Citrus Sinensis ID: 022406

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MSPTRLSLNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC
ccccccccccccccccEEEEEEcccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHHccccccEEEccccccEEEcccEEEccccccccccHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHcccccEEEcccccEEEEEEcccccccccccccccccccccEEEEEEEEEEccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccc
ccccEEccccHHHHccEEEEEEccccEEEEcccEEEEEccccEEEEEEccccHHHHHHHHHHHcHHHcHcEEEccccccEEEccEEEcccccccccccHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHccccccccccccHEEEEEEEHcccccccccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEEccccccccccccccccEEEEEEEEEcEEEEEccccccccccccccccccHHHHHHHcccccccccEEEcccccccccHHHcccc
MSPTRLSLNFFFLLSFSLLIRKsfsstaiinpskvkqiswkprafvyegfltdlECDHLINLAKSQLKRSAvadnlsgesklsdvrtssgtfipkgkDAIIAGIEDKiatwtflpkengeDIQVLRYehgqkyephydyfsdkvnivrGGHRLATVLMYLSDVakggetvfpnaeqepprrrtpatnddlsecakkgiavkprrgdALLFFSLhtnaipdpvslhsgcpviegekwsatkwIHVDSFDKIVeeggdctdnnaSCERWAALgectknpeymvgsaqlpgfcrrsckvc
MSPTRLSLNFFFLLSFSLLIRKSFSstaiinpskvkqiswkpRAFVYEGFLTDLECDHLINLAKSQLKRSAVAdnlsgesklsdvrtssgtfipkgkdaIIAGIEDKIAtwtflpkenGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGEtvfpnaeqepprrrtpatnddlsecakkgiavkprRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPeymvgsaqlpgfcrrsckvc
MSPTRlslnfffllsfsllirksfssTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC
*****LSLNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKS*************************TFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGG*****************************GIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCR******
**P*R**LNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVA***********VRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDS***************ASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC
MSPTRLSLNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPN****************LSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC
**PTRLSLNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQ******TPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSPTRLSLNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
P54001534 Prolyl 4-hydroxylase subu yes no 0.649 0.361 0.301 2e-24
Q60715534 Prolyl 4-hydroxylase subu yes no 0.649 0.361 0.292 2e-24
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.649 0.361 0.287 4e-24
P13674534 Prolyl 4-hydroxylase subu yes no 0.649 0.361 0.287 4e-24
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.649 0.361 0.287 7e-24
Q20065539 Prolyl 4-hydroxylase subu yes no 0.646 0.356 0.293 3e-23
P16924516 Prolyl 4-hydroxylase subu yes no 0.649 0.374 0.296 8e-23
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.649 0.361 0.294 2e-22
Q10576559 Prolyl 4-hydroxylase subu no no 0.649 0.345 0.278 4e-22
Q6W3E9544 Prolyl 4-hydroxylase subu no no 0.639 0.349 0.307 8e-22
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function desciption
 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 26/219 (11%)

Query: 29  IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTS 88
           I+ P+K +    KPR   +   ++D E + + +LAK +L R+ V D  +G+   +  R S
Sbjct: 322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVS 381

Query: 89  SGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFS----DKV 144
              ++   +D +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D  
Sbjct: 382 KSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAF 441

Query: 145 NIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRR 204
             +  G+R+AT L Y+SDV+ GG TVFP                        G +V P++
Sbjct: 442 RELGTGNRIATWLFYMSDVSAGGATVFPEV----------------------GASVWPKK 479

