Citrus Sinensis ID: 022429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHccHHHHHHHcccccccHHHHccccHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccEEEcccccccccHHHHHHHHHHHHcccccEEEEEEEEEEEEEccEEEEEEEEEEEcccccEEEEEEEEEEccEEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEccEEEEEEEEEEEcccccEEEEEEEEEccccEEEEEEccccEEcccccccccccc
Coil and Loop (DISEMBL)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTArstkstkqsdgatsatsatarkkscnctcscngpaaASAAEREMLEVGRHAATAATAVVAergsgasmmEQLVPEITTHalsyldypslcrLSMTNSLMRKAANDDNAWKALYHkdftleqdsvipvngWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCihasgelfsgYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTyididtgpfnmtnvfefhngqwymvhhhssvmlvdgEVEQQVVHG
Flexible Loop (DISEMBL)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTArstkstkqsdgatsatsatarkkscnctCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG
Low Complexity Region (SEG)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGatsatsataRKKSCNCTCSCNGPAAASAAEREMLEVGRHaataatavvaERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG
Disordered region (IsUnstruct)
**IITSTFFSSQFVIAAIFTIFSLLLAVRT***************************CTCS*******************************************PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDG*********
Disordered Region (DISOPRED)
****TSTFFSSQFVIAAIFTIFSLLLAVRT*************************CNCTCSCNGPAAASAA*************************************T*******Y********************NAWKALYHK*****************YYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSV**************
Disordered Region (DISEMBL)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRT**************************NCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG
Disordered Region (DISPRO)
*EIITSTFFSSQFVIAAIFTIFSLLLAVRTARS**********************C*C***CN**********************************SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVD**********
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTCSCNGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q93YV9	231	F-box protein SKIP8 OS=Ar	yes	no	0.720	0.926	0.760	1e-100
Q9T0B0	122	Probable F-box protein At	no	no	0.387	0.942	0.608	2e-38

>sp|Q93YV9|SKIP8_ARATH F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 186/217 (85%), Gaps = 3/217 (1%)

Query: 79  GRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN 138
           G    T  T+ VA+   G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN
Sbjct: 16  GGERTTVTTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDN 75

Query: 139 AWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNAD 198
           AWKALYHKDFTLEQD + PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+D
Sbjct: 76  AWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSD 135

Query: 199 YVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDT 258
           YVKCIHASGELFSGYN VIQSWQ+ FNWEQG DFQV  VR R+LTD+AWVTMK Y+++D 
Sbjct: 136 YVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDG 195

Query: 259 GPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVV 295
           GPF +TNVFEFHNG+W+MVHHHSSVML+D   +QQVV
Sbjct: 196 GPFLITNVFEFHNGRWHMVHHHSSVMLID---DQQVV 229

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0B0|FB335_ARATH Probable F-box protein At4g23960 OS=Arabidopsis thaliana GN=At4g23960 PE=4 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 90/115 (78%)

Query: 99  MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +   PV
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGY 213
           NGWKA++A T+ V+ VN +FF+I+  RSLP M+  WLN+DYVKC + SGELF+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
449462569	313	PREDICTED: F-box protein SKIP8-like [Cuc	1.0	0.948	0.658	1e-118
225426290	307	PREDICTED: F-box protein SKIP8 [Vitis vi	0.996	0.964	0.668	1e-113
297742355	325	unnamed protein product [Vitis vinifera]	0.959	0.876	0.683	1e-113
356511437	286	PREDICTED: F-box protein SKIP8-like [Gly	0.952	0.989	0.646	1e-108
255537841	302	conserved hypothetical protein [Ricinus	0.700	0.688	0.836	1e-108
388495556	284	unknown [Medicago truncatula]	0.942	0.985	0.641	1e-108
388492372	284	unknown [Medicago truncatula]	0.946	0.989	0.65	1e-107
356523598	284	PREDICTED: F-box protein SKIP8-like [Gly	0.949	0.992	0.635	1e-106
224072218	301	f-box family protein [Populus trichocarp	1.0	0.986	0.651	1e-105
224058184	210	predicted protein [Populus trichocarpa]	0.703	0.995	0.823	1e-103

>gi|449462569|ref|XP_004149013.1| PREDICTED: F-box protein SKIP8-like [Cucumis sativus] gi|449506211|ref|XP_004162683.1| PREDICTED: F-box protein SKIP8-like [Cucumis sativus]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/313 (65%), Positives = 242/313 (77%), Gaps = 16/313 (5%)

Query: 1   MEIITST---FFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCN 57
           MEI++S      S  F IAAI T    LLA+  A    S        +  S +   ++CN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 58  CTCSCNG--------PAA--ASAAEREMLEVGRHAATA---ATAVVAERGSGASMMEQLV 104
           CTCS NG        P A   S+    M  +   A      A  VV ER +GASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 105 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAY 164
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD+V P+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAF 224
           YAATR ++N+NA+F+NIIR+RSL AMSRFWLNADYVKCIHASGE FSGYN+V+QSWQ+AF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 225 NWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVM 284
           NWEQG++FQV+DVRARVLTD+AWV+MKTY+D+DTGPFN+TN++EFHNG+WYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 285 LVDGEVEQQVVHG 297
           L+ GE+EQQ+VHG
Sbjct: 301 LIVGEMEQQMVHG 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426290|ref|XP_002265246.1| PREDICTED: F-box protein SKIP8 [Vitis vinifera]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/308 (66%), Positives = 247/308 (80%), Gaps = 12/308 (3%)

Query: 1   MEIITS---TFFSSQFVIAAIFTIFSL---LLAVRTARSTKSTK-QSDGATSATSATARK 53
           MEI +S    F   QF++A + +   L   L AVR + ++   K +S  +    S  + +
Sbjct: 1   MEIASSFAGDFSFLQFLVALVVSGLCLVCALFAVRFSPASFGRKSRSVESDGGGSGGSLR 60

Query: 54  KSCNCTCSC----NGPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITT 109
           K+C+C C C    +GPA A+AA    L  G         VV+ER +GASMMEQLVPEITT
Sbjct: 61  KACSCDCLCRSAESGPATATAAAAAYLNGGAEEMLDRALVVSERQTGASMMEQLVPEITT 120

Query: 110 HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATR 169
           HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATR
Sbjct: 121 HALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATR 180

Query: 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQG 229
           A+VN+NAEFFNIIRERS+ +MSR W NADYVKC+HASGELF+GYN+VI+SWQ+AFNW+QG
Sbjct: 181 AIVNINAEFFNIIRERSITSMSRLWFNADYVKCVHASGELFTGYNAVIESWQLAFNWDQG 240

Query: 230 VDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGE 289
           VDFQV+DVRARVLTD+AWVTMKT++D++TGPFN+TNVFEFHNG+W+MVHHHSSV L+DGE
Sbjct: 241 VDFQVRDVRARVLTDMAWVTMKTFVDMETGPFNVTNVFEFHNGRWFMVHHHSSV-LIDGE 299

Query: 290 VEQQVVHG 297
           V+QQ+V+G
Sbjct: 300 VDQQIVNG 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742355|emb|CBI34504.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/294 (68%), Positives = 241/294 (81%), Gaps = 9/294 (3%)

Query: 12  QFVIAAIFTIFSL---LLAVRTARSTKSTK-QSDGATSATSATARKKSCNCTCSC----N 63
           QF++A + +   L   L AVR + ++   K +S  +    S  + +K+C+C C C    +
Sbjct: 33  QFLVALVVSGLCLVCALFAVRFSPASFGRKSRSVESDGGGSGGSLRKACSCDCLCRSAES 92

Query: 64  GPAAASAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYPSLCRL 123
           GPA A+AA    L  G         VV+ER +GASMMEQLVPEITTHALSYLDYPSLCRL
Sbjct: 93  GPATATAAAAAYLNGGAEEMLDRALVVSERQTGASMMEQLVPEITTHALSYLDYPSLCRL 152

Query: 124 SMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIR 183
           SMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+VN+NAEFFNIIR
Sbjct: 153 SMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNINAEFFNIIR 212

Query: 184 ERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT 243
           ERS+ +MSR W NADYVKC+HASGELF+GYN+VI+SWQ+AFNW+QGVDFQV+DVRARVLT
Sbjct: 213 ERSITSMSRLWFNADYVKCVHASGELFTGYNAVIESWQLAFNWDQGVDFQVRDVRARVLT 272

Query: 244 DIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297
           D+AWVTMKT++D++TGPFN+TNVFEFHNG+W+MVHHHSSV L+DGEV+QQ+V+G
Sbjct: 273 DMAWVTMKTFVDMETGPFNVTNVFEFHNGRWFMVHHHSSV-LIDGEVDQQIVNG 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511437|ref|XP_003524433.1| PREDICTED: F-box protein SKIP8-like [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/300 (64%), Positives = 231/300 (77%), Gaps = 17/300 (5%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAV-RTARSTKSTKQSDGATSATSATARKKSCNCT 59
           MEI +    S  F++A   T    L A+    RS+ S  +            RK  C+C 
Sbjct: 1   MEIFS--VLSEPFLVALAVTALCFLFALFALLRSSFSLPRR-------FTPPRKHHCDCA 51

Query: 60  CSCNGPAAA--SAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDY 117
            + +  A    +    EMLE    +   A AV+ ER +G+SMME+LVPEITTHALSYLDY
Sbjct: 52  SNSDAGAVPYLNGGCTEMLEP---SPVPAPAVLTERRTGSSMMEELVPEITTHALSYLDY 108

Query: 118 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAE 177
           PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+VN+N E
Sbjct: 109 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVTPTNGWKAYYAATRAIVNINTE 168

Query: 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDV 237
           FFNI+R++SL AMSRFWLNADYVKCIHASGELFSGYN+V+QSWQ+AFNWEQG++ QVQDV
Sbjct: 169 FFNIVRDKSLQAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLAFNWEQGLNTQVQDV 228

Query: 238 RARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297
           RAR+LTD+AWVTMKTY+D+DTGPFN+TN++EFHNG+WYMVHHHS VM  +G+V+  +VHG
Sbjct: 229 RARILTDMAWVTMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSCVM--NGDVDLMIVHG 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537841|ref|XP_002509987.1| conserved hypothetical protein [Ricinus communis] gi|223549886|gb|EEF51374.1| conserved hypothetical protein [Ricinus communis]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 174/208 (83%), Positives = 197/208 (94%)

Query: 90  VAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 149
           V +R +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT
Sbjct: 95  VVDRQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT 154

Query: 150 LEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL 209
           LEQD+V PVNGWKAYYA+TRA+VN N EFFN+I++RSL AMSR WLNADYVKCIHASGEL
Sbjct: 155 LEQDTVTPVNGWKAYYASTRAIVNANTEFFNVIKDRSLQAMSRIWLNADYVKCIHASGEL 214

Query: 210 FSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEF 269
           FSGYN+V+QSWQ+AFNWEQG++FQV+DVRARVLTD+AWVTMKTY D+DTGPF +TN+FEF
Sbjct: 215 FSGYNAVMQSWQLAFNWEQGLEFQVRDVRARVLTDMAWVTMKTYFDMDTGPFTVTNIFEF 274

Query: 270 HNGQWYMVHHHSSVMLVDGEVEQQVVHG 297
           HN +WYMVHHHSSVML+DG+V+QQ+VH 
Sbjct: 275 HNDRWYMVHHHSSVMLIDGDVDQQIVHA 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495556|gb|AFK35844.1| unknown [Medicago truncatula]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/301 (64%), Positives = 232/301 (77%), Gaps = 21/301 (6%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC 60
           M+I ++  FS  F++A   T     +A+ +   T S  +          T   K CNC  
Sbjct: 1   MDIFSN--FSQPFLLAVTVTALCFFIALFSFFRTFSLSRR--------FTPSTKHCNCAS 50

Query: 61  SCNGPAAA----SAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLD 116
           S +   A     +    +M E+     +    V+A+R +G+SMME+LVPEITTHALSYLD
Sbjct: 51  SDSDSDAVVPYLNGGFSQMTEI-----SPPPVVLADRRTGSSMMEELVPEITTHALSYLD 105

Query: 117 YPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNA 176
           YPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+V VN 
Sbjct: 106 YPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVRPSNGWKAYYAATRAIVIVNT 165

Query: 177 EFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQD 236
           EFFNI+R++S+ AMSRFWLNADYVKC+HASGELFSGYN V+QSWQ+ FNW+QG++FQV+D
Sbjct: 166 EFFNILRDKSISAMSRFWLNADYVKCVHASGELFSGYNGVMQSWQLVFNWDQGLNFQVRD 225

Query: 237 VRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVH 296
           VRARVLTD+AWVTMKTY+D+DTGPFN+TNVFEFHNG+WYMVHHHSSVM  +G+VEQQ+VH
Sbjct: 226 VRARVLTDMAWVTMKTYVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVM--NGDVEQQIVH 283

Query: 297 G 297
           G
Sbjct: 284 G 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492372|gb|AFK34252.1| unknown [Medicago truncatula]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/300 (65%), Positives = 230/300 (76%), Gaps = 19/300 (6%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC 60
           M+I ++  FS  F++A   T     +A+ +   T S  +          T   K CNC  
Sbjct: 1   MDIFSN--FSQPFLLAVTVTALCFFIALFSFFRTFSLSRR--------FTPSTKHCNCAS 50

Query: 61  SCNGPAAASAAEREMLEVGRHAAT---AATAVVAERGSGASMMEQLVPEITTHALSYLDY 117
           S     + S A    L  G    T       V+A+R +G+SMME+LVPEITTHALSYLDY
Sbjct: 51  S----DSNSDAVVPYLNGGFSQTTEISPPPVVLADRRTGSSMMEELVPEITTHALSYLDY 106

Query: 118 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAE 177
           PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV P NGWKAYYAATRA+V VN E
Sbjct: 107 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVRPSNGWKAYYAATRAIVIVNTE 166

Query: 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDV 237
           FFNI+R++S+ AMSRFWLNADYVKC+HASGELFSGYN V+QSWQ+ FNW+QG++FQV+DV
Sbjct: 167 FFNILRDKSISAMSRFWLNADYVKCVHASGELFSGYNGVMQSWQLVFNWDQGLNFQVRDV 226

Query: 238 RARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297
           RARVLTD+AWVTMKTY+D+DTGPFN+TNVFEFHNG+WYMVHHHSSVM  +G+VEQQ+VHG
Sbjct: 227 RARVLTDMAWVTMKTYVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVM--NGDVEQQIVHG 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523598|ref|XP_003530424.1| PREDICTED: F-box protein SKIP8-like [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/299 (63%), Positives = 226/299 (75%), Gaps = 17/299 (5%)

Query: 1   MEIITSTFFSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCTC 60
           MEI +    S  F++A   T    L A+       S  +S  +        RK  C+CT 
Sbjct: 1   MEIFS--VLSEPFLVALAVTALCFLFALF------SLLRSSFSLPRRFTPPRKHHCDCTS 52

Query: 61  SCNGPAAA--SAAEREMLEVGRHAATAATAVVAERGSGASMMEQLVPEITTHALSYLDYP 118
           + +  A    +    EMLE    +   A AV+ ER  G+SMME+LVPEITTHALSYLDYP
Sbjct: 53  NSDAAAVPYLNGGRTEMLEP---SPVPAPAVLTERRMGSSMMEELVPEITTHALSYLDYP 109

Query: 119 SLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAEF 178
           SLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDS+ P NGWKAYYAATRA+VN+N EF
Sbjct: 110 SLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSITPTNGWKAYYAATRAIVNINTEF 169

Query: 179 FNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVR 238
           FNI+R++SL AMS FWLNADYVKCIHASG  FSGYN+V+Q WQ+ FNWEQG++FQV+DV 
Sbjct: 170 FNIVRDKSLQAMSHFWLNADYVKCIHASG-FFSGYNAVMQGWQLVFNWEQGLNFQVRDVC 228

Query: 239 ARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297
           ARVLTD+AWVTMKTY+D+DTGPFN+TN++EFHNG+WYMVHHHSS   VDG+V+ Q+VHG
Sbjct: 229 ARVLTDMAWVTMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSS---VDGDVDHQIVHG 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072218|ref|XP_002303658.1| f-box family protein [Populus trichocarpa] gi|222841090|gb|EEE78637.1| f-box family protein [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/301 (65%), Positives = 230/301 (76%), Gaps = 4/301 (1%)

Query: 1   MEIITSTF-FSSQFVIAAIFTIFSLLLAVRTARSTKSTKQSDGATSATSATARKKSCNCT 59
           MEI    F  S  F+IA+  T+ SL LA+ T RS     +    +S  +A+  K      
Sbjct: 1   MEITAFNFTLSESFLIASSLTLLSLSLALLTLRSKSPKSKLTVHSSTPAASTSKTRTCRC 60

Query: 60  CSCNGPAAASAAEREMLEVGRH--AATAATAVVAERGSGASMMEQLVPEITTHALSYLDY 117
           C        S   ++ +  G++     AA  +V ++ +GASMMEQLVPEITTHALSYLDY
Sbjct: 61  CCSCIGEIGSDNSKDSVTAGKYVNGVGAAEDMVVDKQTGASMMEQLVPEITTHALSYLDY 120

Query: 118 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRAVVNVNAE 177
           PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ SV PV GWKAYYA TRA+VNVN E
Sbjct: 121 PSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQGSVTPVIGWKAYYAVTRAIVNVNTE 180

Query: 178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDV 237
           FFNIIRERSL AMS+ WLN+DYVKC HASGE FSGYN+VIQSWQ AFNWEQG+D QV+DV
Sbjct: 181 FFNIIRERSLQAMSQLWLNSDYVKCTHASGENFSGYNAVIQSWQFAFNWEQGLDLQVRDV 240

Query: 238 RARVLTDIAWVTMKTY-IDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVVH 296
           RARVLTD+AWVTMKTY +++D GPFN+TNVFEFH+G+WYMVHHHSSVM++D EV+QQ+VH
Sbjct: 241 RARVLTDMAWVTMKTYVVEMDNGPFNVTNVFEFHDGRWYMVHHHSSVMIIDAEVDQQIVH 300

Query: 297 G 297
            
Sbjct: 301 A 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058184|ref|XP_002299461.1| predicted protein [Populus trichocarpa] gi|222846719|gb|EEE84266.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 195/210 (92%), Gaps = 1/210 (0%)

Query: 89  VVAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148
           +V E+ +GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF
Sbjct: 1   MVVEKQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 60

Query: 149 TLEQDSVIPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE 208
           TLEQDSV PVNGWKAYYAATRA+VNVN EFFNIIRERSL AMS+ WL+ADYVKC HASGE
Sbjct: 61  TLEQDSVTPVNGWKAYYAATRAIVNVNTEFFNIIRERSLQAMSQLWLHADYVKCTHASGE 120

Query: 209 LFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTY-IDIDTGPFNMTNVF 267
             SGYN+VIQSWQ AFNWEQG+DFQV+DVRARVLTD+AWVTMK Y +++D GPFN+TNVF
Sbjct: 121 NLSGYNAVIQSWQFAFNWEQGLDFQVRDVRARVLTDMAWVTMKMYVVEMDNGPFNVTNVF 180

Query: 268 EFHNGQWYMVHHHSSVMLVDGEVEQQVVHG 297
           EFHNG+W++VHHH SVM++DGEV+QQ++H 
Sbjct: 181 EFHNGRWHLVHHHCSVMVLDGEVDQQIMHA 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:505006436	231	AT4G10925 "AT4G10925" [Arabido	0.670	0.861	0.796	1.1e-89
TAIR|locus:2138166	122	AT4G23960 "AT4G23960" [Arabido	0.387	0.942	0.608	5.7e-36

TAIR|locus:505006436 AT4G10925 "AT4G10925" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 160/201 (79%), Positives = 179/201 (89%)

Query:    96 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSV 155
             G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct:    33 GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query:   156 IPVNGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNS 215
              PVNGWK YYA TRA+++VN EFF IIR+R+L AM+R WLN+DYVKCIHASGELFSGYN 
Sbjct:    93 TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNE 152

Query:   216 VIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWY 275
             VIQSWQ+ FNWEQG DFQV  VR R+LTD+AWVTMK Y+++D GPF +TNVFEFHNG+W+
Sbjct:   153 VIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWH 212

Query:   276 MVHHHSSVMLVDGEVEQQVVH 296
             MVHHHSSVML+D +  Q VVH
Sbjct:   213 MVHHHSSVMLIDDQ--QVVVH 231

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2138166 AT4G23960 "AT4G23960" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 70/115 (60%), Positives = 90/115 (78%)

Query:    99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPV 158
             M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +   PV
Sbjct:     1 MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query:   159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGY 213
             NGWKA++A T+ V+ VN +FF+I+  RSLP M+  WLN+DYVKC + SGELF+GY
Sbjct:    61 NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.131   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      297       278   0.00081  115 3  11 22  0.44    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.80u 0.11s 19.91t   Elapsed:  00:00:01
  Total cpu time:  19.80u 0.11s 19.91t   Elapsed:  00:00:01
  Start:  Thu May  9 22:30:13 2013   End:  Thu May  9 22:30:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YV9	SKIP8_ARATH	No assigned EC number	0.7603	0.7205	0.9264	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
pfam13474	121	pfam13474, SnoaL_3, SnoaL-like domain	6e-20
pfam12937	47	pfam12937, F-box-like, F-box-like	5e-06
pfam00646	48	pfam00646, F-box, F-box domain	0.003

>gnl|CDD|222158 pfam13474, SnoaL_3, SnoaL-like domain

 Score = 83.2 bits (206), Expect = 6e-20
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 9/121 (7%)

Query: 171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH-ASGELFSGYNSVIQSWQIAFNWEQG 229
           +  +   +     E  L A    +  AD V  I   + EL+ G  +V    +  F+  + 
Sbjct: 1   IEALLDAWHEAAAEGDLDAYFALF--ADDVSFIGTGADELWRGREAVRAYLRPDFDKGEP 58

Query: 230 VDFQVQDVRARVLTDIAWVTMKTYID------IDTGPFNMTNVFEFHNGQWYMVHHHSSV 283
             F++ D R  V  D+AWV     I         +GP   T V    +G W + H+H S 
Sbjct: 59  WSFELLDRRVTVSGDVAWVDELLDIQMPADGTELSGPCRGTGVLRKTDGGWKIAHYHLSF 118

Query: 284 M 284
            
Sbjct: 119 P 119

This family contains a large number of proteins that share the SnoaL fold. Length = 121

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY 144
           +  L  EI     SYLD   L RL++     R+ A+DD+ W+ L 
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLC 45

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWK 141
           +  L  ++    LS LD   L RLS+ +   R   +    WK
Sbjct: 3   LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 44

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
COG4319	137	Ketosteroid isomerase homolog [Function unknown]	99.78
PF13474	121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	99.75
TIGR02246	128	conserved hypothetical protein. This family consis	99.66
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.51
PF08332	128	CaMKII_AD: Calcium/calmodulin dependent protein ki	99.5
PF14534	107	DUF4440: Domain of unknown function (DUF4440); PDB	99.44
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.96
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.9
PF11533	125	DUF3225: Protein of unknown function (DUF3225); In	98.82
COG4875	156	Uncharacterized protein conserved in bacteria with	98.76
PF13577	127	SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RF	98.75
PF12680	102	SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8	98.74
KOG2997	366	consensus F-box protein FBX9 [General function pre	98.43
PF12893	116	Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL	98.42
cd00781	122	ketosteroid_isomerase ketosteroid isomerase: Many	98.28
cd00531	124	NTF2_like Nuclear transport factor 2 (NTF2-like) s	98.25
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.09
TIGR02096	129	conserved hypothetical protein, steroid delta-isom	97.98
KOG4341	483	consensus F-box protein containing LRR [General fu	97.92
TIGR02960	324	SigX5 RNA polymerase sigma-70 factor, TIGR02960 fa	97.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.73
PRK08241	339	RNA polymerase factor sigma-70; Validated	97.7
PF06881	109	Elongin_A: RNA polymerase II transcription factor	97.7
PF07858	125	LEH: Limonene-1,2-epoxide hydrolase catalytic doma	97.39
PF07366	126	SnoaL: SnoaL-like polyketide cyclase; InterPro: IP	97.39
PRK09636	293	RNA polymerase sigma factor SigJ; Provisional	97.14
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	97.06
PLN02382	413	probable sucrose-phosphatase	96.97
KOG3926	332	consensus F-box proteins [Amino acid transport and	96.95
PF02136	118	NTF2: Nuclear transport factor 2 (NTF2) domain; In	96.77
cd00667	160	ring_hydroxylating_dioxygenases_beta Ring hydroxyl	96.6
COG4538	112	Uncharacterized conserved protein [Function unknow	96.48
TIGR02957	281	SigX4 RNA polymerase sigma-70 factor, TIGR02957 fa	95.93
COG3631	133	Ketosteroid isomerase-related protein [General fun	95.76
PRK10069	183	3-phenylpropionate dioxygenase subunit beta; Provi	95.67
PRK01617	154	hypothetical protein; Provisional	95.62
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	95.54
PF05223	118	MecA_N: NTF2-like N-terminal transpeptidase domain	95.29
PRK09635	290	sigI RNA polymerase sigma factor SigI; Provisional	95.19
PRK00183	157	hypothetical protein; Provisional	95.06
COG4308	130	LimA Limonene-1,2-epoxide hydrolase [Secondary met	94.95
cd00780	119	NTF2 Nuclear transport factor 2 (NTF2) domain play	94.38
PRK01752	156	hypothetical protein; Provisional	94.07
COG4337	206	Uncharacterized protein conserved in bacteria [Fun	94.06
COG3012	151	Uncharacterized protein conserved in bacteria [Fun	93.85
PRK04233	129	hypothetical protein; Provisional	93.81
COG4922	129	Uncharacterized protein conserved in bacteria [Fun	93.62
PF12707	128	DUF3804: Protein of unknown function (DUF3804); In	93.61
COG4460	130	Uncharacterized protein conserved in bacteria [Fun	93.51
PRK01842	149	hypothetical protein; Provisional	92.51
PF13013	109	F-box-like_2: F-box-like domain	92.31
PRK02250	166	hypothetical protein; Provisional	91.11
COG4994	120	Uncharacterized protein conserved in bacteria [Fun	90.29
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	89.15
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	88.2
PF02982	160	Scytalone_dh: Scytalone dehydratase; InterPro: IPR	81.78

>COG4319 Ketosteroid isomerase homolog [Function unknown]

Probab=99.78  E-value=6.2e-18  Score=142.81  Aligned_cols=117  Identities=20%  Similarity=0.326  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCCEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gDvAv  247 (297)
                      .+|++++..|.+|++++|+++++++|++|..+  +.|.+.+..|+++|++.|+.+|... .+..+++++++|.+.||+|+
T Consensus        10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~--f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~   87 (137)
T COG4319          10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVV--FPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAF   87 (137)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhcCCceEE--ecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEE
Confidence            67999999999999999999999999999533  4455778999999999999999644 46789999999999999999


Q ss_pred             EEEEeeeEe--CCCc-----eEEEEEEEEe-CCeEEEEEEecCCCCCCC
Q 022429          248 VTMKTYIDI--DTGP-----FNMTNVFEFH-NGQWYMVHHHSSVMLVDG  288 (297)
Q Consensus       248 v~~~e~v~~--~~g~-----lraT~VfrR~-dG~WrlvhhHaSp~~~~~  288 (297)
                      +++..++..  .+|+     .|+|.||||+ ||+||++|+| +|..++.
T Consensus        88 ~~~~~~~~~~~~dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh-~~~~~~~  135 (137)
T COG4319          88 VTALLLLTGTKKDGPPADLAGRATYVFRKEADGGWKLAHDH-IPNTDPE  135 (137)
T ss_pred             EEEeeeeeccCCCCcchhheeeeEEEEEEcCCCCEEEEEec-cccCCCC
Confidence            999999986  3443     6999999997 6699999999 7665554

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B

Probab=99.75  E-value=3.2e-17  Score=130.80  Aligned_cols=113  Identities=20%  Similarity=0.309  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      |+++.++|++|++++|++++.++|++|  .+.+.++. ....|++++++.|+..|+...+..+++.++++...+|+|+++
T Consensus         1 V~~~~~~~~~a~~~~D~~~~~~~~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~   78 (121)
T PF13474_consen    1 VEALLEEWIEAFERGDIDALLSLFSDD--FVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVT   78 (121)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHEEEE--EEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHhhCCC--EEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEE
Confidence            678899999999999999999999977  56677654 556799999999999997666788999999999999999999


Q ss_pred             EEeeeEe-CCC-----ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          250 MKTYIDI-DTG-----PFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       250 ~~e~v~~-~~g-----~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      +..++.. .++     ..|.|.||+|++|+|||+|+|.|.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~S~p~  120 (121)
T PF13474_consen   79 GEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHWSAPA  120 (121)
T ss_dssp             EEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEEEE-B
T ss_pred             EEEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEecCcC
Confidence            9987754 222     36999999999999999999999764

>TIGR02246 conserved hypothetical protein

Probab=99.66  E-value=6.4e-15  Score=119.00  Aligned_cols=117  Identities=15%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCC-CceeEEEEeEEEEeC-C
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQ-GVDFQVQDVRARVLT-D  244 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~v~g-D  244 (297)
                      +.++|+++.++|++|++++|.++++++|++|....+ .+++ .+.|+++|++.|+..+.... ...++++...+.+.| |
T Consensus         2 d~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-~~g~-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   79 (128)
T TIGR02246         2 DERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVT-VPGQ-VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPD   79 (128)
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-CCCC-eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCC
Confidence            356899999999999999999999999999964432 3444 78999999999998886543 234666666677655 6


Q ss_pred             EEEEEEEeeeEeCC-C------ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          245 IAWVTMKTYIDIDT-G------PFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       245 vAvv~~~e~v~~~~-g------~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      +|++.+..++...+ +      ..++|.+|+|++|+|||+|+|.|+++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~s~~~  127 (128)
T TIGR02246        80 LAIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHNTPVR  127 (128)
T ss_pred             EEEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccCCCCC
Confidence            99999888765422 1      36899999999999999999999864

This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.51  E-value=1.1e-14  Score=101.04  Aligned_cols=46  Identities=37%  Similarity=0.541  Sum_probs=41.1

Q ss_pred             hhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhc
Q 022429          100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYH  145 (297)
Q Consensus       100 l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~  145 (297)
                      +..||+||+.+||+|||+.||+++++|||+|+++++++.+||+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence            3579999999999999999999999999999999999999999875

>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.50  E-value=6.8e-13  Score=111.63  Aligned_cols=116  Identities=21%  Similarity=0.300  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC--CCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCC
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTD  244 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP--gg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gD  244 (297)
                      .++|.++.++|.+|+.+||.+...++|++|.  .+..|  .+..+.|.+.++.-++.++... .+...+|...+|++.|+
T Consensus         2 e~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~--av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~   79 (128)
T PF08332_consen    2 EQEIAALFDRWNDAIQTGDPETYAKLYAPDV--AVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHEEEEE--EEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHhhhcCCCe--eEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence            4689999999999999999999999999993  44444  6778899999999888777543 45567899999998666


Q ss_pred             -EEEEEEEeeeEe-C-CC-----ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          245 -IAWVTMKTYIDI-D-TG-----PFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       245 -vAvv~~~e~v~~-~-~g-----~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                       .|+.+|...+.. + +|     ..+.|.||+|.+|+|+++|||.|+++
T Consensus        80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivhhHsS~mP  128 (128)
T PF08332_consen   80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVHHHSSAMP  128 (128)
T ss_dssp             TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred             CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEEEecCCCC
Confidence             999999987764 2 33     25899999999999999999999863

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A

Probab=99.44  E-value=1.9e-12  Score=100.34  Aligned_cols=101  Identities=17%  Similarity=0.372  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      |.+++++|.+|++++|+++++++|++|  .+.++|+|... |++++.+.+...+..  ...+++++..+.+.||+|++++
T Consensus         1 I~a~~~~~~~A~~~~D~~~~~~~~~~d--~~~~~~~g~~~-~~~~~l~~~~~~~~~--~~~~~~~~~~v~~~gd~a~~~~   75 (107)
T PF14534_consen    1 IRALEEQYEDAFNAGDIDALASLYADD--FVFVGPGGTIL-GKEAILAAFKSGFAR--FSSIKFEDVEVRVLGDTAVVRG   75 (107)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHTTEEEE--EEEEETTSEEE-EHHHHHHHHHHHCEE--EEEEEEEEEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHhCCHHHHHhhhCCC--EEEECCCCCEe-CHHHHHHHHhhccCC--CceEEEEEEEEEEECCEEEEEE
Confidence            678999999999999999999999988  56678888654 899999988775432  3467888899999999999999


Q ss_pred             EeeeEeC-CC-----ceEEEEEEEEeCCeEEE
Q 022429          251 KTYIDID-TG-----PFNMTNVFEFHNGQWYM  276 (297)
Q Consensus       251 ~e~v~~~-~g-----~lraT~VfrR~dG~Wrl  276 (297)
                      ..++... +|     ..+.|.||+|++|+|||
T Consensus        76 ~~~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i  107 (107)
T PF14534_consen   76 RWTFTWRGDGEPVTIRGRFTSVWKKQDGKWRI  107 (107)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred             EEEEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence            9888763 33     36899999999999997

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.96  E-value=4.5e-10  Score=77.55  Aligned_cols=46  Identities=33%  Similarity=0.481  Sum_probs=40.7

Q ss_pred             hhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhh
Q 022429           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY  144 (297)
Q Consensus        99 ~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~  144 (297)
                      .+..||+|++.+||+|||..|++++++|||.|+++..+..+|++.+
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            4678999999999999999999999999999999999999999875

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.90  E-value=9.2e-10  Score=72.84  Aligned_cols=40  Identities=28%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             ccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhh
Q 022429          103 LVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKA  142 (297)
Q Consensus       103 LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~  142 (297)
                      ||+|++.+||+||++.|++++++|||.|+.+.+++.+|++
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999985

>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function

Probab=98.82  E-value=1.1e-07  Score=79.43  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE-eCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV-LTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v-~gDv  245 (297)
                      ...+|.++..+|++|+..+|++.|.+++.+++..+.... ++.+-|.++|++ |+.--. +.++.-++....|.. +.|.
T Consensus         8 v~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~-~E~LyG~~aI~a-FR~~R~-~~~~~R~l~~~~itt~G~d~   84 (125)
T PF11533_consen    8 VVAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGA-GENLYGHDAIRA-FRAARP-GGGPARTLERTVITTFGRDF   84 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEET-TEEEESHHHHHH-HHHHS---TTTT-EEEEEEEEEETTTE
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECC-CccccCHHHHHH-HHhcCC-CCCCCcEEEEEEEEEecCce
Confidence            456889999999999999999999999999988877764 557889999995 333321 223344666777774 5568


Q ss_pred             EEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          246 AWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       246 Avv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      |.+....+-...++.-|=|++|.|.+++||++.-|-|.+
T Consensus        85 A~v~tef~r~~~~~~GRQsQtWvr~~~gWrIvaAHVS~~  123 (125)
T PF11533_consen   85 ATVSTEFRRDGSGRIGRQSQTWVRFPDGWRIVAAHVSLM  123 (125)
T ss_dssp             EEEEEEEEETTECCEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCceeEeEEEEEECCCCEEEEEEEEeec
Confidence            887665443322334588999999999999999999865

; PDB: 2OWP_A 2RCD_B.

>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]

Probab=98.76  E-value=2.5e-07  Score=77.45  Aligned_cols=116  Identities=13%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      ...+|.++.++|-+++..||.+.+.+.|++|..+  ... +......+.+|++-+..++...+.-.+.-+.  |+.+-+.
T Consensus        35 t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVL--LPT~Sn~vR~s~~ei~DYF~~FLk~KPqG~IdsR~--i~~gcN~  110 (156)
T COG4875          35 TEREVAALFDRWNAALTTGDPNKVAANYAPDAVL--LPTMSNQVRSSRSEILDYFSHFLKLKPQGYIDSRK--ITLGCNN  110 (156)
T ss_pred             cHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEe--ecccccccccCHHHHHHHHHHHhccCCcceeccee--EEecccc
Confidence            4456888999999999999999999999999644  222 3445567889999998888766433454444  4455666


Q ss_pred             EEEEEEeeeEe-CCC--ceEEEEEEEEeCCeEEEEEEecCCCCC
Q 022429          246 AWVTMKTYIDI-DTG--PFNMTNVFEFHNGQWYMVHHHSSVMLV  286 (297)
Q Consensus       246 Avv~~~e~v~~-~~g--~lraT~VfrR~dG~WrlvhhHaSp~~~  286 (297)
                      |.-.|..++.. +|.  ..|+|-+|...||.|.|++||+|.+++
T Consensus       111 AlD~GtYTF~f~DGs~v~ARYtftY~w~~g~WlI~~HHSSAMPe  154 (156)
T COG4875         111 ALDAGTYTFIFTDGSNVQARYTFTYSWIDGTWLIVNHHSSAMPE  154 (156)
T ss_pred             ccccceEEEEEcCCcceeEEEEEEEEecCCeEEEEecccccCCC
Confidence            76666666554 333  369999999999999999999998754

>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B

Probab=98.75  E-value=3.7e-07  Score=73.36  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC--CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG--ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT  243 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg--~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g  243 (297)
                      ....+|+++...|..++..+|.+.+.++|++|...  ..++.  ....|+++|++.++..+.........+....|.+.|
T Consensus         4 ~d~~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~--~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg   81 (127)
T PF13577_consen    4 EDRAAIRDLIARYARALDTGDWEEWADLFTEDAVF--DFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG   81 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEE--EETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHhhCCCHHHHHhccCCcEEE--EEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC
Confidence            35678999999999999999999999999998533  44432  468899999998888775444445667777788899


Q ss_pred             CEEEEEEEeeeEe---C-CCc-----eEEEEEEEEeCCeEEEEEE
Q 022429          244 DIAWVTMKTYIDI---D-TGP-----FNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       244 DvAvv~~~e~v~~---~-~g~-----lraT~VfrR~dG~Wrlvhh  279 (297)
                      |.|.+.+......   . ++.     -++++-|+|++|+|||.+.
T Consensus        82 d~A~~~~~~~~~~~~~~~g~~~~~~~g~y~~~~~r~~g~W~i~~~  126 (127)
T PF13577_consen   82 DTATVRSYVLATHRDPDDGEPALWSGGRYTDELVREDGGWRISSR  126 (127)
T ss_dssp             TEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             CEEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEEECCEEEEEEE
Confidence            9988877655432   2 221     4789999999999999875

>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A

Probab=98.74  E-value=2.4e-07  Score=70.40  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEeee
Q 022429          175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYI  254 (297)
Q Consensus       175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~v  254 (297)
                      .++|++|++++|.+++.++|++|  ++..+| +....|++++++.|+..+...+  .+.++..++...||.+++.+....
T Consensus         1 V~~~~~a~~~~d~~~i~~~~~~d--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gd~v~~~~~~~~   75 (102)
T PF12680_consen    1 VRRFFEAWNAGDLDAIAALFAPD--AVFHDP-GGTLRGREAIREFFEEFFESFP--DIRFEIHDIFADGDRVVVEWTVTG   75 (102)
T ss_dssp             HHHHHHHHHTTHHHHHHHTEEEE--EEEEET-TSEEESHHHHHHHHHHHHHHEE--EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CHHHHHHHHcCCHHHHHHHcCCC--EEEEeC-CCcccCHHHHHHHHHHHHhcCC--ceEEEEEEEEEcCCEEEEEEEEEE
Confidence            36899999999999999999999  445677 4458999999999999987443  455555557899999888877766


Q ss_pred             Ee-C-CC--ceEEEEEEEEeCCeEE
Q 022429          255 DI-D-TG--PFNMTNVFEFHNGQWY  275 (297)
Q Consensus       255 ~~-~-~g--~lraT~VfrR~dG~Wr  275 (297)
                      .. . |.  .++...+|+.+||++.
T Consensus        76 ~~~~~g~~~~~~~~~~~~~~dgkI~  100 (102)
T PF12680_consen   76 TTPPTGQPISFRGCSVFRFEDGKIV  100 (102)
T ss_dssp             EETTTSCEEEEEEEEEEEEETTEEE
T ss_pred             EEcCCCCEEEEEEEEEEEEECCEEE
Confidence            33 2 33  3688999999999653

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=98.43  E-value=6.8e-08  Score=92.01  Aligned_cols=73  Identities=21%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             chhhcccHHHHHHHhc-----CCChhhHhhhhccChHHHHHcCCchhhhhhhccccccccCCcCC-------CCChhHHH
Q 022429           98 SMMEQLVPEITTHALS-----YLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIP-------VNGWKAYY  165 (297)
Q Consensus        98 ~~l~~LP~Eil~~Ils-----yLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~~~~~-------~~~WKelY  165 (297)
                      ..+..||+|||++||.     -||-+||-++|+|||.|+..+.++.+||.-|-+.|+....+..+       .++||++|
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mf  184 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMF  184 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHH
Confidence            3467899999999984     78899999999999999999999999999998888875444333       67899999


Q ss_pred             HHHHH
Q 022429          166 AATRA  170 (297)
Q Consensus       166 ~~t~a  170 (297)
                      .....
T Consensus       185 l~RpR  189 (366)
T KOG2997|consen  185 LERPR  189 (366)
T ss_pred             hhCcc
Confidence            87544

>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C

Probab=98.42  E-value=5.2e-06  Score=67.43  Aligned_cols=110  Identities=9%  Similarity=0.041  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhc-cCCCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFN-WEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~-~~~~~~vei~dl~V~v~gDv  245 (297)
                      ..++|+++.+.|.+++..||.+.|.+...++..+..+..+.......++..+.....-. .....+...+.+.|.+.|++
T Consensus         2 d~~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g~~   81 (116)
T PF12893_consen    2 DEAAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDGDV   81 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEETTE
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEECCE
Confidence            46789999999999999999999999999998777776433333345555554332210 22334566677789999999


Q ss_pred             EEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEE
Q 022429          246 AWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVH  278 (297)
Q Consensus       246 Avv~~~e~v~~~~g~lraT~VfrR~dG~Wrlvh  278 (297)
                      |.+.......  +....=.-.+.|.+|+|+|++
T Consensus        82 A~a~v~~~~~--~~~~~d~~~L~K~dg~WkIv~  112 (116)
T PF12893_consen   82 ASAKVEYEFP--GFWFVDYFTLVKTDGGWKIVS  112 (116)
T ss_dssp             EEEEEEEEEE--TEEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEEC--CCceEEEEEEEEECCEEEEEE
Confidence            9998886654  222222335578999999997

>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon

Probab=98.28  E-value=2.7e-05  Score=62.68  Aligned_cols=110  Identities=7%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      +.+++++.++|++|++++|++++..+|++|...  ..| +.+++.|++++++.|...+....  .+++........|+.+
T Consensus         2 ~~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~--~~p~~~~~~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~~~g~~~   77 (122)
T cd00781           2 PQEMKAAVQRYVEAVNAGDPEGIVALFADDATV--EDPVGSPPRSGRAAIAAFYAQSLGGAK--RLELTGPVRASHGGEA   77 (122)
T ss_pred             cHHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEE--eCCCCCCCccCHHHHHHHHHHHhccCc--eEEecCceeeecCCEE
Confidence            457888999999999999999999999999533  344 45578999999999988776532  3444333345567766


Q ss_pred             EEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429          247 WVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .+....++...|+.  +....+|+-.++ .||+.+...
T Consensus        78 ~~~~~~~~~~~g~~~~~~~~~v~~~~~d-GkI~~~~~y  114 (122)
T cd00781          78 AFAFRVEFEWEGQPCVVRVIDVMRFDAD-GRIVSMRAY  114 (122)
T ss_pred             EEEEEEEEEeCCceEEEEEEEEEEECCC-ccChHHHHh
Confidence            66555454434444  456678887532 366665443

Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.

