Citrus Sinensis ID: 022403
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CAR3 | 447 | SNF1-related protein kina | yes | no | 0.986 | 0.655 | 0.738 | 1e-101 | |
| Q8LBB2 | 424 | SNF1-related protein kina | no | no | 0.794 | 0.556 | 0.328 | 6e-36 |
| >sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/294 (73%), Positives = 250/294 (85%), Gaps = 1/294 (0%)
Query: 2 AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4 SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
A+T + +AVKILS+ ILSAPV D SS DW+ERYLGI+DYS+IILWVLE+AELAA
Sbjct: 64 QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S +ATAAGVG G VGALG ALGMTGP A AGL AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EV
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEV 297
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Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 141/274 (51%), Gaps = 38/274 (13%)
Query: 21 EAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILS 80
E + +K S E L A F IPV +FP + IEI +DT++ +AV+ LS+ +LS
Sbjct: 33 EDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQTLSKFKVLS 92
Query: 81 APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 140
APV DAP + W +RY+GIV++ I++W+L E
Sbjct: 93 APVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLE------------------------ 128
Query: 141 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200
P + VAA+ G A T+ + F++V+ E +
Sbjct: 129 ---------PPSPRSPAVAASNGFSHDFTTDVLDNGDSAVTSGN-----FFEVLTSSELY 174
Query: 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV 260
K+T VR I ++RWAPFL + ++S L++LLLLSKY+++++P+++ G I+N ITQS V
Sbjct: 175 KNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGV 234
Query: 261 VQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
+ L C G WF+ + +S++GLP MS D +
Sbjct: 235 IHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHI 268
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Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | ||||||
| 357486631 | 443 | SNF1-related protein kinase regulatory s | 0.989 | 0.663 | 0.738 | 1e-115 | |
| 225424926 | 444 | PREDICTED: SNF1-related protein kinase r | 0.989 | 0.662 | 0.782 | 1e-102 | |
| 224140801 | 443 | predicted protein [Populus trichocarpa] | 0.989 | 0.663 | 0.741 | 1e-102 | |
| 255558196 | 443 | AMP-activated protein kinase, gamma regu | 0.989 | 0.663 | 0.761 | 1e-102 | |
| 147791120 | 355 | hypothetical protein VITISV_029225 [Viti | 0.989 | 0.828 | 0.778 | 1e-102 | |
| 356500477 | 443 | PREDICTED: SNF1-related protein kinase r | 0.989 | 0.663 | 0.755 | 1e-101 | |
| 42563087 | 447 | Cystathionine beta-synthase (CBS) protei | 0.986 | 0.655 | 0.738 | 1e-100 | |
| 145327199 | 476 | Cystathionine beta-synthase (CBS) protei | 0.986 | 0.615 | 0.738 | 1e-100 | |
| 356498190 | 443 | PREDICTED: SNF1-related protein kinase r | 0.989 | 0.663 | 0.768 | 3e-99 | |
| 297841713 | 447 | CBS domain-containing protein [Arabidops | 0.986 | 0.655 | 0.734 | 3e-97 |
| >gi|357486631|ref|XP_003613603.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|355514938|gb|AES96561.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/294 (73%), Positives = 255/294 (86%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MA +E + ++LS CD YFE IQSRKKLP +LQETLT +FA+IPV SFP VPGG+V+EI
Sbjct: 1 MAHEQEVRTSTQLSKCDRYFETIQSRKKLPQTLQETLTDSFAKIPVSSFPGVPGGKVVEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
+ADT + +AVKILSE NIL+APVK PDA SDW++RYLGI+DYSAIILWV+E+AELAA
Sbjct: 61 LADTPVGEAVKILSESNILAAPVKDPDAGIGSDWRDRYLGIIDYSAIILWVMESAELAAV 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S GTATAAGVG GTVGALGA+ALG TGPAA+AGLT AA GAAV GG+AA+K KDAP
Sbjct: 121 ALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMAKDAP 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
AA+ L EDFYKVILQEEPFKSTTVRSI+KSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAANNLGEDFYKVILQEEPFKSTTVRSILKSYRWAPFVPVAKNSAMLTVLLLLSKYRLRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+IEPG DI N+ITQSAV+QGLEGC+GRDWFD IA++P++DLGLPFMS+D+V
Sbjct: 241 VPVIEPGKADIVNFITQSAVIQGLEGCRGRDWFDCIAARPMADLGLPFMSADKV 294
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424926|ref|XP_002277342.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera] gi|296086419|emb|CBI32008.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/294 (78%), Positives = 256/294 (87%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MAQA+EAKE +L SCDAYFE IQSRKKLP SLQE+LTAAFARIPV SFP V GG+V+EI
Sbjct: 1 MAQAQEAKESPQLLSCDAYFENIQSRKKLPRSLQESLTAAFARIPVSSFPEVLGGKVVEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
D I +AVK LS CNILSAPV+ PDA +S DW+ERYLGI+DYSAIILWVLE+A+LAA
Sbjct: 61 RGDAIIAEAVKTLSLCNILSAPVRNPDAGTSLDWRERYLGIIDYSAIILWVLESAQLAAV 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
AFS TATAAGV G VGALGALALG TGPAAVAG+TVAA GAAVAGG+AA++G GKDAP
Sbjct: 121 AFSASTATAAGVSAGAVGALGALALGATGPAAVAGITVAAVGAAVAGGMAADRGMGKDAP 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD L E+FYKV+ QEEPFKSTTV+SI+KSYR APFLPVATD SMLSVLLLLSKYR+RN
Sbjct: 181 TAADHLGEEFYKVLFQEEPFKSTTVQSILKSYRSAPFLPVATDSSMLSVLLLLSKYRMRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+IEPG P +KNYITQSA+VQGLE CKGRDWFD IA+ PISDLGLPFMS +EV
Sbjct: 241 VPVIEPGQPFVKNYITQSAIVQGLERCKGRDWFDCIAAHPISDLGLPFMSHNEV 294
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140801|ref|XP_002323767.1| predicted protein [Populus trichocarpa] gi|222866769|gb|EEF03900.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/294 (74%), Positives = 257/294 (87%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MA ++ + S+LS CD+YFE IQSRKKLP SLQETLTAAFA IP SFP VPGG+VIEI
Sbjct: 1 MAGKQQVTKSSELSICDSYFENIQSRKKLPFSLQETLTAAFAEIPASSFPPVPGGKVIEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
+AD+++ DAV+ILSECNI++APVK DA S DW++RYLGI+DYSAI+LWVLE+AELAA
Sbjct: 61 LADSSVADAVRILSECNIMAAPVKKVDAGDSLDWRDRYLGIIDYSAIVLWVLESAELAAV 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A + +A AAG+GTG VGALGA+ALG+TGP AVAGLT AA GAAV GG+AAEKGAGKDA
Sbjct: 121 ALAATSAAAAGIGTGAVGALGAVALGLTGPVAVAGLTFAAVGAAVVGGVAAEKGAGKDAS 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD L +DFYKV+LQEEPFKSTTV SII SYRW+PFLPV T+ SMLS+LLLLSKYRLRN
Sbjct: 181 TAADNLGQDFYKVLLQEEPFKSTTVGSIITSYRWSPFLPVTTNSSMLSILLLLSKYRLRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+IEPG PDI+N+ITQSA+VQGLEGCKGRDWFD IA+QPIS++GLPF+S++EV
Sbjct: 241 VPVIEPGKPDIQNFITQSAIVQGLEGCKGRDWFDCIAAQPISNVGLPFVSANEV 294
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558196|ref|XP_002520125.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223540617|gb|EEF42180.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 224/294 (76%), Positives = 257/294 (87%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MAQ +E + S L SCDAYFE IQSRKKLP SLQ+TLT AFARIPV SFP VP G+VIEI
Sbjct: 1 MAQTKEKRASSNLESCDAYFETIQSRKKLPLSLQDTLTTAFARIPVSSFPLVPRGKVIEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
+ADT++ DAVKILSECNI +APVK +A +SSDW+E+YLG++DYSAIILWVLE+AELAA
Sbjct: 61 LADTSVADAVKILSECNITAAPVKNSEAGTSSDWREKYLGMIDYSAIILWVLESAELAAV 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S ATAAGVG G VGALGA+ALG+TGPAA+AGLT AA GAAV GG+AA+KG GKDAP
Sbjct: 121 ALSASRATAAGVGAGAVGALGAVALGITGPAAIAGLTAAAVGAAVVGGVAADKGMGKDAP 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAA L +DFYKVILQEEPFKSTTVRS++KSYRWAPFL VATD SMLSVLLLLSKYRLRN
Sbjct: 181 TAASNLGKDFYKVILQEEPFKSTTVRSVLKSYRWAPFLAVATDSSMLSVLLLLSKYRLRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP++EPG D++N+ITQSA+VQGLEGCKGRDWFD IA++PISD GLPFMS++EV
Sbjct: 241 VPVVEPGKTDVQNFITQSAIVQGLEGCKGRDWFDCIAARPISDFGLPFMSANEV 294
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791120|emb|CAN74704.1| hypothetical protein VITISV_029225 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/294 (77%), Positives = 255/294 (86%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MAQA+EAKE +L SCDAYFE IQSRKKLP SLQE+LTAAFARIPV SFP V GG+V+EI
Sbjct: 1 MAQAQEAKESPQLLSCDAYFENIQSRKKLPRSLQESLTAAFARIPVSSFPEVLGGKVVEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
D I +AVK LS CNILSAPV+ PDA +S DW+ERYLGI+DYSAIILWVLE+A+LAA
Sbjct: 61 RGDAIIAEAVKTLSLCNILSAPVRNPDAGTSLDWRERYLGIIDYSAIILWVLESAQLAAV 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
AFS TATAAGV G VGALGALALG TGPAAVAG+TVAA GAAVAGG+AA++G GKDAP
Sbjct: 121 AFSASTATAAGVSAGAVGALGALALGATGPAAVAGITVAAVGAAVAGGMAADRGMGKDAP 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD L E+FYKV+ QEEPFKSTTV+SI+KSYR APFLPVATD S LSVLLLLSKYR+RN
Sbjct: 181 TAADHLGEEFYKVLFQEEPFKSTTVQSILKSYRSAPFLPVATDSSXLSVLLLLSKYRMRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+IEPG P +KNYITQSA+VQGLE CKGRDWFD IA+ PISDLGLPFMS +EV
Sbjct: 241 VPVIEPGQPFVKNYITQSAIVQGLERCKGRDWFDCIAAHPISDLGLPFMSHNEV 294
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500477|ref|XP_003519058.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/294 (75%), Positives = 251/294 (85%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MAQ +E + + L CD YFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+VIEI
Sbjct: 1 MAQEQEYRTSTTLPKCDTYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
+ADT I +AVKILSE NILSAPVK P+A +SSDW+ RYLGI+DYSAIILWVLE AELA
Sbjct: 61 LADTPIGEAVKILSESNILSAPVKDPEAANSSDWRRRYLGIIDYSAIILWVLEGAELAHK 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A VGTATAAGVG G GA+GALALG+TGPAA+AGLT AAAGAA+AGG+AA++ KDAP
Sbjct: 121 ALLVGTATAAGVGAGAAGAMGALALGVTGPAAIAGLTAAAAGAALAGGIAADRVVAKDAP 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+IE G PDI N+ITQSAVVQGLEGCKGRDWFD IA + I+DLGLPFMS+DEV
Sbjct: 241 VPVIETGKPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKRIADLGLPFMSTDEV 294
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563087|ref|NP_564975.2| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|75262290|sp|Q9CAR3.1|KINGL_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit gamma-1-like; AltName: Full=AKIN subunit gamma-1-like; AltName: Full=CBS domain-containing protein CBSCBS2 gi|12325233|gb|AAG52563.1|AC010675_11 hypothetical protein; 77242-78931 [Arabidopsis thaliana] gi|190684768|gb|ACE82595.1| At1g69800 [Arabidopsis thaliana] gi|222424344|dbj|BAH20128.1| AT1G69800 [Arabidopsis thaliana] gi|332196855|gb|AEE34976.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/294 (73%), Positives = 250/294 (85%), Gaps = 1/294 (0%)
Query: 2 AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4 SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
A+T + +AVKILS+ ILSAPV D SS DW+ERYLGI+DYS+IILWVLE+AELAA
Sbjct: 64 QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S +ATAAGVG G VGALG ALGMTGP A AGL AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EV
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEV 297
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145327199|ref|NP_001077801.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|332196856|gb|AEE34977.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/294 (73%), Positives = 250/294 (85%), Gaps = 1/294 (0%)
Query: 2 AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 33 SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 92
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
A+T + +AVKILS+ ILSAPV D SS DW+ERYLGI+DYS+IILWVLE+AELAA
Sbjct: 93 QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 152
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S +ATAAGVG G VGALG ALGMTGP A AGL AA GAAVAGG+AAE+G GKDAP
Sbjct: 153 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 212
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 213 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 272
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EV
Sbjct: 273 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEV 326
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498190|ref|XP_003517936.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 226/294 (76%), Positives = 253/294 (86%)
Query: 1 MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
MAQ +E + + L CDAYFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+VIEI
Sbjct: 1 MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
+ADT + +AVKILSE NIL+APVK PDA +SSDW+ RYLGI+DYSAIILWVLE AELA A
Sbjct: 61 LADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQA 120
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A GTATAAGVG G GALGALALG+TGPAA+AGLT AAAGAA+AGG+AA+K KDAP
Sbjct: 121 ALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAP 180
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+IEPG PDI N+ITQSAVVQGLEGCKGRDWFD IA + ISDLGLPFMS+DEV
Sbjct: 241 VPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEV 294
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841713|ref|XP_002888738.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334579|gb|EFH64997.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 216/294 (73%), Positives = 249/294 (84%), Gaps = 1/294 (0%)
Query: 2 AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4 SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
A+T + +AVKILS+ ILSAPV D SS DW+ERYLGI+DYS+IILWVLE+AELAA
Sbjct: 64 PAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S +ATAAGVG G VGALG ALG+TGP AVAGL AA GAAVAGG+AA++G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGVTGPVAVAGLAAAAVGAAVAGGVAADRGIGKDAP 183
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADNLGKDFYQVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+I+ G PDIKNYITQSAVV GLEGCKGRDWFD I++ ISDLGLPFMS +EV
Sbjct: 244 VPVIKSGEPDIKNYITQSAVVHGLEGCKGRDWFDHISALSISDLGLPFMSPNEV 297
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | ||||||
| TAIR|locus:2114475 | 424 | KING1 "AT3G48530" [Arabidopsis | 0.356 | 0.25 | 0.349 | 8.5e-34 |
| TAIR|locus:2114475 KING1 "AT3G48530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 37/106 (34%), Positives = 64/106 (60%)
Query: 189 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGT 248
+F++V+ E +K+T VR I ++RWAPFL + ++ KY+++++P+++ G
Sbjct: 163 NFFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGV 222
Query: 249 PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
I+N ITQS V+ L C G WF+ + +S++GLP MS D +
Sbjct: 223 AKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHI 268
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9CAR3 | KINGL_ARATH | No assigned EC number | 0.7380 | 0.9865 | 0.6554 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.85 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 99.83 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.59 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.54 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.53 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.53 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.5 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.46 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.46 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.45 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.44 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.43 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.42 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.42 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.42 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.41 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.4 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.4 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.39 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.39 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.38 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.38 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.38 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.37 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.37 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.37 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.37 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.36 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.36 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.35 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.34 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.34 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.34 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.33 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.33 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.33 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.33 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.33 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.33 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.32 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.31 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.31 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.31 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.3 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.3 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.29 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.29 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.29 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.29 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.29 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.29 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.28 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.28 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.28 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.27 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 99.27 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.26 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.25 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.25 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.25 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.25 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.25 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.24 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.21 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.21 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.2 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.2 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 99.18 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 99.15 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.15 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.14 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.13 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.11 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 99.11 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.08 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.07 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 99.05 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.05 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 99.05 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.04 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 99.03 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.02 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.01 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.0 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 99.0 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.9 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 98.89 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 98.74 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 98.49 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.42 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 98.39 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 98.26 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 98.08 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 98.08 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.0 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 97.95 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 97.94 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 97.9 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 97.89 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 97.86 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 97.85 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.73 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 97.72 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 97.68 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 97.68 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 97.66 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 97.62 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 97.62 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 97.61 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 97.58 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 97.57 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 97.55 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 97.55 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 97.55 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 97.55 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.54 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 97.54 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 97.53 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 97.51 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 97.5 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 97.5 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 97.48 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 97.48 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 97.42 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 97.41 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 97.41 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 97.39 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 97.37 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 97.36 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 97.36 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 97.36 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 97.35 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 97.33 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 97.33 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 97.32 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 97.32 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 97.31 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 97.3 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 97.29 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 97.25 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 97.23 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 97.22 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 97.22 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 97.21 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 97.17 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 97.17 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 97.16 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 97.16 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 97.14 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 97.14 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 97.12 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 97.09 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 97.06 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 97.06 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 97.05 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 97.05 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 97.01 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 97.0 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 97.0 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 96.98 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 96.9 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 96.88 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 96.86 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 96.86 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 96.84 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 96.82 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 96.82 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 96.82 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 96.8 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 96.77 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 96.76 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 96.76 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 96.76 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 96.67 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 96.6 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 96.48 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 96.48 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 96.43 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 96.43 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 96.38 | |
| KOG0474 | 762 | consensus Cl- channel CLC-7 and related proteins ( | 96.24 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 96.21 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.18 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 96.05 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.0 | |
| KOG0475 | 696 | consensus Cl- channel CLC-3 and related proteins ( | 95.62 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 95.59 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.56 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 94.63 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 94.45 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 92.34 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 91.89 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 87.83 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 86.08 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 84.36 |
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=176.72 Aligned_cols=128 Identities=20% Similarity=0.336 Sum_probs=115.6
Q ss_pred hhcCccccCCCCC-----CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 41 FARIPVLSFPNVP-----GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 41 fa~IPVsSfP~~~-----~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
++--.|.|+|+.+ +.+++.+++|+|+.||.|+|++|+|.||||+|.+ +++||++++||..
T Consensus 161 idi~~m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d---------k~vGiit~~dI~~------ 225 (294)
T COG2524 161 IDISKMVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD---------KIVGIITLSDIAK------ 225 (294)
T ss_pred EEEeeeeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC---------ceEEEEEHHHHHH------
Confidence 4555688999987 8899999999999999999999999999999998 8999999999998
Q ss_pred HHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhh
Q 022403 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (297)
Q Consensus 116 e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~ 195 (297)
+ + +
T Consensus 226 --a--------------------------i---------------------------------------------a---- 228 (294)
T COG2524 226 --A--------------------------I---------------------------------------------A---- 228 (294)
T ss_pred --H--------------------------H---------------------------------------------H----
Confidence 3 1 1
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++-.++||.++|+.. .++|+.|..+++|+++|.||+++||.|+|. +|+++||||++||+..|+..
T Consensus 229 --~g~~~~kV~~~M~k~----vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 229 --NGNLDAKVSDYMRKN----VITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred --cCCccccHHHHhccC----CceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhcc
Confidence 333579999999999 999999999999999999999999999998 57999999999999988753
|
|
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=179.88 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=173.3
Q ss_pred hhhHHHHHHhhccCCCCHHHHHHHHhhcCccccCCCCC-----------------------------------CCCcEEe
Q 022403 16 CDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVP-----------------------------------GGRVIEI 60 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~e~Ln~~fa~IPVsSfP~~~-----------------------------------~~~VIeI 60 (297)
|.+|.|..+++.++|+...+.++.+|...|.+.+|..+ +++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 81 (381)
T KOG1764|consen 2 LRADDESLAPEFKPPLRTLSPLNLGFSSRPASRRPEASPFLVSENEVETAESNAVDTLSKFMKSHTCYDLLPTSSKLVVF 81 (381)
T ss_pred cccccccccccCCcchhhccccccccccCchhccccccccccccccccccccchhHHHHHHHhccCcccccCCcceeEEe
Confidence 56788888888888888888888888888888877654 5677888
Q ss_pred cCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccccch
Q 022403 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 140 (297)
Q Consensus 61 ~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~ 140 (297)
+...++.+|+.+|..|.+.++||.|... ++|+|++++.|++..++-....
T Consensus 82 d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~~~~----------------------- 131 (381)
T KOG1764|consen 82 DTKLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRYYKS----------------------- 131 (381)
T ss_pred eCCCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHhhcc-----------------------
Confidence 8888888888888888888888888764 3788888888888753322111
Q ss_pred hhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCceEe
Q 022403 141 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPV 220 (297)
Q Consensus 141 ~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV 220 (297)
....++++.+++....+..+++.+.+...|.||+.+
T Consensus 132 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 167 (381)
T KOG1764|consen 132 --------------------------------------------KSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSI 167 (381)
T ss_pred --------------------------------------------CCcHHHHhhhhhhhccccchhhhhhccccCCCceee
Confidence 133567889999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhccccccccCCCccc
Q 022403 221 ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS 290 (297)
Q Consensus 221 ~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~lselgLp~~~ 290 (297)
.++.+++++++.|.++|+|||||+|.+.|.+.+|+||.+|+++|..|.+.-||..|..++++|||+|.++
T Consensus 168 ~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 168 SPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred cCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 9999999999999999999999999888899999999999999999999999999999999999999988
|
|
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=112.58 Aligned_cols=97 Identities=22% Similarity=0.409 Sum_probs=86.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++++.+.+++|+.+|++.|.++++.+.||+|.+. ++++|+|+..|+.. .
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~-------~~~~Givt~~Dl~~--------~---------------- 49 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRK-------QQFVGMLTITDFIL--------I---------------- 49 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCC-------CEEEEEEEHHHHhh--------h----------------
Confidence 3789999999999999999999999999999642 27999999999876 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ .
T Consensus 50 ----------~---------------------------------------------~----------------------- 51 (98)
T cd04618 50 ----------L---------------------------------------------R----------------------- 51 (98)
T ss_pred ----------e---------------------------------------------e-----------------------
Confidence 1 0
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++++++||+|.++|+++|+||++++++
T Consensus 52 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 --LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred --eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7889999999999999999999999999975479999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=106.55 Aligned_cols=112 Identities=17% Similarity=0.271 Sum_probs=94.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+|..+++++|+.+|.+.|.+++...+||+|.+ ++|+|+|+..++..++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------g~~~G~vt~~dl~~~~~~~--------------------- 52 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH--------GKLAGVLTKTDVVRQMGRC--------------------- 52 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC--------CCEEEEEehHHHHHHHhhc---------------------
Confidence 67889999999999999999999999999976 3899999999998741110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+...+++|+++|...
T Consensus 53 -------------------------------------------------------------~~~~~~~~v~~~~~~~--- 68 (114)
T cd04619 53 -------------------------------------------------------------GGPGCTAPVENVMTRA--- 68 (114)
T ss_pred -------------------------------------------------------------CCCcccCCHHHHhcCC---
Confidence 0011356788998765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|.+ |++.|+||++++++
T Consensus 69 -~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 69 -VVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred -CeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 8899999999999999999999999999964 69999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-14 Score=108.04 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=94.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|++.|.++++...||.|.+ ++++|+|+..+|....+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~--------~~~~Givt~~dl~~~~~~---------------------- 51 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED--------GDLVGVVSRKDLLKASIG---------------------- 51 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHHHHHc----------------------
Confidence 67899999999999999999999999999975 389999999998872100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...+.+.++.++|... .
T Consensus 52 -------------------------------------------------------------~~~~~~~~~~~~~~~~--~ 68 (118)
T cd04617 52 -------------------------------------------------------------GADLQKVPVGVIMTRM--P 68 (118)
T ss_pred -------------------------------------------------------------CCCccCCCHHHHhCCC--C
Confidence 0112456788888631 2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCC--CCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~--~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++++.+||||.++ ++++|+||+++++.
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 378999999999999999999999999999863 69999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=106.01 Aligned_cols=117 Identities=17% Similarity=0.247 Sum_probs=90.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|++.|.++++...||+|.+ ++++|+++..||.....+.. ...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~--------~~~~Giv~~~dl~~~~~~~~-~~~---------------- 56 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN--------GKVVDVYSRFDVINLAKEGA-YNN---------------- 56 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC--------CeEEEEEeHHHHHHHHhcCc-ccc----------------
Confidence 57889999999999999999999999999875 38999999999997421110 000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhH--hhhcc
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI--IKSYR 213 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI--~~s~r 213 (297)
....+.+. .+...
T Consensus 57 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 71 (120)
T cd04641 57 -----------------------------------------------------------------LDLTVGEALERRSQD 71 (120)
T ss_pred -----------------------------------------------------------------ccCCHHHHHhhcccC
Confidence 00011111 11222
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+.|+..+.+++++.+++.+|.+++.+++||+|.+ |++.|+||+++++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhcC
Confidence 4468899999999999999999999999999974 699999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=104.48 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=91.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|++.|.+++....||+|.+ ++++|+|+..|+.. ...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~--------~~~--------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE--------NKVLGQVTLSDLLE--------IGP--------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHh--------hcc---------------
Confidence 46788999999999999999999999999875 38999999999876 100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.+.+++|.++|...
T Consensus 51 --------------------------------------------------------------~~~~~~~v~~~~~~~--- 65 (111)
T cd04603 51 --------------------------------------------------------------NDYETLKVCEVYIVP--- 65 (111)
T ss_pred --------------------------------------------------------------ccccccChhheeecC---
Confidence 112345688888544
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|.+ |++.|+||++++++
T Consensus 66 -~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 66 -VPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred -CcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 7889999999999999999999999999964 69999999999986
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=99.39 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++|+.+|.+.+.++++...||+|.+ ++++|+|+..+|..|+....+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~------------------ 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE--------GKYVGTISLTDILWKLKGLENL------------------ 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC--------CcEEEEEeHHHHHHHhhccCch------------------
Confidence 67899999999999999999999999999874 3899999999999863211000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.+. ..++++.++|...
T Consensus 56 -----------------------------------------------------~~~~-------~~~~~v~~~~~~~--- 72 (116)
T cd04643 56 -----------------------------------------------------DLER-------LVDLKVIDVMNTD--- 72 (116)
T ss_pred -----------------------------------------------------hHHH-------HhCCcHHHHhcCC---
Confidence 0010 1356788998765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++ .+||+|. ++++.|+||+.++++
T Consensus 73 -~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 73 -VPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred -CceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 899999999999999998865 5999996 469999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=100.69 Aligned_cols=122 Identities=21% Similarity=0.316 Sum_probs=96.6
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.++.++++.++.++|.++++...||+|.+ ++++|+|+..+|..++......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~~~~----------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD--------RRLVGIVTQRDLLRHARPDGRR----------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC--------CCEEEEEEHHHHHhhhcccccc-----------------
Confidence 467899999999999999999999999999875 3899999999998742100000
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.. -.+++ .....+++.++|...
T Consensus 57 --------------------------------------------------~~-~~~~~-----~~~~~~~i~~~~~~~-- 78 (124)
T cd04600 57 --------------------------------------------------PL-RGRLR-----GRDKPETVGDIMSPP-- 78 (124)
T ss_pred --------------------------------------------------hh-hhhhh-----cccccccHHHhccCC--
Confidence 00 00111 123566799998664
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|. +|++.|+||++++++
T Consensus 79 --~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 79 --VVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred --CeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 899999999999999999999999999997 469999999999975
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=100.30 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=93.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|++.|.++++...||.|.+. ++|+|+|+..|+..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------~~~~G~v~~~dl~~~~~~~~-------------------- 54 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE-------SDAYGIVTMRDILKKVVAEG-------------------- 54 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC-------CcEEEEEehHHHHHHHHhCC--------------------
Confidence 467899999999999999999999999998641 28999999999988532110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.....+++.++|..
T Consensus 55 --------------------------------------------------------------~~~~~~~v~~~~~~---- 68 (114)
T cd04630 55 --------------------------------------------------------------RDPDRVNVYEIMTK---- 68 (114)
T ss_pred --------------------------------------------------------------CCCCccCHHHHhcC----
Confidence 01134678899864
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+||++++++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 69 PLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 4889999999999999999999999999995 68999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-13 Score=127.17 Aligned_cols=123 Identities=22% Similarity=0.384 Sum_probs=108.9
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
+..|+++..|+|+.+|-++|-+|+|..-||.|+++ |++|||...|+... +.
T Consensus 252 SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~--------rl~GiVt~~dl~~~-------a~-------------- 302 (382)
T COG3448 252 SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHR--------RLVGIVTQRDLLKH-------AR-------------- 302 (382)
T ss_pred CccceecCCcCChHHHHHHHHHcCccccccccccc--------ceeeeeeHHHHhhc-------cC--------------
Confidence 68999999999999999999999999999999985 89999999998772 11
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
++| |+-| ...+.++|+.||++-
T Consensus 303 --------------~~p----------------------------------------~qrl---r~~~~~~vk~imt~~- 324 (382)
T COG3448 303 --------------PSP----------------------------------------FQRL---RFLRPPTVKGIMTTP- 324 (382)
T ss_pred --------------cch----------------------------------------HHHh---hccCCCcccccccCc-
Confidence 122 4444 466899999999987
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
..++++|+++-+.+-+|...+.|-|||+|. .|+++|||||+|+|..|...
T Consensus 325 ---v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 325 ---VVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ---ceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHHH
Confidence 999999999999999999999999999998 57999999999999998754
|
|
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=100.69 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=90.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+..++++.+|.+.|.++++..+||+|.+. ++++|+|+..|++.++....+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-------~~~~Giv~~~dl~~~~~~~~~~~~~--------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES-------GEVIGILSQRRLVEFLWENARSFPG--------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC-------CcEEEEEEHHHHHHHHHHhHHhccc---------------
Confidence 567899999999999999999999999999751 2899999999999864322111100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+... + ...++.+++. .
T Consensus 60 ----------------------------------------------------~~~~~---~----~~~~~~~~~~----~ 76 (123)
T cd04627 60 ----------------------------------------------------LDPLY---P----IPLRDLTIGT----S 76 (123)
T ss_pred ----------------------------------------------------hhhhh---h----hhhhhcccCc----C
Confidence 00000 0 0012234443 3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
++..+.+++++.+++.+|.+++++++||+|.+ ++++|+||++++=
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 48999999999999999999999999999974 6899999999873
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=98.51 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=92.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+++++|+.++.+.|.++++...||.|.+ ++|+|+|+..+|...+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~~~~~~--------------------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD--------GGVVGIITLPDLLRALEAD--------------------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC--------CCEEEEEEHHHHHHHHhcc---------------------
Confidence 34678999999999999999999999999875 4899999999998731100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.....++++++|...
T Consensus 53 --------------------------------------------------------------~~~~~~~~~~~~~~~--- 67 (115)
T cd04593 53 --------------------------------------------------------------EAGEPSAVDEVATPP--- 67 (115)
T ss_pred --------------------------------------------------------------cccccccHHHhccCC---
Confidence 011234577777654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCC-CCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~-~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.++ |++.|+||+++|++
T Consensus 68 -~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 68 -LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -ceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 88899999999999999999999999999752 69999999999985
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=98.04 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.++.++++.+|++.|.++++...||.|.+ ++++|+|+..|+..++.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~~~~--------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN--------GRLLGTVTDGDIRRALLKG--------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC--------CCEEEEEEcHHHHHHHhcC---------------------
Confidence 45778999999999999999999999999876 3899999999997731100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.. .+++|.++|...
T Consensus 54 --------------------------------------------------------------~~-~~~~v~~~~~~~--- 67 (113)
T cd04607 54 --------------------------------------------------------------LS-LDDPVSEVMNRN--- 67 (113)
T ss_pred --------------------------------------------------------------CC-cCCCHHHhhcCC---
Confidence 01 135688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..|.+++++.+++.+|.+++.+++||+|. ++++.|+||+++|+.
T Consensus 68 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 68 -PITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred -CEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 788999999999999999999999999996 469999999999863
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-12 Score=96.55 Aligned_cols=112 Identities=22% Similarity=0.380 Sum_probs=93.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.+|.+.|.++++...||+|.+ ++++|+|+..+|..++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~-------------------- 53 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN--------GNLVGFLSEQDCLKQLLESS-------------------- 53 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC--------CeEEEEeehHHHHHHhhhhh--------------------
Confidence 56789999999999999999999999999875 38999999999988532211
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ ....+.++.++|..
T Consensus 54 -------------------------------------------------------~------~~~~~~~v~~~~~~---- 68 (114)
T cd04629 54 -------------------------------------------------------Y------HCDGVATVRDIMTT---- 68 (114)
T ss_pred -------------------------------------------------------h------ccCCCccHHHHhcc----
Confidence 0 00124568888865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. |.+.|+||+.++++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 69 EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4788999999999999999999999999995 69999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=101.00 Aligned_cols=133 Identities=18% Similarity=0.310 Sum_probs=95.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.++..+++++++.+|+++|.++++...||+|.+ ++++|+|+..+|...+.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~--------~~~~Gvi~~~dl~~~~~~~~~~~~~-------------- 59 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD--------GRLVGIVSEGDLLRRAELGTERRRA-------------- 59 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC--------CCEEEEeeHHHHHHHhcccCcchhh--------------
Confidence 567889999999999999999999999999875 4899999999998632211100000
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
..+.. ....+++...+ ......+++++|..
T Consensus 60 --------~~~~~------------------------------------~~~~~~~~~~~---~~~~~~~v~~~~~~--- 89 (135)
T cd04586 60 --------RWLDL------------------------------------LAGAEELAAAF---VRSHGRKVADVMTR--- 89 (135)
T ss_pred --------hHHHH------------------------------------hcchHHHHHHH---HHhcCCCHHHHhCC---
Confidence 00000 00000000000 01234579999865
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+++||+| +|++.|+||+.++++
T Consensus 90 -~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 90 -PVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred -CceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 489999999999999999999999999999 479999999999875
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-12 Score=98.42 Aligned_cols=125 Identities=20% Similarity=0.300 Sum_probs=95.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|.++|.++++.+.||+|.+ ++|+|+|+..++..++........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------~~~~G~it~~dl~~~~~~~~~~~~---------------- 57 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN--------GKLTGIVTRHDIVDFVVRDRDKAR---------------- 57 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC--------CcEEEEEEHHHHHHHHhhhhhhcc----------------
Confidence 56789999999999999999999999999986 389999999999875332111000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. ...+ . + . +.+.+++++++|..
T Consensus 58 ---------~-~~~~----------------------------------~---~-~------~~~~~~~~~~~~~~---- 79 (128)
T cd04632 58 ---------T-GDRS----------------------------------G---E-K------ERMLDLPVYDAMSS---- 79 (128)
T ss_pred ---------h-hhhh----------------------------------h---h-h------hhhccCcHHHHhcC----
Confidence 0 0000 0 0 0 11245678999865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcC-CCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~-~~~~i~niITQSaVI~ 262 (297)
|++.+.++.++.+++.+|.+++.+.+||++. ++++++|+||++++++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4889999999999999999999999999963 4579999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=95.21 Aligned_cols=111 Identities=24% Similarity=0.374 Sum_probs=92.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+..++|+.++.+.+.++++...||+|.+ ++++|++...++..++.+. .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~---~----------------- 53 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG--------GRLVGIFSERDIVRKVALR---G----------------- 53 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEehHHHHHHHhhc---C-----------------
Confidence 56789999999999999999999999999875 3899999999998742110 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+.+++++|..
T Consensus 54 --------------------------------------------------------------~~~~~~~~~~~~~~---- 67 (113)
T cd04623 54 --------------------------------------------------------------ASALDTPVSEIMTR---- 67 (113)
T ss_pred --------------------------------------------------------------CCccccCHHHhcCC----
Confidence 00124568888854
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+||+.++++
T Consensus 68 ~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 68 NVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4888999999999999999999999999996 68999999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=99.25 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=90.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+..++++.+|++.|.++++...||+|.+ ++++|+|+..||..-... ..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~~~~~---~~----------------- 53 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD--------DNFIGVITAVDLLGEEPI---KR----------------- 53 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC--------CcEEEEEEHHHHhhChhh---HH-----------------
Confidence 46889999999999999999999999999975 389999999998851000 00
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ . .......+++|.++|+...
T Consensus 54 ---------~---------------------------------------------~---~~~~~~~~~~v~~im~~~~-- 74 (126)
T cd04640 54 ---------I---------------------------------------------Q---EGGISRSELTVADVMTPKE-- 74 (126)
T ss_pred ---------H---------------------------------------------H---HcCCCchheEHHHhcCchh--
Confidence 0 0 0001123567999995431
Q ss_pred CceEe----cCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPV----ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV----~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+.+.+ .+++++.+++.+|.+++.+.+||+|.+.|++.|+||++++++
T Consensus 75 ~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 75 DLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 11223 368899999999999999999999975358999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=99.51 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=90.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|++.|.++++...||+|.+ ++|+|+|+..|+............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~~---------------- 57 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK--------GKLIGNISASDLKGLLLSPDDLLL---------------- 57 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC--------CcEEEEEEHHHhhhhhcCcchhhc----------------
Confidence 57889999999999999999999999999876 389999999999874221110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.| .. .+.+.. + ++++.+. ....
T Consensus 58 -------------~~------------------------------~~------~~~~~~---~-----~~~~~~~-~~~~ 79 (126)
T cd04642 58 -------------YR------------------------------TI------TFKELS---E-----KFTDSDG-VKSR 79 (126)
T ss_pred -------------cc------------------------------ch------hhhhhh---h-----hcccccc-cccC
Confidence 00 00 000000 0 1122111 2345
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|+..+.+++++.+++.+|.+++.+++||+|.+ ++++|+||++++++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 68899999999999999999999999999974 69999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-12 Score=95.95 Aligned_cols=94 Identities=19% Similarity=0.352 Sum_probs=83.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|++.|.++++..+||+|.+ ++|+|+|+..||.. .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~--------~----------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD--------GKLSGIITERDLIA--------K----------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEEHHHHhc--------C-----------------
Confidence 46788999999999999999999999999865 38999999888866 1
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. .
T Consensus 49 ---------~----------------------------------------------------~----------------- 50 (96)
T cd04614 49 ---------S----------------------------------------------------E----------------- 50 (96)
T ss_pred ---------C----------------------------------------------------C-----------------
Confidence 0 0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..++.++++.+++.+|.+++++++||+|.+ |++.|+||++++++
T Consensus 51 -~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 -VVTATKRTTVSECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred -cEEecCCCCHHHHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 7889999999999999999999999999964 69999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=94.07 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=91.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.++.++++.+|++.|.+++....||.|.+ +++|+|+..++.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~~l~~~~------~----------------- 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGD---------PRLGIVTRTDLLDAV------L----------------- 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCC---------eEEEEEEHHHHHHHH------H-----------------
Confidence 45788999999999999999999999999873 799999999987610 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.....+++++++|..
T Consensus 50 ------------------------------------------------------------~~~~~~~~~i~~~~~~---- 65 (111)
T cd04589 50 ------------------------------------------------------------LDGLPSSTPVGEIATF---- 65 (111)
T ss_pred ------------------------------------------------------------cCCCCCCCCHHHHhCC----
Confidence 0011245778898865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++..|++++++.+++.+|.+++.+.+||+|. +++.|+||+.+++++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~ 111 (111)
T cd04589 66 PLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF 111 (111)
T ss_pred CcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence 4899999999999999999999999999994 689999999999864
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-12 Score=94.56 Aligned_cols=109 Identities=18% Similarity=0.305 Sum_probs=91.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.++++.+.++++...||+|.+ ++++|+++..++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~~~---------------------- 51 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE--------EKLKGVVTFTDILDLDLF---------------------- 51 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC--------CCEEEEEehHHhHHHHhh----------------------
Confidence 56789999999999999999999999999875 389999999999874110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+.+|.++|..
T Consensus 52 --------------------------------------------------------------~~~~~~~v~~~~~~---- 65 (111)
T cd04626 52 --------------------------------------------------------------ESFLEKKVFNIVSQ---- 65 (111)
T ss_pred --------------------------------------------------------------cccccCcHHHHhcC----
Confidence 00023457888764
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+++||+|. +++.|+||..++++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 66 DVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4889999999999999999999999999996 68999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=100.50 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=93.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++|+.+|++.|.++++...||+|.+ ++++|+|+..+++.-+.+.
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~--------~~~~Gii~~~dl~~~~~~~--------------------- 53 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES--------GKILGMVTLGNLLSSLSSG--------------------- 53 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHHHHHHh---------------------
Confidence 56889999999999999999999999999875 3899999999998721110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..-.+++|.++|...
T Consensus 54 --------------------------------------------------------------~~~~~~~v~~im~~~--- 68 (124)
T cd04608 54 --------------------------------------------------------------KVQPSDPVSKALYKQ--- 68 (124)
T ss_pred --------------------------------------------------------------ccCCCCcHHHHhhcc---
Confidence 011357899999776
Q ss_pred CceEecCCCCHHHHHHHHhhc---------CCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKY---------RLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~---------rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+..+++++++.++..+|.++ +.+.+||+|. +|+++||||..+++++|
T Consensus 69 -~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 69 -FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred -ceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 88999999999999976443 5788899885 47999999999999874
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-12 Score=95.60 Aligned_cols=120 Identities=18% Similarity=0.314 Sum_probs=95.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.++.++|.++++..+||+|.+ ++++|+|...+|..+........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~~~~----------------- 56 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED--------GKLVGLLTQRDLLRAALSSLSDN----------------- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC--------CCEEEEEEHHHHHHHhccccccc-----------------
Confidence 67889999999999999999999999999875 38999999999987421110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..++. +...++++.+++...
T Consensus 57 ---------------------------------------------------~~~~~------~~~~~~~v~~~~~~~--- 76 (122)
T cd04803 57 ---------------------------------------------------GEESL------TKERDVPVAEVMKTD--- 76 (122)
T ss_pred ---------------------------------------------------ccccc------ccccCcCHHHhhCCC---
Confidence 00000 122567899998654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |++.|+||..++++
T Consensus 77 -~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 77 -VLTVTPDTPLREAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred -CeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 8899999999999999999999999999974 69999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-12 Score=98.69 Aligned_cols=131 Identities=23% Similarity=0.314 Sum_probs=96.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|.+.|.++++.+.||.|.+ ++++|+|+..+|..|+......... +
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~i~~~~l~~~~~~~~~~~~~-------------~- 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE--------GRVVGIVSEGDLIRKIYKGKGLFYV-------------T- 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC--------CCEEEEEeHHHHHHHHhccCCcccc-------------c-
Confidence 46789999999999999999999999999875 3899999999999864322110000 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.. +..... + ++-. +....+++.++|...
T Consensus 60 ---------~~-------------------------~~~~~~------~---~~~~------~~~~~~~v~~~~~~~--- 87 (132)
T cd04636 60 ---------LL-------------------------YSVIFL------D---ESKI------KKLLGKKVEEIMTKK--- 87 (132)
T ss_pred ---------cc-------------------------cccccc------c---hHHH------HHHcCCCHHHhccCC---
Confidence 00 000000 0 1111 112345788998654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+..+.+++++.+++.+|.+++.+++||+|. |+++|+||+++++++
T Consensus 88 -~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~~ 132 (132)
T cd04636 88 -VITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIRS 132 (132)
T ss_pred -ceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhcC
Confidence 788999999999999999999999999996 699999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-12 Score=94.20 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=88.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+..++|+.+|.+.|.++++...||.+.+ +|+|+|+..+|..++.+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~---~----------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERG---------ELVGLLTFREVLQAMAQH---G----------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCC---------EEEEEEEHHHHHHHHHhc---C-----------------
Confidence 46788999999999999999987666666543 899999999998742110 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+++|.++|+..