Query: 205 GDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIH 243
           G A+ +++L  +   D  + H+ CPV+ G KW + KW+H
Sbjct: 480 GTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLH 518
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
255551575297 prolyl 4-hydroxylase alpha subunit, puta 0.966 0.966 0.811 1e-138
363807286297 uncharacterized protein LOC100796794 pre 0.973 0.973 0.788 1e-137
359806348298 uncharacterized protein LOC100783075 pre 0.976 0.973 0.78 1e-135
224102545300 predicted protein [Populus trichocarpa] 0.996 0.986 0.770 1e-135
357447555303 Prolyl 4-hydroxylase alpha subunit-like 0.915 0.897 0.813 1e-134
356546462 839 PREDICTED: uncharacterized protein LOC10 0.915 0.324 0.805 1e-133
357447553301 Prolyl 4-hydroxylase alpha subunit-like 0.912 0.900 0.812 1e-133
215490181294 type 2 proly 4-hydroxylase [Nicotiana ta 0.983 0.993 0.772 1e-132
255641919301 unknown [Glycine max] 0.952 0.940 0.771 1e-131
356555585301 PREDICTED: prolyl 4-hydroxylase subunit 0.952 0.940 0.768 1e-131
>gi|255551575|ref|XP_002516833.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223543921|gb|EEF45447.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/292 (81%), Positives = 262/292 (89%), Gaps = 5/292 (1%)

Query: 10  FFFLLSFSLLIRKSFS----STAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKS 65
           F FLL  SL+  KS S     T+II+PSKVKQ+SWKPRAFVYEGFLTDLECDHLI+LAKS
Sbjct: 7   FVFLLLISLIFHKSSSYPGSPTSIIDPSKVKQVSWKPRAFVYEGFLTDLECDHLISLAKS 66

Query: 66  QLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVL 125
           +LKRSAVADN SG+SKLS+VRTSSG FI KGKD IIAGIE+KI+TWTFLPKENGED+QVL
Sbjct: 67  ELKRSAVADNESGKSKLSEVRTSSGMFIAKGKDPIIAGIEEKISTWTFLPKENGEDLQVL 126

Query: 126 RYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPA 185
           RYEHGQKY+PHYDYF+DK+NI RGGHR+ATVLMYLSDV KGGETVFPNAE EPPRR+   
Sbjct: 127 RYEHGQKYDPHYDYFADKINIARGGHRMATVLMYLSDVVKGGETVFPNAE-EPPRRKATE 185

Query: 186 TNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245
           +++DLSECAKKGI+VKPRRGDALLFFSLH  AIPDP SLH+GCPVIEGEKWSATKWIHVD
Sbjct: 186 SHEDLSECAKKGISVKPRRGDALLFFSLHPTAIPDPNSLHAGCPVIEGEKWSATKWIHVD 245

Query: 246 SFDKIVEEGGDCTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC 297
           SFDK +E GG+CTD N SCERWAALGECT NPEYMVGS +LPG+CRRSCKVC
Sbjct: 246 SFDKNIEAGGNCTDKNESCERWAALGECTNNPEYMVGSPELPGYCRRSCKVC 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363807286|ref|NP_001242363.1| uncharacterized protein LOC100796794 precursor [Glycine max] gi|255641119|gb|ACU20838.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359806348|ref|NP_001241485.1| uncharacterized protein LOC100783075 precursor [Glycine max] gi|255645457|gb|ACU23224.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224102545|ref|XP_002312720.1| predicted protein [Populus trichocarpa] gi|222852540|gb|EEE90087.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357447555|ref|XP_003594053.1| Prolyl 4-hydroxylase alpha subunit-like protein [Medicago truncatula] gi|355483101|gb|AES64304.1| Prolyl 4-hydroxylase alpha subunit-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356546462|ref|XP_003541645.1| PREDICTED: uncharacterized protein LOC100818794 [Glycine max] Back     alignment and taxonomy information
>gi|357447553|ref|XP_003594052.1| Prolyl 4-hydroxylase alpha subunit-like protein [Medicago truncatula] gi|355483100|gb|AES64303.1| Prolyl 4-hydroxylase alpha subunit-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|215490181|dbj|BAG86624.1| type 2 proly 4-hydroxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|255641919|gb|ACU21228.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356555585|ref|XP_003546111.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.909 0.906 0.778 9.8e-119
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.909 0.903 0.767 3.1e-115
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.878 0.906 0.605 2.3e-87
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.696 0.721 0.585 2.6e-63
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.700 0.717 0.563 7.1e-61
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.707 0.721 0.558 3.1e-60
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.720 0.740 0.557 2.7e-59
TAIR|locus:2131884291 AT4G25600 [Arabidopsis thalian 0.629 0.642 0.43 2e-51
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.663 0.696 0.471 6.4e-44
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.663 0.684 0.435 3.4e-38
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 211/271 (77%), Positives = 241/271 (88%)