>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily

Probab=98.25  E-value=5.9e-05  Score=58.34  Aligned_cols=109  Identities=10%  Similarity=0.012  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC----CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-EE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-IA  246 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg----~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-vA  246 (297)
                      +++..+|++++.++|.+.+..+|+++...  ..|++    ....|+++|++.++............+..+.+...++ .+
T Consensus         2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~--~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~   79 (124)
T cd00531           2 EQFLYRYARLLDAGDREWLALLYADDAYF--EPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEG   79 (124)
T ss_pred             HHHHHHHHHHhCCchHHHHHhhCcCcEEE--EEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEE
Confidence            46778899999999999999999998533  45553    5678999999988766643212222246666666544 43


Q ss_pred             EEEEE-eeeEeCC-C-c----eEEEEEEEEeCCeEEEEEEecC
Q 022429          247 WVTMK-TYIDIDT-G-P----FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~-e~v~~~~-g-~----lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ..... ..+...+ + .    ...+..++|.+|+|+|...+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~  122 (124)
T cd00531          80 VVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFR  122 (124)
T ss_pred             EEEEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEe
Confidence            33322 2232222 2 1    4678889999999999988753

This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.16  E-value=9.1e-07  Score=85.34  Aligned_cols=53  Identities=26%  Similarity=0.428  Sum_probs=48.8

Q ss_pred             ccchhhccc----HHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccc
Q 022429           96 GASMMEQLV----PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF  148 (297)
Q Consensus        96 ~~~~l~~LP----~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~  148 (297)
                      .+++++.||    .||...||||||+.|||.|-.|||.|.++.+|+.+||+||.+..
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~v  127 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMV  127 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhc
Confidence            467788899    99999999999999999999999999999999999999976543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.2e-06  Score=83.61  Aligned_cols=45  Identities=24%  Similarity=0.292  Sum_probs=43.3

Q ss_pred             hhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhh
Q 022429          100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALY  144 (297)
Q Consensus       100 l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~  144 (297)
                      ++.||+||++.|||.|.-++|++++-||||||+++.|+.+|..+-
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD  142 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD  142 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec
Confidence            778999999999999999999999999999999999999999883

>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related

Probab=97.98  E-value=0.00028  Score=57.04  Aligned_cols=103  Identities=8%  Similarity=0.036  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-EEEEEE
Q 022429          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-IAWVTM  250 (297)
Q Consensus       173 aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-vAvv~~  250 (297)
                      ++.++||+|++++|++.+.+++++|...  ..|+ +....|++++++.++.+++..+...+++.  ++...++ .+++..
T Consensus         2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~v~~~~   77 (129)
T TIGR02096         2 ELAQHWIEAFNRGDMDAVLALLAEDVLY--DDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVV--VCRNDEGVRVAAEW   77 (129)
T ss_pred             HHHHHHHHHHHCCCHHHHHHhcCCCeEE--EcCCCCcEeccHHHHHHHHHHHHHhCchhhceeE--EEEecCCcEEEEEE
Confidence            4678899999999999999999999533  3443 34567799999988888876544444444  4444444 555555


Q ss_pred             EeeeEe---------CCCc--eEEEEEEEEeCCeEEEEEEec
Q 022429          251 KTYIDI---------DTGP--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       251 ~e~v~~---------~~g~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ..+...         .|.+  ++...+|+.++|+  |+.++.
T Consensus        78 ~~~g~~~g~~~g~~~~g~~~~~~~~~~~~~~~gk--I~~~~~  117 (129)
T TIGR02096        78 TVHGTYRTAFLGLPASGKTYSIRGVTFFVFDDGK--IKRETT  117 (129)
T ss_pred             EEeeeeccccCCCCCCCCEEEeeeeEEEEEeCCE--EEEEEE
Confidence            433321         1222  6788899999885  666554

This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.92  E-value=3.5e-06  Score=83.19  Aligned_cols=55  Identities=27%  Similarity=0.454  Sum_probs=47.1

Q ss_pred             Cccchhh-cccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccc
Q 022429           95 SGASMME-QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT  149 (297)
Q Consensus        95 ~~~~~l~-~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~  149 (297)
                      ...+.+. .||||++++||||||-.+||+++|+|+.|+.+|.|..-|.++--..|+
T Consensus        66 ~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~  121 (483)
T KOG4341|consen   66 ADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQ  121 (483)
T ss_pred             hhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcch
Confidence            3444444 699999999999999999999999999999999999999999444443

>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family

Probab=97.78  E-value=0.00041  Score=65.42  Aligned_cols=106  Identities=9%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv  248 (297)
                      .+..++.++|++|+++||++++.+++++|... .+++.+.++.|+++|...+..++.......++++.  +.+.|+.+++
T Consensus       204 ~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~-~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~v  280 (324)
T TIGR02960       204 PEEQDLLERYIAAFESYDLDALTALLHEDAIW-EMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRLLP--TIANGQPAAA  280 (324)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEE-EcCCCCcceeCHHHHHHHHHHhcccccCCceeEEE--eeecCCceEE
Confidence            35678899999999999999999999999533 34456678999999999888773211112344433  4488887777


Q ss_pred             EEEeeeEeCCC--ceEEEEEEEEeCCeEEEEEEec
Q 022429          249 TMKTYIDIDTG--PFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       249 ~~~e~v~~~~g--~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ...  ....|+  .+....+|+-+||  ||+....
T Consensus       281 ~~~--~~~~~~~~~~~~v~~~~~~dG--kI~~~~~  311 (324)
T TIGR02960       281 MYM--RRPDAERHTAFQLHVLEIRGG--RITHVTA  311 (324)
T ss_pred             EEE--EcCCCCeeeeeEEEEEEEcCC--cEEEEEE
Confidence            653  111232  3566778888888  4555443

This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.73  E-value=1.7e-05  Score=81.07  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=61.3

Q ss_pred             ccCCccchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccccccc--CCc-CC--C----CChh
Q 022429           92 ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ--DSV-IP--V----NGWK  162 (297)
Q Consensus        92 ~~~~~~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~--~~~-~~--~----~~WK  162 (297)
                      ++....+++..||.|+..+||+|||.++|+.+.|||+.|+..+.++..|.+.+........  ..+ .+  .    ..||
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  179 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK  179 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence            3455678899999999999999999999999999999999999999999987666555421  111 11  1    5788


Q ss_pred             HHHHHH
Q 022429          163 AYYAAT  168 (297)
Q Consensus       163 elY~~t  168 (297)
                      ..|...
T Consensus       180 s~~~~~  185 (537)
T KOG0274|consen  180 SFYRRR  185 (537)
T ss_pred             hhhhhh
Confidence            888874

>PRK08241 RNA polymerase factor sigma-70; Validated

Probab=97.70  E-value=0.00074  Score=64.38  Aligned_cols=107  Identities=11%  Similarity=0.032  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv  248 (297)
                      ....++.++|++|+++||++++..++++|.... ..|++..+.|+++|++.|..++.......+.+..  ....|+.+++
T Consensus       214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~-~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~--~~~~g~~v~~  290 (339)
T PRK08241        214 PEERALLARYVAAFEAYDVDALVALLTEDATWS-MPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVP--TRANGQPAFA  290 (339)
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEE-cCCCCCcccCHHHHHHHHHhhccccCCCceEEEE--eecCCCeEEE
Confidence            456778899999999999999999999994332 3344556999999999887765432212344433  3667888887


Q ss_pred             EEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429          249 TMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       249 ~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .....  ..|+.  ..+-.||+-+||  ||+..+..
T Consensus       291 ~~~~~--~~g~~~~~~~v~v~~v~dG--kI~~~~~y  322 (339)
T PRK08241        291 QYMRD--PDGGGHRPWALHVLELRGG--RIAHVTSF  322 (339)
T ss_pred             EEEEc--CCCCeeecceEEEEEEeCC--EEEEEEEE
Confidence            65322  12332  466778888888  55555443

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=97.70  E-value=7.6e-05  Score=60.89  Aligned_cols=69  Identities=19%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             hhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccccccC--CcCCCCChhHHHHHHHH
Q 022429          100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD--SVIPVNGWKAYYAATRA  170 (297)
Q Consensus       100 l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~--~~~~~~~WKelY~~t~a  170 (297)
                      +..+|-+++.-||..+++..|.++-.-|..+...  +|.||++++.++|+....  .+....+|+++|....+
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~--tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIED--TDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK   74 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchh--hHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence            4569999999999999999999999999766544  789999999999986322  23345699999998543

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism

Probab=97.39  E-value=0.0052  Score=51.73  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      .++.++|.+|+..+|.++..+.+.+++ .++-+.+.+.+.|++++++.++.+...  ...++++.+++-..|++.+..=.
T Consensus         4 ~~vV~~F~~a~~~~D~~~a~~~~~~~d-~vy~Nvplp~i~G~~~~~~~l~~~~~~--~~~~e~~i~~iaadg~~VltER~   80 (125)
T PF07858_consen    4 EEVVRAFLAALEDRDVDAALASLFDDD-AVYHNVPLPPIRGRDAIRAFLRGFLDS--LSGFEFDIHRIAADGDVVLTERT   80 (125)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHCEECC--EEEETTTEEEESHHHHHHHHHCCHCC--CEEEEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhcCCC-cEEEeCCCCCcccHHHHHHHHHHHhcc--cceeEEEEEEEeecCCEEEEEeE
Confidence            467889999999999887666665554 344555677899999999987766332  34677788888889988766555


Q ss_pred             eeeEeCCC----ceEEEEEEEEeCCe
Q 022429          252 TYIDIDTG----PFNMTNVFEFHNGQ  273 (297)
Q Consensus       252 e~v~~~~g----~lraT~VfrR~dG~  273 (297)
                      ..+...+|    .+.++-||+-+||+
T Consensus        81 D~l~~~dG~~~~~~~V~GvfEv~dGk  106 (125)
T PF07858_consen   81 DVLRFADGPLRIQFPVCGVFEVRDGK  106 (125)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEETTE
T ss_pred             eeeeeecCCeEEEEEEEEEEEEECCE
Confidence            55555333    36889999999994

Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.

>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis

Probab=97.39  E-value=0.0047  Score=50.03  Aligned_cols=95  Identities=14%  Similarity=0.078  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEeee
Q 022429          175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYI  254 (297)
Q Consensus       175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~v  254 (297)
                      .+.|.++++++|++.+..++++|  +....|+.....|.+++++.+..++...+...+++  .++...||.+++......
T Consensus         4 ~~~~~~~~n~~d~~~~~~~~~~d--~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i--~~~~~~gd~v~~~~~~~G   79 (126)
T PF07366_consen    4 RRFYEEVWNRGDLDALDELVAPD--VVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEI--EDVVAEGDRVAVRWTFTG   79 (126)
T ss_dssp             HHHHHHHHHTT-GCHHHGTEEEE--EEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEE--EEEEEETTEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCHHHHHHhcCCC--EEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEE--EEEEEECCEEEEEEEEEE
Confidence            34555677999999999999999  34444444678899999999998888766555544  457888998777766554


Q ss_pred             EeC--------CC---ceEEEEEEEEeCCe
Q 022429          255 DID--------TG---PFNMTNVFEFHNGQ  273 (297)
Q Consensus       255 ~~~--------~g---~lraT~VfrR~dG~  273 (297)
                      +..        .|   .++...+|+-++|+
T Consensus        80 th~g~~~g~~ptgk~v~~~~~~~~~~~~gk  109 (126)
T PF07366_consen   80 THTGEFMGIPPTGKPVEFRGMSIFRFEDGK  109 (126)
T ss_dssp             EESSEBTTBE-TTEEEEEEEEEEEEEETTE
T ss_pred             eecCCcCCcCCCCCEEEEEEEEEEEEECCE
Confidence            431        12   26788899999984

This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.

>PRK09636 RNA polymerase sigma factor SigJ; Provisional

Probab=97.14  E-value=0.012  Score=55.20  Aligned_cols=78  Identities=15%  Similarity=0.069  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC------CCCCCHHHHHHHHHHHhccCCC-ceeEEEEeEEEEeC
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG------ELFSGYNSVIQSWQIAFNWEQG-VDFQVQDVRARVLT  243 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg------~~l~Gr~aVr~sW~~if~~~~~-~~vei~dl~V~v~g  243 (297)
                      -.++.++|++|+++||++++.+++++|.... .+++|      .++.|++.|...+..++..... ....++  .+.+.|
T Consensus       173 ~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~-~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~--~~~vnG  249 (293)
T PRK09636        173 GAELVEAFFAALASGDLDALVALLAPDVVLH-ADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVR--LALVNG  249 (293)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhhCeEEE-ecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEE--EEEECC
Confidence            4568899999999999999999999995332 22222      3367999999988877754321 122332  467899


Q ss_pred             CEEEEEEE
Q 022429          244 DIAWVTMK  251 (297)
Q Consensus       244 DvAvv~~~  251 (297)
                      +-|++...
T Consensus       250 ~~a~~~~~  257 (293)
T PRK09636        250 LPGFVTAE  257 (293)
T ss_pred             ceeEEEEe
Confidence            98888754

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=97.06  E-value=0.002  Score=50.37  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCC-HHHHHHHHHHHhccCCCceeEEEEeEEEEe--CC
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSG-YNSVIQSWQIAFNWEQGVDFQVQDVRARVL--TD  244 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~G-r~aVr~sW~~if~~~~~~~vei~dl~V~v~--gD  244 (297)
                      ...+.++...|+.|+..||.+...++..++..- ...+.. .+.. ...+...-........  .+  +.++|...  ||
T Consensus         6 ~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~v~~~~~g~   79 (111)
T PF12870_consen    6 SSTPEEVVKNFFDALKNGDYEKAYAYLSPESRE-PEKAKE-DFEQFEKQFASEMKKKYKKIG--SI--KIVEVEENTIGD   79 (111)
T ss_dssp             ---HHHHHHHHHHHHCTT-HHHHHHTB--TT---SHHHHH-HHHHHHHHHHHHHHHHHHHTT--SE--EEEEEEEEEESS
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHhhCccccc-hhHHHH-HHHHHHHHHHHHHHHhhhccC--ce--EEEEEEEeccCC
Confidence            345778899999999999999999887655211 000000 0000 0111111111111111  22  23333332  99


Q ss_pred             EEEEEEEeeeEeCCCceEEEEEEEEeCCeEEE
Q 022429          245 IAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYM  276 (297)
Q Consensus       245 vAvv~~~e~v~~~~g~lraT~VfrR~dG~Wrl  276 (297)
                      .|.|+...... +|.....+..+.|+||+|+|
T Consensus        80 ~A~V~v~~~~~-~g~~~~~~~~lvk~dg~Wkv  110 (111)
T PF12870_consen   80 TATVTVKITYK-DGKEKTFTVPLVKEDGKWKV  110 (111)
T ss_dssp             EEEEEEEEEET-TS-EEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEEEC-CCCeeEEEEEEEEECCEEEe
Confidence            99998887653 33334556678999999997

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

>PLN02382 probable sucrose-phosphatase

Probab=96.97  E-value=0.018  Score=57.28  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCC-------hhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCC--ceeEEEEe
Q 022429          167 ATRAVVNVNAEFFNIIRERS-------LPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQG--VDFQVQDV  237 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agD-------ldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~--~~vei~dl  237 (297)
                      ...+|.+.. .||+.+.+|+       ++++++...++  -+.|||.|..+ .+.+.++.++..-...++  ..+.++++
T Consensus       283 ~~~evv~~~-~~~e~W~~~~~~~~~~~~~~l~~~~~p~--~~~v~p~G~~~-~~~~~~~~~~~~~G~~~g~~~~i~vd~~  358 (413)
T PLN02382        283 PAHEVVKFY-LFYEKWRRGEVENSDEVFQRLKSSCAPN--GVFVHPSGVEK-SLHDSIDELRSCYGDKKGKKFRVWVDRV  358 (413)
T ss_pred             cHHHHHHHH-HHHHHHhcCCCCCcHHHHHHHHHhcCCC--eeEECCCcccC-CHHHHHHHHHHhhCCCCCCEEEEEEeeE
Confidence            333444333 4666666766       78888998888  57799998544 588999888888877777  67777777


Q ss_pred             EEE-EeCCEEEEEEEeeeEeCCCc--eEEEEEEEEe---CCeEEEEEEecCCC
Q 022429          238 RAR-VLTDIAWVTMKTYIDIDTGP--FNMTNVFEFH---NGQWYMVHHHSSVM  284 (297)
Q Consensus       238 ~V~-v~gDvAvv~~~e~v~~~~g~--lraT~VfrR~---dG~WrlvhhHaSp~  284 (297)
                      ++. ...|.++|...+.=...+..  -++|.||++.   .|+++..|-|.++.
T Consensus       359 ~~~~~~~~~~~v~~~e~q~~~~~~~~~~ttavl~~~~~~~~~~~W~hlheTw~  411 (413)
T PLN02382        359 LSTQLGPDTWLVKFDKWEQSGDERKCCLTTALLTSKEDTPNGLEWMHVHQTWL  411 (413)
T ss_pred             EEEEEcCCeEEEEEeeeeecCCcceeEEEEEEEeeCCCCCCCeEEEEeeeccc
Confidence            766 46779999888654322222  4789999986   58888889998764

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=96.95  E-value=0.00079  Score=63.42  Aligned_cols=81  Identities=23%  Similarity=0.290  Sum_probs=62.4

Q ss_pred             ccccCCccchhhcccHHHHHHHhcCC-ChhhHhhhhccChHHHHHcCCchhhhhhhccccccccC------CcCCCCChh
Q 022429           90 VAERGSGASMMEQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD------SVIPVNGWK  162 (297)
Q Consensus        90 ~~~~~~~~~~l~~LP~Eil~~IlsyL-d~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~------~~~~~~~WK  162 (297)
                      ++++.....-+..||.|+++.|+--| |-.||..++|+=..++.+.+++.+||+|++-.|...|-      .......||
T Consensus       192 i~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWk  271 (332)
T KOG3926|consen  192 ITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWK  271 (332)
T ss_pred             ccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHH
Confidence            44444445568899999999987554 78999999999999999999999999998888876321      112235699


Q ss_pred             HHHHHHHH
Q 022429          163 AYYAATRA  170 (297)
Q Consensus       163 elY~~t~a  170 (297)
                      ++|.+...
T Consensus       272 qmyf~L~r  279 (332)
T KOG3926|consen  272 QMYFQLRR  279 (332)
T ss_pred             HHHHHHHH
Confidence            99998544

>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein

Probab=96.77  E-value=0.081  Score=42.24  Aligned_cols=104  Identities=11%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC-CCCCHHHHHHHHHHHhccCCCceeEEEEeEEE--E-eCCEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-LFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR--V-LTDIAW  247 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~-~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~--v-~gDvAv  247 (297)
                      ....+.||+++.++|.+.+.++|.++.  +..++.+. ...|+++|.+.|...-...  ..+.+..+++.  . .++..+
T Consensus         3 ~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~--s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~qp~~~~~~~i~   78 (118)
T PF02136_consen    3 NSFVQQYYQLFDSGDREGLHKLYHDDA--SFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQPSPSSDGSIL   78 (118)
T ss_dssp             HHHHHHHHHHHHHTHGGGGGGGEEEEE--EEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEEEEEECCSEEE
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHcCCC--eeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccccccccCCcEE
Confidence            355678999999999999999997553  44677777 8999999999887665443  36667777777  3 334444


Q ss_pred             EEEEeeeEeCCC--ceE--EEEEEEEeCCeEEEEEE
Q 022429          248 VTMKTYIDIDTG--PFN--MTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       248 v~~~e~v~~~~g--~lr--aT~VfrR~dG~Wrlvhh  279 (297)
                      ++..-.+..++.  ..+  -|-|....+++|.+...
T Consensus        79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd  114 (118)
T PF02136_consen   79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIAND  114 (118)
T ss_dssp             EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEee
Confidence            444444443332  233  35555667789988753

NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....

>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit

Probab=96.60  E-value=0.11  Score=44.12  Aligned_cols=116  Identities=7%  Similarity=-0.111  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC---------------CCCHHHHHHHHHHHhcc-----C
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL---------------FSGYNSVIQSWQIAFNW-----E  227 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~---------------l~Gr~aVr~sW~~if~~-----~  227 (297)
                      ..+|.+++..+..++..+|.+....++++|... .+.+.+..               ..|++.+.+....+...     .
T Consensus         3 ~~~I~~ll~~ya~~LD~~~~~~w~~lft~D~~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~   81 (160)
T cd00667           3 QAEVEQFLYREARLLDDRRWDEWLALFAEDCHY-WVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTGRAWSED   81 (160)
T ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHhhccccEE-EcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcCCccccC
Confidence            457899999999999999999999999999633 22222211               13677777766555531     1


Q ss_pred             C--CceeEEEEeEEEE-eCCEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCeEEEEEEecCCC
Q 022429          228 Q--GVDFQVQDVRARV-LTDIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       228 ~--~~~vei~dl~V~v-~gDvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      +  ....-+..+.|.. .||.|-+.....+..  .++.     ......++|.+|+|||.+......
T Consensus        82 ~~~~~rH~vsn~~i~~~~~d~a~~~s~~~v~~~~~~~~~~~~~g~~~d~~~r~~~~wri~~R~~~~d  148 (160)
T cd00667          82 PPSRTRHLVSNVRVLEGDGGEIEVRSNFVVVRTRLDGESDVFAGGRYDDLRRSEDGLRIASRRVVLD  148 (160)
T ss_pred             CCCcceEEEccEEEEecCCCEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEEEcCCeEEEEEEEEEEe
Confidence            1  2245577777775 477777765544332  2222     234566888899999999887543

This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.

>COG4538 Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.053  Score=43.92  Aligned_cols=98  Identities=8%  Similarity=0.067  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      ++....++-.+|++++|+++.++.|.||..+.- -++...-.|-++||..+...|..+ ..+.  +-+.-.+.|.  +|.
T Consensus         4 e~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~-f~a~~~~gg~aaira~y~e~FaEp-~~~~--~ll~Rv~vGs--~Vi   77 (112)
T COG4538           4 EPEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTT-FDALDGDGGTAAIRAAYGEQFAEP-APEI--SLLDRVSVGS--YVI   77 (112)
T ss_pred             chhHHHHHHHHhhccccHHHHHhhcccceEEEe-cccccccCcHHHHHHHHHHHhcCC-Cccc--eeeeeEEecc--EEe
Confidence            466777888899999999999999999965443 344444568999999999999763 2233  3333333444  334


Q ss_pred             EEeeeEe--CCCceEEEEEEEEeCCe
Q 022429          250 MKTYIDI--DTGPFNMTNVFEFHNGQ  273 (297)
Q Consensus       250 ~~e~v~~--~~g~lraT~VfrR~dG~  273 (297)
                      -.|+++-  ++|+.-+.-||.-.+|.
T Consensus        78 DHEhvtr~~g~ge~dvaciYtv~~g~  103 (112)
T COG4538          78 DHEHVTRGTGGGERDVACIYTVVEGL  103 (112)
T ss_pred             cceeeccCCCCCceeEEEEEEEeCCe
Confidence            4466653  34677777888877774

>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family

Probab=95.93  E-value=0.19  Score=47.03  Aligned_cols=100  Identities=11%  Similarity=-0.002  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeee-----cCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCI-----HASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cv-----hPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      +-+++.++|.+|+.+||++++.++.++|.....-     .+...++.|++.|...+..+..... ....+  .-+.++|.
T Consensus       165 ~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~-~~~~~--~~~~vnG~  241 (281)
T TIGR02957       165 ESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLG-PGGRV--DPVDVNGQ  241 (281)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccC-CCceE--EEEEECCC
Confidence            4567899999999999999999999999533211     2223357899999988776654221 12222  22457788


Q ss_pred             EEEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEe
Q 022429          245 IAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       245 vAvv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhH  280 (297)
                      -|++...      ++......++.-++|  +|.+..
T Consensus       242 p~~~~~~------~~~~~~~~~~~~~~g--~I~~i~  269 (281)
T TIGR02957       242 PAVLVRI------DGKLAYVVTFAIEGG--GIQNIY  269 (281)
T ss_pred             ceEEEEe------CCcEEEEEEEEEECC--EEEEEE
Confidence            7766553      222333334444555  555443

This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.

>COG3631 Ketosteroid isomerase-related protein [General function prediction only]

Probab=95.76  E-value=0.1  Score=44.31  Aligned_cols=100  Identities=10%  Similarity=0.078  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC----CCC-CHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE----LFS-GYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~----~l~-Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      .+....+|+|+.+||.+.+.+++++|...  ..|+.+    ... |.+.++..+......-  .....+...+.+.||--
T Consensus         7 ~~~v~~~f~a~~~GD~~~~~~l~a~D~v~--~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~--~~~~~~~~~~~~~gD~~   82 (133)
T COG3631           7 TDLVRRYFAALSRGDLDGLLALLAEDVVW--EVPGTPPLSGTFRGGVAIRRDVFALLPRLI--EDGRFTVETVYVSGDPV   82 (133)
T ss_pred             hhHHHHHHHHHhcCCHHHHHhhccCceEE--EeeCCCCCccccccchhhhhHHhhhChhhc--ccccccceEEEEcCCce
Confidence            35678899999999999999999999543  355432    223 3444444332222221  13455566677777732


Q ss_pred             --EEEEEeeeEeCCCce--EEEEEEEEeCCeEE
Q 022429          247 --WVTMKTYIDIDTGPF--NMTNVFEFHNGQWY  275 (297)
Q Consensus       247 --vv~~~e~v~~~~g~l--raT~VfrR~dG~Wr  275 (297)
                        +.....++...|..+  ++-.|++-.||+=.
T Consensus        83 ~~v~~~~~~~~~~G~~~~~~~~~v~~vrdGrI~  115 (133)
T COG3631          83 GAVFRTRGRVSRTGKPYENRYAFVIRVRDGRIT  115 (133)
T ss_pred             EEEEEecCcccccCceeecceEEEEEEeCCEEE
Confidence              333333343344444  55667777788533

>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional

Probab=95.67  E-value=0.69  Score=40.80  Aligned_cols=115  Identities=6%  Similarity=-0.033  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCC--------------------HHHHHHHHHHHhc
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSG--------------------YNSVIQSWQIAFN  225 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~G--------------------r~aVr~sW~~if~  225 (297)
                      ...+|.+........+..+|.+....+|++|.  .+.-| .+....|                    +..+++....+..
T Consensus        18 ~~~eI~~~l~~eA~lLD~~d~~~Wl~lft~D~--~Y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Rv~rl~~   95 (183)
T PRK10069         18 LHHEISQFLYREARLLDEWRYDDWLALLAEDI--HYTMPMRTTVNAQRRDRREGVQTPPTMAWFDDNKDQLERRVARLET   95 (183)
T ss_pred             HHHHHHHHHHHHHHHhchhhHHHHHHhhcccc--EEEccccccccccccccccccCCCcccEEEcCCHhHHHHHHHHHhC
Confidence            34568888889999999999999999999995  33332 1212222                    4555554444442


Q ss_pred             ------cCCC-ceeEEEEeEEEE-e-CCEEEEEEEeeeE-e-CCC--c---eEEEEEEEEeCCeEEEEEEecCC
Q 022429          226 ------WEQG-VDFQVQDVRARV-L-TDIAWVTMKTYID-I-DTG--P---FNMTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       226 ------~~~~-~~vei~dl~V~v-~-gDvAvv~~~e~v~-~-~~g--~---lraT~VfrR~dG~WrlvhhHaSp  283 (297)
                            .++. ....+..+.|.. . +|.|.+.....+. . .++  .   -+....++|++|+|||....-..
T Consensus        96 ~~~~s~~p~~rtrH~vsNv~V~~~~~~d~a~vrS~~~v~~~~~~~~~~~~~G~y~D~l~r~~~gwrI~~R~v~l  169 (183)
T PRK10069         96 GMAWAEEPPSRLRHLITNVRVEETDIPDEFAVRSNFLLYRSRGERDEDFLVGRREDVLRREGDGWRLARRRIVL  169 (183)
T ss_pred             CCccccCCCCcceEEEeeEEEEecCCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEcCCEEEEEEEEEEE
Confidence                  2222 245677777764 3 4566665543332 2 221  1   25668899999999999988653

>PRK01617 hypothetical protein; Provisional

Probab=95.62  E-value=0.089  Score=45.80  Aligned_cols=96  Identities=15%  Similarity=0.191  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      ..++..++|.||..||++-+.+-|.++-     .+    ..-+++|.+ |..-..|   ..++|.+..-...++.++|..
T Consensus        30 aE~LMRSRYsAy~~~~~dYl~~T~hP~~-----r~----~~~~~~i~~-~~~~~~w---~~L~Il~~~~g~~~~~g~VeF   96 (154)
T PRK01617         30 PEHLMRSRYCAFVMKDADYLIKTWHPDC-----HA----AAWRAEIIA-GFANTEW---LGLTVFEHTWGDADNEGFVEF   96 (154)
T ss_pred             HHHHHHHHHHHHHhcccchhhhcCCCcc-----Cc----chhHHHHhh-cccCCEE---eccEEEEecCCCCCceEEEEE
Confidence            4678889999999999999999886552     11    111233332 2111122   123333222223346888888


Q ss_pred             EeeeEeCC--C--ceEEEEEEEEeCCeEEEEEE
Q 022429          251 KTYIDIDT--G--PFNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       251 ~e~v~~~~--g--~lraT~VfrR~dG~Wrlvhh  279 (297)
                      ......++  .  .++=+.-|+|++|+|+.+.-
T Consensus        97 ~A~y~~~g~~~~~~~~ErS~F~r~~g~W~Yvdg  129 (154)
T PRK01617         97 VARFTEGGKTGRTAIIERSRFLKENGQWYYIDG  129 (154)
T ss_pred             EEEEecCCccccceEEEeeeeEEeCCCEEecCC
Confidence            87775433  2  45667799999999998763

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=95.54  E-value=0.0045  Score=59.88  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             hhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccccc
Q 022429           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL  150 (297)
Q Consensus        99 ~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~  150 (297)
                      .++.||..+++.|+|+|++++|.+++.|.+++.++++.+.+|++.+.++|..
T Consensus         7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~i   58 (386)
T KOG4408|consen    7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLLI   58 (386)
T ss_pred             chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccccc
Confidence            3678999999999999999999999999999999999999999999888775

>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide

Probab=95.29  E-value=0.15  Score=41.65  Aligned_cols=104  Identities=14%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-EeCCEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-VLTDIAWVT  249 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-v~gDvAvv~  249 (297)
                      ..++.++|.+|+++||.++|..+-.+..         ....+.++..+..+.++..-..-.+++....+. ..++.+.+.
T Consensus         3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~---------k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~   73 (118)
T PF05223_consen    3 PEETAEAFLEAWEKGDYAAMYELTSDPS---------KSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVP   73 (118)
T ss_dssp             --HHHHHHHHHHHTT-HHHHHHTB-HHH---------HHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhchhh---------hccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEE
Confidence            4567889999999999999998754431         112235566667777776433334556555554 455678887


Q ss_pred             EEeeeEeCCCc---eEEEEEEEEeCCeEEEEEEecCCC
Q 022429          250 MKTYIDIDTGP---FNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       250 ~~e~v~~~~g~---lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      ..-.+....|.   ...+.-++|.++.|+ |++..|.+
T Consensus        74 ~~~~~~t~~g~~~~~~~~~~l~~~~~~W~-V~W~ps~I  110 (118)
T PF05223_consen   74 YTVTMDTPAGGIWTYNYTLTLVKEDDDWK-VDWDPSLI  110 (118)
T ss_dssp             EEEEEEETTEEE-EEEEEEEEEEETTCEE-E---GGGT
T ss_pred             EEEEEEeCCCCceeeEEEEEEEecCCcEE-EEeCccCC
Confidence            77666553332   456667788899999 56666654

Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.

>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional

Probab=95.19  E-value=0.36  Score=45.72  Aligned_cols=99  Identities=11%  Similarity=0.014  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      +-+++.++|.+|+.+||++++.++.++|..--.+.|...++.|.+.|...+..+... +  ...  -+-+.++|.-|++.
T Consensus       175 ~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~~-~--~~~--~~~~~~ng~p~~~~  249 (290)
T PRK09635        175 QHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSH-P--ATV--LVAQPVCGQPAVLA  249 (290)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhcc-C--ceE--EEEeeeCCCceEEE
Confidence            346788999999999999999999999963222334345678999999877655432 1  222  23356788877765


Q ss_pred             EEeeeEeCCCceEEEEEEEEeCCeEEEEEEec
Q 022429          250 MKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       250 ~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ..      ++......++.-.+|  +|++.+.
T Consensus       250 ~~------~~~~~~~~~~~~~~~--~I~~i~~  273 (290)
T PRK09635        250 FV------NRALAGVLALSIEAG--KITKIHV  273 (290)
T ss_pred             Ee------CCceEEEEEEEEECC--EEEEEEE
Confidence            43      222334445555555  5555443

>PRK00183 hypothetical protein; Provisional

Probab=95.06  E-value=0.2  Score=43.88  Aligned_cols=95  Identities=15%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEE-EEeCCEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRA-RVLTDIAWVT  249 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V-~v~gDvAvv~  249 (297)
                      -+++..++|.||..+|++-+.+-|.++-     .+    ....++|.+ |..--.|   ..++|.+... ...++.+.|.
T Consensus        30 aE~LMRSRYsAf~~~~~dYL~~T~hP~~-----r~----~~~~~~i~~-~~~~~~W---l~LeI~~~~~~~~~~~~g~Ve   96 (157)
T PRK00183         30 AEALMRSRYSAYVLGLVDYLVATTLPAQ-----QA----GLDRAAIAA-WSAQSTW---LGLEVESSEVLGGQPEHAFVT   96 (157)
T ss_pred             HHHHHHHHHHHHHhcccchhhhccCccc-----cc----ccchHHHhh-cccCCEE---eceEEEEcccCCCCCceEEEE
Confidence            4568889999999999999999986552     11    111344433 3211122   2233322111 1224688888


Q ss_pred             EEeeeEeCC--CceEEEEEEEEeCCeEEEEE
Q 022429          250 MKTYIDIDT--GPFNMTNVFEFHNGQWYMVH  278 (297)
Q Consensus       250 ~~e~v~~~~--g~lraT~VfrR~dG~Wrlvh  278 (297)
                      -..+...++  ..++=..-|+|++|+|+.+-
T Consensus        97 F~A~y~~~g~~~~lhE~S~F~r~~g~W~YvD  127 (157)
T PRK00183         97 FTARWHDADGEHSHRERSAFVQHQGRWYFID  127 (157)
T ss_pred             EEEEEecCCCccceeeeeeeeEeCCEEEecc
Confidence            887775433  24677889999999999875

>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.95  E-value=0.17  Score=42.53  Aligned_cols=96  Identities=17%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      .+..++|.+||..-|.++..+.|...+. +..++|-+.++|.+..+.-|+..+..  -..++++.+++-..|...+.   
T Consensus         9 i~~V~aF~aA~~~~d~~~avr~~~~~d~-v~~n~gis~i~G~~~~ia~l~~~~~~--~~~~ef~I~riAadg~~Vlt---   82 (130)
T COG4308           9 IRTVEAFLAALQEDDGDAAVRRLGTPDT-VYNNVGISTIHGPAETIALLRPRMAG--ILGFEFKILRIAADGGAVLT---   82 (130)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHhcCCCe-eeccCCcccccchhhhhhhhccccCC--cceeEEEEEEEecccceehh---
Confidence            4678899999999999999999997654 45777888899999999988764433  35677888777666554332   


Q ss_pred             eeeEe--CC-C--ceEEEEEEEEeCCe
Q 022429          252 TYIDI--DT-G--PFNMTNVFEFHNGQ  273 (297)
Q Consensus       252 e~v~~--~~-g--~lraT~VfrR~dG~  273 (297)
                      |+++.  +| +  .+.++-||+-+||+
T Consensus        83 ER~D~~~~g~~~~~~~V~GvfEV~~~r  109 (130)
T COG4308          83 ERLDARIDGPLWVQFWVCGVFEVEDGR  109 (130)
T ss_pred             hhhhhhccCCcEEEEEEEEEEEEeCCE
Confidence            33322  22 2  37889999999985

>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus

Probab=94.38  E-value=1.6  Score=35.25  Aligned_cols=101  Identities=14%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-C--EEEEE
Q 022429          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-D--IAWVT  249 (297)
Q Consensus       173 aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-D--vAvv~  249 (297)
                      .-.+.||..+. ++.+.|.++|.++.  ...+++.....|.++|.+.+...-..  ...+.+..+++.... +  +-.|+
T Consensus         8 ~Fv~~YY~~l~-~~~~~L~~fY~~~s--~~~~~~~~~~~g~~~I~~~l~~lp~~--~~~~~i~~~d~q~~~~~~ili~V~   82 (119)
T cd00780           8 AFVQQYYSIFD-NNREGLHRLYGDTS--MLSREGMKQVTGRDAIVEKLSSLPFQ--KTKHKITTVDSQPTPSGGVIVMVT   82 (119)
T ss_pred             HHHHHHHHHHh-cCHHHHHhhcCCCc--EEEECCceEecCHHHHHHHHHhCCCc--ceEEEEEEEeeeEcCCCCEEEEEE
Confidence            34568899998 68999999999985  44777536788999999965432211  346777777777654 3  34444


Q ss_pred             EEeeeEeCCCc--eEEEEEEEEeCCeEEEEEE
Q 022429          250 MKTYIDIDTGP--FNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       250 ~~e~v~~~~g~--lraT~VfrR~dG~Wrlvhh  279 (297)
                      |.-... ++..  +.-|-+..+.+++|.+...
T Consensus        83 G~~~~~-~~~~~~F~q~F~L~~~~~~~~I~nD  113 (119)
T cd00780          83 GSLKLD-EQPPRKFSQTFVLAPQNGGYFVLND  113 (119)
T ss_pred             EEEEEC-CCCceeEeEEEEEEecCCeEEEEee
Confidence            543332 2223  3345566667899998754

This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.