T Consensus 53 --------------------------------------------------------------~~~~~~~v~~~~~~~--- 67 (112)
T cd04625 53 --------------------------------------------------------------AGVLDTTVRAIMNPE--- 67 (112)
T ss_pred --------------------------------------------------------------CchhcCCHHHHhCCC---
Confidence 011245789998654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..++.++++.+++.+|.+++.+++||+| ++++.|+||++++++
T Consensus 68 -~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 68 -PIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred -CeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 78899999999999999999999999999 468999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-12 Score=95.81 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=89.8
Q ss_pred CcEEecCCCCHHHHHHHHHHCC-CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~n-IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++..+.+++|+.+|.+.|.+++ +..+||.|.+ ++++|+|...||.... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~~~------~---------------- 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE--------GRYVGIISLADLRAIP------T---------------- 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC--------CcEEEEEEHHHHHHHH------H----------------
Confidence 4678899999999999998876 8999999875 3899999999987620 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+.+.++++.++|....
T Consensus 52 ---------------------------------------------------------------~~~~~~~v~~~~~~~~- 67 (114)
T cd04801 52 ---------------------------------------------------------------SQWAQTTVIQVMTPAA- 67 (114)
T ss_pred ---------------------------------------------------------------hhccccchhhhhcccc-
Confidence 0012456888886432
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. ++++.|+||+.+|++
T Consensus 68 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 68 -KLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred -cceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 3568889999999999999999999999996 468999999998875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-12 Score=94.60 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=93.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
..++.+.++.++.+|.++|.++++.+.||.+.+ +++|+|+..||+..+....
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~---------~l~Giit~~di~~~~~~~~------------------- 58 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG---------KLVGIITERDILRALAAGG------------------- 58 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHHHhccC-------------------
Confidence 578999999999999999999999999999987 8999999999999411110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+|.++|+.
T Consensus 59 -----------------------------------------------------------------~~~~~v~~v~~~--- 70 (117)
T COG0517 59 -----------------------------------------------------------------KRLLPVKEVMTK--- 70 (117)
T ss_pred -----------------------------------------------------------------CccccHHHhccC---
Confidence 000067777776
Q ss_pred CCceEecCCCCHHHHHHHHhh-cCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSK-YRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK-~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
|.+.+.++.++.+++.+|.+ ++++++||+|.++++++|+||+.+++
T Consensus 71 -~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 71 -PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 68999999999999999999 89999999998534999999999874
|
|
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=98.98 Aligned_cols=133 Identities=14% Similarity=0.243 Sum_probs=95.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+..++|+.+|+++|.++++...||+|.+ ++++|+|+..++..+........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~----------------- 56 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN--------GKPVGVITYRDLAFAEFEDNERG----------------- 56 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC--------CCEEEEEeHHHHHHHhhcccccc-----------------
Confidence 45778999999999999999999999999975 38999999999988532110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ | ++.. . ......+++... ..-.+.+|+++|..
T Consensus 57 ---------~----~-------------------------~~~~-~-~~~~~~~~~~~~---~~~~~~~v~~~~~~---- 89 (135)
T cd04621 57 ---------L----P-------------------------KKSI-K-MKRKAGQKRYRY---VKEVPLVAEDIMTE---- 89 (135)
T ss_pred ---------c----c-------------------------hhhh-h-hhhhcccccccc---cccccccHHHhcCC----
Confidence 0 0 0000 0 000000001000 11135579999865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..|.+++++.+++.+|.+++.+.+||+|. +++.|+||++++++
T Consensus 90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 90 EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 4889999999999999999999999999995 68999999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=94.30 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=93.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.++++.|.++++...||+|.+ ++++|+++..+|.... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~------~~~--------------- 52 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA--------GELIGIITRRDIIRAG------SVR--------------- 52 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEcHHHHhhc------ccc---------------
Confidence 56889999999999999999999999999875 4899999999997620 000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. + .++.. +.....++++.++|...
T Consensus 53 ---------~----~------------------------------------~~~~~----~~~~~~~~~~~~~~~~~--- 76 (122)
T cd04635 53 ---------T----S------------------------------------VEDQQ----RTQTKASPTVEKIMSTP--- 76 (122)
T ss_pred ---------c----c------------------------------------ccchh----hhhhhccCcHHHHhcCC---
Confidence 0 0 00000 00011356788888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 77 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 77 -VYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred -CeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 8999999999999999999999999999974 79999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=93.78 Aligned_cols=110 Identities=16% Similarity=0.346 Sum_probs=87.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCC-CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~n-IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
+++.++.++|+.++.+.+.+++ ....||.|.+ +++|+|+..||.....+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~-------------------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKG---------RLLGIFTERDIVRLTAIG-------------------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCC---------cEEEEEeHHHHHHHHhcC--------------------
Confidence 4577899999999999999888 4556666643 899999999997631000
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+++++++|..
T Consensus 53 ---------------------------------------------------------------~~~~~~~i~~~~~~--- 66 (115)
T cd04620 53 ---------------------------------------------------------------KDLSDLPIGEVMTQ--- 66 (115)
T ss_pred ---------------------------------------------------------------CCccccCHHHhcCC---
Confidence 01124668888854
Q ss_pred CCceEecCC--CCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATD--DSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~--~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.++ +++.+++.+|.+++.+.+||+|.+ |++.|+||++++++
T Consensus 67 -~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 67 -PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred -CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 47888877 789999999999999999999974 69999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=91.71 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=91.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+.+++|+.+|.++|.+++....||+|.+ ++++|+|+..++..++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~---------------------- 51 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD--------GHLVGLLTRDDLIRALAE---------------------- 51 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC--------CcEEEEeeHHHHHHHHHh----------------------
Confidence 45678999999999999999999999999974 389999999998874210
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...++.|.++|..
T Consensus 52 ---------------------------------------------------------------~~~~~~v~~~~~~---- 64 (111)
T cd04639 52 ---------------------------------------------------------------GGPDAPVRGVMRR---- 64 (111)
T ss_pred ---------------------------------------------------------------cCCCCcHHHHhcC----
Confidence 0013457888754
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+..++++.+++.+|.+++.+.+||+|.+ +++.|+||++++++
T Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 65 DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 58999999999999999999999999999963 69999999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=91.41 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=91.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.+|.+.|.++++...||.|.+ +++|+|...++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~---------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDG---------RLVGIVTDRDLRNRVVAE--------------------- 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECC---------EEEEEEEhHHHHHHHhcc---------------------
Confidence 56789999999999999999999999999873 899999999998621000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+...++++.+++...
T Consensus 52 --------------------------------------------------------------~~~~~~~i~~~~~~~--- 66 (111)
T cd04800 52 --------------------------------------------------------------GLDPDTPVSEVMTAP--- 66 (111)
T ss_pred --------------------------------------------------------------CCCccCCHHHHhCCC---
Confidence 111235688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+++++++.+++.+|.+++.+.+||+|. +++.|+||..+|++
T Consensus 67 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 67 -PITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 889999999999999999999999999996 68999999999985
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=91.12 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=93.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+.+++++.++.++|.++++...||+|.+ ++++|+|...++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~G~v~~~~l~~~~~~---------------------- 51 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD--------GRLVGIVSLDDIREILFD---------------------- 51 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC--------CCEEEEEEHHHHHHHHhc----------------------
Confidence 46779999999999999999999999999975 389999999998764100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...+...++.++|+..
T Consensus 52 -------------------------------------------------------------~~~~~~~~v~~~~~~~--- 67 (114)
T cd04613 52 -------------------------------------------------------------PSLYDLVVASDIMTKP--- 67 (114)
T ss_pred -------------------------------------------------------------ccccccEEHHHhccCC---
Confidence 0112246788988765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++..|.+++.+.+||+|.+.+++.|+||+.++++
T Consensus 68 -~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 68 -PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred -CcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 7889999999999999999999999999862368999999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=91.17 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=91.2
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.++.++++.+|.+.|.++++...||+|.+ +|+|+|...++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~dl~~~~------~---------------- 50 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGG---------RVVGIISRRDVEKAL------R---------------- 50 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCC---------EEEEEEEHHHHHHHH------h----------------
Confidence 467889999999999999999999999999973 899999999987621 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+.+.+.+++++|..
T Consensus 51 ---------------------------------------------------------------~~~~~~~~~~~~~~--- 64 (110)
T cd04595 51 ---------------------------------------------------------------HGLGHAPVKDYMST--- 64 (110)
T ss_pred ---------------------------------------------------------------cccccCcHHHHhcC---
Confidence 01134568888865
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+++.+..++++.+++.+|.+++.+.+||+| +|++.|+||+.++++
T Consensus 65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 478899999999999999999999999999 569999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=122.94 Aligned_cols=132 Identities=12% Similarity=0.184 Sum_probs=108.9
Q ss_pred HHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHH
Q 022403 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (297)
Q Consensus 38 n~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~ 117 (297)
...+..++|..+... +.+.++.++++.|+++.+.+++....||+|++ +|++|+|+..|+...+.+.
T Consensus 441 ~~~L~~~~V~dim~~---~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~--------g~lvGiVt~~dL~~~l~~~--- 506 (574)
T PRK01862 441 RERLRTTQMRELIQP---AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD--------GRFRGAVALKDITSDLLDK--- 506 (574)
T ss_pred hhHHhhCcHHHHhcC---CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC--------CeEEEEEEHHHHHHHhhcc---
Confidence 456788999887653 56789999999999999999999999999976 4899999999987721100
Q ss_pred HHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhc
Q 022403 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (297)
Q Consensus 118 a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~ 197 (297)
T Consensus 507 -------------------------------------------------------------------------------- 506 (574)
T PRK01862 507 -------------------------------------------------------------------------------- 506 (574)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCC-CCeeEEeehHHHHHHHhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~-~~i~niITQSaVI~~L~~~ 267 (297)
+...+++++|+|+.. +..+++++++.+++.+|.+++.+++||+|.++ +++.|+||++|+++.+.+.
T Consensus 507 ~~~~~~~v~dim~~~----~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 507 RDTTDKTAADYAHTP----FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred cccccchHHHhccCC----CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence 111235788998765 78999999999999999999999999999754 5899999999999998753
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=113.34 Aligned_cols=123 Identities=9% Similarity=0.124 Sum_probs=96.8
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
.++|..+-.. ..+++.+.+++|+.+|++.|.++++...||+|.+ ++++|+|+-.||... + . .
T Consensus 201 ~~~V~dim~~-~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~--------g~lvGivt~~Dl~~~-~-----~-~-- 262 (326)
T PRK10892 201 LLRVSDIMHT-GDEIPHVSKTASLRDALLEITRKNLGMTVICDDN--------MKIEGIFTDGDLRRV-F-----D-M-- 262 (326)
T ss_pred cCcHHHHhCC-CCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC--------CcEEEEEecHHHHHH-H-----h-c--
Confidence 3445555431 2378999999999999999999998666777755 389999999998651 0 0 0
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
.....+
T Consensus 263 --------------------------------------------------------------------------~~~~~~ 268 (326)
T PRK10892 263 --------------------------------------------------------------------------GIDLRQ 268 (326)
T ss_pred --------------------------------------------------------------------------CCCccc
Confidence 001235
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++|.++|... ++.+.+++++.+++.+|.+++++++||+| +++++||||++++++.
T Consensus 269 ~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 269 ASIADVMTPG----GIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCHHHhcCCC----CEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 6799999764 88999999999999999999999999998 4589999999999863
|
|
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=94.72 Aligned_cols=119 Identities=19% Similarity=0.332 Sum_probs=94.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.++.++|.++++...||+|.+ +++|+++..+|...+.......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~---------~~~G~v~~~~l~~~~~~~~~~~----------------- 55 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGG---------KLVGIVTEKDIADALRSFRPLV----------------- 55 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECC---------EEEEEEchHHHHHhhhhhhhcc-----------------
Confidence 56789999999999999999999999999863 8999999999987422110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.. .+...+...++.++|+.
T Consensus 56 ------------------------------------------------------~~~--~~~~~~~~~~~~~~~~~---- 75 (121)
T cd04633 56 ------------------------------------------------------RDR--HQERRIRNLPVSDIMTR---- 75 (121)
T ss_pred ------------------------------------------------------cch--hhhhhhhccCHHHHccC----
Confidence 000 01122355678888865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+||+.++++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 4889999999999999999999999999996 69999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=89.67 Aligned_cols=109 Identities=23% Similarity=0.354 Sum_probs=91.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.+|.+.|.+++....||.|.+ +|+|+++..++..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDG---------RPLGIVTERDILRLLASG--------------------- 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEeHHHHHHHHhcC---------------------
Confidence 56789999999999999999999999999873 899999999998741100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. + .++++.++|..
T Consensus 52 -------------------------------------------------------~------~--~~~~v~~~~~~---- 64 (111)
T cd04611 52 -------------------------------------------------------P------D--LQTPVGEVMSS---- 64 (111)
T ss_pred -------------------------------------------------------C------C--CCcCHHHhcCC----
Confidence 0 0 24567788755
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+++.+.+++++.+++.+|.+++.+.+||+|. +|++.|+||++++++
T Consensus 65 ~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 65 PLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 4888999999999999999999999999997 468999999999875
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=93.17 Aligned_cols=123 Identities=19% Similarity=0.302 Sum_probs=95.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|.++|.++++...||+|.+. ++++|+|+-.++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~-------~~~~G~v~~~dl~~~~~~~~~~~~~--------------- 59 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT-------GKLVGIITATDILKYLGGGEKFNKI--------------- 59 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC-------CEEEEEEEHHHHHHHhhccchhccc---------------
Confidence 568899999999999999999999999998752 3899999999998754322111100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
++.. . .....+++++++...
T Consensus 60 --------------------------------------------~~~~-------~------~~~~~~~~~~~~~~~--- 79 (125)
T cd04631 60 --------------------------------------------KTGN-------G------LEAINEPVRSIMTRN--- 79 (125)
T ss_pred --------------------------------------------cccc-------c------chhhhcCHHHHhcCC---
Confidence 0000 0 112346688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |.+.|+||..+|++
T Consensus 80 -~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 80 -VITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred -ceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 8899999999999999999999999999963 68999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=91.62 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=94.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|.+.|.++++...||+|.+ +++|+++..++..|...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~i~~~~l~~~~~~~~~-~----------------- 54 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRG---------KLVGIVTDRDLKLASPSKAT-T----------------- 54 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCC---------eEEEEEeHHHHHHhhhcccc-c-----------------
Confidence 56789999999999999999999999999873 89999999999875211000 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. ...++. ....+.++.++|...
T Consensus 55 ---------~----------------------------------------~~~~~~------~~~~~~~~~~~~~~~--- 76 (122)
T cd04585 55 ---------L----------------------------------------DIWELY------YLLSKIKVSDIMTRD--- 76 (122)
T ss_pred ---------c----------------------------------------cchhhh------hhhcccCHHHhccCC---
Confidence 0 000111 012456788998764
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++..|.+++.+++||+|. +|++.|+||+.++++
T Consensus 77 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 77 -PITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred -CeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 889999999999999999999999999996 469999999999986
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=89.74 Aligned_cols=102 Identities=16% Similarity=0.298 Sum_probs=87.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++.+.|.++++..+||.|.+ +++|+|+..++.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~Giv~~~~l~~--------~~---------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDG---------KLVGIITSRDVRR--------AH---------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEehHHhhc--------cc----------------
Confidence 56789999999999999999999999999843 8999999888865 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.++.++++|..
T Consensus 49 -----------------------------------------------------------------~~~~~~~~~~~---- 59 (105)
T cd04599 49 -----------------------------------------------------------------PNRLVADAMTR---- 59 (105)
T ss_pred -----------------------------------------------------------------ccCCHHHHccC----
Confidence 12346777754
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
++..+..++++.+++.+|.+++.+.+||+|. +++.|+||+.+++
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 60 EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 4889999999999999999999999999995 6999999999987
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=89.31 Aligned_cols=106 Identities=25% Similarity=0.361 Sum_probs=89.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.++.+.|.++++...||+|.+ ++++|+|+..++..+. .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~------~----------------- 51 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD--------NKLLGIVSLESLEQAY------K----------------- 51 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC--------CcEEEEEEHHHHHHHh------h-----------------
Confidence 46788999999999999999999999999875 3899999999997630 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+++.++|...
T Consensus 52 -----------------------------------------------------------------~~~~v~~~~~~~--- 63 (109)
T cd04583 52 -----------------------------------------------------------------EAKSLEDIMLED--- 63 (109)
T ss_pred -----------------------------------------------------------------cCCcHhHhhcCC---
Confidence 013466777554
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 64 -~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 64 -VFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred -ceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 7889999999999999999999999999974 69999999999875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=91.08 Aligned_cols=110 Identities=20% Similarity=0.362 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.++++.|.+++....||.|.+ +|+|+|+..++..|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~~-------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE---------KPVGIITERDLVKKVVSRN-------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC---------EEEEEEEHHHHHHHHhhcc--------------------
Confidence 56789999999999999999999999999965 8999999999998632110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+.++.++|..
T Consensus 53 --------------------------------------------------------------~~~~~~~~~~~~~~---- 66 (112)
T cd04802 53 --------------------------------------------------------------LKPREVPVGEVMST---- 66 (112)
T ss_pred --------------------------------------------------------------CCcccCCHHHhcCC----
Confidence 00123467888854
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|.+ ++.|+||+.+|++
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 67 PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 48889999999999999999999999999953 8999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=92.07 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=86.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|.+.|.++++..+||+|.+.. .++++|+|+..++.. ..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~-----~~~~~G~v~~~dl~~--------~~---------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS-----GGKLLGIVTSRDIDF--------LT---------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc-----CCEEEEEEEhHHhhh--------hh----------------
Confidence 4578899999999999999999999999986200 038999999877643 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. .+++|+++|...
T Consensus 54 --------------------------------------------------------------~--~~~~v~~~~~~~--- 66 (114)
T cd04602 54 --------------------------------------------------------------D--SETPLSEVMTPR--- 66 (114)
T ss_pred --------------------------------------------------------------c--cCCCHHHhcCCC---
Confidence 0 124588888554
Q ss_pred CceEecC--CCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVAT--DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~--~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+.++.. +.++.+++.+|.+++.+.+||+|. ++++.|+||+.++++
T Consensus 67 -~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 67 -EVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred -ceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 556655 999999999999999999999986 469999999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-11 Score=88.64 Aligned_cols=108 Identities=18% Similarity=0.333 Sum_probs=90.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++|+.+|.+.|.++++...||.|.+ +|+|+|...++..+ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~~l~~~-------~~---------------- 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDG---------KLVGIVTLSDIAHA-------IA---------------- 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHH-------Hh----------------
Confidence 56789999999999999999999999999874 89999999999874 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+....+++.+++..
T Consensus 50 --------------------------------------------------------------~~~~~~~v~~~~~~---- 63 (110)
T cd04588 50 --------------------------------------------------------------RGLELAKVKDVMTK---- 63 (110)
T ss_pred --------------------------------------------------------------ccccccCHHHHhcC----
Confidence 00011557777753
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..|.++.++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 64 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 64 DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 58999999999999999999999999999973 69999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-11 Score=89.57 Aligned_cols=110 Identities=20% Similarity=0.376 Sum_probs=92.0
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a 136 (297)
.+.+.+++++.+|.+.+.++++...||+|.+ ++++|+|+..++..-.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~--------~~~~G~v~~~dl~~~~~~----------------------- 51 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK--------KRLVGIITRYDVLSYALE----------------------- 51 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC--------CCEEEEEEHHHHHHhhhh-----------------------
Confidence 5778999999999999999999999999875 389999999999761000
Q ss_pred ccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCC
Q 022403 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (297)
Q Consensus 137 ~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaP 216 (297)
.+.+.++++.++|...
T Consensus 52 ------------------------------------------------------------~~~~~~~~i~~~~~~~---- 67 (113)
T cd04615 52 ------------------------------------------------------------SEELKDAKVREVMNSP---- 67 (113)
T ss_pred ------------------------------------------------------------hhhhcCCcHHHhccCC----
Confidence 0223456788888654
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..++.++++.+++.+|.+++.+++||+|.+ |++.|+||+.++++
T Consensus 68 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 68 VITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 8889999999999999999999999999974 69999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=89.74 Aligned_cols=110 Identities=21% Similarity=0.323 Sum_probs=88.7
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++++.++.++|+.+|.+.|.++++...||+|.+ +++|+|+..++..++.+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~dl~~~~~~~~------------------- 52 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG---------RVVGSIDESDLLDALIEGK------------------- 52 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEeeCC---------eeEEEEeHHHHHHHHhccc-------------------
Confidence 467889999999999999999999999999863 8999999999998521110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+++.++|+.
T Consensus 53 ----------------------------------------------------------------~~~~~~~~~~~~~--- 65 (110)
T cd04609 53 ----------------------------------------------------------------AKFSLPVREVMGE--- 65 (110)
T ss_pred ----------------------------------------------------------------cccCcCHHHHhcC---
Confidence 0013567788854
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++..++.++++.+++.+|.+ + +.+||||. ++++.|+||+++|+++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY 110 (110)
T ss_pred -CCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence 48889999999999999988 3 35788986 4799999999999864
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-11 Score=88.76 Aligned_cols=110 Identities=27% Similarity=0.373 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+...+..++++.+|.+.|.++++...||.|.+ ++|+|+|+..++..++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~~l~~~~~~---------------------- 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD--------ERPIGIVTERDIVRAVAA---------------------- 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC--------CCEEEEeeHHHHHHHHhc----------------------
Confidence 45778999999999999999999999999986 389999999999874211
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+++++++|..
T Consensus 52 --------------------------------------------------------------~~~~~~~v~~~~~~---- 65 (112)
T cd04624 52 --------------------------------------------------------------GIDLDTPVSEIMTR---- 65 (112)
T ss_pred --------------------------------------------------------------cCCCccCHHHhccC----
Confidence 00124568888764
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+..++++.+++.+|.+++.+.+||+|.. |++.|+||.+++++
T Consensus 66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 66 DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred CCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 48999999999999999999999999999974 68999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-11 Score=88.56 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=89.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++|+.+|.+.|.++++...||.|.+. ++++|+++..++..+..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~-------~~~~G~v~~~~l~~~~~~---------------------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL-------DNIIGVVHVKDLLRALAE---------------------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC-------ceEEEEEEHHHHHHHHHc----------------------
Confidence 578899999999999999999999999998752 289999999999874100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. ...+.+.++++
T Consensus 53 --------------------------------------------------------------~-~~~~~~~~~~~----- 64 (111)
T cd04590 53 --------------------------------------------------------------G-EEDLDLRDLLR----- 64 (111)
T ss_pred --------------------------------------------------------------C-CCcCCHHHHhc-----
Confidence 0 00145666653
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|+..+..++++.+++.+|.+++.+.+||+|. +|++.|+||++++++
T Consensus 65 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 65 PPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred CCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 4678899999999999999999999999996 468999999999875
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=111.57 Aligned_cols=122 Identities=12% Similarity=0.149 Sum_probs=99.3
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
.++|..+-.. ..+++.+++++|+.+|++.|.+++....||+|.+ ++++|+|+..|+..++.+
T Consensus 196 ~~~V~~im~~-~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~--------g~~iG~vt~~dl~~~~~~--------- 257 (321)
T PRK11543 196 LNKVHHLMRR-DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ--------QQVQGVFTDGDLRRWLVG--------- 257 (321)
T ss_pred HhHHHHHhcc-CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEecHHHHHHHHhC---------
Confidence 3555555443 1248999999999999999999999999999976 489999999998764210
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
+...+
T Consensus 258 ---------------------------------------------------------------------------~~~~~ 262 (321)
T PRK11543 258 ---------------------------------------------------------------------------GGALT 262 (321)
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 00124
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++|+++|... +..+.+++++.+++.+|.++++.++||||.+ ++++|+||+.+|++
T Consensus 263 ~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 TPVNEAMTRG----GTTLQAQSRAIDAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQ 317 (321)
T ss_pred CcHHHhcCCC----CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHh
Confidence 5699999765 8889999999999999999999999999964 59999999999985
|
|
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=90.36 Aligned_cols=111 Identities=19% Similarity=0.358 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++.+.|.+++....||.|.+ +++|+|+..+|...+++. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~dl~~~~~~~---~----------------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGN---------KLVGIFTSKDIALRVVAQ---G----------------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECC---------EEEEEEEhHHHHHHHHhc---C-----------------
Confidence 67889999999999999999999999999863 899999999998631110 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. +. .++++.++|+..
T Consensus 53 -------------------------------------------------------~------~~-~~~~v~~i~~~~--- 67 (113)
T cd04587 53 -------------------------------------------------------L------DP-ESTLVERVMTPN--- 67 (113)
T ss_pred -------------------------------------------------------C------Cc-CcCCHHHhcCCC---
Confidence 0 11 135688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|.+ +++.|+||..++++
T Consensus 68 -~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 68 -PVCATSDTPVLEALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred -CeEEcCCCCHHHHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 8889999999999999999999999999973 68999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=90.32 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=85.3
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a 136 (297)
-+.+++++|+.+|.+.|.++++...||+|.+ +++|+|+..++..+ .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~~l~~~-------~------------------ 48 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDYN---------KFLGAVYLKDIENA-------T------------------ 48 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEECC---------EEEEEEEHHHHhhh-------c------------------
Confidence 4778999999999999999999999999863 89999998887652 0
Q ss_pred ccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCC
Q 022403 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (297)
Q Consensus 137 ~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaP 216 (297)
..++.++|...
T Consensus 49 -----------------------------------------------------------------~~~~~~~~~~~---- 59 (104)
T cd04594 49 -----------------------------------------------------------------YGDVVDYIVRG---- 59 (104)
T ss_pred -----------------------------------------------------------------ccchhhhhhcC----
Confidence 01255666543
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..|..+.++.+++.+|.+++.+.+||+| +|++.|+||+.++++
T Consensus 60 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 60 IPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 67899999999999999999999999998 469999999999875
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=89.29 Aligned_cols=111 Identities=21% Similarity=0.374 Sum_probs=90.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.+|.+.|.+++....||+|.+ +++|+|+..++....+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~i~~~~l~~~~~~~--------------------- 51 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEND---------RLVGIVTDRDIVVRAVAE--------------------- 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEhHHHHHHHhhc---------------------
Confidence 56889999999999999999999999999873 899999999987421100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+......+++++|...
T Consensus 52 -------------------------------------------------------------~~~~~~~~~~~~~~~~--- 67 (113)
T cd04622 52 -------------------------------------------------------------GRDPDTTTVGDVMTRG--- 67 (113)
T ss_pred -------------------------------------------------------------cCCcccCCHHHhccCC---
Confidence 0001123488888765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++..|.+++.+++||+|.+ +++.|+||+.++++
T Consensus 68 -~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 68 -VVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred -ccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 7889999999999999999999999999964 69999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=85.12 Aligned_cols=111 Identities=22% Similarity=0.355 Sum_probs=90.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++.+.|.+++....||+|.+ ++++|+++..+|+.+........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~G~v~~~~l~~~~~~~~~~~----------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD--------GRLVGIVTERDLLRALAEGGLDP----------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC--------CCEEEEEeHHHHHHHHHhccCCc-----------------
Confidence 56789999999999999999999999999985 38999999999998632110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...+.+++. .
T Consensus 57 ------------------------------------------------------------------~~~~~~~~~----~ 66 (113)
T cd02205 57 ------------------------------------------------------------------LVTVGDVMT----R 66 (113)
T ss_pred ------------------------------------------------------------------cccHHHHhc----C
Confidence 000445554 3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+..++++.+++..|.+++.+.+||+|.+ +++.|+||+.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 67 DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred CceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 58889999999999999999999999999985 69999999999876
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=89.53 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=94.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.+|.+.|.++++...||+|.+ +++|+|+..++...+.+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~~l~~~~~~~~~~~----------------- 55 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN---------ELVGVISDRDYLKAISPFLGTA----------------- 55 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCC---------eEEEEEEHHHHHHHHHHHhccc-----------------
Confidence 56889999999999999999999999999963 8999999999987422100000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.....++. ..++++.++|...
T Consensus 56 ------------------------------------------------~~~~~~~~--------~~~~~~~~~~~~~--- 76 (122)
T cd04637 56 ------------------------------------------------GETEKDLA--------TLNRRAHQIMTRD--- 76 (122)
T ss_pred ------------------------------------------------cchHHHHH--------HHHhHHHHhhcCC---
Confidence 00000110 0145688888765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++.+..++++.+++.+|.+++.+++||+|.+ ++++|+||.++++++
T Consensus 77 -~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~~ 122 (122)
T cd04637 77 -PITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLKY 122 (122)
T ss_pred -CeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhhC
Confidence 8999999999999999999999999999864 699999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=87.07 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=90.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.++.+.+.++++...||.|.+ ++++|+|+..++...+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~------~---------------- 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED--------GRLVGIVTSWDISKAV------A---------------- 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC--------CcEEEEEeHHHHHHHH------h----------------
Confidence 467889999999999999999999999999875 3899999999987620 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ ...+++++|..
T Consensus 52 ---------------------------------------------------------------~--~~~~~~~~~~~--- 63 (110)
T cd04605 52 ---------------------------------------------------------------R--DKKSVEDIMTR--- 63 (110)
T ss_pred ---------------------------------------------------------------h--CccCHHHhcCC---
Confidence 0 01236666643
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|+..+..++++.+++.+|.+++.+.+||++.+ |++.|+||+.++++
T Consensus 64 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 64 -NVITATPDEPIDVAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 58899999999999999999999999999974 69999999999865
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-11 Score=89.66 Aligned_cols=103 Identities=26% Similarity=0.400 Sum_probs=85.6
Q ss_pred ecCCCCHHHHHHHHHHCC-----CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 60 IMADTTIPDAVKILSECN-----ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 60 I~~d~sI~dAvkiLse~n-----IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
+++++|+.++.+.|.+++ +...||+|.+ ++|+|+|+..++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~--------~~~~G~v~~~~l~~--------~---------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE--------GRLLGVVSLRDLLL--------A---------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC--------CCEEEEEEHHHHhc--------C----------------
Confidence 578999999999999888 5678999875 38999999877754 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. .+++++++++..
T Consensus 50 ---------------------------------------------------------------~--~~~~v~~~~~~~-- 62 (109)
T cd04606 50 ---------------------------------------------------------------D--PDTPVSDIMDTD-- 62 (109)
T ss_pred ---------------------------------------------------------------C--CcchHHHHhCCC--
Confidence 0 134577777554
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+..+.++.++.+++.+|.+++.+.+||+|.+ +++.|+||.+++++.|
T Consensus 63 --~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~~ 109 (109)
T cd04606 63 --VISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDVI 109 (109)
T ss_pred --CeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhhC
Confidence 8899999999999999999999999999964 6999999999999864
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-11 Score=106.15 Aligned_cols=115 Identities=25% Similarity=0.393 Sum_probs=97.8
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
.++||.+++|++|.+++++|.++||+--||++.+ +.+|=|+-.+|+.-.|+.-
T Consensus 72 ~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~---------k~VGsItE~~iv~~~le~~------------------ 124 (187)
T COG3620 72 HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED---------KVVGSITENDIVRALLEGM------------------ 124 (187)
T ss_pred cCCeeEECchhhHHHHHHHHHHcCCccCceeeCC---------eeeeeecHHHHHHHHhccc------------------
Confidence 6899999999999999999999999999999997 8999999999999322221
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
|...+-+|++||+.-
T Consensus 125 ----------------------------------------------------------------e~i~~~~vr~vM~e~- 139 (187)
T COG3620 125 ----------------------------------------------------------------ESIRSLRVREVMGEP- 139 (187)
T ss_pred ----------------------------------------------------------------cchhhhhHHHHhcCC-
Confidence 333567899999876
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|-.|++|.++.-+-.||..| ..|-|++ +|+++||||+.||++.+.+.
T Consensus 140 ---fP~Vs~~~~l~vI~~LL~~~--~AVlV~e--~G~~vGIITk~DI~k~~~~~ 186 (187)
T COG3620 140 ---FPTVSPDESLNVISQLLEEH--PAVLVVE--NGKVVGIITKADIMKLLAGT 186 (187)
T ss_pred ---CCcCCCCCCHHHHHHHHhhC--CeEEEEe--CCceEEEEeHHHHHHHHhcc
Confidence 99999999998888888554 4677887 67999999999999998764
|
|
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-11 Score=87.92 Aligned_cols=106 Identities=21% Similarity=0.371 Sum_probs=87.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.++.++++.++.+.|.++++.+.||.|.+ ++++|+|+..+|.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~--------~~---------------- 50 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD--------GKLVGIVTNRDLRF--------ET---------------- 50 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC--------CEEEEEEEhhHeee--------cc----------------
Confidence 56889999999999999999999999999875 38999999877743 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ .++++.++|...
T Consensus 51 --------------------------------------------------------------~--~~~~v~~~~~~~--- 63 (110)
T cd04601 51 --------------------------------------------------------------D--LDKPVSEVMTPE--- 63 (110)
T ss_pred --------------------------------------------------------------c--CCCCHHHhcccC---
Confidence 0 134577887653
Q ss_pred CceEecC-CCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~-~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.. ++++.+++.+|.+++.+.+||+|. ++++.|+||++++++
T Consensus 64 -~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 64 -NLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred -ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 455666 999999999999999999999996 469999999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=87.19 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=91.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.++.+.|.++++...||.|.+ ++++|+|...+|...+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~~i~~~~~~~--------------------- 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED--------GRLVGIFTDGDLRRALEKG--------------------- 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC--------CCEEEEechHHHHHHHhcc---------------------
Confidence 55678999999999999998889999999976 3899999988887731100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+..+++.++|...
T Consensus 54 --------------------------------------------------------------~~~~~~~v~~~~~~~--- 68 (114)
T cd04604 54 --------------------------------------------------------------LDILTLPVADVMTRN--- 68 (114)
T ss_pred --------------------------------------------------------------CccccCCHHHhhccC---
Confidence 112335688888765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++...+||+|.+ +++.|+||..++++
T Consensus 69 -~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 69 -PKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 7789999999999999999999999999974 69999999999975
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=87.96 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=88.8
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|.+.+.+++....||.|.+ ++++|+|...++.. ..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~--------~~---------------- 50 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK--------NKVVGIVTSKDVAG--------KD---------------- 50 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC--------CeEEEEecHHHHhc--------cc----------------
Confidence 57889999999999999999999999999865 48999998887753 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+.+++++|...
T Consensus 51 -----------------------------------------------------------------~~~~v~~~~~~~--- 62 (108)
T cd04596 51 -----------------------------------------------------------------PDTTIEKVMTKN--- 62 (108)
T ss_pred -----------------------------------------------------------------ccccHHHHhcCC---
Confidence 123477777543
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+++++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 63 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 63 -PITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred -CeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 7889999999999999999999999999964 69999999999875
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-10 Score=84.75 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=89.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+++++++.++++.|.++++...||+|.+ +++|+++..+|.... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~------~~---------------- 50 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG---------RLVGIVTLADIRRVP------AE---------------- 50 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCC---------eEEEEEEHHHHHHHH------hc----------------
Confidence 46789999999999999999999999999874 899999999987620 00
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
......++.++|...
T Consensus 51 --------------------------------------------------------------~~~~~~~~~~~~~~~--- 65 (111)
T cd04612 51 --------------------------------------------------------------GREATVLVGDVMTRD--- 65 (111)
T ss_pred --------------------------------------------------------------CcccccCHHHhccCC---
Confidence 000014567777543
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|. ++++.|+||..+|++
T Consensus 66 -~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 66 -PVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred -CeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 899999999999999999999999999997 469999999999975
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=85.42 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=86.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+..++++.+|++.|.++++...||.|.+ ++++|+++..+|... .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~--------g~~~Giv~~~dl~~~--------~---------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD--------GQPLGFVTRREAARA--------S---------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC--------CCEEEEEeHHHHHHh--------c----------------
Confidence 45788999999999999999999999999865 389999999888751 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+.+.++|..
T Consensus 50 ------------------------------------------------------------------~~~~~~~~~~---- 59 (106)
T cd04582 50 ------------------------------------------------------------------GGCCGDHAEP---- 59 (106)
T ss_pred ------------------------------------------------------------------ccchhhhccc----
Confidence 0114455533
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++..+..++++.+++.+|.+++...+||+|.+ +++.|+||+++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 60 FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIADY 106 (106)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhcC
Confidence 25678999999999999999999999999974 689999999999863
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=114.31 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=107.6
Q ss_pred HHHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHH
Q 022403 34 QETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (297)
Q Consensus 34 ~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe 113 (297)
.+...+.+..+++..+- ..+++.+.+++|+.+|.++|.++++.+.||+|.+ ++++|||+..|+..
T Consensus 79 ~~~q~~~l~~VKv~~iM---i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~--------gklvGIVT~rDL~~---- 143 (479)
T PRK07807 79 IDVVAEVVAWVKSRDLV---FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE--------GRPVGVVTEADCAG---- 143 (479)
T ss_pred HHHHHHHHhhccccccc---ccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC--------CeEEEEEeHHHHhc----
Confidence 45566677788886553 3578899999999999999999999999999965 38999999888622
Q ss_pred HHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHH
Q 022403 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV 193 (297)
Q Consensus 114 ~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~ 193 (297)
.
T Consensus 144 ----~--------------------------------------------------------------------------- 144 (479)
T PRK07807 144 ----V--------------------------------------------------------------------------- 144 (479)
T ss_pred ----C---------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 194 L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+ .+++|+++|+.. ++++.++.++.+++.+|.+++++.+||||.+ ++++|+||+++|++.+...
T Consensus 145 ----~--~~~~V~diMt~~----~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 145 ----D--RFTQVRDVMSTD----LVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT 207 (479)
T ss_pred ----c--cCCCHHHhccCC----ceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC
Confidence 0 125699999764 9999999999999999999999999999974 5999999999999977654
|
|
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-10 Score=84.58 Aligned_cols=105 Identities=18% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.++.++++.++++.+.+++....||.|.+ +|+|++...+|.. ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---------~~~g~v~~~~l~~--------~~--------------- 49 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNG---------KVVGIVSARDLLG--------KD--------------- 49 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECC---------EEEEEEEHHHhhc--------cC---------------
Confidence 467889999999999999999998899999863 8999999888754 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.+.+++++|...
T Consensus 50 ------------------------------------------------------------------~~~~~~~~~~~~-- 61 (107)
T cd04610 50 ------------------------------------------------------------------PDETVEEIMSKD-- 61 (107)
T ss_pred ------------------------------------------------------------------ccccHHHhCCCC--
Confidence 123477887554
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+++||+|.+ |++.|+||..++++
T Consensus 62 --~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 62 --LVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred --CeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 7888999999999999999999999999974 69999999999985
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=112.36 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=118.1
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh-ccc-------
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF-SVG------- 125 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~-~~~------- 125 (297)
..+++.+++++++.+|.++|.++++...||+|.+ ++++|+|+..||..+.++..+...-+. .++
T Consensus 75 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~ 146 (546)
T PRK14869 75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRT 146 (546)
T ss_pred CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHh
Confidence 3578999999999999999999999999999976 389999999999999887653211000 000
Q ss_pred --------cccccc--cccccccchhh---hhhccCCcchhhhhhH----Hhhhhh-----hhccchhccc-CC--CCCc
Q 022403 126 --------TATAAG--VGTGTVGALGA---LALGMTGPAAVAGLTV----AAAGAA-----VAGGLAAEKG-AG--KDAP 180 (297)
Q Consensus 126 --------~~~a~g--~g~~a~~~~~a---~al~~~~P~~~~~~~~----~a~~aa-----~~~~~~~d~~-~~--~~~~ 180 (297)
... .. .|.-.+|+... ......|...+.|-.. +|+-+- +.||.-.+.. ++ +...
T Consensus 147 L~~~~l~~~~~-~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~ 225 (546)
T PRK14869 147 LDGEVLVGAEE-DKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENG 225 (546)
T ss_pred cCcEEEecCcc-cccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCC
Confidence 000 00 11111111110 0001111111111111 111111 1122221100 00 0000
Q ss_pred chhhhhhhhHHHHhhhcCCCCccchhhHhh-hccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHH
Q 022403 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIK-SYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 259 (297)
Q Consensus 181 ~~~~~~~~df~~~L~~~e~~k~tkV~dI~~-s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSa 259 (297)
.+.=....|.|+.... ...+++|+++|+ .. ++.+++++++.++..+|.+++.+++||||.+ |+++|+||..+
T Consensus 226 i~ii~t~~dt~~t~~~--l~~~~~V~~iM~~~~----~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~d 298 (546)
T PRK14869 226 VTVISTPYDTFTTARL--INQSIPVSYIMTTED----LVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-GKVVGVISRYH 298 (546)
T ss_pred CeEEEecccHHHHHHH--hhcCCCHHHhccCCC----cEEECCCCcHHHHHHHHHhcCCCceEEEcCC-CCEEEEEEHHH
Confidence 1111122345555433 346889999998 55 8999999999999999999999999999974 69999999999
Q ss_pred HHHHHh
Q 022403 260 VVQGLE 265 (297)
Q Consensus 260 VI~~L~ 265 (297)
+++...
T Consensus 299 l~~~~~ 304 (546)
T PRK14869 299 LLSPVR 304 (546)
T ss_pred hhcccc
Confidence 998654
|
|
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-10 Score=91.55 Aligned_cols=142 Identities=23% Similarity=0.334 Sum_probs=96.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++++.|.++++.+.||+|.+ +++|+|+..++..++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~---------~~~G~v~~~dl~~~~~~~~~~~~---------------- 56 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGG---------KLVGIVSESDILKLLVTHDPSGN---------------- 56 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECC---------eEEEEecHHHHHHHHHhccCccc----------------
Confidence 56889999999999999999999999999862 89999999999775432210000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+..+... .+ .+. +........++.... +....+++.++|...
T Consensus 57 ---------~~~~~~~-------------------~~--~~~--~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~--- 98 (143)
T cd04634 57 ---------LWLPSPL-------------------EL--IEL--PLREFINWEETKRAL---TDAGKMKVRDIMTKK--- 98 (143)
T ss_pred ---------cccCCcc-------------------ee--eec--cchheeehHHHHHHH---HHHhcCCHHHHcCCC---
Confidence 0000000 00 000 000000011111111 112456788888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+..+..++++.+++.+|.+++.+++||+|. +++.|+||+++++++
T Consensus 99 -~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~~ 143 (143)
T cd04634 99 -VITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIEG 143 (143)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhcC
Confidence 889999999999999999999999999996 689999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=111.01 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=101.0
Q ss_pred CCCcEEecCCCCHHHHHHHHHH-----CCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSE-----CNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTAT 128 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse-----~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~ 128 (297)
..+++.++.++|+.+|++.+.+ +++...||+|.+ ++++|+|+..|++. +.
T Consensus 138 t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~--------~~l~GvV~l~dLl~--------a~--------- 192 (449)
T TIGR00400 138 TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES--------KHLKGVLSIRDLIL--------AK--------- 192 (449)
T ss_pred cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC--------CeEEEEEEHHHHhc--------CC---------
Confidence 4678999999999999999976 678888998875 38999999888765 10
Q ss_pred ccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhH
Q 022403 129 AAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI 208 (297)
Q Consensus 129 a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI 208 (297)
.+++|+++
T Consensus 193 ------------------------------------------------------------------------~~~~v~~i 200 (449)
T TIGR00400 193 ------------------------------------------------------------------------PEEILSSI 200 (449)
T ss_pred ------------------------------------------------------------------------CCCcHHHH
Confidence 13469999
Q ss_pred hhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhh
Q 022403 209 IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (297)
Q Consensus 209 ~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~ 274 (297)
|+.. ++.+.+++++.+++.+|.+|+++.+||||.+ |+++|+||..++++.+.+....|.+.