Query:    27 TAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVR 86
             +  +NPSKVKQ+S KPRAFVYEGFLT+LECDH+++LAK+ LKRSAVADN SGESK S+VR
Sbjct:    29 SVFVNPSKVKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVADNDSGESKFSEVR 88

Query:    87 TSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI 146
             TSSGTFI KGKD I++GIEDKI+TWTFLPKENGEDIQVLRYEHGQKY+ H+DYF DKVNI
Sbjct:    89 TSSGTFISKGKDPIVSGIEDKISTWTFLPKENGEDIQVLRYEHGQKYDAHFDYFHDKVNI 148

Query:   147 VRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGD 206
             VRGGHR+AT+LMYLS+V KGGETVFP+AE  P RR      +DLS+CAK+GIAVKPR+GD
Sbjct:   149 VRGGHRMATILMYLSNVTKGGETVFPDAEI-PSRRVLSENKEDLSDCAKRGIAVKPRKGD 207

Query:   207 ALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVEEGGDCTDNNASCER 266
             ALLFF+LH +AIPDP+SLH GCPVIEGEKWSATKWIHVDSFD+IV   G+CTD N SCER
Sbjct:   208 ALLFFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIHVDSFDRIVTPSGNCTDMNESCER 267

Query:   267 WAALGECTKNPEYMVGSAQLPGFCRRSCKVC 297
             WA LGECTKNPEYMVG+ +LPG+CRRSCK C
Sbjct:   268 WAVLGECTKNPEYMVGTTELPGYCRRSCKAC 298
GO:0005506 "iron ion binding" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131884 AT4G25600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 1e-132
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-46
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 2e-09
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-08
smart0025433 smart00254, ShKT, ShK toxin domain 2e-04
pfam0154937 pfam01549, ShK, ShK domain-like 9e-04
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  376 bits (966), Expect = e-132
 Identities = 166/272 (61%), Positives = 208/272 (76%), Gaps = 11/272 (4%)

Query: 31  NPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSG 90
           N S+VK +SW+PR FVY+GFL+D ECDHL+ LAK +++RS VADN SG+S +S+VRTSSG
Sbjct: 43  NASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSG 102

Query: 91  TFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGG 150
            F+ K +D +++ IE++IA WTFLP+EN E+IQ+LRYEHGQKYEPH+DYF DK+N   GG
Sbjct: 103 MFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGG 162

Query: 151 HRLATVLMYLSDVAKGGETVFPNAE--QEPPRRRTPATNDDLSECAKKGIAVKPRRGDAL 208
           HR ATVLMYLS V KGGETVFPNAE  +  P+      +D  SECA KG+AVKP +GDA+
Sbjct: 163 HRYATVLMYLSTVDKGGETVFPNAEGWENQPK------DDTFSECAHKGLAVKPVKGDAV 216

Query: 209 LFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDK---IVEEGGDCTDNNASCE 265
           LFFSLH + +PDP+SLH  CPVIEGEKWSA KWIH+ S++    + ++   C D +A C 
Sbjct: 217 LFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVVPKDTEGCADKSAHCA 276

Query: 266 RWAALGECTKNPEYMVGSAQLPGFCRRSCKVC 297
            WAA GEC KNP YMVG+   PG CR+SC VC
Sbjct: 277 EWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC 308