>PRK01752 hypothetical protein; Provisional

Probab=94.07  E-value=0.21  Score=43.65  Aligned_cols=96  Identities=9%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      +++..++|.||..+|++-+.+-|.++         -......+++.+ |..-..|   ..++|.+.. ...++.++|.-.
T Consensus        34 E~LMRSRYSAy~~~~~dYL~~T~hp~---------~r~~~~~~~~~~-~~~~~~W---~~LeI~~~~-~~~~~~g~VeF~   99 (156)
T PRK01752         34 EQLMRSRYAAYVLKNIDYIVETTVPS---------QQTLLDPAALQT-WAENTTW---LGLEILAHE-SLTKIHSAVEFK   99 (156)
T ss_pred             HHHHHHHHHHHHhcccchhhhcCCcc---------cccCcCHHHHhc-cccCCeE---eeeEEEecc-CCCCceEEEEEE
Confidence            67889999999999999999988655         211112344432 3211122   133333322 233468888888


Q ss_pred             eeeEeCCC--ceEEEEEEEEeCCeEEEEEEec
Q 022429          252 TYIDIDTG--PFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       252 e~v~~~~g--~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      .....++.  .++=..-|+|++|+|..+.-+.
T Consensus       100 A~y~~~g~~~~~hE~S~F~r~~g~W~YvDG~~  131 (156)
T PRK01752        100 AIFQGEEGEQAHHERSLFVKIDNRWYFVDPTV  131 (156)
T ss_pred             EEEecCCCccccchhhhheeccCCEEEecCCC
Confidence            77764332  3566778999999999987543

>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.06  E-value=0.17  Score=44.49  Aligned_cols=56  Identities=25%  Similarity=0.329  Sum_probs=45.7

Q ss_pred             ceeEEEEeEEEEeCCEEEEEEEeeeEeCCCc---eEEEEEEEEe-CCeEEEEEEecCCCC
Q 022429          230 VDFQVQDVRARVLTDIAWVTMKTYIDIDTGP---FNMTNVFEFH-NGQWYMVHHHSSVML  285 (297)
Q Consensus       230 ~~vei~dl~V~v~gDvAvv~~~e~v~~~~g~---lraT~VfrR~-dG~WrlvhhHaSp~~  285 (297)
                      .+++++.-.|.+.||+|..+|.-.+..+.|.   +--|.-|.|. +|.-||+.||+|.|-
T Consensus       144 r~v~ikNAAi~I~Gd~AtTtGNV~itdk~G~~TtVDKtWaFkKdd~G~lRIv~HHSSLPY  203 (206)
T COG4337         144 REVRIKNAAIYIDGDLATTTGNVFITDKKGQETTVDKTWAFKKDDQGQLRIVLHHSSLPY  203 (206)
T ss_pred             eeeeeeceeEEEeccccceeccEEEEcCCCceEEeeceeeeeccCCCcEEEEEecCCCCc
Confidence            3788999999999999999998777643332   4558899995 799999999999874

>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.85  E-value=0.25  Score=42.63  Aligned_cols=93  Identities=13%  Similarity=0.213  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      .++...+|.|+.-+|++-+.+-|         ||.-+...-++++++.    |.......++|......-..+.+.|.-.
T Consensus        31 e~LMRSRy~Ayvlkn~dYli~Tw---------hPs~qa~~~~~~l~~~----~~~t~wlGL~I~~h~~~~~~~~~~VeF~   97 (151)
T COG3012          31 EALMRSRYCAYVLKNADYLIKTW---------HPSCQAALDRAELIAG----FAHTEWLGLTIIEHTGLGAPNHGFVEFV   97 (151)
T ss_pred             HHHHHHHHHHHHhcCchheeecc---------CCccccccchhHhhcc----cccceEeeEEEEEeccCCCCcceeEEEE
Confidence            45778999999999999888777         5543333335566542    3333223344433333333568999999


Q ss_pred             eeeEeCC--CceEEEEEEEEeCCeEEEE
Q 022429          252 TYIDIDT--GPFNMTNVFEFHNGQWYMV  277 (297)
Q Consensus       252 e~v~~~~--g~lraT~VfrR~dG~Wrlv  277 (297)
                      .+....+  +..+=...|+|++|+|..+
T Consensus        98 A~f~~~~~~~a~~ErSrFvk~ngrWyyi  125 (151)
T COG3012          98 ARFKGGGKTGAHHERSRFVKINGRWYYI  125 (151)
T ss_pred             EEEccCCccchhhhhhhheEECCEEEEE
Confidence            8887533  2356677999999999976

>PRK04233 hypothetical protein; Provisional

Probab=93.81  E-value=0.32  Score=41.24  Aligned_cols=89  Identities=15%  Similarity=0.195  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe-CCEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL-TDIAWVT  249 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~-gDvAvv~  249 (297)
                      -+++..+.|.||..||++-+.+-|.++-     .|.        .+...|.   ....-..++|  ++.... +|.++|.
T Consensus        34 aE~LMRSRYsAfv~~~~dYL~~T~hp~~-----r~~--------~~~~~~~---~~~~Wl~LeI--~~~~~~~~~~g~Ve   95 (129)
T PRK04233         34 AETLMRARYSAYVRRDADYLLASWHPST-----RPA--------ELSLDEG---GRTTWLGLTV--QRTLETGADTAEVV   95 (129)
T ss_pred             HHHHHHHHHHHHHhCccchhhhccCccc-----Cch--------hhhcCcc---cCCEEeeeEE--EEccCCCCceEEEE
Confidence            4567889999999999999888885552     111        2222121   1111112333  333332 4788888


Q ss_pred             EEeeeEeCCC---ceEEEEEEEEeCCeEEEE
Q 022429          250 MKTYIDIDTG---PFNMTNVFEFHNGQWYMV  277 (297)
Q Consensus       250 ~~e~v~~~~g---~lraT~VfrR~dG~Wrlv  277 (297)
                      -......+++   .++=..-|+|++|+|+.+
T Consensus        96 F~A~y~~~~~~~~~~hE~S~F~r~~g~W~Yv  126 (129)
T PRK04233         96 FLARYRIGGGSAVRMTEHSRFVREDGRWYYL  126 (129)
T ss_pred             EEEEEEcCCCceeEEEEeeeEEEECCEEEEe
Confidence            8887764433   356678999999999875

>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.62  E-value=1.2  Score=37.25  Aligned_cols=97  Identities=12%  Similarity=0.214  Sum_probs=70.3

Q ss_pred             HHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEeeeEeC
Q 022429          178 FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDID  257 (297)
Q Consensus       178 Fy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~v~~~  257 (297)
                      +..+|++|-.+.-.+.+-|. +.  =|. ...-.|++.+.+-+..+|.-.+  +.+.+-+++...||+.+++....+..+
T Consensus        15 y~~~~~~g~veka~a~~vd~-Yi--QHn-p~vpdGk~~fv~fFt~ffk~~P--~~~~kiVr~iadGdLV~vh~hqt~~~p   88 (129)
T COG4922          15 YRTLFEAGEVEKADAYLVDR-YI--QHN-PMVPDGKDGFVRFFTEFFKEKP--RISTKIVRVIADGDLVTVHYHQTVSEP   88 (129)
T ss_pred             HHHHHHCCCHHHhhhhhhhH-HH--hcC-CCCCCchHHHHHHHHHHHHhCc--cccceeeEEeccCCEEEEEEeeeeCCC
Confidence            44577778888888887733 22  243 3356799999999999997653  467788888999999999888877643


Q ss_pred             CC-ceEEEEEEEEeCCeEEEEEEecC
Q 022429          258 TG-PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       258 ~g-~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      |. ....+..||-.+|  +|+-|=.+
T Consensus        89 g~~~~v~~DtfR~ddg--kivEHWDv  112 (129)
T COG4922          89 GSYTTVTFDTFRIDDG--KIVEHWDV  112 (129)
T ss_pred             CcceeEEEEEEEeeCC--ceeeccch
Confidence            43 3567788988888  77655433

>PF12707 DUF3804: Protein of unknown function (DUF3804); InterPro: IPR024525 Structural alignments indicate that this family of functionally uncharacterised proteins carry an NTF2-fold with a hydrophobic cavity

Probab=93.61  E-value=1.6  Score=36.51  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccC--CceeeecCCCCCCCCHHHHHHHHHHHhccCCCc-e-eEEEE-eEEEE-
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNA--DYVKCIHASGELFSGYNSVIQSWQIAFNWEQGV-D-FQVQD-VRARV-  241 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWadd--d~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~-~-vei~d-l~V~v-  241 (297)
                      .++|.++++.|..      .+.|..+..+.  .+...+.|.|.++.     .++++.++..+.-+ + -++.. .+..+ 
T Consensus         3 ~~~i~~li~~fa~------~~~~~sFl~~N~T~DFLfIRPSGNPI~-----a~G~~~M~~s~Dvv~e~sEl~kIhrlE~l   71 (128)
T PF12707_consen    3 KQEIESLIEEFAN------REQMKSFLIDNATPDFLFIRPSGNPID-----AKGFEGMMDSGDVVQESSELIKIHRLEFL   71 (128)
T ss_dssp             HHHHHHHHHHHSS------TTTTTTHHHHHB-TT--EE-TTS-EE------HHHHHHHHTSSSEEEEEEEEEEEEEEEES
T ss_pred             HHHHHHHHHHhhC------HHHhhhhhhcCCCcceEEEcCCCCccc-----hhHHHHhhccCceeeeehheeeeeeEEec
Confidence            4567777776643      33344444332  23556889887775     24566666444211 1 22222 23456 


Q ss_pred             eCCEEEE--EEEeeeEeCC----CceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          242 LTDIAWV--TMKTYIDIDT----GPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       242 ~gDvAvv--~~~e~v~~~~----g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      .+|+|+.  +..+.+.-.|    ..-.+|.+|.|.||.|++.--|-|..
T Consensus        72 ~~~~a~~~ftl~~~FsYKG~~NdDl~~~T~IFKKvdg~Wk~~WmqRSsG  120 (128)
T PF12707_consen   72 SDDWAMCAFTLGEKFSYKGTPNDDLSTYTSIFKKVDGVWKISWMQRSSG  120 (128)
T ss_dssp             SSSEEEEEEEEEEEEEETTEEEEEB-EEEEEEEEETTEEEEEEEEE--S
T ss_pred             CCCeEEEEEEecceeEecCCcCCchhHHHHHHhhcCCeEEEEEEeeccC
Confidence            4556554  4556654333    33589999999999999999998754

Family members also contain two highly conserved tryptophan residues toward their C-terminal ends.; PDB: 3HZP_A.

>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.51  E-value=0.42  Score=39.73  Aligned_cols=108  Identities=15%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             HHHHHHHH---HHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE-eCCE
Q 022429          170 AVVNVNAE---FFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV-LTDI  245 (297)
Q Consensus       170 aI~aa~~a---Fy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v-~gDv  245 (297)
                      +|.-+..+   |..+-.++-+|++++-++.|  .+++-|+|.. -.++++.+.++.--...++..+.+++++... ..|.
T Consensus         8 EiihaH~ai~dWl~~~~adtldal~arfaed--ftMitP~Gvi-LD~~Alg~~frs~racrpGl~I~ie~i~l~a~~~dg   84 (130)
T COG4460           8 EIIHAHRAIVDWLVAARADTLDALRARFAED--FTMITPSGVI-LDRDALGDHFRSSRACRPGLAISIEDIRLGAQTEDG   84 (130)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHhcC--ceEecCCceE-eccHHHHHHHHhccCCCCCeEEEEecccccccCCCc
Confidence            44444444   44444455677777778777  6789998854 4699999987766666678889999988774 5668


Q ss_pred             EEEEEEeee-EeCC--Cce-EEEEEEEEe-CC--eEEEEEEecC
Q 022429          246 AWVTMKTYI-DIDT--GPF-NMTNVFEFH-NG--QWYMVHHHSS  282 (297)
Q Consensus       246 Avv~~~e~v-~~~~--g~l-raT~VfrR~-dG--~WrlvhhHaS  282 (297)
                      |++.+.|.- ...+  .+. ..|.+..|. .|  .||  |-|.+
T Consensus        85 a~l~YrE~Q~~a~g~se~~r~stv~l~r~~~grv~WR--HLhET  126 (130)
T COG4460          85 AVLLYREAQLRAGGHSERQRSSTVTLSRSAPGRVEWR--HLHET  126 (130)
T ss_pred             eeeeehHhhhhccCccceeeeeEEEEeecCCCceEee--ehhhh
Confidence            888888764 3222  223 467788886 45  466  55543

>PRK01842 hypothetical protein; Provisional

Probab=92.51  E-value=1.1  Score=38.99  Aligned_cols=92  Identities=11%  Similarity=0.155  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      +++..+.|.||..||++-+.+-|.++-     .+..  + ..+++. .|  --.|.   .++|..... ..++.++|...
T Consensus        50 E~LMRSRYSAy~l~~~dYL~~T~hP~~-----r~~~--~-~~~~~~-~~--~~~Wl---gLeI~~~~~-~~~~~G~VeF~  114 (149)
T PRK01842         50 LELMRSRYSAYVLGATDYLRATWDPST-----CPAD--L-DADPAA-AD--APRWL---GLAIKRHAQ-LDATHAEVEFV  114 (149)
T ss_pred             HHHHHHHHHHHHhcccchhhhccCccc-----Cccc--c-Chhhhh-cc--CCEec---ceEEEEccC-CCCceEEEEEE
Confidence            467788999999999999999986662     1111  1 122222 22  11221   233322221 23468888888


Q ss_pred             eeeEeCCC--ceEEEEEEEEe-CCeEEEEE
Q 022429          252 TYIDIDTG--PFNMTNVFEFH-NGQWYMVH  278 (297)
Q Consensus       252 e~v~~~~g--~lraT~VfrR~-dG~Wrlvh  278 (297)
                      .....+|.  .++=+.-|+|+ +|+|+.+-
T Consensus       115 A~y~~~g~~~~lhErS~F~r~~~G~W~YvD  144 (149)
T PRK01842        115 ARYKVGGRAHRLHETSRFVRDEQGRWRYVD  144 (149)
T ss_pred             EEEecCCCeEEEEEeeeeEECCCCeEEEeC
Confidence            77754333  36668899997 89998764

>PF13013 F-box-like_2: F-box-like domain

Probab=92.31  E-value=0.091  Score=43.29  Aligned_cols=33  Identities=27%  Similarity=0.245  Sum_probs=29.6

Q ss_pred             hhhcccHHHHHHHhcCCChhhHhhhhccChHHH
Q 022429           99 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMR  131 (297)
Q Consensus        99 ~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~  131 (297)
                      -+..||.||+..||.|++..+|+.++.+|+.++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r   53 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYR   53 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            467799999999999999999999999999443

>PRK02250 hypothetical protein; Provisional

Probab=91.11  E-value=1.2  Score=39.25  Aligned_cols=95  Identities=13%  Similarity=0.186  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      .+++..+.|-|+.-||++-+.+-|.++         -......+.+. .|. ...|   ..++|.+..-...++.++|+.
T Consensus        29 pE~LMRSRYsAyv~g~~~Yl~~T~hP~---------~r~~~~~e~i~-~~~-~~~w---~~LeI~~~~~g~~~~~g~VeF   94 (166)
T PRK02250         29 PEQLMRSRYSAHVLGLVDYVVETYHPS---------CNAEEQREGIA-ESI-HSDW---LKLEVIKTEAGSTPNEGFVEF   94 (166)
T ss_pred             hhhcchhHhHHHHhcccceeecccCcc---------cCChhhHHHHh-hhh-hcee---eccEEEEecCCCCCceEEEEE
Confidence            456788999999999988777666444         21111122222 221 1122   233333322223457899998


Q ss_pred             EeeeEeCCC--ceEEEEEEEEeCCeEEEEEE
Q 022429          251 KTYIDIDTG--PFNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       251 ~e~v~~~~g--~lraT~VfrR~dG~Wrlvhh  279 (297)
                      ..+...+|.  .++=..-|+|++|+|+.+--
T Consensus        95 ~A~y~~~g~~~~~~E~S~F~r~~g~W~Yvdg  125 (166)
T PRK02250         95 KAYFDEEGKRYCLEERSRFLKENGLWYYIDG  125 (166)
T ss_pred             EEEEecCCCEEEEEEEEEEEeeCCEEEecCC
Confidence            888764443  35667789999999998863

>COG4994 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.29  E-value=0.33  Score=39.99  Aligned_cols=24  Identities=21%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             eEEEEEEEEeCCeEEEEEEecCCC
Q 022429          261 FNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       261 lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      .+-.++|++.+|+|+|+.||.+.+
T Consensus        95 t~Rs~IW~~~~g~WK~vfHQGT~I  118 (120)
T COG4994          95 TRRSTIWRRTAGGWKIVFHQGTVI  118 (120)
T ss_pred             eeeeeeeeeeCCcEEEEEecceEE
Confidence            455689999999999999998764

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=89.15  E-value=0.32  Score=48.11  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=33.2

Q ss_pred             hhcccHHHHHHHhcCC-ChhhHhhhhccChHHHHHcCC
Q 022429          100 MEQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKAAND  136 (297)
Q Consensus       100 l~~LP~Eil~~IlsyL-d~~sL~~~s~vcr~~~~~a~d  136 (297)
                      ..+||+|||..|...| ...|+.|...|||.|+..+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            5679999999999999 788999999999999977553

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=88.20  E-value=0.39  Score=37.98  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=24.0

Q ss_pred             cchhhcccHHHHHHHhcCCChhhHhhh
Q 022429           97 ASMMEQLVPEITTHALSYLDYPSLCRL  123 (297)
Q Consensus        97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~  123 (297)
                      .+.+..||.||-.+||+||+-.||..+
T Consensus        69 ~~~w~~LP~EIk~~Il~~L~~~dL~~l   95 (97)
T PF09372_consen   69 NNYWNILPIEIKYKILEYLSNKDLKKL   95 (97)
T ss_pred             CCchhhCCHHHHHHHHHcCCHHHHHHH
Confidence            367888999999999999999999764

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>PF02982 Scytalone_dh: Scytalone dehydratase; InterPro: IPR004235 Scytalone dehydratase is a member of the group of enzymes involved in fungal melanin biosynthesis

Probab=81.78  E-value=1.8  Score=37.87  Aligned_cols=114  Identities=8%  Similarity=0.002  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceee--ecC-CCCCCCCHHHHHHHHH--HHhccCCCc--eeEEEEe
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKC--IHA-SGELFSGYNSVIQSWQ--IAFNWEQGV--DFQVQDV  237 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~c--vhP-gg~~l~Gr~aVr~sW~--~if~~~~~~--~vei~dl  237 (297)
                      |...-++.++.-.|.+.+.++|-++|.++.++...+=+  +.+ -.+.. -.+...+-|-  ..+.+. .+  +.-+...
T Consensus         4 f~Dyl~~~~~~feWAdsYD~KDW~RL~~~lAPtl~vDY~~v~~~~we~m-~a~eFvam~s~~~~LGd~-~lkTQHllGa~   81 (160)
T PF02982_consen    4 FEDYLGCQAAAFEWADSYDTKDWDRLRKILAPTLRVDYRSVLGKLWEAM-PADEFVAMASSPHFLGDP-LLKTQHLLGAS   81 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-HHHHHTTEEEEEEEEEHHHHSEEEEEE-EHHHHHHHHTSTTTTT-T-TEEE--EEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhccccHHHHHHhhCCeEEEEHHHhhhhHHhhC-CHHHHHHHHcCccccCCc-chhheeecccc
Confidence            55566788889999999999999999999999854311  111 11111 1334444331  122222 11  1223332


Q ss_pred             EE-EEeCCEEEEEEEeeeEe----CC----------CceEEEEEEEEeCCeEEEEEEe
Q 022429          238 RA-RVLTDIAWVTMKTYIDI----DT----------GPFNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       238 ~V-~v~gDvAvv~~~e~v~~----~~----------g~lraT~VfrR~dG~WrlvhhH  280 (297)
                      .. .++++-.++.-.-++.-    ++          +.-..|.-|+|.||.||+.---
T Consensus        82 ~we~vsd~eiig~hQlRaaHqry~D~~~~~V~~kGh~h~~~~h~Y~KvdG~WK~agl~  139 (160)
T PF02982_consen   82 KWEKVSDTEIIGHHQLRAAHQRYTDDSLTEVKAKGHGHGTNTHWYRKVDGVWKFAGLK  139 (160)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEESSTT--SEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEecCCEEEEEEEEEeeeeeeeCCCccEEEeeeccceeEEEEEEEeCCEEEEeeec
Confidence            22 24555555544433321    21          1235688999999999997654

It was first identified in a phytopathogenic fungus, Magnaporthe grisea (Rice blast fungus), which causes rice blast disease. Scytalone dehydratase is a molecular target of inhibitor design efforts aimed at protecting rice plants from fungal disease [, ].; GO: 0030411 scytalone dehydratase activity, 0006582 melanin metabolic process; PDB: 4STD_A 3STD_A 6STD_A 7STD_C 1STD_A 5STD_C 1IDP_B 2STD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
3cnx_A	170	Uncharacterized protein; putative dehydratase, NTF	6e-33
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	3e-32
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	1e-16
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-08
2ux0_A	143	Calcium-calmodulin dependent protein kinase (CAM I	3e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	7e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	7e-05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-04
2r4i_A	123	Uncharacterized protein; NTF2-like protein, struct	5e-04
3h51_A	156	Putative calcium/calmodulin dependent protein KIN	7e-04

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17 Length = 170

 Score =  118 bits (295), Expect = 6e-33
 Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 29/158 (18%)

Query: 165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWL---------------NADYVKCIHASGEL 209
                 V   N  F+  +       +S  WL               +A  V C+H    +
Sbjct: 8   DTDVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPV 67

Query: 210 FSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNM------ 263
            SG   V++S+ +     + + F + DV   V  D A VT    I     P +       
Sbjct: 68  LSGRGEVLRSYALIMANTEYIQFFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGP 127

Query: 264 --------TNVFEFHNGQWYMVHHHSSVMLVDGEVEQQ 293
                   TNVF      W +  HH+S +L +   E+ 
Sbjct: 128 LVGQLVVATNVFRRTPDGWKLWSHHASPVLAETGAEEG 165

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259} Length = 144

 Score =  115 bits (289), Expect = 3e-32
 Identities = 31/140 (22%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFN 225
                       F+     RSL  M   W   D+V CIH      +G  +V   W+  F 
Sbjct: 5   PVFPTPEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFG 64

Query: 226 WEQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTGP-----FNMTNVFEFHNGQWYMVHHH 280
                  QV+ V      D     +  ++ I            TNV+      W MV HH
Sbjct: 65  AAGRFRLQVKAVHEIRQADHVIRIVDEFLTIGDETAPRPAILATNVYRREADGWRMVLHH 124

Query: 281 SSVM----LVDGEVEQQVVH 296
           +S +        +    V H
Sbjct: 125 ASPLQVGAKAGADTPPVVFH 144

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440} Length = 142

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 7/126 (5%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFN 225
           AA   +  +   +   +R+R +P +   +   D V         F G ++    W++   
Sbjct: 5   AAESEIRQLIERWMQAVRDRDIPGIIAPY-ADDIVAFDAIQALQFKGKSAYTAHWEMCMG 63

Query: 226 W-EQGVDFQVQDVRARVLTDIAWVTMKTYIDIDTG-----PFNMTNVFEFHNGQWYMVHH 279
                + F++  +      D+A                      T  +    GQW ++H 
Sbjct: 64  MCTGPMVFELAQLTVHAAGDLALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHE 123

Query: 280 HSSVML 285
           H S   
Sbjct: 124 HWSAPF 129

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 97  ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF 148
           AS + +L  ++  + LS+L    LC+L  TN    +   D   W+    +D 
Sbjct: 2   ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53

>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A* Length = 143

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 228 QGVDFQVQDVRARVLTD----IAWVTMKTYIDID----TGPFNMTNVFEFHNGQWYMVHH 279
           + +   + +    V+ +    IA++ +  YID      T     T V+   +G+W  VH+
Sbjct: 73  KPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHY 132

Query: 280 HSSVM 284
           H S  
Sbjct: 133 HCSGA 137

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 92  ERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL 143
           E   G S  + L  E+     S L  P L ++S       + A+D++ W+ L
Sbjct: 2   ENFPGVSW-DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 100 MEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNA-WKALYHKDFTLEQDSVIPV 158
           +  L  EI+    +YL +  +      +    K      + WK L   +  +       +
Sbjct: 15  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSL 74

Query: 159 NG 160
           N 
Sbjct: 75  NL 76

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 102 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVI----- 156
            L  E+  + LS+L+   L + + T    R  A D+  W+    ++   E   +      
Sbjct: 21  LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVI 80

Query: 157 ----PVNGWKAYYAATRAVVNV 174
                 + WK+ Y     +   
Sbjct: 81  KPGFIHSPWKSAYIRQHRIDTN 102

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 102 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDS 154
           + +  I  + LSYLD  SLC   +      +  +D   WK L  +    +   
Sbjct: 17  RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLW 69

>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15 Length = 123

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 15/123 (12%)

Query: 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFS--GYNSVIQSWQIAFN 225
              +++   +    I+   + ++       D +  I  SGE  +     +   S +IA  
Sbjct: 5   RDVILDCEKKLLTAIQNNDVESLEVLL--HDDLLFIIPSGETVTKETDIAAYSSGKIALR 62

Query: 226 WEQGVDFQVQDVRARVLTDIAWVTMKTYIDID------TGPFNMTNVFEFHNGQWYMVHH 279
                     D   R++ D   V++   I  +         F    V++  +G W ++  
Sbjct: 63  -----AVVPSDYIIRIIHDTVVVSVNIEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAG 117

Query: 280 HSS 282
             +
Sbjct: 118 SCT 120

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV} Length = 156

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 204 HASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYI--------D 255
             S E+ +    +   +++    +       + VR  +L D + V    Y          
Sbjct: 54  TVSNEVRASREQIENYFEMFLTKKPKGVINYRTVR--LLDDDSAVDAGVYTFTLTDKNGK 111

Query: 256 IDTGPFNMTNVFEFHNGQWYMVHHHSSVM 284
                   T V+E  +G+W +++HHSS M
Sbjct: 112 KSDVQARYTFVYEKRDGKWLIINHHSSAM 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	99.95
3cnx_A	170	Uncharacterized protein; putative dehydratase, NTF	99.93
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	99.87
2ux0_A	143	Calcium-calmodulin dependent protein kinase (CAM I	99.83
3soy_A	145	NTF2-like superfamily protein; structural genomics	99.81
3b7c_A	122	Uncharacterized protein; NTF-2 like protein, struc	99.8
2rcd_A	129	Uncharacterized protein; structural genomics, join	99.79
3bb9_A	148	Putative orphan protein; structural genomics, join	99.78
3h51_A	156	Putative calcium/calmodulin dependent protein KIN	99.76
3hx8_A	129	MLR2180 protein, putative ketosteroid isomerase; s	99.75
4i4k_A	143	Uncharacterized protein SGCJ; structural genomics,	99.73
2owp_A	129	Hypothetical protein BXE_B1374; cystatin-like fold	99.72
2r4i_A	123	Uncharacterized protein; NTF2-like protein, struct	99.69
3fsd_A	134	NTF2-like protein of unknown function in nutrient;	99.68
3rob_A	139	Uncharacterized conserved protein; structural geno	99.66
2gxf_A	142	Hypothetical protein YYBH; alpha-beta protein., st	99.65
2f86_B	143	Hypothetical protein K11E8.1D; UNC-43, oligomeriza	99.64
3d9r_A	135	Ketosteroid isomerase-like protein; YP_049581.1, s	99.62
3cu3_A	172	Domain of unknown function with A cystatin-like F;	99.61
3gzr_A	146	Uncharacterized protein with A NTF2-like fold; str	99.6
3ke7_A	134	Putative ketosteroid isomerase; structural genomic	99.58
3ksp_A	129	Calcium/calmodulin-dependent kinase II associatio;	99.53
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.42
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.29
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.27
2chc_A	170	Protein RV3472; hypothetical protein; 1.69A {Mycob	99.23
3b8l_A	163	Uncharacterized protein; putative aromatic ring hy	99.22
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.21
2rfr_A	155	Uncharacterized protein; structural genomics, join	99.19
1tp6_A	128	Hypothetical protein PA1314; structural genomics,	99.15
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.15
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.12
2k54_A	123	Protein ATU0742; protein of unknown function, stru	99.03
3a76_A	176	Gamma-hexachlorocyclohexane dehydrochlorinase; bar	99.03
2a15_A	139	Hypothetical protein RV0760C; beta-alpha-barrel, s	98.97
3ef8_A	150	Putative scyalone dehydratase; YP_496742.1, struct	98.94
2rgq_A	144	Domain of unknown function with A cystatin-like F;	98.86
1oh0_A	131	Steroid delta-isomerase; ketosteroid isomerase, KS	98.81
1ohp_A	125	Steroid delta-isomerase; inhibitor; HET: ESR; 1.53	98.76
1nww_A	149	Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R	98.75
4h3u_A	158	Hypothetical protein; structural genomics, PSI-bio	98.74
3f14_A	112	Uncharacterized NTF2-like protein; YP_680363.1, NT	98.73
3ejv_A	179	Uncharacterized protein with cystatin-like fold; s	98.71
3ebt_A	132	Uncharacterized NTF2-like protein; structural geno	98.68
3ff2_A	117	Uncharacterized cystatin fold protein (YP_497570.	98.68
3blz_A	128	NTF2-like protein of unknown function; structural	98.63
3g8z_A	148	Protein of unknown function with cystatin-like FO;	98.62
3k0z_A	159	Putative polyketide cyclase; structural genomics,	98.61
3dm8_A	143	Uncharacterized protein RPA4348; siras, putative i	98.61
2bng_A	149	MB2760; epoxide hydrolase, limonene, hydrolase, st	98.6
1tuh_A	156	BAL32A, hypothetical protein EGC068; unknown funct	98.57
3duk_A	125	NTF2-like protein of unknown function; structural	98.56
1s5a_A	150	Hypothetical protein YESE; structural genomics, PS	98.54
2gex_A	152	SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St	98.54
3hk4_A	136	MLR7391 protein; NTF2-like protein, structural gen	98.54
3dmc_A	134	NTF2-like protein; structural genomics, joint cent	98.53
3fh1_A	129	Uncharacterized NTF2-like protein; structural geno	98.51
3f7x_A	151	Putative polyketide cyclase; structural genomics,	98.5
2gey_A	158	ACLR protein; alpha+beta barrel, oxidoreductase; H	98.49
3g16_A	156	Uncharacterized protein with cystatin-like fold; Y	98.48
3i0y_A	140	Putative polyketide cyclase; cystatin-like fold, s	98.47
4gb5_A	159	Uncharacterized protein; structural genomics, PSI-	98.46
1sjw_A	144	Nogalonic acid methyl ester cyclase; anthracycline	98.45
3h3h_A	122	Uncharacterized snoal-like protein; structural gen	98.45
3fgy_A	135	Uncharacterized NTF2-like protein; structural geno	98.45
3fka_A	120	Uncharacterized NTF-2 like protein; structural gen	98.45
3ec9_A	140	Uncharacterized NTF2-like protein; structural geno	98.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.41
3en8_A	128	Uncharacterized NTF-2 like protein; YP_553245.1, N	98.4
3g0k_A	148	Putative membrane protein; snoal-like polyketide c	98.36
2f99_A	153	Aklanonic acid methyl ester cyclase, AKNH; anthrac	98.31
3f40_A	114	Uncharacterized NTF2-like protein; YP_677363.1, NT	98.29
3grd_A	134	Uncharacterized NTF2-superfamily protein; NP_97724	98.28
3kkg_A	146	Putative snoal-like polyketide cyclase; structural	98.23
3ehc_A	128	Snoal-like polyketide cyclase; structural genomics	98.21
3f8h_A	150	Putative polyketide cyclase; structural genomics,	98.16
1z1s_A	163	Hypothetical protein PA3332; beta barrel, conserve	98.14
3mso_A	143	Steroid delta-isomerase; structural genomics, join	98.11
3f9s_A	146	Putative polyketide cyclase; structural genomics,	98.04
3er7_A	131	Uncharacterized NTF2-like protein; YP_001812677.1,	97.98
3rga_A	283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	97.97
3rga_A	283	Epoxide hydrolase; NTF2-like, epoxide-opening cycl	97.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.85
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	97.8
3f8x_A	148	Putative delta-5-3-ketosteroid isomerase; structur	97.8
3flj_A	155	Uncharacterized protein conserved in bacteria WIT	97.74
3dxo_A	121	Uncharacterized snoal-like protein; putative isome	97.68
3lyg_A	120	NTF2-like protein of unknown function; structural	97.6
2b1x_B	172	Naphthalene dioxygenase small subunit; rieske non-	97.55
1idp_A	172	Scytalone dehydratase; lyase, melanine biosynthesi	97.46
2gbw_B	174	Biphenyl 2,3-dioxygenase beta subunit; rieske oxyg	97.42
3eby_A	163	Beta subunit of A putative aromatic-ring-hydroxyl	97.38
3jum_A	185	Phenazine biosynthesis protein A/B; chirality, dru	97.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.08
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	97.05
3hzp_A	131	NTF2-like protein of unknown function; YP_291699.1	96.85
3ff0_A	163	Phenazine biosynthesis protein PHZB 2; cystatin-li	96.5
1uli_B	187	Biphenyl dioxygenase small subunit; alpha3 BETA3 h	96.35
1wql_B	186	Ethylbenzene dioxygenase small subunit; biphenyl d	96.05
3mg1_A	323	OCP, orange carotenoid protein; carotenoid binding	95.96
3e99_A	164	Benzoate 1,2-dioxygenase beta subunit; structural	95.66
2jq5_A	128	SEC-C motif; structural genomics, PSI-2, structure	95.53
3gzx_B	186	Biphenyl dioxygenase subunit beta; rieskie, non-he	94.62
3ujm_A	120	Rasputin; NTF2-like fold, RAS signaling, signaling	94.61
2bmo_B	194	Oxygenase-beta NBDO; nitrobenzene dioxygenase, nit	94.44
2i9w_A	184	Hypothetical protein; cystatin-like fold, SEC-C mo	92.6
1gy6_A	127	Nuclear transport factor 2; 1.6A {Rattus norvegicu	90.72
1jkg_A	140	P15; NTF2-like domain, transport protein; 1.90A {H	90.04
1zo2_A	129	NTF2, nuclear transport factor 2; structural genom	89.81
3nv0_B	154	NTF2-related export protein; NTF2-like domain, bet	89.5
1gy7_A	125	Nuclear transport factor 2; protein transport; 1.6	88.89
1jkg_B	250	TAP; NTF2-like domain, transport protein; 1.90A {H	85.47
2qiy_A	154	UBP3-associated protein BRE5; deubiquitylation, ub	84.7
3k7c_A	114	Putative NTF2-like transpeptidase; structural geno	84.04
3q90_A	140	RAS GTPase-activating protein-binding protein 1; s	82.71
3gzb_A	154	Putative snoal-like polyketide cyclase; YP_0011826	81.12

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=99.95  E-value=1.2e-27  Score=201.36  Aligned_cols=115  Identities=26%  Similarity=0.432  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      .+.+++++||+||++||+++|+++|++|+.++|+||+++.+.|+++|+++|+.+|+.+++++++++++++...||+|+++
T Consensus         9 ~~~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~gd~A~v~   88 (144)
T 3gwr_A            9 TPEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQADHVIRI   88 (144)
T ss_dssp             SHHHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEECSSEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEecCCEEEEE
Confidence            47889999999999999999999999998899999999999999999999999998766788999999999999999999


Q ss_pred             EEeeeEeC--C---CceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          250 MKTYIDID--T---GPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       250 ~~e~v~~~--~---g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      +.+++...  +   ..+++|+||||++|+|||+|||+||.
T Consensus        89 ~~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S~~  128 (144)
T 3gwr_A           89 VDEFLTIGDETAPRPAILATNVYRREADGWRMVLHHASPL  128 (144)
T ss_dssp             EEEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred             EEEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecCCC
Confidence            99999862  2   35899999999999999999999998

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17

Probab=99.93  E-value=4.4e-26  Score=198.32  Aligned_cols=124  Identities=27%  Similarity=0.448  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCc---------------eeeecCCCCCCCCHHHHHHHHHHHhccCCCce
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADY---------------VKCIHASGELFSGYNSVIQSWQIAFNWEQGVD  231 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~---------------V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~  231 (297)
                      ...+|++++++||+||++||+++|+++|++++.               ++|+||+++.+.|+++|+++|+.+|.+.+.+.
T Consensus        10 d~~~I~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~~~l~G~~~I~~~~~~~f~~~~~~~   89 (170)
T 3cnx_A           10 DVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMANTEYIQ   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHHTCSEEE
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCCccccCHHHHHHHHHHHHccCCeeE
Confidence            457899999999999999999999999999976               79999999899999999999999998775678


Q ss_pred             eEEEEeEEEEeCCEEEEEEEeeeEe--CC-------Cc-----eEEEEEEEEeCCeEEEEEEecCCCCCCCcc
Q 022429          232 FQVQDVRARVLTDIAWVTMKTYIDI--DT-------GP-----FNMTNVFEFHNGQWYMVHHHSSVMLVDGEV  290 (297)
Q Consensus       232 vei~dl~V~v~gDvAvv~~~e~v~~--~~-------g~-----lraT~VfrR~dG~WrlvhhHaSp~~~~~~~  290 (297)
                      +++.+++|.+.||+|++++.+++..  .+       ++     +|+|+||||++|+|||+|||+||+..+.+.
T Consensus        90 ~~~~dv~v~~~gD~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~ggWriv~hH~Sp~~~~~~~  162 (170)
T 3cnx_A           90 FFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVLAETGA  162 (170)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEEEECCC----
T ss_pred             EEEEEEEEEEeCCEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECCEEEEEEEecCCCCCCCCc
Confidence            8899999999999999999998864  11       21     679999999999999999999998766553

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}

Probab=99.87  E-value=4.7e-21  Score=157.27  Aligned_cols=121  Identities=15%  Similarity=0.282  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-CCCCCHHHHHHHHHHHhccCC-CceeEEEEeEEEEeCC
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-ELFSGYNSVIQSWQIAFNWEQ-GVDFQVQDVRARVLTD  244 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-~~l~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~v~gD  244 (297)
                      ...+|++++++|++|+++||+++++++|++|  +++++|++ ..+.|++++++.|+.+|+..+ +..+++.+++|.+.||
T Consensus         6 ~~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D--~v~~~~~~~~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~gd   83 (142)
T 3f7s_A            6 AESEIRQLIERWMQAVRDRDIPGIIAPYADD--IVAFDAIQALQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGD   83 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEE--EEEECSSSSSCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEETT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHhhcCCC--EEEecCCCCccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcCC
Confidence            5678999999999999999999999999998  45566644 345799999999999997643 5688999999999999


Q ss_pred             EEEEEEEeeeEeC--CC---ceEEEEEEEEeCCeEEEEEEecCCCCCCCc
Q 022429          245 IAWVTMKTYIDID--TG---PFNMTNVFEFHNGQWYMVHHHSSVMLVDGE  289 (297)
Q Consensus       245 vAvv~~~e~v~~~--~g---~lraT~VfrR~dG~WrlvhhHaSp~~~~~~  289 (297)
                      +|++++..++...  ++   ..|+|+||+|++|+|||+|+|.|.|.++..
T Consensus        84 ~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g~W~ivh~H~S~p~~~~~  133 (142)
T 3f7s_A           84 LALAHWLNRCGPGDDESQCGFMRATVGYRRQGGQWQVIHEHWSAPFDMET  133 (142)
T ss_dssp             EEEEEEEEEEEESSCGGGCEEEEEEEEEEEETTEEEEEEEEEECCBCTTT
T ss_pred             EEEEEEEEEEeeecCCCcceeeEEEEEEEEeCCEEEEEEEeeccCcCCCC
Confidence            9999999888652  22   479999999999999999999999877753

>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*

Probab=99.83  E-value=5.5e-20  Score=151.05  Aligned_cols=123  Identities=14%  Similarity=0.155  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCC-CceeEEEEeEEEEeC
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQ-GVDFQVQDVRARVLT  243 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~v~g  243 (297)
                      -...++|++++++|++|+++||+++++++|++|...++.+|.|..+.|++++++.|+.+|.... ...+++.+++|.+.|
T Consensus         9 ~~~~~~I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~g   88 (143)
T 2ux0_A            9 KVRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIG   88 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEec
Confidence            3456789999999999999999999999999885443333446688999999999999986543 567889999999999


Q ss_pred             CEEEEEEEeeeEe--C--CC----ceEEEEEEEEeCCeEEEEEEecCCCCCC
Q 022429          244 DIAWVTMKTYIDI--D--TG----PFNMTNVFEFHNGQWYMVHHHSSVMLVD  287 (297)
Q Consensus       244 DvAvv~~~e~v~~--~--~g----~lraT~VfrR~dG~WrlvhhHaSp~~~~  287 (297)
                      |.+++.+...+..  +  |.    ..|.|+||+|.+|+|||+|||.|+++.+
T Consensus        89 d~aav~~~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g~Wkivh~H~S~~~~~  140 (143)
T 2ux0_A           89 EDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCSGAPAA  140 (143)
T ss_dssp             TTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEECCC--
T ss_pred             CcEEEEEEeEeeeeecCCCCeeeeeEEEEEEEEEECCEEEEEEEeeCCCCCC
Confidence            8655554433332  2  22    2699999999999999999999988643

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}

Probab=99.81  E-value=6.9e-20  Score=153.76  Aligned_cols=122  Identities=14%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHH-Hhcc-CCCceeEEEEeE-EEEeC
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQI-AFNW-EQGVDFQVQDVR-ARVLT  243 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~-if~~-~~~~~vei~dl~-V~v~g  243 (297)
                      ...+|++++++|++|+.++|+++|+++|++++.++|++|+| .+.|+++|++.|.. .+.. ....++++.+++ |++.|
T Consensus         8 ~~~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g-~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~g   86 (145)
T 3soy_A            8 VKQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG-HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYG   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE-EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC-cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcC
Confidence            45679999999999999999999999999998899999988 46899999999842 1211 112357788889 89999


Q ss_pred             CEEEEEEEeeeEe---CCC-----ceEEEEEEEEe-CCeEEEEEEecCCCCCCCc
Q 022429          244 DIAWVTMKTYIDI---DTG-----PFNMTNVFEFH-NGQWYMVHHHSSVMLVDGE  289 (297)
Q Consensus       244 DvAvv~~~e~v~~---~~g-----~lraT~VfrR~-dG~WrlvhhHaSp~~~~~~  289 (297)
                      |+|++++..++..   ++|     ..|+|+||+|. +|+|||+|+|.|+++..+.
T Consensus        87 d~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H~S~~~~~~~  141 (145)
T 3soy_A           87 NAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVHYSGPAKTGV  141 (145)
T ss_dssp             TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEEEECCCCCST
T ss_pred             CEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEecCCCCCCcc
Confidence            9999998876643   233     36999999995 5999999999998876654

>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16

Probab=99.80  E-value=1.1e-18  Score=141.00  Aligned_cols=115  Identities=12%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCC-CceeEEEEeEEE-EeCC
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQ-GVDFQVQDVRAR-VLTD  244 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~-v~gD  244 (297)
                      ..++|++++++|++|++++|+++++++|.+++++++++|++ ...|+++|++.|+..|.... ...++++.++++ +.+|
T Consensus         3 ~~~~I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~   81 (122)
T 3b7c_A            3 PTDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNY   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-cccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCCC
Confidence            35689999999999999999999999997766788999876 79999999999999886431 124566666666 4679


Q ss_pred             EEEEEEEeeeEeC-CC-ceEEEEEEEEeCCeEEEEEEecC
Q 022429          245 IAWVTMKTYIDID-TG-PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       245 vAvv~~~e~v~~~-~g-~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      +|++++...+... +. ..++|+||+|.+|+|||+|+|.|
T Consensus        82 ~a~v~~~~~~~~~~~~~~~r~T~v~~k~~g~W~Iv~~H~S  121 (122)
T 3b7c_A           82 AAMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDHSS  121 (122)
T ss_dssp             EEEEEEEEEEECSSCCCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEEEEccCCCCCcEEEEEEEEeCCCEEEEEEecC
Confidence            9999988887643 22 25899999999999999999988

>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18

Probab=99.79  E-value=1.6e-18  Score=140.97  Aligned_cols=113  Identities=12%  Similarity=0.143  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-EEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-IAWV  248 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-vAvv  248 (297)
                      +|.++..+|.+|+.++|+++|+++|++|+.++|++ +++.+.|+++|++ |+..|... +..+++.++.+...|+ +|++
T Consensus        15 ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~-~~~~~~G~~~i~~-~~~~~~~~-~~~~~~~~~~~~~~~~d~A~~   91 (129)
T 2rcd_A           15 DVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYG-AGENLYGIEEIRA-FRLARPSA-GLDRALRNTVITTYGHDMAVA   91 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEE-TTEEEESHHHHHH-HHHHSCCT-TCCCEEEEEEEEEBTTSEEEE
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEEC-CCCccCCHHHHHH-HHHhcCCC-CCceEEEEEEEEEecCcEEEE
Confidence            34444444449999999999999999999899999 5668899999999 99999754 3567777888886665 8998


Q ss_pred             EEEeeeEeCCCceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          249 TMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       249 ~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      .........+..-+.|+||+|.+|+|||+|||.||++
T Consensus        92 ~~~~~~~~~~~~g~~t~v~~r~~~gWrIv~~H~S~~~  128 (129)
T 2rcd_A           92 STEFTRTGSTKIGRQMQTWVKMPEGWRIVAAHVSLMS  128 (129)
T ss_dssp             EEEEECSSCCSCEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             EEEEEEcCCCCceeEEEEEEECCCcEEEEEEecCCCC
Confidence            7766553222335789999999999999999999864

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16

Probab=99.78  E-value=1.2e-18  Score=144.64  Aligned_cols=114  Identities=15%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHH-HHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQ-SWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~-sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      ...++|++++++|++|+++||+++++++|++|  .++++|++. ..|++++++ .|...|.......+++.+++|.+.||
T Consensus        27 ~~~~~i~~~~~~~~~A~~~~D~~~l~~l~a~D--a~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~gd  103 (148)
T 3bb9_A           27 GVDSAAGNVVKQFHAALQMGNEAIVRQSLAAN--VQIYEGGKV-ERSLTEYANHHMLADMAYLKGLTITPKEHQITITGD  103 (148)
T ss_dssp             STTSHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTEE-ECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred             CcHHHHHHHHHHHHHHHHhCCHHHHHHhhCCC--eEEEeCCCc-cCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcCC
Confidence            33578999999999999999999999999988  455677765 889999999 99988864334688899999999999


Q ss_pred             EEEEEEEeeeEe--CCC----ceEEEEEE-EEeCCeEEEEEEecC
Q 022429          245 IAWVTMKTYIDI--DTG----PFNMTNVF-EFHNGQWYMVHHHSS  282 (297)
Q Consensus       245 vAvv~~~e~v~~--~~g----~lraT~Vf-rR~dG~WrlvhhHaS  282 (297)
                      +|++.+...+..  +|.    ..|.|+|| +|++|+|||+|+|.|
T Consensus       104 ~A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~g~WkIvh~H~S  148 (148)
T 3bb9_A          104 IAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS  148 (148)
T ss_dssp             EEEEEEEEEEEECCC--CEEEEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred             EEEEEEEEEEeeeeCCcccccceEEEEEEeEEcCCcEEEEEEEeC
Confidence            999999988764  222    36899999 999999999999987

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}

Probab=99.76  E-value=1.6e-17  Score=139.14  Aligned_cols=119  Identities=16%  Similarity=0.219  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      ...+|++++++|++|++++|+++++++|++|..+  +.| ++..+.|+++|++.|+..+...+...++++++++ +.||+
T Consensus        18 d~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~--~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~-~~gd~   94 (156)
T 3h51_A           18 EAREVAALFDTWNAALATGNPHKVADLYAPDGVL--LPTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRL-LDDDS   94 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEE--ECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE-CSSSE
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEE--ecCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEE-ecCCe
Confidence            5678999999999999999999999999999533  443 3557899999999999999765433455555443 35999