T Consensus 201 m~~~----~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~~ed~~~ 261 (449)
T TIGR00400 201 MRSS----VFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEATEDFYM 261 (449)
T ss_pred hCCC----CeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhhHHHHHH
Confidence 9775 8889999999999999999999999999974 69999999999999998877665544
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=112.17 Aligned_cols=116 Identities=11% Similarity=0.125 Sum_probs=98.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+|+|+.||.++|.++++.+.||+|.+. +.++++|+|+..||.. .
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-----~~GklvGIVT~~DL~~--------v---------------- 158 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGT-----MGSKLLGYVTKRDWDF--------V---------------- 158 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-----cCCeEEEEEEHHHHhh--------c----------------
Confidence 5678999999999999999999999999998631 1248999999988854 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. ..+++|.++|+..
T Consensus 159 ---------------------------------------------------------------~-~~~~~V~eIMt~~-- 172 (505)
T PLN02274 159 ---------------------------------------------------------------N-DRETKLSEVMTSD-- 172 (505)
T ss_pred ---------------------------------------------------------------c-ccCCcHHHHhccC--
Confidence 0 1257799999642
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+++.+.+++++.+++.+|.+++++++||||. +++++|+||++++++.+.-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence 23789999999999999999999999999987 4699999999999999975
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=113.58 Aligned_cols=112 Identities=12% Similarity=0.202 Sum_probs=93.4
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
..+.+++|+.||+++|.++++.+.||+|... ..++++|||+..||.. ..
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~-----~~gkLvGIVT~~DLr~--------~~------------------ 156 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGT-----AHGKLLGIVTSRDYRI--------SR------------------ 156 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC-----cCCEEEEEEEcHHhhc--------cc------------------
Confidence 5899999999999999999999999999621 1248999999988853 10
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
...+++|++||+.. .++
T Consensus 157 -------------------------------------------------------------~~~~~~V~dIMt~~--~~~ 173 (502)
T PRK07107 157 -------------------------------------------------------------MSLDTKVKDFMTPF--EKL 173 (502)
T ss_pred -------------------------------------------------------------cCCCCCHHHHhCCC--CCe
Confidence 01346799999742 248
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+.++++.++.+++.+|.+|++++|||||. +++++|+||..++++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcc
Confidence 89999999999999999999999999996 46899999999999864
|
|
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=82.30 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=92.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..++.++++.+|++.|.+++....||+|.+ ++++|+|...++....-....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~~~~~~------------------- 54 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE--------GRLVGIVTDRDLRDASPSPFT------------------- 54 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEHHHHHHHhhhhcc-------------------
Confidence 56789999999999999999999999999985 389999999998763110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.++-..+ ......+++++|...
T Consensus 55 ----------------------------------------------------~~~~~~~---~~~~~~~v~~~~~~~--- 76 (121)
T cd04584 55 ----------------------------------------------------TLSEHEL---YLLLKMPVKEIMTKD--- 76 (121)
T ss_pred ----------------------------------------------------cchhhhh---hhhcCcCHHHHhhCC---
Confidence 0000000 112346688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|..++...+||+|. +++.|++|..++++
T Consensus 77 -~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 77 -VITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 788999999999999999999999999985 68999999999875
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.3e-10 Score=107.00 Aligned_cols=127 Identities=16% Similarity=0.225 Sum_probs=101.6
Q ss_pred HHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 36 ~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
.+-..+..++|..+-. .+++.+.+++|+.+|++.|.++++...||+|.+ ++++|+|+..||..++.+.
T Consensus 327 ~~~~~l~~~~v~~im~---~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~- 394 (454)
T TIGR01137 327 TVFDVLKNATVKDLHL---PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA--------GKVLGSVTLRELLSALFAG- 394 (454)
T ss_pred cHHHHhccCCHHHhCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHHhcc-
Confidence 3566699999988764 368999999999999999999999999999875 3899999999998742210
Q ss_pred HHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhh
Q 022403 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (297)
Q Consensus 116 e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~ 195 (297)
T Consensus 395 -------------------------------------------------------------------------------- 394 (454)
T TIGR01137 395 -------------------------------------------------------------------------------- 394 (454)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+...+++|.++|... +..|.+++++.+++.+|.+++ +|||+. ++++.|+||++++++.|
T Consensus 395 --~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 395 --KANPDDAVSKVMSKK----FIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --CCCcCCCHHHhcCCC----CeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 001235789999643 889999999999999998864 355544 46999999999999986
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-10 Score=114.47 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=107.6
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+.+++.+.+||.+|.+.|.++|+.|--|+|++. ..+|||+-.|+..-++-
T Consensus 156 ~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~--------~~~GIvT~~dl~~~v~~-------------------- 207 (610)
T COG2905 156 TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG--------PLLGIVTRKDLRSRVIA-------------------- 207 (610)
T ss_pred cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCC--------CccceeehHHHHHHHHh--------------------
Confidence 45668999999999999999999999777788763 68999999888873211
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
| ..-+.+||.++|++-
T Consensus 208 --------------------------------------~-------------------------g~~~~~~V~evmT~p- 223 (610)
T COG2905 208 --------------------------------------D-------------------------GRSKTQKVSEVMTSP- 223 (610)
T ss_pred --------------------------------------c-------------------------CCCcccchhhhhccC-
Confidence 1 112578999999987
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhcccccccc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~lsel 284 (297)
.+.|+..+-+++||++|+++|||+|||.+ +|++.||||-++|++.+.++.=.--.+..-.++|.||
T Consensus 224 ---~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~sI~el 289 (610)
T COG2905 224 ---VISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFSQNSIVLVKRIARASSIEEL 289 (610)
T ss_pred ---ceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhCCCceeehHHhhhhhhHHHH
Confidence 99999999999999999999999999999 5689999999999999987654323333333444444
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=107.76 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=101.6
Q ss_pred HHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHH
Q 022403 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (297)
Q Consensus 38 n~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~ 117 (297)
.+....+++..+- ..+.+.+.+++|+.+|.++|.++++.+.||+|.+ +++|||+-.|+..
T Consensus 82 ae~v~~VKv~eim---~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g---------klvGIVT~rDL~~-------- 141 (475)
T TIGR01303 82 KQTVAFVKSRDLV---LDTPITLAPHDTVSDAMALIHKRAHGAAVVILED---------RPVGLVTDSDLLG-------- 141 (475)
T ss_pred HHHHhhcchhhcc---ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECC---------EEEEEEEHHHhhc--------
Confidence 3345566666442 3467899999999999999999999999998853 8999999888621
Q ss_pred HHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhc
Q 022403 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (297)
Q Consensus 118 a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~ 197 (297)
.
T Consensus 142 ~------------------------------------------------------------------------------- 142 (475)
T TIGR01303 142 V------------------------------------------------------------------------------- 142 (475)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+ .+++|+++|+.. ++++.+++++.+++.+|.+|+++.+||||. +++++|+||+.++++.....
T Consensus 143 ~--~~~~V~dIMt~~----litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 143 D--RFTQVRDIMSTD----LVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred C--CCCCHHHHccCC----ceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC
Confidence 0 125699999754 999999999999999999999999999996 46899999999999977655
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=89.08 Aligned_cols=114 Identities=13% Similarity=0.219 Sum_probs=81.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
.++.+.+++++.+|++.|.++++.+.||+|.+ ++++|+|+..|+..++........
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~--------g~l~Givt~~Dl~~~~~~~~~~~~---------------- 57 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD--------DFLEGILTLGDIQRFLFTNKTTRV---------------- 57 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHHHHHHhhcccccc----------------
Confidence 46889999999999999999999999999986 389999999999986422110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhh----
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKS---- 211 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s---- 211 (297)
....+.+ .-+...+.++|..
T Consensus 58 -------------------------------------------------~~~~~~~-------~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 58 -------------------------------------------------QPEDETK-------QTNTCLVSSVCTKGISY 81 (133)
T ss_pred -------------------------------------------------ccchhhc-------ccccccHHHHhhhhhhh
Confidence 0000000 0011234445532
Q ss_pred -ccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCC
Q 022403 212 -YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP 249 (297)
Q Consensus 212 -~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~ 249 (297)
..-.|++.+.+++++.+++.+|.+|+++++||+|.+++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence 11245889999999999999999999999999997653
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=106.05 Aligned_cols=115 Identities=17% Similarity=0.324 Sum_probs=97.0
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+++.+.+++|+.||.++|.++++...||+|.+.. .++++|+|+..|+.. ..
T Consensus 87 ~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~-----~~~lvGIVt~rDL~~--------~~-------------- 139 (450)
T TIGR01302 87 ISDPVTISPETTVADVLELMERKGISGIPVVEDGDM-----TGKLVGIITKRDIRF--------VK-------------- 139 (450)
T ss_pred ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC-----CCeEEEEEEHHHHhh--------hh--------------
Confidence 357899999999999999999999999999997521 138999999888753 10
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
+ .+++|+++|+.
T Consensus 140 ----------------------------------------------------------------~--~~~~V~dvm~~-- 151 (450)
T TIGR01302 140 ----------------------------------------------------------------D--KGKPVSEVMTR-- 151 (450)
T ss_pred ----------------------------------------------------------------c--CCCCHHHhhCC--
Confidence 0 13568899863
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+++.+..+.++.+++.+|.+++.+.+||||. +|++.|+||..+|++.+.
T Consensus 152 -~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 152 -EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK 201 (450)
T ss_pred -CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence 36889999999999999999999999999997 469999999999999875
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=82.00 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=85.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.++..+.+++++.++.+.+.+++....||+|... -.++|+|+|+..++..+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-----~~~~~~G~v~~~dl~~~-------~---------------- 53 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-----ESPRLVGYILRSQLVVA-------L---------------- 53 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCC-----CCCEEEEEEeHHHHHHH-------H----------------
Confidence 3678889999999999999999999999998730 00389999999888762 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. + +|..
T Consensus 54 --------------------------------------------------------~------~---------~m~~--- 59 (105)
T cd04591 54 --------------------------------------------------------K------N---------YIDP--- 59 (105)
T ss_pred --------------------------------------------------------H------H---------hccC---
Confidence 0 0 4433
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..++.++++.+++.+|.+++.+.+||++ +|++.|+||..++++
T Consensus 60 -~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 60 -SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred -CCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 478899999999999999999999999997 568999999999976
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=108.65 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=96.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+.+.+.+++|+.+|.+++.++++.+.||+|.+. +.++++|||+..||.. ..
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-----~~gkLvGIVt~~DL~~--------~~--------------- 155 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK-----VGGKLLGIVTSRDIDF--------VK--------------- 155 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-----cCCeEEEEEEHHHHhh--------cc---------------
Confidence 4568999999999999999999999999998741 1248999999988754 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
..+++|+++|+..
T Consensus 156 -----------------------------------------------------------------~~~~~V~diMt~~-- 168 (495)
T PTZ00314 156 -----------------------------------------------------------------DKSTPVSEVMTPR-- 168 (495)
T ss_pred -----------------------------------------------------------------cCCCCHHHhhCCc--
Confidence 0256799999752
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+++.+.++.++.+++.+|.+++++.+||||.+ +++.|+||++++++...
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRG 218 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhccc
Confidence 358999999999999999999999999999974 69999999999998754
|
|
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=81.71 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=88.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCC-CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~n-IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++..+++++++.+|++.+.+++ +...||+|.. +++|+|...++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~---------~~~G~v~~~~l~~~~~~~-------------------- 52 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDG---------RPVGLIMREALMELLSTP-------------------- 52 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECC---------eeEEEEEHHHHHHHHhch--------------------
Confidence 4556889999999999998887 8999999982 899999999987631100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
... +.+.+++|+++|...
T Consensus 53 ---------------------------------------------------~~~---------~~~~~~~v~~~~~~~-- 70 (119)
T cd04598 53 ---------------------------------------------------YGR---------ALYGKKPVSEVMDPD-- 70 (119)
T ss_pred ---------------------------------------------------hhH---------HHHcCCcHHHhcCCC--
Confidence 000 113456799999664
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCc---eeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLR---NVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~---rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.++.++.+++.+|.+++.+ ..|||+. +|++.|+||+.++++
T Consensus 71 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 71 --PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred --cEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 89999999999999999999865 4468876 479999999999875
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=95.13 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=92.4
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
++|..+-.. .++..+++++++.+|.+.|.++++...||+|.+ ++++|+|+..||..+...
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~--------g~~~Givt~~dl~~~~~~---------- 214 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN--------NQLVGVFTDGDLRRALLG---------- 214 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC--------CCEEEEEEcHHHHHHHhc----------
Confidence 566555442 127889999999999999999999999999976 389999999999874100
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
+...++
T Consensus 215 --------------------------------------------------------------------------~~~~~~ 220 (268)
T TIGR00393 215 --------------------------------------------------------------------------GGSLKS 220 (268)
T ss_pred --------------------------------------------------------------------------CCcccC
Confidence 001346
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEee
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYIT 256 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niIT 256 (297)
+|+++|... +.+|.+++++.+++.+|.+++.+++||+|.+ |++.|+|+
T Consensus 221 ~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 221 EVRDFMTLG----PKTFKLDALLLEALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred cHHHhCCCC----CeEECCCCcHHHHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 799998655 8899999999999999999999999999964 59999985
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-09 Score=105.09 Aligned_cols=111 Identities=19% Similarity=0.379 Sum_probs=95.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+..++|+.++.++|.++++...||+|.+ ++++|+|+..||.. ..
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~--------g~lvGiVt~~DL~~--------~~--------------- 143 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDEN--------GKLVGIITNRDVRF--------ET--------------- 143 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC--------CEEEEEEEHHHhhh--------cc---------------
Confidence 578999999999999999999999999999964 48999999998843 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ .+++|+++|+.
T Consensus 144 ---------------------------------------------------------------~--~~~~V~dim~~--- 155 (486)
T PRK05567 144 ---------------------------------------------------------------D--LSQPVSEVMTK--- 155 (486)
T ss_pred ---------------------------------------------------------------c--CCCcHHHHcCC---
Confidence 0 13468888861
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.|++.+..+.++.+++.+|.+++++.+||+|.. |++.|+||..++++.+.
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEE 205 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhh
Confidence 258899999999999999999999999999974 69999999999998874
|
|
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=98.24 Aligned_cols=133 Identities=14% Similarity=0.219 Sum_probs=104.8
Q ss_pred HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHH
Q 022403 37 LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (297)
Q Consensus 37 Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~ 114 (297)
+... |....|..+-. |..+++.++.++|+.++.+.+.+++....||++.+- |+++|+|...|+..+.
T Consensus 58 i~~vl~l~~~~V~diMt-pr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~-------d~iiGiv~~kDll~~~--- 126 (292)
T PRK15094 58 LEGVMDIADQRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPFM--- 126 (292)
T ss_pred HHHHhccCCCEEeEEcc-chHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC-------CcEEEEEEHHHHHhHh---
Confidence 5544 45567776654 245899999999999999999999999999998652 4899999999998621
Q ss_pred HHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHh
Q 022403 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (297)
Q Consensus 115 ~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L 194 (297)
..
T Consensus 127 ---~~--------------------------------------------------------------------------- 128 (292)
T PRK15094 127 ---RS--------------------------------------------------------------------------- 128 (292)
T ss_pred ---hc---------------------------------------------------------------------------
Confidence 00
Q ss_pred hhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 195 ~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.....+++++|+. | +.|..+.++.++|..|.+++.+.+||||. .|.+.||||..+|++.|.+-.
T Consensus 129 ----~~~~~~l~~l~r~----~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 129 ----DAEAFSMDKVLRQ----A-VVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred ----cCCcCCHHHHcCC----C-cCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCC
Confidence 0011236777742 3 36889999999999999999999999997 357999999999999998754
|
|
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=77.39 Aligned_cols=104 Identities=17% Similarity=0.322 Sum_probs=85.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+..++++.++.+.+.++++...||+|.+ ++++|+++-.++.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~v~~~~l~~--------~~---------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS--------GELVGIITRKDLLR--------NP---------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHh--------cc----------------
Confidence 67889999999999999999999999999875 38999999877754 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+++++.++|...
T Consensus 50 -----------------------------------------------------------------~~~~~~~~~~~~--- 61 (106)
T cd04638 50 -----------------------------------------------------------------EEEQLALLMTRD--- 61 (106)
T ss_pred -----------------------------------------------------------------ccchHHHHhcCC---
Confidence 012355666443
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|. +++.|+||+.++++
T Consensus 62 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 62 -PPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred -CceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 788899999999999999999999999994 58999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-09 Score=72.62 Aligned_cols=56 Identities=23% Similarity=0.458 Sum_probs=52.0
Q ss_pred hhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 205 V~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|+++|.. |++.+.+++++.+++.+|.+++.+++||+|.+ |+++|+||++++++.|.
T Consensus 1 v~~~m~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP----PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS----SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC----CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 6788887 59999999999999999999999999999875 79999999999999886
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=97.65 Aligned_cols=132 Identities=10% Similarity=0.149 Sum_probs=106.4
Q ss_pred HHHHHHhh--cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 35 ETLTAAFA--RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 35 e~Ln~~fa--~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
+-++..|+ ..+|..+-. |..+++.++.++|+.|+.+.+.+++...-||++.+ .|+++|||...|++.+.
T Consensus 180 ~~i~~vl~l~~~~v~diMt-pr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-------~d~ivGiv~~kDll~~~- 250 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMR-PRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET-------IDNITGVLYIKDLLPHL- 250 (408)
T ss_pred HHHHHHhccCCCEeeeeCC-chHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-------CCceEEEEEHHHHHhHh-
Confidence 34666654 777776654 45689999999999999999999999999999865 35899999999987520
Q ss_pred HHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHH
Q 022403 113 ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYK 192 (297)
Q Consensus 113 e~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~ 192 (297)
.
T Consensus 251 -----~-------------------------------------------------------------------------- 251 (408)
T TIGR03520 251 -----N-------------------------------------------------------------------------- 251 (408)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred HhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 193 ~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+ .+.+++++++ |.+.|..+.++.+++..|.+++.|..+|+|. .|.++||||..||++.+.+-
T Consensus 252 -----~--~~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 252 -----K--KNFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred -----c--CCCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhCC
Confidence 0 1123566664 3578889999999999999999999999997 46899999999999999654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-08 Score=93.67 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=99.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
+.++.|..++++.+|+++|.+++|.+.||+|... +.+|.++..|+..- + .
T Consensus 237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g--------~~v~~~s~~Dv~~l-------~-~-------------- 286 (381)
T KOG1764|consen 237 SNIASISEDTPVIEALKIMSERRISALPVVDENG--------KKVGNYSRFDVIHL-------A-R-------------- 286 (381)
T ss_pred hhheeecCCCcHHHHHHHHHhcCcCcceEEcCCC--------ceecceehhhhhhh-------h-h--------------
Confidence 3689999999999999999999999999999873 56999999999882 1 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc-cchhhHhhhcc
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS-TTVRSIIKSYR 213 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~-tkV~dI~~s~r 213 (297)
.+. |. ..... -+...-...-+
T Consensus 287 -------------~~~----------------------------------------~~-----~~~~~~l~~~~~~~~~~ 308 (381)
T KOG1764|consen 287 -------------EGT----------------------------------------YN-----NLDLSCLSEALSHRPIR 308 (381)
T ss_pred -------------cCc----------------------------------------cC-----ccchhHHHHHhhhcccc
Confidence 000 00 00011 11122234556
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+++.+.+.+++||..++.-|..+|+||+.|||. +|.++|+||-++|+++|..+..
T Consensus 309 ~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 309 FEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred cCccEEEeecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHhCcc
Confidence 677999999999999999999999999999998 4699999999999999988753
|
|
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.6e-07 Score=89.39 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=104.4
Q ss_pred CCCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTAT 128 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~ 128 (297)
..+.++++.+.|+.+|+..+.+. .+.-.-|+|.+ +|++|+|++.+++. +.
T Consensus 139 t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~--------~~L~Gvvsl~~Ll~--------a~--------- 193 (451)
T COG2239 139 TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK--------GKLLGVVSLRDLLT--------AE--------- 193 (451)
T ss_pred eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc--------cceEEEeeHHHHhc--------CC---------
Confidence 66889999999999999999853 45666777776 47999999999987 31
Q ss_pred ccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhH
Q 022403 129 AAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI 208 (297)
Q Consensus 129 a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI 208 (297)
-+.+|+++
T Consensus 194 ------------------------------------------------------------------------~~~~i~~i 201 (451)
T COG2239 194 ------------------------------------------------------------------------PDELLKDL 201 (451)
T ss_pred ------------------------------------------------------------------------cHhHHHHH
Confidence 24679999
Q ss_pred hhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhc
Q 022403 209 IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (297)
Q Consensus 209 ~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~ 277 (297)
|... ++.|.++++-.++..++.||++-.+||||.+ ++++|+||+.+||.-+.+-...|-...-|
T Consensus 202 m~~~----~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 202 MEDD----VVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred hccc----ceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 9888 9999999999999999999999999999985 69999999999999999888776555444
|
|
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-07 Score=62.11 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=46.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
.+++.++.++|+.+++++|.++++..+||+|.+ ++++|+|+..||+.+++
T Consensus 7 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 7 PPPITVSPDDSLEEALEIMRKNGISRLPVVDED--------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT--------SBEEEEEEHHHHHHHHH
T ss_pred CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--------CEEEEEEEHHHHHhhhh
Confidence 378999999999999999999999999999877 48999999999999865
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-06 Score=81.72 Aligned_cols=141 Identities=10% Similarity=0.136 Sum_probs=107.5
Q ss_pred CCHHHH--HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHH
Q 022403 31 HSLQET--LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSA 106 (297)
Q Consensus 31 ~~~~e~--Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~d 106 (297)
++.+|+ ++.. |+..+|..+-. |..+|+.|+.++|+.++.+.+.+++..--||++.+ .|..+|||...|
T Consensus 170 l~~~e~~mi~~vl~l~~~~v~eiMt-Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-------~D~IiGiv~~kD 241 (413)
T PRK11573 170 ISRRNQDMLLSVLDLEKVTVDDIMV-PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-------LDDAISMLRVRE 241 (413)
T ss_pred cCHHHHHHHHHHhccCCCChhhcCC-ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-------CCceEEEEEHHH
Confidence 454443 5555 45677776664 47799999999999999999999999999999865 358999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhh
Q 022403 107 IILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRL 186 (297)
Q Consensus 107 Iv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~ 186 (297)
++....+.
T Consensus 242 ll~~~~~~------------------------------------------------------------------------ 249 (413)
T PRK11573 242 AYRLMTEK------------------------------------------------------------------------ 249 (413)
T ss_pred HHHHhhcc------------------------------------------------------------------------
Confidence 88621000
Q ss_pred hhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 187 ~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
..+...++.++++ |.+.|..+.++.++|..|.++|.|=..|+|. -|...||||..||++.+.+
T Consensus 250 -----------~~~~~~~l~~~~r-----~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 250 -----------KEFTKENMLRAAD-----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred -----------CcCCHHHHHhhcc-----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC
Confidence 0001112333332 3466779999999999999999999999998 4689999999999999987
Q ss_pred cc
Q 022403 267 CK 268 (297)
Q Consensus 267 ~~ 268 (297)
-.
T Consensus 313 ei 314 (413)
T PRK11573 313 DF 314 (413)
T ss_pred CC
Confidence 65
|
|
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=77.48 Aligned_cols=95 Identities=24% Similarity=0.389 Sum_probs=77.5
Q ss_pred hhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 187 ~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
-.-+++.|+..+. ..-+.+.||.+- .+.|.+++++.+++.||.+|++..+||++. ++++|=||-++|++++.+
T Consensus 50 ~k~Il~aL~e~e~-~~ita~~iM~sp----vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le 122 (187)
T COG3620 50 VKRILEALEEAEK-TRITAKTIMHSP----VVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLE 122 (187)
T ss_pred HHHHHHHHHHhhc-ceEeHhhhccCC----eeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhc
Confidence 3456777777665 445677888776 999999999999999999999999999995 699999999999999977
Q ss_pred ccCCchhhhhcccccccc---CCCcccccc
Q 022403 267 CKGRDWFDIIASQPISDL---GLPFMSSDE 293 (297)
Q Consensus 267 ~~g~dwf~~i~~K~lsel---gLp~~~~~~ 293 (297)
-. +++..+..++. -||.+++|+
T Consensus 123 ~~-----e~i~~~~vr~vM~e~fP~Vs~~~ 147 (187)
T COG3620 123 GM-----ESIRSLRVREVMGEPFPTVSPDE 147 (187)
T ss_pred cc-----cchhhhhHHHHhcCCCCcCCCCC
Confidence 54 44555555543 689999886
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.1e-05 Score=75.01 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=110.2
Q ss_pred CCCHHHH--HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehH
Q 022403 30 PHSLQET--LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS 105 (297)
Q Consensus 30 ~~~~~e~--Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~ 105 (297)
-++.+|+ ++.. |+..+|-++-- |..+++.++.++++.++.+.+.+++-+--||++.+ .|.++|||...
T Consensus 188 ~~~~~E~~mi~~v~~l~~~~v~eiMt-PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~-------~D~iiGiv~~K 259 (429)
T COG1253 188 VLEEEEREMINNVLDLDDRTVREIMT-PRTDIVALDLTDTVEELIELILESGHSRIPVYDGD-------LDNIIGIVHVK 259 (429)
T ss_pred CcCHHHHHHHHHHhccCCcEeeeEee-ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC-------CCcEEEEEEHH
Confidence 3444444 4444 56788877765 37799999999999999999999999999999943 35899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhh
Q 022403 106 AIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADR 185 (297)
Q Consensus 106 dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~ 185 (297)
|+....+....
T Consensus 260 dll~~~~~~~~--------------------------------------------------------------------- 270 (429)
T COG1253 260 DLLRALLDGQS--------------------------------------------------------------------- 270 (429)
T ss_pred HHHHHHhcCcc---------------------------------------------------------------------
Confidence 99983111100
Q ss_pred hhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 186 LHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 186 ~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
....+..++ |.+-|....+++++|..|.+.|.|=-.|+|.- |.+.|+||..||++.+.
T Consensus 271 ------------~~~~~~~~~---------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIv 328 (429)
T COG1253 271 ------------DLDLRVLVR---------PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIV 328 (429)
T ss_pred ------------ccchhhccc---------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHh
Confidence 000111222 67778899999999999999999999999984 79999999999999998
Q ss_pred hccCCchhh
Q 022403 266 GCKGRDWFD 274 (297)
Q Consensus 266 ~~~g~dwf~ 274 (297)
+.. .|.+|
T Consensus 329 Gei-~de~d 336 (429)
T COG1253 329 GEI-PDEHD 336 (429)
T ss_pred CCC-cCccc
Confidence 855 33444
|
|
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=62.62 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=48.0
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.||+.+.+++++.+++.+|.+++++++||+|.+.+++.|+||+.++++.+..+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~ 54 (123)
T cd04627 1 EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENA 54 (123)
T ss_pred CCceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhH
Confidence 478999999999999999999999999999985368999999999999876543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.7e-05 Score=72.28 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=87.6
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
+....+.+..++++.+..+++.++.|+|.+. ++.|+|...++..| ..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~-------~~------------------ 299 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQN--------KLVGVVDVESIKQA-------RK------------------ 299 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCCC--------CEEEEEeHHHHHHH-------hh------------------
Confidence 4566788999999999999999999999873 89999998877653 10
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
....+.+.+... +
T Consensus 300 ---------------------------------------------------------------~~~~~~~~~~~~----~ 312 (363)
T TIGR01186 300 ---------------------------------------------------------------KAQGLQDVLIDD----I 312 (363)
T ss_pred ---------------------------------------------------------------cCCchhhhhccC----C
Confidence 011244455444 6
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+|.++++|.+++.+|.+++.. +||||.+ |+++|+||+.+|++.|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHhh
Confidence 7899999999999999999888 9999974 6999999999999999763
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=60.71 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=44.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
|+.++++.++.+++.+|.+++.+.+||+|.++++++|+||..++++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 789999999999999999999999999997657999999999998865
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.8e-05 Score=62.48 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=49.4
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++|+++|... +..+.+++++.+++.+|.+++++.+||+|.+ +++.|+||.+++.+
T Consensus 58 ~~v~dim~~~----~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRK----PVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCC----CCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 7899999765 7889999999999999999999999999974 69999999998753
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=71.33 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=86.3
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
+....+.+..+|++.|.+++..++.|+|.+ ++++|+|...++..+ ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~-------~~------------------ 334 (400)
T PRK10070 288 IRKTPGFGPRSALKLLQDEDREYGYVIERG--------NKFVGAVSIDSLKTA-------LT------------------ 334 (400)
T ss_pred cccCCCCCHHHHHHHHHhcCCceEEEEcCC--------CcEEEEEeHHHHHhh-------hh------------------
Confidence 345677899999999999999999999987 389999999888763 00
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
....+++++... +
T Consensus 335 ---------------------------------------------------------------~~~~~~~~~~~~----~ 347 (400)
T PRK10070 335 ---------------------------------------------------------------QQQGLDAALIDA----P 347 (400)
T ss_pred ---------------------------------------------------------------cCCchhhhhccC----C
Confidence 011245555444 6
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+|.+++++.+++.++.+.... +||||. +|+++|+||+.++++.|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 7899999999999999886655 999997 4799999999999999865
|
|
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.7e-05 Score=57.75 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=48.2
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf 273 (297)
++.+..++++.+++.+|.+++++++||+|. ++++.|++|+.+++..+.+....+|+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~ 58 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLE 58 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHH
Confidence 578899999999999999999999999996 46999999999999988765544443
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=74.47 Aligned_cols=66 Identities=17% Similarity=0.336 Sum_probs=61.2
Q ss_pred cCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 197 ~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
-.-.-+.||.++|.+. .++|.+|.|+-++..+|.+++++-.||+|.+ +++||||-++|.+.+++|.
T Consensus 166 m~siPk~~V~~~~s~~----~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~ 231 (294)
T COG2524 166 MVSIPKEKVKNLMSKK----LITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGN 231 (294)
T ss_pred eeecCcchhhhhccCC----ceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCC
Confidence 3456789999999988 9999999999999999999999999999965 8999999999999999994
|
|
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.2e-05 Score=58.74 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=45.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
|+..++++.++.+++.+|.+++.+++||+|. +|++.|++|..+++..+.+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~ 51 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKE 51 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhc
Confidence 5789999999999999999999999999997 5799999999999987643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=46.32 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
|+..+.+++++.+++..|.+++.+.+||++.+ +++.|++|..++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 46778899999999999999999999999974 6899999999998765
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=70.21 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=99.7
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+--.+..++++.|=-++-.+.|..--||+|... +.+|+|++.|+.- .
T Consensus 197 ~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~--------kvvGvVt~rDv~~--------~--------------- 245 (432)
T COG4109 197 LEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM--------KVVGVVTMRDVLD--------K--------------- 245 (432)
T ss_pred cccceeccccccHHHHHHHHHHcCCCccceecccc--------eEEEEEEehhhhc--------C---------------
Confidence 35667789999999999999999999999999874 7999999998876 2
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
-.+|++..+|++.
T Consensus 246 ------------------------------------------------------------------~~~t~ieKVMtkn- 258 (432)
T COG4109 246 ------------------------------------------------------------------KPSTTIEKVMTKN- 258 (432)
T ss_pred ------------------------------------------------------------------CCCccHHHHhccC-
Confidence 1367888899988
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
-++|....|+-.+-..|-=.++.-+||||.. .++.|+||+++|++-|...-.
T Consensus 259 ---p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 259 ---PITVRAKTSVASVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred ---CeeecccchHHHHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHHHhcc
Confidence 7899999999999999999999999999995 599999999999999876543
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.5e-05 Score=57.74 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=47.8
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.|+..+.. .++..+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+.|
T Consensus 56 ~~v~~~~~---~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~--------~~~~Giit~~di~~~ 111 (111)
T cd04603 56 LKVCEVYI---VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE--------GKLVGTIYERELLRF 111 (111)
T ss_pred cChhheee---cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CeEEEEEEhHHhhcC
Confidence 45665543 456889999999999999999999999999975 389999999999876
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.1e-05 Score=74.42 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=51.4
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.-+-.|||... +++|..++|+-++..+|-+|++|-+||+|.+ .+++||+||++..+-
T Consensus 244 ~LtcadIMSrd----Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~ 300 (382)
T COG3448 244 ELTCADIMSRD----VVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKH 300 (382)
T ss_pred cccHHHhcCcc----ceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhc
Confidence 44567899999 9999999999999999999999999999985 599999999997763
|
|
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=56.37 Aligned_cols=51 Identities=18% Similarity=0.424 Sum_probs=46.1
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+..+.+++++.+++.+|.+++.+.+||+|.+++++.|+||+.++.+++.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~ 53 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGG 53 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhcc
Confidence 678899999999999999999999999998547999999999999988753
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=73.00 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=54.7
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.+|+++|... +..+.+++++.+++.+|.+++++++||+|.+ |+++|+||..++.+.+.+-.
T Consensus 68 ~~V~dim~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~ 128 (546)
T PRK14869 68 PQVRDLEIDK----PVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDIL 128 (546)
T ss_pred CcHHHhcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhc
Confidence 6899999865 8999999999999999999999999999974 69999999999998766533
|
|
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=67.05 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=55.6
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
..+|+++|+..+ ||..|.++.++.+++.+|.+++.+.+||+|. +|++.|+||..++.+.+..
T Consensus 196 ~~~V~~im~~~~--~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~ 257 (321)
T PRK11543 196 LNKVHHLMRRDD--AIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVG 257 (321)
T ss_pred HhHHHHHhccCC--CCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhC
Confidence 789999998874 7899999999999999999999999999997 4699999999999886643
|
|
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00023 Score=55.07 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+|++.+.+++++.+++..|.+++++.+||+|. ++++.|+||+.++++.+.
T Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 1 SPPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHH
Confidence 47899999999999999999999999999997 368999999999998775
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=54.53 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=46.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+++.+.+++++.+++.+|.+++.+++||+|.+ |++.|+||+.++++.+....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~ 55 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGR 55 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhccccc
Confidence 46889999999999999999999999999974 799999999999988765443
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.4e-05 Score=72.87 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=47.2
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
.+++.+..++++.||.+.|.++++...||+|.+ ++++|+|+..||+..+.++.
T Consensus 203 ~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~--------g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 203 SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE--------GRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC--------CeEEEEEEHHHHHHHHHhhh
Confidence 357889999999999999999999999999976 38999999999999766554
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00035 Score=52.64 Aligned_cols=52 Identities=12% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+++.+.+++++.+++..|.+++..++||+|. +|++.|+||+.++++.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~ 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARD 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhC
Confidence 35788999999999999999999999999997 47999999999999877543
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=54.40 Aligned_cols=48 Identities=8% Similarity=0.231 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
++..|++++++.+++.+|.+++++.+||+|. ++++.|++|.+++.+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC
Confidence 4788999999999999999999999999997 46999999999998744
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00029 Score=54.19 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=45.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++.++.++.++.+++.+|.+++++++||+|. |++.|++|+.++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~ 51 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPF 51 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHH
Confidence 5788999999999999999999999999995 6999999999999877653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=54.51 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=45.4
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+|+..+.+++++.+++.+|.+++.+++||+|. |++.|++|+.++++.+..
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~ 50 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRS 50 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhh
Confidence 36889999999999999999999999999995 699999999999987764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=43.90 Aligned_cols=46 Identities=35% Similarity=0.476 Sum_probs=41.0
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.+.++.++++.++.+.+.++++..+||++.+ ++++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE--------GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC--------CeEEEEEEHHHHHHh
Confidence 4678999999999999999999999999975 279999999998764
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00036 Score=53.39 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=45.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+..+.++.++.+++.+|.+++.+.+||+|.+.+++.|++|.+++++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~ 52 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA 52 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence 368899999999999999999999999999743699999999999987654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=52.58 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=45.9
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.|++.++.++++.+++.+|.+++.+++||+|. +++.|++|+.++.+.+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~ 51 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEG 51 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcc
Confidence 36788999999999999999999999999996 6899999999999987643
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00026 Score=65.78 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
...+|+++|.+. .++..|.+++|+.+++.+|.+++.+.+||+|. +|+++|+||..++.+.+..
T Consensus 200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~ 262 (326)
T PRK10892 200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDM 262 (326)
T ss_pred ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhc
Confidence 567899999861 24899999999999999999999888888886 5799999999999886553
|
|
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00043 Score=52.22 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=45.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.|++|.+++++.+++.+|.+.+.+++||+|. +|++.|+||+.++.+.+.+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEG 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhc
Confidence 4789999999999999999899999999997 46999999999999887654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00028 Score=57.06 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=45.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+.++..++++.+++.+|.+++.+.+||+|. ++++.|+||+.+++..+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~ 51 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFE 51 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhc
Confidence 3677899999999999999999999999997 4799999999999998863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00054 Score=49.94 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=47.8
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
++..+..+.++.+++.+|.+++.+++||+|.+ +++.|+++++++++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~ 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC
Confidence 46788999999999999999999999999974 6999999999999988765543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=52.30 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=45.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++..+..++++.+++.+|.+++.+++||+|.+ +++.|+||+.++++.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~ 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAG 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhcc
Confidence 47789999999999999999999999999974 7999999999999887653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00044 Score=56.86 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=45.0
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
|+.+.+++++.+++.+|.+++++.+||+|.+ +++.|+||..++++.+..
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFT 51 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhh
Confidence 6889999999999999999999999999974 699999999999998864
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00045 Score=61.86 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=52.6
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
-.+|+++|... ++..+++++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++.+.
T Consensus 154 ~~~v~~im~~~---~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTT---DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCC---CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHh
Confidence 37899999654 37789999999999999999999999999974 69999999999998765
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00047 Score=69.50 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
..+.+|+|+|++. +..+++++++.+++..|.+++.+.+||+|. ++++.|+||..++.+.+.
T Consensus 444 L~~~~V~dim~~~----~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~ 504 (574)
T PRK01862 444 LRTTQMRELIQPA----QTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLL 504 (574)
T ss_pred HhhCcHHHHhcCC----CceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence 5678999999876 788999999999999999999999999997 469999999999998654
|
|
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0005 Score=52.73 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=46.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
+++.+.+++++.+++.+|.+++.+++||+|.+ |++.|++|.+++++.+..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~ 53 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSL 53 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhcccc
Confidence 57889999999999999999999999999974 79999999999999876544
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00061 Score=51.96 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHhhcC-CceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~r-l~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+|.+++++.++.+++.+|.+++ .+.+||+|. ++++.|+||..+++..+.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence 4788999999999999998775 899999996 469999999999998764
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00068 Score=51.08 Aligned_cols=49 Identities=10% Similarity=0.358 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++++.+++++.+++.+|.+++.+++||+|. +++.|+||+.++++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~ 50 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIAR 50 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhc
Confidence 4678999999999999999999999999996 689999999999987654
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00034 Score=67.72 Aligned_cols=62 Identities=15% Similarity=0.297 Sum_probs=55.7
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+...+|+++|... ++.+.+++++.+++.+|.++++.++||+|. ++++.|+||..++.+.+.+
T Consensus 332 l~~~~v~~im~~~----~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 332 LKNATVKDLHLPA----PVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFA 393 (454)
T ss_pred hccCCHHHhCcCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhc
Confidence 6778999999765 899999999999999999999999999997 4689999999999987654
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00074 Score=50.95 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=45.3
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.++.+.++.+++.+|.+++...+||+|.+++++.|++|+.++++.+.+
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 67899999999999999999999999999754799999999999998764
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=53.67 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=44.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++.+.++.++.+++.+|.+++++++||+|.+ +++.|+||..++++.+.+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHH
Confidence 57889999999999999999999999999974 689999999999986654
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00047 Score=53.98 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=44.7
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.++++.++.+++..|.+++.+.+||+|.+ |++.|+||+.++++.+.+
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~ 51 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLS 51 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcC
Confidence 6789999999999999999999999999974 799999999999987754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00093 Score=50.07 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=45.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+..++++.++.+++.+|.+++.+++||+|.+ +++.|++|..++++.+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~ 52 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALR 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhc
Confidence 46788999999999999999999999999974 6999999999999877643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00082 Score=52.44 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=44.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+..+.+++++.+++.+|.+++.+.+||+|.+ +++.|+||+.++...+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~ 51 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVR 51 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhh
Confidence 46788999999999999999999999999975 699999999999987643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00061 Score=53.95 Aligned_cols=50 Identities=10% Similarity=0.272 Sum_probs=44.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++.+.++.++.+++.+|.+++.+++||+|. ++++.|+||+.++++.+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~ 52 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAEL 52 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcc
Confidence 5788999999999999999999999999997 4699999999999986654
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00062 Score=51.44 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=44.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+++++++.+++.+|.+++.+++||+|.+ +++.|+||+.++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhh
Confidence 46789999999999999999999999999974 699999999999986654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00075 Score=51.06 Aligned_cols=53 Identities=26% Similarity=0.480 Sum_probs=47.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
..+.+.++.++.+++.+|++|++.++||++.+ +++|+||..++++.+......
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~ 60 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKR 60 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCCc
Confidence 37899999999999999999999999999953 799999999999999866543
|
|
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00092 Score=51.45 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=43.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
...+.+++++.+++.+|.+++.+.+||+|. +|++.|+||..++++.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~ 51 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGR 51 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhh
Confidence 356789999999999999999999999997 4699999999999987754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00098 Score=50.87 Aligned_cols=50 Identities=10% Similarity=0.317 Sum_probs=44.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+..++++.+++..|.+++.+++||+|.+ +++.|++|+.++++.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~ 51 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPS 51 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhh
Confidence 46788999999999999999999999999974 799999999999887653
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=49.76 Aligned_cols=50 Identities=10% Similarity=0.221 Sum_probs=44.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+++++++.+++.+|.+++.+++||+|.+ +++.|+||..++.+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFD 51 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhc
Confidence 35778999999999999999999999999974 699999999999987654
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=49.54 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=44.5
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|++|..++.+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~ 50 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLAS 50 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhc
Confidence 5788999999999999999999999999996 689999999999988754
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00096 Score=52.62 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=46.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
+++.+.+++++.+++.+|.+++.+++||+|.+ +++.|+||+.+++..+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~ 53 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGK 53 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccC
Confidence 46789999999999999999999999999974 69999999999998886543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=49.56 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++..+.++.++-+++..|.+++.+.+||+|. +|++.|++|..++++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~ 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc
Confidence 4678899999999999999999999999986 469999999999997543
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00089 Score=50.73 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=46.2
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
-|++.+- ..+.+.+.+++++.++.++|.++++...||+|.+ ++|+|+|+..+|+.