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|214586 smart00254, ShKT, ShK toxin domain Back     alignment and domain information
>gnl|CDD|216565 pfam01549, ShK, ShK domain-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.96
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.75
PHA02813 354 hypothetical protein; Provisional 99.74
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.65
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.64
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 99.15
smart0025433 ShKT ShK toxin domain. ShK toxin domain 99.08
PF0154938 ShK: ShK domain-like; InterPro: IPR003582 The ShK 98.79
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.63
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.58
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.54
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.42
PHA02866 333 Hypothetical protein; Provisional 98.28
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.06
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.76
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.64
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.63
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.35
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.11
TIGR02466201 conserved hypothetical protein. This family consis 96.79
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.78
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.48
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 96.34
PHA02923 315 hypothetical protein; Provisional 95.67
KOG3200224 consensus Uncharacterized conserved protein [Funct 94.86
COG3826236 Uncharacterized protein conserved in bacteria [Fun 93.34
KOG3371 243 consensus Uncharacterized conserved protein [Funct 93.2
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 86.89
PF06822266 DUF1235: Protein of unknown function (DUF1235); In 86.38
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 86.34
PLN02485329 oxidoreductase 86.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.95
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.79
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.71
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.21
KOG4176323 consensus Uncharacterized conserved protein [Funct 82.91
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 81.75
PLN02216357 protein SRG1 81.06
PLN02904357 oxidoreductase 80.89
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.6e-80  Score=568.71  Aligned_cols=269  Identities=61%  Similarity=1.126  Sum_probs=247.3

Q ss_pred             CCccccCCceeEEeccCCcEEEEcCCCCHHHHHHHHHHHhcccccceeeeCCCCcccccccccccccccCCCchHHHHHH
Q 022406           25 SSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGI  104 (297)
Q Consensus        25 ~~~~~~~p~kve~ls~~P~i~~i~nfLs~~Ec~~li~~a~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i  104 (297)
                      .++..++|.|||+||++|+||+|+||||++||++||+++++++++|+++++.+|+...+++|+|.++|++..+++++++|
T Consensus        37 ~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I  116 (310)
T PLN00052         37 AAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRI  116 (310)
T ss_pred             cCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHH
Confidence            34556799999999999999999999999999999999999999999987766777788899999999998779999999


Q ss_pred             HHHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCC
Q 022406          105 EDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTP  184 (297)
Q Consensus       105 ~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~  184 (297)
                      ++||++++++|.++.|++||+||++||+|++|+|++.+..+...+++|++|||+||||+++||||+||+.+....+    
T Consensus       117 ~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~----  192 (310)
T PLN00052        117 EERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQ----  192 (310)
T ss_pred             HHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccccccc----
Confidence            9999999999999999999999999999999999987644344578999999999999999999999997543332    


Q ss_pred             CCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCcccccC---CccccccCc
Q 022406          185 ATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVE---EGGDCTDNN  261 (297)
Q Consensus       185 ~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~~~~---~~~~C~d~~  261 (297)
                      .+++.+++|++.+++|+|++|+||||+|+++||+.|+.++|+||||++|+||++|+|||.++++.|..   .+..|.|.+
T Consensus       193 ~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~~~~~~~~~~~C~d~~  272 (310)
T PLN00052        193 PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVVPKDTEGCADKS  272 (310)
T ss_pred             ccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccCCCcCCccCCCCcCCc
Confidence            45678999999999999999999999999999999999999999999999999999999999976643   467999999


Q ss_pred             cccHhHhhcCccccCcccccccccCcchhhhhcCCC
Q 022406          262 ASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC  297 (297)
Q Consensus       262 ~~C~~wa~~geC~~n~~~m~~~~~~~~~C~~sC~~C  297 (297)
                      ++|+.||+.|||++||.||+|+++++++|+||||.|
T Consensus       273 ~~C~~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C  308 (310)
T PLN00052        273 AHCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC  308 (310)
T ss_pred             ccChhHhhCCccccChHhhcCCCCCCChhhcccccc
Confidence            999999999999999999999999999999999999