Q ss_pred             EEEEEEeeeEe--CCC-----ceEEEEEEEEeCCeEEEEEEecCCCCCCC
Q 022429          246 AWVTMKTYIDI--DTG-----PFNMTNVFEFHNGQWYMVHHHSSVMLVDG  288 (297)
Q Consensus       246 Avv~~~e~v~~--~~g-----~lraT~VfrR~dG~WrlvhhHaSp~~~~~  288 (297)
                      |++++..++..  .+|     ..++|.||+|++|+|||+|||.|+++...
T Consensus        95 A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~~~  144 (156)
T 3h51_A           95 AVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPEVD  144 (156)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred             EEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCccc
Confidence            99999987764  233     25899999999999999999999875443

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}

Probab=99.75  E-value=4e-17  Score=129.64  Aligned_cols=115  Identities=11%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      ..+|++++++|++|++++|+++++++|++|.  +.++|++..+.|+++|++.|+..+..+ ...++++.+++.+.||+|+
T Consensus         5 ~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da--~~~~~~~~~~~G~~~i~~~~~~~~~~~-~~~~~~~~~~v~~~gd~A~   81 (129)
T 3hx8_A            5 KEAIEAANADFVKAYNSKDAAGVASKYMDDA--AAFPPDMARVDGRQNIQKLWQGAMDMG-ISELKLTTLDVQESGDFAF   81 (129)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECTTSCCEESHHHHHHHHHHHHHTT-CEEEEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCe--EEeCCCCCcccCHHHHHHHHHHHHhCC-CceEEEEEEEEEcCCCEEE
Confidence            5689999999999999999999999999995  336777778899999999999998753 3567888888999999999


Q ss_pred             EEEEeeeEe--CCC-----ceEEEEEEEEe-CCeEEEEEEecCCCC
Q 022429          248 VTMKTYIDI--DTG-----PFNMTNVFEFH-NGQWYMVHHHSSVML  285 (297)
Q Consensus       248 v~~~e~v~~--~~g-----~lraT~VfrR~-dG~WrlvhhHaSp~~  285 (297)
                      +.+..++..  .+|     ..++|.||+|+ ||+|+|+++|.++.+
T Consensus        82 ~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~~~~  127 (129)
T 3hx8_A           82 ESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWNSDP  127 (129)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred             EEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeeccccc
Confidence            999888764  233     25899999999 999999999998753

>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}

Probab=99.73  E-value=5.5e-17  Score=135.06  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEE-EeC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRAR-VLT  243 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~-v~g  243 (297)
                      ....+|++++++|++|++++|+++++++|++|..+  ++|| ..+.|+++|++.|+.+|... ++..++++.+.++ +++
T Consensus        16 ~d~~~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~--~~~g-~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   92 (143)
T 4i4k_A           16 AALAAVAALPARIVAAWADHDADRFADVFAEDGTM--ILPG-LFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGD   92 (143)
T ss_dssp             HHHHHHHTHHHHHHHHHHTTCHHHHHTTEEEEEEE--EETT-EEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHhhcCceE--EeCC-CeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCC
Confidence            45678999999999999999999999999999655  3565 57899999999999999654 3445677777777 588


Q ss_pred             CEEEEEEEeeeEeCC-------CceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          244 DIAWVTMKTYIDIDT-------GPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       244 DvAvv~~~e~v~~~~-------g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      |+|++.....+..+|       ..++.|+||+|++|+|||++||.||.
T Consensus        93 d~A~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~h~S~v  140 (143)
T 4i4k_A           93 GIALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAYQNSPR  140 (143)
T ss_dssp             TEEEEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEEecCCcc
Confidence            999998654443222       22689999999999999999999987

>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18

Probab=99.72  E-value=7.4e-17  Score=133.38  Aligned_cols=117  Identities=14%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-CE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-DI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-Dv  245 (297)
                      ...+|.++..+|++|+.++|++.|+++|++|+.++|+ |+|+.+.|+++|++ |+..+... ....++.+..|+..| |+
T Consensus         9 ~~~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~-~~g~~l~G~~~I~a-~r~~~~~~-~~~~~~~~~~i~~~g~d~   85 (129)
T 2owp_A            9 IVAQVQAAFVEYERALVENDIEAMNALFWHTPETVRY-GIAEVQHGGEAIRA-WRERCEPV-PKSRKLHRTVVTTFGTDF   85 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEE-CSSCEEESHHHHHH-HHHHSCCC-CTTCEEEEEEEEEETTTE
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEe-CCCCccCCHHHHHH-HHHhcCCC-CCceeecccEEEEecCCE
Confidence            3467888999999999999999999999999988888 45778999999999 88777543 234567777888888 69


Q ss_pred             EEEEEEeeeEeCCCceEEEEEEEEeC--CeEEEEEEecCCCCC
Q 022429          246 AWVTMKTYIDIDTGPFNMTNVFEFHN--GQWYMVHHHSSVMLV  286 (297)
Q Consensus       246 Avv~~~e~v~~~~g~lraT~VfrR~d--G~WrlvhhHaSp~~~  286 (297)
                      |++.........+...+.|++|+|.+  ++|||+++|.|++.+
T Consensus        86 A~~~~~~~~~~~~~~gr~t~vw~r~~~~~gWrIv~~H~S~~~~  128 (129)
T 2owp_A           86 ATVSTEFTSDATPLLGRQMQTWARLSPADGWKIVAAHVSLIAM  128 (129)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEECSTTTCEEEEEEEEEEECC
T ss_pred             EEEEEEEEECCCCcceEEEEEEEECCCCCCEEEEEeeecCCCC
Confidence            99876544321111458999999999  999999999999754

>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15

Probab=99.69  E-value=1.8e-16  Score=125.38  Aligned_cols=112  Identities=13%  Similarity=0.241  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      .++|.+++++|++|+.++|++.++++|++|  ++++||+|. ..|++++.+.|+.-.  .....+++.+++|++.||.|+
T Consensus         5 ~~~i~~l~~~~~~A~~~~D~~~l~~l~~~d--~~~~~~~G~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~v~~~g~~a~   79 (123)
T 2r4i_A            5 RDVILDCEKKLLTAIQNNDVESLEVLLHDD--LLFIIPSGE-TVTKETDIAAYSSGK--IALRAVVPSDYIIRIIHDTVV   79 (123)
T ss_dssp             HHHHTHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECTTSC-EECHHHHHHHHHTTC--EEEEEEEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHhhhCcC--eEEECCCCC-CccHHHHHHHHhcCC--eEEEEEeecccEEEEECCEEE
Confidence            367999999999999999999999999987  889999884 557888877765211  123468889999999999887


Q ss_pred             EEEEeeeEe--CC----CceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          248 VTMKTYIDI--DT----GPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       248 v~~~e~v~~--~~----g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      +.+..++..  .+    +..+.|+||+|.+|+|||+|||.||.
T Consensus        80 ~~~~~~~~~~~~g~~~~~~~r~t~vw~r~~g~W~iv~~h~S~~  122 (123)
T 2r4i_A           80 VSVNIEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAGSCTAI  122 (123)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEECCcceeEEEEEEEEEEEeCCeEEEEEEEEEec
Confidence            777544432  22    24688999999999999999999985

>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0

Probab=99.68  E-value=2.4e-16  Score=129.14  Aligned_cols=113  Identities=12%  Similarity=0.211  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-E
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-I  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-v  245 (297)
                      ..++|.+++++|++|+.++|+++++++|++|  ++++||+|... +++++.+.++.-  ......+++.+.+|++.|| +
T Consensus        12 ~~~~I~~l~~~~~~A~~~~D~~~l~~L~~~d--~~~v~~~G~~~-~~~~~l~~~~~g--~~~~~~~~~~~~~v~~~g~d~   86 (134)
T 3fsd_A           12 PADDIAFYEERLRAAMLTGDLKGLETLLADD--LAFVDHTGCVK-TKQTHLEPYRAG--LLKLSRLDLSDAVVRAAGEDG   86 (134)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECTTSCEE-CHHHHHHHHHTT--CEEEEEEEEEEEEEEESSTTE
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHhhcCCC--EEEECCCCcCc-cHHHHHHHHHcC--CceEEEEEEeccEEEEeCCCE
Confidence            3457999999999999999999999999988  78899988654 567666665421  1123468899999999999 9


Q ss_pred             EEEEEEeeeEe--CCC----ceEEEEEEEEeCCe--EEEEEEecCCC
Q 022429          246 AWVTMKTYIDI--DTG----PFNMTNVFEFHNGQ--WYMVHHHSSVM  284 (297)
Q Consensus       246 Avv~~~e~v~~--~~g----~lraT~VfrR~dG~--WrlvhhHaSp~  284 (297)
                      |++++..++..  +|.    .++.|+||+|.+|+  |||++||.||+
T Consensus        87 Avv~~~~~~~~~~~g~~~~~~~~~t~vw~k~~g~~gWriv~~h~S~i  133 (134)
T 3fsd_A           87 RVVVVRAVTAGVYDGEAFTETLRFTRIWRRTQGPAGWKLVAGHCSVI  133 (134)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEeCCcEEEEEEEEEEEEEECCCCccceEeEeEEEec
Confidence            99999988764  332    35899999999999  99999999986

>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}

Probab=99.66  E-value=2.2e-15  Score=125.90  Aligned_cols=114  Identities=13%  Similarity=0.182  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      ....+|++++++|++|+++||+++++++|++|  ++.++++++.+ |++++++.|...+... ....+++...+.+.||+
T Consensus        14 ~de~aI~~l~~~~~~A~~~gD~~~l~al~a~D--~v~~~~g~~~~-Gr~ai~a~~~~~~~~~-~~~~~~~~~~i~v~GD~   89 (139)
T 3rob_A           14 ADELAIRTVQYRWLEATRKFDRQVLSSLMTDD--VVFLTPGRLPF-GKEEFLAACEQNDQRV-IIEASATFEEIVIVEPM   89 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEECTTSCCB-CHHHHHHHHHHHHHHE-EEEEEEEEEEEEEETTE
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHccCc--EEEECCCCCcc-CHHHHHHHHHHHHHhc-CCCCceEEEEEEEcCCe
Confidence            45678999999999999999999999999999  45577766554 9999999999887653 23555666667889999


Q ss_pred             EEEEEEeeeEe--C-CCc-----eEEEEEEEE-eCCeEEEEEEecCC
Q 022429          246 AWVTMKTYIDI--D-TGP-----FNMTNVFEF-HNGQWYMVHHHSSV  283 (297)
Q Consensus       246 Avv~~~e~v~~--~-~g~-----lraT~VfrR-~dG~WrlvhhHaSp  283 (297)
                      |++++..++..  . +|.     .+++.|||| .||+|+|+|.+.-.
T Consensus        90 A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~~~  136 (139)
T 3rob_A           90 AYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDANLV  136 (139)
T ss_dssp             EEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEECC
T ss_pred             EEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhhhc
Confidence            99999988764  2 332     357889999 89999999998743

>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22

Probab=99.65  E-value=1.3e-15  Score=125.30  Aligned_cols=113  Identities=14%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gDvA  246 (297)
                      +.+|++++++|++|+++||+++++++|++|. +++..| |..+.|+++|++.|+.+++.. ....+++.++.+.+.||.|
T Consensus         2 ~~~I~~l~~~~~~A~~~~D~d~~~~lfa~Da-v~~~~~-g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~gd~A   79 (142)
T 2gxf_A            2 EQQLKDIISACDLAIQNEDFDTLMNYYSEDA-VLVVKP-GMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGDTV   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHTTSEEEEE-EEECSS-SCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHhcCCCE-EEEcCC-CCcccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcCCEE
Confidence            3579999999999999999999999999985 444566 567999999999999888632 2346777888889999999


Q ss_pred             EEEEEeeeEe--CCC----ceEEEEEEEE-eCCeEEEEEEecC
Q 022429          247 WVTMKTYIDI--DTG----PFNMTNVFEF-HNGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~e~v~~--~~g----~lraT~VfrR-~dG~WrlvhhHaS  282 (297)
                      ++++.+.+..  +|.    ..++|+||+| .||+|||++.|.+
T Consensus        80 ~~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~~~  122 (142)
T 2gxf_A           80 LVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDNSY  122 (142)
T ss_dssp             EEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEETT
T ss_pred             EEEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEECCC
Confidence            9999877653  222    2478999999 6999999999964

>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7

Probab=99.64  E-value=2.2e-15  Score=126.83  Aligned_cols=115  Identities=18%  Similarity=0.313  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC--CCCCCCCHHHHHHHHHHHhcc--CCCceeEEEEeEEEE
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYNSVIQSWQIAFNW--EQGVDFQVQDVRARV  241 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP--gg~~l~Gr~aVr~sW~~if~~--~~~~~vei~dl~V~v  241 (297)
                      ...++|+++++++.+|+++||.+++++++++|  ++++.|  .+..+.|.+.++.    +|+.  .....+++.+++|.+
T Consensus         9 ~~~~eI~~~~~~~~~Ai~~gD~~~~~~l~~~d--v~~Fd~~~~g~~~~g~~~~r~----~f~~~~~~~~~~~~~~~~V~~   82 (143)
T 2f86_B            9 AQKQDIVRVTQTLLDAISCKDFETYTRLCDTS--MTCFEPEALGNLIEGIEFHRF----YFDGNRKNQVHTTMLNPNVHI   82 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECGGGTTCCEETTHHHHT----TSSSCSCCSCEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHccCHHHHHHhcCCC--EEEEccCcCCccccCHHHHHH----HHhcccCCcceeEEEcceEEE
Confidence            35678999999999999999999999999988  455544  5667889888883    3654  334678999999999


Q ss_pred             eC-CEEEEEEEeeeEe---CCC----ceEEEEEEEEeCCeEEEEEEecCCCCC
Q 022429          242 LT-DIAWVTMKTYIDI---DTG----PFNMTNVFEFHNGQWYMVHHHSSVMLV  286 (297)
Q Consensus       242 ~g-DvAvv~~~e~v~~---~~g----~lraT~VfrR~dG~WrlvhhHaSp~~~  286 (297)
                      .| |+|++++.-....   +|.    ..|.|.||+|.+|+||++|.|.|+++.
T Consensus        83 ~g~d~Av~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g~WkivH~H~S~~~~  135 (143)
T 2f86_B           83 IGEDAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVHRSTQPS  135 (143)
T ss_dssp             ETTTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEC---
T ss_pred             eCCCEEEEEEEeeeeeccCCCCeeeEEEEEEEEEEEeCCcEEEEEEeECCCCC
Confidence            99 9999997654432   232    369999999999999999999998753

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27

Probab=99.62  E-value=1.3e-14  Score=116.11  Aligned_cols=114  Identities=13%  Similarity=0.162  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE-eCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV-LTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v-~gDv  245 (297)
                      ...+|++++++|++|+++||+++++++|++|  .++.+|+++.+.|+++|++.|+..+... ...+.++..++.+ .||+
T Consensus         9 d~~~i~~~~~~~~~a~~~~D~~~~~~l~a~D--~v~~~~~~~~~~G~~ai~~~~~~~~~~~-~~~~~~~~~~i~~~~gd~   85 (135)
T 3d9r_A            9 ELAVIEAAAIAYLTAFNRADIPAVIATYTDD--GVLMGPGRPAAVGKDELAEVYLSVFETV-GFDMAYEIKEVVQTSADW   85 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEECTTSCCEESHHHHHHHHHHHHHHE-EEEEEEEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHhcCCC--EEEECCCCCcccCHHHHHHHHHHHHhhc-CCceeEEEEEEEEecCCE
Confidence            4567999999999999999999999999998  4557887777789999999999988532 1234555556666 8999


Q ss_pred             EEEEEEeeeEe--C-CCc-----eEEEEEEEEe-CCeEEEEEEecCC
Q 022429          246 AWVTMKTYIDI--D-TGP-----FNMTNVFEFH-NGQWYMVHHHSSV  283 (297)
Q Consensus       246 Avv~~~e~v~~--~-~g~-----lraT~VfrR~-dG~WrlvhhHaSp  283 (297)
                      |++.+...+..  . +|.     .+.|.||+|+ ||+|||+++|.|.
T Consensus        86 a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~  132 (135)
T 3d9r_A           86 AFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSK  132 (135)
T ss_dssp             EEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             EEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeecc
Confidence            99988766542  2 332     4789999998 9999999999874

>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28

Probab=99.61  E-value=1.4e-14  Score=122.85  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhcc-CCCceeEEEEeEEE-EeC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNW-EQGVDFQVQDVRAR-VLT  243 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~-~~~~~vei~dl~V~-v~g  243 (297)
                      ....+|++++++|++|++++|+++++++|++|..+  +.+.|..+.|+++|++.|+..|.. .....++++...+. +.+
T Consensus        13 ~d~~aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~--~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (172)
T 3cu3_A           13 ADESAIRAFHRQMIDAWNRGSGEGFAAPFSETADF--ITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNS   90 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE--ECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCeEE--EeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCC
Confidence            35678999999999999999999999999999644  443456889999999999998865 23334555556665 468


Q ss_pred             CEEEEEEEeeeEeCC-------CceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          244 DIAWVTMKTYIDIDT-------GPFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       244 DvAvv~~~e~v~~~~-------g~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      |+|++.+...+...+       ...++|.+|+|++|+|||+++|.|+..
T Consensus        91 d~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s~~~  139 (172)
T 3cu3_A           91 QLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRKL  139 (172)
T ss_dssp             TEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCBCC
T ss_pred             CEEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcCccc
Confidence            999998876554322       126899999999999999999999763

>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}

Probab=99.60  E-value=2.8e-14  Score=119.56  Aligned_cols=119  Identities=13%  Similarity=0.243  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEE-EeCC
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRAR-VLTD  244 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~-v~gD  244 (297)
                      ...+|+++.++|.+|++++|+++++++|++|.  +++...|..+.|+++|++.|+..|... .+..+++....|+ +.+|
T Consensus         4 d~~aI~~l~~~~~~A~~~~D~d~~~~lf~~Da--~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D   81 (146)
T 3gzr_A            4 GTDAIQALIQAYFTAWNTNAPERFAEIFWPDG--SWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPG   81 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGSGGGEEEEE--EEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHhhccCCe--EEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCC
Confidence            45789999999999999999999999999995  334333567899999999999888643 2345677788887 5789


Q ss_pred             EEEEEEEeeeEe---CCC------ceEEEEEEEEeCCeEEEEEEecCCCCCC
Q 022429          245 IAWVTMKTYIDI---DTG------PFNMTNVFEFHNGQWYMVHHHSSVMLVD  287 (297)
Q Consensus       245 vAvv~~~e~v~~---~~g------~lraT~VfrR~dG~WrlvhhHaSp~~~~  287 (297)
                      +|++.+...+..   .+|      ..+.|.||+|++|+|||+++|.||+...
T Consensus        82 ~A~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p~  133 (146)
T 3gzr_A           82 SALAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNPD  133 (146)
T ss_dssp             EEEEEEEEEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECCTT
T ss_pred             EEEEEEEEEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCcCC
Confidence            999999877741   232      2478889999999999999999987433

>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}

Probab=99.58  E-value=3.5e-14  Score=118.65  Aligned_cols=110  Identities=15%  Similarity=0.174  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      .+|..+++   +++++||+++++++|++|  +++..|. +.++.|+++++.-|+.+... ....+++.+++|.+.||+|+
T Consensus        17 ~~i~~~~~---~~L~~gD~~~~~~lyapD--vt~fDp~~~~~~~G~~a~r~yf~~~~~~-~~~~~ei~~p~V~v~gD~A~   90 (134)
T 3ke7_A           17 EMIISLEK---EALASTDPMAFVELSDTD--VIYFDPSLETKIEGLEQLRTYYKGMQLP-PADHFDMIRPVVQVAQNIAV   90 (134)
T ss_dssp             HHHHHHHH---HHHHCSCTTHHHHHEEEE--EEEECTTCSSCEESHHHHHHHHHHHCCC-CCSEEEEEEEEEEEETTEEE
T ss_pred             HHHHHHhH---HHHhCCCHHHHHHhcCCC--EEEEcCCCccccCCHHHHHHHHHhcccC-CcceEEEeCCeEEEeCceEE
Confidence            34545554   677999999999999988  4555553 34688999999988874333 33578999999999999999


Q ss_pred             EEEEeeeEeCC--CceEEEEEEEEe-CCeEEEEEEecCCC
Q 022429          248 VTMKTYIDIDT--GPFNMTNVFEFH-NGQWYMVHHHSSVM  284 (297)
Q Consensus       248 v~~~e~v~~~~--g~lraT~VfrR~-dG~WrlvhhHaSp~  284 (297)
                      .++..+...++  ..+|.|.||||. ||+|+++|+|.|.+
T Consensus        91 ~~y~l~~~~~~~~~~~r~T~V~~r~~dG~W~ivH~H~S~~  130 (134)
T 3ke7_A           91 LTFNLDSYLSDKVIKWNCTEVYRRNPDNQWKIIQTHWSYV  130 (134)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred             EEEEEEEeeCCCcEEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence            99876654433  257999999999 99999999999985

>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}

Probab=99.53  E-value=2e-13  Score=113.54  Aligned_cols=114  Identities=14%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCC--CceeEEEEeEEEEeC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQ--GVDFQVQDVRARVLT  243 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~--~~~vei~dl~V~v~g  243 (297)
                      +...+|+++++++++|+.++|.++|.++.+||  .+.+||.|. ..+++++.++.   ...+.  ...++.++..|++.|
T Consensus         6 ~~~~~~~~le~~~~~A~~~~D~~~L~~LL~dd--f~~v~~sG~-~~~K~~~L~~~---~~~~~~~~~~~~~~~~~vr~~g   79 (129)
T 3ksp_A            6 AKHLQLQTLLSERHAYLMEGNREAMHQLLSSD--FSFIDGQGR-QFDAETYLDHY---VDPDQIQWSNQISESMVVEVFE   79 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECTTCC-EECHHHHHHHH---SCTTTEEEEEEEEEEEEEEECS
T ss_pred             hhHHHHHHHHHHHHHHHHhCCHHHHHhhcCCC--EEEECCCCC-CcCHHHHHHHh---ccCCCccceeecccceeEEEEC
Confidence            56778999999999999999999999999998  788999995 45688888742   12221  235667888999999


Q ss_pred             CEEEEEEEeeeEe--CC----CceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          244 DIAWVTMKTYIDI--DT----GPFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       244 DvAvv~~~e~v~~--~~----g~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      |+|+++++.....  +|    +.+++|.||+|.+|+|||+.||++|..
T Consensus        80 d~AvVt~~~~~~~~~~g~~~~~~~~~t~VW~~~~g~Wrlva~q~Tp~~  127 (129)
T 3ksp_A           80 TTALVQEIVEDHFSYGRSMYIGRFRSVSLYHWANEGWKWHFHQLTPLD  127 (129)
T ss_dssp             SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEEecCCeEEeEEEEEEEEEEEeCCeeEEEEEeeEecC
Confidence            9999999877764  33    237899999999999999999999874

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.42  E-value=8.5e-14  Score=97.61  Aligned_cols=47  Identities=23%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             cchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhh
Q 022429           97 ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKAL  143 (297)
Q Consensus        97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l  143 (297)
                      ...+..||+||+.+||+||++.||+++++|||+|+++++++.+||++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            45688999999999999999999999999999999999999999986

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.29  E-value=1.9e-12  Score=121.39  Aligned_cols=76  Identities=9%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             cCCccchhhcccHHHHHHHhcCCChhhHh-hhhccChHHHHHcCCchhhhhhhcccccccc-CCcCCCCChhHHHHHH
Q 022429           93 RGSGASMMEQLVPEITTHALSYLDYPSLC-RLSMTNSLMRKAANDDNAWKALYHKDFTLEQ-DSVIPVNGWKAYYAAT  168 (297)
Q Consensus        93 ~~~~~~~l~~LP~Eil~~IlsyLd~~sL~-~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~-~~~~~~~~WKelY~~t  168 (297)
                      +.+....+..||+|||++||+||+++||+ ++++|||+|+.+++|+.+||+++.+....+. ....+..+||++|...
T Consensus        44 ~~~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~Wk~~y~~~  121 (297)
T 2e31_A           44 EAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLS  121 (297)
T ss_dssp             ---CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----CCSCHHHHHHHH
T ss_pred             ccccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccccCCCCCChhhhhehe
Confidence            34455678899999999999999999999 9999999999999999999999877633211 1222577899999763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.27  E-value=5.3e-12  Score=118.56  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=64.0

Q ss_pred             cCCccchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccccccC---------CcCCCCChhH
Q 022429           93 RGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD---------SVIPVNGWKA  163 (297)
Q Consensus        93 ~~~~~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~---------~~~~~~~WKe  163 (297)
                      +....+++..||+|++++||+|||+.||+++++|||+|+++++|+.+||++|.+.......         ......+||.
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~   91 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS   91 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHH
Confidence            4456788999999999999999999999999999999999999999999998766433211         0113467999


Q ss_pred             HHHHHHHH
Q 022429          164 YYAATRAV  171 (297)
Q Consensus       164 lY~~t~aI  171 (297)
                      .|.....+
T Consensus        92 ~~~~~~~~   99 (445)
T 2ovr_B           92 AYIRQHRI   99 (445)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhhhhh
Confidence            99876554

>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25

Probab=99.23  E-value=2.6e-10  Score=95.99  Aligned_cols=115  Identities=10%  Similarity=0.026  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      ....+|+++..+|++++.++|.+.+.++|++|..+  .+|+ ....|+++|++.|+..+.. ......+..+.|.+.||.
T Consensus        11 ~d~~~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~--~~~g-~~~~G~~~i~~~~~~~~~~-~~~~h~~~~~~i~~~gd~   86 (170)
T 2chc_A           11 IEILRIQALCARYCLTINTQDGEGWAGCFTEDGAF--EFDG-WVIRGRPALREYADAHARV-VRGRHLTTDLLYEVDGDV   86 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEE--EETT-EEEESHHHHHHHHHHHHHH-CCCCEEEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHhcccCcEEE--EeCC-CCcCCHHHHHHHHHHhhcc-cceEEecCCeEEEEeCCE
Confidence            45678999999999999999999999999999543  5665 4678999999999887765 334566788888889999


Q ss_pred             EEEEEEeeeE--eCCC-----ceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          246 AWVTMKTYID--IDTG-----PFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       246 Avv~~~e~v~--~~~g-----~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      |.+.+.....  ..+|     ..+++.+|+|++|+|||+++|.+..
T Consensus        87 A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~Wri~~r~~~~~  132 (170)
T 2chc_A           87 ATGRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAYRRLRND  132 (170)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEECCEEEEEEEEEEEe
Confidence            9887765322  2233     2478999999999999999998865

>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=99.22  E-value=2e-10  Score=96.04  Aligned_cols=120  Identities=7%  Similarity=-0.027  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CChhhhhhhhccCCceeeecCC-C-CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-E
Q 022429          166 AATRAVVNVNAEFFNIIRE-RSLPAMSRFWLNADYVKCIHAS-G-ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-V  241 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~a-gDldam~alWaddd~V~cvhPg-g-~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-v  241 (297)
                      ....+|+++..+|++++.+ +|.+.+.++|++|..+  ..|+ | ..+.|+++|++.|+..+.........+..+.|. +
T Consensus        25 ~d~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~--~~~~~g~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~  102 (163)
T 3b8l_A           25 EDRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVF--DLSGIGLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGY  102 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEE--ECGGGTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEE--EecCCCCCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEe
Confidence            3567899999999999999 9999999999999543  4443 2 268899999999887764332334567788888 8


Q ss_pred             eCCEEEEEEEeeeEe--C-CCc----eEEEEEEEEeCCeEEEEEEecCCCCCC
Q 022429          242 LTDIAWVTMKTYIDI--D-TGP----FNMTNVFEFHNGQWYMVHHHSSVMLVD  287 (297)
Q Consensus       242 ~gDvAvv~~~e~v~~--~-~g~----lraT~VfrR~dG~WrlvhhHaSp~~~~  287 (297)
                      .||.|.+.+...+..  . ++.    .+++.+|+|++|+|||++.|.++....
T Consensus       103 ~gd~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg~WrI~~r~~~~~~~~  155 (163)
T 3b8l_A          103 EGDTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATRYTMDFLMPL  155 (163)
T ss_dssp             CSSEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTEEEEEEEEEEESSCC
T ss_pred             CCCEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCCEEEEEEEEEEEEecC
Confidence            899998877655421  2 222    478999999999999999999877553

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.21  E-value=5.2e-12  Score=118.62  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=50.4

Q ss_pred             chhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccccc
Q 022429           98 SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTL  150 (297)
Q Consensus        98 ~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~  150 (297)
                      .+++.||.||+++|||||+++|||++++|||+|+.+++|+.|||.++.++++.
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~   55 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPS   55 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGG
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCC
Confidence            56889999999999999999999999999999999999999999999988774

>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=99.19  E-value=2.1e-10  Score=94.42  Aligned_cols=122  Identities=10%  Similarity=0.057  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC---CCceeEEEEeEEEEe
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE---QGVDFQVQDVRARVL  242 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~---~~~~vei~dl~V~v~  242 (297)
                      ....+|+++..+|.+++.++|.+.+.++|++|..  ..+|++....|+++|++.|+..+...   ......+..+.|.+.
T Consensus        16 ~d~~~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~--~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~   93 (155)
T 2rfr_A           16 EDREEIRELIARYGPLADSGDAEALSELWVEDGE--YAVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE   93 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEE--EEETTSCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCceE--EEcCCCccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEe
Confidence            3567899999999999999999999999999953  45666643389999999887654311   123456778888889


Q ss_pred             CCEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCeEEEEEEecCCCCCCCc
Q 022429          243 TDIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQWYMVHHHSSVMLVDGE  289 (297)
Q Consensus       243 gDvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~WrlvhhHaSp~~~~~~  289 (297)
                      ||.|.+.+...+..  .++.     .+++.+|+|++|+|||++.|.++....++
T Consensus        94 gd~A~~~~~~~~~~~~~~~~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~~~~  147 (155)
T 2rfr_A           94 GDTATARCHSVVFRCVSGTFGSHRVSANRWTFRRTPAGWRAVRRENALLDGSAA  147 (155)
T ss_dssp             TTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEESSSCHH
T ss_pred             CCEEEEEEEEEEEEEcCCCceEEEeeeeEEEEEECCCEEEEEEEEEEecCCChh
Confidence            99999887655432  3332     25678999999999999999987654443

>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12

Probab=99.15  E-value=4.8e-10  Score=91.90  Aligned_cols=111  Identities=11%  Similarity=0.072  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHhC-ChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-EeCCEE
Q 022429          169 RAVVNVNAEFFNIIRER-SLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-VLTDIA  246 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~ag-Dldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-v~gDvA  246 (297)
                      ..+.+..++|+++...+ |+++++++|++|  .+.++|+| ...|++++++.|+..++..+++.+++.++.+. .++|.+
T Consensus        10 ~~~~~~ie~W~~~~~~~~dl~~l~a~~a~d--~~mv~p~G-~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~   86 (128)
T 1tp6_A           10 HHAHVAIRDWLAGDSRADALDALMARFAED--FSMVTPHG-VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGA   86 (128)
T ss_dssp             HHHHHHHHHHHHTCCCTTHHHHHHTTEEEE--EEEECTTS-CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHcCCCcHhHHHHHHHhcCCC--EEEECCCC-eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEE
Confidence            34666777777777776 999999999999  55578877 57899999999999998888888998888885 469999


Q ss_pred             EEEEEeeeEeCCC--ceEEEEEEEEe-CCeEEEEEEecC
Q 022429          247 WVTMKTYIDIDTG--PFNMTNVFEFH-NGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~e~v~~~~g--~lraT~VfrR~-dG~WrlvhhHaS  282 (297)
                      ++.+.+.-..+++  .-++|.||+|. +|+|+-.|-|.+
T Consensus        87 vv~y~~~~~~~~~~~~rrsT~v~~~~~~g~~~W~~lHET  125 (128)
T 1tp6_A           87 TLAYREIQSDAAGRSERLSTVVLHRDDEGRLYWRHLQET  125 (128)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred             EEEEEEEeccCCceeEEEEEEEEEeCCCCCEEEEEEEEE
Confidence            9998866543332  25889999665 886444455544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.15  E-value=1.5e-11  Score=115.38  Aligned_cols=57  Identities=16%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             cccCCccchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCC-chhhhhhhccc
Q 022429           91 AERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAAND-DNAWKALYHKD  147 (297)
Q Consensus        91 ~~~~~~~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d-~~lWr~l~~~~  147 (297)
                      .+++...+++..||+||+++||||||++||+++++|||+|++++.+ +.|||++|.+.
T Consensus         6 ~~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B            6 IKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             ---CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            3466778999999999999999999999999999999999999998 89999998644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.12  E-value=1.2e-11  Score=116.24  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=52.4

Q ss_pred             cCCccchhhcccHH----HHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccc
Q 022429           93 RGSGASMMEQLVPE----ITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT  149 (297)
Q Consensus        93 ~~~~~~~l~~LP~E----il~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~  149 (297)
                      +....+++..||+|    |+++||+|||+.||+++++|||+|+++++|+.|||++|.+.+.
T Consensus         4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A            4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            34557889999999    9999999999999999999999999999999999999988764

>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29

Probab=99.03  E-value=2.2e-09  Score=85.28  Aligned_cols=107  Identities=9%  Similarity=0.110  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      ...++.++||+|++++|+++++++|++|..+. -+|+++...|++++++.|+..+.. +  .++++.+++.+.||.+++.
T Consensus         4 ~~~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~-~~~g~~~~~G~~ai~~~~~~~~~~-~--~~~~~~~~~~~~gd~v~~~   79 (123)
T 2k54_A            4 EIELPVQKQLEAYNARDIDAFMAWWADDCQYY-AFPATLLAGNAAEIRVRHIERFKE-P--DLYGELLTRVIVGNVVIDH   79 (123)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEE-ETTTEEEEESHHHHHHHHHHHTTC-T--TCEEEEEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHhhcCCceEEE-cCCCCcccCCHHHHHHHHHHHcCC-C--CcEEEEEEEEEECCEEEEE
Confidence            45678899999999999999999999995332 245555689999999999998876 4  4555566677889987665


Q ss_pred             EEeeeEeCCC--ceEEEEEEEEeCCeEEEEEEecC
Q 022429          250 MKTYIDIDTG--PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       250 ~~e~v~~~~g--~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ..-....+++  .+....+|+-+||  ||+.+...
T Consensus        80 ~~~~g~~~~~~~~~~~~~vf~v~dG--kI~~~~~~  112 (123)
T 2k54_A           80 ETVTRNFPEGKGEVDVACIYEVENG--RIAKAWFK  112 (123)
T ss_dssp             EEEECCBTTBCCEEEEEEEEEEETT--EEEEEEEE
T ss_pred             EEEEeECCCCceEEEEEEEEEEECC--EEEEEEEE
Confidence            5433322333  5888999999998  56666543

>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}

Probab=99.03  E-value=3.1e-09  Score=90.81  Aligned_cols=115  Identities=10%  Similarity=0.160  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHH-HHHhccCCCceeEEEEeEEEEeC
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSW-QIAFNWEQGVDFQVQDVRARVLT  243 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW-~~if~~~~~~~vei~dl~V~v~g  243 (297)
                      .....+|+++..+|.+++.++|.+.+.++|++|..+  ..|+...+.|++++++.| +..+.........+..+.|.+.|
T Consensus        27 l~d~~~I~~ll~ry~~alD~~d~d~~~~lfteDa~~--~~~~~g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g  104 (176)
T 3a76_A           27 LASRAAIQDLYSDKLIAVDKRQEGRLASIWWDDAEW--TIEGIGTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVS  104 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEE--EETTTEEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHhhccCCeEE--EcCCCccccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcC
Confidence            345678999999999999999999999999999533  345433578999999988 65554333345667888888888


Q ss_pred             -CEEEEEEEeeeE--e-CCC-----ceEEEEEEEEeCCeEEEEEEec
Q 022429          244 -DIAWVTMKTYID--I-DTG-----PFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       244 -DvAvv~~~e~v~--~-~~g-----~lraT~VfrR~dG~WrlvhhHa  281 (297)
                       |.|.+.+...+.  . .++     ..+++.+|+|++|+|||.+.+.
T Consensus       105 ~d~A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg~WrI~~r~~  151 (176)
T 3a76_A          105 ADKVNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDGVWKFSKRNA  151 (176)
T ss_dssp             SSEEEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECCEEEEEEEEE
Confidence             899886533322  2 222     1478999999999999999754

>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A

Probab=98.97  E-value=7.1e-09  Score=83.68  Aligned_cols=120  Identities=6%  Similarity=-0.016  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-CC-------CCCHHHHHHHHHHHhccCCCceeEEEEeEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-EL-------FSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR  240 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-~~-------l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~  240 (297)
                      .+++++.++|++|++++|++++.++|++|.  +...|.+ .+       +.|+++|++.|+..++.. ..++++.+..+.
T Consensus         7 ~~~~~~v~~~~~a~~~~D~~~~~~l~a~D~--v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~-~~~~~~~~~~i~   83 (139)
T 2a15_A            7 SPALIASQSSWRCVQAHDREGWLALMADDV--VIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN-RLTVTCEETFPS   83 (139)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHTEEEEE--EEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT-TCEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHhcCCCE--EEECCCCCCccCCCCceeecHHHHHHHHHHhcccc-eeEEeccCceEe
Confidence            467889999999999999999999999994  3344533 23       799999999999988765 455555554555


Q ss_pred             EeCCEEEEEEEeeeEeCCC---ceEEEEEEEEeCCeEEEEEEecCCCCCCCcccccc
Q 022429          241 VLTDIAWVTMKTYIDIDTG---PFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQV  294 (297)
Q Consensus       241 v~gDvAvv~~~e~v~~~~g---~lraT~VfrR~dG~WrlvhhHaSp~~~~~~~~~~~  294 (297)
                      +.||.+++.+.......+|   .++.+.+|+. ++.|||++++...  ++....+|+
T Consensus        84 ~~g~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~dGkI~~~~~y~--d~~~~~~ql  137 (139)
T 2a15_A           84 SSPDEIAHILVLHSEFDGGFTSEVRGVFTYRV-NKAGLITNMRGYW--NLDMMTFGN  137 (139)
T ss_dssp             SSTTEEEEEEEEEEEETTTEEEEEEEEEEEEE-CTTSCEEEEEEEC--CGGGCEEEC
T ss_pred             ecCCEEEEEEEEEEEeCCCCEEEEEEEEEEEE-CCCCeEEEeehhc--CHHHHHhhh
Confidence            7899888777654443344   2678888965 4468999887753  345555554

>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28

Probab=98.94  E-value=1.2e-08  Score=84.76  Aligned_cols=117  Identities=10%  Similarity=0.070  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-  243 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-  243 (297)
                      .....+|+++..+|..++.++|.+.+.++|++|..+  .++++..+.|+++|++.|...+.........+..+.|.+.| 
T Consensus         7 l~d~~~I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~--~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gd   84 (150)
T 3ef8_A            7 LVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEV--SYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSE   84 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE--EEETTEEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHhhccCceEE--EccCCCCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCC
Confidence            456788999999999999999999999999999543  33333357899999998766554223345678888898877 


Q ss_pred             CEEEEEEEeeeE--e-CCCc-----eEEEEEEEEeCCeEEEEEEecCC
Q 022429          244 DIAWVTMKTYID--I-DTGP-----FNMTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       244 DvAvv~~~e~v~--~-~~g~-----lraT~VfrR~dG~WrlvhhHaSp  283 (297)
                      |.|.+.+...+.  . +++.     -+++..|+|++|+|||.+.+..+
T Consensus        85 d~A~~~~~~~~~~~~~~~~~~~~~~gry~d~~~r~dg~Wri~~r~~~~  132 (150)
T 3ef8_A           85 TEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRRELRT  132 (150)
T ss_dssp             TEEEEEEEEEEEEEESSSSCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEEccCCCCeEEEEEEEEEEEEEECCEEEEEEEEEEe
Confidence            588887765542  1 2221     47899999999999999998643

>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25

Probab=98.86  E-value=1.2e-07  Score=77.77  Aligned_cols=112  Identities=11%  Similarity=0.076  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gDv  245 (297)
                      ...+|+++..+|..++.++|.+.+.++|++|...  ..|.|+ ..|+++|++.++..+... .+....+..+.|.+.||.
T Consensus         8 d~~~I~~l~~rya~~lD~~d~~~~~~lft~Da~~--~~~~g~-~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~~~d~   84 (144)
T 2rgq_A            8 DKLEIMELAARFEMSLDKEDVENYLATFASDGAL--QGFWGI-AKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGNYDE   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEE--EETTEE-EESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSE
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHhhccCcEEE--EcCCCC-CCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEEeCCE
Confidence            4578999999999999999999999999999533  445443 489999999887766432 234566888889899998


Q ss_pred             EEEEEEeeeEe-CCC----ceEEEEEEEEeCCeEEEEEEec
Q 022429          246 AWVTMKTYIDI-DTG----PFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       246 Avv~~~e~v~~-~~g----~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      |.+.+...+.. .+.    ..+++.+|+|++|+|||.+.+.
T Consensus        85 a~~~~~~~~~~~~~~~~~~~g~y~d~~~r~dg~Wri~~r~~  125 (144)
T 2rgq_A           85 ATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQI  125 (144)
T ss_dssp             EEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEEecCCeEEEEEEEEEEEEEECCEEEEEEEEE
Confidence            88876655433 221    1378999999999999999987

>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...