T Consensus 53 ~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------~~~~G~it~~di~~ 107 (108)
T cd04596 53 TTIEKVM---TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN--------KKLLGIISRQDVLK 107 (108)
T ss_pred ccHHHHh---cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC--------CCEEEEEEHHHhhc
Confidence 3555443 2467899999999999999999999999999965 38999999999875
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00077 Score=66.02 Aligned_cols=74 Identities=9% Similarity=0.225 Sum_probs=62.4
Q ss_pred HHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 191 YKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 191 ~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+++++-=.|.+++|+|||+.. ...+.++.++++-+++.++.+++..|+||.+.+..+++|||+..|++..+.+
T Consensus 179 ~~~i~~vl~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~ 252 (408)
T TIGR03520 179 QKILQGIVSFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK 252 (408)
T ss_pred HHHHHHHhccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc
Confidence 4455555568899999999752 3389999999999999999999999999999766799999999999976643
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=49.41 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=43.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
-+.+.+++++.+++.+|.+++.+++||+|. ++++.|++|+.++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~ 51 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALE 51 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhh
Confidence 467789999999999999999999999997 4699999999999986544
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=48.54 Aligned_cols=49 Identities=6% Similarity=0.247 Sum_probs=43.5
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+..+.+++++.+++..|.+++.+.+||+|.+ +++.|+||+.++++.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~ 51 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK 51 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh
Confidence 36778999999999999999999999999974 69999999999987653
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=49.30 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=43.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++..+..+.++.+++.+|.+++.+++||+|. +++.|+||..+++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~ 49 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVV 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHh
Confidence 3677899999999999999999999999996 69999999999997654
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=49.18 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++.+++++++.+++.+|.+++.+++||+|. +++.|++|..++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhc
Confidence 4788999999999999999999999999997 689999999999887654
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=49.12 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=44.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+|..+.+++++.+++..|.+++.+++||+|. .|++.|++|+.+++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~ 51 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLF 51 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhh
Confidence 4788999999999999999999999999997 4699999999999886654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=49.23 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=44.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+|+..++.+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~ 50 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPS 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhc
Confidence 4678999999999999999999999999996 699999999999987753
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=48.38 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+.++.++.+++.+|.+++.+++||+|. +++.|+||..+++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~ 50 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVA 50 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHh
Confidence 5788999999999999999999999999995 699999999999865443
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=48.62 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=43.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|+..+..++++.+++..|.+++.+++||+|. +++.|++|.+++.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~ 50 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALR 50 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHh
Confidence 6788999999999999998889999999997 68999999999988763
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=52.89 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=45.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++.++.++++.+++.+|.+.+...+||+|. ++++|++|..++.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~ 51 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTH 51 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhc
Confidence 3678999999999999999999999999996 6999999999999888643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=49.96 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred CceEecCCCCHHHHHHHHhhcC-CceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~r-l~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|+..+.+++++-+++..|..++ .+.+||+|. |++.|+||..++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~ 52 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTP 52 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhch
Confidence 4667889999999999998776 899999997 6999999999999876643
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=48.36 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=42.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.++++.|.+++....||+|.+ ++|+|+|+..+|+.
T Consensus 60 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------g~~~Gvi~~~di~~ 106 (107)
T cd04610 60 KDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN--------NNLVGIITNTDVIR 106 (107)
T ss_pred CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC--------CeEEEEEEHHHhhc
Confidence 457889999999999999999999999999976 38999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=48.45 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=45.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|+..+.++.++.+++..|.+++.+++||+|. ++++.|++|..++.+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~ 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEAD 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcc
Confidence 4667889999999999999999999999997 46999999999999877643
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0022 Score=48.27 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=44.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+..+++++++.+++..|.+++.+++||+|.+ +++.|+||+.++.+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~ 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKG 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhcc
Confidence 46678899999999999998899999999974 6999999999999988654
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0034 Score=47.79 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=44.0
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+.+.+++++.+++..|.+++.+.+||+|. ++++.|++|+.++++.+.+.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~ 53 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKG 53 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcC
Confidence 456889999999999999999999999997 46999999999999877654
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0024 Score=48.99 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=42.7
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
++.+.+++++.+++..|.+++.+.+||+|. +|++.|++|..++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~ 49 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAG 49 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhc
Confidence 678999999999999999999999999996 47999999999998753
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0034 Score=59.08 Aligned_cols=73 Identities=10% Similarity=0.183 Sum_probs=61.7
Q ss_pred HHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 191 YKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 191 ~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.++|.+-=.|...+|++||+.. ..++.+..+.++-+++.++.+++..|+||++.+.++++|||+-.+++..+.
T Consensus 55 ~~~i~~vl~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 55 RDMLEGVMDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred HHHHHHHhccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 4555555568999999999852 238999999999999999999999999999975568999999999997664
|
|
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0033 Score=49.30 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=42.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|++.+..++++.+++.+|.+++.+.+||+|.+ |++.|+||..++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhh
Confidence 57889999999999999999999999999964 68999999999886
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0023 Score=50.52 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.++..++.++++.+|.++|.++++...||+|.+ ++++|+|+..+|..
T Consensus 66 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--------~~l~Givt~~dl~~ 112 (113)
T cd04597 66 RKPVTARPNDPLREALNLMHEHNIRTLPVVDDD--------GTPAGIITLLDLAE 112 (113)
T ss_pred CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHhhc
Confidence 467889999999999999999999999999976 38999999998853
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0036 Score=63.55 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=61.7
Q ss_pred hhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCcee
Q 022403 162 GAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNV 241 (297)
Q Consensus 162 ~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rv 241 (297)
|.+.|=-++--++++- .--.+..++|.+.+ .+|+++|..+--.| ..|.+++|+.+++.+|.+++.+.+
T Consensus 64 gdalAiala~~gG~g~---Ih~n~sie~qa~lV--------~kVk~~~~g~i~~~-~tV~pd~tl~eAl~~m~~~~~~~v 131 (502)
T PRK07107 64 DDNMAIALAREGGLSF---IFGSQSIESEAAMV--------RRVKNYKAGFVVSD-SNLTPDNTLADVLDLKEKTGHSTV 131 (502)
T ss_pred hHHHHHHHHHcCCCeE---eeCCCCHHHHHHHH--------HHHHHHhcCCcCCC-CEeCCCCcHHHHHHHHHhcCCCeE
Confidence 4444444455555551 00013345555333 56778776554555 488999999999999999999999
Q ss_pred EEEcCC--CCCeeEEeehHHHH
Q 022403 242 PIIEPG--TPDIKNYITQSAVV 261 (297)
Q Consensus 242 PVVd~~--~~~i~niITQSaVI 261 (297)
||+|.+ ++++.||||..++.
T Consensus 132 pVVD~~~~~gkLvGIVT~~DLr 153 (502)
T PRK07107 132 AVTEDGTAHGKLLGIVTSRDYR 153 (502)
T ss_pred EEEeCCCcCCEEEEEEEcHHhh
Confidence 999963 57999999999985
|
|
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0044 Score=46.80 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=42.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+..+.+++++.+++.+|.+++.+.+||+|.+ ++.|++|..+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~G~v~~~dl~~~~~ 49 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVV 49 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHh
Confidence 5678899999999999999999999999963 8999999999998764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0028 Score=48.24 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCcEEecCC--CCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMAD--TTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d--~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+++.+.++ +++.+|.+.|.++++...||+|.+ ++++|+|+..+|+.
T Consensus 66 ~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~--------~~~~Gvit~~dl~~ 114 (115)
T cd04620 66 QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ--------GQLIGLVTAESIRQ 114 (115)
T ss_pred CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC--------CCEEEEEEhHHhhc
Confidence 356778777 789999999999999999999875 38999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0029 Score=47.81 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=45.5
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.|+..+-. .++..+..++++.+|+++|.++++...||+|.. +|+|+|+..+|+.
T Consensus 58 ~~v~~~~~---~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~---------~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMN---PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGG---------TLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhC---CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECC---------EEEEEEEHHHhhc
Confidence 45665543 357789999999999999999999999999843 8999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0037 Score=47.43 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=42.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.+++++|.++++...||+|.+ ++|+|+|+..+|..
T Consensus 61 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------~~~~Gvit~~dll~ 107 (109)
T cd04606 61 TDVISVSADDDQEEVARLFEKYDLLALPVVDEE--------GRLVGIITVDDVID 107 (109)
T ss_pred CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC--------CcEEEEEEhHHhhh
Confidence 357899999999999999999999999999865 38999999999875
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0053 Score=46.43 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=42.6
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.+.++.++.+++.+|.+++.+.+||+|. +++.|++|..++++.+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~ 50 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLL 50 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHc
Confidence 467789999999999999999999999996 589999999999987653
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0031 Score=46.92 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=41.8
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.++++.|.+++....||+|.. +|+|+|+..+|++
T Consensus 59 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------~~~G~it~~~l~~ 104 (105)
T cd04599 59 REVVTISPEASLLEAKRLMEEKKIERLPVLRER---------KLVGIITKGTIAL 104 (105)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECC---------EEEEEEEHHHhcc
Confidence 467899999999999999999999999999863 8999999999874
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0037 Score=62.53 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=44.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV 111 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wv 111 (297)
.+++.+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+..+
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~--------g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN--------GRLKGLITVKDIEKAE 204 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEEhHHhhhhh
Confidence 578999999999999999999999999999976 3899999999999853
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0062 Score=60.89 Aligned_cols=138 Identities=17% Similarity=0.303 Sum_probs=103.4
Q ss_pred HHHHHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHH
Q 022403 34 QETLTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV 111 (297)
Q Consensus 34 ~e~Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wv 111 (297)
++.|-.. ++.+-|+.+ -+|...+..|+.|++..+-++.|.+.-----||+..+ .|..+||+-..++.+|+
T Consensus 188 rdmL~gvLDLe~~tV~DI-MvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-------~DnIiGvlh~r~llr~l 259 (423)
T COG4536 188 RDMLLGVLDLENLTVSDI-MVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-------LDNIIGVLHVRDLLRLL 259 (423)
T ss_pred HHHHhcccccccceeeee-eccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-------hhHhhhhhhHHHHHHHh
Confidence 3444443 345667766 4567899999999999999999988766667999876 35899999888888864
Q ss_pred HHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHH
Q 022403 112 LETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFY 191 (297)
Q Consensus 112 Le~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~ 191 (297)
.|..+
T Consensus 260 ~e~~~--------------------------------------------------------------------------- 264 (423)
T COG4536 260 NEKNE--------------------------------------------------------------------------- 264 (423)
T ss_pred hccCc---------------------------------------------------------------------------
Confidence 43322
Q ss_pred HHhhhcCCCCccchhhH-hhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 192 KVILQEEPFKSTTVRSI-IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 192 ~~L~~~e~~k~tkV~dI-~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
|....+..+ .+.| |+| ..+++.+-|.-|.++|-|-=-|||. -|++.|+||-.||++-+.+-+-
T Consensus 265 --------~~k~d~~~~a~epy----FVP--e~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 265 --------FTKEDILRAADEPY----FVP--EGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred --------ccHhHHHHHhcCCe----ecC--CCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhcccc
Confidence 222222222 3445 655 8889999999999999888889998 5799999999999998876654
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0019 Score=65.21 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
+..+..|++++|... ++++.++.++-+++.+|.+++.+.+||+|. ++++.||||..++.
T Consensus 84 ~~l~~VKv~~iMi~~----pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~ 142 (479)
T PRK07807 84 EVVAWVKSRDLVFDT----PVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCA 142 (479)
T ss_pred HHHhhcccccccccC----CeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHh
Confidence 445688899998766 899999999999999999999999999996 56999999999973
|
|
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0043 Score=46.97 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.+|++.|.+++....||+|.+ +++|+|+..||+.
T Consensus 58 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~---------~~iGvit~~dl~~ 103 (104)
T cd04594 58 RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDG---------KFKGIVTLDSILD 103 (104)
T ss_pred cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECC---------EEEEEEEHHHhhc
Confidence 456889999999999999999999999999743 8999999999864
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.008 Score=46.06 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=40.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaVI~ 262 (297)
+...+..++++.+++.+|.+++.+.+||+|.+ ++++.|+||..++..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 45678899999999999999999999999963 479999999999864
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0097 Score=44.84 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=41.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH-HHHh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLE 265 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI-~~L~ 265 (297)
+..+.+++++-+++.+|.+++.+.+||+|. |++.|+||..+++ +.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~ 50 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVA 50 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhh
Confidence 577899999999999999999999999996 7999999999987 3443
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0091 Score=60.46 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=89.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+-+.+.++.|+.|+++.-..++..+.||-+..- -..|++|+|+-.||=..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~-----~~~KLvG~vtsrdi~f~------------------------ 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK-----RGSKLVGIITSRDIQFL------------------------ 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCc-----ccceeEEEEehhhhhhh------------------------
Confidence 3446788899999999999999999999986432 12489999987776441
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.-.++-+.++|...
T Consensus 167 ----------------------------------------------------------------~~~~~~~~~vmt~~-- 180 (503)
T KOG2550|consen 167 ----------------------------------------------------------------EDNSLLVSDVMTKN-- 180 (503)
T ss_pred ----------------------------------------------------------------hcccchhhhhcccc--
Confidence 01356688888887
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
-+....+.+|-++=.+|.|.+-+++||||. +|.++++|+++|+.+-
T Consensus 181 --~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 181 --PVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred --cccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 377788999999999999999999999998 5799999999998764
|
|
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0075 Score=45.08 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=41.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
.+..+..++++-+++.+|.+++.+++||+|.+ |++.|++|.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~ 48 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRF 48 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeee
Confidence 46788999999999999999999999999974 79999999998863
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0068 Score=46.73 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=41.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.++.++++.++.++|.++++...||.+.+ +|+|+|+..+|..
T Consensus 59 ~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~---------~~~Gvvt~~dl~~ 104 (105)
T cd04591 59 PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEG---------RLVGIITRKDLLK 104 (105)
T ss_pred CCCceECCCCcHHHHHHHHHHcCCCEEEEEECC---------eEEEEEEhhhhhc
Confidence 356789999999999999999999999999643 8999999999865
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.018 Score=60.88 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=97.6
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
+++|+.++.-..+..-+++|...+=.+=||+|....+.. .+..|+|-.+.++.- |+...--.. +..
T Consensus 589 ~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~---~~l~GlILRshl~vl-L~~~~f~~~--~~~-------- 654 (762)
T KOG0474|consen 589 SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEA---GRLHGLILRSHLLVL-LKKRVFVEE--SRS-------- 654 (762)
T ss_pred cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccc---hhhhHHHHHHHHHHH-HHhhhhhcc--Ccc--------
Confidence 568999999999999999999999999999996432211 578999988888874 333322211 000
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchh-------
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVR------- 206 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~------- 206 (297)
+ .+-|......-+||++ ++..+++..+.
T Consensus 655 ----------------~--------------------------~~~~~~~~~~~~d~a~---r~~~i~dv~lt~~e~~~y 689 (762)
T KOG0474|consen 655 ----------------T--------------------------FDLPVRRKFTFRDFAK---REPSIEDVHLTSEEMEMY 689 (762)
T ss_pred ----------------c--------------------------cCcchhhcCCHHHhhh---cCCchhhhhcchHhHhhc
Confidence 0 0112222333445553 22222222221
Q ss_pred ----hHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 207 ----SIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 207 ----dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.+|... -.+|..++|+-.+..|+..-++|.+-||+..+ .++|||||.|..++
T Consensus 690 vDl~p~~n~s----PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 690 VDLHPFMNPS----PYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-RVVGILTRKDLARY 745 (762)
T ss_pred cccccccCCC----CcccCcccchHHHHHHHHHhcceeEEEecCCC-ceeEEEehhhhhhH
Confidence 122222 46788899999999999999999999999865 77999999999854
|
|
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.018 Score=43.28 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=40.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
...++++.++-+++.+|.+.+..++||+|.+ +++.|++|+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~ 47 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLR 47 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHh
Confidence 5678899999999999999899999999975 79999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0081 Score=59.69 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=42.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCC--CCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~--~~i~niITQSaVI~ 262 (297)
+++.+++++|+.+++.+|.+++.+++||+|.+. ++++|+||..+++.
T Consensus 89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 89 DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence 378999999999999999999999999999753 69999999999974
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0069 Score=61.15 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=50.7
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
+..+..|++++|... ++.+.+++++.+++.+|.+++.+.+||+|. +++.||||+.++.
T Consensus 83 e~v~~VKv~eim~~~----pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~ 140 (475)
T TIGR01303 83 QTVAFVKSRDLVLDT----PITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLL 140 (475)
T ss_pred HHHhhcchhhccccC----CeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhh
Confidence 445688899988665 789999999999999999999999999994 5899999999973
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0071 Score=61.18 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=41.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVV 261 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaVI 261 (297)
++.+.+++|+.+++.+|.+++..++||+|.+ +++++||||..++.
T Consensus 106 pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 106 PYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 5789999999999999999999999999975 37999999999986
|
|
| >KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.1 Score=55.13 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=118.7
Q ss_pred cchhhHHHHHHhhccCCCCHHHHHHHHhhcCccccCCCCCCCCcEEecCC-CCHHHHHHHHHHCCCcccceecCCCCCCC
Q 022403 14 SSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMAD-TTIPDAVKILSECNILSAPVKIPDAPSSS 92 (297)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d-~sI~dAvkiLse~nIlsAPV~D~da~~~~ 92 (297)
.+-+-|=..|+-+..++|..++.+. -=..+|+- .|.....+++.+..+ +|+.|--.+|.+-.-.+=||+-.++.
T Consensus 517 gk~gIyda~I~~ng~P~l~~k~e~~-~t~~~~v~-~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~s--- 591 (696)
T KOG0475|consen 517 GKTGIYDAHIELNGYPFLDSKSEFS-STLAIPVM-EPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDS--- 591 (696)
T ss_pred ccchHHHHHHHhcCCCCcccccccc-cchhhhhh-chhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcccc---
Confidence 3444455667777788887776665 33345553 555444578999888 99999999999988889999965543
Q ss_pred ccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhc
Q 022403 93 DWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAE 172 (297)
Q Consensus 93 ~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d 172 (297)
.+.+|+|+=.+++.-++.-....+- ..++. +..+.|-
T Consensus 592 ---q~lvGfv~rr~l~~~i~~ar~~q~~--~~~~~-----------------~~f~~~~--------------------- 628 (696)
T KOG0475|consen 592 ---QRLVGFVLRRNLFLAILNARKIQSF--IVTTS-----------------IYFNDPS--------------------- 628 (696)
T ss_pred ---ceeEEEEchHHHHHHHhhhcccccc--ceecc-----------------cccCCCC---------------------
Confidence 4899999999999865422211110 00000 1111110
Q ss_pred ccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCee
Q 022403 173 KGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK 252 (297)
Q Consensus 173 ~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~ 252 (297)
|.. .. ..-.--+-++|+.-. .++|....++-+++.++.|-+++.+-|.. +|++.
T Consensus 629 -------~~~-~~------------~~~~~~~lk~il~~t----p~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~ 682 (696)
T KOG0475|consen 629 -------PSA-VA------------GIPSRLDLKDILDMT----PFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILL 682 (696)
T ss_pred -------ccc-cC------------CCCCCcCceeeccCC----cccccccCcHHHHHHHHHhhCceEEEEcc--CCeeE
Confidence 000 00 011123456777655 57999999999999999999999998887 56999
Q ss_pred EEeehHHHHHHH
Q 022403 253 NYITQSAVVQGL 264 (297)
Q Consensus 253 niITQSaVI~~L 264 (297)
|+||.-++++..
T Consensus 683 Giitkkd~l~~~ 694 (696)
T KOG0475|consen 683 GIITKKDCLRHT 694 (696)
T ss_pred eeeehHHHHHhh
Confidence 999999998764
|
|
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.03 Score=56.60 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=49.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a 118 (297)
..++.+.+++...|+.+++.++++.++||+|.+ +|.+|+|++.|||.-+-++.+..
T Consensus 204 ~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~--------~~LiG~itiDDiidvi~eEa~eD 259 (451)
T COG2239 204 DDVVSVLADDDQEEVARLFEKYDLLAVPVVDED--------NRLIGIITIDDIIDVIEEEATED 259 (451)
T ss_pred ccceeecccCCHHHHHHHHHHhCCeecceECCC--------CceeeeeeHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999998 48999999999999766666444
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.026 Score=57.39 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=44.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
+++.++.++++.||.++|.++++...||+|.+ ++++|+|+..||+.++.
T Consensus 174 ~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~--------g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 174 DLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED--------GELVDLVTRTDVKRVKG 222 (505)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHhh
Confidence 38899999999999999999999999999876 38999999999999643
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.098 Score=51.59 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=69.5
Q ss_pred hhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 188 EDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 188 ~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+-.+++++-=.+.++.|++||.. |.-.+.++.+++.-+++..+.+.+-.|+||.+.+...++|||.--+++..+...
T Consensus 191 ~~E~~mi~~v~~l~~~~v~eiMtP--R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 191 EEEREMINNVLDLDDRTVREIMTP--RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred HHHHHHHHHHhccCCcEeeeEeee--cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 344666766677999999999987 577888889999999999999999999999996677999999999999988877
Q ss_pred cC
Q 022403 268 KG 269 (297)
Q Consensus 268 ~g 269 (297)
..
T Consensus 269 ~~ 270 (429)
T COG1253 269 QS 270 (429)
T ss_pred cc
Confidence 54
|
|
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.13 Score=50.91 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=61.6
Q ss_pred HHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 191 YKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 191 ~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.++|++-=.|.+++|++||... .-.+.++.++++-+++.++.+++-.|+||.+.+...|+|||.--+++..+.
T Consensus 175 ~~mi~~vl~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 175 QDMLLSVLDLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred HHHHHHHhccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 3445444568999999999654 458899999999999999999999999999987679999999999997654
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.48 Score=45.62 Aligned_cols=118 Identities=16% Similarity=0.301 Sum_probs=90.3
Q ss_pred CCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccc
Q 022403 53 PGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (297)
Q Consensus 53 ~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~ 132 (297)
|.+|++.|+.+.++.+-...+.+..=+--||+..+ +|..+||+--.|+..++-..
T Consensus 75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-------kD~v~GIL~AKDLL~~~~~~------------------ 129 (293)
T COG4535 75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-------KDHVEGILLAKDLLPFMRSD------------------ 129 (293)
T ss_pred cHHHheeccccCCHHHHHHHHHHhccccCCcccCC-------chhhhhhhhHHHHHHHhcCC------------------
Confidence 46899999999999999999999988888999876 35788998666666641000
Q ss_pred ccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc
Q 022403 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (297)
Q Consensus 133 g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~ 212 (297)
.++| .++++.+.
T Consensus 130 ----------------------------------------------------------------~~~F---~i~~lLRP- 141 (293)
T COG4535 130 ----------------------------------------------------------------AEPF---DIKELLRP- 141 (293)
T ss_pred ----------------------------------------------------------------cccc---cHHHhccc-
Confidence 0112 25555543
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
-+-|..+..+--+|+-+...|-|--.|||. =|-+.|+||-.+|++.+.+-.
T Consensus 142 ----av~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVGdI 192 (293)
T COG4535 142 ----AVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVGDI 192 (293)
T ss_pred ----ceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhccc
Confidence 355557778888888888888899999998 468999999999999887665
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.49 Score=46.21 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=43.8
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHH
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe 113 (297)
...+..+..|+++.|++..+.+++.- .||+|.+ +||+|+|+..+++..+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~--------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED--------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC--------CcEEEEEEHHHHHHHHHh
Confidence 34567899999999999999999988 9999987 489999999999886543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.83 E-value=0.87 Score=47.92 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.++++.+...+-+-||.=.|.+|||.--||.+.. +.+|||+..||+..
T Consensus 221 T~p~~svd~~~~~feAml~m~r~~I~hl~V~e~g---------q~~Gilt~~dIl~l 268 (610)
T COG2905 221 TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDG---------QPLGILTLTDILRL 268 (610)
T ss_pred ccCceeecCcchHHHHHHHHHHhCCceeeeecCC---------eeeEEeeHHHHHHh
Confidence 5799999999999999999999999999999987 89999999999983
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=86.08 E-value=1.5 Score=43.38 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+.+|.++.+|.+++.++.+.+ .-+||+|. |+++|+||+.++++.|.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTG-GAILLVEN--GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCC-CCeEEeeC--CeEEEEEeHHHHHHHHhc
Confidence 678899999999999998765 56999994 799999999999999864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=2.3 Score=42.20 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=40.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.+..+..++++.|++..+.++..- .||+|.+ +||+|+|+..+++.-
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~--------~~~~g~~~~~~~~~~ 391 (400)
T PRK10070 346 APLAVDAQTPLSELLSHVGQAPCA-VPVVDED--------QQYVGIISKGMLLRA 391 (400)
T ss_pred CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC--------CcEEEEEEHHHHHHH
Confidence 457899999999999999997755 9999976 489999999999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 4e-11
Identities = 16/113 (14%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 185 RLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII 244
R ++ I + E K T R + + P + ++ + S+ + L + ++ +P+I
Sbjct: 96 RYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI 155
Query: 245 EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVKIS 297
+P + + +T +++ L+ S+ + +L + ++ +
Sbjct: 156 DPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIG-TYANIAMVR 207
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113
+++ + A L + +AP+ K+ ++G++ + I +
Sbjct: 45 SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK-------KQSFVGMLTITDFINILHR 96
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 32 SLQETLTAAFARI-----PVLSFPNVPG-GRVIEIMADTTIPDAVKILSECNILSAPVKI 85
+QET A I S+ +P R+I + ++ +L+ NI+SAP+
Sbjct: 3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPL-- 60
Query: 86 PDAPSSSDWKERYLGIVDYSAIILWVLE 113
++ G++ + + +
Sbjct: 61 -----WDSEANKFAGLLTMADFVNVIKY 83
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 4e-05
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 47 LSFPNVPG-GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS 105
S+ +P R+I + + ++ +L + +I+SAP+ R+ G++ +
Sbjct: 31 TSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK-------TSRFAGLLTTT 83
Query: 106 AIILWVL 112
I +
Sbjct: 84 DFINVIQ 90
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 7e-04
Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 31/138 (22%)
Query: 177 KDAPTAADRLHEDFYKVIL-QEEPFKSTTVRSIIKSYRW----------APFLP----VA 221
KDA + RL F+ ++ QEE + + +Y++ P + +
Sbjct: 58 KDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 222 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ-----SAVVQGLEGCKGRDWFDII 276
D + + + +KY NV ++P ++ + + + ++ G+ G G+ W +
Sbjct: 115 QRDRLYNDNQVFAKY---NVSRLQPYL-KLRQALLELRPAKNVLIDGVLGS-GKTW---V 166
Query: 277 ASQPISDLGLPFMSSDEV 294
A + ++
Sbjct: 167 ALDVCLSYKVQCKMDFKI 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.82 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.73 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.71 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.71 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.7 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.7 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.69 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.68 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.67 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.67 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.67 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.67 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.67 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.66 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.66 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.66 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.66 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.65 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.65 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.65 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.65 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.65 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.64 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.64 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.64 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.64 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.63 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.63 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.63 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.62 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.62 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.62 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.62 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.62 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.61 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.61 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.6 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.6 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.6 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.58 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.57 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.57 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.56 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.56 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.56 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.54 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.54 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.54 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.53 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.52 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.5 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.47 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.44 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.44 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.42 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.38 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.35 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.33 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.28 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.24 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.2 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.1 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.09 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.0 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.99 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.89 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.86 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.78 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.77 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 98.75 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 98.71 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 98.71 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 98.66 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.66 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 98.65 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 98.65 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.62 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 98.61 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 98.59 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 98.59 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 98.58 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 98.57 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 98.55 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 98.55 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 98.54 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 98.53 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 98.52 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 98.52 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 98.52 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 98.51 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 98.51 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 98.49 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 98.49 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 98.49 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 98.48 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 98.47 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 98.47 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 98.47 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 98.47 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 98.46 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 98.43 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 98.42 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 98.42 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 98.41 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 98.39 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 98.36 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 98.35 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 98.3 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 98.25 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 98.24 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 98.24 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.15 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 97.99 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 97.77 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 97.73 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 97.69 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 97.55 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 96.9 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 96.87 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.8 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 96.75 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 96.68 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.45 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 96.43 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 96.29 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 95.53 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.43 |
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=153.86 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=118.0
Q ss_pred HHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHH
Q 022403 35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (297)
Q Consensus 35 e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~ 114 (297)
..+...+..+||..+-. .+++.+++++|+.+|+++|.+|++.+.||+|.+ ++++|+|+..||+..+...
T Consensus 9 ~~~~~~l~~~~V~diM~---~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------g~lvGiit~~Dll~~~~~~ 77 (170)
T 4esy_A 9 RAIARAIRQVPIRDILT---SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN--------GHLVGIITESDFLRGSIPF 77 (170)
T ss_dssp HHHHHHHHTSBGGGGCC---SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT--------SCEEEEEEGGGGGGGTCCT
T ss_pred HHHHHHHcCCCHHHhcC---CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC--------ccEEEEEEHHHHHHHHhhc
Confidence 34566778999998874 589999999999999999999999999999976 4899999999998743322
Q ss_pred HHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHh
Q 022403 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (297)
Q Consensus 115 ~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L 194 (297)
....... + .....+ ......++
T Consensus 78 ~~~~~~~-----------------------~-----------------------------~~~~~~---~~~~~~~~--- 99 (170)
T 4esy_A 78 WIYEASE-----------------------I-----------------------------LSRAIP---APEVEHLF--- 99 (170)
T ss_dssp THHHHHH-----------------------H-----------------------------HTTTSC---HHHHHHHH---
T ss_pred cccchhh-----------------------h-----------------------------hhhccc---hhhHHhhh---
Confidence 2111000 0 000000 01112222
Q ss_pred hhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 195 ~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+...+.+|+++|+.. +++|.+++++.+++.+|.+++++++||+| +|+++||||+++|++.|...
T Consensus 100 ---~~~~~~~v~~im~~~----~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 100 ---ETGRKLTASAVMTQP----VVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp ---HHHTTCBHHHHCBCC----SCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCCC
T ss_pred ---ccccccchhhhcccC----cccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHhc
Confidence 223678999999876 99999999999999999999999999999 46999999999999987643
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=139.09 Aligned_cols=124 Identities=16% Similarity=0.284 Sum_probs=103.7
Q ss_pred CCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccc
Q 022403 53 PGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (297)
Q Consensus 53 ~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~ 132 (297)
|..+|+.+..++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||..++++..-.
T Consensus 23 P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~--------~~lvGiit~~Di~~~~~~~~~~--------------- 79 (156)
T 3k6e_A 23 PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE--------KQFVGTIGLRDIMAYQMEHDLS--------------- 79 (156)
T ss_dssp ETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC---------CBEEEEEEHHHHHHHHHHHTCC---------------
T ss_pred chhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC--------CcEEEEEEecchhhhhhhcccc---------------
Confidence 45799999999999999999999999999999875 3899999999999864432100
Q ss_pred ccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc
Q 022403 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (297)
Q Consensus 133 g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~ 212 (297)
. +...+++|+++|.+.
T Consensus 80 ----------------------------------------------------------~------~~~~~~~v~~im~~~ 95 (156)
T 3k6e_A 80 ----------------------------------------------------------Q------EIMADTDIVHMTKTD 95 (156)
T ss_dssp ----------------------------------------------------------H------HHHTTSBGGGTCBCS
T ss_pred ----------------------------------------------------------c------ccccccCHHHhhcCC
Confidence 0 112467899999876
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
+++|.+++++.+++.+|.++++ +||||. +|+++||||+++|++.+.+..+.
T Consensus 96 ----~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~~~~~~ 146 (156)
T 3k6e_A 96 ----VAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp ----CCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHHHHSCC
T ss_pred ----ceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHHHHhcc
Confidence 8999999999999999999875 999997 57999999999999999876654
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=131.25 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=118.0
Q ss_pred HHHHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 33 LQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 33 ~~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
.+..+...+..++|..+-.. + +.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||..+++
T Consensus 6 ~~~~l~~~l~~~~v~~im~~---~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 6 GTQLLADKLKKLQVKDFQSI---P-VVIHENVSVYDAICTMFLEDVGTLFVVDRD--------AVLVGVLSRKDLLRASI 73 (159)
T ss_dssp -CHHHHHHHTTCBGGGSCBC---C-CEEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHHT
T ss_pred hHHHHHHHHhhCCHHHHcCC---C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------CcEEEEEeHHHHHHHhh
Confidence 34668888999999998752 3 599999999999999999999999999965 38999999999998421
Q ss_pred HHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHH
Q 022403 113 ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYK 192 (297)
Q Consensus 113 e~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~ 192 (297)
.
T Consensus 74 ~------------------------------------------------------------------------------- 74 (159)
T 3fv6_A 74 G------------------------------------------------------------------------------- 74 (159)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCC---CeeEEeehHHHHHHHhhccC
Q 022403 193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP---DIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 193 ~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~---~i~niITQSaVI~~L~~~~g 269 (297)
.....+++|+++|.. +.+++.|.+++++.+++.+|.+++++++||+|.+ | +++|+||+++|++.+.+...
T Consensus 75 ----~~~~~~~~v~~~m~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l~~~~~ 147 (159)
T 3fv6_A 75 ----QQELTSVPVHIIMTR--MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKILVSLSE 147 (159)
T ss_dssp ----CSCTTTCBGGGTSEE--TTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHHHHHHT
T ss_pred ----cCcccCcCHHHHHcC--CCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHHHHHhh
Confidence 012346789999975 2348899999999999999999999999999964 5 89999999999999998776
Q ss_pred Cc
Q 022403 270 RD 271 (297)
Q Consensus 270 ~d 271 (297)
..
T Consensus 148 ~~ 149 (159)
T 3fv6_A 148 NE 149 (159)
T ss_dssp TC
T ss_pred cc
Confidence 53
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-17 Score=125.44 Aligned_cols=127 Identities=13% Similarity=0.171 Sum_probs=104.1
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|..++|..+-.. ..+++.+.+++|+.+|+++|.++++...||+|.+. ++++|+|+..||..++.
T Consensus 3 l~~~~v~~iM~~-~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~~-------- 66 (130)
T 3i8n_A 3 AQDVPVTQVMTP-RPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK-------DNIIGFVHRLELFKMQQ-------- 66 (130)
T ss_dssp ----CCTTTSCC-BCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST-------TCEEEECCHHHHHHHHH--------
T ss_pred cCcCCHhhCCCc-HHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CcEEEEEEHHHHHHHHh--------
Confidence 567778777653 35788999999999999999999999999999752 38999999999988310
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
+..
T Consensus 67 -----------------------------------------------------------------------------~~~ 69 (130)
T 3i8n_A 67 -----------------------------------------------------------------------------SGS 69 (130)
T ss_dssp -----------------------------------------------------------------------------TTT
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 011
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+++|+++|+ |++.|.+++++.+++.+|.+++++++||+|. +|+++||||+++|++.|.+
T Consensus 70 ~~~~v~~~m~-----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 70 GQKQLGAVMR-----PIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp TTSBHHHHSE-----ECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred CcCCHHHHhc-----CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHcC
Confidence 3567999994 4689999999999999999999999999996 4699999999999998864
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-17 Score=141.77 Aligned_cols=165 Identities=13% Similarity=0.180 Sum_probs=121.7
Q ss_pred HhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHH
Q 022403 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (297)
Q Consensus 40 ~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~ 119 (297)
++....+..+-. ++.+++.++.++|+.+|+++|.+||+.++||+|.+. ++|+|+++..||+..++.......
T Consensus 26 ~l~~~~~~d~m~-~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~-------~~lvGilt~~Dl~~~l~~~~~~~~ 97 (323)
T 3t4n_C 26 FLNSKTSYDVLP-VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT-------SRFAGLLTTTDFINVIQYYFSNPD 97 (323)
T ss_dssp HHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHCGG
T ss_pred HHHhCchHhhCC-CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC-------CeEEEEEEHHHHHHHHHHHHcCcc
Confidence 334444444443 367999999999999999999999999999999763 389999999999986554322110
Q ss_pred hhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCC
Q 022403 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (297)
Q Consensus 120 ~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~ 199 (297)
. ++.+ +.
T Consensus 98 ~----------------------------------------------------------------------~~~l---~~ 104 (323)
T 3t4n_C 98 K----------------------------------------------------------------------FELV---DK 104 (323)
T ss_dssp G----------------------------------------------------------------------GGGG---GG
T ss_pred h----------------------------------------------------------------------hHHH---HH
Confidence 0 0011 22
Q ss_pred CCccchhhHhhhccC--CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCC----CeeEEeehHHHHHHHhhccCCchh
Q 022403 200 FKSTTVRSIIKSYRW--APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP----DIKNYITQSAVVQGLEGCKGRDWF 273 (297)
Q Consensus 200 ~k~tkV~dI~~s~rw--aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~----~i~niITQSaVI~~L~~~~g~dwf 273 (297)
+....++++++...+ .+++.+.+++++.+++.+|.+++++++||+|.++. ++.|+||+.++++.+..+...
T Consensus 105 ~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~--- 181 (323)
T 3t4n_C 105 LQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE--- 181 (323)
T ss_dssp CBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG---
T ss_pred HHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc---
Confidence 334556777654433 34899999999999999999999999999997532 299999999999999866533
Q ss_pred hhhccccccccCCCc
Q 022403 274 DIIASQPISDLGLPF 288 (297)
Q Consensus 274 ~~i~~K~lselgLp~ 288 (297)
..+..++++++++++
T Consensus 182 ~~~~~~~v~~~~~~m 196 (323)
T 3t4n_C 182 THFLKIPIGDLNIIT 196 (323)
T ss_dssp GGGCCSBGGGTTCSB
T ss_pred hhhhhCcHHHcCCCC
Confidence 445577888887654
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=121.70 Aligned_cols=135 Identities=11% Similarity=0.176 Sum_probs=105.3
Q ss_pred hcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhh
Q 022403 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (297)
Q Consensus 42 a~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~ 121 (297)
-..++..+.-....+++.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||..++.+. .
T Consensus 6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~---~--- 71 (144)
T 2nyc_A 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN--------GYLINVYEAYDVLGLIKGG---I--- 71 (144)
T ss_dssp GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHTC-------
T ss_pred hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC--------CcEEEEEcHHHHHHHhccc---c---
Confidence 3456666443334688999999999999999999999999999975 3899999999998842110 0
Q ss_pred hccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCC
Q 022403 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (297)
Q Consensus 122 ~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k 201 (297)
+ ...
T Consensus 72 ---------------------------------------------------------------------~-------~~~ 75 (144)
T 2nyc_A 72 ---------------------------------------------------------------------Y-------NDL 75 (144)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ---------------------------------------------------------------------c-------ccC
Confidence 0 123
Q ss_pred ccchhhHhhhc--cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSY--RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~--rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++|+++|... .+.|++.|.+++++.+++.+|.+++++++||+|. +|+++|+||++++++.|.+.
T Consensus 76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHHC
T ss_pred CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHHhc
Confidence 56789988652 1135889999999999999999999999999996 47999999999999998653
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=124.28 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=105.2
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
++|..+-.. ..+++.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||..++......
T Consensus 5 ~~v~~im~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~G~vt~~dl~~~~~~~~~~------ 69 (152)
T 4gqw_A 5 YTVGEFMTK-KEDLHVVKPTTTVDEALELLVENRITGFPVIDED--------WKLVGLVSDYDLLALDSGDSTW------ 69 (152)
T ss_dssp SBGGGTSEE-STTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHTTCC----CC------
T ss_pred EEhhhccCC-CCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC--------CeEEEEEEHHHHHHhhcccCcc------
Confidence 455555432 3368899999999999999999999999999975 3899999999998742111000
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
..|.+.-.......++
T Consensus 70 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 85 (152)
T 4gqw_A 70 ----------------------------------------------------------------KTFNAVQKLLSKTNGK 85 (152)
T ss_dssp ----------------------------------------------------------------HHHHHHHTC-----CC
T ss_pred ----------------------------------------------------------------cchHHHHHHHHHhccc
Confidence 0000000000223568
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+|+++|... ++.|.+++++.+++.+|.+++++++||+|. +|+++|+||+++|++.+.+...
T Consensus 86 ~v~~~m~~~----~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~~~~ 146 (152)
T 4gqw_A 86 LVGDLMTPA----PLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQIKR 146 (152)
T ss_dssp BHHHHSEES----CCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC---
T ss_pred cHHHhcCCC----ceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHhccc
Confidence 999999874 788999999999999999999999999996 4699999999999999987654
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=123.30 Aligned_cols=116 Identities=9% Similarity=0.148 Sum_probs=98.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++.+.||+|.+. ++++|+|+..||..++.+
T Consensus 12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~-------~~lvGivt~~dl~~~~~~--------------------- 63 (130)
T 3hf7_A 12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSL-------DDAISMLRVREAYRLMTE--------------------- 63 (130)
T ss_dssp GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSG-------GGEEEEEEHHHHHHHHTS---------------------
T ss_pred HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC-------CcEEEEEEHHHHHHHHhc---------------------
Confidence 4689999999999999999999999999997642 489999999999884100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
...+..++|+++|+
T Consensus 64 --------------------------------------------------------------~~~~~~~~v~~~m~---- 77 (130)
T 3hf7_A 64 --------------------------------------------------------------KKEFTKEIMLRAAD---- 77 (130)
T ss_dssp --------------------------------------------------------------SSCCCHHHHHHHSB----
T ss_pred --------------------------------------------------------------cCccchhhHHHhcc----
Confidence 01234567899983
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
|++.|.+++++.+++.+|.+++++++||+|. +|+++||||+.++++.|.+
T Consensus 78 -~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 78 -EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp -CCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred -CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence 4688999999999999999999999999986 4699999999999999875
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=136.57 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=124.0
Q ss_pred HHHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHH
Q 022403 34 QETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (297)
Q Consensus 34 ~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe 113 (297)
.+.+..+++...|..+-. |..+++.++.++|+.+|+++|.++++.+.||+|.+. ++|+|||+..||+.+++.
T Consensus 12 ~~~~~~~l~~~~v~dim~-~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~ 83 (334)
T 2qrd_G 12 LKEIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKY 83 (334)
T ss_dssp HHHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhhCC-CCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHH
Confidence 345667788899999875 367899999999999999999999999999999752 489999999999987654
Q ss_pred HHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHH
Q 022403 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV 193 (297)
Q Consensus 114 ~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~ 193 (297)
..+.... | +.++.
T Consensus 84 ~~~~~~~-----------------------------~--------------------------------------~~~~~ 96 (334)
T 2qrd_G 84 YYQSSSF-----------------------------P--------------------------------------EAIAE 96 (334)
T ss_dssp HHHHCSC-----------------------------G--------------------------------------GGGGG
T ss_pred HhhccCC-----------------------------c--------------------------------------cHHHH
Confidence 3221100 0 00000
Q ss_pred hhhcCCCCccchhhHhhhccCCCc--eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCC----eeEEeehHHHHHHHhhc
Q 022403 194 ILQEEPFKSTTVRSIIKSYRWAPF--LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQSAVVQGLEGC 267 (297)
Q Consensus 194 L~~~e~~k~tkV~dI~~s~rwaPF--lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~----i~niITQSaVI~~L~~~ 267 (297)
+ +.+.-..++++.+..-..|+ +.|.++.++.+++.+|.+++.+++||+|..+++ +.|+||+.++++.+...
T Consensus 97 ~---~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~ 173 (334)
T 2qrd_G 97 I---DKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN 173 (334)
T ss_dssp G---GSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHH
T ss_pred H---hhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhh
Confidence 0 11111223333333334456 899999999999999999999999999975445 99999999999998764
Q ss_pred cCCchhhhhccccccccCC
Q 022403 268 KGRDWFDIIASQPISDLGL 286 (297)
Q Consensus 268 ~g~dwf~~i~~K~lselgL 286 (297)
... . .+..+++++++.
T Consensus 174 ~~~--~-~~~~~~v~~l~~ 189 (334)
T 2qrd_G 174 CKE--T-AMLRVPLNQMTI 189 (334)
T ss_dssp CGG--G-GGCCCBGGGSSC
T ss_pred ccc--h-hhhhCcHHHhCC
Confidence 322 1 234567777643
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=121.70 Aligned_cols=127 Identities=13% Similarity=0.179 Sum_probs=107.1
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|..++|..+-.. ..+++.+.+++|+.+|+++|.++++...||+|.+. ++++|+|+..||..++.+.
T Consensus 20 l~~~~v~diM~~-~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~~------ 85 (148)
T 3lv9_A 20 FEEKKIREIMVP-RTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK-------DDILGFVHIRDLYNQKINE------ 85 (148)
T ss_dssp GGTCBGGGTSEE-TTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST-------TSEEEEEEHHHHHHHHHHH------
T ss_pred cCCCCHHHcccc-HHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHhcC------
Confidence 567888887642 34789999999999999999999999999998752 2899999999998841100
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
.
T Consensus 86 -----------------------------------------------------------------------------~-- 86 (148)
T 3lv9_A 86 -----------------------------------------------------------------------------N-- 86 (148)
T ss_dssp -----------------------------------------------------------------------------S--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 1
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++|+++| . |++.|.+++++.+++.+|.+++++++||+|. +|+++||||++++++.|.+.
T Consensus 87 -~~~v~~~m-~----~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 87 -KIELEEIL-R----DIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp -CCCGGGTC-B----CCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHHT
T ss_pred -CccHHHhc-C----CCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhCc
Confidence 56788888 3 4789999999999999999999999999996 46999999999999998753
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=128.01 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=103.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||+.+..........
T Consensus 15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~~~~~~~--------------- 71 (180)
T 3sl7_A 15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDDN--------WTLVGVVSDYDLLALDSISGRSQND--------------- 71 (180)
T ss_dssp GCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHTCC-------------------------
T ss_pred CceeeCCCCcHHHHHHHHHHcCCCeEEEECCC--------CeEEEEEEHHHHHhhhhhccccCCc---------------
Confidence 67889999999999999999999999999975 4899999999998642211100000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+. | + .+. .-. ...++...+ ....+++|+++|+..
T Consensus 72 -------~~~~---~---------------------~--~~~----~~~-~~~~~~~~~---~~~~~~~v~~~m~~~--- 107 (180)
T 3sl7_A 72 -------TNLF---P---------------------D--VDS----TWK-TFNELQKLI---SKTYGKVVGDLMTPS--- 107 (180)
T ss_dssp ----------------------------------------------CCC-SHHHHHHHH---HTTTTCBHHHHSEES---
T ss_pred -------cccc---c---------------------c--ccc----hhh-hhHHHHHHH---hccccccHHHHhCCC---
Confidence 0000 0 0 000 000 001111111 234578999999865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
++.|.+++++.+++.+|.+++++++||+|. +|+++||||+++|++.+.+...
T Consensus 108 -~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~~~~~~ 159 (180)
T 3sl7_A 108 -PLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAALQIKR 159 (180)
T ss_dssp -CCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHHHHHHH
T ss_pred -ceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHHhh
Confidence 788999999999999999999999999996 4699999999999999987654
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=126.06 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=101.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||+.++....
T Consensus 35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~------------------- 87 (165)
T 3fhm_A 35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD--------GVVLGIFTERDLVKAVAGQG------------------- 87 (165)
T ss_dssp SCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHHHHHG-------------------
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHHHhcC-------------------
Confidence 468999999999999999999999999999965 48999999999998643221
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+++|+++|...
T Consensus 88 ---------------------------------------------------------------~~~~~~~v~~~m~~~-- 102 (165)
T 3fhm_A 88 ---------------------------------------------------------------AASLQQSVSVAMTKN-- 102 (165)
T ss_dssp ---------------------------------------------------------------GGGGTSBGGGTSBSS--
T ss_pred ---------------------------------------------------------------CccccCCHHHHhcCC--
Confidence 011357799999854
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
++.|.+++++.+++.+|.+++++++||+|. |+++|+||+++|++.+.+...
T Consensus 103 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~~~~ 153 (165)
T 3fhm_A 103 --VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIGEIE 153 (165)
T ss_dssp --CCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTCC--
T ss_pred --CeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHHH
Confidence 889999999999999999999999999997 699999999999999877553
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-17 Score=127.83 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=110.2
Q ss_pred HHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHH
Q 022403 39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (297)
Q Consensus 39 ~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a 118 (297)
..|..++|..+-.. ..+++.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||..+++...
T Consensus 10 ~~l~~~~v~~im~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~~--- 77 (150)
T 3lqn_A 10 DEFQQIFVKDLMIS-SEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM--------YKLHGLISTAMILDGILGLE--- 77 (150)
T ss_dssp HHHHHCBHHHHSEE-GGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHTBCSS---
T ss_pred HhhhcCChhhcccC-CCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC--------CCEEEEEEHHHHHHHHHhhc---
Confidence 34667788777653 3468999999999999999999999999999975 38999999999998521000
Q ss_pred HhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcC
Q 022403 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (297)
Q Consensus 119 ~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e 198 (297)
+. + + +
T Consensus 78 -------------------------------------------------------~~-------------~-~------~ 82 (150)
T 3lqn_A 78 -------------------------------------------------------RI-------------E-F------E 82 (150)
T ss_dssp -------------------------------------------------------SB-------------C-G------G
T ss_pred -------------------------------------------------------cc-------------c-h------h
Confidence 00 0 0 2
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
...+++|+++|... ++.|.+++++.+++.+|.++++ +||||. +|+++|+||+++|++.+.+...
T Consensus 83 ~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 83 RLEEMKVEQVMKQD----IPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp GGGGCBGGGTCBSS----CCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHHHC-
T ss_pred HHhcCCHHHHhcCC----CceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHHHhH
Confidence 23567899999854 8999999999999999999987 999996 4699999999999999987653
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=124.56 Aligned_cols=119 Identities=19% Similarity=0.236 Sum_probs=101.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++...||.|. ++++|+|+..||+.++...
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~---------~~~~Givt~~dl~~~~~~~-------------------- 71 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDG---------DDIAGIVTERDYARKVVLQ-------------------- 71 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTCSEEEEESS---------SSEEEEEEHHHHHHHSGGG--------------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEeeC---------CEEEEEEEHHHHHHHHHhc--------------------
Confidence 67899999999999999999999999999653 3899999999999841100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.....+++|+++|...
T Consensus 72 --------------------------------------------------------------~~~~~~~~v~~~m~~~-- 87 (157)
T 4fry_A 72 --------------------------------------------------------------ERSSKATRVEEIMTAK-- 87 (157)
T ss_dssp --------------------------------------------------------------TCCSSSCBHHHHSBSS--
T ss_pred --------------------------------------------------------------cCCccccCHHHHcCCC--
Confidence 0123578899999864
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
++.|.+++++.+++.+|.+++++++||+| +|+++|+||++++++.+.+....
T Consensus 88 --~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 88 --VRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp --CCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred --CcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999 47999999999999999876543
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=121.30 Aligned_cols=138 Identities=12% Similarity=0.219 Sum_probs=107.5
Q ss_pred hcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecC-CCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIP-DAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 42 a~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~-da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
..++|..+-. .+++.+..++|+.+|+++|.++++.+.||+|. +. ++++|+|+..||..++.+... .
T Consensus 11 ~~~~v~dim~---~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~-------~~~~Givt~~dl~~~~~~~~~-~-- 77 (164)
T 2pfi_A 11 HHVRVEHFMN---HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES-------QILVGIVQRAQLVQALQAEPP-S-- 77 (164)
T ss_dssp CSCBHHHHCB---CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT-------CBEEEEEEHHHHHHHHHC-------
T ss_pred cCCCHHHHcC---CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC-------CEEEEEEEHHHHHHHHHhhcc-c--
Confidence 3456665553 36788999999999999999999999999996 22 389999999999875221100 0
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
. ...
T Consensus 78 ----------------------------------------------------------------------~------~~~ 81 (164)
T 2pfi_A 78 ----------------------------------------------------------------------R------APG 81 (164)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ----------------------------------------------------------------------c------CCc
Confidence 0 012
Q ss_pred CccchhhHhhhcc-CCC-ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 201 KSTTVRSIIKSYR-WAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 201 k~tkV~dI~~s~r-waP-FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
..++|+++|.... ..| ++.|.+++++.+++.+|.+++++++||+| +|+++|+||+++|++.+.+..+.
T Consensus 82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~~~~~ 151 (164)
T 2pfi_A 82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISNLTNP 151 (164)
T ss_dssp CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHHSC
T ss_pred ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHhhhCC
Confidence 4567888887542 223 78899999999999999999999999999 47999999999999999886654
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=116.24 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=98.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++...||+| + ++++|+|+..||..++.+.
T Consensus 9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~--------~~~~G~it~~dl~~~~~~~-------------------- 59 (125)
T 1pbj_A 9 TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E--------GVRVGIVTTWDVLEAIAEG-------------------- 59 (125)
T ss_dssp CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T--------TEEEEEEEHHHHHHHHHHT--------------------
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C--------CeeEEEEeHHHHHHHHhcC--------------------
Confidence 3678999999999999999999999999999 4 3899999999998742110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
..+.+++|+++|...
T Consensus 60 ---------------------------------------------------------------~~~~~~~v~~~m~~~-- 74 (125)
T 1pbj_A 60 ---------------------------------------------------------------DDLAEVKVWEVMERD-- 74 (125)
T ss_dssp ---------------------------------------------------------------CCTTTSBHHHHCBCG--
T ss_pred ---------------------------------------------------------------CcccccCHHHHcCCC--
Confidence 113467899999864
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+..+.+++++.+++.+|.+++++++||+|. |++.|+||++++++.|.+
T Consensus 75 --~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 75 --LVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMA 122 (125)
T ss_dssp --GGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC-
T ss_pred --CeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 899999999999999999999999999996 699999999999998865
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-16 Score=136.85 Aligned_cols=176 Identities=13% Similarity=0.156 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 30 PHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 30 ~~~~~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
+..-.+.++.+|...+|..+.. |..+++.++.++|+.+|+++|.++++.+.||+|.+. ++++|||+..||+.
T Consensus 21 ~~~~~~~~~~~l~~~~v~dim~-p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~-------~~~vGivt~~Dll~ 92 (330)
T 2v8q_E 21 PESNSSVYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFIN 92 (330)
T ss_dssp --CCSCHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHH
T ss_pred cchhhHHHHHHHHcCcHhhhcc-CCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC-------CeEEEEEEHHHHHH
Confidence 3344566889999999999975 367999999999999999999999999999999762 38999999999998
Q ss_pred HHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhh
Q 022403 110 WVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHED 189 (297)
Q Consensus 110 wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~d 189 (297)
.+....+.... . . .. +. .....+
T Consensus 93 ~l~~~~~~~~~------~------~---~~-----l~-------------------------------------~~~~~~ 115 (330)
T 2v8q_E 93 ILHRYYKSALV------Q------I---YE-----LE-------------------------------------EHKIET 115 (330)
T ss_dssp HHHHHHHHHTT------T------C---CC-----GG-------------------------------------GCBHHH
T ss_pred HHHHHHhcccc------c------h---hH-----Hh-------------------------------------hccHHH
Confidence 65443221100 0 0 00 00 000111
Q ss_pred HHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 190 FYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 190 f~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+. .+++++|.. |++.|.++.++.+++.+|.+++++++||+|.++|+++|+||+.++++.+....+
T Consensus 116 ~~-----------~~~~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~ 180 (330)
T 2v8q_E 116 WR-----------EVYLQDSFK----PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT 180 (330)
T ss_dssp HH-----------HHHSSSSCC----CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC
T ss_pred HH-----------HHHhhcccC----CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhh
Confidence 11 124455543 589999999999999999999999999999745799999999999999987765
Q ss_pred CchhhhhccccccccC
Q 022403 270 RDWFDIIASQPISDLG 285 (297)
Q Consensus 270 ~dwf~~i~~K~lselg 285 (297)
...++.+..++++++.
T Consensus 181 ~~~~~~~~~~~v~~~~ 196 (330)
T 2v8q_E 181 EFPKPEFMSKSLEELQ 196 (330)
T ss_dssp SSSCCGGGGSBHHHHT
T ss_pred ccCchhhhcCCHHHhc
Confidence 4445555667777764
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=121.10 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=105.1
Q ss_pred hcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhh
Q 022403 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (297)
Q Consensus 42 a~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~ 121 (297)
++++|+.+-. .++..+.+++|+.+|+++|.++++...||+|.+ +++|+|+..||..+
T Consensus 3 ~s~~v~~~m~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---------~~~Givt~~dl~~~----------- 59 (128)
T 3gby_A 3 ASVTFSYLAE---TDYPVFTLGGSTADAARRLAASGCACAPVLDGE---------RYLGMVHLSRLLEG----------- 59 (128)
T ss_dssp TTCBGGGGCB---CCSCCEETTSBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEHHHHHTT-----------
T ss_pred cceEHHHhhc---CCcceECCCCCHHHHHHHHHHCCCcEEEEEECC---------EEEEEEEHHHHHHH-----------
Confidence 5677777765 357889999999999999999999999999973 89999999999862
Q ss_pred hccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCC
Q 022403 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (297)
Q Consensus 122 ~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k 201 (297)
+.. ....
T Consensus 60 -----------------------~~~--------------------------------------------------~~~~ 66 (128)
T 3gby_A 60 -----------------------RKG--------------------------------------------------WPTV 66 (128)
T ss_dssp -----------------------CSS--------------------------------------------------SCCT
T ss_pred -----------------------Hhh--------------------------------------------------CCcc
Confidence 100 0012
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++|+++|... +..+.+++++.+++.+|.+++++++||+|. +|+++|+||++++++.|.+.
T Consensus 67 ~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 67 KEKLGEELLET----VRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp TCBCCGGGCBC----CCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHHTT
T ss_pred cCcHHHHccCC----CcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHHhh
Confidence 36789999754 889999999999999999999999999986 56999999999999998763
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=120.39 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=100.4
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
..+|..+-. |..+++.+++++|+.+|+++|.++++...||+|.+. ++++|+|+..||..+
T Consensus 4 ~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~------------ 63 (129)
T 3jtf_A 4 ERTVADIMV-PRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDR-------DNIIGILLAKDLLRY------------ 63 (129)
T ss_dssp CCBHHHHCE-EGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSST-------TCEEEEEEGGGGGGG------------
T ss_pred CCCHHHhCc-cHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------CcEEEEEEHHHHHhH------------
Confidence 344444433 135788999999999999999999999999998742 389999999998772
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
+. + .+
T Consensus 64 ----------------------~~---------------------------------------------------~--~~ 68 (129)
T 3jtf_A 64 ----------------------ML---------------------------------------------------E--PA 68 (129)
T ss_dssp ----------------------GT---------------------------------------------------C--TT
T ss_pred ----------------------hc---------------------------------------------------c--CC
Confidence 10 0 24
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++|+++|+ |++.|.+++++.+++.+|.+++++++||+|. +|+++||||+++|++.|.+
T Consensus 69 ~~v~~~m~-----~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 69 LDIRSLVR-----PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp SCGGGGCB-----CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred cCHHHHhC-----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 56888884 3678999999999999999999999999996 4699999999999999875
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=121.21 Aligned_cols=116 Identities=19% Similarity=0.293 Sum_probs=98.6
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++...||+| + ++++|+|+..||..+++..
T Consensus 17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~--------~~~~Givt~~dl~~~~~~~-------------------- 67 (135)
T 2rc3_A 17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D--------EKLVGILTERDFSRKSYLL-------------------- 67 (135)
T ss_dssp CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T--------TEEEEEEEHHHHHHHGGGS--------------------
T ss_pred CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C--------CEEEEEEehHHHHHHHHHc--------------------
Confidence 5788999999999999999999999999998 4 3899999999998641100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.....+++|+++|...
T Consensus 68 --------------------------------------------------------------~~~~~~~~v~~~m~~~-- 83 (135)
T 2rc3_A 68 --------------------------------------------------------------DKPVKDTQVKEIMTRQ-- 83 (135)
T ss_dssp --------------------------------------------------------------SSCGGGSBGGGTSBCS--
T ss_pred --------------------------------------------------------------CCCcccCCHHHhccCC--
Confidence 0112467899999764
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+..+.+++++.+++.+|.+++++++||+| +|+++|+||++++++.+.+.
T Consensus 84 --~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 84 --VAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp --CCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC-
T ss_pred --CeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHhc
Confidence 89999999999999999999999999999 47999999999999998764
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=119.50 Aligned_cols=114 Identities=12% Similarity=0.240 Sum_probs=95.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+++++|+.+|+++|.++++...||+|.+. ++++|+|+..||..+
T Consensus 13 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~vGivt~~dl~~~------------------------ 61 (127)
T 3nqr_A 13 SQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPF------------------------ 61 (127)
T ss_dssp GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGG------------------------
T ss_pred HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC-------CcEEEEEEHHHHHHH------------------------
Confidence 3588999999999999999999999999998752 389999999998772
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+. +...+++|+++|+.
T Consensus 62 ----------~~---------------------------------------------------~~~~~~~v~~~m~~--- 77 (127)
T 3nqr_A 62 ----------MR---------------------------------------------------SDAEAFSMDKVLRT--- 77 (127)
T ss_dssp ----------GS---------------------------------------------------TTCCCCCHHHHCBC---
T ss_pred ----------Hh---------------------------------------------------ccCCCCCHHHHcCC---
Confidence 10 01135679999942
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.|.+++++.+++.+|.+++++++||+|. +|+++||||++++++.|.+
T Consensus 78 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 78 --AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp --CCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC--
T ss_pred --CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence 468999999999999999999999999997 4699999999999998753
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=129.66 Aligned_cols=135 Identities=16% Similarity=0.276 Sum_probs=105.8
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+++.+++++|+.+|+++|.+|++.+.||+|.+. ++++||++..||+.++.+......
T Consensus 11 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~-------~~~~Givt~~di~~~~~~~~~~~~-------------- 69 (280)
T 3kh5_A 11 NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGGSKYNL-------------- 69 (280)
T ss_dssp CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTT-------CBEEEEEEHHHHHHHTTTSGGGHH--------------
T ss_pred CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCC-------CeEEEEEEHHHHHHHhcccchhhh--------------
Confidence 35899999999999999999999999999999732 389999999999985321111000
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
+ .+ ....++++. .+++|+++|..
T Consensus 70 -----------~-------------------------~~------------~~~~~~~~~-------~~~~v~~im~~-- 92 (280)
T 3kh5_A 70 -----------I-------------------------RE------------KHERNFLAA-------INEPVREIMEE-- 92 (280)
T ss_dssp -----------H-------------------------HT------------TSTTCHHHH-------TTSBGGGTSBC--
T ss_pred -----------h-------------------------hh------------ccccchhHH-------hhhhHHHhcCC--
Confidence 0 00 011122221 25789999986
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+++.|.++.++.+++.+|.+++.+++||+|. +|+++||||+.++++.+.+...
T Consensus 93 --~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~ 145 (280)
T 3kh5_A 93 --NVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKID 145 (280)
T ss_dssp --SCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSC
T ss_pred --CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCC
Confidence 4899999999999999999999999999987 4799999999999999876654
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=115.78 Aligned_cols=113 Identities=20% Similarity=0.320 Sum_probs=96.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|.+.|.++++...||+|.+ ++++|+|+..||..++.+
T Consensus 9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~G~vt~~dl~~~~~~--------------------- 59 (122)
T 3kpb_A 9 KPPITAHSNISIMEAAKILIKHNINHLPIVDEH--------GKLVGIITSWDIAKALAQ--------------------- 59 (122)
T ss_dssp SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT--------SBEEEEECHHHHHHHHHT---------------------
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEEHHHHHHHHHh---------------------
Confidence 357889999999999999999999999999965 389999999999884110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
...+|+++|..
T Consensus 60 ------------------------------------------------------------------~~~~v~~~~~~--- 70 (122)
T 3kpb_A 60 ------------------------------------------------------------------NKKTIEEIMTR--- 70 (122)
T ss_dssp ------------------------------------------------------------------TCCBGGGTSBS---
T ss_pred ------------------------------------------------------------------cccCHHHHhcC---
Confidence 12268888865
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++.+.+++++.+++.+|.+++.+++||+|. +|+++|+||+.++++.|.+.
T Consensus 71 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 71 -NVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGGK 121 (122)
T ss_dssp -SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC--
T ss_pred -CCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhcC
Confidence 4889999999999999999999999999996 47999999999999998764
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=116.74 Aligned_cols=127 Identities=16% Similarity=0.285 Sum_probs=105.6
Q ss_pred HhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHH-HHHHHHHHHHH
Q 022403 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAI-ILWVLETAELA 118 (297)
Q Consensus 40 ~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dI-v~wvLe~~e~a 118 (297)
.+...+|..+-. .+++.+..++|+.+|.++|.++++...||+|.+ ++++|+|+..++ ..++.
T Consensus 4 ~l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~------ 66 (138)
T 2p9m_A 4 TLKNIKVKDVMT---KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE--------NKVIGIVTTTDIGYNLIR------ 66 (138)
T ss_dssp -CTTCBGGGTSB---CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT--------CBEEEEEEHHHHHHHHTT------
T ss_pred ccccCCHHHhhc---CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC--------CeEEEEEEHHHHHHHHHh------
Confidence 356777777764 378889999999999999999999999999975 389999999999 66310
Q ss_pred HhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcC
Q 022403 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (297)
Q Consensus 119 ~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e 198 (297)
..
T Consensus 67 ------------------------------------------------------------------------------~~ 68 (138)
T 2p9m_A 67 ------------------------------------------------------------------------------DK 68 (138)
T ss_dssp ------------------------------------------------------------------------------TC
T ss_pred ------------------------------------------------------------------------------hc
Confidence 01
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcC-----CceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~r-----l~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
...+++|+++|.. |++.+.+++++.+++.+|.+++ ++++||+|. +|++.|+||++++++.+.+
T Consensus 69 ~~~~~~v~~~m~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 69 YTLETTIGDVMTK----DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp CCSSCBHHHHSCS----SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred ccCCcCHHHHhCC----CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence 2346789999985 4899999999999999999999 999999996 4699999999999998865
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=124.81 Aligned_cols=128 Identities=12% Similarity=0.152 Sum_probs=104.3
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|..++|..+-. |..+++.+++++|+.+|+++|.++++...||+|.+. ++++|+|+..||..++.+
T Consensus 39 l~~~~v~diM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~------- 103 (172)
T 3lhh_A 39 LDERTISSLMV-PRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNV-------DDMVGIISAKQLLSESIA------- 103 (172)
T ss_dssp ----CTTTTSE-EGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSST-------TSEEEEEEHHHHHHHHHT-------
T ss_pred cCCCCHHHhCc-cHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CeEEEEEEHHHHHHHHhh-------
Confidence 55667766654 235789999999999999999999999999998741 389999999999883100
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
.
T Consensus 104 -----------------------------------------------------------------------------~-- 104 (172)
T 3lhh_A 104 -----------------------------------------------------------------------------G-- 104 (172)
T ss_dssp -----------------------------------------------------------------------------T--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.+++|+++| . |++.|.+++++.+++.+|.+++++++||+|. +|+++||||+.++++.|.+..
T Consensus 105 ~~~~v~~im-~----~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~~~ 166 (172)
T 3lhh_A 105 ERLELVDLV-K----NCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTGEF 166 (172)
T ss_dssp CCCCGGGGC-B----CCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHTTC
T ss_pred CcccHHHHh-c----CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhCCC
Confidence 256799999 3 4799999999999999999999999999996 469999999999999987643
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=115.77 Aligned_cols=128 Identities=17% Similarity=0.321 Sum_probs=105.1
Q ss_pred hcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhh
Q 022403 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA 121 (297)
Q Consensus 42 a~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~ 121 (297)
..++|..+-. .+++.+.+++|+.+|.++|.++++...||+| + ++++|+|+..||..++..
T Consensus 2 ~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~--------~~~~Givt~~dl~~~~~~-------- 61 (133)
T 2ef7_A 2 EEEIVKEYMK---TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G--------NKPVGIITERDIVKAIGK-------- 61 (133)
T ss_dssp CCCBGGGTSB---CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T--------TEEEEEEEHHHHHHHHHT--------
T ss_pred CcccHHHhcc---CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C--------CEEEEEEcHHHHHHHHhc--------
Confidence 3566666654 3688999999999999999999999999999 4 389999999999874110
Q ss_pred hccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCC
Q 022403 122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK 201 (297)
Q Consensus 122 ~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k 201 (297)
....
T Consensus 62 ----------------------------------------------------------------------------~~~~ 65 (133)
T 2ef7_A 62 ----------------------------------------------------------------------------GKSL 65 (133)
T ss_dssp ----------------------------------------------------------------------------TCCT
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0012
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
+++|+++|.. |+..+.+++++.+++.+|.+++.+++||+|. +|+++|+||+.++++.+.+...+
T Consensus 66 ~~~v~~~~~~----~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~~~~~ 129 (133)
T 2ef7_A 66 ETKAEEFMTA----SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDMFET 129 (133)
T ss_dssp TCBGGGTSEE----CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHC--
T ss_pred ccCHHHHcCC----CCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHHHHH
Confidence 4678999875 4889999999999999999999999999996 46999999999999998876543
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=122.37 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=106.3
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
++|..+-. .+++.+.+++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||..++.......
T Consensus 5 ~~v~dim~---~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------~~lvGivt~~dl~~~~~~~~~~~----- 68 (160)
T 2o16_A 5 IKVEDMMT---RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------KKLLGIVSQRDLLAAQESSLQRS----- 68 (160)
T ss_dssp CBGGGTSE---ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHHHCC-------
T ss_pred CcHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHHHHHhhccc-----
Confidence 45555443 367889999999999999999999999999965 38999999999998643321000
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
. ...+...++
T Consensus 69 ---------------------~-------------------------------------------------~~~~~~~~~ 78 (160)
T 2o16_A 69 ---------------------A-------------------------------------------------QGDSLAFET 78 (160)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred ---------------------c-------------------------------------------------cccchhccc
Confidence 0 000223578
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+|+++|.. +++.|.+++++.+++.+|.+++++++||+|. |+++|+||+++|++.+.+...
T Consensus 79 ~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~~~~ 138 (160)
T 2o16_A 79 PLFEVMHT----DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAINLLE 138 (160)
T ss_dssp BHHHHSCS----CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHHhcC----CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHhc
Confidence 89999986 4899999999999999999999999999996 699999999999999877553
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=121.65 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=106.0
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCccccee-cCCCCCCCccccceeEEEehHHHHHHHHHHHHHHH
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVK-IPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~-D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~ 119 (297)
|...+|..+-.. ..+++.+.+++|+.+|+++|.++++...||+ |.+. ++++|+|+..||..++...
T Consensus 17 l~~~~v~~iM~~-~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~-------~~lvGivt~~dl~~~~~~~----- 83 (153)
T 3oco_A 17 MNDKVASDVMVD-RTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDK-------DKIIGYAYNYDIVRQARID----- 83 (153)
T ss_dssp HHHCBHHHHSEE-GGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE-------EEEEEEEEHHHHHHHHHHH-----
T ss_pred cCCCEeeeEecc-hhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC-------CcEEEEEEHHHHHhHHhcC-----
Confidence 456788777642 2478999999999999999999999999999 6532 3899999999999842100
Q ss_pred hhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCC
Q 022403 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (297)
Q Consensus 120 ~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~ 199 (297)
T Consensus 84 -------------------------------------------------------------------------------- 83 (153)
T 3oco_A 84 -------------------------------------------------------------------------------- 83 (153)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+++|+++| . |++.|.+++++.+++.+|.+++++++||+|. +|+++||||++++++.|.+-
T Consensus 84 -~~~~v~~~m-~----~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 84 -DKAKISTIM-R----DIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp -TTSBGGGTC-B----CCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC-
T ss_pred -CCCcHHHHh-C----CCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhcc
Confidence 146789999 4 4899999999999999999999999999996 46999999999999999863
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=117.48 Aligned_cols=116 Identities=18% Similarity=0.285 Sum_probs=97.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++.+.||+|.+ ++++|+|+..|+... .
T Consensus 16 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~-------~---------------- 64 (133)
T 1y5h_A 16 AGVTCVGEHETLTAAAQYMREHDIGALPICGDD--------DRLHGMLTDRDIVIK-------G---------------- 64 (133)
T ss_dssp ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG--------GBEEEEEEHHHHHHT-------T----------------
T ss_pred CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC--------CeEEEEEeHHHHHHH-------H----------------
Confidence 367889999999999999999999999999865 489999999999841 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+. +.....+++|+++|...
T Consensus 65 ----------~~-------------------------------------------------~~~~~~~~~v~~~m~~~-- 83 (133)
T 1y5h_A 65 ----------LA-------------------------------------------------AGLDPNTATAGELARDS-- 83 (133)
T ss_dssp ----------GG-------------------------------------------------GTCCTTTSBHHHHHTTC--
T ss_pred ----------Hh-------------------------------------------------cCCCccccCHHHHhcCC--
Confidence 10 00113467899999864
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.+.+++++.+++.+|.+++++++||+|. |+++|+||++++++.+.+
T Consensus 84 --~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 84 --IYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp --CCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC-
T ss_pred --CEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence 899999999999999999999999999996 699999999999998754
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=130.12 Aligned_cols=134 Identities=11% Similarity=0.189 Sum_probs=107.7
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
..||..+.-.-..+++.+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+.++.+.
T Consensus 186 ~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~--------~~~~Giit~~dl~~~~~~~-------- 249 (323)
T 3t4n_C 186 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN--------GYLINVYEAYDVLGLIKGG-------- 249 (323)
T ss_dssp CSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEETTHHHHHHHTT--------
T ss_pred hCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEeHHHHHHHHhhc--------
Confidence 446666632224678999999999999999999999999999975 4899999999999842110
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
.+. ..+
T Consensus 250 -------------------------------------------------------------------~~~-------~~~ 255 (323)
T 3t4n_C 250 -------------------------------------------------------------------IYN-------DLS 255 (323)
T ss_dssp -------------------------------------------------------------------HHH-------HTT
T ss_pred -------------------------------------------------------------------hhh-------hcc
Confidence 011 024
Q ss_pred cchhhHhhhc--cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 203 TTVRSIIKSY--RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 203 tkV~dI~~s~--rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++|+++|+.. ...|++.+.+++++.+++.+|.+++++++||||. +|+++||||+++|++.|.+.
T Consensus 256 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 256 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp SBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT-TSBEEEEEEHHHHHHHHHHC
T ss_pred CCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence 6788888762 1126899999999999999999999999999996 46999999999999999764
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=116.27 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=106.8
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|..++|..+-. .+++.+.+++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||... .
T Consensus 4 l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~-------~-- 63 (138)
T 2yzi_A 4 DMKAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD--------GNVVGFFTKSDIIRR-------V-- 63 (138)
T ss_dssp CTTSBGGGTCB---CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHH-------T--
T ss_pred hhhhhHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHH-------H--
Confidence 45667776664 478999999999999999999999999999964 389999999999852 1
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
+. + ...
T Consensus 64 ------------------------~~-------------------------~-------------------------~~~ 69 (138)
T 2yzi_A 64 ------------------------IV-------------------------P-------------------------GLP 69 (138)
T ss_dssp ------------------------TT-------------------------T-------------------------CCC
T ss_pred ------------------------Hh-------------------------c-------------------------CCc
Confidence 10 0 012
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
.+++|+++|... ++.+.+++++.+++.+|.+++++++ |+|. +|+++|+||++++++.+.+...
T Consensus 70 ~~~~v~~~m~~~----~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 70 YDIPVERIMTRN----LITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp TTSBGGGTCBCS----CCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHCCSC
T ss_pred ccCCHHHHhhCC----CeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHHHHH
Confidence 457899999764 8999999999999999999999999 9996 4699999999999999987553
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-16 Score=121.66 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=96.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++.+.||+|.+. ++++|+|+..||..++..
T Consensus 13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~-------~~~vGivt~~dl~~~~~~--------------------- 64 (136)
T 3lfr_A 13 SQMISIKATQTPREFLPAVIDAAHSRYPVIGESH-------DDVLGVLLAKDLLPLILK--------------------- 64 (136)
T ss_dssp GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGGGGS---------------------
T ss_pred HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHHh---------------------
Confidence 5788999999999999999999999999998752 389999999999873100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+.+|+++|+
T Consensus 65 ---------------------------------------------------------------~~~~~~~v~~~m~---- 77 (136)
T 3lfr_A 65 ---------------------------------------------------------------ADGDSDDVKKLLR---- 77 (136)
T ss_dssp ---------------------------------------------------------------SSGGGCCGGGTCB----
T ss_pred ---------------------------------------------------------------ccCCCcCHHHHcC----
Confidence 0113567899984
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|++.|.+++++.+++.+|.+++++.+||+|. +|+++||||++++++.|.+-
T Consensus 78 -~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 78 -PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp -CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC---
T ss_pred -CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhCC
Confidence 3688999999999999999999999999997 46999999999999988753
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=122.24 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=112.8
Q ss_pred HHhhcCccccCCCCCC-CCcEEe--cCCCCHHHHHHHHHHCCCccccee--cCCCCCCCccccceeEEEehHHHHHHHHH
Q 022403 39 AAFARIPVLSFPNVPG-GRVIEI--MADTTIPDAVKILSECNILSAPVK--IPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (297)
Q Consensus 39 ~~fa~IPVsSfP~~~~-~~VIeI--~~d~sI~dAvkiLse~nIlsAPV~--D~da~~~~~w~dryiGiVd~~dIv~wvLe 113 (297)
.++..++|..+-.... .+++.+ .+++|+.+|+++|.++++.+.||+ |.+ ++++|+|+..||..++..
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~--------~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES--------QRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT--------CBEEEEEEHHHHHHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC--------CeEEEEEEHHHHHHHHHh
Confidence 4456777777765421 237788 999999999999999999999999 443 489999999999987543
Q ss_pred HHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHH
Q 022403 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV 193 (297)
Q Consensus 114 ~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~ 193 (297)
...... ++-.+.. . ......+.
T Consensus 78 ~~~~~~-----------~~~~~~~-------~----------------------------~~~~~~~~------------ 99 (185)
T 2j9l_A 78 ARKKQD-----------GVVSTSI-------I----------------------------YFTEHSPP------------ 99 (185)
T ss_dssp HHTSCS-----------CCCTTCE-------E----------------------------ECSSSCCC------------
T ss_pred hcccCC-----------Cccccce-------e----------------------------ecccCCcc------------
Confidence 211000 0000000 0 00000000
Q ss_pred hhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCc
Q 022403 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD 271 (297)
Q Consensus 194 L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~d 271 (297)
.......+++|+++|... ++.|.+++++.+++.+|.+++++++||+| +|+++|+||+++|++.+.+....+
T Consensus 100 -~~~~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~~~~~~~ 170 (185)
T 2j9l_A 100 -LPPYTPPTLKLRNILDLS----PFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQMANQD 170 (185)
T ss_dssp -CCTTCCCCEECGGGEESS----CCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHCC--
T ss_pred -cccccccCccHHHhhCcC----CeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHHHhhccc
Confidence 001234678899999764 89999999999999999999999999999 579999999999999999877654
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=117.65 Aligned_cols=131 Identities=12% Similarity=0.122 Sum_probs=103.0
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcc-cceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILS-APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIls-APV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~ 132 (297)
..+++.+.+++|+.+|+++|.++++.+ .||+|.+ +++|+|+..||..++.... . .
T Consensus 23 ~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~---------~~vGivt~~dl~~~~~~~~--~-~------------ 78 (157)
T 1o50_A 23 SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN---------KLVGMIPVMHLLKVSGFHF--F-G------------ 78 (157)
T ss_dssp CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT---------EEEEEEEHHHHHHHHHHHH--H-C------------
T ss_pred cCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC---------EEEEEEEHHHHHHHHhhhH--H-h------------
Confidence 357899999999999999999999999 9999976 7999999999998644221 0 0
Q ss_pred ccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc
Q 022403 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (297)
Q Consensus 133 g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~ 212 (297)
.+. . ...|.+ ......+++|+++|..
T Consensus 79 -----------~~~--~-------------------------------------~~~~~~---~~~~~~~~~v~~im~~- 104 (157)
T 1o50_A 79 -----------FIP--K-------------------------------------EELIRS---SMKRLIAKNASEIMLD- 104 (157)
T ss_dssp -----------CCC-------------------------------------------------CCCCCSSCBHHHHCBC-
T ss_pred -----------hhc--c-------------------------------------HHHHHH---HHHHHcCCcHHHHcCC-
Confidence 000 0 001110 1133467899999973
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++|.+++++.+++.+|.+++++++||+|. +|+++|+||+++|++.+.+.
T Consensus 105 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 105 ----PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp ----CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHS
T ss_pred ----CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHHHh
Confidence 578999999999999999999999999996 46999999999999998764
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=117.53 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=102.4
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
++|..+.. .+++.+.+++|+.+|+++|.++++...||+|.+. .++++|+|+..||..++.+
T Consensus 5 ~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~------~~~~~Givt~~dl~~~~~~---------- 65 (141)
T 2rih_A 5 IRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDN------PKRPVAVVSERDILRAVAQ---------- 65 (141)
T ss_dssp CBGGGGCC---SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE------EEEEEEEEEHHHHHHHHHT----------
T ss_pred eEHHHHhc---CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC------cceeEEEEEHHHHHHHHhc----------
Confidence 45555553 4789999999999999999999999999999761 0279999999999884210
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
....++
T Consensus 66 --------------------------------------------------------------------------~~~~~~ 71 (141)
T 2rih_A 66 --------------------------------------------------------------------------RLDLDG 71 (141)
T ss_dssp --------------------------------------------------------------------------TCCTTS
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 001256
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+|+++|.. |++.|.++ ++.+++.+|.+++++++||+|. +|+++|+||++++++.+..+
T Consensus 72 ~v~~~m~~----~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~~ 129 (141)
T 2rih_A 72 PAMPIANS----PITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERAIL 129 (141)
T ss_dssp BSGGGCBC----CCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHHHH
T ss_pred CHHHHcCC----CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHHHH
Confidence 78999875 48999999 9999999999999999999996 47999999999998877654
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=121.46 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=107.4
Q ss_pred HhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHH
Q 022403 40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (297)
Q Consensus 40 ~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~ 119 (297)
.|..++|..+... ..+++.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||..++...
T Consensus 7 ~l~~~~v~~im~~-~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------~~~~Givt~~dl~~~~~~~----- 72 (157)
T 2emq_A 7 EFMQMTVKPFLIP-ADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS--------YKLHGLISMTMMMDAILGL----- 72 (157)
T ss_dssp ---CCBSTTTCEE-GGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT--------CCEEEEEEHHHHHHHSBCS-----
T ss_pred hHhhCcHHhhccC-CccceEECCCCcHHHHHHHHHHCCceEEEEEcCC--------CCEEEEeeHHHHHHHHhcc-----
Confidence 3567788777642 2378899999999999999999999999999975 3899999999998841000
Q ss_pred hhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCC
Q 022403 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (297)
Q Consensus 120 ~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~ 199 (297)
.. + +.+.
T Consensus 73 -----------------------------~~----------------------------------------~----~~~~ 79 (157)
T 2emq_A 73 -----------------------------ER----------------------------------------I----EFER 79 (157)
T ss_dssp -----------------------------SS----------------------------------------B----CGGG
T ss_pred -----------------------------cc----------------------------------------c----chHH
Confidence 00 0 0012
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+.+++|+++|... ++.|.+++++.+++.+|.++++ +||||. +|+++|+||+++|++.+.....
T Consensus 80 ~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 80 LETMKVEEVMNRN----IPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp GGTCBGGGTCBCC----CCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHTTC
T ss_pred hcCCcHHHHhCCC----CceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHHhh
Confidence 3567899999864 8999999999999999999988 999996 4699999999999999987654
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=118.38 Aligned_cols=121 Identities=10% Similarity=0.138 Sum_probs=101.5
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
.+|..+-.. ..+++.+.+++|+.+|+++|.++++...||+|.+ ++++|+|+..||..++.+
T Consensus 28 ~~v~dim~~-~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~---------- 88 (149)
T 3k2v_A 28 LRVNDIMHT-GDEIPHVGLQATLRDALLEITRKNLGMTAICDDD--------MNIIGIFTDGDLRRVFDT---------- 88 (149)
T ss_dssp SBGGGTSBC-GGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT--------CBEEEEEEHHHHHHHHCS----------
T ss_pred cCHHHHhcC-CCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC--------CcEEEEecHHHHHHHHhc----------
Confidence 567666542 2378999999999999999999999999999965 389999999999884100
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
...+.++
T Consensus 89 -------------------------------------------------------------------------~~~~~~~ 95 (149)
T 3k2v_A 89 -------------------------------------------------------------------------GVDMRDA 95 (149)
T ss_dssp -------------------------------------------------------------------------SSCCTTC
T ss_pred -------------------------------------------------------------------------CCCcccC
Confidence 0123567
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+|+++|... ++.|.+++++.+++.+|.+++++++||+|.+ +++|+||+++|++
T Consensus 96 ~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~Giit~~dil~ 148 (149)
T 3k2v_A 96 SIADVMTRG----GIRIRPGTLAVDALNLMQSRHITCVLVADGD--HLLGVVHMHDLLR 148 (149)
T ss_dssp BHHHHSEES----CCEECTTCBHHHHHHHHHHHTCSEEEEEETT--EEEEEEEHHHHTC
T ss_pred cHHHHcCCC----CeEECCCCCHHHHHHHHHHcCCCEEEEecCC--EEEEEEEHHHhhc
Confidence 899999865 7899999999999999999999999999964 9999999999874
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=119.64 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=106.6
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|...+|..+-.. ..+++.+.+++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||..++....
T Consensus 11 l~~~~v~~im~~-~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~--------~~lvGivt~~dl~~~~~~~~----- 76 (159)
T 1yav_A 11 LLEATVGQFMIE-ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS--------YRLHGLIGTNMIMNSIFGLE----- 76 (159)
T ss_dssp CTTCBHHHHSEE-GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT--------CBEEEEEEHHHHHHHHBCSS-----
T ss_pred HhHhhHHHHhCC-ccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC--------CCEEEEeEHHHHHHHhhhhc-----
Confidence 345666655531 2368899999999999999999999999999975 38999999999988421000
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
. + ..+.+
T Consensus 77 --------------------------------------------------------------------~-~----~~~~~ 83 (159)
T 1yav_A 77 --------------------------------------------------------------------R-I----EFEKL 83 (159)
T ss_dssp --------------------------------------------------------------------S-B----CGGGT
T ss_pred --------------------------------------------------------------------c-c----chhhh
Confidence 0 0 00124
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
.+++|+++|... ++.|.+++++.+++.+|.++++ +||+|. +|+++|+||+++|++.+.+....
T Consensus 84 ~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~~~~~ 146 (159)
T 1yav_A 84 DQITVEEVMLTD----IPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNKHIRS 146 (159)
T ss_dssp TTSBHHHHSBCS----CCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHHHC--
T ss_pred ccCCHHHhcCCC----CceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHHHHHh
Confidence 567899999874 8999999999999999999987 999997 46999999999999999876543
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=124.52 Aligned_cols=127 Identities=11% Similarity=0.139 Sum_probs=104.0
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHC---CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHH
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC---NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA 119 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~---nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~ 119 (297)
...+..+- ..+++.++.++|+.+|++.|.++ ++...||+|.+ ++++|+|+..|++. +
T Consensus 53 ~~~v~~iM---~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~--------~~lvGivt~~dll~--------~- 112 (205)
T 3kxr_A 53 ENEIGRYT---DHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA--------DKYLGTVRRYDIFK--------H- 112 (205)
T ss_dssp TTCGGGGC---BCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT--------CBEEEEEEHHHHTT--------S-
T ss_pred cchHHhhc---cCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC--------CeEEEEEEHHHHHh--------C-
Confidence 33444444 34789999999999999999998 89999999975 48999999888754 1
Q ss_pred hhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCC
Q 022403 120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP 199 (297)
Q Consensus 120 ~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~ 199 (297)
T Consensus 113 -------------------------------------------------------------------------------- 112 (205)
T 3kxr_A 113 -------------------------------------------------------------------------------- 112 (205)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~ 274 (297)
..+++|++||... ++.|.+++++.+++.+|.+|+++.+||||. +|+++||||..+|++.+.+....|.+.