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>smart00254 ShKT ShK toxin domain Back     alignment and domain information
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone) Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3371 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 1e-62
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-62
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 1e-62
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 3e-60
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 2e-30
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 153/213 (71%), Gaps = 9/213 (4%)
Query: 34  KVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFI 93
           +V  +SW PRAF+ + FL+D ECD+++  A+ ++ +S+V DN SG+S  S++RTS+GT+ 
Sbjct: 21  EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 80
Query: 94  PKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--VRGGH 151
            KG+D++I+ IE ++A  T +P EN E +QVL Y  GQKYEPHYDYF D VN     GG 
Sbjct: 81  AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 152 RLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFF 211
           R+ T+LMYL+ V +GGETV PNAEQ+        T D  SECAK+G+AVKP +GDAL+F+
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQK-------VTGDGWSECAKRGLAVKPIKGDALMFY 193
Query: 212 SLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244
           SL  +   DP SLH  CP ++G+KWSATKWIHV
Sbjct: 194 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 2e-99
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 3e-87
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 6e-08
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  290 bits (743), Expect = 2e-99
 Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 9/219 (4%)

Query: 32  PSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGT 91
             +V  +SW PRAF+ + FL+D ECD+++  A+ ++ +S+V DN SG+S  S++RTS+GT
Sbjct: 10  RGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGT 69

Query: 92  FIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIV--RG 149
           +  KG+D++I+ IE ++A  T +P EN E +QVL Y  GQKYEPHYDYF D VN     G
Sbjct: 70  WFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHG 129

Query: 150 GHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALL 209
           G R+ T+LMYL+ V +GGETV PNAEQ         T D  SECAK+G+AVKP +GDAL+
Sbjct: 130 GQRVVTMLMYLTTVEEGGETVLPNAEQ-------KVTGDGWSECAKRGLAVKPIKGDALM 182

Query: 210 FFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFD 248
           F+SL  +   DP SLH  CP ++G+KWSATKWIHV    
Sbjct: 183 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG 221
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.91
2k72_A37 Matrix metalloproteinase-23; toxin, metalloproteas 99.51
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.25
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.58
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.91
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.85
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.73
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.24
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.2
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.15
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 96.82
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.81
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.15
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 95.8
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 95.36
2lg4_A40 Aurelin; antimicrobial protein; NMR {Aurelia aurit 90.24
1bei_A35 SHK-DNP22, potassium channel toxin SHK; potassium 88.98
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 85.46
1bgk_A37 BGK; neurotoxin, potassium channel inhibitor; NMR 84.61
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=2.3e-54  Score=383.67  Aligned_cols=217  Identities=52%  Similarity=0.923  Sum_probs=193.8

Q ss_pred             CccccCCceeEEeccCCcEEEEcCCCCHHHHHHHHHHHhcccccceeeeCCCCcccccccccccccccCCCchHHHHHHH
Q 022406           26 STAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIE  105 (297)
Q Consensus        26 ~~~~~~p~kve~ls~~P~i~~i~nfLs~~Ec~~li~~a~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i~  105 (297)
                      +-.-+.|.|||+||++|+|++|+||||++||++||+++++.+++|+++++.+|..+.+++|+|.++|++..+++++++|+
T Consensus         4 ~~~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~   83 (224)
T 2jig_A            4 ELKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIE   83 (224)
T ss_dssp             ---CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHH
T ss_pred             CcccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHH
Confidence            33446799999999999999999999999999999999999999999877667667788999999999976789999999