Probab=98.81  E-value=4.1e-08  Score=77.74  Aligned_cols=109  Identities=8%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      ..+++++.++|++|+++||++++.++|++|.  +...|+ +..+.|+++|++.|+..+...+...  ++...+.+.||.+
T Consensus         6 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~--~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~--~~~~~~~~~g~~~   81 (131)
T 1oh0_A            6 AQEVQGLMARYIELVDVGDIEAIVQMYADDA--TVEDPFGQPPIHGREQIAAFYRQGLGGGKVRA--CLTGPVRASHNGC   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHEEEEE--EEESSTTSCCEEHHHHHHHHHHHHHSSSCCEE--EESSCCEECSSSE
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHcCCCE--EEEcCCCCCCcccHHHHHHHHHHHhhccceeE--eecceEEECCCeE
Confidence            4578889999999999999999999999994  445564 3578999999999999887654434  4444566899988


Q ss_pred             -EEEEEeeeEeCCCc--eEEEEEEEE-eCCeEEEEEEecC
Q 022429          247 -WVTMKTYIDIDTGP--FNMTNVFEF-HNGQWYMVHHHSS  282 (297)
Q Consensus       247 -vv~~~e~v~~~~g~--lraT~VfrR-~dG~WrlvhhHaS  282 (297)
                       ++.+......+|..  ++.+.+|+. +||  ||+.++..
T Consensus        82 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~dG--kI~~~~~~  119 (131)
T 1oh0_A           82 GAMPFRVEMVWNGQPCALDVIDVMRFDEHG--RIQTMQAY  119 (131)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEEEEEECTTS--CEEEEEEE
T ss_pred             EEEEEEEEEEeCCcEEEEEEEEEEEECCCC--cEEhHHhh
Confidence             77765444323332  678899999 788  56666543

>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A

Probab=98.76  E-value=1.3e-07  Score=73.17  Aligned_cols=108  Identities=10%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      ..+++++.++|++|++++|++++.++|++|.  +...| ++..+.|++++++.|+..+...+  .+++.. .+.+.||.+
T Consensus         4 ~~~~~~~v~~~~~a~~~~D~~~~~~l~a~D~--~~~~~~~~~~~~G~~~i~~~~~~~~~~~~--~~~~~~-~~~~~g~~~   78 (125)
T 1ohp_A            4 PEHMTAVVQRYVAALNAGDLDGIVALFADDA--TVENPVGSEPRSGTAAIREFYANSLKLPL--AVELTQ-EVRAVANEA   78 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEE--EEESSTTSCCEESHHHHHHHHHHHTSSCC--EEEECS-CCEEETTEE
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHcCCCe--EEECCCCCCCccCHHHHHHHHHHhcccCc--eEEEee-eEEEeCCEE
Confidence            4578899999999999999999999999994  33445 45688999999999998887553  455441 466899988


Q ss_pred             EEEEEeeeEeCCCc--eEEEEEEEEe-CCeEEEEEEecC
Q 022429          247 WVTMKTYIDIDTGP--FNMTNVFEFH-NGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~e~v~~~~g~--lraT~VfrR~-dG~WrlvhhHaS  282 (297)
                      ++.+......+|..  ++.+.+|+.. +|  ||+.++..
T Consensus        79 ~~~~~~~~~~~g~~~~~~~~~~~~~~~dG--kI~~~~~~  115 (125)
T 1ohp_A           79 AFAFIVSFEYQGRKTVVAPIDHFRFNGAG--KVVSMRAL  115 (125)
T ss_dssp             EEEEEEEEEETTEEEEECCEEEEEECTTS--CEEEEEEE
T ss_pred             EEEEEEEEEecCceEEEEEEEEEEECCCC--cEEEEEEE
Confidence            88766554333433  5678899984 66  56665543

>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*

Probab=98.75  E-value=2.3e-07  Score=75.52  Aligned_cols=110  Identities=11%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCcee-EEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDF-QVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~v-ei~dl~V~v~gDvA  246 (297)
                      ....+++.++|++|+++||++++.++|++|...  ..|+.+.+.|+++|++.|+..+...+   + +++..++...||.+
T Consensus        21 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~--~~~~~~~~~G~~~i~~~~~~~~~~~~---~~~~~~~~~~~~gd~v   95 (149)
T 1nww_A           21 STPDEKIVLEFMDALTSNDAAKLIEYFAEDTMY--QNMPLPPAYGRDAVEQTLAGLFTVMS---IDAVETFHIGSSNGLV   95 (149)
T ss_dssp             CSHHHHHHHHHHHHGGGCCHHHHHTTBCSSCEE--EETTSCCEESHHHHHHHHHHHHHHEE---EEEEEEEEEEEETTEE
T ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHhCCCEEE--EcCCCCCccCHHHHHHHHHHHHhhCC---cceEEEEEEEecCCEE
Confidence            345678889999999999999999999999543  44555568899999999988886542   4 55566677899988


Q ss_pred             EEEEEeeeEe-CCC-c--eEEEEEEEEeCCeEEEEEEecC
Q 022429          247 WVTMKTYIDI-DTG-P--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~e~v~~-~~g-~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ++........ .+| .  ++...+|+.+||.+.-...+..
T Consensus        96 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~dGkI~~~~~~~d  135 (149)
T 1nww_A           96 YTERVDVLRALPTGKSYNLSILGVFQLTEGKITGWRDYFD  135 (149)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEEEEETTEEEEEEEECC
T ss_pred             EEEEEEEEEEcCCCCEEEEeeEEEEEEeCCEEEEEehhcC
Confidence            8766655444 333 3  5788899999997665554443

>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}

Probab=98.74  E-value=1.5e-07  Score=78.32  Aligned_cols=103  Identities=10%  Similarity=0.076  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeec-CCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH-ASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvh-Pgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      .++.++|++|++++|++++.++|++|.  +... +.+..+.|+++|++.|+.+++..+  .+.++...+.+.||.+++.+
T Consensus        28 ~eiv~~y~~A~n~~D~d~~~~l~a~D~--v~~d~~~g~~~~Greai~~~~~~~~~~~~--d~~~~v~~~~~~gd~v~~~~  103 (158)
T 4h3u_A           28 PEIVTAWAAAWTGTNPNALGTLFAADG--TYVDHAIGATMTGREQISGWKARTDAMIE--NVHVTITKAYRAGDHVTIEA  103 (158)
T ss_dssp             CHHHHHHHHHHHSSCHHHHHTTEEEEE--EEEETTTTEEEESHHHHHHHHHHHHHHEE--EEEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhcccc--eEeccCCCceEecchhhhhhhhhhhccCC--ccceeEeEEeecCceEEEEE
Confidence            357889999999999999999999994  3333 445678999999998888776543  34455556788999988887


Q ss_pred             EeeeEeC-CC-c--eEEEEEEEEeCCeEEEEEEe
Q 022429          251 KTYIDID-TG-P--FNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       251 ~e~v~~~-~g-~--lraT~VfrR~dG~WrlvhhH  280 (297)
                      ....... .| +  ++...+|+-+||+  |+.++
T Consensus       104 ~~~gt~~~tG~~~~~~~~~v~~~~dGk--I~~~~  135 (158)
T 4h3u_A          104 VYGGHIKGAPTPFAVPMATLLRTRGEE--ITSDQ  135 (158)
T ss_dssp             EEEEEETTSSSCEEEEEEEEEEEETTE--EEEEE
T ss_pred             EEEEEecCccCcceeeeEEEEEEECCE--EEEEE
Confidence            7666543 23 3  5788899999995  44444

>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}

Probab=98.73  E-value=1.9e-07  Score=73.66  Aligned_cols=103  Identities=9%  Similarity=0.048  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      .+..++||+||++||++++.++.++|  ++...|++..+.|++++++.++......++..+++  .++...||.+++.+.
T Consensus         3 ~~~v~~~~~a~~~gD~~~~~~~ladD--v~w~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~i--~~~i~~Gd~Vvv~~~   78 (112)
T 3f14_A            3 ETTHYSIAQHFSSGDFPAVYACFNDI--IEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTN--DNVIQNENQIVIEGK   78 (112)
T ss_dssp             HHHHHHHHHHHHTTCGGGTGGGEEEE--EEEEETTTEEEESHHHHHHHHHHHHHHHHTSEEEE--EEEEECSSEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCHHHHHHhcCCc--eEEEEcCCccEecHHHHHHHHHHHHhhcCCcEEEE--EEEEEeCCEEEEEEE
Confidence            45788999999999999999999988  44455667778999999998887775443334444  458889999888887


Q ss_pred             eeeEe-CCCc--eEEEEEEEEeCCeEEEEEEe
Q 022429          252 TYIDI-DTGP--FNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       252 e~v~~-~~g~--lraT~VfrR~dG~WrlvhhH  280 (297)
                      ..... +|..  .....|||-+||  ||+...
T Consensus        79 ~~~~~~~g~~~~~~~~~vf~~~dG--kI~e~~  108 (112)
T 3f14_A           79 CRYFDAEGKEAFVSYCDIYRFEND--TIKTIT  108 (112)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEETT--EEEEEE
T ss_pred             EEEEeCCCCEEEEEEEEEEEEeCC--EEEEEE
Confidence            66543 3333  578899999998  565543

>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28

Probab=98.71  E-value=2e-07  Score=80.50  Aligned_cols=117  Identities=11%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeee-cCCC-----CCCCCHHHHHHHHHHHhcc---CCCceeEEEEe
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCI-HASG-----ELFSGYNSVIQSWQIAFNW---EQGVDFQVQDV  237 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cv-hPgg-----~~l~Gr~aVr~sW~~if~~---~~~~~vei~dl  237 (297)
                      ...+|+++..+|..++.++|.+.+.++|++|..+... ..++     ..+.|+++|++.++..+..   .......+..+
T Consensus        24 d~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~  103 (179)
T 3ejv_A           24 DETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAP  103 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCC
Confidence            5678999999999999999999999999999643222 1121     3678999999988887765   23345678888


Q ss_pred             EEEEeCCEEEEEEEeeeE--e--C---CC-c-----eE----------EEEEEEEeCCeEEEEEEecCC
Q 022429          238 RARVLTDIAWVTMKTYID--I--D---TG-P-----FN----------MTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       238 ~V~v~gDvAvv~~~e~v~--~--~---~g-~-----lr----------aT~VfrR~dG~WrlvhhHaSp  283 (297)
                      .|.+.||.|++++...+.  .  .   |+ +     .+          +...|+|++|+|||.+....+
T Consensus       104 ~I~vdgD~A~~~~~~y~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~g~Y~D~~~R~dg~Wri~~r~~~~  172 (179)
T 3ejv_A          104 IIVIEGDHAVLDAQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTVADGWVISAMRIEH  172 (179)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEECCCCTTCCCTTCCSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEcCCeeEEEEEEEEEEEEeeccCCCCCcceeecccccccccccceEEEEEEEECCeEEEEEEEEEE
Confidence            899999999444443321  1  1   22 1     13          899999999999999987543

>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9

Probab=98.68  E-value=2.6e-07  Score=73.39  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-------CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-------ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT  243 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-------~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g  243 (297)
                      -+++.++||+|+++||++++.+++++|.  +...|++       ....|++++++.|+.++...+  .+.++..++...|
T Consensus         5 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~--~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g   80 (132)
T 3ebt_A            5 NMQTVRESYEAFHRRDLPGVLAALAPDV--RWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIA--EMRLAPDEFIESG   80 (132)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEE--EEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHhccCHHHHHHhcCCCE--EEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCC--ceEEEEeEEEEeC
Confidence            3567889999999999999999999994  3344432       467899999998888776543  3445555677889


Q ss_pred             CEEEEEEEeeeEeCCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          244 DIAWVTMKTYIDIDTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       244 DvAvv~~~e~v~~~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      |.+++.+..+....+| .  ++...+|+-+||  ||+.+..
T Consensus        81 d~v~v~~~~~~~~~~G~~~~~~~~~v~~~~dG--kI~~~~~  119 (132)
T 3ebt_A           81 ERIVVLGTRRVTAVNGRSATLKFVHVWRFENG--RAVTFED  119 (132)
T ss_dssp             TEEEEEEEEEEEETTSCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             CEEEEEEEEEEEeCCCCEEeeeEEEEEEEECC--EEEEEEE
Confidence            9887777655443334 3  578889999998  5656554

>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.68  E-value=3.5e-07  Score=72.01  Aligned_cols=103  Identities=9%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      .++.++|++|++++|++++.++|++|. +..-.|++....|++++++.|+..++..+.  ...+..++...||.++++..
T Consensus         5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~-v~h~~~~~~~~~G~~~~~~~~~~~~~~~p~--~~~~i~~~~~~Gd~V~~~~~   81 (117)
T 3ff2_A            5 LETAKAMIAAYNAQDVDTYVSYMTDDA-CEANYRGDVVREGKEGTRSGLAAAFARWPQ--NHAEIKDAQQVGTYVLMREH   81 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEE-EEEETTSCEEECHHHHHHHHHHHHHHHCTT--CEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHcccCHHHHHHhcCCcE-EEEeCCCCccccCHHHHHHHHHHHHhhCCC--ceEEEEEEEEECCEEEEEEE
Confidence            467889999999999999999999883 322233445688999999999988876444  44555668899998777654


Q ss_pred             eeeEe--CC----CceEEEEEEEEeCCeEEEEEE
Q 022429          252 TYIDI--DT----GPFNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       252 e~v~~--~~----g~lraT~VfrR~dG~Wrlvhh  279 (297)
                      -....  +|    ..+.+..+||-+||  ||+.|
T Consensus        82 ~~~~~~~~G~~~~~~~~~~~ifr~~dG--kI~e~  113 (117)
T 3ff2_A           82 VTRGPATDGSPLVEPFDVVAVYSFEGD--KCSRV  113 (117)
T ss_dssp             EECCSCSSSCCCCCCEEEEEEEEEETT--EEEEE
T ss_pred             EEecCCCCCCcccccEEEEEEEEEECC--EEEEE
Confidence            43321  13    24688999999998  45443

>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14

Probab=98.63  E-value=6.4e-07  Score=72.34  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC-CCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-LFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT  243 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~-~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g  243 (297)
                      -....+|+++..+|.+++.++|.+.|.+++.+|.......++|. .....++..+.....|...+....  +...|.+.|
T Consensus         8 ~~d~~aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~i~g   85 (128)
T 3blz_A            8 VQEYHAIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSPEAKA--AIARIDIVG   85 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHHHTCCCCTTCEE--EEEEEEEET
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcEEecCHHHHHHHHHhcCCCCccccC--eEEEEEEEC
Confidence            34567899999999999999999999999999976654432332 112233333332222211222222  246688889


Q ss_pred             CEEEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEe
Q 022429          244 DIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       244 DvAvv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhH  280 (297)
                      |+|.+..... ...++.+.-...|+|++|+|||++.-
T Consensus        86 d~A~a~~~~~-~~~~~~~~d~~~l~k~dg~WkI~~~~  121 (128)
T 3blz_A           86 TAASARIDTD-DISGFRFTDFFNLLKVEGKWTVVSKI  121 (128)
T ss_dssp             TEEEEEEEEE-EETTEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEEEEE-EcCCCceEEeEEEEEECCEEEEEEEE
Confidence            9999866642 12233332233688999999998753

>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}

Probab=98.62  E-value=7.4e-07  Score=73.60  Aligned_cols=118  Identities=8%  Similarity=0.036  Sum_probs=80.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC----CCCCHHHHHHHHHHHhccCCCceeEEE
Q 022429          160 GWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE----LFSGYNSVIQSWQIAFNWEQGVDFQVQ  235 (297)
Q Consensus       160 ~WKelY~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~----~l~Gr~aVr~sW~~if~~~~~~~vei~  235 (297)
                      +=..+|..+..-+++.++||+|+++||++++.+++++|.  +...|++.    ...|++++++.|+.++...+ ..++++
T Consensus        11 ~~~~~~~~~~~n~~~v~~~~~a~~~gD~~~l~~l~a~D~--v~~~p~~~~~~g~~~G~~~v~~~~~~~~~~~~-~~~~~~   87 (148)
T 3g8z_A           11 HHENLYFQGMNTIDIAKSYITAIQTGDHATLGSIISPDV--IWHQPGNHQFSGTHRGMAVVGPMLGKMMEVSN-GTFAIS   87 (148)
T ss_dssp             ---------CCHHHHHHHHHHHHHHTCHHHHHHHEEEEE--EEEECSSSTTCEEEESHHHHHHHHHHHHHHTT-TCCEEE
T ss_pred             cccccccCCcchHHHHHHHHHHHhcCCHHHHHHHcCCCE--EEEcCCCCCCCceEcCHHHHHHHHHHHHHhcC-CceEEE
Confidence            345678888888999999999999999999999999994  34455543    36899999998888776543 235555


Q ss_pred             E-eEEEEeCCEEEEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429          236 D-VRARVLTDIAWVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       236 d-l~V~v~gDvAvv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      . ..+.+.||.+++.+.......|..  ++...+|+-+||  ||+.+...
T Consensus        88 ~i~~~~~~gd~v~v~~~~~~~~~G~~~~~~~~~v~~~~dG--kI~e~~~y  135 (148)
T 3g8z_A           88 RADDYMASGDWVAITLEFSGQANGVTLKQAGVDLLRIEDG--KIVEVRLF  135 (148)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             ecceEEecCCEEEEEEEEEEEeCCcEEEeeEEEEEEEECC--EEEEEEEe
Confidence            4 457789998877766554433433  468899999998  56666543

>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}

Probab=98.61  E-value=1.9e-06  Score=72.21  Aligned_cols=109  Identities=7%  Similarity=0.013  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      ...+-.++.++||+++++||++++.++|++|  ++...|......|++++++.|+.+++..+...+++  .++...||.+
T Consensus        32 ~~~~n~~~v~~~~~a~~~~d~~~l~~~~a~D--~v~~~p~~g~~~G~e~~~~~~~~~~~~~pd~~~~i--~~~~~~gd~v  107 (159)
T 3k0z_A           32 EATEMVHAAQRFYAFWDTGKEELIPQTVTEN--FFDHTLPKGRPQGTEGLKFAAQNFRKIVPNIHCEI--EDLLVVGDKV  107 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCGGGHHHHEEEE--EEESSCCTTCCSSHHHHHHHHHHHHTTCCSEEEEE--EEEEEETTEE
T ss_pred             hhHHHHHHHHHHHHHHhcCCHHHHHHHcCCC--eEEecCCCCCCCCHHHHHHHHHHHHHhCCCcEEEE--EEEEEECCEE
Confidence            4455678889999999999999999999998  33344543478999999999988887655545544  4577899988


Q ss_pred             EEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEec
Q 022429          247 WVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       247 vv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ++.+..+....|..  ++...+||-+||  ||+.+..
T Consensus       108 ~~~~~~~gt~~G~~v~~~~~~i~r~~dG--kI~e~~~  142 (159)
T 3k0z_A          108 TARLSFTGTHNDKKIDFFAIDILHVKDG--KITEDWH  142 (159)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEEECCeEEEEEEEEEEEEECC--EEEEEEE
Confidence            88776655434433  567889999988  5666654

>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20

Probab=98.61  E-value=5.8e-07  Score=73.68  Aligned_cols=107  Identities=10%  Similarity=0.085  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-------CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-------ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV  241 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-------~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v  241 (297)
                      ....++.++||+|+++||++++.+++++|...  ..|+.       ....|++++++.|+.+.+.-+.  ..++..++..
T Consensus         4 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~--~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~--~~~~~~~~~~   79 (143)
T 3dm8_A            4 HSLWRFSRALHRALNDRQTEELATIIDDNIDW--AIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRI--YRYHRESVML   79 (143)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHEEEEEEE--EEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEE--EEEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHhcCCCeEE--EecCCCCcCCCCccccCHHHHHHHHHHHHHhcCc--ceEEEEEEEE
Confidence            35678899999999999999999999999533  22321       2478999999999877765332  3344445678


Q ss_pred             eCCEEEEEEEeeeEe-CCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          242 LTDIAWVTMKTYIDI-DTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       242 ~gDvAvv~~~e~v~~-~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      .||.+++.+...... .+| +  +....+|+-+||  ||+.++.
T Consensus        80 ~gd~v~v~~~~~~~~~~tG~~~~~~~~~~~~v~dG--kI~~~r~  121 (143)
T 3dm8_A           80 GIDSAASMVRYSLTAAGTNRPISVRMALFTQFQNG--RLTNLRM  121 (143)
T ss_dssp             CSSEEEEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             cCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEECC--EEEEEEE
Confidence            899877666655443 334 3  478889999999  5666664

>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8

Probab=98.60  E-value=1e-06  Score=72.13  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      ..+++.++||+|+++||++++.+++++|  ++...|+++.+.|++++++.|+.++...   .+.++...+...||.+++.
T Consensus        16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D--~v~~~~~~~~~~G~~~i~~~~~~~~~~~---~~~~~i~~~~~~g~~vv~~   90 (149)
T 2bng_A           16 EAIRAVEAFLNALQNEDFDTVDAALGDD--LVYENVGFSRIRGGRRTATLLRRMQGRV---GFEVKIHRIGADGAAVLTE   90 (149)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTTEEEECHHHHHHHHHTTTTTC---EEEEEEEEEEEETTEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHcCCC--EEEEeCCCCCccCHHHHHHHHHHHHhhc---CcEEEEEEEEEeCCEEEEE
Confidence            4567889999999999999999999999  3444566667899999999888765432   3455556677899987766


Q ss_pred             EEeeeEeCCC--ceEEEEEEEEeCCeEEEEEEe
Q 022429          250 MKTYIDIDTG--PFNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       250 ~~e~v~~~~g--~lraT~VfrR~dG~WrlvhhH  280 (297)
                      .......+|.  .+....+|+-+||...-...+
T Consensus        91 ~~~~~~~~G~~~~~~~~~~~~v~dGkI~~~~~y  123 (149)
T 2bng_A           91 RTDALIIGPLRVQFWVCGVFEVDDGRITLWRDY  123 (149)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEECCeEEEEEEEEEEEEECCEEEEEEEE
Confidence            5543433333  367888999999965444344

>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11

Probab=98.57  E-value=1.5e-06  Score=71.72  Aligned_cols=111  Identities=8%  Similarity=0.063  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC----CCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL----FSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL  242 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~----l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~  242 (297)
                      ...+..++.++||+|+++||++++.++|++|  ++...|++.+    +.|++++++.|+....... ..++++...+.+.
T Consensus        27 ~~~~~~~~v~~~~~a~~~gD~~~l~~l~a~D--~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~-~~~~~~i~~~~~~  103 (156)
T 1tuh_A           27 EAEQNAETVRRGYAAFNSGDMKTLTELFDEN--ASWHTPGRSRIAGDHKGREAIFAQFGRYGGETG-GTFKAVLLHVLKS  103 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEECSSSTTCEEEESHHHHHHHHHHHHHTTT-TCCEEEEEEEEEC
T ss_pred             CcchHHHHHHHHHHHHhCCCHHHHHHhcCCC--EEEEccCCCCccceEcCHHHHHHHHHHHHhhcC-CceEEEEEEEEEc
Confidence            3455678889999999999999999999999  4445565544    5899999998888544321 1344455557788


Q ss_pred             CC-EEEEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429          243 TD-IAWVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       243 gD-vAvv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      || .+++.+......+|..  ++.+.+|+.+||  ||+.+...
T Consensus       104 gd~~v~~~~~~~~~~~G~~~~~~~~~~~~~~dG--kI~~~~~~  144 (156)
T 1tuh_A          104 DDGRVIGIHRNTAERGGKRLDVGCCIVFEFKNG--RVIDGREH  144 (156)
T ss_dssp             TTSCEEEEEEEEEEETTEEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             CCCEEEEEEEEEEecCCcEEeeeeEEEEEEECC--EEEEEEEe
Confidence            99 7777666522223332  578899999998  67666643

>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0

Probab=98.56  E-value=1.1e-06  Score=71.45  Aligned_cols=113  Identities=12%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCC-C-CHHHHHHHHHHHhccCCCceeEEEE
Q 022429          159 NGWKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELF-S-GYNSVIQSWQIAFNWEQGVDFQVQD  236 (297)
Q Consensus       159 ~~WKelY~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l-~-Gr~aVr~sW~~if~~~~~~~vei~d  236 (297)
                      .+|+..=....+|+++.+.|.+++.++|.+.|.+.+.+|.....+. +|+.+ . ..+++.+..   ....+....+.+.
T Consensus         2 ~~~~~~~~d~~aI~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v---~~~~p~~~~~~~I   77 (125)
T 3duk_A            2 MSVKVSVDDIDGITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWH---NSNGPAKNVQSRI   77 (125)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHH---HHHCCCTTCEEEE
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHH---hccCCCCcccceE
Confidence            3566666788899999999999999999999999999997766554 34312 1 234444332   2212223344455


Q ss_pred             eEEEEeCCEEEEEEEeeeEeCCCceEEEEEE--EEeCCeEEEEE
Q 022429          237 VRARVLTDIAWVTMKTYIDIDTGPFNMTNVF--EFHNGQWYMVH  278 (297)
Q Consensus       237 l~V~v~gDvAvv~~~e~v~~~~g~lraT~Vf--rR~dG~Wrlvh  278 (297)
                      +.|.+.||+|.+..... ...+  .+.|+.|  .|.||+|||++
T Consensus        78 ~~I~i~gd~A~a~v~~~-~~~~--~~f~D~l~L~k~dg~WkIv~  118 (125)
T 3duk_A           78 TNIDIVGTVAHARVEAE-NWTN--FKFSDLFLLLKLDGKWTIVN  118 (125)
T ss_dssp             EEEEEETTEEEEEEEEE-CSSS--CCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEECCEEEEEEEEE-EcCC--CeEEEEEEEEEeCCEEEEEE
Confidence            67888999999986533 1112  3556666  99999999986

>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10

Probab=98.54  E-value=5.2e-07  Score=73.08  Aligned_cols=109  Identities=10%  Similarity=0.095  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC---CC-C-CCCCHHHHHHHHHHHhccCCCceeEE--EEeEEEEe
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA---SG-E-LFSGYNSVIQSWQIAFNWEQGVDFQV--QDVRARVL  242 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP---gg-~-~l~Gr~aVr~sW~~if~~~~~~~vei--~dl~V~v~  242 (297)
                      +.+++.++|++|++++|++++.+++++|.  +...|   .| + .+.|+++|++.|+..+...+  .+++  ..+.+.+.
T Consensus        11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~--~~~~p~~~~g~~~~~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~   86 (150)
T 1s5a_A           11 KACETLRKFMAYMLEKDMKSWTELWDENA--VFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIH--LSSFTAPTVYRSAD   86 (150)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECTTCCTTSCSEEESHHHHHHHHTTHHHHEE--EEEECCCEEEEBSS
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHhCCCCE--EEEeecCCCCCCccccCHHHHHHHHHHhhhcCC--cccceeEEEEEecC
Confidence            67788999999999999999999999994  33444   23 2 47899999998887775432  2333  23334567


Q ss_pred             CCEEEEEEEeeeEe-CCC---ceEEEEEEEEeCCeEEEEEEecC
Q 022429          243 TDIAWVTMKTYIDI-DTG---PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       243 gDvAvv~~~e~v~~-~~g---~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ||.+++.+...... .+|   .++.+.+|+.+||++.-...+..
T Consensus        87 gd~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~dGkI~~~~~~~d  130 (150)
T 1s5a_A           87 SNTVIAEFQCDGHVIETGLPYRQSYISVIETRDGRIVRYRDYWN  130 (150)
T ss_dssp             SSEEEEEEEEEEEETTTCCBCCCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEEcCCCCEEEEEEEEEEEEeCCEEEEEEEeeC
Confidence            88888877766543 233   37889999999997666555544

>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=98.54  E-value=2.3e-06  Score=70.25  Aligned_cols=106  Identities=12%  Similarity=0.109  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv  248 (297)
                      ....++.++||+|+++||++++.+++++|.  +...| +....|++++++.|+.++...+...+++.  ++...||.+++
T Consensus         4 ~~~~~~v~~~~~a~~~~d~~~~~~~~a~D~--v~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~i~--~~~~~gd~v~~   78 (152)
T 2gex_A            4 TANKERCLEMVAAWNRWDVSGVVAHWAPDV--VHYDD-EDKPVSAEEVVRRMNSAVEAFPDLRLDVR--SIVGEGDRVML   78 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECT-TSCEECHHHHHHHHHHHHHHCTTCEEEEE--EEEEETTEEEE
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHcCCCe--EEeCC-CCCCCCHHHHHHHHHHHHHhCCCcEEEEE--EEEEeCCEEEE
Confidence            445678899999999999999999999994  33454 34688999999999888876555555554  47788998888


Q ss_pred             EEEeeeEe--------CCC---ceEEEEEEEEeC-CeEEEEEEec
Q 022429          249 TMKTYIDI--------DTG---PFNMTNVFEFHN-GQWYMVHHHS  281 (297)
Q Consensus       249 ~~~e~v~~--------~~g---~lraT~VfrR~d-G~WrlvhhHa  281 (297)
                      .+....+.        .+|   .++...+|+.+| |  ||+.+..
T Consensus        79 ~~~~~gt~~g~~~G~~~tG~~~~~~~~~~~~~~d~G--kI~e~~~  121 (152)
T 2gex_A           79 RITCSATHQGVFMGIAPTGRKVRWTYLEELRFSEAG--KVVEHWD  121 (152)
T ss_dssp             EEEEEEECCSCBTTBCCCCCEEEEEEEEEEEECTTS--CEEEEEE
T ss_pred             EEEEEEEecCCcCCcCCCCCEEEEEEEEEEEEecCC--EEEEEEE
Confidence            77765442        123   268889999998 7  6666554

>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}

Probab=98.54  E-value=1.6e-06  Score=71.83  Aligned_cols=114  Identities=11%  Similarity=0.098  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCh-hhhhhhhccCCceeeecCCCC---CCCCHHHHHHHHHHHhccCCCceeEEEE
Q 022429          161 WKAYYAATRAVVNVNAEFFNIIRERSL-PAMSRFWLNADYVKCIHASGE---LFSGYNSVIQSWQIAFNWEQGVDFQVQD  236 (297)
Q Consensus       161 WKelY~~t~aI~aa~~aFy~A~~agDl-dam~alWaddd~V~cvhPgg~---~l~Gr~aVr~sW~~if~~~~~~~vei~d  236 (297)
                      -..+|..+..++++.++|++++++||. ++++.+|++|  ++...|.++   ...|++++++.++.+.+....  ..++.
T Consensus        12 ~~~~~~~~~~~kevv~r~~e~~~~gd~~~~l~~lya~D--~v~~dp~~~~~~~~~G~eai~~~~~~~~~~~~~--~~~~i   87 (136)
T 3hk4_A           12 HENLYFQGMTIAEIAKDFTELLKQGDNAGAAEKYNADD--IASYEAMEGPMAVSHGKEALRQKSQWWQENHEV--HGGSV   87 (136)
T ss_dssp             -------CCCHHHHHHHHHHHHHTTCHHHHHHHHEEEE--EEEECSSCSTTSEEESHHHHHHHHHHHHHTEEE--EEEEE
T ss_pred             hhhhHhccccHHHHHHHHHHHHHcCCcHHHHHHHCCCC--EEEEcCCCCCccccCCHHHHHHHHHHHHhcCCe--eeeee
Confidence            357899999999999999999999997 5789999999  444555332   478999999977644443321  22333


Q ss_pred             eEEEEeCCEEEEEEEeeeEeC--CCc--eEEEEEEEEeCCeEEEEEEe
Q 022429          237 VRARVLTDIAWVTMKTYIDID--TGP--FNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       237 l~V~v~gDvAvv~~~e~v~~~--~g~--lraT~VfrR~dG~WrlvhhH  280 (297)
                      ..+.+.||.+++......+..  |.+  +....||+-+||  ||+.+.
T Consensus        88 ~~~~v~gd~v~v~~~~~gth~~tG~~i~~~~i~v~rv~DG--kIv~~r  133 (136)
T 3hk4_A           88 EGPYVNGDQFALRFKFDVTPKATGERVTMDEVGLYTVKNG--KITEER  133 (136)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTTCCCEEEEEEEEEEEETT--EEEEEE
T ss_pred             cceEEcCCEEEEEEEEEEEECCCCcEEEEEEEEEEEEECC--EEEEEE
Confidence            446778998888777665543  444  577889999998  466553

>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10

Probab=98.53  E-value=2.5e-06  Score=69.78  Aligned_cols=110  Identities=7%  Similarity=-0.040  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC---CCCCCHHHHHHHHHHHhccCCCceeEEE-EeEEEEeC
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG---ELFSGYNSVIQSWQIAFNWEQGVDFQVQ-DVRARVLT  243 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg---~~l~Gr~aVr~sW~~if~~~~~~~vei~-dl~V~v~g  243 (297)
                      .+.++++.++|++|+++||++++.+++++|.  +...|++   ..+.|+++|++.|+.+..... ..++++ ...+...|
T Consensus        11 ~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~--v~~~pg~~~~g~~~G~~~v~~~~~~~~~~~~-~~~~~~~v~~~~~~G   87 (134)
T 3dmc_A           11 LKVAHQGFEFFTQGLATGEWQKFLDMLTEDF--TFWFPMGEFHGLNVGKERAKEFFTYVSESFH-TGIQISSLDRVTSNE   87 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCHHHHTTEEEEE--EEEESSGGGBEEEESHHHHHHHHHHHHHTCT-TCEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHcCCCE--EEEecCCCCCccchhHHHHHHHHHHHHHhhc-CCceeEEEEEEEecC
Confidence            4557889999999999999999999999994  4455665   367899999998887775432 134555 34478899


Q ss_pred             CEEEEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429          244 DIAWVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       244 DvAvv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      |.+++.........+.+  ..+..+|+-+||+  |++.+.-
T Consensus        88 ~~vvve~~~~g~~~g~~y~~~~~~~f~v~dGk--I~~~r~Y  126 (134)
T 3dmc_A           88 TTVVFEFRDEGLFLGKPYKNRVAVSFDVRGDK--ICSYREY  126 (134)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEETTE--EEEEEEE
T ss_pred             CEEEEEEEEEEEEcCcEeeccEEEEEEEECCE--EEEEEEE
Confidence            98887776444433433  3578888888994  5555543

>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.51  E-value=1.7e-06  Score=69.29  Aligned_cols=104  Identities=13%  Similarity=0.273  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC----CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA----SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL  242 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP----gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~  242 (297)
                      ..++-+++.++||+|++++|++++.++|++|...  ..|    .+..+.|++++++.|+. +...+...+++  ..+.+.
T Consensus        15 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~--~~p~~~~~g~~~~G~~~i~~~~~~-~~~~~~~~~~i--~~~~~~   89 (129)
T 3fh1_A           15 RSEQTAEIMRRFNDVFQLHDPAALPELIAEECVI--ENTVPAPDGARHAGRQACVQLWSA-IATQPGTRFDL--EETFVA   89 (129)
T ss_dssp             THHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEE--ECSCSTTTCCEEESHHHHHHHHHH-HHHCTTCEEEE--EEEEEE
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHhcCCCEEE--ECCCCCCCCCcccCHHHHHHHHHH-HhcCCCceEEE--eEEEEc
Confidence            3456678899999999999999999999999433  333    24456899999999988 65544444544  456788


Q ss_pred             CCEEEEEEEeeeEeCCC--ceEEEEEEEEeCCeEEEEEEe
Q 022429          243 TDIAWVTMKTYIDIDTG--PFNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       243 gDvAvv~~~e~v~~~~g--~lraT~VfrR~dG~WrlvhhH  280 (297)
                      ||.+++......   |+  .++...+|+-+||  ||+.+.
T Consensus        90 gd~v~~~~~~~~---G~~~~~~~~~~~~~~dG--kI~e~~  124 (129)
T 3fh1_A           90 GDRATIRWRYWM---ADGNSVRGVNLMRVQDG--RIVEAM  124 (129)
T ss_dssp             TTEEEEEEEEEC---TTSCEEEEEEEEEEETT--EEEEEE
T ss_pred             CCEEEEEEEEEC---CCeeEEeceEEEEEcCC--EEEEEE
Confidence            998877665432   22  3677889998888  455544

>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}

Probab=98.50  E-value=6.5e-07  Score=74.39  Aligned_cols=114  Identities=11%  Similarity=0.076  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE
Q 022429          161 WKAYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR  240 (297)
Q Consensus       161 WKelY~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~  240 (297)
                      -..+|.+-.+++++.++||+|++++|++++.+++++|..  ...|.+..+.|++++++.|+.+++..   ..+++++.+.
T Consensus        12 ~~~~~~~~~~~~~lv~~~~~a~~~~D~~~l~~l~a~D~v--~~~p~g~~~~G~e~i~~~~~~~~~~~---~~~~~~~~~~   86 (151)
T 3f7x_A           12 HENLYFQGMTATELVNAYYAAFNAGDMPAFLALLSEDVI--HDINQGERQMGKARFAAFMEKMNRCY---RERLADIVVM   86 (151)
T ss_dssp             -------CCCHHHHHHHHHHHHHHTCHHHHHHTEEEEEE--EECTTSCEEESHHHHHHHHHHHHHHE---EEEEEEEEEE
T ss_pred             cccceecCHHHHHHHHHHHHHHHcCCHHHHHHhcCCCEE--EECCCCCCcCCHHHHHHHHHHHHHhh---ccceeEEEEE
Confidence            356888899999999999999999999999999999943  33455567899999999888777542   3445554333


Q ss_pred             --EeCCEEEEEEEeeeE---------eCCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          241 --VLTDIAWVTMKTYID---------IDTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       241 --v~gDvAvv~~~e~v~---------~~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                        ..||.+++.......         ..+| +  ++...+|+-+||+  |+.++.
T Consensus        87 ~~~~gd~v~~~~~~~gt~~g~~~G~p~~tG~~~~~~~~~~~~~~dGk--I~~~~~  139 (151)
T 3f7x_A           87 QNADGSRAAAEFTVHGQYLADDEGLPTANGQTYVLPAGAFFYIHCGK--IARVTN  139 (151)
T ss_dssp             ECTTSSEEEEEEEEEEEECSCCTTSCCCSSCEEEEEEEEEEEEETTE--EEEEEE
T ss_pred             EecCCCEEEEEEEEEEEEeccCCCCcCCCCCEEEEEEEEEEEEECCE--EEEEEE
Confidence              468887776665544         1223 2  5778899999984  555443

>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9

Probab=98.49  E-value=3.9e-06  Score=69.58  Aligned_cols=106  Identities=10%  Similarity=0.122  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv  248 (297)
                      .+.+++.++||++++++|++++.++|++|.  +...| + ...|++++++.|+.+++..+...+++.  ++...||.+++
T Consensus         4 ~~~~~~v~~~~~a~~~~D~~~~~~~~a~D~--v~~~p-~-~~~G~~~~~~~~~~~~~~~~~~~~~i~--~~~~~gd~v~~   77 (158)
T 2gey_A            4 AERKALCLEMVAAWNRWDLSGIIKHWSPDI--VHYSE-D-NEVSSADMVKLMEGGLKAFPDLQLEVK--SIMAEEDRVAL   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHTTEEEEE--EEEET-T-EEECHHHHHHHHHHHHHHSTTCEEEEE--EEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHcCCCe--EEeCC-C-CCCCHHHHHHHHHHHHHhCCCcEEEEE--EEEEeCCEEEE
Confidence            345678899999999999999999999994  33335 3 578999999999988876555555554  47789998888


Q ss_pred             EEEeeeEe--------CCC---ceEEEEEEEEeCCeEEEEEEecC
Q 022429          249 TMKTYIDI--------DTG---PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       249 ~~~e~v~~--------~~g---~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .+......        .+|   .++.+.+|+.+||  ||+.+...
T Consensus        78 ~~~~~gt~~g~~~G~~~tG~~~~~~~~~~~~~~dG--kI~e~~~~  120 (158)
T 2gey_A           78 RITVTATHQGEFMGVQPTGQRVSWHLVEELRFVDG--KVVEHWDV  120 (158)
T ss_dssp             EEEEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             EEEEEEEecCCCCCcCCCCCEEEEEEEEEEEEECC--EEEEEEEe
Confidence            77655432        123   2578999999988  67766543

>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}

Probab=98.48  E-value=8.8e-07  Score=75.63  Aligned_cols=107  Identities=16%  Similarity=0.224  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC--CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe--
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS--GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL--  242 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg--g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~--  242 (297)
                      .++.++++.++||+|+++||+++|+.+|++|. +....|+  +....|+++|++.|+.++... ...++++.  +.+.  
T Consensus         8 s~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~-v~~~p~~~p~~~~~Greai~~~f~~~~~~~-d~~~~~e~--i~v~~d   83 (156)
T 3g16_A            8 SRAAMEKVIRTYYDGCNEADEAKMIACFVPEA-VHYFPAGMYGGAFRGAAQIAHRWRTAVETL-GSYWTIDA--LVIDAE   83 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE-EEECBTTSTTSCEESHHHHHHHHHHHHHHH-CEEEEEEE--EEEETT
T ss_pred             cchhHHHHHHHHHHHHHcCCHHHHHHhcCCCE-EEecCCCCCCCCccCHHHHHHHHHHHHhhc-CceEEEEE--EEEecC
Confidence            45778999999999999999999999999994 3233332  446789999999999888664 33444444  5555  


Q ss_pred             CCEEEEEEEeeeEeCCCceEEEEEEEE--eCCeEEEE
Q 022429          243 TDIAWVTMKTYIDIDTGPFNMTNVFEF--HNGQWYMV  277 (297)
Q Consensus       243 gDvAvv~~~e~v~~~~g~lraT~VfrR--~dG~Wrlv  277 (297)
                      |+.|++...-+.+..|..++...+|+-  +||.=.-+
T Consensus        84 G~~av~Ewt~~~T~~g~~~~~~~~f~f~~~DGKI~~~  120 (156)
T 3g16_A           84 TAEAAIEWTHFKTNQDKVLRGAECVEFDRASGLIREI  120 (156)
T ss_dssp             TTEEEEEEEEEEGGGTEEEEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEEEEEeCCCeeEecceEEEEEecCCEEEEE
Confidence            888876554442222345777778777  67754433

>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}

Probab=98.47  E-value=3.8e-06  Score=67.24  Aligned_cols=104  Identities=12%  Similarity=0.021  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE--EeCCEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR--VLTDIAWV  248 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~--v~gDvAvv  248 (297)
                      .+++.++||+|++++|++++.+++++|.  +...|++....|++++++.|+.+....   ...++++.+.  ..||.+++
T Consensus        10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~--~~~~p~~~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~gd~v~~   84 (140)
T 3i0y_A           10 ATGLVQAYYEAFNRGDWDAMLAFLAEDV--AHDLNQGPREIGRAAFASFLQRMNDSY---REQLRDIVVTANDEGTRVGA   84 (140)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHTEEEEE--EEECTTSCEEESHHHHHHHHHHHHHHE---EEEEEEEEEEECTTSSEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHcCCcE--EEEcCCCCceEcHHHHHHHHHHHhhhc---chhhhheeeeecccCCEEEE
Confidence            4578899999999999999999999994  334455667899999999877765432   2345555444  35888777


Q ss_pred             EEEeeeE---------eCCC---ceEEEEEEEEeCCeEEEEEEec
Q 022429          249 TMKTYID---------IDTG---PFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       249 ~~~e~v~---------~~~g---~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ....+..         ..+|   .++...+|+-+||+  |+.++.
T Consensus        85 ~~~~~gt~~g~~~g~p~~tG~~~~~~~~~~~~~~dGk--I~~~~~  127 (140)
T 3i0y_A           85 EYVVHGVYHTTDEGLPDANGQTYVLPGGAFFDVRDGQ--ITRVTN  127 (140)
T ss_dssp             EEEEEEEECSCCTTSSCCSCEEEEEEEEEEEEEETTE--EEEEEE
T ss_pred             EEEEEEEeecccCCCcCCCCCEEEEEeeEEEEEECCE--EEEEEE
Confidence            6665543         1223   26788999999995  445443

>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}

Probab=98.46  E-value=4.9e-06  Score=68.96  Aligned_cols=119  Identities=6%  Similarity=0.029  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhh-hhhhccCCceeeecC--CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAM-SRFWLNADYVKCIHA--SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL  242 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam-~alWaddd~V~cvhP--gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~  242 (297)
                      ....+|+++..+|..++.++|.+.+ ..+|++|..+-.-..  ......|++++.+.+...+.........+..+.|.+.
T Consensus         8 ~Dr~~I~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~t~H~~~n~~I~vd   87 (159)
T 4gb5_A            8 TDRAEIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMPPMTVPLSDYGAALRASFGAFSATHHAITGHVVTID   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCCCEEECHHHHHHHHHHHHTTCSEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCcccccHHHHHHHHHHHhccCCceEEEecCCceEEEc
Confidence            3567899999999999999999876 579999853321111  1234678999999988887655445677888889999


Q ss_pred             CCEEEEEEEeeeE--e-----C-CCc-----eEEEEEEEEeCCeEEEEEEecCCC
Q 022429          243 TDIAWVTMKTYID--I-----D-TGP-----FNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       243 gDvAvv~~~e~v~--~-----~-~g~-----lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      ||.|...+.-...  .     . ++.     -++...|+|++|+|||.+..-.+.
T Consensus        88 gD~A~~~~~~~a~~~~~~~~~~~~~~~~~~~G~Y~d~~~r~~g~Wri~~r~~~~~  142 (159)
T 4gb5_A           88 SDRATIHAHVRAEHWLPAEVAGDGPDRWLVVGFYDNEAVRTADGWRLSSVKLTAS  142 (159)
T ss_dssp             TTEEEEEEEEEEEEECCHHHHTTSCCEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEEeeccccCCCCceEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence            9988776543321  1     1 221     378899999999999999876654

>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=98.45  E-value=2.6e-06  Score=68.64  Aligned_cols=105  Identities=8%  Similarity=-0.034  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCC-CCHHHHHHHHHHHhccCC-CceeEEEEeEEEEeCCEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELF-SGYNSVIQSWQIAFNWEQ-GVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l-~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~v~gDvAvv  248 (297)
                      -.++.++||++++++|++++.+++++|.  +...|++... .|++++++.|+.+++..+ ...+++  .++...||.+++
T Consensus         4 ~~~~v~~~~~a~~~~d~~~~~~~~a~d~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~gd~v~~   79 (144)
T 1sjw_A            4 QTEIVRRMVSAFNTGRTDDVDEYIHPDY--LNPATLEHGIHTGPKAFAQLVGWVRATFSEEARLEE--VRIEERGPWVKA   79 (144)
T ss_dssp             HHHHHHHHHHHHHHCCCTTGGGTEEEEE--ECGGGGGGTCCSHHHHHHHHHHHHHHHHCTTCEEEE--EEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHcCcCe--EEccCCCCCCCCCHHHHHHHHHHHHHhCCCCcEEEE--EEEEEeCCEEEE
Confidence            3567889999999999999999999983  3334433333 899999999988876544 445554  447788998777


Q ss_pred             EEEeeeEe--------CCCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          249 TMKTYIDI--------DTGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       249 ~~~e~v~~--------~~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ....+...        .+|.   ++...+|+-+||  ||+.++.
T Consensus        80 ~~~~~gt~~g~~~G~~~tG~~~~~~~~~~~~~~dG--kI~~~~~  121 (144)
T 1sjw_A           80 YLVLYGRHVGRLVGMPPTDRRFSGEQVHLMRIVDG--KIRDHRD  121 (144)
T ss_dssp             EEEEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEecCCCCCcCCCCCEEEEEEEEEEEEECC--EEEEEEE
Confidence            76655442        1232   577889999998  5666654

>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}

Probab=98.45  E-value=5.6e-07  Score=71.46  Aligned_cols=97  Identities=13%  Similarity=0.176  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC------C--CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA------S--GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRA  239 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP------g--g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V  239 (297)
                      +++++++.++|++|++++|++++.++|++|...  ..|      +  +..+.|+++|++.|+..++..+...+++..  +
T Consensus         7 ~~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~--~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~--~   82 (122)
T 3h3h_A            7 QAFAQQFSREWIDAWNAHDLDAILSHYADGFEM--SSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIA--T   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE--ECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEE--E
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHhcCCCEEE--ECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEE--E
Confidence            456788999999999999999999999999543  333      1  257899999999999998766556666654  4


Q ss_pred             EEeCCEEEEEEEeeeEeCCCceEEEEEEEE-eCCe
Q 022429          240 RVLTDIAWVTMKTYIDIDTGPFNMTNVFEF-HNGQ  273 (297)
Q Consensus       240 ~v~gDvAvv~~~e~v~~~~g~lraT~VfrR-~dG~  273 (297)
                      ...++...+.+..    .+|. ++..+|+- +||+
T Consensus        83 ~~~~~~~~~~~~~----~~G~-~~~~~~~~~~dGk  112 (122)
T 3h3h_A           83 LAGVDSVAIHYRG----AKGR-LALEVFHFGPDRR  112 (122)
T ss_dssp             EECSSEEEEEEEC----GGGC-EEEEEEEECTTSS
T ss_pred             EecCcEEEEEEEC----CCCC-EEEEEEEECCCCc
Confidence            5567765555542    1232 34788998 6774

>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0

Probab=98.45  E-value=1.5e-06  Score=69.30  Aligned_cols=107  Identities=8%  Similarity=-0.033  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC----CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg----~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      ..-+++.++||+|+++||++++.+++++|.  +...|++    ..+.|++++++.|+.++...+..  .++..++...||
T Consensus         5 ~~~~~~v~~~~~a~~~~d~~~~~~l~a~D~--~~~~p~~~p~~g~~~G~~~i~~~~~~~~~~~~~~--~~~~~~~~~~gd   80 (135)
T 3fgy_A            5 QENVQIVKDFFAAMGRGDKKGLLAVSAEDI--EWIIPGEWPLAGTHRGHAALAALLQKASEMVEIS--YPEPPEFVAQGE   80 (135)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHTEEEEE--EEEECSSSTTCEEEEHHHHHHHHHHHHHHHEEEE--CSSCCEEEEETT
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHhcCCCe--EEEEcCCCccceEEeCHHHHHHHHHHHHHhhCcc--eeeeEEEEEcCC
Confidence            345678899999999999999999999994  3344442    24689999999888877643322  234445678899


Q ss_pred             EEEEEEEeeeEe-CCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          245 IAWVTMKTYIDI-DTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       245 vAvv~~~e~v~~-~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      .+++.+...... .+| .  ++...+|+-+||  ||+.++.
T Consensus        81 ~v~v~~~~~~~~~~~G~~~~~~~~~~~~~~dG--kI~~~~~  119 (135)
T 3fgy_A           81 RVLVVGFATGRVKSTNRTFEDDWVFAITVRKS--KVTSIRE  119 (135)
T ss_dssp             EEEEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEeEEEcCCCCEecccEEEEEEEECC--EEEEEEE
Confidence            888777665543 233 3  566889999888  6777664

>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}

Probab=98.45  E-value=2.2e-06  Score=69.18  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCC-CHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFS-GYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~-Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      ...+|+++.+.|.+++.++|.+.|.+.+.+|.....+. +|+... ..++..+ -. ............+.+.|.+.||+
T Consensus         7 d~~aI~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~~~~~~~~~~~-v~-~~p~~~~~~~~~~i~~I~i~gd~   83 (120)
T 3fka_A            7 HIAALTALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGELLWNSRDAFIA-MC-EDAADAETDPFWAISSVSVQGDI   83 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEEEEEEHHHHHH-HH-HHHCCSSCCCCEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcEEEcCHHHHHh-hc-CCccCCCCCceEEEEEEEEECCE
Confidence            56779999999999999999999999999998776665 343222 2233333 22 11111122344556678889999


Q ss_pred             EEEEEEeeeEeCCCceEEEEEE--EEeCCeEEEEEE
Q 022429          246 AWVTMKTYIDIDTGPFNMTNVF--EFHNGQWYMVHH  279 (297)
Q Consensus       246 Avv~~~e~v~~~~g~lraT~Vf--rR~dG~Wrlvhh  279 (297)
                      |.+......  .+  .+.|+.|  .|.||+|||++-
T Consensus        84 A~a~v~~~~--~~--~~f~D~~~L~k~dg~WkIv~K  115 (120)
T 3fka_A           84 AMLHVENDW--AG--MRFDDFLTVLLHEGSWRIVSK  115 (120)
T ss_dssp             EEEEEEEEE--TT--EEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEc--CC--CceEEEEEEEEeCCEEEEEEE
Confidence            999877432  12  4567766  999999999863

>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10

Probab=98.43  E-value=3.1e-06  Score=68.19  Aligned_cols=105  Identities=10%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC----CCCCCCHHHHH-HHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS----GELFSGYNSVI-QSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg----g~~l~Gr~aVr-~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      -+++.++||+|+++||++++.+++++|..  ...|+    +....|+++++ +.|+.++...+  .+.++..++...||.
T Consensus        14 ~~~~v~~~~~a~~~gD~~~~~~l~a~D~~--~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~gd~   89 (140)
T 3ec9_A           14 PYQIVADHYAASDRHDPAAMMADIAPAIE--WTEMAGFPCAGTYRSADEIVRNVFRRLGEEWD--GYTFKLDALHDAGDT   89 (140)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEE--EEECTTSTTCEEECSHHHHHHHTHHHHHHHEE--EEEEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhcCCCeE--EEEcCCCccceEEcCHHHHHHHHHHHHHhhCC--cceeEEEEEEEcCCE
Confidence            35678899999999999999999999943  34343    23568999996 45777665432  345555567788998


Q ss_pred             EEEEEEeeeEe-CCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          246 AWVTMKTYIDI-DTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       246 Avv~~~e~v~~-~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +++.+...... .+| .  .+...+|+-+||  ||+.++.
T Consensus        90 v~v~~~~~~~~~~tG~~~~~~~~~v~~v~dG--kI~~~~~  127 (140)
T 3ec9_A           90 VIGVGRYSGTYRRTGKSFECRVAHVWRVDAG--KIVHFEQ  127 (140)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEEEEcCCCCEEEeEEEEEEEEECC--EEEEEEE
Confidence            88887766553 233 3  467889999998  4655553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.41  E-value=1.1e-07  Score=86.51  Aligned_cols=50  Identities=22%  Similarity=0.282  Sum_probs=45.0

Q ss_pred             cchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcc
Q 022429           97 ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHK  146 (297)
Q Consensus        97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~  146 (297)
                      ...+..||+|++.+||+||+..|+++++.|||+|++++.+..+|+++.-.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~   55 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLT   55 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECT
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccc
Confidence            34578999999999999999999999999999999999999999987543

>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20

Probab=98.40  E-value=9.1e-06  Score=65.84  Aligned_cols=105  Identities=12%  Similarity=0.085  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      +.+.+++.++|++||+++|.+++.+++++|... ..++.++.+.|++++++.+..+...  .  ..++..++...||.++
T Consensus         4 ~~~~~~~v~~~~~a~~~~D~~~l~~llaeD~v~-~~P~~~~~~~Gr~~~~~~~~~~~~~--~--~~~~i~~~~a~G~~vv   78 (128)
T 3en8_A            4 EEKIREALNAHWQASAAGDFDAEHDIYDDDAIC-DYPQSGERILGRMNLQALRSHHPGK--P--AGFEVRRIQGEGNLWI   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHTTTEEEEEEE-EETTTTEEEESHHHHHHHHHHTTCS--C--SEEEEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHhcCCCEEE-ECCCCCCEEECHHHHHHHHHHCCCC--C--cceEEEEEEECCCEEE
Confidence            467789999999999999999999999999422 2334466789999999866543321  1  1234455788999888


Q ss_pred             EEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEec
Q 022429          248 VTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       248 v~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +.+....  .+..+.+..+|+-+||+  |++...
T Consensus        79 ~~~~~~~--~g~~~~~~~v~~v~dGk--I~~~~~  108 (128)
T 3en8_A           79 TEYSISY--NGRPAYTVSIMEFRNGK--VVHETQ  108 (128)
T ss_dssp             EEEEEEE--TTEEEEEEEEEEEETTE--EEEEEE
T ss_pred             EEEEEec--CCEEEEEEEEEEEcCCE--EEEEEE
Confidence            8776442  23356788899999984  555443

>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}

Probab=98.36  E-value=7.4e-06  Score=68.18  Aligned_cols=107  Identities=11%  Similarity=0.049  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHH-HHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFN-IIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~-A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      .+.+-+++..+||+ +++++|++++.+++++|  ++.-.|+  ...|++++++.|+.+++..+...  ++..++...||.
T Consensus        25 ~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D--~v~h~P~--~~~G~e~~~~~~~~~~~~~pd~~--~~i~~iiaeGD~   98 (148)
T 3g0k_A           25 EEQANHDLVIEMYNKVLIAMDSSAVDRYIAPG--YVQHSSL--AEPSVEALKGFLDRVRAESPDAR--QTIHRSFVDGDH   98 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEE--EEECCSS--SCSSHHHHHHHHHHHHHHCCSCE--EEEEEEEEETTE
T ss_pred             cHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcC--eEEcCCC--CCCCHHHHHHHHHHHHHhCCCce--EEEEEEEEECCE
Confidence            45667788999999 99999999999999988  3323343  35899999999988886554444  445568889998


Q ss_pred             EEEEEEeeeEeCCC-ceEEEEEEEEeCCeEEEEEEecC
Q 022429          246 AWVTMKTYIDIDTG-PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       246 Avv~~~e~v~~~~g-~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      +++.+..... .+| .+....+||-+||  ||+-|-..
T Consensus        99 V~~~~~~~~~-~~g~~~~~~difr~~dG--kIvEhWd~  133 (148)
T 3g0k_A           99 VITHTHVERW-PGDAGLAVVDIFRVEGG--MIVEHWDV  133 (148)
T ss_dssp             EEEEEEEECS-TTCCCEEEEEEEEEETT--EEEEEEEE
T ss_pred             EEEEEEEEEC-CCCccEEEEEEEEEECC--EEEEEccc
Confidence            8887765422 333 5788999999988  56555443

>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*

Probab=98.31  E-value=1.1e-05  Score=66.53  Aligned_cols=106  Identities=8%  Similarity=0.000  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC-CCCHHHHHHHHHHHhccCC-CceeEEEEeEEEEeCCEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL-FSGYNSVIQSWQIAFNWEQ-GVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~-l~Gr~aVr~sW~~if~~~~-~~~vei~dl~V~v~gDvAv  247 (297)
                      +-.++.++||++++++|++++..++++|.  +...|++.. ..|++++++.|+.+++..+ ...+++.  ++...||.++
T Consensus        12 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~--v~~~p~~~~~~~G~~~~~~~~~~~~~~~p~d~~~~i~--~~~~~gd~v~   87 (153)
T 2f99_A           12 EQIAAVRRMVEAYNTGKTDDVADYIHPEY--MNPGTLEFTSLRGPELFAINVAWVKKTFSEEARLEEV--GIEERADWVR   87 (153)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTGGGTEEEEE--ECGGGTTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEE--EEEEETTEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHhcCCCe--EEecCCCCCCCCCHHHHHHHHHHHHHHCCCCcEEEEE--EEEEeCCEEE
Confidence            34567789999999999999999999983  333454433 5899999999988876654 4555544  4678899877


Q ss_pred             EEEEeeeEe--------CCCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          248 VTMKTYIDI--------DTGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       248 v~~~e~v~~--------~~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +.+....+.        ..|.   +....+|+-+||  ||+.+..
T Consensus        88 ~~~~~~gt~~g~~~g~~~tG~~~~~~~~~~~~v~dG--kI~e~~~  130 (153)
T 2f99_A           88 ARLVLYGRHVGEMVGMAPTGRLFSGEQIHLLHFVDG--KIHHHRD  130 (153)
T ss_dssp             EEEEEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEecCCCCCcCCCCCEEEEEEEEEEEEECC--EEEEEEE
Confidence            776655432        1232   578889999998  5666554

>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}

Probab=98.29  E-value=1.2e-05  Score=64.07  Aligned_cols=98  Identities=9%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      +-+++.++|++|+++||++++.+++++|  ++...|++ .+.|++++.+.+..++.     .+++  ..+.+.|+.+++.
T Consensus         7 ~~~~~v~~f~~A~~~gD~~~l~~lla~D--vv~~~~~g-~~~G~~~v~~~~~~~~~-----~~~~--~~~~~~G~~v~~~   76 (114)
T 3f40_A            7 TTRDLVLEFIHALNTENFPAAKKRLNEN--FTFNGPMG-HREGSERYMNDMEKMKF-----KYVV--HKMFEEGNDVCLI   76 (114)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEEETTE-EEESHHHHHHHHHHHCC-----EEEE--EEEEEETTEEEEE
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHhcCCC--eEEECCCC-cccCHHHHHHHHHHHHh-----heEE--EEEEecCCcEEEE
Confidence            3467889999999999999999999998  55566655 67899999998776654     3333  3467789977664


Q ss_pred             EEeeeEeCCCceEEEEEEEEeCCeEEEEEEec
Q 022429          250 MKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       250 ~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ....  ..++.+.+..+|+-+||  ||+..+.
T Consensus        77 ~~~~--~~g~~~~~~~~~~v~dG--rI~~i~~  104 (114)
T 3f40_A           77 YDIN--MNGKTIAASGLYHLEKG--EITSLHV  104 (114)
T ss_dssp             EEEE--ETTEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEe--cCCcEeecceEEEEcCC--eEEEEEE
Confidence            4322  22344677778888888  5666653

>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0

Probab=98.28  E-value=9e-07  Score=70.73  Aligned_cols=106  Identities=11%  Similarity=0.078  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC----CCCCCHHHHHH-HHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYNSVIQ-SWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg----~~l~Gr~aVr~-sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      +++.++||+|+++||++++.+++++|..  ...|++    ....|++++++ .|+.+....+...+++.+++....||.+
T Consensus         7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~--~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v   84 (134)
T 3grd_A            7 LEIIRSTYEGSASSNAKHLAEALSEKVE--WTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMYHEVSGKDVI   84 (134)
T ss_dssp             HHHHHTTTSSCHHHHHHHHHHHEEEEEE--EEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEEEEBTTSSEE
T ss_pred             HHHHHHHHHHHhcCCHHHHHHhcCCCeE--EEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhheeeecCCCEE
Confidence            5678899999999999999999999943  333432    25689999985 5676665433334444444336788887


Q ss_pred             EEEEEeeeEe-CCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          247 WVTMKTYIDI-DTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       247 vv~~~e~v~~-~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ++.+...... .+| .  .+...+|+-+||  ||+.++.
T Consensus        85 ~v~~~~~~~~~~tG~~~~~~~~~v~~~~dG--kI~~~~~  121 (134)
T 3grd_A           85 IAEGMYSGVYKDTGKSFEAEFVHVWQLENG--KIVKFKQ  121 (134)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEeeEECCCCCEeeeeEEEEEEEECC--EEEEEEE
Confidence            7777766553 233 3  578889999998  5666654

>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}

Probab=98.23  E-value=9.7e-06  Score=65.95  Aligned_cols=105  Identities=12%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             HHHHHHHHHH-HHHhCC--hhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          171 VVNVNAEFFN-IIRERS--LPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       171 I~aa~~aFy~-A~~agD--ldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      -+++.++||+ +++++|  ++++..++++|. +....|. ....|++++++.|+.+++..+...+++.  ++...||.++
T Consensus        11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~-~~~~~~~-~~~~G~~~~~~~~~~~~~~~pd~~~~i~--~~~~~gd~v~   86 (146)
T 3kkg_A           11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGF-RSIFHSN-QAVEGIEQAIAFNAVLFEGFPRLEVVVE--NVTVEGDNVV   86 (146)
T ss_dssp             HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEE-EEEETTS-CCEESHHHHHHHHHHHHHHSTTCEEEEE--EEEEETTEEE
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCe-EEecCCC-CCCCCHHHHHHHHHHHHHhCCCceeEEE--EEEEeCCEEE
Confidence            4567889999 999999  999999999983 3222333 5789999999999888876555555554  5678899888


Q ss_pred             EEEEeeeEe--------CCCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          248 VTMKTYIDI--------DTGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       248 v~~~e~v~~--------~~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +.+....+.        ..|.   ++...+|+-+||  ||+.++.
T Consensus        87 ~~~~~~gt~~g~~~g~~~tG~~~~~~~~~~~~~~dG--kI~e~~~  129 (146)
T 3kkg_A           87 VQARLTGAQDGPFLGVPPSGQMVDVPDVTLFTLADG--QVIEMRY  129 (146)
T ss_dssp             EEEEEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEecCccCCcCCCCCEEEEEEEEEEEEECC--EEEEEEE
Confidence            877655442        1232   578889999988  5666654

>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}

Probab=98.21  E-value=2.1e-05  Score=62.56  Aligned_cols=103  Identities=9%  Similarity=0.061  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      ..+++.++||++++++|++++..+|++|.  + .|  + ...|++++++.|+..++..+...+++.+  +...||.+++.
T Consensus         4 ~~~~~v~~~~~~~~~~d~~~~~~~~a~d~--~-~~--~-~~~G~~~~~~~~~~~~~~~pd~~~~i~~--~~~~gd~v~~~   75 (128)
T 3ehc_A            4 TLNDIYLAYLDSLNHQAFDELGTFVDDNV--E-HN--G-RPFGLSGYRDMLVKDFADIPDLRFEAEI--LVSDATRLAAR   75 (128)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGGGGTEEEEE--E-ET--T-BCCHHHHHHHHHHHHHHHCTTCCCCEEE--EEECSSEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHhcCcce--E-eC--C-CCCCHHHHHHHHHHHHhhCCCceEEEEE--EEEECCEEEEE
Confidence            35678889999999999999999999983  2 24  2 5689999999998888766555565554  66789987777


Q ss_pred             EEeeeEe--------CCC-c--eEEEEEEEEeCCeEEEEEEecC
Q 022429          250 MKTYIDI--------DTG-P--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       250 ~~e~v~~--------~~g-~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ...+.+.        ..| +  ++...+||-+||  ||+.|...
T Consensus        76 ~~~~gt~~g~~~g~~~tG~~~~~~~~~~~~~~dG--kI~e~~~~  117 (128)
T 3ehc_A           76 LFFDCTPKSIFMDLPVNGRRVQFCEHVFYDFEQA--KIRRVWSV  117 (128)
T ss_dssp             EEEEECCSSEETTEECTTCCEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             EEEEEEEcCcccCCCCCCCEEEEEEEEEEEEeCC--EEEEEEEc
Confidence            6655431        123 2  567889999988  77777653

>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}

Probab=98.16  E-value=1.6e-05  Score=65.98  Aligned_cols=103  Identities=9%  Similarity=0.057  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE--eCCEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV--LTDIAWVT  249 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v--~gDvAvv~  249 (297)
                      .++.++||+|++++|++++.+++++|.. ... |.+....|++++++.|+.+++..+   -.+.++.+.+  .||.+++.
T Consensus        21 ~~~v~~~~~a~n~~D~~~l~~l~a~D~v-~~~-~~~~~~~G~e~i~~~~~~~~~~~~---~~~~~~~~~~~~~gd~v~~~   95 (150)
T 3f8h_A           21 NDTIARYFDAFNAGDTDGMLACLSEDVA-HHV-NEGNIRVGKEKFAAFCAHMSHCYK---EELTDMVIFATPDATRAAAE   95 (150)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHTTEEEEEE-EEE-ETTEEEESHHHHHHHHHHHHHHEE---EEEEEEEEEECTTSSEEEEE
T ss_pred             HHHHHHHHHHHHccCHHHHHHHcCCCeE-EeC-CCCcceeCHHHHHHHHHHHHHhCC---ccccceEEEEecCCCEEEEE
Confidence            4567889999999999999999999953 223 344578999999998887775432   2455555443  57876665


Q ss_pred             EEeeeEe---------CCCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          250 MKTYIDI---------DTGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       250 ~~e~v~~---------~~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      .......         .+|.   ++...+|+-+||  ||+.++.
T Consensus        96 ~~~~gt~~g~~~G~p~~tG~~v~~~~~~~~~~~dG--kI~~~~~  137 (150)
T 3f8h_A           96 YTVNGTYLATDEGLPEARQQSYKLPAGSFFDLRDG--LITRVTT  137 (150)
T ss_dssp             EEEEEEECSCCTTSCCCSSEEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEecCCCCCcCCCCCEEEEeeeEEEEEeCC--EEEEEEE
Confidence            5443331         1232   678899999998  4655554

>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10

Probab=98.14  E-value=5.3e-06  Score=69.34  Aligned_cols=107  Identities=9%  Similarity=0.062  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC---C--CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE--E
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS---G--ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR--V  241 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg---g--~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~--v  241 (297)
                      ...+++.++||+|++++|++++.+++++|...  ..|.   |  ..+.|+++|++.|+.++...+.  . +.++.+.  .
T Consensus        23 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~--~~P~~~~g~~~~~~G~~ai~~~~~~~~~~~~~--~-~~~~~~~~~~   97 (163)
T 1z1s_A           23 MNAKEILVHSLRLLENGDARGWCDLFHPEGVL--EFPYAPPGWKTRFEGRETIWAHMRLFPEHLTV--R-FTDVQFYETA   97 (163)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHTEEEEEEE--ECSSCCTTSCCEEESHHHHHHTTTTGGGTEEE--E-ECCCEEECCS
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHCCCCEEE--ECcCCCCCCCcccCCHHHHHHHHHHHHHhCcc--c-eeeeEEEEEe
Confidence            34567788999999999999999999999533  3331   2  2478999999987766553221  2 3333333  5


Q ss_pred             eCCEEEEEEEeeeEe--CCCc--eEEEEEEEEeCCeEEEEEEecC
Q 022429          242 LTDIAWVTMKTYIDI--DTGP--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       242 ~gDvAvv~~~e~v~~--~~g~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .||.+++.+......  .|..  +....+|+-+||  ||+.+...
T Consensus        98 ~g~~vv~~~~~~g~~~~tG~~~~~~~~~v~~v~dG--kI~~~~~y  140 (163)
T 1z1s_A           98 DPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDG--QILLYRDF  140 (163)
T ss_dssp             STTEEEEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             CCCEEEEEEEEEEEEeCCCCEEccceEEEEEecCC--EEEEEEee
Confidence            678888877766543  2333  567889999998  67776653

>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}

Probab=98.11  E-value=2.1e-05  Score=65.17  Aligned_cols=99  Identities=13%  Similarity=0.170  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      .+.++..++||+|+++||++++.++|++|.  +...|. +..+.|+++|++.|...+...+  .+++....+...|+.++
T Consensus         9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~--v~~~P~~~~~~~G~~~v~~~~~~~~~~~~--~f~~~~~~~~~dg~~~~   84 (143)
T 3mso_A            9 ANAAATLAEWHGLIARRDLSGLPRLLHPDA--VFRSPMAHKPYAGAPVVSMILNTVLTVFE--DFAYHRQLASADGRSVV   84 (143)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTGGGGEEEEE--EEECSSCSSCEESHHHHHHHHHHHHHHCE--EEEEEEEEEETTSSEEE
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhcCCCE--EEECCCCCCCccCHHHHHHHHHHHHhhCC--ceEEEEEEEccCCCEEE
Confidence            457888999999999999999999999994  444453 4678999999999988886543  45555433323566666


Q ss_pred             EEEEeeeEeCCCceEEEEEEEEe-CCe
Q 022429          248 VTMKTYIDIDTGPFNMTNVFEFH-NGQ  273 (297)
Q Consensus       248 v~~~e~v~~~~g~lraT~VfrR~-dG~  273 (297)
                      +.....+  +|..+....+++-. ||+
T Consensus        85 ~~f~~~~--~g~~v~Gv~v~~~~~dGk  109 (143)
T 3mso_A           85 LEFSARV--GERELKGIDMIRFDDDGR  109 (143)
T ss_dssp             EEEEEEE--TTEEEEEEEEEEECTTSC
T ss_pred             EEEEEEE--CCEEEEEEEEEEECCCCc
Confidence            6665443  23356777888875 563

>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}

Probab=98.04  E-value=6.9e-05  Score=60.70  Aligned_cols=107  Identities=12%  Similarity=0.040  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHH-HHHhCChhhhhhhhccCCceeeecCC---CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          170 AVVNVNAEFFN-IIRERSLPAMSRFWLNADYVKCIHAS---GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       170 aI~aa~~aFy~-A~~agDldam~alWaddd~V~cvhPg---g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      +-+++.++||+ +++++|++++..++++|..+ ...|+   .....|++++++.|+.+++..+...+++.  ++...||.
T Consensus         7 ~~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~-~~~p~~~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~--~~~~~gd~   83 (146)
T 3f9s_A            7 KAKEILTQFTREVWSEGNIEASDKYIAPKYTV-LHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQ--GLFADGDA   83 (146)
T ss_dssp             THHHHHHHHHHHHTTTCCGGGHHHHEEEEEEE-EECTTCTTTTCEECHHHHHHHHHHHHHHSTTCEEEEE--EEEEETTE
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHcCCCeee-ccCCCCCCCCCcCCHHHHHHHHHHHHhhCCCcEEEEE--EEEEeCCE
Confidence            45678889996 99999999999999998321 33443   23578999999998888776555555544  57788998


Q ss_pred             EEEEEEeeeEe--------CCCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          246 AWVTMKTYIDI--------DTGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       246 Avv~~~e~v~~--------~~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +++......+.        ..|.   ++...+||-+||+  |+.+..
T Consensus        84 v~~~~~~~gt~~g~~~g~~~tG~~~~~~~~~~~~~~dGk--I~e~~~  128 (146)
T 3f9s_A           84 VVMTWLWTATHKEDIPGFPSTGKQIKMSGATVYYFDGNR--LTGHWQ  128 (146)
T ss_dssp             EEEEEEEEEECCSCBTTBCCCCCEEEEEEEEEEEEEETE--EEEEEE
T ss_pred             EEEEEEEEEEecCCCCCcCCCCCEEEEEEEEEEEEECCE--EEEEEE
Confidence            77776655432        1232   5778899999884  666654

>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24

Probab=97.98  E-value=9e-06  Score=67.13  Aligned_cols=116  Identities=12%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHH-----hCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          172 VNVNAEFFNIIR-----ERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       172 ~aa~~aFy~A~~-----agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      .++.++||+.+.     .+|++.+.++|++|..+  . ++++...|+++|++.|+.+++..+...+.+....+...||.+
T Consensus         5 ~~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~--~-~~~~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~v~~~~gd~~   81 (131)
T 3er7_A            5 TTTLDRYFDLFDASRTDEKAFDDLISLFSDEITF--V-LNGQEQHGIDAWKQFVRMVFTANQDIKHMYAGWVPSETGDTM   81 (131)
T ss_dssp             -CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEE--E-ETTEEEESHHHHHHHHHHHHHHEEEEEEEECCCEECSSTTCE
T ss_pred             HHHHHHHHHHHhhccCCccCHHHHHHHhCCCeEe--c-CCCCCcCChHHHHHHHHHHHhhCcCceEEEEEEEEecCCCEE
Confidence            346788999997     36799999999999644  3 345568999999999998887654334434433224467777


Q ss_pred             EEEEEeeeEeCCC-c--eEEEEEEEEe-CCeEEEEEEecCCCCCCCcccccc
Q 022429          247 WVTMKTYIDIDTG-P--FNMTNVFEFH-NGQWYMVHHHSSVMLVDGEVEQQV  294 (297)
Q Consensus       247 vv~~~e~v~~~~g-~--lraT~VfrR~-dG~WrlvhhHaSp~~~~~~~~~~~  294 (297)
                      .+...-..+..+| .  ++.+.+|+-. ||  ||+.++..+-  ...+-|||
T Consensus        82 ~~~w~~~g~~~~G~~~~~~g~dv~~fd~dG--kI~~~~~~~d--~~~~~~q~  129 (131)
T 3er7_A           82 ETRWAVCGKSADGSVFTQDGTDIARLNADG--KIVYLANVPD--DTAMFNQY  129 (131)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEECTTS--CEEEEEEEEC--CC------
T ss_pred             EEEEEEEEEECCCCEEEEeeeEEEEEcCCC--cEEEEEEccC--hHHHHHHh
Confidence            7766666553334 3  6889999998 56  8999997754  55566665

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}

Probab=97.97  E-value=3.5e-05  Score=70.88  Aligned_cols=109  Identities=9%  Similarity=0.048  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      ..+++++.++|+++++++|++++.++|++|..+  ..| +.+.+.|+++|++.|+..+....  .+++..+...+.|+.+
T Consensus         5 ~~~~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~--~~P~~~~~~~Gr~ai~~~~~~~~~~~~--~~~~~~~~~~~~G~~v   80 (283)
T 3rga_A            5 ETVRKEVALEYCRRVNAGELEGVLQLFAPDARL--VDPLGTEPVVGRAALAARLAPALRGAV--HEEPGRPYAAHDGTSV   80 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHTEEEEEEE--ECSSSSCCEESHHHHHHHHHHHHHTTC--EEEECCCBCCSSSSEE
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEE--ECCCCCCCcCcHHHHHHHHHHHHhhcC--ceEEEEEEeeeeCCEE
Confidence            356788999999999999999999999999533  455 34578999999999988886653  3444443333678888


Q ss_pred             EEEEEeeeEeCCC------ceEEEEEEEEe-CCeEEEEEEecC
Q 022429          247 WVTMKTYIDIDTG------PFNMTNVFEFH-NGQWYMVHHHSS  282 (297)
Q Consensus       247 vv~~~e~v~~~~g------~lraT~VfrR~-dG~WrlvhhHaS  282 (297)
                      ++....++...+.      .+....+||-. +|  ||+.++.-
T Consensus        81 ~~~~~~~~~~~g~~~g~~v~~~gi~v~r~d~dG--kI~~~rdy  121 (283)
T 3rga_A           81 VLPATVTVGAPGAPPQRRGRTRVMGVIEVGEDG--LIREMRVM  121 (283)
T ss_dssp             EEEEEEEECSTTCCGGGCEEEEEEEEEEECTTS--CEEEEEEE
T ss_pred             EEEEEEEEEeCCCCccceEEEEEEEEEEECCCC--cEEEEEEE
Confidence            8887766653332      26889999995 66  57776543

>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}

Probab=97.97  E-value=6.5e-05  Score=69.06  Aligned_cols=112  Identities=11%  Similarity=0.018  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT  243 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g  243 (297)
                      +...++++++.++|+++++++|++++.++|++|.  +...| +.+.+.|+++|++.|+..+...  ....+.+..+...|
T Consensus       134 ~~~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~--v~~~P~~~~~~~G~~ai~~~~~~~~~~~--~~~~~~~~~~~~~g  209 (283)
T 3rga_A          134 APDEERRKELAREHCLRINDGDVDGLLKLYSPRI--RFEDPVGSWTRTGLEALRAHATMAVGSN--VRETAGLTVAGQDG  209 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEESSTTSCEEESHHHHHHHHHHHHHTT--CEEEEEEEEECTTS
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCe--EEECCCCCCcccCHHHHHHHHHHhhccC--cEEEEeeEEecCCC
Confidence            3567789999999999999999999999999994  33455 3457899999999999888762  22222222112468


Q ss_pred             CEEEEEEEeeeE------------------e--CCC---ceEEEEEEEEe-CCeEEEEEEecC
Q 022429          244 DIAWVTMKTYID------------------I--DTG---PFNMTNVFEFH-NGQWYMVHHHSS  282 (297)
Q Consensus       244 DvAvv~~~e~v~------------------~--~~g---~lraT~VfrR~-dG~WrlvhhHaS  282 (297)
                      +.|++...-+..                  .  .+|   .+....+|+-. +|  ||+.|..-
T Consensus       210 ~~aa~~~~~~~~y~~~g~~~~~~g~~~~~~p~~~~G~~~~~~g~~~~~~~~dG--kI~~~r~y  270 (283)
T 3rga_A          210 RHAAVTVSATMDYLPSGPLLARHHLMTLPAPADPHRALIGIEYVMVIGVDADG--LIDEMRAY  270 (283)
T ss_dssp             SEEEEEEEEEEESTTHHHHHHHTTSCCSCCCSCTTTCEEEEEEEEEEEECTTS--CEEEEEEE
T ss_pred             CEEEEEEEEEEEeecccccccccccccccCCcCCCCceEEEEEEEEEEECCCc--cEEEEEEe
Confidence            888888777665                  0  123   26778889985 67  67777554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.85  E-value=4.3e-06  Score=81.46  Aligned_cols=45  Identities=9%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             cchhhcccHHHHHHHhcCCC-hhhHhhhhccChHHHHHcCCchhhhhh
Q 022429           97 ASMMEQLVPEITTHALSYLD-YPSLCRLSMTNSLMRKAANDDNAWKAL  143 (297)
Q Consensus        97 ~~~l~~LP~Eil~~IlsyLd-~~sL~~~s~vcr~~~~~a~d~~lWr~l  143 (297)
                      .+.++.||+||+.+||+||+ .+|+.+++.|||+|+++  +...|+++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~--~~~~~~~l   48 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI--ERWCRRKV   48 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH--HHHHCCEE
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh--hhhhceEE
Confidence            46788999999999999999 99999999999999999  45566655

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=97.80  E-value=0.00021  Score=69.09  Aligned_cols=116  Identities=16%  Similarity=0.279  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC--CCCCCCCHHHHHHHHHHHhc-cCCCceeEEEEeEEEEeC
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGELFSGYNSVIQSWQIAFN-WEQGVDFQVQDVRARVLT  243 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP--gg~~l~Gr~aVr~sW~~if~-~~~~~~vei~dl~V~v~g  243 (297)
                      ...++....+.|.+++..||.+....+-.++  +++..|  -|..+.|.+-.+--++...+ .......++-+.+|++.|
T Consensus       316 ~~~e~~~~~~~~l~~i~~gD~~~y~~l~~~~--~t~fep~~~~~~~~g~~~~~f~~~~~~~~~~~~~~~~~~~p~v~~~~  393 (444)
T 3soa_A          316 RKQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMG  393 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSHHHHHHEEEE--EEEECGGGTTCEEEHHHHTHHHHHHTSTTCSSCCEEEEEEEEEEEET
T ss_pred             chHHHHHHHHHHHhhhhcCCchhhcccCCCC--CCccCcccccccccCcchhhhhhhcccccCCCcceEeecCCceEEec
Confidence            4466788889999999999999998887766  677776  35567787766665555433 334567889999999998


Q ss_pred             CE-EEEEEEeee-EeC--CCc----eEEEEEEEEeCCeEEEEEEecCCC
Q 022429          244 DI-AWVTMKTYI-DID--TGP----FNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       244 Dv-Avv~~~e~v-~~~--~g~----lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      |. |++++.-.. ..+  |++    ..=|.||.|.+|+|+.||.|-|..
T Consensus       394 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~w~~~h~h~~~~  442 (444)
T 3soa_A          394 DESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGA  442 (444)
T ss_dssp             TTEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred             CcceeeeeeeeeeeeccCCCccccchhhheeeeecCCceEEEEEecCCC
Confidence            75 777776332 222  322    355999999999999999999853

>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}

Probab=97.80  E-value=0.00025  Score=59.39  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      .+++++.++|++|+++||++++.++|++|.  +...|. ..++.|+++|++.|...+...  ..+++..  ..+.||-++
T Consensus        20 ~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dv--v~~~P~~~~~~~G~~av~~~~~~~~~~~--~~f~~~~--~~~~g~~~~   93 (148)
T 3f8x_A           20 AAVQSGLQEWHRIIAEADWERLPDLLAEDV--VFSNPSTFDPYHGKGPLMVILPAVFSVL--ENFQYAR--HFSSKSGYV   93 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGSGGGEEEEE--EEECSSCSSCEESHHHHHHHHHHHHHHC--EEEEEEE--EEECSSEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhCCCE--EEECCCCCCCcCCHHHHHHHHHHHHhhC--CCEEEEE--EEEeCCeEE
Confidence            567888999999999999999999999994  334453 457899999999999888654  2444433  556677665


Q ss_pred             EEEEeeeEeCCCceEEEEEEEEe-CC
Q 022429          248 VTMKTYIDIDTGPFNMTNVFEFH-NG  272 (297)
Q Consensus       248 v~~~e~v~~~~g~lraT~VfrR~-dG  272 (297)
                      +......  ++..+....+++-. ||
T Consensus        94 l~f~~~~--~g~~v~Gvdvl~~d~dG  117 (148)
T 3f8x_A           94 LEFNANM--GDELLTGVDLIEFNDAG  117 (148)
T ss_dssp             EEEEEEE--TTEEEEEEEEEEECTTS
T ss_pred             EEEEEEE--CCEEEEEEEEEEECCCC
Confidence            5544332  23346667777774 56

>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}

Probab=97.74  E-value=0.00013  Score=61.99  Aligned_cols=95  Identities=6%  Similarity=-0.002  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      ..++.++|++|+++||++++.+++++|.  +...| ...++.|+++|++.|..++...+  .++++  ...+.|+-+++.
T Consensus        20 ~~~~v~~f~~A~~~gD~~aL~~LlA~Dv--v~~sP~~~~p~~Gr~av~~~l~~~~~~~~--df~~~--~~~v~G~~avl~   93 (155)
T 3flj_A           20 MHPTIARMQEVVAKGDESLIHALLAEDV--RFMPPTYYKTWTGRDPVAAVLGHVGQVFS--EFRYR--RIMGEGKDWALE   93 (155)
T ss_dssp             CCHHHHHHHHHHTTTCHHHHHTTEEEEE--EEECSSSSCCEESHHHHHHHHHHHHHHEE--EEEEE--EEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHhcCCCE--EEECCCCCCCcCCHHHHHHHHHHHHhhCC--CcEEE--EEEEcCCEEEEE
Confidence            3457889999999999999999999994  43445 45678999999999988776432  33332  344789977776


Q ss_pred             EEeeeEeCCCceEEEEEEEE-eCCe
Q 022429          250 MKTYIDIDTGPFNMTNVFEF-HNGQ  273 (297)
Q Consensus       250 ~~e~v~~~~g~lraT~VfrR-~dG~  273 (297)
                      ...++  ++..+....+++- +||.
T Consensus        94 f~~~~--~g~~v~gvd~~~fdedGk  116 (155)
T 3flj_A           94 FQCKV--GELDAVGVDLITLNEGGL  116 (155)
T ss_dssp             EEEEE--TTEEEEEEEEEEECTTSS
T ss_pred             EEEEE--CCEEEEEEEEEEEcCCCC
Confidence            55433  3445677788887 4664

>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19

Probab=97.68  E-value=0.00038  Score=55.41  Aligned_cols=104  Identities=10%  Similarity=0.117  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHhCChh----hhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          170 AVVNVNAEFFNIIRERSLP----AMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDld----am~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      .++++.++|+++++++|.+    ++.++|++|  +++..|.++ +.|+++|++.+...++..++..+++.. .+...++.
T Consensus         4 ~~~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D--~~~~dP~~~-~~G~~ai~~~~~~~~~~~~~~~f~~~~-~~~~~~~~   79 (121)
T 3dxo_A            4 QHLTIAQTYLAAWNEEDNERRRHLVGQAWAEN--TRYVDPLMQ-GEGQQGIAAMIEAARQKFPGYRFVLAG-TPDGHGNF   79 (121)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHEEEE--EEEECSSCE-EEHHHHHHHHHHHHHHHSTTCEEEEEE-EEEEETTE
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCC--eEEECCCCC-cCCHHHHHHHHHHHHHHCCCcEEEEcc-CcceeCCE
Confidence            5778899999999999985    799999999  555677664 899999999998888766555555541 46677887


Q ss_pred             EEEEEEeeeEeCCCc--eEEEEEEEEe-CCeEEEEEEec
Q 022429          246 AWVTMKTYIDIDTGP--FNMTNVFEFH-NGQWYMVHHHS  281 (297)
Q Consensus       246 Avv~~~e~v~~~~g~--lraT~VfrR~-dG~WrlvhhHa  281 (297)
                      +.....-  ...+|.  +....+++-. +|  ||+.+..
T Consensus        80 ~~~~w~~--~~~~g~~~~~G~d~l~~~~dG--rI~~~~~  114 (121)
T 3dxo_A           80 TRFSWRL--ISPDGDDVAGGTDVVSLNTEG--RIDNVVG  114 (121)
T ss_dssp             EEEEEEE--ECTTSCEEEEEEEEEEECTTS--SEEEEEE
T ss_pred             EEEEEEE--eCCCCCceeeEEEEEEECCCC--CEEEEEE
Confidence            6555432  222333  5667788887 66  4555443

>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}

Probab=97.60  E-value=0.00056  Score=55.45  Aligned_cols=97  Identities=9%  Similarity=0.088  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      .+..++-.+|+.+||++.|.+.|++|.  +.+-| .++.+.|+++++..+..+.+.- +..++|+.+++...|+..+-..
T Consensus         5 ~~iVqrlW~al~AgD~D~l~adyaeDa--V~i~P~sa~vl~GR~~~r~a~~~L~~~l-P~g~~It~lR~i~ggn~VVSev   81 (120)
T 3lyg_A            5 ANIVQRGWEALGAGDFDTLVTDYVEKM--IFIMPGQADVLKGRQAFRSALDNLGEIL-PPGFEITGLRQLEGENEIVSIV   81 (120)
T ss_dssp             HHHHHHHHHHHHHTCHHHHGGGEEEEE--EEECSSTTCEEESHHHHHHHHTTHHHHS-CTTCEEEEEEEEECSSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCHHHHHHhcccCe--EEEccCccceeecHHHHHHHHHHHHhhC-CCCceeeeEEEecCCCEEEEEE
Confidence            456778889999999999999999994  44666 4668999999999776666543 2357899999999999654433


Q ss_pred             EeeeEeCC-CceEEEEEEEEeCCe
Q 022429          251 KTYIDIDT-GPFNMTNVFEFHNGQ  273 (297)
Q Consensus       251 ~e~v~~~~-g~lraT~VfrR~dG~  273 (297)
                      ...-  ++ +..++...|.-++|+
T Consensus        82 e~~~--~~~~~~~~~~lf~f~~g~  103 (120)
T 3lyg_A           82 EWKS--DKMIASQLSVLFKFEGDQ  103 (120)
T ss_dssp             EEEE--TTEEEEEEEEEEEEETTE
T ss_pred             EEcC--CCeeeEEEEEEEEEECCE
Confidence            3221  11 236778888888773

>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B

Probab=97.55  E-value=0.0029  Score=53.26  Aligned_cols=115  Identities=10%  Similarity=-0.080  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC-------------C---CCCCHHHHHHHHHHHhcc----
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG-------------E---LFSGYNSVIQSWQIAFNW----  226 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg-------------~---~l~Gr~aVr~sW~~if~~----  226 (297)
                      ...+|.++..++..++..+|.+...++|++|...  ..|.+             .   ...|++.+++.-..+...    
T Consensus        11 ~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y--~~p~~~~~~~~~~~d~~~~~~~~~~~~~~l~~rv~~l~~~~~~~   88 (172)
T 2b1x_B           11 TVREITEWLYMEAELLDAGKYREWLALVTEDLSY--VVPIRVTREREAVTDVVEGMTHMDDDADSMEMRVLRLETEYAWA   88 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE--EEEEECCCCTTSSCCEEEEEEEEEECHHHHHHHHHHHTSSCCGG
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHhccCCEEE--EEEeecccccccccCCCcccEEEeCCHHHHHHHHHHHhcCcccc
Confidence            5578999999999999999999999999999543  22211             0   113788887754444321    


Q ss_pred             --C-CCceeEEEEeEEEEeC--CEEEEEEEeeeEe--CCC---c---eEEEEEEEEeCCeEEEEEEecCC
Q 022429          227 --E-QGVDFQVQDVRARVLT--DIAWVTMKTYIDI--DTG---P---FNMTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       227 --~-~~~~vei~dl~V~v~g--DvAvv~~~e~v~~--~~g---~---lraT~VfrR~dG~WrlvhhHaSp  283 (297)
                        + ......+..+.|.+.+  |.|.+.+...+..  .++   .   -++...|+|.+|+|||.......
T Consensus        89 ~~p~~~t~H~i~n~~I~~~~~~d~a~~~s~~~~~~~~~~~~~~~~~~G~y~D~l~r~~g~Wri~~R~v~l  158 (172)
T 2b1x_B           89 EDPPSRSRHFVTNVRVATGDSEDEFKVTSNLLLYRTRGDVATYDVLSGERTDVLRRAGDSFLMAKRVVLL  158 (172)
T ss_dssp             GSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEECTTCSCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCeEEEEecCEEEEEecCCCEEEEEEEEEEEEEcCCCCceEEEEEEEEEEEEEcCCEEEEEEEEEEE
Confidence              1 1234567888888866  7888776655432  233   1   26788999999999999987643

>1idp_A Scytalone dehydratase; lyase, melanine biosynthesis; 1.45A {Magnaporthe grisea} SCOP: d.17.4.1 PDB: 2std_A* 1std_A* 3std_A* 6std_A* 4std_A* 5std_A* 7std_A*

Probab=97.46  E-value=0.00047  Score=59.48  Aligned_cols=116  Identities=5%  Similarity=0.003  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC--CCC--CCCCHHHHHHHHHH--HhccC-CCceeEEEEe
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--SGE--LFSGYNSVIQSWQI--AFNWE-QGVDFQVQDV  237 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP--gg~--~l~Gr~aVr~sW~~--if~~~-~~~~vei~dl  237 (297)
                      +.+..+|+++..+|.+++-++|.+.+.+++++|..+  -++  ++.  ...+++++.+.|..  .+... ......+...
T Consensus        13 l~d~~~I~~l~~rY~Ra~DtkDwd~lr~~fapd~~~--Dy~~~~~~~~~~~~~d~~v~~~~~~~~Lg~~~~~tqH~~~~~   90 (172)
T 1idp_A           13 FSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRI--DYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGT   90 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEE--ECHHHHSCEEEEEEHHHHHHHHHSTTTTCCTTEEECCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCHHHHHHHhCCCEEE--EcccccCcccccCCHHHHHHHHhhhhhcCCCCcceEEccCCe
Confidence            447788999999999999999999999999998533  232  121  34568888887764  33322 1234667888


Q ss_pred             EEEEeCC-EEEEEEEeeeEe------CCC-c---------eEEEEEEEEeCCeEEEEEEecCCC
Q 022429          238 RARVLTD-IAWVTMKTYIDI------DTG-P---------FNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       238 ~V~v~gD-vAvv~~~e~v~~------~~g-~---------lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      .+.+.+| .+..  ...+..      ++. .         -.++.-|+|++|+|||.+......
T Consensus        91 ~ie~~~dt~a~g--~~~~~~~~~~y~d~~~~~~~~~ghg~G~Y~~~Y~r~dG~WkIa~~~~~~~  152 (172)
T 1idp_A           91 RWEKVSEDEVIG--YHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLKPDIR  152 (172)
T ss_dssp             EEEEEETTEEEE--EEEEEEEEEEESSTTCCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCCeEEE--EEEEEEcccccccccccceeecccccccceEEEEEECCEEEEEEEEEEEE
Confidence            8886665 4443  222211      211 1         246779999999999998876543

>2gbw_B Biphenyl 2,3-dioxygenase beta subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_B* 2ckf_B

Probab=97.42  E-value=0.0072  Score=51.21  Aligned_cols=115  Identities=5%  Similarity=-0.059  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhh-hhhccCCceeeecCCCCC------------------CCCHHHHHHHHHHHhcc-
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMS-RFWLNADYVKCIHASGEL------------------FSGYNSVIQSWQIAFNW-  226 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~-alWaddd~V~cvhPgg~~------------------l~Gr~aVr~sW~~if~~-  226 (297)
                      ...+|.+...++..++..+|.+... ++|++|...  ..|.+..                  ..|++.+++....+... 
T Consensus        12 ~~~~I~~~l~rya~~lD~~d~d~w~~~lfteD~~y--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~   89 (174)
T 2gbw_B           12 VHYDIEAHYRAEVRMFQTGQYREWLQGMVAEDIHY--WMPIYEQRLTRDRRPDPTPDDAAIYNDDFGELKQRVERLYSGQ   89 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHTEEEEEEE--EEECCCCCCTTCCCCCCCTTSCEEEEECHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHhhccCCEEE--EeeccccccccccccCCCcccceeEcCCHHHHHHHHHHHhcCC
Confidence            4567999999999999999999999 999999533  2332111                  24677777755554432 


Q ss_pred             ----CC--CceeEEEEeEEEE-eCCEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCeEEEEEEecCC
Q 022429          227 ----EQ--GVDFQVQDVRARV-LTDIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       227 ----~~--~~~vei~dl~V~v-~gDvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~WrlvhhHaSp  283 (297)
                          .+  .....+..+.|.. .||.|.+.....+..  .++.     -++...|+|.+|+|||.......
T Consensus        90 ~~~~~p~~rt~H~isN~~i~~~~~~~a~v~s~~~~~~~~~~~~~~~~~G~y~D~l~r~~~~wri~~R~v~l  160 (174)
T 2gbw_B           90 VWMEDPPSKIRYFVSNVEAFEAGNGELDVLSNILVYRNRRQTEVTVHTLGREDKLRRDGNGFKVFRRKLIL  160 (174)
T ss_dssp             CGGGSSCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccccCCCCceEEEecCEEEEEcCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEcCCEEEEEEEEEEE
Confidence                11  2245577777876 678777766544432  2331     26788999999999999987643

>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4

Probab=97.38  E-value=0.0032  Score=52.81  Aligned_cols=115  Identities=10%  Similarity=0.017  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC------CCC-----CCCHHHHHHHHHHHhcc---C-CCc
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS------GEL-----FSGYNSVIQSWQIAFNW---E-QGV  230 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg------g~~-----l~Gr~aVr~sW~~if~~---~-~~~  230 (297)
                      ....+|.++..++..++..+|.+...++|++|...  ..|.      +..     ..|++.+++....+...   + ...
T Consensus        11 ~~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y--~~p~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~p~~rt   88 (163)
T 3eby_A           11 VAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLY--QVIARENVDNGLPAAVMYCDSKGMLADRVVALRKANVFPEHFN   88 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGTGGGEEEEEEE--EEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC----CEE
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHhhcCCEEE--EeeccccCCCCCCcEEEEcCCHHHHHHHHHHhhccCCCCCcce
Confidence            45678999999999999999999999999999533  2221      111     14788887765554431   1 122


Q ss_pred             eeEEEEeEE-EEeCCEEEEEEEeeeEe--CCCc------eEEEEEEEEeCCeEEEEEEecC
Q 022429          231 DFQVQDVRA-RVLTDIAWVTMKTYIDI--DTGP------FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       231 ~vei~dl~V-~v~gDvAvv~~~e~v~~--~~g~------lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ...+..+.| ...||.|.+.....+..  .++.      -++...|+|.+|+|||......
T Consensus        89 ~H~vsn~~i~~~~~d~a~v~s~~~~~~~~~~~~~~~~~~G~y~D~l~r~~~gwri~~R~v~  149 (163)
T 3eby_A           89 RHLIGRAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLSGGTVRLKSRTCI  149 (163)
T ss_dssp             EEEECCCEEEEEETTEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred             eEEEcCEEEEecCCCEEEEEEEEEEEEEcCCCccEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            345667777 56788888876654432  2232      2678899999999999998754

>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*

Probab=97.29  E-value=0.0021  Score=56.16  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeec-CCC-C-CCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE--eC
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH-ASG-E-LFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV--LT  243 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvh-Pgg-~-~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v--~g  243 (297)
                      +..+++.++|++++.+ |.+.+..+|++|....... |.| + .+.|+++|++.+..+++..+.  .++..+++..  .+
T Consensus        41 ~~nr~vV~~yl~~~~~-D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDp  117 (185)
T 3jum_A           41 QHNRKIVEQYMHTRGE-ARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDP  117 (185)
T ss_dssp             HHHHHHHHHHHHCCGG-GGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSST
T ss_pred             HHHHHHHHHHHHHhcc-CHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCC
Confidence            4466677788888776 9999999999996443321 222 2 378999999998887765433  5566666654  57


Q ss_pred             CEEEEEEEeeeEe-CCC-c-----eEEEEEEEEeCCeEEE
Q 022429          244 DIAWVTMKTYIDI-DTG-P-----FNMTNVFEFHNGQWYM  276 (297)
Q Consensus       244 DvAvv~~~e~v~~-~~g-~-----lraT~VfrR~dG~Wrl  276 (297)
                      |++++.+...... .+| +     ..+..||+-+||+-.-
T Consensus       118 d~VvvE~~~~Gtv~~TGkp~~~Y~~~yi~V~rVrDGKIv~  157 (185)
T 3jum_A          118 NWFWVECRGEGAIVFPGYPRGQYRNHFLHSFRFENGLIKE  157 (185)
T ss_dssp             TEEEEEEEEEEEECCTTSCCEEEEEEEEEEEEEETTEEEE
T ss_pred             CEEEEEEEEEEEEcCCCCccceEEEeEEEEEEEECCEEEE
Confidence            7888877755433 233 2     4567788889996443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.08  E-value=0.00021  Score=69.51  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             hcccHHHHHHHhcCC-ChhhHhhhhccChHHHHH
Q 022429          101 EQLVPEITTHALSYL-DYPSLCRLSMTNSLMRKA  133 (297)
Q Consensus       101 ~~LP~Eil~~IlsyL-d~~sL~~~s~vcr~~~~~  133 (297)
                      ..||+|++.+||+|| +.+|+.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            479999999999999 899999999999999998

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=97.05  E-value=0.00066  Score=53.63  Aligned_cols=65  Identities=20%  Similarity=0.358  Sum_probs=40.3

Q ss_pred             cccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccccccCCcCCCCChhHHHHHHHH
Q 022429          102 QLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVNGWKAYYAATRA  170 (297)
Q Consensus       102 ~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~~~~~~~~~WKelY~~t~a  170 (297)
                      -.|-+||.-||...++.+|.++-.-|..+  .-.+|.||++++.++|+...  +....+||++|.....
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~--p~e~esWRelY~rl~~   76 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER--PEEYESWREMYLRLQD   76 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC--CCSSSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC--CCCCCCHHHHHHHHHH
Confidence            36889999999999999999999988844  45789999999999999642  3557799999998543

>3hzp_A NTF2-like protein of unknown function; YP_291699.1, structural genomics, joint center structural genomics, JCSG; HET: MSE 1PE; 1.40A {Prochlorococcus marinus}

Probab=96.85  E-value=0.011  Score=48.64  Aligned_cols=108  Identities=11%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeE----EEEeEEEEe
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQ----VQDVRARVL  242 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~ve----i~dl~V~v~  242 (297)
                      ..++|.++++.|..+=.-++.  +..--.+  +...|.|.|.+++ .+...+.    ...+. +.++    +...++.+.
T Consensus         4 ~~~~i~~l~~~fa~~~~~~~f--~~~n~hd--DflFIrPsGnpIt-kegd~~m----~~Sgd-lv~e~~el~ki~~le~~   73 (131)
T 3hzp_A            4 SKEEILSILEAFASTERMGSF--FLDNATA--DFLFIRPSGNPLD-AKGFENM----WSSGD-LVLESAEITKVHKFELL   73 (131)
T ss_dssp             HHHHHHHHHHHHSSTTTTTTH--HHHHBCT--TCCEECTTSCEEC-HHHHHHH----HTSSS-EEEEEEEEEEEEEEEES
T ss_pred             hHHHHHHHHHHhhCHhhhhhh--hhccCCc--ceEEEcCCCCccc-hhhhHHh----hcCCC-EEEEeecccceeeEEEc
Confidence            356777777777544222221  1112222  3667899998776 4444443    33332 2222    334556667


Q ss_pred             CC-EEEEEEEeee--EeCC----CceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          243 TD-IAWVTMKTYI--DIDT----GPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       243 gD-vAvv~~~e~v--~~~~----g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      +| +|++...-..  .-.|    +..++|.||.|.||+|++.--|-|..
T Consensus        74 ~dt~A~v~~t~~~kfsYkG~pned~~~YtrVwKK~d~~WKi~w~qrs~g  122 (131)
T 3hzp_A           74 GSNAAICVFTLGSKFTYKGTQNDDLPTVTSIFKKIDEKWKVAWMQRSSG  122 (131)
T ss_dssp             SSSEEEEEEEEEEEEEETTEEEEEBCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCceEEEEEEecceEEEcCccCCcceeeehhhhhcCCcEEEEEEEecCC
Confidence            77 4887665443  3233    45799999999999999999998754

>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}

Probab=96.50  E-value=0.0095  Score=50.99  Aligned_cols=105  Identities=10%  Similarity=0.189  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCc---eeeecCCC-CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC--E
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADY---VKCIHASG-ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD--I  245 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~---V~cvhPgg-~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD--v  245 (297)
                      +++.++|++. ..+|.+++..+|++|..   .. ..++. ..+.|+++|++.+..++...+  .+++.++++...+|  +
T Consensus        22 r~vV~~~l~~-~~~D~~~~~~LfAeD~v~~~~e-~~~G~P~~~~Gre~l~~~~~~~~~~~~--~~~~~~~~i~~t~Dpd~   97 (163)
T 3ff0_A           22 RETVVKYMNT-KGQDRLRRHELFVEDGCGGLWT-TDTGSPIVIRGKDKLAEHAVWSLKCFP--DWEWYNIKVFETDDPNH   97 (163)
T ss_dssp             HHHHHHHHTC-CGGGGGGGGGGEEEEEEEEESS-CSSSSCEEEESHHHHHHHHHHHHHHST--TCEEEEEEEEEBSSTTE
T ss_pred             HHHHHHHHHH-hcCCHHHHHHhcCCcccceeeE-ECCCCCcceecHHHHHHHHHHHHhhCC--CceeeeEEEEEcCCCCE
Confidence            4455667743 46899999999999954   32 22332 347899999998877766543  35677777776655  8


Q ss_pred             EEEEEEeeeEe--CCCc---e--EEEEEEEEeCCeEEEEEEe
Q 022429          246 AWVTMKTYIDI--DTGP---F--NMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       246 Avv~~~e~v~~--~~g~---l--raT~VfrR~dG~WrlvhhH  280 (297)
                      .++.+......  .|.+   .  .+..+|+-+||+=.-....
T Consensus        98 vvvE~~~~g~i~~tG~~~~~y~~~yi~v~~vrdGkI~~~ReY  139 (163)
T 3ff0_A           98 FWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREF  139 (163)
T ss_dssp             EEEEEEEEEEECCTTSCCEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEcCCCcccccEEEeEEEEEEEeCCEEEEEEee
Confidence            88777755443  3434   3  5667888889964444333

>1uli_B Biphenyl dioxygenase small subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 1ulj_B* 3en1_B* 3eqq_B

Probab=96.35  E-value=0.14  Score=43.88  Aligned_cols=116  Identities=3%  Similarity=-0.108  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC-------------------CCCHHHHHHHHHHHhcc
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL-------------------FSGYNSVIQSWQIAFNW  226 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~-------------------l~Gr~aVr~sW~~if~~  226 (297)
                      ....+|.+....+.+++..+|.+...++|++|...  ..|.+..                   ..|++.++.....+...
T Consensus        21 ~~~~eI~~~l~r~A~lLD~~d~d~w~~lfteD~~y--~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~Rv~rl~~~   98 (187)
T 1uli_B           21 SLQHEIEQFYYWEAKLLNDRRFQEWFDLLAEDIHY--FMPIRTTRIMRETAQEYSGAREYAHFDDNAQMMRGRLRKITSD   98 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEE--EEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHcccCEEE--EeeccccccccccccccCCccceeeecCCHHHHHHHHHHHhcc
Confidence            35667999999999999999999999999999543  3332211                   13566676655544431


Q ss_pred             -----CC--CceeEEEEeEEEEe--CCEEEEEEEeeeEe--CCCc--e---EEEEEEEEeCC--eEEEEEEecCC
Q 022429          227 -----EQ--GVDFQVQDVRARVL--TDIAWVTMKTYIDI--DTGP--F---NMTNVFEFHNG--QWYMVHHHSSV  283 (297)
Q Consensus       227 -----~~--~~~vei~dl~V~v~--gDvAvv~~~e~v~~--~~g~--l---raT~VfrR~dG--~WrlvhhHaSp  283 (297)
                           .+  .....+..+.|...  ||.+.+.....+..  .++.  +   .....++|.+|  +|||.......
T Consensus        99 ~~~a~~p~~rtrH~isNv~V~~~~~~d~a~vrs~~~~~~~r~~~~~~~~~g~r~D~l~r~~~~~gwri~~R~v~l  173 (187)
T 1uli_B           99 VSWSENPASRTRHVISNVMIVDGEKPGEYHVSSVFIVYRNRLERQLDIFAGERKDILRRTGSEAGFELAKRTILI  173 (187)
T ss_dssp             TCGGGSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECSSTTCEEEEEEEEEE
T ss_pred             cccccCCCCceEEEecCEEEEEeCCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEECCCccceEEEEEEEEE
Confidence                 11  22455778888873  57887776655432  2331  1   22488999999  99999987643

>1wql_B Ethylbenzene dioxygenase small subunit; biphenyl dioxygenase, cumene dioxygenase; 2.20A {Pseudomonas fluorescens} SCOP: d.17.4.4

Probab=96.05  E-value=0.28  Score=41.93  Aligned_cols=116  Identities=8%  Similarity=-0.076  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC-------------C------CCCHHHHHHHHHHHhcc
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-------------L------FSGYNSVIQSWQIAFNW  226 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~-------------~------l~Gr~aVr~sW~~if~~  226 (297)
                      ....+|.+....+.+++..+|.+...++|++|....  .|...             .      ..|++.++..-..+...
T Consensus        20 ~~~~eI~~~l~r~A~lLD~~d~~~w~~lfteD~~y~--~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~Rv~rl~~~   97 (186)
T 1wql_B           20 ELQNAVEQFYYREAQLLDYQNYEAWLALLTQDIQYW--MPIRTTHTSRNKAMEYVPPGGNAHFDETYESMRARIRARVSG   97 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHTTBCTTCCEE--EECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHcCcCHHHHHHHhhCCEEEE--eeccccccccccccccCCccceEEEeCCHHHHHHHHHHHhcC
Confidence            356779999999999999999999999999996542  23210             1      13455655544433321


Q ss_pred             -----CC--CceeEEEEeEEEEe--CCEEEEEEEeeeEe--CCCc--e---EEEEEEEEeCC--eEEEEEEecCC
Q 022429          227 -----EQ--GVDFQVQDVRARVL--TDIAWVTMKTYIDI--DTGP--F---NMTNVFEFHNG--QWYMVHHHSSV  283 (297)
Q Consensus       227 -----~~--~~~vei~dl~V~v~--gDvAvv~~~e~v~~--~~g~--l---raT~VfrR~dG--~WrlvhhHaSp  283 (297)
                           .+  .....+..+.|...  ||.+.+.....+..  .++.  +   .....++|.+|  +|||.......
T Consensus        98 ~~~a~~p~~rtrH~isNv~v~~~~~~d~~~v~s~~~~~~~r~~~~~~~~~g~r~D~l~r~~~~~~wri~~R~v~l  172 (186)
T 1wql_B           98 LNWTEDPPSRSRHIVSNVIVRETESAGTLEVSSAFLCYRNRLERMTDIYVGERRDILLRVSDGLGFKIAKRTILL  172 (186)
T ss_dssp             CCGGGSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECSSTTSEEEEEEEEEE
T ss_pred             cccccCCCCceEEEecCEEEEEecCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEECCCccceEEEEEEEEE
Confidence                 11  22455778888876  67887776655432  2331  1   22488999999  99999987643

>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*

Probab=95.96  E-value=0.023  Score=53.18  Aligned_cols=113  Identities=10%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE---eCCEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV---LTDIAWV  248 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v---~gDvAvv  248 (297)
                      .....+|+++++++|++++.+++++|..+  -.|-++++.|+++|..-++.-..+   +.+..+.--...   +++-+-+
T Consensus       195 ~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~L--epPf~~PIvGreAI~~y~~~eaq~---~~l~P~~g~~ep~e~g~~qi~v  269 (323)
T 3mg1_A          195 NATVLNYMDNLNANDFDTLIELFTSDGAL--QPPFQRPIVGKENVLRFFREECQN---LKLIPERGVTEPAEDGFTQIKV  269 (323)
T ss_dssp             CHHHHHHHHHHHTTCHHHHHTTEEEEEEE--ECTTSCCEESHHHHHHHHHHHCTT---CEEEEEEEEEEECGGGCEEEEE
T ss_pred             hHHHHHHHHHhcccCHHHHHHHccCCCee--CCCCCCCccCHHHHHHHHHHHhcc---CEEeeccCccccccCCCceEEE
Confidence            34678899999999999999999999655  677789999999999976644433   455554422222   3345556


Q ss_pred             EEEeeeEeCCC--ceEEEEEEEEe-CCeEEEEEEecCCCCCCCccc
Q 022429          249 TMKTYIDIDTG--PFNMTNVFEFH-NGQWYMVHHHSSVMLVDGEVE  291 (297)
Q Consensus       249 ~~~e~v~~~~g--~lraT~VfrR~-dG~WrlvhhHaSp~~~~~~~~  291 (297)
                      +|+-+..--|.  .++++..|+.. +|+=.-|+  -.....++++-
T Consensus       270 tGkVqTpwfGv~v~mnVaW~F~lN~~gkI~~v~--i~LLAS~~ELl  313 (323)
T 3mg1_A          270 TGKVQTPWFGGNVGMNIAWRFLLNPEGKIFFVA--IDLLASPKELL  313 (323)
T ss_dssp             EEEEECTTTGGGCCEEEEEEEEECTTSCEEEEE--EEEBSSTTC--
T ss_pred             EEEEEcccCCccccccceeEEEECCCCcEEEEE--ehhhcCHHHHH
Confidence            66654321122  36888888884 56544433  33333444443

>3e99_A Benzoate 1,2-dioxygenase beta subunit; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Burkholderia mallei atcc 23344} SCOP: d.17.4.4

Probab=95.66  E-value=0.33  Score=40.88  Aligned_cols=115  Identities=6%  Similarity=-0.062  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC--------C--------CCCHHHHHHHHHHHh------
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE--------L--------FSGYNSVIQSWQIAF------  224 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~--------~--------l~Gr~aVr~sW~~if------  224 (297)
                      ...+|.+....+..++..+|.+....+|++|..  +..|..+        +        ..++..++..-..+.      
T Consensus         6 ~~~~i~~~l~~~a~~lD~~~~~~w~~lf~~D~~--Y~~p~~~~~~~~~~d~~~~~~~i~~~~~~~L~~RV~rl~~~~~~~   83 (164)
T 3e99_A            6 DLADIQAFLYRESRLLDDKAWDAWLDCYRADAV--FWMPSWDDADALVTDPQREISLIYYPNRQGLEDRVFRIKTERSSA   83 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEE--EEEECCCC-----------CEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHHHhcCCCEE--EEEeccccccccccCCCCcceEEEcCCHHHHHHHHHHHhCccccc
Confidence            346788999999999999999999999999953  3333321        1        245555544322221      


Q ss_pred             ccCC-CceeEEEEeEEE-EeCCEEEEEEEeeeEe--CCC-c---eEEEEEEEEeCCeEEEEEEecCC
Q 022429          225 NWEQ-GVDFQVQDVRAR-VLTDIAWVTMKTYIDI--DTG-P---FNMTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       225 ~~~~-~~~vei~dl~V~-v~gDvAvv~~~e~v~~--~~g-~---lraT~VfrR~dG~WrlvhhHaSp  283 (297)
                      ..++ .....+..+.|. ..++.+-+.+...+..  .++ .   -+.+.+++|.+|+|||....-..
T Consensus        84 ~~p~~rtrH~vsnv~v~~~~~~~~~v~s~~~v~~~r~~~~~~~~G~~~d~L~r~~~~wri~~R~v~l  150 (164)
T 3e99_A           84 TVPDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAIDFSGDAPKIVSKYVVL  150 (164)
T ss_dssp             CSSCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             cCCCceEEEEEeCEEEEEeCCCEEEEEEEEEEEEECCCCeEEEEEEEEEEEEEECCEEEEEEEEEEE
Confidence            1221 224557777775 4577777766655432  222 1   26788999999999999987654

>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}

Probab=95.53  E-value=0.24  Score=40.71  Aligned_cols=92  Identities=9%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMK  251 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~  251 (297)
                      .++....|.||..||++-+.+-|.++     ..|..    .++.+. .|..-..|.   .++  .++...+++-++|.-.
T Consensus        29 E~LMRSRYsAyv~~~~dYL~~T~hP~-----~r~~~----~~~~~~-~~~~~~~W~---gL~--I~~~~~g~~~g~VeF~   93 (128)
T 2jq5_A           29 EALMRSRYAAYALKDFDYIVETTDPE-----RRDLF----DHDVNR-AWMEESDFL---ELR--VLGSSEKGSRGTVEFI   93 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTBCHH-----HHTTC----CHHHHH-HHHHHEEEE---EEE--EEEEEEETTEEEEEEE
T ss_pred             HHHHhhhceeeecCCcchhhhhcCcc-----cCCcc----chHHHH-hhCcCCeee---eeE--EEEEecCCCCEEEEEE
Confidence            56788999999999999999999666     12321    234444 343323332   233  3333343433888888


Q ss_pred             eeeEeCCCc---eEEEEEEEEeCCeEEEEE
Q 022429          252 TYIDIDTGP---FNMTNVFEFHNGQWYMVH  278 (297)
Q Consensus       252 e~v~~~~g~---lraT~VfrR~dG~Wrlvh  278 (297)
                      .+...+|..   ++=..-|+|++|+|+.+-
T Consensus        94 A~y~~~g~~~~~~hE~SrF~r~~g~W~YvD  123 (128)
T 2jq5_A           94 ARFRRGGGPEQSHHERSQFRKARGRWYFSE  123 (128)
T ss_dssp             EEEEESSSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCceeEEEEeeeEEEECCEEEEeC
Confidence            777654433   566889999999999874

>3gzx_B Biphenyl dioxygenase subunit beta; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} SCOP: d.17.4.4 PDB: 3gzy_B* 2yfi_B 2xr8_B* 2xrx_B* 2xsh_B 2xso_B 2yfj_B* 2yfl_B*

Probab=94.62  E-value=1.4  Score=37.84  Aligned_cols=114  Identities=8%  Similarity=-0.010  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC-------------------CCCHHHHHHHHHHHhc--
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL-------------------FSGYNSVIQSWQIAFN--  225 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~-------------------l~Gr~aVr~sW~~if~--  225 (297)
                      ...+|.+....+..++..+|.+.-..+|++|..  +..|..+.                   ..|+..++..-..+..  
T Consensus        21 ~~~~i~~~l~~~a~llD~~~~~~w~~lft~D~~--Y~~p~~~~~~~~d~~~~~~~~~~~~~~~d~r~~L~~RV~rl~t~~   98 (186)
T 3gzx_B           21 LQHQVEQFYYREAQLLDHHAFQAWFALLAEDIH--YWMPIRTVRTAREQGLEYVPAGANAHFDDTHATMYGRIRQKTSDL   98 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEE--EEEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHhCCCCEE--EEEecCCCccccccccccCccccceeeeCCHHHHHHHHHHHhccc
Confidence            456688888899999999999999999999953  33332211                   1356666665444432  


Q ss_pred             -c---CC-CceeEEEEeEEEEe--CCEEEEEEEeeeEe--CCCc-----eEEEEEEEE-eCC-eEEEEEEecC
Q 022429          226 -W---EQ-GVDFQVQDVRARVL--TDIAWVTMKTYIDI--DTGP-----FNMTNVFEF-HNG-QWYMVHHHSS  282 (297)
Q Consensus       226 -~---~~-~~~vei~dl~V~v~--gDvAvv~~~e~v~~--~~g~-----lraT~VfrR-~dG-~WrlvhhHaS  282 (297)
                       +   ++ .....+..+.|...  ||.+-+.....+..  .++.     -+++.+++| .+| +|||....-.
T Consensus        99 ~~a~~P~~RtrH~vsNv~v~~~~~~~~~~vrs~~~v~~~r~~~~~~~~~G~y~D~L~r~~~g~~wrI~~R~V~  171 (186)
T 3gzx_B           99 NWAEDPPSRTRHLVSNVIVREMDTPGTLEVASAFLLYRSRLERQVDVFAGERRDVLRIADNPLGFQIAKRTII  171 (186)
T ss_dssp             CGGGSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECSSTTSEEEEEEEEE
T ss_pred             ccccCCCceEEEEEcCEEEEEecCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEEcCCCceEEEEEEEEE
Confidence             1   22 22455778888765  67777776655532  2232     267889999 888 9999988754

>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}

Probab=94.61  E-value=1.2  Score=35.42  Aligned_cols=99  Identities=15%  Similarity=0.250  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC---EEEEEE
Q 022429          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD---IAWVTM  250 (297)
Q Consensus       174 a~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD---vAvv~~  250 (297)
                      -.+.||..|.. +.+.|.++|.++  ..+++..+..+.|.++|.+-|...-  .....+++..++.....+   +..|+|
T Consensus        10 Fv~~YY~~ld~-~r~~L~~~Y~~~--s~~~~~~~~~~~G~~~I~~~l~~Lp--f~~~~~~I~t~D~Qp~~~~gili~V~G   84 (120)
T 3ujm_A           10 FVRQYYTLLNK-APNHLHRFYNHN--SSYIHGESKLVVGQREIHNRIQQLN--FNDCHAKISQVDAQATLGNGVVVQVTG   84 (120)
T ss_dssp             HHHHHHHHHHH-CGGGGGGGEEEE--EEEEETTCCCEESHHHHHHHHHHHC--CCSCEEEEEEEEEEEEGGGEEEEEEEE
T ss_pred             HHHHHHHHHhc-CHHHHhhheccc--ceEEEcCCcEecCHHHHHHHHHcCC--CcceEEEEecccceEcCCCCEEEEEEE
Confidence            44678889985 899999999988  3456766778999999999887542  123356777777776533   233344


Q ss_pred             EeeeEeCCC-ceEEEEEEEE--eC-CeEEEEEE
Q 022429          251 KTYIDIDTG-PFNMTNVFEF--HN-GQWYMVHH  279 (297)
Q Consensus       251 ~e~v~~~~g-~lraT~VfrR--~d-G~Wrlvhh  279 (297)
                      .-.  .++. ..+.++.|..  .+ |+|.+...
T Consensus        85 ~l~--~~~~~~r~F~QtF~L~p~~~~~y~V~nD  115 (120)
T 3ujm_A           85 ELS--NDGQPMRRFTQTFVLAAQSPKKYYVHND  115 (120)
T ss_dssp             EEE--STTCCCEEEEEEEEEEECSTTCEEEEEE
T ss_pred             EEE--eCCCCCceEEEEEEEEEcCCCCEEEEEE
Confidence            433  2343 3466776665  33 78998764

>2bmo_B Oxygenase-beta NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: d.17.4.4 PDB: 2bmq_B 2bmr_B* 1o7n_B 1ndo_B 1o7g_B* 1o7h_B 1o7m_B 1eg9_B 1o7p_B* 1o7w_B 1uuv_B 1uuw_B 2hmj_B 2hmk_B* 2hml_B* 2hmm_B* 2hmn_B* 2hmo_B*

Probab=94.44  E-value=0.95  Score=39.13  Aligned_cols=115  Identities=12%  Similarity=0.074  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhh-hhccCCceeeecCCCCC-------C----------CCHHHHHHHHHHHhcc--
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSR-FWLNADYVKCIHASGEL-------F----------SGYNSVIQSWQIAFNW--  226 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~a-lWaddd~V~cvhPgg~~-------l----------~Gr~aVr~sW~~if~~--  226 (297)
                      ...+|.+....+..++..++.+...+ +|++|...  ..|.++.       .          .++..++..-..+...  
T Consensus        30 ~~~eI~~fl~reA~lLD~~~~d~W~~~lfteD~~y--~~p~~~~~~~~d~~~~~~~~~~~~~d~~~~L~~RV~rl~~~~~  107 (194)
T 2bmo_B           30 LQQEVTTLLTREAHLLDIQAYKAWLEHFVAPEIKY--QVISRELRSTSERRYQLNDAVNLYNENYQQLKVRVEHQMDPQN  107 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHTEEEEEEE--EEEEECCCCSSCCCCCSCCEEEEEEECHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHhhcCCCEEE--EEecccccccccccccccccceeeeCCHHHHHHHHHHHhcccc
Confidence            34568888888889999999999999 99999543  2221111       0          1345555443333321  


Q ss_pred             ---CC--CceeEEEEe-EEEEeC--CEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCe-EEEEEEecCC
Q 022429          227 ---EQ--GVDFQVQDV-RARVLT--DIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQ-WYMVHHHSSV  283 (297)
Q Consensus       227 ---~~--~~~vei~dl-~V~v~g--DvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~-WrlvhhHaSp  283 (297)
                         .+  ....-+..+ .|...+  |.+-+.....+..  .++.     -++..+++|.+|+ |||....-..
T Consensus       108 ~a~~p~~rtrH~vsNv~~V~~~~~~d~~~vrs~~~v~~~r~~~~~~~~~G~y~D~l~r~~~g~wri~~R~v~l  180 (194)
T 2bmo_B          108 WANNPKIRFTRFVTNVTAAKDKSAPEILHVRSNLILHRARRENQVDVFYATREDKWKRIEGGGIKLVERFVDY  180 (194)
T ss_dssp             GGGSSCCEEEEEEEEEEEEECSSCTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECTTSCEEEEEEEEEC
T ss_pred             cccCCCCceEEEecCEEEEEEcCCCCEEEEEEEEEEEEecCCCceEEEEEEEEEEEEECCCCCEEEEEEEEEE
Confidence               11  223457777 777655  6777766554432  2221     2668899999998 9999988654

>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1

Probab=92.60  E-value=0.68  Score=40.27  Aligned_cols=93  Identities=14%  Similarity=0.248  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE--EeCCEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR--VLTDIAWV  248 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~--v~gDvAvv  248 (297)
                      -+++...+|.||..+|++-+.+-|.++-     .|.    ..+++|. .|..-..|.   .++  .+...  ..++.++|
T Consensus        53 aE~LMRSRYSAfvl~~~dYL~~T~hP~~-----r~~----~~~~~i~-~~~~~~~Wl---gLe--Il~~~~G~~~~~g~V  117 (184)
T 2i9w_A           53 AEHLMRTRYSAFVLVKPEYIVKTTLPAQ-----QDL----LDIKAIE-NWAKETDWA---GLE--VVAHTPKLSKRHAQV  117 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHTBCHHH-----HTT----CCHHHHH-HHHHHSEEE---EEE--EEEEETTSSSSEEEE
T ss_pred             HHHHHHHhHHHHHcccHHHHHHhcCccc-----Ccc----ccHHHHH-hhccCCeee---ceE--EEEeecCCCCCccEE
Confidence            3567889999999999999999996661     232    2244554 454333442   233  33333  24568999


Q ss_pred             EEEeeeEeCCC--ceEEEEEEEEeCC------eEEEEE
Q 022429          249 TMKTYIDIDTG--PFNMTNVFEFHNG------QWYMVH  278 (297)
Q Consensus       249 ~~~e~v~~~~g--~lraT~VfrR~dG------~Wrlvh  278 (297)
                      .-..+...++.  .++=..-|+|++|      +|..+-
T Consensus       118 eF~A~y~~~g~~~~lhErSrFvr~~G~~~~~~rW~YvD  155 (184)
T 2i9w_A          118 EFKAYFKTPDGLQAHHELSTFVKIKNKANSDASWYFLD  155 (184)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEECSSSSCEEEEECC
T ss_pred             EEEEEEecCCCccceehhccceecCCccccccceeecc
Confidence            88888765442  3667889999999      999863

>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A

Probab=90.72  E-value=5  Score=32.07  Aligned_cols=100  Identities=12%  Similarity=0.287  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC---EEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD---IAWV  248 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD---vAvv  248 (297)
                      .+-.+.||..|.. +.+.|.++|.++.  ...++ |....|.++|.+.|... .. ....+++..++.....+   +..|
T Consensus        12 ~~Fv~~YY~~~d~-~r~~L~~~Y~~~S--~ls~~-g~~~~G~~~I~~~l~~L-p~-~~~~h~i~t~d~qp~~~~~ili~V   85 (127)
T 1gy6_A           12 SSFIQHYYQLFDN-DRTQLGAIYIDAS--CLTWE-GQQFQGKAAIVEKLSSL-PF-QKIQHSITAQDHQPTPDSCIISMV   85 (127)
T ss_dssp             HHHHHHHHHHHHH-HGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHC-SC-SCEEEEEEEEEEEECTTSCEEEEE
T ss_pred             HHHHHHHHHHHhC-CHHHHHHhhCCCc--EEEEC-CccccCHHHHHHHHHhC-CC-cceEEEEEEEEEEEeCCCcEEEEE
Confidence            4456788999988 7999999999884  33454 56889999999987653 11 12467777777776533   3334


Q ss_pred             EEEeeeEeCCC-ceEEEEEE--EEeCCeEEEEEE
Q 022429          249 TMKTYIDIDTG-PFNMTNVF--EFHNGQWYMVHH  279 (297)
Q Consensus       249 ~~~e~v~~~~g-~lraT~Vf--rR~dG~Wrlvhh  279 (297)
                      +|.-..  +++ ....++.|  ...+|+|.+...
T Consensus        86 ~G~~~~--~~~~~~~F~qtF~L~p~~~~~~I~nD  117 (127)
T 1gy6_A           86 VGQLKA--DEDPIMGFHQMFLLKNINDAWVCTND  117 (127)
T ss_dssp             EEEEEE--TTSCCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEE--CCCCcceEeEEEEEEEeCCEEEEEEE
Confidence            444332  333 34455554  446789998764

>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A

Probab=90.04  E-value=6.7  Score=31.81  Aligned_cols=101  Identities=14%  Similarity=0.293  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-----
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-----  243 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-----  243 (297)
                      ..-.+-.+.||..|.. |-+.|..+|.++.  ...+. |....|.++|.+.|...    +..++++..++.....     
T Consensus        15 ~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S--~ls~~-g~~~~G~~~I~~~l~~L----p~~~h~i~s~d~q~~~~~~~~   86 (140)
T 1jkg_A           15 RAAEEFVNVYYTTMDK-RRRLLSRLYMGTA--TLVWN-GNAVSGQESLSEFFEML----PSSEFQISVVDCQPVHDEATP   86 (140)
T ss_dssp             HHHHHHHHHHHHHHHH-CGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHS----CCEEEEEEEEEEEECCTTTST
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHhcCCCc--EEEEC-CeeecCHHHHHHHHHhC----CCceeEEEEEEEEEcCCcccC
Confidence            3345556788999988 8999999999885  33454 56789999999987633    2224677777777652     


Q ss_pred             --CE--EEEEEEeeeEeCCC-ceEEEEEEEEe------CCeEEEEEE
Q 022429          244 --DI--AWVTMKTYIDIDTG-PFNMTNVFEFH------NGQWYMVHH  279 (297)
Q Consensus       244 --Dv--Avv~~~e~v~~~~g-~lraT~VfrR~------dG~Wrlvhh  279 (297)
                        +.  ..|+|.-.  .++. ....+++|.-.      +|+|++...
T Consensus        87 ~~~~ilI~V~G~~~--~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD  131 (140)
T 1jkg_A           87 SQTTVLVVICGSVK--FEGNKQRDFNQNFILTAQASPSNTVWKIASD  131 (140)
T ss_dssp             TCCEEEEEEEEEEE--ETTSCCEEEEEEEEEEEECCSSSCEEEEEEE
T ss_pred             CCCeEEEEEEEEEE--ECCCCceeeeEEEEEEecCCCCCCeEEEEee
Confidence              22  33344433  3333 34566666553      288998764