T Consensus 113 ~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~e~~ed~~~ 182 (205)
T 3kxr_A 113 EPHEPLISLLSED----SRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVREHYEAQLMA 182 (205)
T ss_dssp CTTSBGGGGCCSS----CCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHHHHC-----
T ss_pred CCcchHHHHhcCC----CeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHHHHHHHHHH
Confidence 0246799999764 899999999999999999999999999997 469999999999999999887766443
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-15 Score=119.92 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=102.0
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|..++|..+-.. ..+++.+++++|+.+|+++|.++++...||+|.+. ++++|+|+..||..+
T Consensus 35 l~~~~v~diM~~-~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~---------- 96 (156)
T 3oi8_A 35 FSDLEVRDAMIT-RSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDK-------DEVLGILHAKDLLKY---------- 96 (156)
T ss_dssp HTTCBGGGTCEE-GGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGG----------
T ss_pred cCCCCHhheeee-HHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC-------CcEEEEEEHHHHHHH----------
Confidence 567888887652 34789999999999999999999999999999752 389999999998872
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
+. +.
T Consensus 97 ------------------------~~---------------------------------------------------~~- 100 (156)
T 3oi8_A 97 ------------------------MF---------------------------------------------------NP- 100 (156)
T ss_dssp ------------------------SS---------------------------------------------------CG-
T ss_pred ------------------------HH---------------------------------------------------cC-
Confidence 10 00
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
.+++|+++|+ |++.|.+++++.+++.+|.+++++++||+|. +|+++||||+++|++
T Consensus 101 ~~~~v~~im~-----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dile 156 (156)
T 3oi8_A 101 EQFHLKSILR-----PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDIIE 156 (156)
T ss_dssp GGCCHHHHCB-----CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHCC
T ss_pred CcccHHHHcC-----CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhcC
Confidence 3467999994 3688999999999999999999999999997 469999999999863
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=120.20 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=109.9
Q ss_pred CCCHHHH--HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehH
Q 022403 30 PHSLQET--LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS 105 (297)
Q Consensus 30 ~~~~~e~--Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~ 105 (297)
.++..|+ ++.. |..++|..+-. |..+++.+++++|+.+|+++|.++++.+.||+|.+. ++++|||+..
T Consensus 18 ~l~~~e~~~i~~~l~l~~~~v~diM~-~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~ 89 (173)
T 3ocm_A 18 AFGVEERNMVSGVLTLAERSIRSIMT-PRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSL-------DEVVGIGRAK 89 (173)
T ss_dssp CCCHHHHHHHHHHHHHTTSCSTTTSE-EGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSST-------TSEEEEEEHH
T ss_pred CcCHHHHHHHHHHhccCCCCHHHhCC-cHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CCEEEEEEHH
Confidence 3444444 4443 56788877764 245789999999999999999999999999998652 3899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhh
Q 022403 106 AIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADR 185 (297)
Q Consensus 106 dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~ 185 (297)
||..++.+.
T Consensus 90 Dl~~~~~~~----------------------------------------------------------------------- 98 (173)
T 3ocm_A 90 DLVADLITE----------------------------------------------------------------------- 98 (173)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHhcC-----------------------------------------------------------------------
Confidence 999842100
Q ss_pred hhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 186 LHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 186 ~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+++|+ +++ |++.|.+++++.+++.+|.+++++++||+|. +|+++||||..+|++.|.
T Consensus 99 ---------------~~~~v~-~~~-----~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~ 156 (173)
T 3ocm_A 99 ---------------GRVRRN-RLR-----DPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIA 156 (173)
T ss_dssp ---------------SSCCGG-GSB-----CCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHH
T ss_pred ---------------CcchhH-hcC-----CCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHh
Confidence 134566 442 4688999999999999999999999999986 469999999999999998
Q ss_pred hcc
Q 022403 266 GCK 268 (297)
Q Consensus 266 ~~~ 268 (297)
+..
T Consensus 157 ~~i 159 (173)
T 3ocm_A 157 GEF 159 (173)
T ss_dssp CCC
T ss_pred CcC
Confidence 643
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=122.45 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=103.8
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
++|..+-. .+++.+..++|+.+|+++|.++++...||+|.+ ++++|+|+..||..++...
T Consensus 9 ~~v~~im~---~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~--------g~~vGivt~~dl~~~~~~~--------- 68 (184)
T 1pvm_A 9 MRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------GNDVGLLSERSIIKRFIPR--------- 68 (184)
T ss_dssp CBGGGTSB---TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------SCEEEEEEHHHHHHHTGGG---------
T ss_pred cCHHHhcC---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEeHHHHHHHHhhc---------
Confidence 45555543 478999999999999999999999999999865 3899999999998741100
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
.....+.
T Consensus 69 -------------------------------------------------------------------------~~~~~~~ 75 (184)
T 1pvm_A 69 -------------------------------------------------------------------------NKKPDEV 75 (184)
T ss_dssp -------------------------------------------------------------------------CCCGGGS
T ss_pred -------------------------------------------------------------------------ccCcccC
Confidence 0122456
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+|+++|.. |++.|.+++++.+++.+|.+++++++||+|. +|+++|+||+++|++.+.+
T Consensus 76 ~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 76 PIRLVMRK----PIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp BGGGTSBS----SCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSCH
T ss_pred CHHHHhCC----CCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHh
Confidence 79999976 4899999999999999999999999999996 3699999999999987765
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=126.74 Aligned_cols=125 Identities=17% Similarity=0.220 Sum_probs=104.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+.++.+..+...
T Consensus 164 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~~~~~~--------------- 220 (296)
T 3ddj_A 164 TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD--------NKVVGIVTVVNAIKQLAKAVDKLD--------------- 220 (296)
T ss_dssp CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHHHHHHHHTC---------------
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHHHHhhcC---------------
Confidence 578899999999999999999999999999965 489999999999986442211100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. +...+.+|+++|..
T Consensus 221 -----------------------------------------------------~---------~~~~~~~v~~~m~~--- 235 (296)
T 3ddj_A 221 -----------------------------------------------------P---------DYFYGKVVKDVMVT--- 235 (296)
T ss_dssp -----------------------------------------------------T---------HHHHTCBHHHHSBC---
T ss_pred -----------------------------------------------------h---------hhhcCcCHHHHhCC---
Confidence 0 11246789999986
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
|++.|.+++++.+++.+|.+++++++||+|. +|+++||||+++|++.|.+...
T Consensus 236 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 236 -NLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHHILV 288 (296)
T ss_dssp -CCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHH
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEcHHHHHHHHHHHhc
Confidence 4899999999999999999999999999997 4699999999999999987654
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=126.87 Aligned_cols=138 Identities=10% Similarity=0.143 Sum_probs=109.2
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
+...+|+.+-. .+++.+++++|+.+|+++|.++++.++||+| + +++|+++..||+.++....+.
T Consensus 17 ~~~~~V~dim~---~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------~l~GivT~~Di~~~~~~~~~~--- 80 (296)
T 3ddj_A 17 FQGMNIETLMI---KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------KIEGLLTTRDLLSTVESYCKD--- 80 (296)
T ss_dssp TCCSSGGGTCE---ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S---------SEEEEEEHHHHHGGGTTCC-----
T ss_pred hcccCHHHhcc---CCCcEECCCccHHHHHHHHHHCCCceEEEEC-C---------eEEEEEeHHHHHHHhcccccc---
Confidence 44556665553 4789999999999999999999999999999 4 899999999999852211000
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
.....+|++.
T Consensus 81 ---------------------------------------------------------------~~~~~~~~~~------- 90 (296)
T 3ddj_A 81 ---------------------------------------------------------------SCSQGDLYHI------- 90 (296)
T ss_dssp ----------------------------------------------------------------CCHHHHHHH-------
T ss_pred ---------------------------------------------------------------cccchhhHHH-------
Confidence 0112334422
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
.+.+|+++|... ++.|.+++++.+++.+|.+++++++||+|. +++++||||+.++++.+.....
T Consensus 91 ~~~~v~~im~~~----~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~lvGivt~~dl~~~~~~~~~ 154 (296)
T 3ddj_A 91 STTPIIDYMTPN----PVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDLDE 154 (296)
T ss_dssp HTSBGGGTSEES----CCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGSCC
T ss_pred hcccHHHhccCC----CEEEcCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHhhhcccc
Confidence 367899999864 889999999999999999999999999987 4699999999999988765443
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=124.63 Aligned_cols=136 Identities=12% Similarity=0.196 Sum_probs=107.3
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
..||..+...-..+++.+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+.++.+.
T Consensus 181 ~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~--------~~~~Giit~~dl~~~~~~~-------- 244 (334)
T 2qrd_G 181 RVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE--------GTLLNVYESVDVMHLIQDG-------- 244 (334)
T ss_dssp CCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEETHHHHHHHTTS--------
T ss_pred hCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCC--------CcEEEEEEHHHHHHHhhcc--------
Confidence 467766532224678899999999999999999999999999965 3899999999998841100
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
. + ...+
T Consensus 245 ----------------------~---------------------------------------------~-------~~~~ 250 (334)
T 2qrd_G 245 ----------------------D---------------------------------------------Y-------SNLD 250 (334)
T ss_dssp ----------------------C---------------------------------------------G-------GGGG
T ss_pred ----------------------c---------------------------------------------c-------cccc
Confidence 0 0 0124
Q ss_pred cchhhHhhhc--cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 203 TTVRSIIKSY--RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 203 tkV~dI~~s~--rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
++|+++|... .+.|++.|.+++++.+++.+|.+++++++||||. +|+++||||+++|++.+.+...
T Consensus 251 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~Giit~~dil~~~~~~~~ 318 (334)
T 2qrd_G 251 LSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIYDKT 318 (334)
T ss_dssp SBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT-TCBEEEEEEHHHHHHHHHSCCC
T ss_pred CcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHHhccc
Confidence 5688888641 1135889999999999999999999999999996 4699999999999999987654
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-15 Score=126.32 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=49.1
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
..+.+|++||+. .+++.+.+++++.+++.+|.+++++++||+|.+ |+++||||..++++..
T Consensus 182 ~~~~~v~~im~~---~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~~ 242 (245)
T 3l2b_A 182 VQSLPVDYVMTK---DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLISTH 242 (245)
T ss_dssp GGGSBHHHHSBC---TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEECC------
T ss_pred hcCCceeeEecC---CccEEECCCCcHHHHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhchh
Confidence 356789999983 238899999999999999999999999999974 7999999999998764
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=121.27 Aligned_cols=122 Identities=11% Similarity=0.146 Sum_probs=102.3
Q ss_pred cccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccc
Q 022403 46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG 125 (297)
Q Consensus 46 VsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~ 125 (297)
++++-.....+++.+.+++|+.||.++|.++++.+.||+|.+ ++++|+|+..||...
T Consensus 12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~l~Givt~~dl~~~--------------- 68 (213)
T 1vr9_A 12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE--------GHFRGVVNKEDLLDL--------------- 68 (213)
T ss_dssp -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT--------SBEEEEEEGGGGTTS---------------
T ss_pred ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------CEEEEEEEHHHHHhh---------------
Confidence 333333345688999999999999999999999999999965 389999999987651
Q ss_pred cccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccch
Q 022403 126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV 205 (297)
Q Consensus 126 ~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV 205 (297)
+ .+++|
T Consensus 69 -------------------~-------------------------------------------------------~~~~v 74 (213)
T 1vr9_A 69 -------------------D-------------------------------------------------------LDSSV 74 (213)
T ss_dssp -------------------C-------------------------------------------------------TTSBS
T ss_pred -------------------c-------------------------------------------------------CCCcH
Confidence 0 13569
Q ss_pred hhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 206 ~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+++|... ++.+.+++++.+++.+|.+++++++||+|. +|+++||||..++++.+....+
T Consensus 75 ~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~~~~ 133 (213)
T 1vr9_A 75 FNKVSLP----DFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEALA 133 (213)
T ss_dssp GGGCBCT----TCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHSCC
T ss_pred HHHccCC----CEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHhc
Confidence 9999764 889999999999999999999999999996 4799999999999999876544
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=120.82 Aligned_cols=125 Identities=15% Similarity=0.262 Sum_probs=98.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+..++++.+|.+.|.++++...||++.+ +++|+|+..||+.++........
T Consensus 156 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------~~~Givt~~dl~~~~~~~~~~~~--------------- 211 (280)
T 3kh5_A 156 RDVIVATPGERLKDVARTMVRNGFRRLPVVSEG---------RLVGIITSTDFIKLLGSDWAFNH--------------- 211 (280)
T ss_dssp CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEHHHHHHHHTSHHHHHH---------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEEHHHHHHHHhhhhhhhh---------------
Confidence 567899999999999999999999999999543 89999999999885322111110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+. . ..+. ...+++|+++|+.
T Consensus 212 ----------~~-~---------------------------------------~~~~-------~~~~~~v~~~m~~--- 231 (280)
T 3kh5_A 212 ----------MQ-T---------------------------------------GNVR-------EITNVRMEEIMKR--- 231 (280)
T ss_dssp ----------HH-S---------------------------------------CCTH-------HHHHCBHHHHSBS---
T ss_pred ----------hc-c---------------------------------------cchh-------hhhCCcHHHHhcC---
Confidence 00 0 0000 0135789999975
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|++.|.+++++.+++.+|.+++++++||+|. +|+++|+||+++|++.|+
T Consensus 232 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Givt~~dil~~la 280 (280)
T 3kh5_A 232 -DVITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGIITEKDVLKYFA 280 (280)
T ss_dssp -SCCCBCTTCBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHGGGGC
T ss_pred -CCEEECCCCCHHHHHHHHHHCCCCEEEEECC-CCeEEEEEeHHHHHHhhC
Confidence 4899999999999999999999999999997 469999999999998763
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-14 Score=123.09 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=103.3
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH------HHHHHHH
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL------WVLETAE 116 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~------wvLe~~e 116 (297)
..|+..+- ..+++.+..++++.+|.+.|.++++...||+|.+ ++++|+|+..||+. ++-. .+
T Consensus 125 ~~~v~~~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~--------~~~~Giit~~dl~~~~~~~~~~~~-~~ 192 (282)
T 2yzq_A 125 GVEIEPYY---QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE--------GNLVGIVDETDLLRDSEIVRIMKS-TE 192 (282)
T ss_dssp GCBSTTTS---BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT--------SCEEEEEEGGGGGGCGGGCC-------
T ss_pred cCcHHHHh---CCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC--------CeEEEEEEHHHHhhhhhhhhhhcc-ch
Confidence 45665544 3577899999999999999999999999999865 38999999999983 2110 00
Q ss_pred HHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhh
Q 022403 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (297)
Q Consensus 117 ~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~ 196 (297)
.... + .... +. + ....+++.. .
T Consensus 193 ~~~~----------~-------~~~~--~~---~----------------------------------~~~~~~~~~--~ 214 (282)
T 2yzq_A 193 LAAS----------S-------EEEW--IL---E----------------------------------SHPTLLFEK--F 214 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh----------h-------hhhh--hc---c----------------------------------cchHHHHhH--h
Confidence 0000 0 0000 00 0 000111110 0
Q ss_pred cCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 197 ~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.....+++|+++|.. |++.|.+++++.+++.+|.+++++++||+|. +|+++|+||+++|++.+.+.
T Consensus 215 ~~~~~~~~v~~im~~----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGiit~~Dil~~~~~~ 280 (282)
T 2yzq_A 215 ELQLPNKPVAEIMTR----DVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFDLLKVLVKS 280 (282)
T ss_dssp ----CCCBGGGTCBS----SCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHHHGGGGCC-
T ss_pred hhhhccCCHHHhcCC----CCceeCCCCCHHHHHHHHHHcCcceeEEECC-CCCEEEEEeHHHHHHHHHhh
Confidence 122457899999986 4899999999999999999999999999995 46999999999999988764
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=123.10 Aligned_cols=125 Identities=15% Similarity=0.244 Sum_probs=104.6
Q ss_pred hcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHH
Q 022403 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (297)
Q Consensus 42 a~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e 116 (297)
...+|..+- ..+++.++.++|+.+|++.|.++ ++...||+|.+ ++++|+|+..|++.+
T Consensus 135 ~~~~v~~iM---~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~--------~~lvGivt~~dll~~------ 197 (286)
T 2oux_A 135 EDETAGAIM---TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE--------NHLVGVISLRDLIVN------ 197 (286)
T ss_dssp CTTBHHHHC---BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT--------CBEEEEEEHHHHTTS------
T ss_pred ChHHHHHhC---CCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC--------CeEEEEEEHHHHHcC------
Confidence 344444444 34789999999999999999998 78889999975 389999999998761
Q ss_pred HHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhh
Q 022403 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (297)
Q Consensus 117 ~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~ 196 (297)
T Consensus 198 -------------------------------------------------------------------------------- 197 (286)
T 2oux_A 198 -------------------------------------------------------------------------------- 197 (286)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCc
Q 022403 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD 271 (297)
Q Consensus 197 ~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~d 271 (297)
..+++|+++|... ++.|.+++++.+++.+|.+|+++++||||. +|+++||||..+|++.+.+....|
T Consensus 198 ---~~~~~v~~im~~~----~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~e~~ed 264 (286)
T 2oux_A 198 ---DDDTLIADILNER----VISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDDEAASD 264 (286)
T ss_dssp ---CTTSBHHHHSBSC----CCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHHHC-
T ss_pred ---CCCCcHHHHcCCC----CeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHHHhHHH
Confidence 0246799999764 899999999999999999999999999997 469999999999999998776554
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=131.06 Aligned_cols=130 Identities=14% Similarity=0.164 Sum_probs=109.5
Q ss_pred HhhcCccccCCCCCCCCcEEecCC-CCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHH
Q 022403 40 AFARIPVLSFPNVPGGRVIEIMAD-TTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (297)
Q Consensus 40 ~fa~IPVsSfP~~~~~~VIeI~~d-~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a 118 (297)
-|...+|..+.. .+++.+.++ +|+.||+++|.++++...||+|.+. ++++|||+..||+.+++..
T Consensus 380 ~l~~~~V~diM~---~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-------g~lvGiVt~~Dll~~l~~~---- 445 (527)
T 3pc3_A 380 WWWSLAIAELEL---PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-------GSVLGVVGQETLITQIVSM---- 445 (527)
T ss_dssp TTTTSBGGGGCC---CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-------CCEEEEEEHHHHHHHHHHH----
T ss_pred cccCCcHHHhCc---CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-------CEEEEEEEHHHHHHHHHhc----
Confidence 377888888875 478999999 9999999999999999999999321 3899999999999853321
Q ss_pred HhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcC
Q 022403 119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE 198 (297)
Q Consensus 119 ~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e 198 (297)
.
T Consensus 446 -------------------------------------------------------------------------------~ 446 (527)
T 3pc3_A 446 -------------------------------------------------------------------------------N 446 (527)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC---CCCeeEEeehHHHHHHHhhcc
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG---TPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~---~~~i~niITQSaVI~~L~~~~ 268 (297)
...+++|+++|.+. ++.|.+++++.+++.+|.++++ +||||.+ +|+++||||+.||++.|.+..
T Consensus 447 ~~~~~~V~~im~~~----~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 447 RQQSDPAIKALNKR----VIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp CCTTSBGGGGEETT----CCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred CcCCCcHHHHhcCC----CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 12357899999865 8999999999999999999887 6999974 379999999999999998865
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=118.43 Aligned_cols=125 Identities=16% Similarity=0.219 Sum_probs=101.6
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+.+ . .
T Consensus 201 ~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--------~~l~Giit~~dl~~~-------~-~-------------- 250 (330)
T 2v8q_E 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK--------GRVVDIYSKFDVINL-------A-A-------------- 250 (330)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT--------SBEEEEEEGGGTGGG-------G-G--------------
T ss_pred CCceEECCCCCHHHHHHHHHHcCCCeEEEECCC--------CcEEEEEEHHHHHHH-------H-h--------------
Confidence 578899999999999999999999999999965 489999999999872 0 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc-
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR- 213 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r- 213 (297)
+ . .+ ...+++|+++|...+
T Consensus 251 -------------------------------------~------------~----~~-------~~~~~~v~~~~~~~~~ 270 (330)
T 2v8q_E 251 -------------------------------------E------------K----TY-------NNLDVSVTKALQHRSH 270 (330)
T ss_dssp -------------------------------------S------------S----CC-------CCCSSBHHHHGGGCCS
T ss_pred -------------------------------------c------------c----cc-------ccccCcHHHHHhcccc
Confidence 0 0 00 012467888885211
Q ss_pred -CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 214 -WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 214 -waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
-.|++.|.+++++.+++.+|.+++++++||+|. +|+++|+||+++|++.+.+..|.
T Consensus 271 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~l~Giit~~Dil~~~~~~~~~ 327 (330)
T 2v8q_E 271 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVLTGGE 327 (330)
T ss_dssp CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHSSCC-
T ss_pred ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC-CCcEEEEEeHHHHHHHHHhhccc
Confidence 246899999999999999999999999999997 46999999999999999887764
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=117.34 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=100.9
Q ss_pred hcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHH
Q 022403 42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 116 (297)
Q Consensus 42 a~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e 116 (297)
....+..+-. .+++.+.+++|+.+|++.|.++ ++...||+|.+ ++++|+|+..+++.
T Consensus 133 ~~~~v~~iM~---~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~--------~~lvGivt~~dll~------- 194 (278)
T 2yvy_A 133 EEDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------GRLKGVLSLRDLIV------- 194 (278)
T ss_dssp CTTBGGGTCB---SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT--------CBEEEEEEHHHHHH-------
T ss_pred CcchHHhhcC---CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC--------CCEEEEEEHHHHhc-------
Confidence 3445555553 4789999999999999999997 89999999975 38999999999876
Q ss_pred HHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhh
Q 022403 117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ 196 (297)
Q Consensus 117 ~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~ 196 (297)
..
T Consensus 195 -~~----------------------------------------------------------------------------- 196 (278)
T 2yvy_A 195 -AD----------------------------------------------------------------------------- 196 (278)
T ss_dssp -SC-----------------------------------------------------------------------------
T ss_pred -CC-----------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 197 ~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
.+++|+++|... ++.|.+++++.+++.+|.+|+++.+||||. +|+++||||..+|++.+.+....
T Consensus 197 ----~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~~e~~e 261 (278)
T 2yvy_A 197 ----PRTRVAEIMNPK----VVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEAEATE 261 (278)
T ss_dssp ----TTCBSTTTSBSS----CCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC------
T ss_pred ----CCCcHHHHhCCC----CeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHHHHhHH
Confidence 246789999654 889999999999999999999999999997 46999999999999998776543
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=116.07 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=48.8
Q ss_pred HhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 208 IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 208 I~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+|+.. .+.|.++++|.++..||++.++|++||++ .|+++||||..++++.+++.
T Consensus 194 ~md~s----P~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~~ 247 (250)
T 2d4z_A 194 RIDQS----PFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEGS 247 (250)
T ss_dssp CEECC----SCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC-
T ss_pred cccCC----CeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHHH
Confidence 56766 78999999999999999999999999998 57999999999999999754
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-13 Score=114.22 Aligned_cols=110 Identities=15% Similarity=0.249 Sum_probs=78.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||+..
T Consensus 9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~--------~~~~Giv~~~dl~~~------------------------ 56 (282)
T 2yzq_A 9 QNPVTITLPATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILVN------------------------ 56 (282)
T ss_dssp ESCCCEESSCC------------CCEEEEECTT--------CCEEEEEESSCC---------------------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhh------------------------
Confidence 467889999999999999999999999999964 389999999988751
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ .+++|+++|...
T Consensus 57 ----------~-------------------------------------------------------~~~~v~~~m~~~-- 69 (282)
T 2yzq_A 57 ----------P-------------------------------------------------------DEEQLAMLVKRD-- 69 (282)
T ss_dssp ------------------------------------------------------------------------CCCBSC--
T ss_pred ----------h-------------------------------------------------------ccCCHHHHcCCC--
Confidence 0 135677888653
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH-HHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~-~L~~ 266 (297)
++.+.+++++.+++.+|.+++++++||+|.+ |++.|+||++++++ .+.+
T Consensus 70 --~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~ 119 (282)
T 2yzq_A 70 --VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAK 119 (282)
T ss_dssp --CCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTT
T ss_pred --CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhc
Confidence 7889999999999999999999999999974 69999999999999 7764
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-14 Score=138.48 Aligned_cols=178 Identities=13% Similarity=0.067 Sum_probs=111.1
Q ss_pred HHHHHHhhccCCCCHHHHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHH-HCCCcccceecCCCCCCCccccc
Q 022403 19 YFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILS-ECNILSAPVKIPDAPSSSDWKER 97 (297)
Q Consensus 19 ~~~~~~~~~~~~~~~~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLs-e~nIlsAPV~D~da~~~~~w~dr 97 (297)
-||.+...|++|.-+...- .....++|..+-. |..+++.++.|+|+.|+.++|. ++++.+.||+|++ ++
T Consensus 429 iY~~~~~~k~lp~l~~~~~-~~~~~~~V~diM~-p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~--------~~ 498 (632)
T 3org_A 429 LYETLVLMKHLPYMPILRR-DRSPEMTAREIMH-PIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN--------GY 498 (632)
T ss_dssp HHHHHHHHTTCCEEEEECT-TCCTTSBHHHHCB-CTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT--------CB
T ss_pred HHHHHHHhcCCCccccccc-cccccCcHHHHhh-cCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC--------Ce
Confidence 3555555566553221100 0115677777654 2468899999999999999999 7999999999974 48
Q ss_pred eeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCC
Q 022403 98 YLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGK 177 (297)
Q Consensus 98 yiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~ 177 (297)
++|+|+-.|+...+.+..+....+.+ .... +..
T Consensus 499 lvGiVt~~DL~~~l~~~~~~~~~~~~---------------~~~~--~~~------------------------------ 531 (632)
T 3org_A 499 LLGAISRKEIVDRLQHVLEDVPEPIA---------------GHRT--LVL------------------------------ 531 (632)
T ss_dssp BCCEESHHHHTTTTTTC---------------------------------------------------------------
T ss_pred EEEEEEHHHHHHHHHHHhhhcccccc---------------cccc--eec------------------------------
Confidence 99999999999854322111100000 0000 000
Q ss_pred CCcchhhhhhhhHHHHhhhc-----------------CC-CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCc
Q 022403 178 DAPTAADRLHEDFYKVILQE-----------------EP-FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLR 239 (297)
Q Consensus 178 ~~~~~~~~~~~df~~~L~~~-----------------e~-~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~ 239 (297)
....++.+.+.+. .. -...+|+++|++. .++|++|+++.+++.+|.++++|
T Consensus 532 -------~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~----pitV~~~~~l~ea~~~M~~~~i~ 600 (632)
T 3org_A 532 -------LDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVS----PIVVTSYSLVRQLHFLFVMLMPS 600 (632)
T ss_dssp ----------------------------------------------CCSCCCC----CCEEETTCBHHHHHHHHHHTCCS
T ss_pred -------cCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCC----CceecCCCcHHHHHHHHHhcCCC
Confidence 0000000000000 00 0122588999877 78999999999999999999999
Q ss_pred eeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 240 NVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 240 rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++||+| +|+++||||++||++.+.+
T Consensus 601 ~lpVve--~G~lvGIVT~~Dll~~~~~ 625 (632)
T 3org_A 601 MIYVTE--RGKLVGIVEREDVAYGYSN 625 (632)
T ss_dssp EEEEEE--TTEEEEEEEGGGTEECCCC
T ss_pred EEEEEE--CCEEEEEEehhhHHHHHhh
Confidence 999995 5799999999999876554
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-12 Score=120.39 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=99.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATA 129 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a 129 (297)
.+++.+++++|+.+|.+.+.++ ++...||+|.+ ++++|+|+..|++. +.
T Consensus 163 ~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~--------~~lvGiVt~~Dll~--------~~---------- 216 (473)
T 2zy9_A 163 PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------GRLKGVLSLRDLIV--------AD---------- 216 (473)
T ss_dssp SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT--------SBEEEEEEHHHHHH--------SC----------
T ss_pred CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC--------CcEEEEEEHHHHhc--------CC----------
Confidence 4799999999999999999996 68999999975 38999999999876 10
Q ss_pred cccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHh
Q 022403 130 AGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSII 209 (297)
Q Consensus 130 ~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~ 209 (297)
.+++|+++|
T Consensus 217 -----------------------------------------------------------------------~~~~v~dim 225 (473)
T 2zy9_A 217 -----------------------------------------------------------------------PRTRVAEIM 225 (473)
T ss_dssp -----------------------------------------------------------------------TTSBGGGTS
T ss_pred -----------------------------------------------------------------------CCCcHHHHh
Confidence 246799999
Q ss_pred hhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 210 KSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 210 ~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+.. ++.|.+++++.+++.+|.+|+++.+||||. +|+++|+||..||++.+.+...
T Consensus 226 ~~~----~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~~e~~ 280 (473)
T 2zy9_A 226 NPK----VVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEAEAT 280 (473)
T ss_dssp BSS----CCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHHHHH
T ss_pred CCC----CeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHHHHhh
Confidence 754 899999999999999999999999999997 4699999999999999877543
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=119.27 Aligned_cols=114 Identities=13% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.||.++|.++++.+.||+|... .++++|||+..|+.. .
T Consensus 121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~------~~~lvGiVt~rDl~~--------~---------------- 170 (511)
T 3usb_A 121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD------ERKLVGIITNRDMRF--------I---------------- 170 (511)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTT------TCBEEEEEEHHHHTT--------C----------------
T ss_pred cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCC------CCEEEEEEEehHhhh--------h----------------
Confidence 3568899999999999999999999999999720 048999999888743 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.-.+++|+++|+.
T Consensus 171 ----------------------------------------------------------------~~~~~~V~~vM~~--- 183 (511)
T 3usb_A 171 ----------------------------------------------------------------QDYSIKISDVMTK--- 183 (511)
T ss_dssp ----------------------------------------------------------------CCSSSBHHHHCCC---
T ss_pred ----------------------------------------------------------------ccCCCcHHHhccc---
Confidence 0135789999986
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.|+++|..+.++.+++.+|.+++++++||||. +|+++|+||..++++.+..
T Consensus 184 ~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 184 EQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp CCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhc
Confidence 56899999999999999999999999999997 5799999999999999876
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=113.18 Aligned_cols=112 Identities=12% Similarity=0.265 Sum_probs=97.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceec--CCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKI--PDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D--~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~ 132 (297)
.+++.+++++|+.+|+++|.++++.+.||+| .+ ++++|+|+..|+... .
T Consensus 98 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~--------~~lvGivt~~Dl~~~-------~-------------- 148 (491)
T 1zfj_A 98 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN--------RKLVGIITNRDMRFI-------S-------------- 148 (491)
T ss_dssp SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT--------CBEEEEEEHHHHHHC-------S--------------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC--------CEEEEEEEHHHHhhh-------c--------------
Confidence 4678899999999999999999999999998 43 489999999998651 0
Q ss_pred ccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc
Q 022403 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (297)
Q Consensus 133 g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~ 212 (297)
+ .+++|+++|+.
T Consensus 149 -----------------------------------------------------------------~--~~~~v~~im~~- 160 (491)
T 1zfj_A 149 -----------------------------------------------------------------D--YNAPISEHMTS- 160 (491)
T ss_dssp -----------------------------------------------------------------C--SSSBTTTSCCC-
T ss_pred -----------------------------------------------------------------c--CCCcHHHHcCC-
Confidence 0 24678899975
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.|++.|.+++++.+++.+|.+++++++||||. +|+++|+||+.+|++.+..
T Consensus 161 --~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 161 --EHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp --SCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred --CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence 25889999999999999999999999999997 5799999999999999985
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-11 Score=118.31 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=84.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+++++|+.||.++|.++++.+.||+|.+ ++++|||+..|+.. .
T Consensus 97 ~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~--------~~lvGiVt~rDL~~--------~---------------- 144 (496)
T 4fxs_A 97 THPVTVRPEQTIADVMELTHYHGFAGFPVVTEN--------NELVGIITGRDVRF--------V---------------- 144 (496)
T ss_dssp BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS--------SBEEEEEEHHHHTT--------C----------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEccC--------CEEEEEEEHHHHhh--------c----------------
Confidence 466889999999999999999999999999975 49999999998752 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.-.+++|+++|+. .
T Consensus 145 ----------------------------------------------------------------~~~~~~v~diM~p--~ 158 (496)
T 4fxs_A 145 ----------------------------------------------------------------TDLTKSVAAVMTP--K 158 (496)
T ss_dssp ----------------------------------------------------------------CCTTSBGGGTSEE--G
T ss_pred ----------------------------------------------------------------ccCCCcHHHHhcC--C
Confidence 0135779999973 1
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+|++.+..+.++.+++.+|.+|+++.+||||. +|+++|+||..+|++...
T Consensus 159 ~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 159 ERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAES 208 (496)
T ss_dssp GGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CC
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhc
Confidence 35789999999999999999999999999997 579999999999998754
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-12 Score=119.59 Aligned_cols=114 Identities=17% Similarity=0.306 Sum_probs=6.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.||+++|.++++.+.||+|.+ ++++|+|+..||.. ..
T Consensus 103 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~lvGivt~~Dl~~--------~~--------------- 151 (494)
T 1vrd_A 103 YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE--------GRLVGLLTNRDVRF--------EK--------------- 151 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC--------CEEEEEEEHHHHHh--------hc---------------
Confidence 478899999999999999999999999999975 38999999998864 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ .+++|+++|+. .
T Consensus 152 ---------------------------------------------------------------~--~~~~v~~im~~--~ 164 (494)
T 1vrd_A 152 ---------------------------------------------------------------N--LSKKIKDLMTP--R 164 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------C--CCCcHHHHhCC--C
Confidence 0 23568899986 1
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+++.|.+++++.+++.+|.+++++++||||. +|+++|+||+.++++.+...
T Consensus 165 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 165 EKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp ---------------------------------------------CHHHHTCT
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhccc
Confidence 24899999999999999999999999999997 57999999999999998754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-11 Score=117.02 Aligned_cols=111 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.||.++|.++++...||+| + ++++|||+..|+... .
T Consensus 96 ~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~--------g~lvGIVt~rDl~~~-------~---------------- 143 (490)
T 4avf_A 96 RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q--------GELVGIVTGRDLRVK-------P---------------- 143 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C--------CEEEEEEEhHHhhhc-------c----------------
Confidence 3568999999999999999999999999999 3 389999999887431 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
-.+++|+++|+. .
T Consensus 144 -----------------------------------------------------------------~~~~~V~~vMtp--~ 156 (490)
T 4avf_A 144 -----------------------------------------------------------------NAGDTVAAIMTP--K 156 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------ccCCcHHHHhcc--C
Confidence 024678999973 1
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.|++++..+.++.+++.+|.+++++.+||||. +|+++|+||..++++...
T Consensus 157 ~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 157 DKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ---------------------------------------------------
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhcc
Confidence 24799999999999999999999999999997 579999999999999764
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-11 Score=116.52 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=0.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.||.++|.++++...||+|.+.. .++++|||+..||... ..
T Consensus 106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~-----~g~lvGiVt~~Dl~~~-------~~---------------- 157 (503)
T 1me8_A 106 SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP-----HGVLLGLVTQRDYPID-------LT---------------- 157 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc-----CCeEEEEEEHHHHHhh-------hc----------------
Confidence 6789999999999999999999999999987410 1389999999998652 00
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+++|+++|+.. .
T Consensus 158 ----------------------------------------------------------------~~~~~V~diM~~~--~ 171 (503)
T 1me8_A 158 ----------------------------------------------------------------QTETKVSDMMTPF--S 171 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------cccCcHHHHhCCC--C
Confidence 0246799999742 2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
+++.|.++.++.+++.+|.+++++++||||. +|+++||||..||++.+....
T Consensus 172 ~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~~~ 223 (503)
T 1me8_A 172 KLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQVCHN 223 (503)
T ss_dssp ---------------------------------------------------CC
T ss_pred CCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhhccc
Confidence 3688999999999999999999999999997 479999999999999887544
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-10 Score=115.74 Aligned_cols=110 Identities=15% Similarity=0.321 Sum_probs=0.0
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a 136 (297)
.|+|.+|.||.||.+++.+++|.+.||+|...+ .+|++|||+-.|+-. .
T Consensus 148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~-----~~kLvGIvT~RD~rf--------~------------------ 196 (556)
T 4af0_A 148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGEP-----DSKLLGIVTGRDVQF--------Q------------------ 196 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEcCCCCCHHHHHHHHHHhCCCccccccccCc-----CCEEEEEEecccccc--------c------------------
Confidence 578999999999999999999999999987422 258999998877522 0
Q ss_pred ccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCC
Q 022403 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (297)
Q Consensus 137 ~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaP 216 (297)
+ .+++|+++|++.
T Consensus 197 -------------------------------------------------------------d--~~~~V~evMT~~---- 209 (556)
T 4af0_A 197 -------------------------------------------------------------D--AETPIKSVMTTE---- 209 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------c--cceEhhhhcccc----
Confidence 0 257899999975
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++++..+.++.++..+|.+||+..+||||. +++++|+||..|+++.-.
T Consensus 210 lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 210 VVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQN 257 (556)
T ss_dssp -------------------------------------------------
T ss_pred eEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhh
Confidence 999999999999999999999999999998 579999999999987553
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-11 Score=115.77 Aligned_cols=118 Identities=12% Similarity=0.190 Sum_probs=64.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.||.++|.++++.+.||+|.+.. .+|++|+|+..|+.. ..
T Consensus 116 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----~~~lvGiVt~~Dl~~--------~~--------------- 167 (514)
T 1jcn_A 116 TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTM-----GSKLVGIVTSRDIDF--------LA--------------- 167 (514)
T ss_dssp SSCCCCCC-----------------CEESCC-------------CCEECTTTTC--------------------------
T ss_pred cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCc-----CCEEEEEEEHHHHHh--------hh---------------
Confidence 46788999999999999999999999999997310 038999998888754 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+...+++|+++|.. .
T Consensus 168 ---------------------------------------------------------------~~~~~~~v~~vm~~--~ 182 (514)
T 1jcn_A 168 ---------------------------------------------------------------EKDHTTLLSEVMTP--R 182 (514)
T ss_dssp ----------------------------------------------------------------------------C--C
T ss_pred ---------------------------------------------------------------hccCCCCHHHHhCC--C
Confidence 00134678999985 2
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.++++|.+++++.+++.+|.+++++++||||. +|+++|+||++++++.+..
T Consensus 183 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~ 233 (514)
T 1jcn_A 183 IELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRDY 233 (514)
T ss_dssp BCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCCC
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhhC
Confidence 35899999999999999999999999999996 5799999999999987754
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.4e-10 Score=107.55 Aligned_cols=107 Identities=20% Similarity=0.318 Sum_probs=0.6
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.++.++|.++++...||+|.+ +++|+|+..|+.. .
T Consensus 101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~---------~lvGivt~~Dl~~--------~---------------- 147 (486)
T 2cu0_A 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVEDE---------KVVGIITKKDIAA--------R---------------- 147 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEECC---------EEEEEEEHHHhcc--------C----------------
Confidence 578899999999999999999999999999863 8999998888653 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.+.+|+++|..
T Consensus 148 ------------------------------------------------------------------~~~~v~~im~~--- 158 (486)
T 2cu0_A 148 ------------------------------------------------------------------EGKLVKELMTK--- 158 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------CCCCHHHHccC---
Confidence 12458888875
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|++.|.+++++.+++.+|.+++++.+||||. +|+++|+||..+|++.+.
T Consensus 159 -~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 159 -EVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKK 207 (486)
T ss_dssp --------------------------------------------------C
T ss_pred -CCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhh
Confidence 4789999999999999999999999999997 469999999999999876
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.4e-09 Score=76.17 Aligned_cols=45 Identities=31% Similarity=0.311 Sum_probs=42.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
|+|.+.+|+|+.||+++|.+|||.+.||.|.+ +++|||+..||+.
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~---------~lvGIvT~~Di~~ 45 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGD---------EILGVVTERDILD 45 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETT---------EEEEEEEHHHHHH
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEEHHHHHH
Confidence 57999999999999999999999999999865 8999999999987
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-09 Score=86.01 Aligned_cols=60 Identities=20% Similarity=0.360 Sum_probs=54.7
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+.+|+|||++. +++|.+++|+.+++.+|.+++++++||+|. +|+++|+||..++++.+.
T Consensus 16 ~~~~V~diM~~~----v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~ 75 (170)
T 4esy_A 16 RQVPIRDILTSP----VVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSI 75 (170)
T ss_dssp HTSBGGGGCCSC----CCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTC
T ss_pred cCCCHHHhcCCC----CcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHh
Confidence 578999999875 999999999999999999999999999997 579999999999987654
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=78.70 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=59.9
Q ss_pred hhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 194 L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+.+--.+.+.+|++||.. +.+++.+.+++|+.+++.+|.+++.+++||+|.+.++++|+||..++++.+.+.
T Consensus 14 i~~~~~l~~~~v~diM~~--~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~ 85 (148)
T 3lv9_A 14 VDNIFEFEEKKIREIMVP--RTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE 85 (148)
T ss_dssp ----CGGGTCBGGGTSEE--TTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHcccc--HHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 333355788999999976 234899999999999999999999999999997547999999999999988654
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=78.59 Aligned_cols=81 Identities=17% Similarity=0.401 Sum_probs=66.0
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhccc
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K 279 (297)
+.+.+|+++|... .++++|.+++|+.+++.+|.+++++++||+|. +|+++|+||..++++.+....+.+ ++.+...
T Consensus 12 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~~ 87 (150)
T 3lqn_A 12 FQQIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLERIE-FERLEEM 87 (150)
T ss_dssp HHHCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSSSBC-GGGGGGC
T ss_pred hhcCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhcccc-hhHHhcC
Confidence 4678999999842 23899999999999999999999999999997 469999999999999997655432 2344566
Q ss_pred ccccc
Q 022403 280 PISDL 284 (297)
Q Consensus 280 ~lsel 284 (297)
+++++
T Consensus 88 ~v~~~ 92 (150)
T 3lqn_A 88 KVEQV 92 (150)
T ss_dssp BGGGT
T ss_pred CHHHH
Confidence 67665
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.7e-08 Score=71.30 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=43.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+.|++++|+.+++.+|.+|+++.+||+| +|+++||||..|+++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence 47899999999999999999999999999 4699999999999976543
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.3e-08 Score=78.90 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=63.5
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhccccc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~l 281 (297)
..+++++|... ..+..|.+++|+.+|+.+|.+++.+++||+|. +++++|+||..++++.+...... .+.+...++
T Consensus 14 ~~~~~~iM~P~--~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~--~~~~~~~~v 88 (156)
T 3k6e_A 14 LGQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLS--QEIMADTDI 88 (156)
T ss_dssp HTTGGGGEEET--TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCC--HHHHTTSBG
T ss_pred hccHHHhCcch--hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccc--cccccccCH
Confidence 46799999742 34889999999999999999999999999996 47999999999999988776544 445556666
Q ss_pred ccc
Q 022403 282 SDL 284 (297)
Q Consensus 282 sel 284 (297)
+++
T Consensus 89 ~~i 91 (156)
T 3k6e_A 89 VHM 91 (156)
T ss_dssp GGT
T ss_pred HHh
Confidence 664
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.1e-08 Score=78.42 Aligned_cols=82 Identities=15% Similarity=0.300 Sum_probs=64.1
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhcc
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~ 278 (297)
.+.+.+|+++|.. +.++++|.+++++.+++.+|.+++++++||+|. +|+++|+||..++++.+....+. .++.+..
T Consensus 10 ~l~~~~v~~im~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~-~~~~~~~ 85 (159)
T 1yav_A 10 QLLEATVGQFMIE--ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERI-EFEKLDQ 85 (159)
T ss_dssp -CTTCBHHHHSEE--GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSB-CGGGTTT
T ss_pred HHhHhhHHHHhCC--ccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhccc-chhhhcc
Confidence 4567999999976 123899999999999999999999999999997 46999999999999988764322 2333445
Q ss_pred cccccc
Q 022403 279 QPISDL 284 (297)
Q Consensus 279 K~lsel 284 (297)
++++++
T Consensus 86 ~~v~~~ 91 (159)
T 1yav_A 86 ITVEEV 91 (159)
T ss_dssp SBHHHH
T ss_pred CCHHHh
Confidence 555553
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=75.44 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=60.1
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
......+|++||... -.+++.|.+++++.+++.+|.+++++.+||+|. +|+++|+||..++++.+....
T Consensus 19 ~~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~ 87 (165)
T 3fhm_A 19 FQGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQG 87 (165)
T ss_dssp CSSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHG
T ss_pred HhhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcC
Confidence 557789999999862 124789999999999999999999999999996 469999999999999987653
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=72.05 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=54.9
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++|+++|... ++++.+++++.+++.+|.+++.+.+||+|. +|++.|+||..++++.+.+.
T Consensus 1 ~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~ 60 (122)
T 3kpb_A 1 TLVKDILSKP----PITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQN 60 (122)
T ss_dssp CBHHHHCCSC----CCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTT
T ss_pred CchHHhhCCC----CEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhc
Confidence 5799999875 899999999999999999999999999996 46999999999999988764
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.5e-08 Score=75.76 Aligned_cols=83 Identities=14% Similarity=0.334 Sum_probs=62.6
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~ 277 (297)
+.+.+.+|+++|.. +.+++++.++.|+.+++.+|.+++++++||+|. +|+++|+||..++++.+......+ ++.+.
T Consensus 6 ~~l~~~~v~~im~~--~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~-~~~~~ 81 (157)
T 2emq_A 6 NEFMQMTVKPFLIP--ADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGLERIE-FERLE 81 (157)
T ss_dssp ----CCBSTTTCEE--GGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCSSSBC-GGGGG
T ss_pred hhHhhCcHHhhccC--CccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhcccccc-hHHhc
Confidence 44678999999975 124889999999999999999999999999997 469999999999999887532211 12344
Q ss_pred ccccccc
Q 022403 278 SQPISDL 284 (297)
Q Consensus 278 ~K~lsel 284 (297)
..+++++
T Consensus 82 ~~~v~~~ 88 (157)
T 2emq_A 82 TMKVEEV 88 (157)
T ss_dssp TCBGGGT
T ss_pred CCcHHHH
Confidence 5566664
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9e-08 Score=77.34 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=59.4
Q ss_pred CCCCccchhhHhhhccCCCceEe--cCCCCHHHHHHHHhhcCCceeEEEc-CCCCCeeEEeehHHHHHHHhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPIIE-PGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV--~~~~sll~vllLLsK~rl~rvPVVd-~~~~~i~niITQSaVI~~L~~~ 267 (297)
+...+.+|++||......|+++| .+++++.+++.+|.+++++++||+| .++|+++|+||..++++.+...
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~ 78 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENA 78 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 34578999999987766678888 9999999999999999999999994 2367999999999999998764
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.8e-08 Score=82.20 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=56.9
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.+++|++||... ++.+.+++++.+++.+|.+++++++||+|. +|+++||||..++++.+....
T Consensus 5 ~~~~v~~im~~~----~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~ 67 (245)
T 3l2b_A 5 VKLKVEDLEMDK----IAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIW 67 (245)
T ss_dssp CCCBGGGSCCBC----CCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCC
T ss_pred ccCcHHHhcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhh
Confidence 368999999765 899999999999999999999999999997 479999999999999987654
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=74.31 Aligned_cols=64 Identities=14% Similarity=0.273 Sum_probs=56.9
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcC-CCCCeeEEeehHHHHHHHhhc
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~-~~~~i~niITQSaVI~~L~~~ 267 (297)
..+.+|+++|... ++.+.+++|+.+++.+|.+++++.+||+|. ++++++|+||..++++.+...
T Consensus 10 ~~~~~v~dim~~~----~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~ 74 (164)
T 2pfi_A 10 SHHVRVEHFMNHS----ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAE 74 (164)
T ss_dssp CCSCBHHHHCBCC----CCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-
T ss_pred ccCCCHHHHcCCC----CeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhh
Confidence 4578999999874 889999999999999999999999999996 357999999999999988653
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=71.93 Aligned_cols=61 Identities=13% Similarity=0.279 Sum_probs=55.4
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+.+|+++|... ++++.+++++.+++.+|.+++.+.+||+| +|+++|+||..++++.+.+.
T Consensus 2 ~~~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~ 62 (133)
T 2ef7_A 2 EEEIVKEYMKTQ----VISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKG 62 (133)
T ss_dssp CCCBGGGTSBCS----CCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTT
T ss_pred CcccHHHhccCC----CEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcC
Confidence 467899999874 89999999999999999999999999999 56999999999999988764
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-08 Score=74.39 Aligned_cols=66 Identities=6% Similarity=0.061 Sum_probs=55.2
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+.+.+|++||... .+++.+.+++|+.+++.+|.+++.+++||+|.+.++++|+||..++++.+.+.
T Consensus 3 l~~~~v~~iM~~~--~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~ 68 (130)
T 3i8n_A 3 AQDVPVTQVMTPR--PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG 68 (130)
T ss_dssp ----CCTTTSCCB--CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT
T ss_pred cCcCCHhhCCCcH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC
Confidence 4678899999743 34778999999999999999999999999997547999999999999988764
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=72.50 Aligned_cols=63 Identities=11% Similarity=0.360 Sum_probs=56.0
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHH-HHHHhh
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV-VQGLEG 266 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaV-I~~L~~ 266 (297)
.+.+.+|+++|... ++++.+++++.+++.+|.+++.+.+||+|.+ ++++|+||..++ ++.+.+
T Consensus 4 ~l~~~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~ 67 (138)
T 2p9m_A 4 TLKNIKVKDVMTKN----VITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRD 67 (138)
T ss_dssp -CTTCBGGGTSBCS----CCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTT
T ss_pred ccccCCHHHhhcCC----ceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhh
Confidence 35688999999764 8999999999999999999999999999974 699999999999 887764
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=73.06 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=55.5
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+.+|++||... .+++.+.+++|+.+++.+|.+++.+++||+|.++++++|+||..++++.+.+.
T Consensus 1 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~ 64 (130)
T 3hf7_A 1 KVSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK 64 (130)
T ss_dssp CCBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS
T ss_pred CcCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc
Confidence 35799999632 23789999999999999999999999999986567999999999999998764
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-08 Score=74.37 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+.+.+|++||... .+++.+.++.|+.+++.+|.+++.+++||+|.+.++++|+||..++++.+.
T Consensus 2 ~~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 2 NAERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp --CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT
T ss_pred CCCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc
Confidence 3578899999832 237899999999999999999999999999975479999999999998775
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=73.56 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=54.7
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+.+|++||... .+++.+.+++|+.+++.+|.+++.+++||+|.+.++++|+||..++++.+...
T Consensus 2 ~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~ 65 (127)
T 3nqr_A 2 DQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD 65 (127)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTT
T ss_pred CcCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcc
Confidence 46899999742 23789999999999999999999999999997547999999999999887643
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=72.66 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=54.5
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCC--CeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP--DIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~--~i~niITQSaVI~~L~~~ 267 (297)
+.+|+++|... ++++.+++|+.+++.+|.+++.+++||+|. ++ +++|+||..++++.+.+.
T Consensus 4 ~~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~ 66 (141)
T 2rih_A 4 AIRTSELLKRP----PVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQR 66 (141)
T ss_dssp -CBGGGGCCSC----CEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTT
T ss_pred ceEHHHHhcCC----CeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcC
Confidence 47899999864 899999999999999999999999999996 45 899999999999988653
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-07 Score=75.30 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=56.7
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.+.+|++||... +++|.+++|+.+++.+|.+++++++||+|. +|+++|+||..++++.+....
T Consensus 3 ~~~~v~dim~~~----~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~ 65 (160)
T 2o16_A 3 LMIKVEDMMTRH----PHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSL 65 (160)
T ss_dssp CCCBGGGTSEES----CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHC
T ss_pred CcCcHHHHhcCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhh
Confidence 467899999864 899999999999999999999999999996 469999999999999987654
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.9e-07 Score=70.46 Aligned_cols=60 Identities=10% Similarity=0.256 Sum_probs=52.0
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++|++||.. ++.+++++.+++++.+++.+|.+++.+.+||+| +|+++|+||..++++.+.
T Consensus 6 ~~v~~im~~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~ 65 (135)
T 2rc3_A 6 KTVKHLLQE-KGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSY 65 (135)
T ss_dssp CBHHHHHHH-HCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGG
T ss_pred eeHHHHHhc-CCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHH
Confidence 489999982 123489999999999999999999999999999 569999999999997544
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-07 Score=84.24 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC-CCCeeEEeehHHHHHHHhhc
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~-~~~i~niITQSaVI~~L~~~ 267 (297)
...+.+|+|||.+. +++|.+++++.++..+|.+++++.+||||.+ +++++||||++++++.|...
T Consensus 9 ~~~~~~v~diMt~~----vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~ 74 (250)
T 2d4z_A 9 NKYNIQVGDIMVRD----VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR 74 (250)
T ss_dssp CCSSCBTTSSSBSS----CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred ccCCCChHHhcCCC----CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHh
Confidence 35678999999876 9999999999999999999999999999975 36899999999999988755
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=74.38 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=54.5
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+.+|++||... .+++.+.++.|+.+++.+|.+++.+++||+|.+.++++|+||..++++.+.+
T Consensus 2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~ 64 (136)
T 3lfr_A 2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK 64 (136)
T ss_dssp -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS
T ss_pred CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh
Confidence 46899999732 3389999999999999999999999999999754799999999999988763
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=72.07 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=55.3
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+.+|+++|... +.++.+++++.+++.+|.+++.+.+||+|. +++.|+||..++++.+.+.
T Consensus 3 ~s~~v~~~m~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~ 63 (128)
T 3gby_A 3 ASVTFSYLAETD----YPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGW 63 (128)
T ss_dssp TTCBGGGGCBCC----SCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSS
T ss_pred cceEHHHhhcCC----cceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhC
Confidence 467899999887 899999999999999999999999999996 6999999999999876543
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=73.56 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=55.8
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.++|+++|.. +.+++.+.+++|+.+++.+|.+++++.+||+|.+ |+++|+||..++++.+.+.
T Consensus 27 ~~~v~dim~~--~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~ 89 (149)
T 3k2v_A 27 LLRVNDIMHT--GDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTG 89 (149)
T ss_dssp TSBGGGTSBC--GGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSS
T ss_pred ccCHHHHhcC--CCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcC
Confidence 4689999976 2238999999999999999999999999999974 6999999999999988763
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.3e-08 Score=76.30 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEE-cCCCCCeeEEeehHHHHHHHhhc
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVV-d~~~~~i~niITQSaVI~~L~~~ 267 (297)
+.+.+|++||... .+++.+.++.|+.+++.+|.+++.+++||+ |.++++++|+||..++++.+...
T Consensus 17 l~~~~v~~iM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~ 83 (153)
T 3oco_A 17 MNDKVASDVMVDR--TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID 83 (153)
T ss_dssp HHHCBHHHHSEEG--GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH
T ss_pred cCCCEeeeEecch--hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC
Confidence 4678999999741 237899999999999999999999999999 65457999999999999988754
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-07 Score=76.15 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=54.9
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+--.+.+.+|++||... .+++++.+++|+.+++.+|.+++.+++||+|.+.++++|+||..++++.+.+.
T Consensus 35 ~~~~l~~~~v~diM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~ 104 (172)
T 3lhh_A 35 NVFRLDERTISSLMVPR--SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG 104 (172)
T ss_dssp --------CTTTTSEEG--GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT
T ss_pred HHhccCCCCHHHhCccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc
Confidence 33457889999999832 23889999999999999999999999999997537999999999999988754
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=71.08 Aligned_cols=62 Identities=11% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH-HHh
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLE 265 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~-~L~ 265 (297)
.+.+.+|+++|.+. ++++.+++++.+++.+|.+++.+.+||+|. +|+++|+||..++++ .+.
T Consensus 3 ~l~~~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~ 65 (138)
T 2yzi_A 3 MDMKAPIKVYMTKK----LLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIV 65 (138)
T ss_dssp CCTTSBGGGTCBCC----CCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTT
T ss_pred chhhhhHHHHhcCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHh
Confidence 35678999999854 899999999999999999999999999996 469999999999984 443
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-07 Score=69.98 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=52.9
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+|+++|... ++++.+++++.+++.+|.+++.+.+||+| +|+++|+||..++++.+.+.
T Consensus 2 ~v~~~m~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~ 59 (125)
T 1pbj_A 2 RVEDVMVTD----VDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEG 59 (125)
T ss_dssp CHHHHCBCS----CCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHT
T ss_pred CHHHhcCCC----ceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcC
Confidence 688999764 89999999999999999999999999999 57999999999999988764
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5e-07 Score=72.48 Aligned_cols=61 Identities=8% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+...+|+++|.. |+ +|.+++++.+++.+|.+++.+.+||+|.+ |+++|+||..++++.+..
T Consensus 14 l~~~~v~~im~~----~~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~ 74 (159)
T 3fv6_A 14 LKKLQVKDFQSI----PV-VIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIG 74 (159)
T ss_dssp HTTCBGGGSCBC----CC-EEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTS
T ss_pred HhhCCHHHHcCC----CE-EECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhc
Confidence 367899999973 45 99999999999999999999999999974 699999999999998744
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=71.12 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=55.6
Q ss_pred CCCccchhh---HhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 199 PFKSTTVRS---IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 199 ~~k~tkV~d---I~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+.+.+|++ +|. .+++++.+++++.+++.+|.+++.+++||+|.+ ++++|+||..++++.+.+.
T Consensus 4 ~~~~~~v~~~~~~~~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~ 70 (144)
T 2nyc_A 4 HFLKIPIGDLNIITQ----DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGG 70 (144)
T ss_dssp GGGGSBGGGSSCCBC----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC
T ss_pred chhhcchhhcCCCCC----CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccc
Confidence 355778888 554 458999999999999999999999999999974 6999999999999988764
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=72.53 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=54.4
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+..+|+++|... .++++|.+++++.+++.+|.+++.+.+||+|.+ ++++|+||..++++.+....+
T Consensus 3 ~~~~v~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~ 68 (152)
T 4gqw_A 3 GVYTVGEFMTKK--EDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDST 68 (152)
T ss_dssp CCSBGGGTSEES--TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----C
T ss_pred ceEEhhhccCCC--CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCc
Confidence 467899999762 348999999999999999999999999999974 699999999999876654433
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-07 Score=72.00 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=53.0
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH-HHHhh
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEG 266 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI-~~L~~ 266 (297)
+.++..+|+++|... ++++.+++++.+++.+|.+++.+++||+|. ++++.|+||..+++ +.+.+
T Consensus 3 d~~~~~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~ 67 (133)
T 1y5h_A 3 DPFTMTTARDIMNAG----VTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAA 67 (133)
T ss_dssp -----CCHHHHSEET----CCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGG
T ss_pred ChhhhcCHHHHhcCC----ceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhc
Confidence 345678999999864 889999999999999999999999999986 46999999999999 46654
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-07 Score=71.51 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=56.0
Q ss_pred ccchhhHhhhcc--CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 202 STTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 202 ~tkV~dI~~s~r--waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.++|++||.... ..+++.|.+++|+.+++.+|.+++.+.+||+| +++++|+||..++++.+....
T Consensus 6 ~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~ 72 (157)
T 4fry_A 6 STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQE 72 (157)
T ss_dssp -CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGT
T ss_pred HHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhcc
Confidence 368999998641 25689999999999999999999999999977 579999999999999887654
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-07 Score=72.13 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=57.1
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCce-eEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN-VPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~r-vPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
..|...+|+++|... +++|.+++|+.+++.+|.+++.++ +||+|.+ +++|+||..++++.+.
T Consensus 11 ~~~~~~~v~~im~~~----~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~ 73 (157)
T 1o50_A 11 HHMKVKDVCKLISLK----PTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSG 73 (157)
T ss_dssp TTCBHHHHTTSSCCC----CEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHH
T ss_pred hhhccccHhhcccCC----CceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHh
Confidence 568889999999875 999999999999999999999999 9999964 9999999999999875
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-07 Score=75.84 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+.+.+|++||+.. .+++.+.+++++.+++.+|.+++.+++||+|.++++++||||..++++.+.+
T Consensus 34 ~l~~~~v~diM~~~--~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~ 99 (156)
T 3oi8_A 34 DFSDLEVRDAMITR--SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN 99 (156)
T ss_dssp HHTTCBGGGTCEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC
T ss_pred ccCCCCHhheeeeH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc
Confidence 46789999999752 3488999999999999999999999999999754699999999999987654
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=72.15 Aligned_cols=61 Identities=10% Similarity=0.210 Sum_probs=54.9
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
..+|+++|.+. ++++.+++|+.+++.+|.+++.+++||+|.+ |+++|+||..++++.+...
T Consensus 8 ~~~v~~im~~~----~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~ 68 (184)
T 1pvm_A 8 FMRVEKIMNSN----FKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPR 68 (184)
T ss_dssp CCBGGGTSBTT----CCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGG
T ss_pred ccCHHHhcCCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhc
Confidence 47899999864 8999999999999999999999999999864 6999999999999987753
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.6e-07 Score=74.38 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=58.4
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
-.|...+|++||+. ..+++.|.+++|+.+++.+|.+++.+++||+|.+.++++||||..++++.+.+.
T Consensus 31 l~l~~~~v~diM~~--~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~ 98 (173)
T 3ocm_A 31 LTLAERSIRSIMTP--RTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE 98 (173)
T ss_dssp HHHTTSCSTTTSEE--GGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH
T ss_pred hccCCCCHHHhCCc--HHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC
Confidence 34678899999963 123788999999999999999999999999997557999999999999988653
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=85.46 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=58.1
Q ss_pred CCCccchhhHhhhccCCCceEecCC-CCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATD-DSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~-~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.|.+.+|++||.+. +++|.++ +|+.+++.+|.+++++++||+|.++++++||||..++++.+...
T Consensus 380 ~l~~~~V~diM~~~----~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 380 WWWSLAIAELELPA----PPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp TTTTSBGGGGCCCC----CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH
T ss_pred cccCCcHHHhCcCC----CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc
Confidence 46679999999865 8999999 99999999999999999999994457999999999999988763
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-07 Score=70.70 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=51.3
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.+|++||... .++++|.+++|+.+++.+|.+++++++||+|. +++++|+||..++++.
T Consensus 4 ~~v~dim~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~ 61 (180)
T 3sl7_A 4 YTVGDFMTPR--QNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLAL 61 (180)
T ss_dssp CBHHHHSEEG--GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC
T ss_pred eeHHHhcCCC--CCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhh
Confidence 5799999761 23899999999999999999999999999997 4699999999999864
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.9e-06 Score=83.78 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=56.2
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHh-hcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLS-KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLs-K~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+.+|+|+|+.. .++.++++++|+.+++.+|. +++.+++||||. +++++|+||+.|+++.+.+.
T Consensus 451 ~~~~V~diM~p~--~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~ 515 (632)
T 3org_A 451 PEMTAREIMHPI--EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHV 515 (632)
T ss_dssp TTSBHHHHCBCT--TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC
T ss_pred ccCcHHHHhhcC--CCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHH
Confidence 678999999821 23888999999999999999 799999999997 57999999999999987654
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=67.24 Aligned_cols=60 Identities=8% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
.-..+++++|... +++|.++.|+.+++.+|.+++.+.+||+|. +++++|+||..++.+.+
T Consensus 10 ~~~~~~~~~~~~~----~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~ 69 (213)
T 1vr9_A 10 HHHMKVKKWVTQD----FPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLD 69 (213)
T ss_dssp ---CBGGGGCBSC----SCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSC
T ss_pred ccccCHHHhhcCC----CeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhc
Confidence 3456678888776 899999999999999999999999999996 46999999999997654
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=3.9e-05 Score=68.68 Aligned_cols=61 Identities=11% Similarity=0.293 Sum_probs=55.0
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhc-----CCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~-----rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
-.|...+|++||... |++|.++.|+.+++.+|.+| +++++||||. +++++|+||..+++..
T Consensus 132 l~~~~~~v~~iM~~~----~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~ 197 (286)
T 2oux_A 132 LHYEDETAGAIMTTE----FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN 197 (286)
T ss_dssp TTSCTTBHHHHCBSC----CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS
T ss_pred hcCChHHHHHhCCCC----ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcC
Confidence 367889999999875 99999999999999999998 8899999997 4799999999998763
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.2e-05 Score=64.89 Aligned_cols=60 Identities=5% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhc---CCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY---RLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~---rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
-.|...+|++||+.. |+.|.++.|+.+++.+|.++ +++.+||+|. +++++|+||..+++.
T Consensus 49 l~~~~~~v~~iM~~~----~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~ 111 (205)
T 3kxr_A 49 DQYSENEIGRYTDHQ----MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFK 111 (205)
T ss_dssp HHSCTTCGGGGCBCC----CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTT
T ss_pred hCCCcchHHhhccCc----eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHh
Confidence 357788999999886 99999999999999999997 8999999997 569999999999864
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=64.77 Aligned_cols=60 Identities=8% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhc-----CCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~-----rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.|...+|++||+.. |+.|.++.|+.+++.+|.++ ++.++||+|.+ ++++|+||..+++..
T Consensus 131 ~~~~~~v~~iM~~~----~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~ 195 (278)
T 2yvy_A 131 RYEEDEAGGLMTPE----YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA 195 (278)
T ss_dssp HSCTTBGGGTCBSC----CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHS
T ss_pred CCCcchHHhhcCCC----ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcC
Confidence 36678999999875 99999999999999999998 79999999974 799999999999863
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0007 Score=66.31 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=45.1
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
+++++|... ++.+.+++|+.+++.+|.+++..++||+|. +++++||||..++.
T Consensus 90 ~~~~~m~~d----~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~ 142 (496)
T 4fxs_A 90 IFEAGVVTH----PVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVR 142 (496)
T ss_dssp HCCC--CBC----CCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHT
T ss_pred ccccccccC----ceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHh
Confidence 345666644 789999999999999999999999999997 47999999999985
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00084 Score=64.89 Aligned_cols=62 Identities=8% Similarity=0.216 Sum_probs=54.6
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhc-----CCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~-----rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+--.|...+|+++|... ++.+.++.|+.+++.+|.++ ++.++||+|.+ ++++|+||..+++.
T Consensus 148 ~~l~~~~~~v~~iM~~~----~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~ 214 (473)
T 2zy9_A 148 ALARYEEDEAGGLMTPE----YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIV 214 (473)
T ss_dssp HHHTSCTTBSTTTCBSC----EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHH
T ss_pred HHhcCCCCCHHHhCCCC----ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhc
Confidence 33457788999999875 99999999999999999987 58999999974 79999999999986
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=62.85 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=47.4
Q ss_pred hhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcC-CCCCeeEEeehHHHHH
Q 022403 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ 262 (297)
Q Consensus 205 V~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~-~~~~i~niITQSaVI~ 262 (297)
++++|... ++.+.+++++.+++.+|.+++.+++||+|. ++++++|+||..+++.
T Consensus 92 ~~~im~~~----~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~ 146 (491)
T 1zfj_A 92 SENGVIID----PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF 146 (491)
T ss_dssp HTTTTSSS----CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred HHhcCcCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence 46777754 888999999999999999999999999993 3579999999999985
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00037 Score=68.00 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
+++.++.++++.+|.++|.++++..+||+|.+ ++++|||+..||+..+.
T Consensus 172 ~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~--------g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 172 KLVTAHQDTKLSEANKIIWEKKLNALPIIDDD--------QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ---------------------------------------------------------
T ss_pred CCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEecHHHHhhh
Confidence 38899999999999999999999999999976 48999999999998543
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0023 Score=62.95 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=47.4
Q ss_pred chhhHhhhcc--CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC-CCCeeEEeehHHHHH
Q 022403 204 TVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQ 262 (297)
Q Consensus 204 kV~dI~~s~r--waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~-~~~i~niITQSaVI~ 262 (297)
.|+++++... ...++.+.+++|+.+++.+|.+++..++||+|.+ +++++||||..++..
T Consensus 108 ~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~ 169 (511)
T 3usb_A 108 QVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF 169 (511)
T ss_dssp HHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT
T ss_pred HHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh
Confidence 3666664421 2236789999999999999999999999999972 469999999999853
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00037 Score=68.03 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=2.3
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
+++++|... ++.+.+++|+.+++.+|.+|++.++||+| +++++||||..++.
T Consensus 89 ~~~~~m~~~----~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~ 140 (490)
T 4avf_A 89 KHETAIVRD----PVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLR 140 (490)
T ss_dssp HCCC------------------------------------------------------
T ss_pred ccccCcccC----ceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhh
Confidence 356677654 77999999999999999999999999999 57999999999985
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00046 Score=66.38 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=0.5
Q ss_pred hhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 205 V~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++++|... ++.|.+++++.+++.+|.+++++.+||+|. +++++||||..++..
T Consensus 97 ~~~iM~~~----~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 97 TENGIIYD----PITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRF 149 (494)
T ss_dssp C---------------------------------------------------------
T ss_pred HhhcCccC----CeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHh
Confidence 56778654 889999999999999999999999999997 469999999999975
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.00045 Score=67.01 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=26.0
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHHHHH
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQG 263 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaVI~~ 263 (297)
+++++|.+. .+++.+++++.+++.+|.+++++.+||+|.+ +++++||||..++...
T Consensus 109 ~~~~im~~~----~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 109 NFEQGFITD----PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL 166 (514)
T ss_dssp TCCTTSCSS----CCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred hhhhccccC----CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence 466777643 6789999999999999999999999999974 4799999999998753
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0041 Score=60.10 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=0.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
+++.+..++++.+++++|.++++..+||+|.+ ++++|+|+..||+..
T Consensus 159 ~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~--------g~lvGiiT~~Dil~~ 205 (486)
T 2cu0_A 159 EVITVPESIEVEEALKIMIENRIDRLPVVDER--------GKLVGLITMSDLVAR 205 (486)
T ss_dssp -------------------------------------------------------
T ss_pred CCeEECCcCcHHHHHHHHHHcCCCEEEEEecC--------CeEEEEEEHHHHHHh
Confidence 67889999999999999999999999999975 489999999999884
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.0069 Score=61.24 Aligned_cols=44 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAV 260 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaV 260 (297)
.+++.|++|+.+++.||.||++.-+||+|.+ +++++||||..|+
T Consensus 148 Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~ 193 (556)
T 4af0_A 148 PLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDV 193 (556)
T ss_dssp ----------------------------------------------
T ss_pred CeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccc
Confidence 3678999999999999999999999999975 5799999999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 297 | ||||
| d2nyca1 | 140 | d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's | 0.001 |
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.3 bits (83), Expect = 0.001
Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLG 100
F +IP+ + + T + D +++L++ + S P+ D +
Sbjct: 3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII--------DENGYLIN 54
Query: 101 IVDYSAIILWVLE 113
+ + ++ +
Sbjct: 55 VYEAYDVLGLIKG 67
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.88 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.85 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.79 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.77 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.77 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.76 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.75 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.75 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.74 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.74 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.74 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.73 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.73 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.72 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.72 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.7 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.7 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.7 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.69 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.68 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.66 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.66 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.62 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.6 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.59 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.56 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 98.97 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.77 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 98.76 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 98.76 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.75 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 98.74 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 98.74 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 98.71 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 98.71 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 98.63 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 98.57 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 98.56 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 98.54 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 98.51 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 98.5 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 98.45 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 98.32 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 98.24 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 98.23 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 98.21 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.21 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 98.18 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 98.16 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.13 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 98.07 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 97.75 | |
| d1lkvx_ | 213 | FliG {Thermotoga maritima [TaxId: 2336]} | 84.52 | |
| d1tu7a2 | 77 | Class pi GST {Onchocerca volvulus [TaxId: 6282]} | 83.73 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 80.92 |
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=7.9e-23 Score=164.07 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=117.2
Q ss_pred HHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 36 ~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
.++.+|.+.-+..+-. ++.++|.++.++|+.||+++|.+|++.++||+|.+.. +|+|+|++.|++.++....
T Consensus 5 ~~~~~l~~~t~~Dlm~-~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~-------~~vG~is~~Dl~~~~~~~~ 76 (159)
T d2v8qe2 5 VYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQ-------SFVGMLTITDFINILHRYY 76 (159)
T ss_dssp HHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTT-------EEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEeECC-CCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCC-------cEEEEEEHHHHHHHHHhcc
Confidence 3567777777776532 2589999999999999999999999999999987643 8999999999999876544
Q ss_pred HHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhh
Q 022403 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (297)
Q Consensus 116 e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~ 195 (297)
..... .. .. .
T Consensus 77 ~~~~~-------------------------~~----------------------------~~-------------~---- 86 (159)
T d2v8qe2 77 KSALV-------------------------QI----------------------------YE-------------L---- 86 (159)
T ss_dssp HHHTT-------------------------TC----------------------------CC-------------G----
T ss_pred ccccc-------------------------hh----------------------------hh-------------h----
Confidence 32210 00 00 0
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
...............-+.|++++.+++++.+++.+|.+|++||+||+|.++|+++|||||++|+++|..+.+
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~~ 158 (159)
T d2v8qe2 87 --EEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT 158 (159)
T ss_dssp --GGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC
T ss_pred --hhhhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHcC
Confidence 000111122222334456799999999999999999999999999999888899999999999999987653
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.85 E-value=5e-22 Score=162.14 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=112.8
Q ss_pred HHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHH
Q 022403 35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (297)
Q Consensus 35 e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~ 114 (297)
+++.+|+.+.-+..+-. +++++|.+++++|+.+|+++|.+||+.++||+|++. ++|+|+|+..||+.+++..
T Consensus 11 ~~i~~fl~~~~~~dvm~-~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~-------~~~vGiis~~Di~~~l~~~ 82 (179)
T d2ooxe1 11 KEIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYY 82 (179)
T ss_dssp HHHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCEeeeeCC-CCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCC-------CeeEEEEeechHHHHHHhc
Confidence 44555555555544422 257999999999999999999999999999999764 3899999999999987655
Q ss_pred HHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHh
Q 022403 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (297)
Q Consensus 115 ~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L 194 (297)
...... |. ...+.. .......
T Consensus 83 ~~~~~~-----------------------------~~-----------------~~~~~~---------~~~~~~~---- 103 (179)
T d2ooxe1 83 YQSSSF-----------------------------PE-----------------AIAEID---------KFRLLGL---- 103 (179)
T ss_dssp HHHCSC-----------------------------GG-----------------GGGGGG---------GSBHHHH----
T ss_pred cccccc-----------------------------hh-----------------hhhhhh---------ccchhhh----
Confidence 433311 00 000000 0000000
Q ss_pred hhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC----CCCeeEEeehHHHHHHHhhccC
Q 022403 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG----TPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 195 ~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~----~~~i~niITQSaVI~~L~~~~g 269 (297)
....++..+| ..|++++.+++||.+++.+|.++++|||||||.+ +++++|||||++|+++|..+..
T Consensus 104 -----~~~~~~~~~~----~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~~ 173 (179)
T d2ooxe1 104 -----REVERKIGAI----PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK 173 (179)
T ss_dssp -----HHHHHHTTCS----CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTCG
T ss_pred -----cccceeeeec----ccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhhh
Confidence 0112233333 4569999999999999999999999999999863 3479999999999999977653
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.79 E-value=4.1e-19 Score=143.07 Aligned_cols=132 Identities=10% Similarity=0.174 Sum_probs=109.2
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
||+..+.-....+++.+.+|+|+.||+++|.+|++.+.||+|.+ ++++|+|+..||..++.....
T Consensus 1 ~pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--------~~~vG~it~~Dl~~~~~~~~~------- 65 (153)
T d2ooxe2 1 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE--------GTLLNVYESVDVMHLIQDGDY------- 65 (153)
T ss_dssp CBGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG--------GBEEEEEEHHHHHHHHGGGCG-------
T ss_pred CCHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc--------ceEEEEEEeeeeeehhccccc-------
Confidence 68888765446789999999999999999999999999999975 489999999999886221100
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
...+.
T Consensus 66 ---------------------------------------------------------------------------~~~~~ 70 (153)
T d2ooxe2 66 ---------------------------------------------------------------------------SNLDL 70 (153)
T ss_dssp ---------------------------------------------------------------------------GGGGS
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 01234
Q ss_pred chhhHhhh--ccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 204 TVRSIIKS--YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 204 kV~dI~~s--~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.++|+. ....+++++.+++++.+++.+|.++|++++||||. +|+++||||+++|++++..
T Consensus 71 ~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~~ 134 (153)
T d2ooxe2 71 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIY 134 (153)
T ss_dssp BHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHHS
T ss_pred chhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHHc
Confidence 56677643 44677899999999999999999999999999996 5799999999999998864
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=3.5e-19 Score=142.18 Aligned_cols=155 Identities=16% Similarity=0.199 Sum_probs=105.6
Q ss_pred hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHh
Q 022403 41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120 (297)
Q Consensus 41 fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~ 120 (297)
|..++|..+- ..+|+.|+.|+++.+|+++|.+||+.+.||+|.+ ++++|+|+..|++............
T Consensus 1 ~~~~~v~~~m---~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~--------~~lvG~it~~Dl~~~~~~~~~~~~~ 69 (156)
T d2yzqa1 1 YKGVEIEPYY---QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE--------GNLVGIVDETDLLRDSEIVRIMKST 69 (156)
T ss_dssp GGGCBSTTTS---BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT--------SCEEEEEEGGGGGGCGGGCC-----
T ss_pred CCCCCHHHHh---cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC--------CCceeEEeeeechhhhccccccccc
Confidence 3455665554 4689999999999999999999999999999875 4899999999997631111000000
Q ss_pred hhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCC
Q 022403 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200 (297)
Q Consensus 121 ~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~ 200 (297)
.. ... ..+...... .....+. ......
T Consensus 70 -----------------~~-----~~~----------------------~~~~~~~~~-------~~~~~~~--~~~~~~ 96 (156)
T d2yzqa1 70 -----------------EL-----AAS----------------------SEEEWILES-------HPTLLFE--KFELQL 96 (156)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------cc-----ccc----------------------hhhhhhhhh-------hhhhhHH--Hhhhcc
Confidence 00 000 000000000 0000010 111335
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
.+.+|+++|+.. ++++.+++|+.+++.+|.++|++++||+|. +|+++||||+++|++.|
T Consensus 97 ~~~~v~~~m~~~----~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 97 PNKPVAEIMTRD----VIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFDLLKVL 155 (156)
T ss_dssp CCCBGGGTCBSS----CCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHHHGGGG
T ss_pred cCCEeehhcccC----ceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHHHHHHh
Confidence 778999999775 899999999999999999999999999997 47999999999999987
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.1e-18 Score=136.76 Aligned_cols=132 Identities=11% Similarity=0.182 Sum_probs=103.2
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
+.|+..+...+..+++.+..|+|+.||+++|.+|++.+.||+|.+ ++++|+|+..||+.++.......
T Consensus 5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~--------~~~vG~it~~Di~~~~~~~~~~~---- 72 (140)
T d2nyca1 5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN--------GYLINVYEAYDVLGLIKGGIYND---- 72 (140)
T ss_dssp GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHTC--------
T ss_pred cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--------CeEcceehhhHHHHHHhhccccc----
Confidence 578888877778899999999999999999999999999999976 48999999999999743221111
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
.+
T Consensus 73 ------------------------------------------------------------------------------~~ 74 (140)
T d2nyca1 73 ------------------------------------------------------------------------------LS 74 (140)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 11
Q ss_pred cchhhHhh--hccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 203 TTVRSIIK--SYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 203 tkV~dI~~--s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.++.+.+. ..-..|+++|.+++++.+++.+|.+++++++||||. +|++.|+||++||+++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~ 138 (140)
T d2nyca1 75 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 138 (140)
T ss_dssp SBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred cchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence 12222221 122356789999999999999999999999999987 579999999999999984
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=1.1e-18 Score=137.11 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=109.1
Q ss_pred ccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcc
Q 022403 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (297)
Q Consensus 45 PVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~ 124 (297)
||+.|-. .+++.|.+|+|+.+|+++|.++++.+.||+|.+ ++++|+++..||...+....+...
T Consensus 3 ~V~~iMt---~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~--------~~~~g~i~~~di~~~~~~~~~~~~----- 66 (141)
T d3ddja1 3 PVKVFMS---TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD--------NKVVGIVTVVNAIKQLAKAVDKLD----- 66 (141)
T ss_dssp BHHHHSB---CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHHHHHHHHTC-----
T ss_pred eeHHhCc---CCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc--------Cccccccccccchhhhhccccccc-----
Confidence 5555553 478999999999999999999999999999987 389999999999886543332220
Q ss_pred ccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccc
Q 022403 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (297)
Q Consensus 125 ~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tk 204 (297)
. ....+.+
T Consensus 67 ------------------------------------------------------------------~------~~~~~~~ 74 (141)
T d3ddja1 67 ------------------------------------------------------------------P------DYFYGKV 74 (141)
T ss_dssp ------------------------------------------------------------------T------HHHHTCB
T ss_pred ------------------------------------------------------------------c------ccccCCC
Confidence 0 0123578
Q ss_pred hhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 205 V~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
|++||.+. ++.+.+++++.+++.+|.+++++++||||. +|+++|+||+++|++.|.+..
T Consensus 75 v~~im~~~----~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~~~~ 133 (141)
T d3ddja1 75 VKDVMVTN----LVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHHIL 133 (141)
T ss_dssp HHHHSBCC----CCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHhCcc----cccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHHHHH
Confidence 99999865 899999999999999999999999999997 469999999999999998754
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=4.5e-18 Score=134.15 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=103.8
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
+.+.+.+.+|+|+.||++.|.++++.++||+|.+ ++++|+|+..||..++.......
T Consensus 11 ~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~--------~~~vGiis~~Dl~~~~~~~~~~~--------------- 67 (145)
T d1o50a3 11 SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD--------NKLVGMIPVMHLLKVSGFHFFGF--------------- 67 (145)
T ss_dssp CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET--------TEEEEEEEHHHHHHHHHHHHHCC---------------
T ss_pred CCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC--------cceeeeeccchhhhhhhcccccc---------------
Confidence 4577999999999999999999999999999865 48999999999988643321111
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
+. .. .......+......++++|..
T Consensus 68 -----------~~----------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~-- 92 (145)
T d1o50a3 68 -----------IP----------------------------------------KE--ELIRSSMKRLIAKNASEIMLD-- 92 (145)
T ss_dssp -----------CC-------------------------------------------------CCCCCSSCBHHHHCBC--
T ss_pred -----------cc----------------------------------------hh--HHHHhhhhhccccCHHHHcCC--
Confidence 00 00 001112245667778888754
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++.+.+++++.+++.+|.+++++++||||. +|+++|+||+++|++.|.+.
T Consensus 93 ---~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-~g~i~Gvit~~dil~~l~~~ 142 (145)
T d1o50a3 93 ---PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWKG 142 (145)
T ss_dssp ---CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHS
T ss_pred ---CEEEcCCCCHHHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHhc
Confidence 478999999999999999999999999986 57999999999999999764
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.75 E-value=6e-18 Score=133.65 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=111.3
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
+++|..+-. .+++.|++++|+.||+++|.+|++.+.||+|.+.. ++++|+++..|++.++.........
T Consensus 10 ~~~V~diM~---~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~------~~lvg~is~~dl~~~l~~~~~~~~~-- 78 (160)
T d2d4za3 10 NIQVGDIMV---RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDT------NTLLGSIDRTEVEGLLQRRISAYRR-- 78 (160)
T ss_dssp SCBTTSSSB---SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTT------CBEEEEEEHHHHHHHHHHHHHTTSS--
T ss_pred ceEHHHhcC---CCCeEECCCCcHHHHHHHHHhcCCCcccccccccc------ccccccchHHHHHHHHhhccccccc--
Confidence 455555543 58899999999999999999999999999996432 3799999999999875544322210
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
.+ .... ....+.............
T Consensus 79 --------------------------~~-------------------------~~~~-----~~~~~~~~~~~~~~~~~~ 102 (160)
T d2d4za3 79 --------------------------QP-------------------------FEEM-----LTLEEIYRWEQREKNVVV 102 (160)
T ss_dssp --------------------------SC-------------------------CCSC-----CBHHHHHHHHHHHTTCBC
T ss_pred --------------------------cc-------------------------hhhc-----cccchhhhhhhhhccccc
Confidence 00 0000 001111222222344556
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
..++++|... +++|.+++++.+++.+|.+||++++||+| +|+++||||++||++.|.+
T Consensus 103 ~~~~~~~~~~----~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~g 160 (160)
T d2d4za3 103 NFETCRIDQS----PFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG 160 (160)
T ss_dssp CTTSSCEECC----SCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred ceeeecccCC----CEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhCC
Confidence 6688888887 89999999999999999999999999999 4699999999999998863
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=9.8e-19 Score=136.53 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=97.7
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.|..++|+.+|+++|.++++.+.||+|.+ ++++|+|+..||+.+++..
T Consensus 9 ~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------~~~~Giit~~Di~~~~~~~-------------------- 60 (123)
T d1y5ha3 9 AGVTCVGEHETLTAAAQYMREHDIGALPICGDD--------DRLHGMLTDRDIVIKGLAA-------------------- 60 (123)
T ss_dssp ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG--------GBEEEEEEHHHHHHTTGGG--------------------
T ss_pred CCCcEECCcCcHHHHHHHHHHcCCCceEEEecc--------chhhhhhhhhhHhhhhhhc--------------------
Confidence 467889999999999999999999999999875 4899999999998741100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.....+.++++||+..
T Consensus 61 --------------------------------------------------------------~~~~~~~~v~~im~~~-- 76 (123)
T d1y5ha3 61 --------------------------------------------------------------GLDPNTATAGELARDS-- 76 (123)
T ss_dssp --------------------------------------------------------------TCCTTTSBHHHHHTTC--
T ss_pred --------------------------------------------------------------CCCcccceEEEEeecc--
Confidence 0122456789999765
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
++.+.+++++.+++.+|.+++++++||+|. ++++|+||++||++.|
T Consensus 77 --~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 77 --IYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL 122 (123)
T ss_dssp --CCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred --ceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence 999999999999999999999999999994 6899999999999875
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=1.3e-18 Score=136.96 Aligned_cols=122 Identities=14% Similarity=0.241 Sum_probs=101.8
Q ss_pred CCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccc
Q 022403 53 PGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (297)
Q Consensus 53 ~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~ 132 (297)
|+.+|+.++.++|+.+|+++|.+||+.+.||+|.+ ++++|+|+..||..|++...+..
T Consensus 10 p~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~--------~~~vGiit~~di~~~~~~~~~~~-------------- 67 (132)
T d1yava3 10 EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS--------YRLHGLIGTNMIMNSIFGLERIE-------------- 67 (132)
T ss_dssp EGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT--------CBEEEEEEHHHHHHHHBCSSSBC--------------
T ss_pred cccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc--------cccccEEEcchhHHHhhcccccc--------------
Confidence 46799999999999999999999999999999976 38999999999999633211000
Q ss_pred ccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc
Q 022403 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (297)
Q Consensus 133 g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~ 212 (297)
+ +...+.+|+++|...
T Consensus 68 ----------------------------------------------------------~------~~~~~~~v~~~m~~~ 83 (132)
T d1yava3 68 ----------------------------------------------------------F------EKLDQITVEEVMLTD 83 (132)
T ss_dssp ----------------------------------------------------------G------GGTTTSBHHHHSBCS
T ss_pred ----------------------------------------------------------c------ccccccccccccccc
Confidence 1 223467899999754
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+.++.+++++.+++.+|.+++ .+||||. +|+++||||+++|++.|.+.
T Consensus 84 ----~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~~~ 131 (132)
T d1yava3 84 ----IPRLHINDPIMKGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELNKH 131 (132)
T ss_dssp ----CCEEETTSBHHHHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHHHH
T ss_pred ----ccccccchhHHHHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHHhh
Confidence 899999999999999998875 4999997 57999999999999999864
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.74 E-value=6.4e-18 Score=134.35 Aligned_cols=126 Identities=15% Similarity=0.194 Sum_probs=103.7
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+|+|+.+|+++|.+||+...||+|.+ ++|+|+|+..||+.++........
T Consensus 10 ~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~--------~~~~Giit~~dl~~~~~~~~~~~~--------------- 66 (139)
T d2o16a3 10 RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------KKLLGIVSQRDLLAAQESSLQRSA--------------- 66 (139)
T ss_dssp ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHHHCC------------------
T ss_pred CCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc--------ccccccccHHHHHHHHHhhhhhhh---------------
Confidence 467899999999999999999999999999976 389999999999986433221110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.....+.+++|++||++.
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~v~~im~~~-- 84 (139)
T d2o16a3 67 ------------------------------------------------------------QGDSLAFETPLFEVMHTD-- 84 (139)
T ss_dssp ------------------------------------------------------------------CCCBHHHHSCSC--
T ss_pred ------------------------------------------------------------cccccccccchhHhhccc--
Confidence 001234678899999876
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
++.|.+++++.+++.+|.+++++++||+|. |+++|+||.++|++.+....+
T Consensus 85 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~~~~ 135 (139)
T d2o16a3 85 --VTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAINLLE 135 (139)
T ss_dssp --EEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHHHHH
T ss_pred --cccccccchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHHHHh
Confidence 999999999999999999999999999994 699999999999999987654
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.73 E-value=3e-18 Score=134.67 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=98.3
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
+.+++.|.+++|+.||+++|.++++.+.||.|.+ +++|+|+..||+..+..
T Consensus 12 ~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~---------~~vGiit~~Di~~~~~~-------------------- 62 (127)
T d2rc3a1 12 GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE---------KLVGILTERDFSRKSYL-------------------- 62 (127)
T ss_dssp CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEHHHHHHHGGG--------------------
T ss_pred CCccEEECCcCcHHHHHHHHHHcCCCEEEEEECC---------eEEEEEEccchhhhhhh--------------------
Confidence 3578999999999999999999999999999854 89999999999873100
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
. .....+.+|+++|++.
T Consensus 63 -----------~---------------------------------------------------~~~~~~~~v~~im~~~- 79 (127)
T d2rc3a1 63 -----------L---------------------------------------------------DKPVKDTQVKEIMTRQ- 79 (127)
T ss_dssp -----------S---------------------------------------------------SSCGGGSBGGGTSBCS-
T ss_pred -----------h---------------------------------------------------cccccceeEeeeccce-
Confidence 0 0122456799999865
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++++.+++++.+++.+|.+++++++||+| +|+++|+||+.|+++.+.
T Consensus 80 ---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~i 126 (127)
T d2rc3a1 80 ---VAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAI 126 (127)
T ss_dssp ---CCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred ---eEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence 89999999999999999999999999999 469999999999998763
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.3e-17 Score=131.82 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=107.9
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
+.||+.+-. .+++.|++++|+.+|+++|.++++...||+|.+ ++++|+|+..||+.+++..
T Consensus 4 ~~pV~~im~---~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~--------~~~~Giit~~di~~~~~~~-------- 64 (132)
T d2yzia1 4 KAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD--------GNVVGFFTKSDIIRRVIVP-------- 64 (132)
T ss_dssp TSBGGGTCB---CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT--------SCEEEEEEHHHHHHHTTTT--------
T ss_pred CCcHHHHcC---CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc--------ceeeeeeeHHHHHHHHhhc--------
Confidence 458888864 589999999999999999999999999999987 4899999999999841100
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
+...+
T Consensus 65 ---------------------------------------------------------------------------~~~~~ 69 (132)
T d2yzia1 65 ---------------------------------------------------------------------------GLPYD 69 (132)
T ss_dssp ---------------------------------------------------------------------------CCCTT
T ss_pred ---------------------------------------------------------------------------cCccc
Confidence 11235
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
++|+++|... ++.+++++++.+++.+|.+|+++++||+| +|+++|+||+++|++.+.+-.
T Consensus 70 ~~v~~im~~~----~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~~~l 129 (132)
T d2yzia1 70 IPVERIMTRN----LITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASRRRL 129 (132)
T ss_dssp SBGGGTCBCS----CCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHCCS
T ss_pred eeEeeccccc----ccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHHHH
Confidence 7899999765 89999999999999999999999999988 468999999999999887654
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.72 E-value=1.4e-17 Score=130.47 Aligned_cols=115 Identities=18% Similarity=0.361 Sum_probs=100.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.+|+++|.++++...||.|.+ +++|+|+..||+.++.+
T Consensus 12 ~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~---------~~~Givt~~dl~~~~~~--------------------- 61 (127)
T d2ef7a1 12 TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN---------KPVGIITERDIVKAIGK--------------------- 61 (127)
T ss_dssp CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEHHHHHHHHHT---------------------
T ss_pred CCCeEECCcCcHHHHHHHHHHcCCceEEeeccc---------chhhhcchhHHHHHHHh---------------------
Confidence 578999999999999999999999999999865 89999999999884210
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+...++++.++|...
T Consensus 62 ---------------------------------------------------------------~~~~~~~v~~~~~~~-- 76 (127)
T d2ef7a1 62 ---------------------------------------------------------------GKSLETKAEEFMTAS-- 76 (127)
T ss_dssp ---------------------------------------------------------------TCCTTCBGGGTSEEC--
T ss_pred ---------------------------------------------------------------hccccchhhhhhhhh--
Confidence 112457889998764
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++.|.+++++.+++.+|.+++++++||+|. +|+++|+||++|+++.|.+.
T Consensus 77 --~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~~~ 126 (127)
T d2ef7a1 77 --LITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDM 126 (127)
T ss_dssp --CCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred --ccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHhh
Confidence 899999999999999999999999999987 57999999999999999764
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=7.2e-18 Score=133.63 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=100.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.|..++|+.||+++|.++++.+.||+|.+ ++++|+|+..||..++...
T Consensus 20 ~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~--------~~~~Gvit~~di~~~l~~~-------------------- 71 (145)
T d2v8qe1 20 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK--------GRVVDIYSKFDVINLAAEK-------------------- 71 (145)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT--------SBEEEEEEGGGTGGGGGSS--------------------
T ss_pred CCceEEcCcCcHHHHHHHHHHcCCCcccccccC--------CceEEEEEcchhhhhhhcc--------------------
Confidence 578999999999999999999999999999976 4899999999998741100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc--
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY-- 212 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~-- 212 (297)
.....+.+|.+.+...
T Consensus 72 --------------------------------------------------------------~~~~~~~~v~~~~~~~~~ 89 (145)
T d2v8qe1 72 --------------------------------------------------------------TYNNLDVSVTKALQHRSH 89 (145)
T ss_dssp --------------------------------------------------------------CCCCCSSBHHHHGGGCCS
T ss_pred --------------------------------------------------------------cccchhhhhhhccchhhh
Confidence 0112344455544322
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
-..+++++.+++++.+++.+|.+++++++||+|. +|+++|+||+++++++|...-|
T Consensus 90 ~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv~~~~ 145 (145)
T d2v8qe1 90 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVLTGG 145 (145)
T ss_dssp CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHSSCC
T ss_pred ccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHHhcCC
Confidence 2346889999999999999999999999999986 5799999999999999986543
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=6.5e-17 Score=125.85 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=97.8
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.|..++|+.||++.|.++++...||.|.+ +++|+|+..||..++.+
T Consensus 8 ~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~---------~~~Gvit~~Di~~~l~~--------------------- 57 (120)
T d1pbja3 8 TDVDTIDITASLEDVLRNYVENAKGSSVVVKEG---------VRVGIVTTWDVLEAIAE--------------------- 57 (120)
T ss_dssp CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETT---------EEEEEEEHHHHHHHHHH---------------------
T ss_pred CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCC---------cEEEEEEeeeccccccc---------------------
Confidence 477899999999999999999999999999864 89999999999985221
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
...+.+++|+++|...
T Consensus 58 --------------------------------------------------------------~~~~~~~~v~~~m~~~-- 73 (120)
T d1pbja3 58 --------------------------------------------------------------GDDLAEVKVWEVMERD-- 73 (120)
T ss_dssp --------------------------------------------------------------TCCTTTSBHHHHCBCG--
T ss_pred --------------------------------------------------------------cccccceeEeeecccc--
Confidence 0234568899999775
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
|..|++++++.+++.+|.+|+++++||+| +|+++|+||+++|++..
T Consensus 74 --~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 74 --LVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAK 119 (120)
T ss_dssp --GGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred --cccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcC
Confidence 99999999999999999999999999998 46999999999999853
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.70 E-value=2.7e-17 Score=129.98 Aligned_cols=111 Identities=16% Similarity=0.296 Sum_probs=97.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATA 129 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a 129 (297)
.+++.+++++|+.+|++.|.++ ++...||+|.+ ++|+|+++..++.. +
T Consensus 9 ~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~--------~~l~G~v~~~~l~~--------~----------- 61 (127)
T d2ouxa2 9 TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE--------NHLVGVISLRDLIV--------N----------- 61 (127)
T ss_dssp SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT--------CBEEEEEEHHHHTT--------S-----------
T ss_pred CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC--------CeEEEEEEeecccc--------c-----------
Confidence 5789999999999999999888 58899999987 48999998766654 1
Q ss_pred cccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHh
Q 022403 130 AGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSII 209 (297)
Q Consensus 130 ~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~ 209 (297)
..+++|++||
T Consensus 62 ----------------------------------------------------------------------~~~~~v~~im 71 (127)
T d2ouxa2 62 ----------------------------------------------------------------------DDDTLIADIL 71 (127)
T ss_dssp ----------------------------------------------------------------------CTTSBHHHHS
T ss_pred ----------------------------------------------------------------------cccEEhhhhc
Confidence 0357899999
Q ss_pred hhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 210 KSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 210 ~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+. +++|.+++++.+++.+|.+|+++++||||. +|+++|+||+.+|++.+.+.
T Consensus 72 ~~~----~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~ee 124 (127)
T d2ouxa2 72 NER----VISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDDE 124 (127)
T ss_dssp BSC----CCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHH
T ss_pred cCC----CccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHHHH
Confidence 876 889999999999999999999999999996 57999999999999998763
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=1.3e-17 Score=133.64 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=102.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.|+.++|+.||+++|.++++...||+|.+ ++++|+|+..||+++++..
T Consensus 11 ~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~--------~~~~Giit~~di~~~~~~~-------------------- 62 (142)
T d1pvma4 11 SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------GNDVGLLSERSIIKRFIPR-------------------- 62 (142)
T ss_dssp TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------SCEEEEEEHHHHHHHTGGG--------------------
T ss_pred CCCcEECCcCcHHHHHHHHHHCCCceEeeeccC--------CcccceEEeechhhhhhhh--------------------
Confidence 578999999999999999999999999999876 3899999999999851100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.....+++|+++|.+.
T Consensus 63 --------------------------------------------------------------~~~~~~~~v~~im~~~-- 78 (142)
T d1pvma4 63 --------------------------------------------------------------NKKPDEVPIRLVMRKP-- 78 (142)
T ss_dssp --------------------------------------------------------------CCCGGGSBGGGTSBSS--
T ss_pred --------------------------------------------------------------cccccccccccccccc--
Confidence 0112457899999754
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
++.+.+++++.+++.+|.+++++++||||. +|+++|+||+.+|++.|.+..
T Consensus 79 --~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~l~~~~ 129 (142)
T d1pvma4 79 --IPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLSRAS 129 (142)
T ss_dssp --CCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSCHHH
T ss_pred --cccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHHHhhhh
Confidence 999999999999999999999999999997 579999999999999887643
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=6.1e-17 Score=131.84 Aligned_cols=143 Identities=18% Similarity=0.213 Sum_probs=103.4
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
+.+..++|+.||.++|.++++.+.||++.+.. ++++|+|+..||+.++......... ....
T Consensus 20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~------~~lvG~is~~dl~~~l~~~~~~~~~---~~~~---------- 80 (169)
T d2j9la1 20 VLTQDSMTVEDVETIISETTYSGFPVVVSRES------QRLVGFVLRRDLIISIENARKKQDG---VVST---------- 80 (169)
T ss_dssp CEESSCEEHHHHHHHHHHCCCSEEEEESCTTT------CBEEEEEEHHHHHHHHHHHHTSCSC---CCTT----------
T ss_pred EECCCcCCHHHHHHHHHHcCCCceeeeecCCC------CeEEEEEEhHHHHHHHhcccccccc---cccc----------
Confidence 44678889999999999999999999965432 3799999999999975432211100 0000
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
. .. ......+ ..........+|++||... .
T Consensus 81 ---~---~~---------------------------~~~~~~~-------------~~~~~~~~~~~v~~im~~~----~ 110 (169)
T d2j9la1 81 ---S---II---------------------------YFTEHSP-------------PLPPYTPPTLKLRNILDLS----P 110 (169)
T ss_dssp ---C---EE---------------------------ECSSSCC-------------CCCTTCCCCEECGGGEESS----C
T ss_pred ---h---hh---------------------------hhcccch-------------hhhhccccccchhhhccCC----C
Confidence 0 00 0000000 0011234578899999876 7
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCc
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD 271 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~d 271 (297)
++|.+++++.+++.+|.+++.+++||+| +|+++||||+++|+++|.+..+.+
T Consensus 111 ~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~~~~~~ 162 (169)
T d2j9la1 111 FTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQMANQD 162 (169)
T ss_dssp CEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHCC--
T ss_pred EEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999998 468999999999999999987753
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.68 E-value=1.4e-16 Score=124.80 Aligned_cols=117 Identities=12% Similarity=0.249 Sum_probs=93.0
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a 136 (297)
.++|++++|+.||+++|.++++.+.||+|.... ++++|+|+..||.. +..
T Consensus 7 pvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~------~~lvGivt~~Di~~--------~~~---------------- 56 (126)
T d1zfja4 7 PFFLTPEHKVSEAEELMQRYRISGVPIVETLAN------RKLVGIITNRDMRF--------ISD---------------- 56 (126)
T ss_dssp CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT------CBEEEEEEHHHHHH--------CSC----------------
T ss_pred ceEECCCCCHHHHHHHHHHhCCCcEEEEeeccC------CeEEEEeEHHHHHH--------hhc----------------
Confidence 468999999999999999999999999996321 38999999999865 100
Q ss_pred ccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCC
Q 022403 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (297)
Q Consensus 137 ~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaP 216 (297)
.++.+.+.+ ...|
T Consensus 57 ----------------------------------------------------------------~~~~~~~~~---~~~~ 69 (126)
T d1zfja4 57 ----------------------------------------------------------------YNAPISEHM---TSEH 69 (126)
T ss_dssp ----------------------------------------------------------------SSSBTTTSC---CCSC
T ss_pred ----------------------------------------------------------------cCCceeeee---eccc
Confidence 011112222 1236
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh-ccCCc
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG-CKGRD 271 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~-~~g~d 271 (297)
++++.+++++.+++.+|.+++++++||||. +|+++||||+++|++.+.. ...+|
T Consensus 70 ~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~~p~a~kD 124 (126)
T d1zfja4 70 LVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEFPHAAKD 124 (126)
T ss_dssp CCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHCTTCCBC
T ss_pred eeecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhhCcccccc
Confidence 889999999999999999999999999987 4799999999999998873 44443
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.66 E-value=5.3e-17 Score=126.87 Aligned_cols=124 Identities=9% Similarity=0.089 Sum_probs=100.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.|.+++|+.+|+++|.++|+.+.||+|. +++|+++..++..|+........
T Consensus 10 ~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~----------~lvg~~~~~~~~~~~~~~~~~~~---------------- 63 (135)
T d3ddja2 10 NPPILSKEDRLGSAFKKINEGGIGRIIVANE----------KIEGLLTTRDLLSTVESYCKDSC---------------- 63 (135)
T ss_dssp SCCEECTTSBHHHHHHHTTGGGCCEEEEESS----------SEEEEEEHHHHHGGGTTCC---C----------------
T ss_pred CCeEECCCCcHHHHHHHHHHhCCeEEEEEec----------ceeceeeccchhhhhccccccch----------------
Confidence 4577999999999999999999999999975 59999999999986322111110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.. ... ..+.+++|+++|...
T Consensus 64 ------------------------------------------------~~---~~~------~~~~~~~v~~im~~~--- 83 (135)
T d3ddja2 64 ------------------------------------------------SQ---GDL------YHISTTPIIDYMTPN--- 83 (135)
T ss_dssp ------------------------------------------------CH---HHH------HHHHTSBGGGTSEES---
T ss_pred ------------------------------------------------hh---hhc------cccccCCHHHHhCCc---
Confidence 00 000 123468899999776
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++++.+++++.+++.+|.+++++++||||. +|+++|+||+++|++.+.+.
T Consensus 84 -~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~~l 133 (135)
T d3ddja2 84 -PVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDL 133 (135)
T ss_dssp -CCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGS
T ss_pred -cceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHHHh
Confidence 999999999999999999999999999997 57999999999999988753
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=8.4e-17 Score=129.62 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=100.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATA 129 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a 129 (297)
.+++.+++++||.||++.|.+| ++.+.||+|.+ ++|+|+|...||..+
T Consensus 9 ~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~--------~~l~G~v~~~dl~~~------------------- 61 (144)
T d2yvxa2 9 PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------GRLKGVLSLRDLIVA------------------- 61 (144)
T ss_dssp SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT--------CBBCCBCBHHHHTTS-------------------
T ss_pred CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC--------CCEecccchhhhhhc-------------------
Confidence 4789999999999999999888 48899999987 489999999887651
Q ss_pred cccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHh
Q 022403 130 AGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSII 209 (297)
Q Consensus 130 ~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~ 209 (297)
..++++++||
T Consensus 62 ----------------------------------------------------------------------~~~~~v~~im 71 (144)
T d2yvxa2 62 ----------------------------------------------------------------------DPRTRVAEIM 71 (144)
T ss_dssp ----------------------------------------------------------------------CTTCBSTTTS
T ss_pred ----------------------------------------------------------------------ccccchHHhc
Confidence 0246788898
Q ss_pred hhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCc
Q 022403 210 KSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD 271 (297)
Q Consensus 210 ~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~d 271 (297)
... ++++.+++++.+|+.+|.+|+++++||||. +|+++|+||..+|++.+.+....|
T Consensus 72 ~~~----~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~~e~~ed 128 (144)
T d2yvxa2 72 NPK----VVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEAEATED 128 (144)
T ss_dssp BSS----CCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHHHHHHHH
T ss_pred ccC----CccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHHHHhHHH
Confidence 876 899999999999999999999999999997 579999999999999998766543
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=2e-16 Score=123.64 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=78.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++++++|+|+.+|+++|.++++.+.||+|.+ ++|+|+|+..|++. +.
T Consensus 10 ~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~--------~~~~G~it~~dl~~--------~~---------------- 57 (122)
T d2yzqa2 10 NPVTITLPATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILV--------NP---------------- 57 (122)
T ss_dssp SCCCEESSCC------------CCEEEEECTT--------CCEEEEEESSCC----------------------------
T ss_pred CCEEECCcCcHHHHHHHHHHcCCcEEEEEecc--------ccchhhhhcchhhh--------hh----------------
Confidence 57889999999999999999999999999876 48999999888765 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.++++.++|...
T Consensus 58 -----------------------------------------------------------------~~~~~~~~~~~~--- 69 (122)
T d2yzqa2 58 -----------------------------------------------------------------DEEQLAMLVKRD--- 69 (122)
T ss_dssp -----------------------------------------------------------------------CCCBSC---
T ss_pred -----------------------------------------------------------------cccchhhccccc---
Confidence 124566777665
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++.+.+++++.+++.+|.+|+++++||||. +|+++|+||.++|++.+.+.
T Consensus 70 -~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~~~~~~ 119 (122)
T d2yzqa2 70 -VPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAK 119 (122)
T ss_dssp -CCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTT
T ss_pred -eeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHHHHHhH
Confidence 788999999999999999999999999996 57999999999999866543
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.60 E-value=1.9e-15 Score=117.62 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=95.2
Q ss_pred ccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcc
Q 022403 45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV 124 (297)
Q Consensus 45 PVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~ 124 (297)
.|+.+-. .+++.+++++|+.||+++|.++++.+.||++.+.. ++++|+++..+++..+...
T Consensus 2 ~V~dim~---~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~------~~~iGi~~~~dl~~~~~~~---------- 62 (131)
T d2riha1 2 RTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDNP------KRPVAVVSERDILRAVAQR---------- 62 (131)
T ss_dssp BGGGGCC---SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEE------EEEEEEEEHHHHHHHHHTT----------
T ss_pred CHHHhcc---CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCC------CEEEEEEeeeccccccccc----------
Confidence 4555553 46799999999999999999999999999965432 4899999999998731100
Q ss_pred ccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccc
Q 022403 125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT 204 (297)
Q Consensus 125 ~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tk 204 (297)
......
T Consensus 63 --------------------------------------------------------------------------~~~~~~ 68 (131)
T d2riha1 63 --------------------------------------------------------------------------LDLDGP 68 (131)
T ss_dssp --------------------------------------------------------------------------CCTTSB
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 001111
Q ss_pred hhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 205 V~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+..++ .+...+.+++++.+++.+|.+|+++++||||. +|+++||||++++++.++.
T Consensus 69 ~~~~~-----~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll~~~~~ 124 (131)
T d2riha1 69 AMPIA-----NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERAI 124 (131)
T ss_dssp SGGGC-----BCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHHH
T ss_pred ccccc-----ccceeEeeecchHHHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence 22222 23678999999999999999999999999996 5799999999999987654
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=2.2e-15 Score=117.22 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=97.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.++..+.+++|+.||+++|.+++..+.||+|.+ ++|+|+|+..||+.+ .
T Consensus 9 ~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~--------~~~~Gii~~~dl~~~--------~--------------- 57 (121)
T d1vr9a3 9 QDFPMVEESATVRECLHRMRQYQTNECIVKDRE--------GHFRGVVNKEDLLDL--------D--------------- 57 (121)
T ss_dssp SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT--------SBEEEEEEGGGGTTS--------C---------------
T ss_pred CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC--------ceeEEEeehhhhhhh--------h---------------
Confidence 467789999999999999999999999999876 489999998888651 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.+++|.+++...
T Consensus 58 ------------------------------------------------------------------~~~~v~~~~~~~-- 69 (121)
T d1vr9a3 58 ------------------------------------------------------------------LDSSVFNKVSLP-- 69 (121)
T ss_dssp ------------------------------------------------------------------TTSBSGGGCBCT--
T ss_pred ------------------------------------------------------------------ccccccccccCc--
Confidence 134688887764
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
++++++++++.+++.+|.+++.+++||||. +|++.|+||..++++.|.+-.
T Consensus 70 --~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~~~l 120 (121)
T d1vr9a3 70 --DFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEAL 120 (121)
T ss_dssp --TCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHSC
T ss_pred --cEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHHHhc
Confidence 889999999999999999999999999998 579999999999999987643
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.56 E-value=1.8e-16 Score=124.18 Aligned_cols=114 Identities=11% Similarity=0.200 Sum_probs=56.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
..++|.+++|+.||+++|.+|+|.+.||+|.+.. .+|++|||+..||..+ .+.
T Consensus 5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~-----~~~lvGivT~~Di~~~-~~~--------------------- 57 (120)
T d1jr1a4 5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRM-----GSRLVGIISSRDIDFL-KEE--------------------- 57 (120)
T ss_dssp TTCC----CCCC--CCBC---------------C-----TTCCC------------------------------------
T ss_pred CCEEECCcCCHHHHHHHHHHhCCCeEEEeecccc-----CCeEeeeeeeeeeeeh-hcc---------------------
Confidence 3468999999999999999999999999986321 1489999999997542 000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+.++.+++. ...
T Consensus 58 ----------------------------------------------------------------~~~~~~~~~~~--~~~ 71 (120)
T d1jr1a4 58 ----------------------------------------------------------------EHDRFLEEIMT--KRE 71 (120)
T ss_dssp ------------------------------------------------------------------------CCS--BTT
T ss_pred ----------------------------------------------------------------ccCceeEEEEe--ecc
Confidence 00122233322 224
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+++++.++.++.+++.+|.+|+++++||||. +|+++||||++||++-
T Consensus 72 ~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k~ 118 (120)
T d1jr1a4 72 DLVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKKN 118 (120)
T ss_dssp TSCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHHH
T ss_pred CceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhhc
Confidence 5889999999999999999999999999997 4699999999999974
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=98.97 E-value=5.3e-10 Score=87.04 Aligned_cols=76 Identities=16% Similarity=0.338 Sum_probs=66.0
Q ss_pred cchhhHh--hhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhcccc
Q 022403 203 TTVRSII--KSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP 280 (297)
Q Consensus 203 tkV~dI~--~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~ 280 (297)
++|+++| .+. +..|++++|+.+++.+|++|+++++||+|.+ |+++|+||..+|++.+.+.... +++...+.+
T Consensus 2 ~tv~~~mip~~~----v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~-~~~~~~~~~ 75 (132)
T d1yava3 2 ATVGQFMIEADK----VAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERI-EFEKLDQIT 75 (132)
T ss_dssp CBHHHHSEEGGG----SCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSB-CGGGTTTSB
T ss_pred CCHHHccccccc----eEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccc-ccccccccc
Confidence 6899999 555 8999999999999999999999999999974 7999999999999999887755 456666777
Q ss_pred cccc
Q 022403 281 ISDL 284 (297)
Q Consensus 281 lsel 284 (297)
++++
T Consensus 76 v~~~ 79 (132)
T d1yava3 76 VEEV 79 (132)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7775
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.77 E-value=3.2e-09 Score=82.29 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=63.7
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhccccccc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD 283 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~lse 283 (297)
+|+++|+.. +++|.+++|+.+++.+|.+++.+++||+|.+ +++.|+||..++++.+.......-......+++++
T Consensus 3 ~V~~iMt~~----v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~ 77 (141)
T d3ddja1 3 PVKVFMSTK----VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD 77 (141)
T ss_dssp BHHHHSBCS----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred eeHHhCcCC----CeEEcCcCcHHHHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence 599999987 9999999999999999999999999999984 69999999999999987665443233445666666
Q ss_pred c
Q 022403 284 L 284 (297)
Q Consensus 284 l 284 (297)
+
T Consensus 78 i 78 (141)
T d3ddja1 78 V 78 (141)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=8.5e-09 Score=80.44 Aligned_cols=61 Identities=11% Similarity=0.252 Sum_probs=55.5
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
..+|+++|.+. ++++++++|+.+++.+|.+++++++||+|. +|++.|+||..++++.+...
T Consensus 4 ~~pV~~im~~~----~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~ 64 (132)
T d2yzia1 4 KAPIKVYMTKK----LLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVP 64 (132)
T ss_dssp TSBGGGTCBCC----CCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTT
T ss_pred CCcHHHHcCCC----CeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhc
Confidence 45799999876 999999999999999999999999999998 46999999999999887654
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.76 E-value=9.5e-09 Score=81.25 Aligned_cols=61 Identities=10% Similarity=0.230 Sum_probs=55.5
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.||++||+.. |.+|++++|+.+++.+|.+++++++||+|. +|++.|+||..++++.+....
T Consensus 3 m~v~dim~~~----~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~ 63 (142)
T d1pvma4 3 MRVEKIMNSN----FKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRN 63 (142)
T ss_dssp CBGGGTSBTT----CCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGC
T ss_pred EEHHHhCCCC----CcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhc
Confidence 4799999988 999999999999999999999999999997 479999999999998776543
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.75 E-value=2.1e-09 Score=84.71 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
|++.+|+++|... ++.|.+++++.+|+.+|.+++++++||+|. +|+++|+||+.++++.+..
T Consensus 1 ~~~~~v~~~m~r~----v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~ 62 (156)
T d2yzqa1 1 YKGVEIEPYYQRY----VSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEI 62 (156)
T ss_dssp GGGCBSTTTSBSC----CCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGG
T ss_pred CCCCCHHHHhcCC----CeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcc
Confidence 6789999999888 999999999999999999999999999996 5799999999999876544
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.74 E-value=6.1e-09 Score=80.06 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=54.2
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
||+|+|... +++|++++|+.+++.+|.+++.+.+||+|. |++.|+||+.++++.+.+..
T Consensus 1 kV~diM~~~----~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~ 59 (120)
T d1pbja3 1 RVEDVMVTD----VDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGD 59 (120)
T ss_dssp CHHHHCBCS----CCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTC
T ss_pred ChHHhCCCC----CeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccc
Confidence 699999986 999999999999999999999999999984 69999999999999987643
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=98.74 E-value=2e-08 Score=77.73 Aligned_cols=62 Identities=10% Similarity=0.193 Sum_probs=54.3
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
+|++||... -.++++|.+++|+.+++.+|.+++++.+||+| +++++|+||..++++.+....
T Consensus 3 tV~dim~~k-~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~--~~~~vGiit~~Di~~~~~~~~ 64 (127)
T d2rc3a1 3 TVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLD 64 (127)
T ss_dssp BHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSS
T ss_pred cHHHHHccC-CCccEEECCcCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEccchhhhhhhhc
Confidence 699999863 34589999999999999999999999999999 468999999999998775544
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.71 E-value=4.4e-09 Score=81.00 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=53.1
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|+|+|+|.+. ++.+.+++|+.+|+.+|.+++++++||+|.+ |+++|+||..++++.+.
T Consensus 1 tt~~diM~~~----~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~ 58 (123)
T d1y5ha3 1 TTARDIMNAG----VTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGL 58 (123)
T ss_dssp CCHHHHSEET----CCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTG
T ss_pred CCHHHhcCCC----CcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhh
Confidence 7899999876 8999999999999999999999999999874 69999999999987544
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=98.71 E-value=8.1e-09 Score=81.00 Aligned_cols=63 Identities=14% Similarity=0.273 Sum_probs=56.8
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
.+|+|+|... ++++.+++|+.+|+.+|.+++.+++||+|. +++++|+||+.++++.+.....+
T Consensus 2 i~v~diM~~~----~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~ 64 (139)
T d2o16a3 2 IKVEDMMTRH----PHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQR 64 (139)
T ss_dssp CBGGGTSEES----CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC-
T ss_pred EEHHHhCcCC----CeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhh
Confidence 4799999876 899999999999999999999999999996 47999999999999999886554
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.63 E-value=3.9e-08 Score=75.91 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=56.4
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
++.+|+++|.+. ++.+++++|+.+++.+|.+++++.+||+|. +++.|+||..++++.+.+...
T Consensus 2 ~~~~V~d~m~~~----~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~ 64 (127)
T d2ef7a1 2 EEEIVKEYMKTQ----VISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS 64 (127)
T ss_dssp CCCBGGGTSBCS----CCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC
T ss_pred CccCHHHhCCCC----CeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc
Confidence 356899999875 999999999999999999999999999994 589999999999999886544
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=2.3e-08 Score=78.82 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=59.6
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
++-++.|+|... .+.+.++.+.|+.+++.+|.+||++++||+|..+++++|+||..++++.+..+..
T Consensus 11 ~~~t~~Dlm~~~--~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~ 77 (159)
T d2v8qe2 11 KSHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYK 77 (159)
T ss_dssp HHSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCEEEeECCCC--CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence 567899999544 4589999999999999999999999999999878899999999999999987654
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=5.3e-08 Score=78.19 Aligned_cols=65 Identities=15% Similarity=0.315 Sum_probs=57.4
Q ss_pred ccchhhHhhhccCCCceEec--CCCCHHHHHHHHhhcCCceeEEEcC-CCCCeeEEeehHHHHHHHhh
Q 022403 202 STTVRSIIKSYRWAPFLPVA--TDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~--~~~sll~vllLLsK~rl~rvPVVd~-~~~~i~niITQSaVI~~L~~ 266 (297)
.+.++|||...++.|.+.|. .+.|+-+++.+|.+|+++++|||+. ++++++|+||++++++.|..
T Consensus 2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~ 69 (169)
T d2j9la1 2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN 69 (169)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhc
Confidence 47899999999999988764 5679999999999999999999953 46799999999999999974
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=6.1e-08 Score=75.59 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=57.2
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
.+.+++++ +.-.|.++++|+++.++.+|+.+|.+++++++||+|. +|+++|+||.+++++.+....+.
T Consensus 4 ~~~~i~~l-~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~~ 71 (140)
T d2nyca1 4 LKIPIGDL-NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYN 71 (140)
T ss_dssp GGSBGGGS-SCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC---
T ss_pred ccCcHHHh-CCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhcccc
Confidence 45667776 3455788999999999999999999999999999997 46999999999999999877654
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=9.7e-08 Score=74.07 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=51.9
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
||++|++.-.-. ++.|.+++++.+++.+|.+++++++||+|. +++++|+||+.++++.+...
T Consensus 2 k~~~v~~~m~~~-p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vGiis~~Dl~~~~~~~ 63 (145)
T d1o50a3 2 KVKDVCKLISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFH 63 (145)
T ss_dssp BHHHHTTSSCCC-CEEECTTCBHHHHHHHHHHSTTCCEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred cceEhHHhCCCC-CEEECCcCcHHHHHHHHHHcCCceEEEecc-Ccceeeeeccchhhhhhhcc
Confidence 456655544444 589999999999999999999999999996 46999999999999987654
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=98.50 E-value=9e-08 Score=74.38 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=57.9
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC-CCCeeEEeehHHHHHHHhhcc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~-~~~i~niITQSaVI~~L~~~~ 268 (297)
.+.+|+|||.+. ++.|.+++|+.+++.+|.+++.+.+||+|.+ ++.++|++|+.+++..|....
T Consensus 9 ~~~~V~diM~~~----~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~ 73 (160)
T d2d4za3 9 YNIQVGDIMVRD----VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI 73 (160)
T ss_dssp SSCBTTSSSBSS----CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred cceEHHHhcCCC----CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhcc
Confidence 478999999865 9999999999999999999999999999964 468999999999999998654
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.45 E-value=9.5e-08 Score=76.56 Aligned_cols=66 Identities=12% Similarity=0.144 Sum_probs=58.2
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
++-++.|+|... ++.+.++.+.++.+|+.+|.+++++++||+|+++++++|+||..|+++.|..+.
T Consensus 18 ~~~~~~dvm~~s--~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~ 83 (179)
T d2ooxe1 18 RSRTSYDVLPTS--FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY 83 (179)
T ss_dssp HHSBHHHHSCSE--EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred cCCEeeeeCCCC--CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcc
Confidence 455799999743 248999999999999999999999999999988889999999999999887653
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.32 E-value=2.9e-07 Score=70.48 Aligned_cols=63 Identities=8% Similarity=0.083 Sum_probs=55.5
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC-CCCeeEEeehHHHHHHHhhccCC
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~-~~~i~niITQSaVI~~L~~~~g~ 270 (297)
||+|||++. ++.|++++|+.+++.+|.+++.+++||++.+ ++++.|++|..++++.+......
T Consensus 2 ~V~dim~~~----~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~ 65 (131)
T d2riha1 2 RTSELLKRP----PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL 65 (131)
T ss_dssp BGGGGCCSC----CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT
T ss_pred CHHHhccCC----CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccc
Confidence 799999775 8999999999999999999999999999543 46899999999999988765543
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.24 E-value=5.4e-07 Score=70.10 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=57.9
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.|.+.+++++.-. .|..++.|.+++|+.+|+.+|.+++++++||+|. +|+++|+||.+++++.+....
T Consensus 5 ~f~~~~l~~l~i~-~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~ 72 (145)
T d2v8qe1 5 EFMSKSLEELQIG-TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKT 72 (145)
T ss_dssp GGGGSBHHHHTCS-BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSC
T ss_pred HHhhCCHHHHcCC-CCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhccc
Confidence 4566789988743 2456899999999999999999999999999997 569999999999998887643
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.23 E-value=8.1e-07 Score=68.38 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=44.2
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcC-CCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~-~~~~i~niITQSaVI~~L~ 265 (297)
+| ++|.+++|+.+++.+|.+|+++++||||. ++++++|+||..++++.+.
T Consensus 6 dp-vtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~ 56 (126)
T d1zfja4 6 DP-FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD 56 (126)
T ss_dssp SC-CCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC
T ss_pred Cc-eEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc
Confidence 56 48999999999999999999999999996 3578999999999977543
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=98.21 E-value=6.7e-07 Score=69.44 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=51.4
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHH
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~ 114 (297)
..||..+- ..+++.+++++++.+|+++|.++|+...||+|.+ +|++|+|+..||+..+-|+
T Consensus 64 ~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~--------g~lvGiIt~~Dil~~i~ee 124 (127)
T d2ouxa2 64 DTLIADIL---NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD--------DHLLGIVTVDDIIDVIDDE 124 (127)
T ss_dssp TSBHHHHS---BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--------CBEEEEEEHHHHHHHHHHH
T ss_pred cEEhhhhc---cCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCC--------CEEEEEEEHHHHHHHHHHH
Confidence 34555554 3578899999999999999999999999999876 4999999999999865444
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=2e-07 Score=71.75 Aligned_cols=57 Identities=16% Similarity=0.336 Sum_probs=36.9
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+|+++|.+. ++.+++++|+.+++.+|.+++++++||+|. +|++.|+||..+++....
T Consensus 2 ~v~diM~~~----~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~ 58 (122)
T d2yzqa2 2 RVKTIMTQN----PVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD 58 (122)
T ss_dssp BHHHHSEES----CCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-----
T ss_pred CcccccCCC----CEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhc
Confidence 799999875 889999999999999999999999999997 579999999999886543
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=6.8e-07 Score=68.37 Aligned_cols=54 Identities=9% Similarity=0.228 Sum_probs=50.2
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+|+++|.+. |..|.+++|+-+++.+|.+++.+.+||+|. +++++|+||..++++
T Consensus 2 ~v~~~m~~~----~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~ 55 (121)
T d1vr9a3 2 KVKKWVTQD----FPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLD 55 (121)
T ss_dssp BGGGGCBSC----SCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTT
T ss_pred CchhhhcCC----CeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhh
Confidence 689999987 999999999999999999999999999987 469999999999974
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.16 E-value=1.1e-06 Score=69.31 Aligned_cols=54 Identities=15% Similarity=0.363 Sum_probs=49.2
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
|.-++.|.++.|+.+++.+|.+|+++.+||+|. +++++|+||..++++.+.+..
T Consensus 11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~ 64 (153)
T d2ooxe2 11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGD 64 (153)
T ss_dssp CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGC
T ss_pred CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhcccc
Confidence 566899999999999999999999999999997 479999999999999987654
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.13 E-value=1e-06 Score=67.55 Aligned_cols=59 Identities=8% Similarity=0.158 Sum_probs=52.5
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+|+++|.+. +..|.+++|+.+|+.+|.+++++++||+|. +++|++|..++++.+.....
T Consensus 2 ~V~~lM~~~----~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~ 60 (135)
T d3ddja2 2 NIETLMIKN----PPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK 60 (135)
T ss_dssp SGGGTCEES----CCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC-
T ss_pred EeeEEeeCC----CeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccc
Confidence 699999876 778999999999999999999999999984 69999999999998865554
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=98.07 E-value=7.1e-06 Score=64.72 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=54.4
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHH
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a 118 (297)
..++..+- ..+++.+.+++++.+|+++|.++++...||+|.+ +|++|+|+..||+..+.++.+..
T Consensus 64 ~~~v~~im---~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~--------g~lvGiIt~~Dil~~l~~e~~ed 128 (144)
T d2yvxa2 64 RTRVAEIM---NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE--------GRLVGIVTVDDVLDVLEAEATED 128 (144)
T ss_dssp TCBSTTTS---BSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSS--------CBEEEEEEHHHHHHHHHHHHHHH
T ss_pred ccchHHhc---ccCCccCCCCChHHHHHHHHHHcCCCEEEEEeEC--------CEEEEEEEHHHHHHHHHHHhHHH
Confidence 34555444 4578899999999999999999999999999976 48999999999999877776544
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.75 E-value=7e-06 Score=62.89 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=41.2
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
..+++.+..++++.+|.++|.+|+|...||+|.+ ++++|||+..||++
T Consensus 70 ~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~--------~~lvGiiT~~Di~k 117 (120)
T d1jr1a4 70 REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN--------DELVAIIARTDLKK 117 (120)
T ss_dssp TTTSCCEETTCCHHHHHHHTCSCC---CEEEETT--------TEEEEEECHHHHHH
T ss_pred ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCC--------CEEEEEEEHHHhhh
Confidence 3468999999999999999999999999999876 48999999999987
|
| >d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: FliG family: FliG domain: FliG species: Thermotoga maritima [TaxId: 2336]
Probab=84.52 E-value=0.015 Score=46.89 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=50.1
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
.++.+++|+... ++.+.++.+--.+-.+|.+|..+.+|||+.+ ++..|.||..+|.+
T Consensus 135 ~~~~l~~i~~~~----~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e-~~~~G~I~~~Die~ 191 (213)
T d1lkvx_ 135 IQLVLREVDTRD----LALALKGASDELKEKIFKNMSKRAAALLKDE-LEYMGPVRLKDVEE 191 (213)
T ss_dssp HHHHHTTSCHHH----HHHHHTTCCHHHHHHHHTTSCHHHHHHHHHH-HHSCCCCCHHHHHH
T ss_pred HhHHHHHhhhhh----heeehhcCCHHHHHHHHHhCCHHHHHHHHHh-hhhcCCCcHHHHHH
Confidence 467788888777 8888999999999999999999999999984 69999999999744
|
| >d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Class pi GST species: Onchocerca volvulus [TaxId: 6282]
Probab=83.73 E-value=0.33 Score=34.07 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=26.7
Q ss_pred hcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhccCCc
Q 022403 235 KYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKGRD 271 (297)
Q Consensus 235 K~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g~d 271 (297)
++..++|||++.++ .+|||| +|+++|++-.|+|
T Consensus 44 ~~p~g~lPvL~~~~----~~l~qS~AI~~YLa~k~gL~ 77 (77)
T d1tu7a2 44 QFQFGQLPCLYDGD----QQIVQSGAILRHLARKYNLN 77 (77)
T ss_dssp GSTTSCSCEEEETT----EEEESHHHHHHHHHHHTTCS
T ss_pred cCCCCCCCEEEECC----EEEEcHHHHHHHHHHHhCcC
Confidence 45688999999643 579998 8899999988874
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.92 E-value=0.5 Score=36.89 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=50.6
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeE---EEcCCCCCe---eEEeehHHHHHHHhhcc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVP---IIEPGTPDI---KNYITQSAVVQGLEGCK 268 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvP---VVd~~~~~i---~niITQSaVI~~L~~~~ 268 (297)
+-|.+-.|+++++.. |+.+.-+..=-+.-.++.+|+++.+| |+|+.+|++ .|.++....++.|.+..
T Consensus 63 ~v~~d~~V~~~l~~~----fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl 135 (147)
T d2dlxa1 63 DVWSNEAVKNIIREH----FIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFL 135 (147)
T ss_dssp HTTTCHHHHHHHHHT----EEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHhhh----eeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEecccCCCCHHHHHHHHHHHH
Confidence 557889999999888 88887766556888889999998888 889866655 45556666666655544
|