Q ss_pred             HHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccc--cCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCC
Q 022406          106 DKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--VRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRT  183 (297)
Q Consensus       106 ~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~  183 (297)
                      +||.+++++|....|++||+||++|++|++|+|++....+.  ..+++|++|+|+||||+++||||+||.....      
T Consensus        84 ~ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~------  157 (224)
T 2jig_A           84 KRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQK------  157 (224)
T ss_dssp             HHHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSC------
T ss_pred             HHHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcccc------
Confidence            99999999999999999999999999999999998653211  2357999999999999999999999986421      


Q ss_pred             CCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCccc
Q 022406          184 PATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDK  249 (297)
Q Consensus       184 ~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~  249 (297)
                       .+++.+++|.+.+++|+|++|+||||+|+++||+.|++++|+||||++|+||++++||+.++++.
T Consensus       158 -~~~~~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~~  222 (224)
T 2jig_A          158 -VTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIGG  222 (224)
T ss_dssp             -CCSTTSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCCC
T ss_pred             -cccccccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcCC
Confidence             34677899998899999999999999999999999999999999999999999999999998853
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2k72_A Matrix metalloproteinase-23; toxin, metalloprotease, MMP23, potassium channel, cleavage on PAIR of basic residues, glycoprotein, hydrolase; NMR {Synthetic} Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita} Back     alignment and structure
>1bei_A SHK-DNP22, potassium channel toxin SHK; potassium channel inhibitor, SEA anemone, immunosuppressant neurotoxin; HET: DNP; NMR {Stichodactyla helianthus} SCOP: g.19.1.1 PDB: 1roo_A 2k9e_A* 1c2u_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1bgk_A BGK; neurotoxin, potassium channel inhibitor; NMR {Bunodosoma granulifera} SCOP: g.19.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.82
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.8
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.87
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.7
d1rooa_35 Sea anemone toxin k {Sun anemone (Stichodactyla he 85.52
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 83.75
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 81.46
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00011  Score=63.66  Aligned_cols=98  Identities=13%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             cccccccccCcccccCCCceeEEEEEeecCCC-CCccccc-CCCCCCCCCCCCCCCC--------Ccchhh--hcCCeeE
Q 022406          133 YEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA-KGGETVF-PNAEQEPPRRRTPATN--------DDLSEC--AKKGIAV  200 (297)
Q Consensus       133 y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~~~~~~~~~--------~~~~~C--~~~~~~V  200 (297)
                      ..||.|.....   .......+|+.|+|.|+. +.|.+.| |.+.............        ....+-  ....+.+
T Consensus       130 ~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (296)
T d2a1xa1         130 HPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL  206 (296)
T ss_dssp             -CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEE
T ss_pred             CCcccCccccc---cCCccccceeeEeeeeccccccccceecccccccccccccccccCCcccccccccchhhccceEEe
Confidence            45899985432   123456889999999985 5566654 5532111000000000        000000  0123567


Q ss_pred             ecCcccEEEeeecCCCCCCCCCccccCCccc-ccceEEEEEEE
Q 022406          201 KPRRGDALLFFSLHTNAIPDPVSLHSGCPVI-EGEKWSATKWI  242 (297)
Q Consensus       201 ~P~~G~allF~n~~~~g~~D~~~lH~g~PV~-~G~K~i~~~Wi  242 (297)
                      .-++|++|||.         ..++|++.|-. ...|++++.-+
T Consensus       207 ~~k~Gdvli~~---------~~l~Hgs~~N~S~~~R~~l~~~y  240 (296)
T d2a1xa1         207 VMEKGDTVFFH---------PLLIHGSGQNKTQGFRKAISCHF  240 (296)
T ss_dssp             CBCTTCEEEEC---------TTCCEEECCBCSSSCEEEEEEEE
T ss_pred             eecCCcEEEEC---------CCeeecCCCCCCcCceEEEEEEE
Confidence            77899999994         58999999966 45788876654
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rooa_ g.19.1.1 (A:) Sea anemone toxin k {Sun anemone (Stichodactyla helianthus), SHK [TaxId: 6123]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure