+......  ..+...+.   ..+.|+++|.||+|+.+.....+....+.   
T Consensus        54 ~G~-~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  132 (165)
T d1ksha_          54 GGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS  132 (165)
T ss_dssp             CCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             Ccc-hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhh
Confidence            444 5555556678999999999999876433222  12222221   25789999999999975433333333321   


Q ss_pred             --ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 --QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 --~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                        ...++++.+||++|+|+++++++|.+.+.
T Consensus       133 ~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         133 IRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             CCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence              22346789999999999999999887654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=5.9e-08  Score=78.00  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=22.9

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHh
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .....+|+++|.||||||||+|+|+
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHh
Confidence            3567899999999999999999998

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.49  E-value=2.8e-08  Score=80.70  Aligned_cols=66  Identities=24%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEE-EEEccCCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYS-LKIASHPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~-~~~~~~~~~~liDTPGi~  211 (298)
                      +.++|+++|.||+|||||+|+|++......     ..........|.|..... .....+..+.++||||..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~   70 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSA-----HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA   70 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEETTEEEEECCCSSHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCcee-----cccccceeeeeeeccccccccccCCcccccccccccc
Confidence            347899999999999999999985321110     011122223344433332 112234468899999953

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.8e-08  Score=79.11  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC-CCCCcEEEEEecCCCCChhhHHHHHHHHHc
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP-FSSSRRILVLNKMDLASPTQFKEWITFFDQ  101 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~-~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~  101 (298)
                      .-|..+............+..+|.+++|+|+.++.+...  ..+....+ ..+.|+++|.||+|+.......+.......
T Consensus        55 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  134 (170)
T d1i2ma_          55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK  134 (170)
T ss_dssp             EEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSS
T ss_pred             cccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHH
Confidence            356666656665556678999999999999987643322  11111111 247999999999999765433333344445


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+.+++.+||+++.|+++++..|.+.+.
T Consensus       135 ~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_         135 KNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             CSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            6778999999999999999988876553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=8.2e-08  Score=76.49  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||||+++.
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999983

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.1e-08  Score=76.97  Aligned_cols=105  Identities=17%  Similarity=-0.026  Sum_probs=68.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~   98 (298)
                      -|..+...+........+..+|++++|+|..++.+....     .+.........|+++|.||+|+....  ..++..++
T Consensus        57 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~  136 (171)
T d2erya1          57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL  136 (171)
T ss_dssp             EEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH
T ss_pred             cccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHH
Confidence            344333344555555677889999999999876332221     12222223578999999999986431  12333344


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+..+.+++.+||+++.|+++++..|.+.+.+
T Consensus       137 ~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             HHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            44567788999999999999999999877754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=1.3e-07  Score=75.62  Aligned_cols=59  Identities=14%  Similarity=0.226  Sum_probs=38.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGI  210 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi  210 (298)
                      -++|+++|.+|||||||||+|..          ..-.....+.+|.+.....+..... -.+.++||||-
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~   64 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYAD----------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ   64 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHc----------CCCCcccccccccceeeEEEEeecceEEEEEEECCCc
Confidence            46899999999999999999983          1112233445555554444333221 14788999994

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.44  E-value=4.4e-08  Score=78.56  Aligned_cols=104  Identities=17%  Similarity=0.005  Sum_probs=67.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~   98 (298)
                      -|..+...+........+..+|.+++|+|..++.+...     ..+.+.....+.|+++|.||+|+....  ..++..++
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~  135 (168)
T d1u8za_          56 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR  135 (168)
T ss_dssp             EEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             ccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHH
Confidence            45544445555555667889999999999986533222     112222223578999999999985431  12333344


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+..+.+++.+||+++.|+++++..|.+.+.
T Consensus       136 ~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         136 ADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             HHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            4455778899999999999999888766553

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.43  E-value=1.6e-07  Score=74.43  Aligned_cols=54  Identities=20%  Similarity=0.354  Sum_probs=36.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc-cCCCEEEEeCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA-SHPNIYVLDTPGI  210 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~-~~~~~~liDTPGi  210 (298)
                      .++|+++|.+|||||||+|+|.+           ....++.+.-|.    ....+. .+..+.++||||-
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~-----------~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~G~   56 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG-----------EDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQ   56 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT-----------CCCSSCCCCSSE----EEEEEEETTEEEEEEEECCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC-----------CCCCcccceEee----eeeeccccccceeeeecCcc
Confidence            46899999999999999999973           233333333333    222221 2235889999994

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.41  E-value=1.2e-07  Score=79.81  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCC-CcEEEEEecCCCCChh--hH----HHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSS-SRRILVLNKMDLASPT--QF----KEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~-k~~IiVlNK~DL~~~~--~~----~~~~~~~   99 (298)
                      .-||| ..+...+...+..+|.+++|+||..+...+..+...++...+ +.+|+++||+|+.+..  ..    ++...++
T Consensus        95 D~PGH-~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~  173 (222)
T d1zunb3          95 DTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFA  173 (222)
T ss_dssp             ECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred             eccch-hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhh
Confidence            34899 678888899999999999999999887766555433333345 5578999999998632  22    2233344


Q ss_pred             HccCC-----CEEEEecCCCcCHH
Q 022351          100 DQQNC-----PSFGVNSHNKDNVK  118 (298)
Q Consensus       100 ~~~~~-----~vi~iSa~~~~gi~  118 (298)
                      +..++     +++++||.+|.|+.
T Consensus       174 ~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         174 EGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             HhhccCCCceEEEEEEcccCccCC
Confidence            44433     46899999998863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=9.9e-08  Score=76.35  Aligned_cols=103  Identities=14%  Similarity=0.036  Sum_probs=67.1

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHh--ccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLR--NHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFD  100 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~--~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~  100 (298)
                      |..+.+.+........+..+|.+|+|+|...+.+....  .+.  ........|+++|.||+|+.....  .++..+..+
T Consensus        59 wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~  138 (169)
T d3raba_          59 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD  138 (169)
T ss_dssp             EEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHH
Confidence            54333344444445679999999999999875332221  111  111124678899999999864321  122223334


Q ss_pred             ccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       101 ~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ..+++++.+||+++.|++++++.+.+.+.
T Consensus       139 ~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         139 HLGFEFFEASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             HHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HcCCEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            55778999999999999999998887664

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.7e-07  Score=73.20  Aligned_cols=55  Identities=25%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      +|+++|.||||||||+|+|.+           ++...+.+.++++.....   .......+.||+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~-----------~~~~~~~~t~~~~~~~~~---~~~~~~~~~~~~~~~~   56 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN-----------DRLATLQPTWHPTSEELA---IGNIKFTTFDLGGHIQ   56 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCSCEEEEEC---CTTCCEEEEECCCSGG
T ss_pred             EEEEECCCCCCHHHHHHHHhC-----------CCCCeeeceeeEeEEEec---cCCeeEEEEeeccchh
Confidence            789999999999999999983           445566666666543221   2233688999998754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2.3e-07  Score=74.67  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=38.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      +.++|+++|.+|||||||||+|..          ........+.++.+.....+.+... -.+.++||||...
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   68 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTD----------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER   68 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh----------CCCCCccccceeecceeEEEEEeccccEEEEEECCCchh
Confidence            357899999999999999999983          1111222233333333333333222 1478999999644

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=3.7e-08  Score=78.49  Aligned_cols=101  Identities=16%  Similarity=0.074  Sum_probs=66.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..++..+........+..+|++++|+|..++.+..+     +.+.+.  ..+.|+++|.||+|+.....  .++..++
T Consensus        55 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~~~  132 (164)
T d1z2aa1          55 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAEGL  132 (164)
T ss_dssp             EECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             eeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhccccccccccc--CCCceEEEeeccCCcccceeeeehhhHHH
Confidence            34444434444444567889999999999986533222     112222  25789999999999864321  1222233


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .++.+.+++.+||+++.|++++++.|.+.+
T Consensus       133 ~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         133 AKRLKLRFYRTSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             HHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             HHHcCCEEEEeccCCCcCHHHHHHHHHHHH
Confidence            334567899999999999999998876543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.9e-07  Score=76.49  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=40.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi~~  212 (298)
                      -++|+|+|.+|||||||+|.++.          ..-.....+..|++.....+.+.... .+.++||||--.
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~----------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~   67 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSD----------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER   67 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH----------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHhh----------CCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchh
Confidence            36899999999999999999983          12222334445555544444443222 477899999644

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.38  E-value=1.1e-07  Score=75.54  Aligned_cols=102  Identities=21%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..+............+..+|.+++|+|+.++.+-.+  ..+..++.   ..+.|+++|.||+|+..........+.+.
T Consensus        51 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~  130 (164)
T d1zd9a1          51 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMN  130 (164)
T ss_dssp             EEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             EeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHH
Confidence            44443335566666778999999999999976532211  12222222   25789999999999975443344444432


Q ss_pred             -----ccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          101 -----QQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       101 -----~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                           ..+.+++.+||++++|+++++++|.+.
T Consensus       131 ~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         131 LSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence                 223468899999999999999988653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.3e-07  Score=74.18  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeE--EEEEccC-CCEEEEeCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIY--SLKIASH-PNIYVLDTPG  209 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~--~~~~~~~-~~~~liDTPG  209 (298)
                      -++|+++|.+|||||||||.|..           ++ -.....|+++.+..  .+.+... -.+.++||||
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~-----------~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G   63 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQ-----------GL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG   63 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH-----------SS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh-----------CC-CCCcccccccceEEEEEEEECCEEEEEEEEECCC
Confidence            36899999999999999999983           11 12223333333333  2333221 1367899999

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.7e-08  Score=78.71  Aligned_cols=104  Identities=20%  Similarity=0.033  Sum_probs=70.0

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      |..+...+........+..+|++|+|+|..++.+...     ..+.+.....+.|+++|.||+|+....  ..++...+.
T Consensus        59 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~  138 (173)
T d2fn4a1          59 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG  138 (173)
T ss_dssp             EECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             cccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHH
Confidence            5554445444445567788999999999986533221     112222123578999999999986431  123333444


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +..+.+++.+||+++.|++++++.+.+.+.+
T Consensus       139 ~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         139 ASHHVAYFEASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             HHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            4567788999999999999999999887765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.7e-07  Score=77.32  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEc--cCCCEEEEeCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIA--SHPNIYVLDTPGI  210 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~--~~~~~~liDTPGi  210 (298)
                      +|+++|.||||||||+|+|++           ++...+.+..+++.  ..+.+.  ....+.++||||.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~-----------~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~d~~g~   57 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT-----------GQYRDTQTSITDSS--AIYKVNNNRGNSLTLIDLPGH   57 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-----------SCCCCBCCCCSCEE--EEEECSSTTCCEEEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHc-----------CCCCcccCCeeEEE--EEEEEeeeeeeeeeeeecccc
Confidence            689999999999999999984           23333333333333  333332  2335889999995

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.36  E-value=2.6e-07  Score=73.95  Aligned_cols=60  Identities=23%  Similarity=0.355  Sum_probs=42.0

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ....++|+++|.+|||||||+|+|..           ++...+.+.+|++...  +.. .+-.+.++|+||-..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~-----------~~~~~~~~~~~~~~~~--i~~-~~~~~~i~d~~g~~~   72 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS-----------EDISHITPTQGFNIKS--VQS-QGFKLNVWDIGGQRK   72 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC-----------SCCEEEEEETTEEEEE--EEE-TTEEEEEEECSSCGG
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc-----------CCCCcceeeeeeeEEE--ecc-CCeeEeEeecccccc
Confidence            35578999999999999999999972           3445555666665432  222 122578999999643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.36  E-value=9.4e-08  Score=80.62  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .|+++|.||+|||||+|+|++
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            499999999999999999985

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.6e-07  Score=74.73  Aligned_cols=94  Identities=19%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHccCCCEEEE
Q 022351           36 TRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQQNCPSFGV  109 (298)
Q Consensus        36 ~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~i  109 (298)
                      .......+..++++++|+|...+.+...     ..+.+.....+.|+++|.||+|+..... .++..++.+..+.+++.+
T Consensus        65 ~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~  144 (166)
T d1ctqa_          65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIET  144 (166)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             ccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEE
Confidence            3334466788999999999986533221     1122222234689999999999965332 222233334456789999


Q ss_pred             ecCCCcCHHHHHHHHHHHHH
Q 022351          110 NSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~  129 (298)
                      ||+++.|+++++..+.+.+.
T Consensus       145 Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         145 SAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHH
Confidence            99999999999988876654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.2e-07  Score=71.85  Aligned_cols=91  Identities=25%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCccc-HHH----hccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEF-DQL----RNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~-~~l----~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~  112 (298)
                      ...+..+|++|+|+|...+.+..+ ..+    .......+.|+++|.||+||.....  .++..++....+.+++.+||+
T Consensus        72 ~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak  151 (172)
T d2g3ya1          72 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAA  151 (172)
T ss_dssp             HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             cccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCC
Confidence            356899999999999976433221 111    1111124789999999999864321  122222333456788999999


Q ss_pred             CCcCHHHHHHHHHHHHHh
Q 022351          113 NKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~gi~~L~~~l~~~i~~  130 (298)
                      ++.|+++++..|.+.+..
T Consensus       152 ~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         152 VQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999988876654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.1e-08  Score=75.98  Aligned_cols=103  Identities=18%  Similarity=0.065  Sum_probs=70.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccC--CCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNHH--PFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l--~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..++..+........+..+|.+++|+|...+.+..+  ..+....  ...+.|+++|.||+|+.+..  ..++..++.
T Consensus        53 i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~  132 (164)
T d1yzqa1          53 LWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA  132 (164)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             ecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHH
Confidence            45555545555566678999999999999986543222  1111110  12478899999999996432  233444455


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +..+.+++.+||+++.|++++++.|.+.+
T Consensus       133 ~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         133 KELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             HHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             HHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            56677889999999999999999987654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=4.2e-07  Score=73.43  Aligned_cols=93  Identities=16%  Similarity=0.265  Sum_probs=63.1

Q ss_pred             HHHHHhcCCCCeEEEEEeCCCCCCcccHH--H-----hcc--CCCCCCcEEEEEecCCCCChhhH-HHHHHHHHccCCCE
Q 022351           37 RAIADRMPLVDIILEVRDARIPFSSEFDQ--L-----RNH--HPFSSSRRILVLNKMDLASPTQF-KEWITFFDQQNCPS  106 (298)
Q Consensus        37 ~~i~~~l~~aDlVl~VvDa~~p~~~~~~~--l-----~~~--l~~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~~~~~~v  106 (298)
                      +.+...+..++.++++++...........  .     ...  ....++|+++|+||+|+.+.... +.+.+.+ ..+.++
T Consensus        71 ~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~v  149 (185)
T d1lnza2          71 HQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL-TDDYPV  149 (185)
T ss_dssp             HHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC-CSCCCB
T ss_pred             HHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh-ccCCcE
Confidence            34455677899999999876543322111  0     111  11247899999999999875432 3333333 346789


Q ss_pred             EEEecCCCcCHHHHHHHHHHHHHh
Q 022351          107 FGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       107 i~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++||+++.|+++|++.|.+.+++
T Consensus       150 ~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         150 FPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhhh
Confidence            999999999999999999888754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=3.8e-08  Score=78.60  Aligned_cols=102  Identities=12%  Similarity=-0.035  Sum_probs=65.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      |..+++.+........+..+|.+++|+|..++.+....     .+.+.....+.|+++|.||+|+.....  .++..++.
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a  136 (167)
T d1xtqa1          57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA  136 (167)
T ss_dssp             EECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH
Confidence            44433333322234678899999999999876433221     122222235689999999999864321  22333333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ++.+.+++.+||+++.|++++++.|...+
T Consensus       137 ~~~~~~~~e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         137 ESWNAAFLESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             HHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEecCCCCCHHHHHHHHHHHh
Confidence            34567789999999999999988876544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.1e-07  Score=76.28  Aligned_cols=104  Identities=19%  Similarity=0.060  Sum_probs=67.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+...+........+..+|++++|+|..++.+-.+     ..+.+.....+.|+++|.||+|+.....  .++..++
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~  135 (169)
T d1x1ra1          56 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM  135 (169)
T ss_dssp             EEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHH
T ss_pred             ccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHH
Confidence            34433333333334456778999999999987533222     1222222235789999999999865422  2333444


Q ss_pred             HHccCCCEEEEecCCCc-CHHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKD-NVKEFLKFLQAHVR  129 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~-gi~~L~~~l~~~i~  129 (298)
                      .+..+.+++.+||+++. |+++++..+.+.+.
T Consensus       136 ~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         136 ATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             HHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHH
Confidence            44557789999999875 99999888876654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=9.2e-07  Score=70.62  Aligned_cols=102  Identities=17%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccC---CCCCCcEEEEEecCCCCChhh---HHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHH---PFSSSRRILVLNKMDLASPTQ---FKEW   95 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l---~~~~k~~IiVlNK~DL~~~~~---~~~~   95 (298)
                      |...+..+........+..+|.+++|+|..++.+...     ..+....   ...+.|+++|.||+|+.....   .+..
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~  136 (175)
T d1ky3a_          57 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA  136 (175)
T ss_dssp             ECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHH
T ss_pred             eccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHH
Confidence            3333335556666678999999999999986543211     1122211   124689999999999875321   1222


Q ss_pred             HHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           96 ITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        96 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .++.+..+ .+++.+||+++.|+++++..|.+.+
T Consensus       137 ~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         137 QELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA  170 (175)
T ss_dssp             HHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            22223333 5789999999999999988887654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=1.1e-07  Score=78.94  Aligned_cols=63  Identities=13%  Similarity=-0.024  Sum_probs=49.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCc-EEEEEecCCCCCh
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSR-RILVLNKMDLASP   89 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~   89 (298)
                      -.-||| ..+...+...+..+|++|+|+||..+...+..+...++...+.| +++++||+|+++.
T Consensus        72 iDtPGh-~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          72 VDCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             EECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred             EeCCCc-hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCC
Confidence            344899 56888889999999999999999998887765554444345665 6677999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=7.5e-07  Score=77.66  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+|+|+|.-++|||||||+|++
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhC
Confidence            34799999999999999999985

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=5e-07  Score=71.52  Aligned_cols=97  Identities=23%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHHH
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFFD  100 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~~  100 (298)
                      .+|+..........++..+|++|+|+|..++.+..+     ..+.+.....+.|+++|.||+||....  ..++..++.+
T Consensus        58 ~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~  137 (165)
T d1z06a1          58 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD  137 (165)
T ss_dssp             CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH
Confidence            344433332334567899999999999987633222     122232233578999999999986542  1222333444


Q ss_pred             ccCCCEEEEecCCC---cCHHHHHHHH
Q 022351          101 QQNCPSFGVNSHNK---DNVKEFLKFL  124 (298)
Q Consensus       101 ~~~~~vi~iSa~~~---~gi~~L~~~l  124 (298)
                      ..+.+++.+||+++   .|++++...|
T Consensus       138 ~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         138 THSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             HTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             HCCCEEEEEecccCCcCcCHHHHHHHh
Confidence            56778999999875   4787776654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.2e-07  Score=71.99  Aligned_cols=60  Identities=22%  Similarity=0.200  Sum_probs=36.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceee--cCCCCeeeeeEEEEEccCC-CEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATV--SPQPGETKDIYSLKIASHP-NIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~--~~~pg~T~~~~~~~~~~~~-~~~liDTPGi~~  212 (298)
                      .++|+++|.+|||||||+|.++.           ++....  .+..+.+.....+...+.. .+.++||||-..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~   68 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD-----------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH-----------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh-----------CCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchh
Confidence            46899999999999999999983           222111  2222333332233332221 477999999543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.3e-07  Score=75.35  Aligned_cols=103  Identities=17%  Similarity=0.066  Sum_probs=66.2

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      |..+............+..+|++++|+|...+.+..+.     .+.......+.|+++|.||+|+....  ..++.....
T Consensus        56 ~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  135 (167)
T d1kaoa_          56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA  135 (167)
T ss_dssp             EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             ccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHH
Confidence            44433333444455677889999999999865332221     11222223568999999999986431  122222333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +..+.+++.+||+++.|+++++..+.+.+.
T Consensus       136 ~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         136 EEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            345678999999999999999988876553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.28  E-value=6.1e-07  Score=71.52  Aligned_cols=103  Identities=10%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-----HhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-----LRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD  100 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-----l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~  100 (298)
                      -|..++...........+..++.+++|+|..+........     ........+.|+++|.||+|+.......+..+.+.
T Consensus        63 ~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~  142 (177)
T d1zj6a1          63 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK  142 (177)
T ss_dssp             EEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             EeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHH
Confidence            4444554445455556788899999999998654332211     11111125789999999999975544444444432


Q ss_pred             -----ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          101 -----QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       101 -----~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                           ..+.+++.+||++|+|+++++++|.+.+
T Consensus       143 ~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         143 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                 1234689999999999999999998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.4e-07  Score=71.13  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||||+++.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999983

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.27  E-value=4.8e-07  Score=70.54  Aligned_cols=22  Identities=18%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.||||||||+|+|.+
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999983

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=1.3e-07  Score=75.40  Aligned_cols=102  Identities=15%  Similarity=0.049  Sum_probs=68.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~   98 (298)
                      -|..++..+........+..+|.+++|+|...+.+..+.     .+... .....|+++|.||+|+....  ..++..++
T Consensus        57 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~  135 (167)
T d1z0ja1          57 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY  135 (167)
T ss_dssp             EEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             eeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHH
Confidence            466555455555555678999999999998765332221     11111 13578999999999996431  12233334


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+..+.+++.+||+++.|+++++..|.+.+
T Consensus       136 ~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         136 ADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            445677889999999999999988887654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2e-07  Score=74.96  Aligned_cols=103  Identities=22%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~   98 (298)
                      -|..+...+........+..+|++|+|+|..++.+...  .   .+.... ..+.|+++|.||+|+.+..  ..+.....
T Consensus        57 i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~  135 (175)
T d2f9la1          57 IWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAF  135 (175)
T ss_dssp             EEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             ecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHh
Confidence            34433334444444566889999999999987533221  1   122222 2468999999999997432  22233334


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      ....+.+++.+||+++.|++++++.+.+.+.
T Consensus       136 ~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~  166 (175)
T d2f9la1         136 AEKNNLSFIETSALDSTNVEEAFKNILTEIY  166 (175)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcccCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            4456678999999999999999887766543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.4e-07  Score=71.47  Aligned_cols=60  Identities=22%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC-CEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP-NIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~-~~~liDTPGi~  211 (298)
                      -++|+++|.+|||||||+|++..          ..-.....+.++.+.....+.+.... .+.+.||||--
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e   64 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTR----------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE   64 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH----------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh----------CCCCCcccccccceeeeEEEEECCEEEEEEecccCCcH
Confidence            36899999999999999999983          11111222333333333333333221 47799999953

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.4e-07  Score=74.13  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HH---HhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQ---LRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~---l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..++..+........+..+|.+++|+|..++.+...  ..   +.+. .....|+++|.||+|+.....  .++..++
T Consensus        58 i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~  136 (171)
T d2ew1a1          58 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEF  136 (171)
T ss_dssp             EEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHH
Confidence            35544334444455567999999999999876532211  11   1121 124688999999999864321  2233333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      .+..+.+++.+||++|.|+++++..|..
T Consensus       137 ~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1         137 SEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            3445678999999999999998766543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.25  E-value=1.1e-06  Score=69.88  Aligned_cols=61  Identities=18%  Similarity=0.288  Sum_probs=39.9

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ++.++|+++|.||||||||+|+|..           .+.+.+.+..+++.....  . ....+.++|++|.....
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~-----------~~~~~~~~~~~~~~~~~~--~-~~~~~~~~d~~~~~~~~   73 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM-----------NEVVHTSPTIGSNVEEIV--I-NNTRFLMWDIGGQESLR   73 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT-----------TSCEEEECCSCSSCEEEE--E-TTEEEEEEECCC----C
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc-----------CCCCccccccceeEEEEe--e-cceEEEEeccccccccc
Confidence            4568999999999999999999983           445556665555432221  1 12257889999875543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=8.1e-07  Score=71.74  Aligned_cols=60  Identities=22%  Similarity=0.255  Sum_probs=37.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      ++|+++|.+|||||||+|.+..          +.-.....+..|.+.....+..... -.+.++||||...
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~----------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   63 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN----------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER   63 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH----------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHh----------CCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccc
Confidence            5899999999999999999983          1111222233444443333333221 1477899999755

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.23  E-value=1.6e-06  Score=75.91  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+|||..++|||||||+|++
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCHHHHHHHHhC
Confidence            4799999999999999999985

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.1e-06  Score=70.36  Aligned_cols=102  Identities=14%  Similarity=0.066  Sum_probs=65.3

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhcc---CCCCCCcEEEEEecCCCCChh-hHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNH---HPFSSSRRILVLNKMDLASPT-QFKEWIT   97 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~---l~~~~k~~IiVlNK~DL~~~~-~~~~~~~   97 (298)
                      |..+...+........+..+|.++++.|...+.+...     +.+..+   ....+.|+++|.||+|+.... ..++..+
T Consensus        60 ~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~  139 (174)
T d1wmsa_          60 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA  139 (174)
T ss_dssp             EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred             ecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHH
Confidence            4333333344455578999999999999986533221     112221   112468999999999996532 1222333


Q ss_pred             HHHcc-CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           98 FFDQQ-NCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        98 ~~~~~-~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.++. ..+++.+||+++.|++++++.+.+.+
T Consensus       140 ~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         140 WCRDNGDYPYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             HHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            33333 46889999999999999988776543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.2e-07  Score=72.22  Aligned_cols=103  Identities=17%  Similarity=0.026  Sum_probs=69.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+.+.+........+..+|++++|+|...+.+..+.     .+.... ..+.|+++|.||+|+.....  .+...++
T Consensus        58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~  136 (174)
T d2bmea1          58 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF  136 (174)
T ss_dssp             EEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH
Confidence            444444455666677889999999999999865332221     112221 25789999999999854321  1222333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      .+..+.+++.+||+++.|+++++..+.+.+-
T Consensus       137 ~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~  167 (174)
T d2bmea1         137 AQENELMFLETSALTGENVEEAFVQCARKIL  167 (174)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEeeCCCCcCHHHHHHHHHHHHH
Confidence            3456778899999999999999888766543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.1e-07  Score=71.36  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|++..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            37899999999999999999983

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2e-06  Score=68.67  Aligned_cols=94  Identities=15%  Similarity=0.083  Sum_probs=65.5

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHH----HHHcc--CCCEEE
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWIT----FFDQQ--NCPSFG  108 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~----~~~~~--~~~vi~  108 (298)
                      ...........++.++.+.|+..+.................+.++++||+|+..........+    .+...  ..++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence            334444557777888888888876655554443333336789999999999998755443333    33222  237899


Q ss_pred             EecCCCcCHHHHHHHHHHHH
Q 022351          109 VNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +||++|.|+++|++.|.+++
T Consensus       168 vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999987764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.22  E-value=9.5e-07  Score=72.76  Aligned_cols=71  Identities=21%  Similarity=0.185  Sum_probs=43.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCc----cceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKL----RHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGIL  211 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~----~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~  211 (298)
                      +.++|+++|.+++|||||+|+|++.-.......-+.    .........|.|.+...+.+ ..+..+.++||||-.
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~   77 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA   77 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH
Confidence            458999999999999999999985211000000000    01112233477877664443 445579999999963

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=8.9e-07  Score=70.14  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=36.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILPP  213 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~~  213 (298)
                      ++|+++|.||||||||+|.+..          +.......+..|.+.....+...+ ...+.++||||-...
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~----------~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   64 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK----------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF   64 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH----------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred             EEEEEECCCCcCHHHHHHHHHh----------CCCCcccccccccccceeeeeecCceeeeeeeccCCccch
Confidence            6899999999999999999983          111111222233332222222221 114789999996654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.22  E-value=5.7e-07  Score=71.94  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      ...++|+++|.||||||||+|++..           +...+..+..|.+....   ....-.+.++||||...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~-----------~~~~~~~~t~~~~~~~~---~~~~~~~~i~D~~g~~~   68 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL-----------GQSVTTIPTVGFNVETV---TYKNVKFNVWDVGGQDK   68 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC-----------CCCEEEEEETTEEEEEE---EETTEEEEEEEESCCGG
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc-----------CCCCCccceeeeeEEEe---eccceeeEEecCCCcch
Confidence            4568999999999999999999972           23333333333332111   11222578999999644

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.2e-07  Score=71.25  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      |..+.+.+........+..+|++++|+|..++.+...  .   .+.+. .....|++++.||+|+....  ..++..+..
T Consensus        58 ~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~  136 (166)
T d1z0fa1          58 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA  136 (166)
T ss_dssp             EECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             eccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHH
Confidence            5444444444455567889999999999876432211  1   11111 13568899999999985432  123344444


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      +..+.+++.+||+++.|+++++..+.+.
T Consensus       137 ~~~~~~~~e~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         137 EENGLLFLEASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             HHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            5567789999999999999998877653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=7.5e-07  Score=71.15  Aligned_cols=60  Identities=20%  Similarity=0.247  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCC--CEEEEeCCCCCC
Q 022351          143 VTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHP--NIYVLDTPGILP  212 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~--~~~liDTPGi~~  212 (298)
                      ++|+++|.+|||||||+|++..          ........+.++.+............  .+.+.||||-..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~   64 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN----------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER   64 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH----------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----
T ss_pred             EEEEEECCCCcCHHHHHHHHHc----------CCCCCccCcccccceeeeeeeecCcccccceeeccCCchh
Confidence            6899999999999999999983          11111222333333222222222222  367899999644

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.7e-07  Score=73.65  Aligned_cols=103  Identities=17%  Similarity=0.015  Sum_probs=64.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccC-CCCCCcEEEEEecCCCCChhh--HHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF-----DQLRNHH-PFSSSRRILVLNKMDLASPTQ--FKEWIT   97 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l-~~~~k~~IiVlNK~DL~~~~~--~~~~~~   97 (298)
                      -|..+............+..+|++++|+|+..+.+..+     ..+.+.. ...+.|+++|.||+|+.....  .++..+
T Consensus        54 ~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~  133 (171)
T d2erxa1          54 ITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA  133 (171)
T ss_dssp             EEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH
Confidence            35544444444444566778999999999986533221     1122211 125689999999999864321  122223


Q ss_pred             HHHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           98 FFDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        98 ~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      +.+..+.+++.+||+++.|++++++.|.+.+
T Consensus       134 ~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         134 LARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             HHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             HHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            3344567889999999999999988876543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.18  E-value=6.5e-07  Score=73.32  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|+++|.+|+|||||+|+|++
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHh
Confidence            3567999999999999999999985

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.18  E-value=8.9e-07  Score=71.31  Aligned_cols=59  Identities=20%  Similarity=0.330  Sum_probs=37.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      .+.++|+++|.+|||||||+|.|..           +......+..|.+...  +.. ..-.+.++||||...
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~-----------~~~~~~~~t~~~~~~~--~~~-~~~~~~i~D~~g~~~   73 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI-----------GEVVTTKPTIGFNVET--LSY-KNLKLNVWDLGGQTS   73 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC-----------SEEEEECSSTTCCEEE--EEE-TTEEEEEEEEC----
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc-----------CCCCccccccceEEEE--Eee-CCEEEEEEecccccc
Confidence            5679999999999999999999972           3344454545543322  111 222578999999755

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=6.5e-07  Score=71.67  Aligned_cols=105  Identities=13%  Similarity=0.022  Sum_probs=61.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-HH-hcc--CCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-QL-RNH--HPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-~l-~~~--l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      -|..++..+........+..+|++|+|+|+.++.+.... .+ ..+  ....+.|+++|.||.|+....  ..+......
T Consensus        59 i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~  138 (173)
T d2fu5c1          59 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA  138 (173)
T ss_dssp             EEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred             EEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHH
Confidence            355444455555555679999999999999876432211 11 111  113578999999999997532  222333344


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+.+++.+||+++.|+++++..|.+.+.+
T Consensus       139 ~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         139 LDYGIKFMETSAKANINVENAFFTLARDIKA  169 (173)
T ss_dssp             HHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4567789999999999999999998887755

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.1e-07  Score=73.13  Aligned_cols=102  Identities=21%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC--CCCCcEEEEEecCCCCChhhHH--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP--FSSSRRILVLNKMDLASPTQFK--------   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~--~~~k~~IiVlNK~DL~~~~~~~--------   93 (298)
                      -|..+............+..+|.+|+|+|..++.+..+.  .+...+.  ..+.|+++|.||+|+.......        
T Consensus        54 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  133 (177)
T d1kmqa_          54 LWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ  133 (177)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTC
T ss_pred             ccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhc
Confidence            355554455555556789999999999999865332111  1111111  2478999999999997543211        


Q ss_pred             ------HHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHH
Q 022351           94 ------EWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        94 ------~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                            +..+..+..+ .+++.+||+++.|++++++.+.+.
T Consensus       134 ~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         134 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRA  174 (177)
T ss_dssp             CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence                  1222222333 367889999999999998887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.16  E-value=1.6e-06  Score=67.88  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=38.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILP  212 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~  212 (298)
                      +.++|+++|.||||||||||++..           ++...+.+..+.+..  .+. .....+.+.|+||...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~-----------~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~   61 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV-----------GEVVTTIPTIGFNVE--TVT-YKNLKFQVWDLGGLTS   61 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH-----------SSCCCCCCCSSEEEE--EEE-ETTEEEEEEEECCCGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC-----------CCCcceecccceeee--eec-cCceEEEEeecccccc
Confidence            458999999999999999999983           333444444443321  111 1223577889998754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.4e-07  Score=73.07  Aligned_cols=103  Identities=11%  Similarity=0.050  Sum_probs=65.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhhH---------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQF---------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~~---------   92 (298)
                      -|..+.+..........+..+|++++|+|+.++.+..+.  .+...+  ...+.|+++|.||+||.+....         
T Consensus        61 i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~  140 (185)
T d2atxa1          61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKE  140 (185)
T ss_dssp             EECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTC
T ss_pred             cccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhccc
Confidence            566555454444445689999999999999875432211  111111  1257899999999999753211         


Q ss_pred             -----HHHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           93 -----KEWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        93 -----~~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                           ++..++.++.+ ..++.+||+++.|++++++.+...+
T Consensus       141 r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         141 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             CCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence                 12222222333 4778899999999999988776543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.9e-07  Score=72.53  Aligned_cols=103  Identities=18%  Similarity=-0.000  Sum_probs=65.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+...........++..+|++++|+|..++.+..+.     .+.+.....+.|+++|.||+|+.....  .++....
T Consensus        55 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~  134 (167)
T d1c1ya_          55 ILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL  134 (167)
T ss_dssp             EEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             cccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHH
Confidence            344443333333445678889999999999875332221     122221124689999999999964321  1222233


Q ss_pred             HHc-cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~~-~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .++ .+.+++.+||+++.|+++++..|.+.+
T Consensus       135 ~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         135 ARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             HHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHhCCCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence            322 456788999999999999988887554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.15  E-value=1.5e-06  Score=68.79  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|.|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            6899999999999999999973

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.15  E-value=1.2e-06  Score=68.21  Aligned_cols=101  Identities=14%  Similarity=0.063  Sum_probs=66.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccCC---CCCCcEEEEEecCCCCChhhHHHHHHHH--
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHHP---FSSSRRILVLNKMDLASPTQFKEWITFF--   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l~---~~~k~~IiVlNK~DL~~~~~~~~~~~~~--   99 (298)
                      |..++..............++.+++++|..++......  .+...+.   ....|++++.||+|+.+.....+.....  
T Consensus        49 ~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~  128 (160)
T d1r8sa_          49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL  128 (160)
T ss_dssp             EECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG
T ss_pred             ecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHH
Confidence            44444455555666789999999999999875332221  1122211   2468999999999987654333322221  


Q ss_pred             ---HccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          100 ---DQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       100 ---~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                         +..+.+++++||++|+|+++++++|.+.
T Consensus       129 ~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         129 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             GGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence               1234578899999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=3.7e-07  Score=73.16  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=10.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -++|+++|.+|||||||+|+|++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999983

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4e-07  Score=72.68  Aligned_cols=101  Identities=17%  Similarity=0.094  Sum_probs=66.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+...+........+..+|.+++|+|...+.+...  .   .+.+. ...+.|+++|.||+|+.....  .+...+.
T Consensus        59 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~  137 (170)
T d1r2qa_          59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY  137 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             eccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHH
Confidence            45544444444445567899999999999876432221  1   11121 135789999999999864321  2233333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                      .+..+.+++.+||+++.|+++++..|.+.
T Consensus       138 ~~~~~~~~~e~SAk~g~~V~e~f~~l~~~  166 (170)
T d1r2qa_         138 ADDNSLLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHhcCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            34556789999999999999998888654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.2e-06  Score=68.49  Aligned_cols=61  Identities=26%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      -++|+++|.+|||||||+|.+..          +.-.....+.++.+.....+...+. -.+.++||||...
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   67 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVT----------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER   67 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH----------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh----------CCCCCccccceeeeeeeeeeeecCceeeEeeecccCcce
Confidence            36899999999999999999983          1111222233344433333333221 1367999999643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=1.9e-06  Score=68.49  Aligned_cols=61  Identities=23%  Similarity=0.278  Sum_probs=38.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccC-CCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASH-PNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~-~~~~liDTPGi~~  212 (298)
                      .++|+++|.+|||||||++.+..          +.-.....+.+|.......+..... -.+.++||||...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~----------~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~   64 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVS----------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER   64 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh----------CCCCccccccccceeeccccccccccccccccccCCchh
Confidence            47899999999999999999983          1112223344444332223322211 1488999999643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.3e-07  Score=72.24  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=64.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhcc--CCCCCCcEEEEEecCCCCChhh--HHHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNH--HPFSSSRRILVLNKMDLASPTQ--FKEWITFF   99 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~--l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~   99 (298)
                      -|..+...+........+..+|++++|+|..++.+..+  ..+...  ......|+++|.||+|+.....  .++..++.
T Consensus        56 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a  135 (167)
T d1z08a1          56 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA  135 (167)
T ss_dssp             EEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred             eeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHH
Confidence            45544444455555567999999999999986533221  111111  0124678899999999864321  23333444


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      ++.+.+++.+||+++.|+++++..|.+.+
T Consensus       136 ~~~~~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         136 ESVGAKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             HHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence            45677899999999999999998887654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.4e-06  Score=69.34  Aligned_cols=22  Identities=55%  Similarity=0.747  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|.+.+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            5799999999999999999973

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.6e-07  Score=70.92  Aligned_cols=102  Identities=18%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--H---HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--D---QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~---~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      |..+............+..+|++++|+|..++.+...  .   .+.+. ...+.|+++|.||+|+....  ..+....+.
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a  135 (173)
T d2a5ja1          57 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA  135 (173)
T ss_dssp             ECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             ecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHH
Confidence            4443333333344566788999999999987533221  1   12222 12578999999999975321  112222333


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHH
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +..+.+++.+||++|.|+++++..+.+.+.
T Consensus       136 ~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~  165 (173)
T d2a5ja1         136 REHGLIFMETSAKTACNVEEAFINTAKEIY  165 (173)
T ss_dssp             HHHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            345678999999999999999887766543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.6e-06  Score=67.20  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||+|++..
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999999983

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.8e-06  Score=67.83  Aligned_cols=25  Identities=40%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++|+++|.+|||||||||.+..
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHh
Confidence            4568999999999999999999983

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=1e-06  Score=71.96  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChh--hHHHHHHHH
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPT--QFKEWITFF   99 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~--~~~~~~~~~   99 (298)
                      |..++.++........+..+|++|+|+|+..+.+....     .+... .....|+++|.||+|+.+..  ..+......
T Consensus        60 ~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~  138 (194)
T d2bcgy1          60 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA  138 (194)
T ss_dssp             ECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred             EECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh
Confidence            55433344433445678999999999999764322221     11222 23578999999999997542  123333334


Q ss_pred             HccCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          100 DQQNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       100 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ...+..++.+||+++.|++++++.+.+.+.+
T Consensus       139 ~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         139 DANKMPFLETSALDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             HHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hccCcceEEEecCcCccHHHHHHHHHHHHHH
Confidence            4566789999999999999999888766554

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-06  Score=70.27  Aligned_cols=101  Identities=13%  Similarity=0.022  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--HHHhcc---CCCCCCcEEEEEecCCCCChh-hHHHHHHHHHcc
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF--DQLRNH---HPFSSSRRILVLNKMDLASPT-QFKEWITFFDQQ  102 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~---l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~~~  102 (298)
                      ||+ .+........+..+|++++|+|..++.+...  ..+..+   ......|++++.||.|..... ..++..++.+..
T Consensus        64 ~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~  142 (177)
T d1x3sa1          64 AGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH  142 (177)
T ss_dssp             CSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT
T ss_pred             CCc-hhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHC
Confidence            444 3333334467899999999999876432211  112222   223468889999999986543 223444555566


Q ss_pred             CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          103 NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       103 ~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      +++++.+||++|.|++++++.+.+.+-+
T Consensus       143 ~~~~~e~Sa~tg~gv~e~f~~l~~~l~~  170 (177)
T d1x3sa1         143 SMLFIEASAKTCDGVQCAFEELVEKIIQ  170 (177)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            7889999999999999999888765543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.05  E-value=2.1e-06  Score=70.81  Aligned_cols=28  Identities=18%  Similarity=0.317  Sum_probs=24.4

Q ss_pred             CCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          137 DASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       137 ~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...++.++|+++|..++|||||+|+|++
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            3446779999999999999999999984

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-06  Score=68.69  Aligned_cols=102  Identities=13%  Similarity=0.016  Sum_probs=63.5

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HH---hccCCCCCCcEEEEEecCCCCChhh--HHHHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QL---RNHHPFSSSRRILVLNKMDLASPTQ--FKEWITF   98 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l---~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~   98 (298)
                      -|..+...+........+..+|++++|+|...+.+....  .+   ... .....|+++|.||+|+.....  .++....
T Consensus        60 i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~d~~~~~~v~~~~~~~~  138 (170)
T d2g6ba1          60 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKL  138 (170)
T ss_dssp             EEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhc-cCCCceEEEEEeeechhhcccccHHHHHHH
Confidence            354444355555555678999999999998765332211  11   122 135689999999999875422  2223333


Q ss_pred             HHccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           99 FDQQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        99 ~~~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                      .+..+.+++.+||+++.|++++++.|.+.+
T Consensus       139 ~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         139 AKEYGLPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHHHHHc
Confidence            344577899999999999999998887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.7e-06  Score=66.56  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|+++.
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999983

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=4e-06  Score=66.39  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|.|..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999983

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.8e-06  Score=67.29  Aligned_cols=22  Identities=41%  Similarity=0.529  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||||+|+.
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999983

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.01  E-value=2.8e-06  Score=67.52  Aligned_cols=61  Identities=26%  Similarity=0.356  Sum_probs=35.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEccCCCEEEEeCCCCCCCC
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~~~~~~liDTPGi~~~~  214 (298)
                      ++..+|+++|.||||||||+|+|.+           +....+.+..+.+..  .+... .......|++|.....
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~-----------~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~   71 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD-----------DRLGQHVPTLHPTSE--ELTIA-GMTFTTFDLGGHIQAR   71 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC-----------C------CCCCCSCE--EEEET-TEEEEEEEECC----C
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC-----------CCCcceeccccccee--EEEec-ccccccccccchhhhh
Confidence            5678999999999999999999983           233333344444432  22222 2246778888876643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=4.4e-06  Score=66.32  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGIL  211 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~  211 (298)
                      .++|+++|.+|||||||++.|..          ..-.....+..+.+.......... .-.+.++||||-.
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~----------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~   66 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVK----------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE   66 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh----------CCCCcccccccccccccceeeccceEEEEEeccCCCch
Confidence            46899999999999999999983          111112233334333222222211 1147889999954

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=3.7e-06  Score=67.06  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||||++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5899999999999999999983

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.4e-06  Score=68.16  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|++.
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEEECCCCcCHHHHHHHHH
Confidence            589999999999999999997

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=8.1e-06  Score=65.60  Aligned_cols=91  Identities=16%  Similarity=0.115  Sum_probs=60.3

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccc-----HHHhccCC---CCCCcEEEEEecCCCCChhhH-HHHHHHHH-ccCCCEEE
Q 022351           39 IADRMPLVDIILEVRDARIPFSSEF-----DQLRNHHP---FSSSRRILVLNKMDLASPTQF-KEWITFFD-QQNCPSFG  108 (298)
Q Consensus        39 i~~~l~~aDlVl~VvDa~~p~~~~~-----~~l~~~l~---~~~k~~IiVlNK~DL~~~~~~-~~~~~~~~-~~~~~vi~  108 (298)
                      ....+..+|.+++++|..++.+...     +.+.....   ..+.|+++|.||+||...... +...++.. ..+.+++.
T Consensus        68 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e  147 (184)
T d1vg8a_          68 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFE  147 (184)
T ss_dssp             CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred             ccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEE
Confidence            3466889999999999976432211     11222111   135799999999998754322 22333332 34678999


Q ss_pred             EecCCCcCHHHHHHHHHHHHH
Q 022351          109 VNSHNKDNVKEFLKFLQAHVR  129 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~  129 (298)
                      +||+++.|++++++.+.+.+-
T Consensus       148 ~Sak~~~gI~e~f~~l~~~i~  168 (184)
T d1vg8a_         148 TSAKEAINVEQAFQTIARNAL  168 (184)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999988766543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.2e-06  Score=64.84  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.+|||||||++.+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999983

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.5e-06  Score=70.09  Aligned_cols=103  Identities=16%  Similarity=0.076  Sum_probs=64.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhhHH--------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQFK--------   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~~~--------   93 (298)
                      -|..+............+..+|.+++|+|+.++.+..+.  .+...+  ...+.|+++|.||+|+.......        
T Consensus        57 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~  136 (183)
T d1mh1a_          57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL  136 (183)
T ss_dssp             EECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred             eecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccc
Confidence            455554444444445678999999999999865332111  011111  12468999999999986543211        


Q ss_pred             ------HHHHHHHccC-CCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           94 ------EWITFFDQQN-CPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        94 ------~~~~~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                            +...+.+..+ .+++.+||+++.|+++++..+.+.+
T Consensus       137 ~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         137 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence                  1112222233 4688899999999999988776543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.2e-06  Score=65.02  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||+|++..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999983

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7.2e-06  Score=64.97  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.+|||||||+|+++
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~   23 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFV   23 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999998

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.9e-06  Score=68.23  Aligned_cols=104  Identities=17%  Similarity=0.108  Sum_probs=68.7

Q ss_pred             cchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-H---hccCCCCCCcEEEEEecCCCCChhh-HHHHHHHHHc
Q 022351           27 WYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-L---RNHHPFSSSRRILVLNKMDLASPTQ-FKEWITFFDQ  101 (298)
Q Consensus        27 wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-l---~~~l~~~~k~~IiVlNK~DL~~~~~-~~~~~~~~~~  101 (298)
                      |..+.+.+........+..+|.+++|+|..++.+..+.. +   .........+++++.||.|+.+... .+...++...
T Consensus        56 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~  135 (166)
T d1g16a_          56 WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKE  135 (166)
T ss_dssp             ECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHh
Confidence            554333444344456789999999999998764322211 1   1111235678899999999875432 2222333334


Q ss_pred             cCCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          102 QNCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       102 ~~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+.+++.+||+++.|++++++.|.+.+.+
T Consensus       136 ~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         136 LGIPFIESSAKNDDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             HTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCCHHHHHHHHHHHHHh
Confidence            57899999999999999999998877654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.92  E-value=7.9e-06  Score=64.83  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.+|+++|.+|||||||+|++..
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999999983

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.9e-06  Score=65.93  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.++|+++|.+|||||||+|+++.
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHh
Confidence            568999999999999999999983

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3.2e-06  Score=68.64  Aligned_cols=103  Identities=12%  Similarity=0.016  Sum_probs=64.7

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhhH---------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQF---------   92 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~~---------   92 (298)
                      -|..+...+........+..+|++++|+|..++.+..+.  .+...+  ...+.|+++|.||+||.+....         
T Consensus        55 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~  134 (191)
T d2ngra_          55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ  134 (191)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred             ccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhccc
Confidence            355444454444455678999999999999875322111  111111  1257899999999998643211         


Q ss_pred             -----HHHHHHHHc-cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           93 -----KEWITFFDQ-QNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        93 -----~~~~~~~~~-~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                           ++..++..+ .+..++.+||+++.|++++++.+...+
T Consensus       135 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             CCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence                 111112222 245789999999999999988776554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=7.8e-06  Score=64.88  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||||++..
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            347999999999999999999983

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.3e-06  Score=64.42  Aligned_cols=24  Identities=29%  Similarity=0.492  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..+|+++|.+|||||||+|++..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            356999999999999999999973

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=6.8e-06  Score=66.06  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++.++|+++|.+|||||||+|.++.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999983

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.6e-06  Score=67.06  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=60.2

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChh-hHHHHHHHHH-ccC-CCEEEEecCCCcCHH
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPT-QFKEWITFFD-QQN-CPSFGVNSHNKDNVK  118 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~-~~~~~~~~~~-~~~-~~vi~iSa~~~~gi~  118 (298)
                      ....+|+++++.|+........ .+...+.....|.++|+||+|+.... ......+.+. ..+ .+++++||+++.|++
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~  160 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPDDE-MVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD  160 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHHHH-HHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             chhhcceeEEEEecCccchhHH-HHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence            3567899999999875433333 23322334678899999999987653 3333333332 333 479999999999999


Q ss_pred             HHHHHHHHHHHh
Q 022351          119 EFLKFLQAHVRN  130 (298)
Q Consensus       119 ~L~~~l~~~i~~  130 (298)
                      +|++.|.+.+++
T Consensus       161 ~L~~~i~~~lpe  172 (179)
T d1egaa1         161 TIAAIVRKHLPE  172 (179)
T ss_dssp             HHHHHHHTTCCB
T ss_pred             HHHHHHHHhCCC
Confidence            999999876644

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=1.2e-05  Score=63.18  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEEcc-CCCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKIAS-HPNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~~~-~~~~~liDTPGi~~  212 (298)
                      .++|+++|.+|||||||+|.+..          +.-.....+.++.+.....+.+.. ...+.++|++|...
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA----------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER   63 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH----------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh----------CCCCCccCcccccccceeeeeeeccceEEEEEeccCchh
Confidence            36899999999999999999983          111122223333333333332322 22477899999543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5.8e-06  Score=66.57  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      -++|+++|.+|||||||+|+|.
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHh
Confidence            4789999999999999999998

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=7.7e-06  Score=64.86  Aligned_cols=91  Identities=22%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccH-HH----hccCCCCCCcEEEEEecCCCCChhh--HHHHHHHHHccCCCEEEEecC
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFD-QL----RNHHPFSSSRRILVLNKMDLASPTQ--FKEWITFFDQQNCPSFGVNSH  112 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~-~l----~~~l~~~~k~~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~  112 (298)
                      ...+..+|.+++|+|..++.+.... .+    .......+.|+++|.||+||.....  .++..++.++.+++++.+||+
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Sak  146 (168)
T d2atva1          67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC  146 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTT
T ss_pred             hhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccc
Confidence            3566789999999999876433221 11    1111235789999999999854311  223333334456788999999


Q ss_pred             CCcC-HHHHHHHHHHHHHh
Q 022351          113 NKDN-VKEFLKFLQAHVRN  130 (298)
Q Consensus       113 ~~~g-i~~L~~~l~~~i~~  130 (298)
                      ++.| +++++..+.+.+.+
T Consensus       147 tg~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         147 TGEGNITEIFYELCREVRR  165 (168)
T ss_dssp             TCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHHH
Confidence            9985 99988877765543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.3e-06  Score=65.78  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++|+++|.+|||||||+|.++.
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhh
Confidence            357999999999999999999983

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=1.9e-06  Score=68.54  Aligned_cols=100  Identities=16%  Similarity=0.079  Sum_probs=65.3

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH-----HhccCCCCCCcEEEEEecCCCCChh-----hHHHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQ-----LRNHHPFSSSRRILVLNKMDLASPT-----QFKEW   95 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~-----l~~~l~~~~k~~IiVlNK~DL~~~~-----~~~~~   95 (298)
                      -|..+.+.+........+..+|.+++|+|..++.+..+..     +... .....+.++|.||+|+.+..     ..++.
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~  134 (170)
T d1ek0a_          56 IWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEG  134 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred             ccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHH
Confidence            4554444444444456789999999999998754332211     1111 13568999999999985321     11223


Q ss_pred             HHHHHccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351           96 ITFFDQQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus        96 ~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                      .++.+..+++++.+||+++.|+++++..|.+
T Consensus       135 ~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~  165 (170)
T d1ek0a_         135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            3334445778999999999999999887754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.81  E-value=1.2e-05  Score=62.72  Aligned_cols=97  Identities=11%  Similarity=0.120  Sum_probs=65.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCcccHH--Hh---ccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-----ccC
Q 022351           34 AATRAIADRMPLVDIILEVRDARIPFSSEFDQ--LR---NHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-----QQN  103 (298)
Q Consensus        34 ~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~--l~---~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-----~~~  103 (298)
                      ............++.+++++|...........  +.   ........|++++.||.|+.......+......     ...
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~  140 (169)
T d1upta_          61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK  140 (169)
T ss_dssp             GGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC
T ss_pred             cccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCC
Confidence            34444556789999999999987654433211  11   111125688999999999986543333333321     234


Q ss_pred             CCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351          104 CPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       104 ~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .+++++||++|.|++++++.|.+.+.+
T Consensus       141 ~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         141 WQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            478999999999999999999887754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1e-05  Score=65.44  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||++.+..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999983

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=64.38  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.+|||||||+|.+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999983

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.80  E-value=1e-05  Score=67.64  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++.++++++|..++|||||+++|+.
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHH
Confidence            4568999999999999999999974

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.9e-05  Score=62.60  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.++|+++|.+|||||||+|.+..
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            467999999999999999999983

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=9.1e-06  Score=68.76  Aligned_cols=92  Identities=16%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CcccHHHhccCCCCCCc-EEEEEecCCCCChh--hHH--
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPF-------SSEFDQLRNHHPFSSSR-RILVLNKMDLASPT--QFK--   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-------~~~~~~l~~~l~~~~k~-~IiVlNK~DL~~~~--~~~--   93 (298)
                      ..-||| ..+...+...+..+|.+|+|+||..+.       ..+-.+...++...+.| +|+++||+|+.+.+  ...  
T Consensus        89 iDtPGH-~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~~  167 (239)
T d1f60a3          89 IDAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEI  167 (239)
T ss_dssp             EECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHH
T ss_pred             EECCCc-HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHHH
Confidence            455999 678999999999999999999997531       11211111111123555 67889999997532  222  


Q ss_pred             --HHHHHHHccC-----CCEEEEecCCCcCHH
Q 022351           94 --EWITFFDQQN-----CPSFGVNSHNKDNVK  118 (298)
Q Consensus        94 --~~~~~~~~~~-----~~vi~iSa~~~~gi~  118 (298)
                        +..+++...+     .+++++|+..+.|+-
T Consensus       168 ~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         168 VKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             HHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence              2223332222     367899999998754

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.72  E-value=9.1e-06  Score=69.00  Aligned_cols=95  Identities=19%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CcccHHHhccCCCCCC-cEEEEEecCCCCCh----hhHH
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPF-------SSEFDQLRNHHPFSSS-RRILVLNKMDLASP----TQFK   93 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~-------~~~~~~l~~~l~~~~k-~~IiVlNK~DL~~~----~~~~   93 (298)
                      ..-||| ..+...+...+..+|.+++|+|+..+.       ..+-.+...++...+. ++++++||+|+.+.    +..+
T Consensus       107 iDtPGH-~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~  185 (245)
T d1r5ba3         107 LDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYK  185 (245)
T ss_dssp             CCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHH
T ss_pred             eccccc-ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHH
Confidence            344899 668899999999999999999998642       1121222121112344 57799999999642    2233


Q ss_pred             HHHHHH----Hcc-C------CCEEEEecCCCcCHHHHH
Q 022351           94 EWITFF----DQQ-N------CPSFGVNSHNKDNVKEFL  121 (298)
Q Consensus        94 ~~~~~~----~~~-~------~~vi~iSa~~~~gi~~L~  121 (298)
                      +..+.+    .+. +      .+++++||++|+|+.+++
T Consensus       186 ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         186 ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            333222    211 2      368999999999987643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.8e-05  Score=62.44  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.+|||||||++.+..
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999983

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=9e-06  Score=65.29  Aligned_cols=103  Identities=13%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccH--HHhccC--CCCCCcEEEEEecCCCCChhh----------
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFD--QLRNHH--PFSSSRRILVLNKMDLASPTQ----------   91 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~--~l~~~l--~~~~k~~IiVlNK~DL~~~~~----------   91 (298)
                      -|..++...........+..+|++++|+|..++.+..+.  .+...+  ...+.|+++|.||+|+.....          
T Consensus        54 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~  133 (179)
T d1m7ba_          54 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQ  133 (179)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTC
T ss_pred             cccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhc
Confidence            444443343333344679999999999999865332211  111111  125789999999999853211          


Q ss_pred             ----HHHHHHHHHccC-CCEEEEecCCCc-CHHHHHHHHHHHH
Q 022351           92 ----FKEWITFFDQQN-CPSFGVNSHNKD-NVKEFLKFLQAHV  128 (298)
Q Consensus        92 ----~~~~~~~~~~~~-~~vi~iSa~~~~-gi~~L~~~l~~~i  128 (298)
                          .++.....++.+ ..++.+||+++. +++++++.+...+
T Consensus       134 ~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         134 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             CCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence                112222222333 357889999997 5999988776543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=5.9e-05  Score=57.98  Aligned_cols=92  Identities=21%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccH-----HHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH---------
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFD-----QLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD---------  100 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~-----~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~---------  100 (298)
                      ...........++.+++++|..++......     .........+.|++++.||.|+.......+..+.+.         
T Consensus        57 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~  136 (166)
T d2qtvb1          57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQR  136 (166)
T ss_dssp             GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---
T ss_pred             hhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHh
Confidence            344455778899999999998765332221     111222235789999999999865433333333331         


Q ss_pred             ---ccCCCEEEEecCCCcCHHHHHHHHHH
Q 022351          101 ---QQNCPSFGVNSHNKDNVKEFLKFLQA  126 (298)
Q Consensus       101 ---~~~~~vi~iSa~~~~gi~~L~~~l~~  126 (298)
                         ..+.+++.+||++|+|+++++++|.+
T Consensus       137 ~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         137 IEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             hcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence               11225789999999999999998853

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.62  E-value=3.3e-05  Score=64.40  Aligned_cols=91  Identities=20%  Similarity=0.196  Sum_probs=59.5

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------ccc-HH--HhccCCCCCCcEEEEEecCCCCChh----
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS-------SEF-DQ--LRNHHPFSSSRRILVLNKMDLASPT----   90 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~-------~~~-~~--l~~~l~~~~k~~IiVlNK~DL~~~~----   90 (298)
                      .-.-||| ..+...+...+.-+|..|+|+|+..+..       .+- +.  +...  ....++|+++||+|+..++    
T Consensus        85 iiDtPGH-~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~--~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          85 IIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             ECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSSSTTCHH
T ss_pred             EeeCCCc-HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH--hCCCceEEEEEcccCCCccccHH
Confidence            3566999 7899999999999999999999987521       111 11  2222  2345788899999997532    


Q ss_pred             hHHH----HHHHHHcc-----CCCEEEEecCCCcCHH
Q 022351           91 QFKE----WITFFDQQ-----NCPSFGVNSHNKDNVK  118 (298)
Q Consensus        91 ~~~~----~~~~~~~~-----~~~vi~iSa~~~~gi~  118 (298)
                      ..+.    ..+++...     ..+++++||..+.|+.
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            1221    11222222     2357899999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=3.1e-05  Score=61.45  Aligned_cols=22  Identities=45%  Similarity=0.581  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      -.+|+++|.+|||||||+|.+.
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            3689999999999999999997

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.60  E-value=2.2e-05  Score=67.69  Aligned_cols=70  Identities=17%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh-hcchhhhhcCCccceeec------CCCCeeeeeEEEE-EccCCCEEEEeCCCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQ-IGRITAAEKGKLRHATVS------PQPGETKDIYSLK-IASHPNIYVLDTPGILPPE  214 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~-~~~~~~~~~~~~~~~~~~------~~pg~T~~~~~~~-~~~~~~~~liDTPGi~~~~  214 (298)
                      +|+++|..++|||||+.+|+- .+.+...... ...++++      ..-|.|....... .+.+..+.|+||||..+.-
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v-~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccce-ecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            799999999999999999973 2222111000 0111111      1113333332222 2344579999999988754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.56  E-value=7.7e-05  Score=61.74  Aligned_cols=85  Identities=13%  Similarity=0.125  Sum_probs=55.9

Q ss_pred             CCCCeEEEEEeCCCCCCcccHH---Hhcc--CCCCCCcEEEEEecCCCCChhhHHHHHHHH-------------------
Q 022351           44 PLVDIILEVRDARIPFSSEFDQ---LRNH--HPFSSSRRILVLNKMDLASPTQFKEWITFF-------------------   99 (298)
Q Consensus        44 ~~aDlVl~VvDa~~p~~~~~~~---l~~~--l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~-------------------   99 (298)
                      ...+.++.|+|+..........   +...  ......|.++|+||+|+.+.+....+....                   
T Consensus       122 ~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (244)
T d1yrba1         122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGL  201 (244)
T ss_dssp             SSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHH
T ss_pred             ccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4567899999987544433211   1110  011367899999999999875443322111                   


Q ss_pred             ---------H--ccCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351          100 ---------D--QQNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus       100 ---------~--~~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                               .  ....+++++||++++|+++|+.+|.+.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         202 MAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence                     0  1234789999999999999999998754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=4.2e-05  Score=61.19  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.+|||||||++.++.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999999983

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.48  E-value=6.5e-05  Score=64.36  Aligned_cols=67  Identities=24%  Similarity=0.295  Sum_probs=38.4

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh-cchhhhhcCC-ccceeecC------CCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          144 TVMLLGIPNVGKSALANSLHQI-GRITAAEKGK-LRHATVSP------QPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~-~~~~~~~~~~-~~~~~~~~------~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      +|+++|..++|||||+.+|+.. +.+...  |. ....++.+      .-|.|.......+ +.+..+.+|||||...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~--g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d   79 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERR--GRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSC--CCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhh--ccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh
Confidence            6999999999999999999742 222110  00 00111111      1233433332222 2344699999999866

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.42  E-value=4.9e-05  Score=59.93  Aligned_cols=93  Identities=13%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccHH--Hh---ccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHc--------
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFDQ--LR---NHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQ--------  101 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~--l~---~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~--------  101 (298)
                      ............+.+++++|..++.......  +.   ......+.|.+++.||.|+..........+.+..        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~  149 (186)
T d1f6ba_          70 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKG  149 (186)
T ss_dssp             -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSS
T ss_pred             hhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhh
Confidence            3344457788999999999987653322211  11   1111257999999999998654333333333321        


Q ss_pred             ---------cCCCEEEEecCCCcCHHHHHHHHHHH
Q 022351          102 ---------QNCPSFGVNSHNKDNVKEFLKFLQAH  127 (298)
Q Consensus       102 ---------~~~~vi~iSa~~~~gi~~L~~~l~~~  127 (298)
                               .+++++.+||++|+|+++++++|.++
T Consensus       150 ~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         150 SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence                     11247889999999999999998754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00011  Score=59.00  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+++|.+|||||||++.+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4789999999999999999994

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0001  Score=63.44  Aligned_cols=66  Identities=26%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeec-CCCCeeeeeEEE--EEcc--CCCEEEEeCCCCCCCCC
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVS-PQPGETKDIYSL--KIAS--HPNIYVLDTPGILPPEI  215 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~-~~pg~T~~~~~~--~~~~--~~~~~liDTPGi~~~~~  215 (298)
                      +-.-|.++|...+|||+|+|.|++..          ..-.++ ..-.+|+.+...  ++..  ...+.++||.|+..+..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~----------~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~  100 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK----------KGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEK  100 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS----------SCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC----------CCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccccc
Confidence            34578999999999999999999522          111111 122346665422  2222  22488999999988654


Q ss_pred             C
Q 022351          216 H  216 (298)
Q Consensus       216 ~  216 (298)
                      .
T Consensus       101 ~  101 (277)
T d1f5na2         101 G  101 (277)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.00012  Score=58.17  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+++|..|||||||++.+.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~   23 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999987

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00015  Score=64.18  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +|+++|..+.|||||+.+|+.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            599999999999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=7.9e-05  Score=62.77  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++.++|+++|..++|||||+-+|+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHH
Confidence            345899999999999999999986

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.19  E-value=6.8e-05  Score=62.38  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      +.++|+++|..+.|||||+-+|+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccEEEEEecCCCCHHHHHHHHH
Confidence            45799999999999999999986

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00033  Score=55.65  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=54.5

Q ss_pred             hcCCCCeEEEEEeCCCCCCccc-HHHh----ccC--CCCCCcEEEEEecCCCCChhh----HHHHHHHHHc-cCCCEEEE
Q 022351           42 RMPLVDIILEVRDARIPFSSEF-DQLR----NHH--PFSSSRRILVLNKMDLASPTQ----FKEWITFFDQ-QNCPSFGV  109 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~-~~l~----~~l--~~~~k~~IiVlNK~DL~~~~~----~~~~~~~~~~-~~~~vi~i  109 (298)
                      ++..+|++|+|+|..++.+..+ ..+.    .+.  .....|+++|.||.|+.....    .++...+..+ .+..++.+
T Consensus        67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~  146 (175)
T d2bmja1          67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYET  146 (175)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEE
T ss_pred             cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEe
Confidence            4556999999999986532221 1111    111  124568999999999743211    1122222222 34578899


Q ss_pred             ecCCCcCHHHHHHHHHHHHHh
Q 022351          110 NSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       110 Sa~~~~gi~~L~~~l~~~i~~  130 (298)
                      ||+++.|+++++..+.+.+-.
T Consensus       147 SAk~~~~v~~~F~~l~~~i~~  167 (175)
T d2bmja1         147 CATYGLNVDRVFQEVAQKVVT  167 (175)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHHHH
Confidence            999999999988877655443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=8.9e-05  Score=63.76  Aligned_cols=60  Identities=20%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP   89 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~   89 (298)
                      ||| ..+...+...+.-+|..|+|+|+..+....-..+.+.+...+.|+++++||+|....
T Consensus        79 PG~-~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          79 PGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             CSS-SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTC
T ss_pred             Cch-hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccccc
Confidence            566 445555566667799999999999988877766655555679999999999998644

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00015  Score=63.87  Aligned_cols=26  Identities=23%  Similarity=0.446  Sum_probs=23.3

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+..+|++.|.||||||||+|+|.+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            35688999999999999999999973

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.04  E-value=0.00014  Score=62.22  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=48.7

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      -||| ..+...+...+.-+|.+|+|+|+..+.......+.+.+...+.|+++++||+|..
T Consensus        74 tPGh-~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          74 APGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             CCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             cCch-hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence            3888 5677888888889999999999999888777666555555789999999999973

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00044  Score=55.04  Aligned_cols=55  Identities=20%  Similarity=0.319  Sum_probs=35.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhhcchhhhhcCCccceeecCCCCeeeeeEEEEE-ccCCCEEEEeCCCCCC
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQIGRITAAEKGKLRHATVSPQPGETKDIYSLKI-ASHPNIYVLDTPGILP  212 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~~~~~~~~~~~~~~~~~~~~pg~T~~~~~~~~-~~~~~~~liDTPGi~~  212 (298)
                      .++|+++|.+|||||||++.+..           +.. .  ..|  |.......+ ...-.+.++||+|-..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~-----------~~~-~--~~p--TiG~~~~~~~~~~~~~~~~d~~g~~~   57 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRI-----------IHG-S--GVP--TTGIIEYPFDLQSVIFRMVDVGGQRS   57 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH-----------HTS-S--CCC--CCSCEEEEEECSSCEEEEEECCCSTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC-----------CCC-C--CCc--eeeEEEEEEeccceeeeecccccccc
Confidence            46899999999999999999973           111 1  122  222222222 1233588999999754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00045  Score=55.90  Aligned_cols=61  Identities=15%  Similarity=0.017  Sum_probs=38.4

Q ss_pred             chhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc---HHHhcc-----CCCCCCcEEEEEecCCCCC
Q 022351           28 YGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF---DQLRNH-----HPFSSSRRILVLNKMDLAS   88 (298)
Q Consensus        28 fpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~---~~l~~~-----l~~~~k~~IiVlNK~DL~~   88 (298)
                      ++|+.......+...+..+|.+++|+|+.+......   ..+..+     ......|++||+||+|+..
T Consensus        54 ~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          54 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             ccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            345533334556678899999999999976422111   112221     1124578899999999975

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.91  E-value=0.0002  Score=60.39  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++.++|+++|..++|||||+.+|+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHH
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHH
Confidence            456789999999999999999996

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.71  E-value=0.0004  Score=54.42  Aligned_cols=22  Identities=27%  Similarity=0.659  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.||+|||||++.|.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            3799999999999999999985

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00048  Score=53.28  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -++|+|.||+|||||+|.|.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            579999999999999999973

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.60  E-value=0.00082  Score=55.21  Aligned_cols=21  Identities=24%  Similarity=0.526  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -|+|+|++|+|||||+++|++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999984

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.59  E-value=0.00073  Score=55.60  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+|+++|.+|||||||++.+.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999996

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00068  Score=54.09  Aligned_cols=104  Identities=14%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc------c------HHHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSE------F------DQLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~------~------~~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .-|..++..............++.+++++|........      +      ..+..++.   ..+.|+++++||+|+...
T Consensus        47 ~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  126 (200)
T d1zcba2          47 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE  126 (200)
T ss_dssp             EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             eeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhh
Confidence            46777777777777778899999999999987643221      1      01112221   257899999999997532


Q ss_pred             ------------------hhHHH----HHHHHHcc-------CCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           90 ------------------TQFKE----WITFFDQQ-------NCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        90 ------------------~~~~~----~~~~~~~~-------~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                                        .....    ..+.+...       .+.++.+||+++.+++.+.+.+.+.+
T Consensus       127 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         127 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence                              11122    22223211       12356789999999999999887755

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.006  Score=53.20  Aligned_cols=84  Identities=14%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             hcCCCCeEEEEEeCCCCC--CcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHH-------c----cCCCEEE
Q 022351           42 RMPLVDIILEVRDARIPF--SSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFD-------Q----QNCPSFG  108 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~--~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~-------~----~~~~vi~  108 (298)
                      ....+|.+++|+++....  .....-+.+.      +=++|+||+|+............+.       .    ...+++.
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~  237 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT  237 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHHH------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhcc------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEE
Confidence            346678888888653221  1111222222      3388999999987554332222221       1    1126899


Q ss_pred             EecCCCcCHHHHHHHHHHHHHhh
Q 022351          109 VNSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus       109 iSa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      +||.+++|+++|.+.|.++...+
T Consensus       238 ~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         238 CSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             EEeeCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998876653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.50  E-value=0.00073  Score=59.18  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=23.2

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .....+|++.|.||+||||||++|..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            35678999999999999999999973

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.50  E-value=0.00081  Score=52.20  Aligned_cols=25  Identities=20%  Similarity=0.583  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +++++|++.|.||+||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            5678999999999999999999963

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.42  E-value=0.00065  Score=52.91  Aligned_cols=23  Identities=43%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+|+|+|.||+|||||.++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999973

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.31  E-value=0.0013  Score=50.87  Aligned_cols=24  Identities=38%  Similarity=0.585  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+..|.++|.||+||||+-..|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            568899999999999999999996

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0002  Score=63.36  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCC
Q 022351           29 GPHMAAATRAIADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLA   87 (298)
Q Consensus        29 pghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~   87 (298)
                      ||| ..+..++...+.-+|.+++|+|+..+.......+.+.....+.|+++++||+|..
T Consensus       104 PGh-~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         104 PGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             CCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CCc-HHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            666 4455556666677999999999999888777666555445789999999999953

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.30  E-value=0.003  Score=49.67  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..++-|+|.|.+|+|||||.+.|.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            457789999999999999999996

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0011  Score=53.01  Aligned_cols=22  Identities=23%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-|+++|.||+||||+.+.|.+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999973

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.05  E-value=0.016  Score=50.17  Aligned_cols=56  Identities=11%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             cEEEEEecCCCCChhhHHH-----HHHHHHc-------cCCCEEEEecCCCcCHHHHHHHHHHHHHhh
Q 022351           76 RRILVLNKMDLASPTQFKE-----WITFFDQ-------QNCPSFGVNSHNKDNVKEFLKFLQAHVRNL  131 (298)
Q Consensus        76 ~~IiVlNK~DL~~~~~~~~-----~~~~~~~-------~~~~vi~iSa~~~~gi~~L~~~l~~~i~~~  131 (298)
                      .=++|+||+|+.+......     +...+..       ...+++.+||.++.|+++|.+.|.++....
T Consensus       191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            3489999999876543322     2222210       123799999999999999999998887654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0018  Score=51.49  Aligned_cols=21  Identities=38%  Similarity=0.638  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -|+++|++|+||+||++.|++
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.01  E-value=0.0016  Score=50.64  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+|.+|+|||||++.|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999973

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.002  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-++++|+|||||+||+|.|+.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.0017  Score=51.31  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-|+++|.||||||||++.|.+
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0024  Score=57.39  Aligned_cols=87  Identities=13%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             hcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCCh------------h-hHHHH----HHHHHccCC
Q 022351           42 RMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASP------------T-QFKEW----ITFFDQQNC  104 (298)
Q Consensus        42 ~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~------------~-~~~~~----~~~~~~~~~  104 (298)
                      .+..+|++|++.|.+  +...+..+...+...++|+++|+||+|....            + .++.+    .+.+...+.
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcceEEEEecCCC--CCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            477899999998865  4555556666555578999999999996311            1 12222    222333333


Q ss_pred             ---CEEEEecCC--CcCHHHHHHHHHHHHHh
Q 022351          105 ---PSFGVNSHN--KDNVKEFLKFLQAHVRN  130 (298)
Q Consensus       105 ---~vi~iSa~~--~~gi~~L~~~l~~~i~~  130 (298)
                         +++.+|+..  ..++.+|.+.+.+.+++
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence               678888754  45889999888776544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.89  E-value=0.0017  Score=50.02  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+|+++|.||+||||+.+.|.+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999963

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.83  E-value=0.0022  Score=48.64  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -|+++|.||+|||||.+.|..
T Consensus         4 lIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0025  Score=53.23  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3458999999999999999999853

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.71  E-value=0.003  Score=52.83  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++-.++++|.+|+|||||++.|.+.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.63  E-value=0.003  Score=53.18  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            4458999999999999999999854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.62  E-value=0.0034  Score=49.76  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++|+++|.||+||||+...|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            56899999999999999999986

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.00037  Score=55.46  Aligned_cols=106  Identities=16%  Similarity=0.032  Sum_probs=67.5

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc------cc------HHHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           25 GGWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSS------EF------DQLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        25 ~~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~------~~------~~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      ..|..+...............++.+++++|..+....      ..      ..+...+.   ..+.|++++.||+|+...
T Consensus        48 ~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~  127 (200)
T d2bcjq2          48 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE  127 (200)
T ss_dssp             EEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHH
T ss_pred             eeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhh
Confidence            3677777666777777889999999999998754211      00      11222221   257899999999997421


Q ss_pred             h------------------hHHHHHH----HHHcc------CCCEEEEecCCCcCHHHHHHHHHHHHHh
Q 022351           90 T------------------QFKEWIT----FFDQQ------NCPSFGVNSHNKDNVKEFLKFLQAHVRN  130 (298)
Q Consensus        90 ~------------------~~~~~~~----~~~~~------~~~vi~iSa~~~~gi~~L~~~l~~~i~~  130 (298)
                      .                  ......+    .+...      .+.++.+||+++++++++.+.+.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         128 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            1                  0111111    22111      1235778999999999999999877643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0036  Score=52.62  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcc
Confidence            4558999999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.46  E-value=0.0034  Score=49.74  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+++|+++|.||+||||+...|.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999985

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.0021  Score=50.56  Aligned_cols=103  Identities=14%  Similarity=0.044  Sum_probs=65.4

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------------HHHhccCC---CCCCcEEEEEecCCCCChh
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFSSEF------------DQLRNHHP---FSSSRRILVLNKMDLASPT   90 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~~~~------------~~l~~~l~---~~~k~~IiVlNK~DL~~~~   90 (298)
                      -|..+...+.......+...++.+++|+|..+......            ..+...+.   ....|++++.||+|+....
T Consensus        46 i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~  125 (195)
T d1svsa1          46 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK  125 (195)
T ss_dssp             EEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             eeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhh
Confidence            57777777777777789999999999999865422110            01111111   2468999999999963210


Q ss_pred             -----------------hHHHHH----HHHHc-------cCCCEEEEecCCCcCHHHHHHHHHHHH
Q 022351           91 -----------------QFKEWI----TFFDQ-------QNCPSFGVNSHNKDNVKEFLKFLQAHV  128 (298)
Q Consensus        91 -----------------~~~~~~----~~~~~-------~~~~vi~iSa~~~~gi~~L~~~l~~~i  128 (298)
                                       ......    ..+..       ..+.++.+||+++++++++++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         126 IKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             TTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence                             111111    11211       122456789999999999999887765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.41  E-value=0.0036  Score=47.90  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -|++.|.||+||||+.+.|.+
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.40  E-value=0.005  Score=48.81  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++..|+++|.||+||||+...|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999999863

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.0033  Score=49.97  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+++|.|||||+||++.|++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.35  E-value=0.0042  Score=48.52  Aligned_cols=21  Identities=29%  Similarity=0.686  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.||+||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999885

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.35  E-value=0.0038  Score=48.40  Aligned_cols=20  Identities=25%  Similarity=0.509  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      -|+|.|.||+||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999995

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0045  Score=52.85  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++-.++++|.+|+|||||++.|.+
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            445899999999999999999985

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.015  Score=46.17  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=37.3

Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCcccH---HH------hccCCCCCCcEEEEEecCCCCChh
Q 022351           35 ATRAIADRMPLVDIILEVRDARIPFSSEFD---QL------RNHHPFSSSRRILVLNKMDLASPT   90 (298)
Q Consensus        35 ~~~~i~~~l~~aDlVl~VvDa~~p~~~~~~---~l------~~~l~~~~k~~IiVlNK~DL~~~~   90 (298)
                      ..+........++.++.++|+.........   .+      .......++|+++|+||+|+.+..
T Consensus        63 ~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            445556678888999999998764333221   11      112223689999999999997644

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.003  Score=49.68  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+..|.++|.||+||||+-+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999996

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0061  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+.-|+++|.||+||||+...|+.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566889999999999999999863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.20  E-value=0.004  Score=48.24  Aligned_cols=20  Identities=35%  Similarity=0.720  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|+|||||||+-..|.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999985

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.0048  Score=49.22  Aligned_cols=20  Identities=45%  Similarity=0.579  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      |+++|.|||||+||.+.|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.11  E-value=0.0043  Score=52.21  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhc
Confidence            4558999999999999999999853

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0064  Score=50.36  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||+|.|.+.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3447899999999999999999854

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0054  Score=46.26  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      .|+++|.||+||||+-..|.
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999996

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.05  E-value=0.014  Score=47.80  Aligned_cols=41  Identities=24%  Similarity=0.375  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++.+.++|...+..       ....+..+++.|.||+|||++++.|.+
T Consensus        25 i~~l~~~l~~~l~~-------~~~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          25 LQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             HHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-------CCCCCCceEEECCCCCCHHHHHHHHHH
Confidence            56666666655432       113445799999999999999999873

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.04  E-value=0.0065  Score=50.28  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+-.++++|.+|+|||||++.|.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            344789999999999999999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.03  E-value=0.0053  Score=49.65  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||++.|.+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            44789999999999999999985

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.95  E-value=0.0064  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.715  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.||+||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998863

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.93  E-value=0.0076  Score=47.97  Aligned_cols=25  Identities=16%  Similarity=0.498  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHhh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|+++|.||+||||+-..|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999963

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.91  E-value=0.0081  Score=47.53  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             CCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          138 ASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       138 ~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+++-|+|-|..||||||+++.|.+
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            446788999999999999999999973

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.90  E-value=0.0078  Score=50.06  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            3447899999999999999999863

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.86  E-value=0.006  Score=47.17  Aligned_cols=20  Identities=35%  Similarity=0.637  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      +|+++|+||+||||+-..|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999985

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0068  Score=46.67  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .|.+.|.||+|||||+..+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999974

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.016  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+.+.|.||+||||+.+++.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999974

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.75  E-value=0.0067  Score=47.16  Aligned_cols=19  Identities=37%  Similarity=0.651  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchHHHHHHHh
Q 022351          145 VMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~  163 (298)
                      |+|.|.|||||||+++.|.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4678999999999999995

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.71  E-value=0.0087  Score=49.72  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||+|.|.+.
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999999853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.71  E-value=0.008  Score=47.03  Aligned_cols=22  Identities=41%  Similarity=0.638  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++|+++|.||+||||+...|.+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.67  E-value=0.0069  Score=50.04  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3447899999999999999999853

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.0087  Score=46.73  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHh
Q 022351          143 VTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++|+++|.||+||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999885

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.57  E-value=0.0096  Score=45.71  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      --|++.|.||+||||+.+.|.+
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999963

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0098  Score=49.45  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||++.|.+.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            447899999999999999999853

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.01  Score=46.46  Aligned_cols=23  Identities=30%  Similarity=0.653  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+++|.||+||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999963

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.52  E-value=0.0098  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||+|.|.+.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            447899999999999999999853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0075  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+-.++++|.+|+|||||+|.|.+
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            345789999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.50  E-value=0.0089  Score=45.77  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -|++.|.||+||||+.+.|.+
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999974

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.44  E-value=0.018  Score=49.99  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+++..++...+..           +.+++|+|.+|+|||||+|+|+.
T Consensus       152 ~~~~~~~l~~~v~~-----------~~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         152 KEQAISAIKDGIAI-----------GKNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             HHHHHHHHHHHHHH-----------TCCEEEEESTTSSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHh-----------CCCEEEEeeccccchHHHHHHhh
Confidence            34556666655544           23689999999999999999984

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.42  E-value=0.022  Score=46.13  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..+.|...+..         .....+++.|.||+||||++..|.+
T Consensus        30 ~~~~~~l~~~i~~---------~~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          30 EHIVKRLKHYVKT---------GSMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHHHHHHHHHHHH---------TCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---------CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4555666666554         2223689999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.39  E-value=0.012  Score=48.98  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      +-.++++|.+|+|||||++.|.+.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcC
Confidence            447899999999999999999853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.38  E-value=0.013  Score=47.46  Aligned_cols=24  Identities=38%  Similarity=0.526  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+..|.+.|.||+|||||-+.|.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            567899999999999999999996

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.015  Score=44.48  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +--++++|.||+||||+.+.|.+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999963

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.36  E-value=0.01  Score=49.35  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .++++|.+|+|||||++.|.+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5679999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.35  E-value=0.0094  Score=46.26  Aligned_cols=20  Identities=15%  Similarity=0.468  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      .|+++|.||+||||+-+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999995

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.34  E-value=0.012  Score=49.49  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      .+-.++++|.+|+|||||+++|.+.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            3457899999999999999999853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.21  E-value=0.037  Score=45.45  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.-|++.|.||+|||||..+|.+
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999963

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.11  E-value=0.0085  Score=49.90  Aligned_cols=25  Identities=16%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQI  165 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~~  165 (298)
                      ++-.++++|.+|+|||||++.|.+.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            3458899999999999999999853

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.015  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++.|+++|.||+||||....|.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999998885

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.015  Score=48.72  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-.++++|.+|+|||||+|.|.+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHC
Confidence            44689999999999999999985

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.86  E-value=0.0019  Score=51.70  Aligned_cols=117  Identities=13%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             HHhcCCCCeEEEEEeCCCCCCcccHHHhccCCCCCCcEEEEEecCCCCChhhHHHHHHHHHccCCCEEEEecCCCcCHHH
Q 022351           40 ADRMPLVDIILEVRDARIPFSSEFDQLRNHHPFSSSRRILVLNKMDLASPTQFKEWITFFDQQNCPSFGVNSHNKDNVKE  119 (298)
Q Consensus        40 ~~~l~~aDlVl~VvDa~~p~~~~~~~l~~~l~~~~k~~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~  119 (298)
                      ...+...+..+.++|+..+.......+.++....+.+.+++.++++.  +...+.-.... .... ...+++....+...
T Consensus        78 ~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~  153 (213)
T d1bifa1          78 RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD--PEVIAANIVQV-KLGS-PDYVNRDSDEATED  153 (213)
T ss_dssp             HHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC--HHHHHHHHHHH-TTTS-TTTTTSCHHHHHHH
T ss_pred             HHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH--HHHHHHhHHHH-hcCC-CcccccchHHHHHH
Confidence            33444455556688998665444444444433356788888888863  32222111111 1111 11233444455666


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHh
Q 022351          120 FLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       120 L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      +.+.+....+.....   .......+.++|.+|+|||+++|.+.
T Consensus       154 ~~~~l~~~~~~~e~~---~~~~~~~~~~I~~~n~g~~~lvn~i~  194 (213)
T d1bifa1         154 FMRRIECYENSYESL---DEEQDRDLSYIKIMDVGQSYVVNRVA  194 (213)
T ss_dssp             HHHHHHHHHTTCCCC---CTTTTTTSCEEEEETTTTEEEEECCC
T ss_pred             HHHhhhhcccccccc---CccccCCcCeEecCCCCceeeecccc
Confidence            666666555432111   11122345678999999999999886

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.019  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++-|++.|.+|+|||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999853

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.74  E-value=0.044  Score=45.34  Aligned_cols=47  Identities=30%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             cCHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          115 DNVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       115 ~gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..++.+++.....++....   ....+...|.+.|.||+|||++.++|.+
T Consensus        16 ~~i~~i~~~~~~~~~~~~~---~~~~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          16 DPVTRVLDDGELLVQQTKN---SDRTPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---CSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc---cCCCCCeEEEEECcCCCCHHHHHHHHhh
Confidence            3456666655544443221   1223456799999999999999999974

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.68  E-value=0.026  Score=45.86  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+.+.|.||+||||+.+.|..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3588999999999999999973

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.028  Score=47.33  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -++++||.||||||+++..|.+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            4889999999999999999974

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.032  Score=44.67  Aligned_cols=23  Identities=39%  Similarity=0.640  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-++++||.||||||+++..|.+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34789999999999999999974

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.40  E-value=0.028  Score=46.26  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCce-EEEEEcCCCCchHHHHHHHhh
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTV-TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~-~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++.|.+.+...+..-     ....... .+.+.|.||+|||++++++.+
T Consensus        25 ~~~l~~~l~~~~~~~-----~~~~~~~~~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          25 AEALARIYLNRLLSG-----AGLSDVNMIYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             HHHHHHHHHHHHHTS-----SCBCCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-----CCCCCcceEEEeECCCCCCHHHHHHHHHH
Confidence            566666665444321     0111222 344569999999999999974

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.16  E-value=0.028  Score=44.13  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++-|++.|.+|+||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.09  E-value=0.052  Score=43.61  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          116 NVKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       116 gi~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+-.++..+...+...        .+.-.+++.|.||+|||++.++|+.
T Consensus        35 ~~~~Fl~~l~~~l~~~--------PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          35 EFITFLGALKSFLKGT--------PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CHHHHHHHHHHHHHTC--------TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCC--------CCceEEEEECCCCccHHHHHHHHHH
Confidence            4556667776665431        2335889999999999999999974

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.02  E-value=0.087  Score=44.60  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHh
Q 022351          117 VKEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       117 i~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++-+++.+..+++...+   .....++-|++.|.+|+|||||-+.|.
T Consensus         5 ~~~~~~~~~~~~~~~~~---~~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_           5 LDYTIEFLDKYIPEWFE---TGNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             HHHHHHHHHHHHHHHHT---TTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHh---cCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34455566655554221   123457899999999999999987764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.84  E-value=0.029  Score=44.21  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|.++|.||+||||+...|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999963

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.051  Score=43.65  Aligned_cols=38  Identities=18%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +++.+.|...+..         .....+.+.|.||+||||++..|.+
T Consensus        20 ~~~~~~L~~~i~~---------~~~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          20 NEVITTVRKFVDE---------GKLPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             HHHHHHHHHHHHT---------TCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc---------CCCCeEEEECCCCCChhHHHHHHHH
Confidence            4555566655543         1222478999999999999999974

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.043  Score=43.17  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-.|+++|.||+||||+...|.+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999999964

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.059  Score=44.85  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..+.+.|.||+|||+++++|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34689999999999999999973

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.39  E-value=0.0087  Score=48.76  Aligned_cols=64  Identities=17%  Similarity=0.049  Sum_probs=41.0

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------ccc------HHHhccCC---CCCCcEEEEEecCCCCCh
Q 022351           26 GWYGPHMAAATRAIADRMPLVDIILEVRDARIPFS------SEF------DQLRNHHP---FSSSRRILVLNKMDLASP   89 (298)
Q Consensus        26 ~wfpghm~~~~~~i~~~l~~aDlVl~VvDa~~p~~------~~~------~~l~~~l~---~~~k~~IiVlNK~DL~~~   89 (298)
                      .|..|.............+.++.+++|+|......      ..+      ..+..++.   ..+.|++|++||+||...
T Consensus        51 ~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          51 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             EEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             EEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            55555555555566678999999999999864211      111      11222222   147899999999998643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.068  Score=45.81  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             CCCceEEEEEcCCCCchHHHHHHHh
Q 022351          139 SSDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       139 ~~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+.++-|+|.|.+++||||+.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3567999999999999999988884

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.33  E-value=0.06  Score=43.25  Aligned_cols=21  Identities=24%  Similarity=0.640  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.+.|.||+||||+.+.|.+
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            478999999999999988863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.13  Score=41.68  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..+++.|.||+||||++.+|.+
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.61  E-value=0.09  Score=43.38  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-+++.|.||+|||+|.++|.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4589999999999999999973

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.49  E-value=0.051  Score=42.91  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -|+|-|..|+||||++..|.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999973

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.14  E-value=0.051  Score=44.27  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+++.|.+|+|||||++.+.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            67899999999999999886

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.068  Score=42.87  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++.-|+|-|..|+||||+++.|.+
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            355688899999999999998863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.81  E-value=0.038  Score=44.53  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.+.|.||+||||++.++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            478999999999999999974

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.61  E-value=0.076  Score=46.97  Aligned_cols=21  Identities=43%  Similarity=0.733  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++++||.||||||+++..|.+
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            579999999999999998863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.46  E-value=0.097  Score=43.34  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-+.+.|.||+|||++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            3589999999999999999963

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.39  E-value=0.095  Score=42.38  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+..|++||.+||||+|.+=.|.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456788999999999999987775

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.079  Score=42.94  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -..+-|+.|+|||||+|.|++
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            457889999999999999985

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.11  Score=41.96  Aligned_cols=24  Identities=21%  Similarity=0.509  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+..++++|.+||||+|.+-.|.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999998885

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.088  Score=41.81  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .-|+|-|..|+||||+++.|.+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999863

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.85  E-value=0.17  Score=42.14  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ....|+++|++|+|||||...+++
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999988863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.75  E-value=0.12  Score=41.62  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+..++++|.+||||+|.+=.|.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999988774

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.70  E-value=0.026  Score=43.69  Aligned_cols=18  Identities=28%  Similarity=0.268  Sum_probs=16.5

Q ss_pred             EEEcCCCCchHHHHHHHh
Q 022351          146 MLLGIPNVGKSALANSLH  163 (298)
Q Consensus       146 ~vvG~~nvGKSsliN~L~  163 (298)
                      +++|..|+||||++.+|.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999995

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.087  Score=42.31  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..|+|-|..||||||+++.|.+
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999973

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.19  E-value=0.11  Score=41.15  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .+.|++-|.||+||||+-..|.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3578889999999999999886

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.12  Score=41.06  Aligned_cols=22  Identities=36%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-|++.|.+|+||||+.|.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4689999999999999998864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=89.03  E-value=0.12  Score=41.71  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=16.6

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ..+..|++||.+||||+|.+=.|.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456778999999999999988775

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.02  E-value=0.074  Score=44.56  Aligned_cols=19  Identities=21%  Similarity=0.471  Sum_probs=17.0

Q ss_pred             EEEEcCCCCchHHHHHHHh
Q 022351          145 VMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~  163 (298)
                      .+++|..|+||||++.||.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3788999999999999994

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.92  E-value=0.12  Score=37.90  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCchHHHHHHHh
Q 022351          140 SDTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       140 ~~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      +.+++|.+-|.+|+|||||-|+|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            568999999999999999999995

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.15  Score=41.08  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..|+|-|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999999973

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=88.07  E-value=0.21  Score=40.04  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      +-.++++|.+||||||.+-.|.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3457889999999999998885

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.93  E-value=0.14  Score=41.40  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.+.|.||+||||++.++.+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=87.67  E-value=0.14  Score=40.40  Aligned_cols=20  Identities=20%  Similarity=0.424  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      -|++.|.||+||||+-..|.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57888999999999998885

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=87.56  E-value=0.14  Score=43.46  Aligned_cols=24  Identities=25%  Similarity=0.551  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++..++++|+|||||+.|.++|.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345688999999999999999963

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=87.52  E-value=0.16  Score=39.63  Aligned_cols=23  Identities=39%  Similarity=0.426  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.-+++.|.||+||||+.-.|..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999998875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.48  E-value=0.17  Score=39.99  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +-|++.|.+|+||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998853

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.39  E-value=0.31  Score=42.38  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCchHHHHHHHhh
Q 022351          143 VTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       143 ~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -.+++.|.||+|||++.++|.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.23  E-value=0.37  Score=39.99  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ..-.+.+.|.++.|||+|+++|..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            345889999999999999999974

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.23  E-value=0.16  Score=39.74  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +.-+++.|.||+||||+.-.|..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.23  E-value=0.46  Score=40.29  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +...++++|.|||||+.|..+|.+
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            344789999999999999999863

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.13  E-value=0.19  Score=40.23  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ++.-|+|-|.-|+||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            456799999999999999999963

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.01  E-value=0.12  Score=43.63  Aligned_cols=20  Identities=15%  Similarity=0.390  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      -|+|.|.+|+||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            69999999999999999885

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.64  E-value=0.18  Score=41.78  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      ...+.+.|.||+|||+|++++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHH
Confidence            34689999999999999999963

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.18  E-value=0.19  Score=40.26  Aligned_cols=20  Identities=20%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             EEEEcCCCCchHHHHHHHhh
Q 022351          145 VMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       145 i~vvG~~nvGKSsliN~L~~  164 (298)
                      +++.|.+|+|||.|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999973

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.15  E-value=0.51  Score=39.17  Aligned_cols=55  Identities=18%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             HHHHHHhcCCCC-eEEEEEeCCCCCCccc-HHHhccCCCCCCcEEEEEecCCCCChh
Q 022351           36 TRAIADRMPLVD-IILEVRDARIPFSSEF-DQLRNHHPFSSSRRILVLNKMDLASPT   90 (298)
Q Consensus        36 ~~~i~~~l~~aD-lVl~VvDa~~p~~~~~-~~l~~~l~~~~k~~IiVlNK~DL~~~~   90 (298)
                      ...+..++...+ ++++|.++..+..... ..+.+.+.....+.++|+||+|+.++.
T Consensus       152 ~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         152 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred             HHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccccccch
Confidence            455667777777 6677778876655443 234444444568999999999998753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.87  E-value=0.37  Score=42.41  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +..-|.|.|.+|+||||++.+++.
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhh
Confidence            456789999999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.36  Score=38.93  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCceEEEEEcCCCCchHHHHHHHhh
Q 022351          118 KEFLKFLQAHVRNLRKSDYDASSDTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       118 ~~L~~~l~~~i~~~~~~~~~~~~~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +++.+.+.+.+...        ..+-.+.+.|.||+||+|+...+.+
T Consensus        18 ~~~~~~L~~~i~~~--------~~~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          18 EHVLTALANGLSLG--------RIHHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             HHHHHHHHHHHHTT--------CCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--------CCCeeEEEECCCCCcHHHHHHHHHH
Confidence            55666666655431        1122478899999999999998763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.25  Score=38.01  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++--+.+.|.||+|||+|...+.
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la   44 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLA   44 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            34577899999999999988776

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=85.32  E-value=0.31  Score=37.73  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.-+++.|.||+||||+.-.|..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999988875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.08  E-value=0.19  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=18.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++++ +++|..|+||||++.||.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            4454 588999999999999984

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=84.10  E-value=0.24  Score=42.60  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+|=|.-|+||||+++.|..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=83.43  E-value=0.32  Score=41.82  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCchHHHHHHHhh
Q 022351          142 TVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .++|+|=|.-|+||||+++.|.+
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            47899999999999999999974

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=83.22  E-value=0.19  Score=42.82  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .+.++|.||+|||+|..+|..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998863

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.66  E-value=0.92  Score=38.35  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCchHHHHHHHhh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~~  164 (298)
                      +...+.++|.|||||+.+...|.+
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchHHHHHHHHHH
Confidence            334678999999999999998864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.38  E-value=0.7  Score=36.44  Aligned_cols=21  Identities=24%  Similarity=0.596  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      -+.+.|.+|+||+|+...+.+
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=82.19  E-value=0.44  Score=38.98  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=18.3

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++--+++.|.||+|||+|...|.
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            34467899999999999977664

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.30  E-value=1.3  Score=36.70  Aligned_cols=56  Identities=21%  Similarity=0.201  Sum_probs=37.0

Q ss_pred             HHHHHHHhcCCCCe-EEEEEeCCCCCCccc-HHHhccCCCCCCcEEEEEecCCCCChh
Q 022351           35 ATRAIADRMPLVDI-ILEVRDARIPFSSEF-DQLRNHHPFSSSRRILVLNKMDLASPT   90 (298)
Q Consensus        35 ~~~~i~~~l~~aDl-Vl~VvDa~~p~~~~~-~~l~~~l~~~~k~~IiVlNK~DL~~~~   90 (298)
                      ....+..++.+++. |+.|+++..+..... ..+.+.+.....+.++|+||+|.....
T Consensus       157 ~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred             HHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccccch
Confidence            34566778889985 556667765544433 344444333567899999999998653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.27  E-value=0.43  Score=37.68  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCchHHHHHHHh
Q 022351          141 DTVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       141 ~~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      ++-.+.+.|.||+|||+|...+.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            34578899999999999988775

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.08  E-value=0.38  Score=41.27  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCchHHHHHHHh
Q 022351          142 TVTVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       142 ~~~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+|=|.-|+||||+++.|.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            4689999999999999999996

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=80.83  E-value=0.38  Score=42.08  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHh
Q 022351          144 TVMLLGIPNVGKSALANSLH  163 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~  163 (298)
                      .++|+|.||+|||++++.|+
T Consensus        52 H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHH
Confidence            58999999999999998876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.68  E-value=0.42  Score=38.28  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHhh
Q 022351          144 TVMLLGIPNVGKSALANSLHQ  164 (298)
Q Consensus       144 ~i~vvG~~nvGKSsliN~L~~  164 (298)
                      .|++.|..|+||||+.|.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999963

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.19  E-value=0.59  Score=37.43  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             CccchhhHHHHHH--HHHHhcCCCCeEEEEEeCCCCCCccc--HHHhccCCCCCCcEEEEEecCCCCCh-hhHHHHHHHH
Q 022351           25 GGWYGPHMAAATR--AIADRMPLVDIILEVRDARIPFSSEF--DQLRNHHPFSSSRRILVLNKMDLASP-TQFKEWITFF   99 (298)
Q Consensus        25 ~~wfpghm~~~~~--~i~~~l~~aDlVl~VvDa~~p~~~~~--~~l~~~l~~~~k~~IiVlNK~DL~~~-~~~~~~~~~~   99 (298)
                      ..|.|.-......  ......-..+.++.|+|+........  +.+...+...+   ++|+||+|++++ +.+++++..+
T Consensus        99 G~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD---~ivlNK~Dl~~~~~~~~~~l~~l  175 (222)
T d1nija1          99 GMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD---RILLTKTDVAGEAEKLHERLARI  175 (222)
T ss_dssp             TTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS---EEEEECTTTCSCTHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCC---cccccccccccHHHHHHHHHHHH
Confidence            4667766544432  11222334688999999975322111  11222221122   789999999864 3344444444


Q ss_pred             HccCCCEEE
Q 022351          100 DQQNCPSFG  108 (298)
Q Consensus       100 ~~~~~~vi~  108 (298)
                       +...+++.
T Consensus       176 -NP~a~Ii~  183 (222)
T d1nija1         176 -NARAPVYT  183 (222)
T ss_dssp             -CSSSCEEE
T ss_pred             -hCCCeEEE
Confidence             33335543