>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2

Probab=89.81  E-value=6.6  Score=31.45  Aligned_cols=101  Identities=18%  Similarity=0.368  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe--CC-EEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL--TD-IAWV  248 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~--gD-vAvv  248 (297)
                      .+-.+.||..|.. |.+.|.++|.++.  ...++ |....|.++|.+.|...-.  ....+++..++....  |. +..|
T Consensus        16 ~~Fv~~YY~~~d~-~r~~L~~~Y~~~S--~ls~~-g~~~~G~~~I~~~l~~Lp~--~~~~h~i~t~D~qp~~~~gilI~V   89 (129)
T 1zo2_A           16 KQFVQHYYQTFQT-NRPALGGLYGPQS--MLTWE-DTQFQGQANIVNKFNSLNF--QRVQFEITRVDCQPSPNNGSIVFV   89 (129)
T ss_dssp             HHHHHHHHHHHHH-CGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHHCC--SCEEEEEEEEEEEECTBSSEEEEE
T ss_pred             HHHHHHHHHHHhC-CHHHHHHhhCCCc--EEEEC-CceeccHHHHHHHHHhCCC--cceEEEEEEEEEEEeCCCcEEEEE
Confidence            3456788999988 8999999999884  33454 5678999999998765421  124567777777765  33 3344


Q ss_pred             EEEeeeEeCCCceEEEEEEEE--eC-CeEEEEEE
Q 022429          249 TMKTYIDIDTGPFNMTNVFEF--HN-GQWYMVHH  279 (297)
Q Consensus       249 ~~~e~v~~~~g~lraT~VfrR--~d-G~Wrlvhh  279 (297)
                      +|.-... ++.....++.|.-  .+ |+|.+...
T Consensus        90 ~G~~~~~-~~~~~~F~qtF~L~p~~~~~y~I~nD  122 (129)
T 1zo2_A           90 TGDVRID-DGQPLKFSQVFNLMPSGNGGFMIFND  122 (129)
T ss_dssp             EEEEEET-TCCCEEEEEEEEEEECSSSCEEEEEE
T ss_pred             EEEEEEC-CCCcceEEEEEEEEEcCCCcEEEEeE
Confidence            4543332 2234555665544  45 78998764

>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}

Probab=89.50  E-value=8.3  Score=32.13  Aligned_cols=98  Identities=11%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-------C
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-------D  244 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-------D  244 (297)
                      .+-.+.||..|.. |.+.|.++|.++..+  ... |..+.|.++|.+.|...    +...+++..+++....       +
T Consensus        38 ~~FV~qYY~~~d~-~R~~L~~fY~d~S~l--s~~-g~~~~G~~~I~~~l~~L----p~~~h~I~s~D~qp~~~~~~~q~~  109 (154)
T 3nv0_B           38 KKFMDVYYDVMDR-KREKIGFLYTQVSNA--VWN-GNPINGYDSICEFMKAL----PSTQHDIQSLDAQRLPEGVTGDMS  109 (154)
T ss_dssp             HHHHHHHHHHHHH-CGGGGGGGEEEEEEE--EET-TEEEESHHHHHHHHHHS----CCEEEEEEEEEEEECCTTCCGGGT
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHhcCCcEE--EEC-CeecccHHHHHHHHHhC----CCeEEEEEEEEEEEcCccccCCCC
Confidence            4445678999987 899999999987433  443 56789999999987644    2346777777777654       2


Q ss_pred             ---EEEEEEEeeeEeCCC-ceEEEEEEE--EeCCeEEEEEE
Q 022429          245 ---IAWVTMKTYIDIDTG-PFNMTNVFE--FHNGQWYMVHH  279 (297)
Q Consensus       245 ---vAvv~~~e~v~~~~g-~lraT~Vfr--R~dG~Wrlvhh  279 (297)
                         +..|+|.-..  ++. ....+++|.  ..+|+|+++..
T Consensus       110 ~~ilI~V~G~l~~--~~~~~r~F~QtFvL~p~~~~y~V~ND  148 (154)
T 3nv0_B          110 GGMLLNVAGAVTV--DGDSKRAFTQTLLLGVEDGKYKVKSD  148 (154)
T ss_dssp             TCEEEEEEEEEEE--TTSCCEEEEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEEEEEEEE--CCCCceeEEEEEEEEEeCCEEEEEee
Confidence               2334454433  343 355666665  46789998764

>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A

Probab=88.89  E-value=7.6  Score=30.88  Aligned_cols=101  Identities=15%  Similarity=0.264  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe---CC-EEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL---TD-IAW  247 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~---gD-vAv  247 (297)
                      .+-.+.||..|.. |.+.|..+|.++.  ...++ |....|.++|.+.|...-  ....++++..++....   |. +..
T Consensus        10 ~~Fv~~YY~~~d~-~r~~L~~~Y~~~S--~~s~~-g~~~~G~~~I~~~l~~Lp--~~~~~h~i~t~D~qp~~~~~gili~   83 (125)
T 1gy7_A           10 QNFTQFYYNQFDT-DRSQLGNLYRNES--MLTFE-TSQLQGAKDIVEKLVSLP--FQKVQHRITTLDAQPASPYGDVLVM   83 (125)
T ss_dssp             HHHHHHHHHHHHH-HGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHSC--CSCEEEEEEEEEEEESSTTSCEEEE
T ss_pred             HHHHHHHHHHHcC-CHHHHHHhhCCCc--EEEEC-CcEecCHHHHHHHHHhCC--CcceEEEEEEEEEEEecCCCeEEEE
Confidence            3445788888888 7999999999873  33454 568899999999875431  1134677777777765   22 344


Q ss_pred             EEEEeeeEeCC-CceEEEEEE--EEeCCeEEEEEE
Q 022429          248 VTMKTYIDIDT-GPFNMTNVF--EFHNGQWYMVHH  279 (297)
Q Consensus       248 v~~~e~v~~~~-g~lraT~Vf--rR~dG~Wrlvhh  279 (297)
                      |+|.-... ++ .....++.|  ...+++|.+...
T Consensus        84 V~G~~~~~-~~~~~~~F~qtF~L~p~~~~~~I~nD  117 (125)
T 1gy7_A           84 ITGDLLID-EEQNPQRFSQVFHLIPDGNSYYVFND  117 (125)
T ss_dssp             EEEEEEET-TCSSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEC-CCCCCccEeEEEEEEEeCCEEEEEEE
Confidence            45554332 22 334555555  446789998764

>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A

Probab=85.47  E-value=12  Score=33.46  Aligned_cols=106  Identities=11%  Similarity=-0.012  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-C-----------------------------CCCCCHHHHHHHH
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-G-----------------------------ELFSGYNSVIQSW  220 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g-----------------------------~~l~Gr~aVr~sW  220 (297)
                      +.+-.+.||..|..+|-..|..+|.++.-.+.-.++ +                             ....|+++|.+.|
T Consensus        18 ~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I~~~l   97 (250)
T 1jkg_B           18 VLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFL   97 (250)
T ss_dssp             HHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHH
Confidence            455667899999998899999999988544333222 1                             2568999999987


Q ss_pred             HHHhccCCCceeEEE--EeEEEEeCC-E--EEEEEEeeeEeC---CCceEEEEEEEE---eCCeEEEEEEe
Q 022429          221 QIAFNWEQGVDFQVQ--DVRARVLTD-I--AWVTMKTYIDID---TGPFNMTNVFEF---HNGQWYMVHHH  280 (297)
Q Consensus       221 ~~if~~~~~~~vei~--dl~V~v~gD-v--Avv~~~e~v~~~---~g~lraT~VfrR---~dG~WrlvhhH  280 (297)
                      ...-    ..++.+.  .+++...++ .  -.|+|.-.....   +.....+..|.-   .+|+|+|+..+
T Consensus        98 ~~LP----~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~  164 (250)
T 1jkg_B           98 NELP----KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDE  164 (250)
T ss_dssp             TTSC----CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEE
T ss_pred             HhCC----CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeE
Confidence            5332    2222222  333444333 2  344555333210   123445555554   26789998765

>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A

Probab=84.70  E-value=15  Score=30.11  Aligned_cols=107  Identities=6%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecC--C----------CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA--S----------GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRA  239 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhP--g----------g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V  239 (297)
                      .+-.+.||..|.. |.+.|.++|.++...+....  .          +....|.++|.+.|..........++++..++.
T Consensus        16 ~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h~I~s~D~   94 (154)
T 2qiy_A           16 FAFLQNYYERMRT-DPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDF   94 (154)
T ss_dssp             HHHHHHHHHHHHH-CGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhC-CHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEEEEEEEEE
Confidence            4456789999998 89999999997754332210  0          557789999999887652111124566777777


Q ss_pred             EEe-C--C--EEEEEEEeeeEeCCCceEEEEEEEE--eC--CeEEEEEEe
Q 022429          240 RVL-T--D--IAWVTMKTYIDIDTGPFNMTNVFEF--HN--GQWYMVHHH  280 (297)
Q Consensus       240 ~v~-g--D--vAvv~~~e~v~~~~g~lraT~VfrR--~d--G~WrlvhhH  280 (297)
                      ... +  +  +..|+|.-... ++.....++.|.-  .+  |+|.++..-
T Consensus        95 q~~~~~~~~ilI~V~G~~~~~-~~~~r~F~qtFvL~p~~~~~~y~I~ND~  143 (154)
T 2qiy_A           95 QYTGHLHKSILIMATGEMFWT-GTPVYKFCQTFILLPSSNGSTFDITNDI  143 (154)
T ss_dssp             EEESGGGCEEEEEEEEEEEET-TCCCEEEEEEEEEEECC---CEEEEEEE
T ss_pred             EEccCCCCEEEEEEEEEEEEC-CCCCceEEEEEEEEEeCCCCcEEEEEEE
Confidence            764 2  2  23344443321 2234556666655  33  589987653

>3k7c_A Putative NTF2-like transpeptidase; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: PGE; 2.00A {Campylobacter jejuni}

Probab=84.04  E-value=15  Score=29.41  Aligned_cols=95  Identities=9%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHH-------HHhccCCCc-eeEEEEeEEEEeC
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQ-------IAFNWEQGV-DFQVQDVRARVLT  243 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~-------~if~~~~~~-~vei~dl~V~v~g  243 (297)
                      ..+-.+||+++-.||.+...++-.       +.+.. .-...+.+..-..       ...+...++ .+++..  ..+.+
T Consensus        10 ~~~ak~F~~~l~~GD~e~av~~i~-------~p~~~-~~~~~e~~~gki~m~~~~~~~~~ekkGGi~~I~~~~--~~~d~   79 (114)
T 3k7c_A           10 EDLAKNFTKDLYSGDTKSVMSYID-------LSEAK-SDEEKTFVSDKITQVVAENAAKAKRMGGVKDIQIEE--KTINK   79 (114)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTBC-------CSSCC-SHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE--EEECS
T ss_pred             HHHHHHHHHHHHcCCHHHHHhhcc-------CCccc-chhHHHHHHHHHHHHHHHHHHHHHHcCCcceEEEEE--eeccC
Confidence            345578999999999998887632       22211 0001111222111       111222343 344444  44588


Q ss_pred             CEEEEEEEeeeEeCCCceEEEEEEEEeCCeEEEE
Q 022429          244 DIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMV  277 (297)
Q Consensus       244 DvAvv~~~e~v~~~~g~lraT~VfrR~dG~Wrlv  277 (297)
                      +.|.+...-+.. +|..-.-+.=+.++||.|++.
T Consensus        80 ~~A~V~v~v~~k-nG~t~~~~i~LiK~dG~WkV~  112 (114)
T 3k7c_A           80 DSAKIRVLVLFN-NDNNQSSNVFLAKKDRKWLVL  112 (114)
T ss_dssp             SEEEEEEEEEET-TSCEEEEEEEEEESSSSEEEC
T ss_pred             CEEEEEEEEEEC-CCCccccceeeEEeCCeEEEE
Confidence            899998887654 444445667788999999984

>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0

Probab=82.71  E-value=13  Score=30.03  Aligned_cols=101  Identities=10%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhCChhhhhhhhccCCceeeecCC----C---CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-
Q 022429          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS----G---ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-  244 (297)
Q Consensus       173 aa~~aFy~A~~agDldam~alWaddd~V~cvhPg----g---~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-  244 (297)
                      +-.+.||..|.. +.+.|.++|.++.  ...+.+    |   ....|.++|.+-|...--  ....+++..++.....+ 
T Consensus        15 ~Fv~~YY~~ld~-~r~~L~~~Y~~~S--~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~--~~~~~~I~tvD~Qps~~~   89 (140)
T 3q90_A           15 EFVRQYYTLLNQ-APDMLHRFYGKNS--SYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF--TNCHTKIRHVDAHATLND   89 (140)
T ss_dssp             HHHHHHHHHHHH-CGGGGGGGEEEEE--EEC----------CCCEEHHHHHHHHHHHTCC--CSCEEEEEEEEEEECGGG
T ss_pred             HHHHHHHHHHhc-CHHHHHhhcccCc--eEEEEccCCCCceeecccCHHHHHHHHHhCCC--ccceEEEEeEEEEEeCCC
Confidence            345678999985 8889999999884  334532    3   267899999998764421  12356777777776533 


Q ss_pred             --EEEEEEEeeeEeCCCceEEEEEEEE--eC---CeEEEEEE
Q 022429          245 --IAWVTMKTYIDIDTGPFNMTNVFEF--HN---GQWYMVHH  279 (297)
Q Consensus       245 --vAvv~~~e~v~~~~g~lraT~VfrR--~d---G~Wrlvhh  279 (297)
                        +-.|+|.-... ++...+.++.|..  .+   ++|.+...
T Consensus        90 gilI~V~G~l~~~-~~~~~~F~QtF~L~p~~~~~~~y~V~nD  130 (140)
T 3q90_A           90 GVVVQVMGLLSNN-NQALRRFMQTFVLAPEGSVANKFYVHND  130 (140)
T ss_dssp             CEEEEEEEEEECT-TCCCEEEEEEEEEEECSSSTTCEEEEEE
T ss_pred             CEEEEEEEEEecC-CCCccEEEEEEEEeecCCCCCCEEEEEE
Confidence              34445554432 2234567776655  33   78998764

>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*

Probab=81.12  E-value=17  Score=30.15  Aligned_cols=81  Identities=6%  Similarity=0.087  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEEEee
Q 022429          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTY  253 (297)
Q Consensus       174 a~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~~e~  253 (297)
                      +..++.+|+-..|...+.++|..|. |+.-...+...+|..-|.+-.+..-+.  ..++.+...+..-.|.+.+..|..+
T Consensus        25 lA~~Yi~AlT~hDy~~L~~Fynrds-Vf~D~ta~~~YtG~r~Ii~Fl~RaH~g--vLey~fnieHmfnsGsLVVmiGnY~  101 (154)
T 3gzb_A           25 LAVKYMDALTEHDYKTLITFYNRDS-IFFDKTANRKYTGGRFIIDFLERAHQG--VLEYDFNIEHMYNAGSLVVMIGNYH  101 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHTTCCTTC-EEEETTTTEEEESHHHHHHHHHHHTTT--CCCCEEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHhccCHHHHHHHhCccc-eeeeeccCcceeCcHHHHHHHHHHhhh--heeeccChhhhccCCcEEEEEccee
Confidence            4457889999999999999999995 555555677899999999866544433  3567666666788899999999988


Q ss_pred             eEeC
Q 022429          254 IDID  257 (297)
Q Consensus       254 v~~~  257 (297)
                      ..++
T Consensus       102 ~kGP  105 (154)
T 3gzb_A          102 FKGP  105 (154)
T ss_dssp             EEEE
T ss_pred             ecCc
Confidence            8763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d3cnxa1	153	d.17.4.17 (A:5-157) Uncharacterized protein SAV467	1e-20
d2ux0a1	135	d.17.4.7 (A:387-521) Association domain of calcium	3e-12
d2f86b1	129	d.17.4.7 (B:343-471) Association domain of calcium	1e-10
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	5e-09
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-08
d3b7ca1	121	d.17.4.16 (A:1-121) Uncharacterized protein SO0125	8e-07
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-06
d2r4ia1	122	d.17.4.15 (A:1-122) Uncharacterized protein CHU142	1e-06
d2rcda1	127	d.17.4.18 (A:1-127) Uncharacterized protein ECA350	1e-06
d3bb9a1	121	d.17.4.16 (A:27-147) Uncharacterized protein Sfri1	1e-06
d2owpa1	128	d.17.4.18 (A:1-128) Hypothetical protein BxeB1374	2e-06
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-06

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

 Score = 84.6 bits (208), Expect = 1e-20
 Identities = 31/146 (21%), Positives = 45/146 (30%), Gaps = 29/146 (19%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLN---------------ADYVKCIHASGELF 210
                V   N  F+  +       +S  WL                A  V C+H    + 
Sbjct: 4   TDVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVL 63

Query: 211 SGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTMKTYIDID------------- 257
           SG   V++S+ +     + + F + DV   V  D A VT    I                
Sbjct: 64  SGRGEVLRSYALIMANTEYIQFFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPL 123

Query: 258 -TGPFNMTNVFEFHNGQWYMVHHHSS 282
                  TNVF      W +  HH+S
Sbjct: 124 VGQLVVATNVFRRTPDGWKLWSHHAS 149

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 9/126 (7%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQ-IAF 224
              + ++ +  +    I      A ++            A G L  G +     ++ +  
Sbjct: 8   VRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLS 67

Query: 225 NWEQGVDFQVQDVRARVLTDIAWVTMKTYID--------IDTGPFNMTNVFEFHNGQWYM 276
              + +   + +    V+ + A       +           T     T V+   +G+W  
Sbjct: 68  KNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLN 127

Query: 277 VHHHSS 282
           VH+H S
Sbjct: 128 VHYHCS 133

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 6/123 (4%)

Query: 166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFN 225
           A  + +V V     + I  +     +R    +       A G L  G       +     
Sbjct: 6   AQKQDIVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGNRK 65

Query: 226 WEQGVDFQVQDVR-----ARVLTDIAWVTMKTYID-IDTGPFNMTNVFEFHNGQWYMVHH 279
            +        +V      A  +  +             T     + V+    G+W  VH 
Sbjct: 66  NQVHTTMLNPNVHIIGEDAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHV 125

Query: 280 HSS 282
           H S
Sbjct: 126 HRS 128

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 5e-09
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDSVIPVN- 159
            + +  I  + LSYLD  SLC   +      +  +D   WK L  +    +         
Sbjct: 16  ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAER 75

Query: 160 -GWKAYYAATRA 170
            GW  Y    + 
Sbjct: 76  RGWGQYLFKNKP 87

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 99  MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLE------- 151
            +  L  E+  + LS+L+   L + + T    R  A D+  W+    ++   E       
Sbjct: 18  FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRR 77

Query: 152 --QDSVIPVNGWKAYY 165
                    + WK+ Y
Sbjct: 78  KVIKPGFIHSPWKSAY 93

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein SO0125
species: Shewanella oneidensis [TaxId: 70863]

 Score = 45.2 bits (106), Expect = 8e-07
 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNW- 226
           T  +V +            L A  + +   + +  I  +G+  +G++  + +++  +   
Sbjct: 3   TDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLIS-NGKFRNGWDETLAAYKKNYPDK 61

Query: 227 EQGVDFQVQDVRARVLT-DIAWVTMKTYIDIDTGPFNM--TNVFEFHNGQWYMVHHHSS 282
           E   + +      ++L+   A V  +  +           T + E  + +W +   HSS
Sbjct: 62  ESLGELKFTIKEIKMLSNYAAMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDHSS 120

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 12/100 (12%)

Query: 101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNA-WKALYHKD-FTLEQDSVIPV 158
             L  EI+    +YL +  +      +    K      + WK L   + F   +      
Sbjct: 7   TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLN 66

Query: 159 NGWKAYYAATRAVVNVNAEFF--NIIRERSLPAMSRFWLN 196
                 Y        +   F     I +         W N
Sbjct: 67  LKLSQKYPKLSQQDRLRLSFLENIFILKN--------WYN 98

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]} Length = 122

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQG 229
            +++   +    I+   + ++     +   +  I  SGE      + I ++       + 
Sbjct: 6   VILDCEKKLLTAIQNNDVESLEVLLHD--DLLFIIPSGETV-TKETDIAAYSSGKIALRA 62

Query: 230 VDFQVQDVRARVLTDIAWVTMKTYIDID----TGPFNMTNVFEFHNGQWYMVHHHSSVM 284
           V      +R    T +  V ++   +         F    V++  +G W ++    + +
Sbjct: 63  VVPSDYIIRIIHDTVVVSVNIEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAGSCTAI 121

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 2/115 (1%)

Query: 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQG 229
            V      +   +    +  +   + + +      A   L+     +        +    
Sbjct: 14  DVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGENLYG-IEEIRAFRLARPSAGLD 72

Query: 230 VDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVM 284
              +   +      D+A  + +      T        +      W +V  H S+M
Sbjct: 73  RALRNTVIT-TYGHDMAVASTEFTRTGSTKIGRQMQTWVKMPEGWRIVAAHVSLM 126

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 9/121 (7%)

Query: 169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQ 228
            A  NV  +F   ++  +   + +    A  V+         S              + +
Sbjct: 3   SAAGNVVKQFHAALQMGNEAIVRQSL--AANVQIYEGGKVERSLTEYANHHMLADMAYLK 60

Query: 229 GVDFQVQDVRARVLTDIAWVTMKTYIDI--DTGPFNMTN-----VFEFHNGQWYMVHHHS 281
           G+    ++ +  +  DIA  T  ++          +        + +  +G+W + H H 
Sbjct: 61  GLTITPKEHQITITGDIAISTSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHW 120

Query: 282 S 282
           S
Sbjct: 121 S 121

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]} Length = 128

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Hypothetical protein BxeB1374
species: Burkholderia xenovorans [TaxId: 36873]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 4/117 (3%)

Query: 170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQG 229
            V     E+   + E  + AM+  + +         +        ++    +      + 
Sbjct: 11  QVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAEVQHG-GEAIRAWRERCEPVPKS 69

Query: 230 VDFQVQDVRARVLTDIAWVTMKTYIDIDTGPFNMTNVFEF--HNGQWYMVHHHSSVM 284
                  V      D A V+ +   D           +        W +V  H S++
Sbjct: 70  RKLHRTVVTTFGT-DFATVSTEFTSDATPLLGRQMQTWARLSPADGWKIVAAHVSLI 125

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 8e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW 140
           + L  E+     S L  P L ++S       + A+D++ W
Sbjct: 2   DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d3cnxa1	153	Uncharacterized protein SAV4671 {Streptomyces aver	99.95
d2owpa1	128	Hypothetical protein BxeB1374 {Burkholderia xenovo	99.84
d3b7ca1	121	Uncharacterized protein SO0125 {Shewanella oneiden	99.79
d2rcda1	127	Uncharacterized protein ECA3500 {Pectobacterium at	99.78
d2ux0a1	135	Association domain of calcium/calmodulin-dependent	99.77
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	99.74
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	99.72
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.7
d2f86b1	129	Association domain of calcium/calmodulin-dependent	99.7
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	99.69
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	99.67
d3cu3a1	162	Uncharacterized protein NpunR1993 {Nostoc punctifo	99.65
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.48
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.47
d3en8a1	127	Uncharacterized protein BxeB2092 {Burkholderia xen	99.02
d2rgqa1	133	Uncharacterized protein NpunR3134 {Nostoc punctifo	98.94
d3b8la1	144	Uncharacterized protein Saro3538 {Novosphingobium	98.88
d2bnga1	132	Uncharacterized protein Mb2760 {Mycobacterium tube	98.85
d2rfra1	153	Uncharacterized protein Saro3722 {Novosphingobium	98.81
d2k54a1	123	Uncharacterized protein Atu0742 {Agrobacterium tum	98.8
d1oh0a_	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	98.79
d2chca1	167	Uncharacterized protein Rv3472 {Mycobacterium tube	98.79
d1nwwa_	145	Limonene-1,2-epoxide hydrolase {Rhodococcus erythr	98.67
d3dm8a1	135	Uncharacterized protein Rpa4348 {Rhodopseudomonas	98.66
d3ejva1	159	Uncharacterized protein Saro2766 {Novosphingobium	98.63
d3dmca1	133	Uncharacterized protein Ava2261 {Anabaena variabil	98.63
d3ef8a1	149	Uncharacterized protein Saro1465 {Novosphingobium	98.6
d3ebta1	131	Uncharacterized protein BPSS0132 {Burkholderia pse	98.59
d1ohpa1	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	98.51
d3blza1	124	Uncharacterized protein Sbal0622 {Shewanella balti	98.51
d1s5aa_	139	Hypothetical protein YesE {Bacillus subtilis [TaxI	98.46
d3ec9a1	130	Uncharacterized protein BTHI0051 {Burkholderia tha	98.37
d2gexa1	138	Nogalamycin biosynthesis protein SnoL {Streptomyce	98.34
d2a15a1	132	Hypothetical protein Rv0760c {Mycobacterium tuberc	98.31
d1tuha_	131	Hypothetical protein egc068 from a soil-derived mo	98.29
d2f99a1	140	Aklanonic acid methyl ester cyclase, AknH {Strepto	98.27
d2geya1	144	Putative hydroxylase AclR {Streptomyces galilaeus	98.2
d1z1sa1	129	Uncharacterized protein PA3332 {Pseudomonas aerugi	98.13
d1tp6a_	126	Hypothetical protein PA1314 {Pseudomonas aeruginos	98.1
d1idpa_	147	Scytalone dehydratase {Fungus (Magnaporthe grisea)	97.84
d3ebya1	157	Putative hydroxylase subunit Saro3860 {Novosphingo	97.77
d1m98a2	142	Orange carotenoid protein, C-terminal domain {Cyan	97.7
d3dxoa1	117	Uncharacterized protein Atu0744 {Agrobacterium tum	97.69
d1sjwa_	142	Nogalonic acid methyl ester cyclase SnoaL {Strepto	97.57
d3e99a1	163	Benzoate 1,2-dioxygenase beta subunit BenB {Burkho	96.95
d2b1xb1	167	Naphthalene 1,2-dioxygenase beta subunit {Rhodococ	96.65
d1ulib_	177	Biphenyl dioxygenase small subunit BphA2 {Rhodococ	95.38
d1vqqa1	112	Penicillin binding protein 2a (PBP2A), N-terminal	94.95
d1wqlb1	182	Small subunit of cumene dioxygenase CumA2 {Pseudom	94.89
d1gy7a_	121	Nuclear transport factor-2 (NTF2) {Baker's yeast (	94.04
d1zo2a1	117	Nuclear transport factor-2 (NTF2) {Cryptosporidium	93.89
d2i9wa1	113	Hypothetical protein Psyc2064 {Psychrobacter arcti	93.65
d1gy6a_	125	Nuclear transport factor-2 (NTF2) {Rat (Rattus nor	93.25
d2qiya1	139	UBP3-associated protein BRE5 {Baker's yeast (Sacch	91.7
d1jkga_	139	NTF2-related export protein 1 (p15) {Human (Homo s	83.72

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

Probab=99.95  E-value=2e-27  Score=198.41  Aligned_cols=119  Identities=27%  Similarity=0.448  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccC---------------CceeeecCCCCCCCCHHHHHHHHHHHhccCCCce
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNA---------------DYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVD  231 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWadd---------------d~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~  231 (297)
                      ..++|++++++||+||++||+++|+++|++|               +.++|+||+++.+.|+++|+++|+.+|.......
T Consensus         5 d~~~v~aa~~af~~A~~~~D~~a~~~~w~~d~~~~~~~~~~~~~~~d~v~~~hpg~~~l~G~~ai~~~~~~~~~~~~~~~   84 (153)
T d3cnxa1           5 DVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMANTEYIQ   84 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHHTCSEEE
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHhhcccccccccccccccccccceeeecCCCccccCHHHHHHHHHHHhcccCccc
Confidence            4578999999999999999999999999754               4689999999999999999999999998887888


Q ss_pred             eEEEEeEEEEeCCEEEEEEEeeeEe---------CCC-----ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          232 FQVQDVRARVLTDIAWVTMKTYIDI---------DTG-----PFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       232 vei~dl~V~v~gDvAvv~~~e~v~~---------~~g-----~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      ++++++++.+.||+|++++.+++..         .+|     .+++|+||||+||+|||+|||+||++
T Consensus        85 ~~~~~~~v~v~gD~A~v~~~~~v~~~~~~~~~~~~~g~~~~~~~r~T~v~~k~dg~Wkivh~H~Sp~~  152 (153)
T d3cnxa1          85 FFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPDGWKLWSHHASPVL  152 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTTCCEEEEEEEEECC
T ss_pred             ceEEEeEEEEeCcEEEEEEEEEEEeecccccccccCCcccceeEEEEEEEEEECCEEEEEEEecCCcc
Confidence            9999999999999999999998753         112     36999999999999999999999875

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Hypothetical protein BxeB1374
species: Burkholderia xenovorans [TaxId: 36873]

Probab=99.84  E-value=1.1e-20  Score=152.25  Aligned_cols=117  Identities=13%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe-CCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL-TDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~-gDvA  246 (297)
                      ..+|++++++|++|+++||+++|+++|++|+.+++++|++ .+.|++++++.|+..+.....  .++.++.+++. +|+|
T Consensus         9 ~a~I~a~~~~~~~A~~~~D~~~l~~l~a~d~~~v~~~~~~-~~~g~~~i~~~~~~~~~~~~~--~~~~~~~i~~~g~d~A   85 (128)
T d2owpa1           9 VAQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGIAE-VQHGGEAIRAWRERCEPVPKS--RKLHRTVVTTFGTDFA   85 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECSSC-EEESHHHHHHHHHHSCCCCTT--CEEEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhccCCcEEEeeccc-eecchhHHHHHHHHhhccCcc--cccceeEEEEeeCceE
Confidence            4579999999999999999999999999999999999876 578999999999988876543  45556666764 4799


Q ss_pred             EEEEEeeeEeCCCceEEEEEEEEe--CCeEEEEEEecCCCCCC
Q 022429          247 WVTMKTYIDIDTGPFNMTNVFEFH--NGQWYMVHHHSSVMLVD  287 (297)
Q Consensus       247 vv~~~e~v~~~~g~lraT~VfrR~--dG~WrlvhhHaSp~~~~  287 (297)
                      ++++.++....+..-+.|+||+|.  +|+|||+|+|.|++++|
T Consensus        86 ~~~~~~~~~~~~~~Gr~t~v~~r~~~~~gWrIv~~H~S~~~~p  128 (128)
T d2owpa1          86 TVSTEFTSDATPLLGRQMQTWARLSPADGWKIVAAHVSLIAMP  128 (128)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECSTTTCEEEEEEEEEEECCC
T ss_pred             EEEEEEEEccCCcceeEEEEEEEcCCCCCEEEEEEeecCCCCC
Confidence            999988875322234899999996  57899999999998765

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein SO0125
species: Shewanella oneidensis [TaxId: 70863]

Probab=99.79  E-value=1.3e-18  Score=136.78  Aligned_cols=115  Identities=12%  Similarity=0.100  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEE-eCC
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARV-LTD  244 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v-~gD  244 (297)
                      .+.+|+++.++|.+|+++||+++++++|++|+.++++.|++ ...|+++|++.|...|... ...++...++.+.+ ++|
T Consensus         2 ~~~eI~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~~~~~-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   80 (121)
T d3b7ca1           2 PTDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNY   80 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHhccCcceEecCCc-ceecHHHHHHHHHHhhcccccccEEEEeeEEEEEcCCC
Confidence            36789999999999999999999999999999998888755 6899999999999998654 34577788888886 568


Q ss_pred             EEEEEEEeeeEeCC--CceEEEEEEEEeCCeEEEEEEecC
Q 022429          245 IAWVTMKTYIDIDT--GPFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       245 vAvv~~~e~v~~~~--g~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      +|++.+.......+  ...|.|.||+|++|+|||+|+|.|
T Consensus        81 ~a~~~~~~~~~~~~~~~~~r~T~v~~k~~g~WkIv~~H~S  120 (121)
T d3b7ca1          81 AAMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDHSS  120 (121)
T ss_dssp             EEEEEEEEEEECSSCCCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEEEcccCCCcceEEEEEEEEECCEEEEEEEeec
Confidence            99999988876533  457999999999999999999987

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=99.78  E-value=9.8e-19  Score=139.57  Aligned_cols=115  Identities=10%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-CE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-DI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-Dv  245 (297)
                      ..++|++++++|++|+.+||+++|+++|++|+.++++++++ .+.|++++++.|+..+....  ..++....+++.| |.
T Consensus        11 ~~aeI~a~~~~~~~A~~~~D~~~l~~l~a~D~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~--~~~~~~~~i~~~g~d~   87 (127)
T d2rcda1          11 VLADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGE-NLYGIEEIRAFRLARPSAGL--DRALRNTVITTYGHDM   87 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTE-EEESHHHHHHHHHHSCCTTC--CCEEEEEEEEEBTTSE
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCcEEEeCCCc-ccccHHHHHHHHHhcccccc--ceEeeeeEEEEeecch
Confidence            35689999999999999999999999999999999898765 68899999998887776543  4566777788766 58


Q ss_pred             EEEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          246 AWVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       246 Avv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      |++++.......+..-|.|+||+|++|+|||+|+|.|++
T Consensus        88 a~~~~~~~~~~~~~~Gr~T~v~~r~~ggWkIv~~H~S~~  126 (127)
T d2rcda1          88 AVASTEFTRTGSTKIGRQMQTWVKMPEGWRIVAAHVSLM  126 (127)
T ss_dssp             EEEEEEEECSSCCSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             hhheeeecccCCCCceEEEEEEEEcCCeEEEEEEEEecc
Confidence            888887665433344689999999999999999999976

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-18  Score=136.58  Aligned_cols=119  Identities=14%  Similarity=0.220  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTD  244 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gD  244 (297)
                      +..++|.+++++|++|+++||++++.++|++|..++++.+++....|+++++..|+.++... ....+.+.++.+.+.||
T Consensus         8 ~~~~eI~~l~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gd   87 (135)
T d2ux0a1           8 VRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGE   87 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECST
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHhCcCCCcEEEeccCCceechHHHHHHHHHHHhccCCcccEEEecceeEEEEcC
Confidence            45678999999999999999999999999999777666677777789999999999888544 34567788888988877


Q ss_pred             -EEEEEEEeeeEe--CCC-----ceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          245 -IAWVTMKTYIDI--DTG-----PFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       245 -vAvv~~~e~v~~--~~g-----~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                       .|++.+......  .+|     ..|.|+||+|++|+|||+|+|.|+.
T Consensus        88 daa~~~~~~~~~~~~~~g~~~~~~~r~T~V~~r~~g~Wkivh~H~S~a  135 (135)
T d2ux0a1          88 DAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWLNVHYHCSGA  135 (135)
T ss_dssp             TEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             cEEEEEEEEEEEEeccCCceeeEeEEEEEEEEEECCEEEEEEEEecCC
Confidence             454444443332  222     3699999999999999999999973

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=5.1e-18  Score=135.72  Aligned_cols=112  Identities=13%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gDvA  246 (297)
                      .++|+++.++|.+|++++|+++++++|++|  .+.+.|+|..+.|+++|++.|..++... ....++..++.+.+.||+|
T Consensus         2 e~~I~~l~~~~~~A~~~~D~d~~~~l~~~D--a~~~~~~g~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~v~~~gD~A   79 (128)
T d2gxfa1           2 EQQLKDIISACDLAIQNEDFDTLMNYYSED--AVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGDTV   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHTTSEEEE--EEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETTEE
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHhhccC--CcEecCCCcceeehHHHHHHHHHHHHhcccccceeecceeEeecCCce
Confidence            367999999999999999999999999998  3456777888999999999999999654 3567888888899999999


Q ss_pred             EEEEEeeeEe--CCC----ceEEEEEEEEe-CCeEEEEEEec
Q 022429          247 WVTMKTYIDI--DTG----PFNMTNVFEFH-NGQWYMVHHHS  281 (297)
Q Consensus       247 vv~~~e~v~~--~~g----~lraT~VfrR~-dG~WrlvhhHa  281 (297)
                      ++.+..++..  +++    ..+.|.||+|+ ||+|||++.|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~t~v~~r~~dG~Wki~~D~~  121 (128)
T d2gxfa1          80 LVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDNS  121 (128)
T ss_dssp             EEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEET
T ss_pred             EEEEEEEEEEcCCCCcccceEEEEEEEEECCCCcEEEEEECC
Confidence            9999998764  233    36899999995 89999995554

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=99.72  E-value=4.4e-17  Score=127.85  Aligned_cols=113  Identities=13%  Similarity=0.236  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      ..++|+++++++++|+.++|++++.++|++|  +++++|+|.. .+++++++.|..-+.  ....+.+.+..|.+.||+|
T Consensus         3 ~~~~I~~~~~~~~~A~~~~D~~~l~~l~~~d--~~~~~~~G~~-~~~~~~i~~~~~~~~--~~~~~~~~~~~v~~~gd~A   77 (122)
T d2r4ia1           3 QRDVILDCEKKLLTAIQNNDVESLEVLLHDD--LLFIIPSGET-VTKETDIAAYSSGKI--ALRAVVPSDYIIRIIHDTV   77 (122)
T ss_dssp             HHHHHTHHHHHHHHHHHHTCHHHHHHHEEEE--EEEECTTSCE-ECHHHHHHHHHTTCE--EEEEEEEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHhhhccc--EEEEecccee-ccHHHHHHHHhcCcc--cccceeeeeeEEEEEecee
Confidence            3568999999999999999999999999988  6778998854 468888887753221  2335778888999999999


Q ss_pred             EEEEEeeeEe--CCC----ceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          247 WVTMKTYIDI--DTG----PFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       247 vv~~~e~v~~--~~g----~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      ++++..++..  +|.    ..++|.||+|++|+|||+|+|.||+
T Consensus        78 v~~~~~~~~~~~~g~~~~~~~r~t~V~~k~~g~Wkiv~~h~S~~  121 (122)
T d2r4ia1          78 VVSVNIEIKGEYMEHTLDNTFRYLRVWKLFDGNWKVIAGSCTAI  121 (122)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEeeEEEEEEecCCCcceeeEEEEEEEEEECCEEEEEEEEeccc
Confidence            9999877764  232    3799999999999999999999986

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-17  Score=130.11  Aligned_cols=83  Identities=20%  Similarity=0.249  Sum_probs=68.4

Q ss_pred             ccccCCccchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhcccccccc---------CCcCCCCC
Q 022429           90 VAERGSGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQ---------DSVIPVNG  160 (297)
Q Consensus        90 ~~~~~~~~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~~~~---------~~~~~~~~  160 (297)
                      +.++.--.+++..||+||+++||+|||+.||+++++|||+|+++++|+.+||++|.+.+....         .......+
T Consensus         9 ~~~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~   88 (102)
T d2ovrb1           9 VIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSP   88 (102)
T ss_dssp             HHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCH
T ss_pred             HcCchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcC
Confidence            345666789999999999999999999999999999999999999999999999987764311         11123567


Q ss_pred             hhHHHHHHHHHH
Q 022429          161 WKAYYAATRAVV  172 (297)
Q Consensus       161 WKelY~~t~aI~  172 (297)
                      ||++|.....++
T Consensus        89 WK~~Y~~~~~l~  100 (102)
T d2ovrb1          89 WKSAYIRQHRID  100 (102)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999876653

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.70  E-value=5e-17  Score=126.90  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-  244 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-  244 (297)
                      +..++|.+++++|++|+++||+++++++|++|..+++..+.+....|++.++..|...+..  ...+.+.+.++++.|| 
T Consensus         6 a~~~eI~~~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~g~~   83 (129)
T d2f86b1           6 AQKQDIVRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGNRKN--QVHTTMLNPNVHIIGED   83 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTCCEETTHHHHTTSSSCSCC--SCEEEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHhhcCCceEEEecCCCceeehHHHHHHHHhhcccc--cccceeccceeEEcCCh
Confidence            4568899999999999999999999999999966655555566677888887765444332  4567888888888875 


Q ss_pred             EEEEEEEeeeEe--CCC-----ceEEEEEEEEeCCeEEEEEEecC
Q 022429          245 IAWVTMKTYIDI--DTG-----PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       245 vAvv~~~e~v~~--~~g-----~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      +|++.+......  .+|     ..|+|.||+|++|+|||+|+|.|
T Consensus        84 ~av~~~~~~~~~~~~~g~~~~~~~r~T~V~~k~~g~Wkivh~H~S  128 (129)
T d2f86b1          84 AACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVHRS  128 (129)
T ss_dssp             EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             heeEEEEEEEEEeccCCCcccccEEEEEEEEEECCEEEEEEEEeC
Confidence            676665544433  233     26899999999999999999987

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=99.69  E-value=1.5e-16  Score=126.12  Aligned_cols=115  Identities=12%  Similarity=0.144  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEe-EEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDV-RARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl-~V~v~gDv  245 (297)
                      ...+|++++++|.+|+++||++++.++|++|  .+.+.|+++.+.|+++|++.|+..++.... ....... .+.+.||+
T Consensus         6 ~~~aI~~~~~~y~~A~~~~D~~~~~~l~t~D--av~~~~~~~~~~G~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~   82 (132)
T d3d9ra1           6 ELAVIEAAAIAYLTAFNRADIPAVIATYTDD--GVLMGPGRPAAVGKDELAEVYLSVFETVGF-DMAYEIKEVVQTSADW   82 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHTEEEE--EEEECTTSCCEESHHHHHHHHHHHHHHEEE-EEEEEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHhcCCC--eEEEccCCcceehHHHHHHHHHHHhhcCCc-ceeeeccceeeecCCc
Confidence            3568999999999999999999999999988  455788888899999999999998865432 2332333 35588999


Q ss_pred             EEEEEEeeeEe--C-CC-----ceEEEEEEEEe-CCeEEEEEEecCCC
Q 022429          246 AWVTMKTYIDI--D-TG-----PFNMTNVFEFH-NGQWYMVHHHSSVM  284 (297)
Q Consensus       246 Avv~~~e~v~~--~-~g-----~lraT~VfrR~-dG~WrlvhhHaSp~  284 (297)
                      |++.+...+..  . ++     ..+.|.||+|+ ||+|||++||.|+.
T Consensus        83 A~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~r~~dG~Wki~~~~~s~~  130 (132)
T d3d9ra1          83 AFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI  130 (132)
T ss_dssp             EEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             eEEEEEEEEEEEecCCCcceecceeEEEEEEECCCCcEEEEEEEecCC
Confidence            99998877653  2 22     24789999995 88999999998864

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.67  E-value=2.3e-16  Score=123.25  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHH-HHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQ-IAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~-~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      .++.++.++|++|+++||++++.++|++|  ++.+.|++ ...|++++++.+. ..+.......+++.+++|++.||+|+
T Consensus         3 ~a~~~v~~~~~~A~~~~D~~~~~~l~a~D--~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~gd~A~   79 (121)
T d3bb9a1           3 SAAGNVVKQFHAALQMGNEAIVRQSLAAN--VQIYEGGK-VERSLTEYANHHMLADMAYLKGLTITPKEHQITITGDIAI   79 (121)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHEEEE--EEEEETTE-EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEETTEEE
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHhhCCC--eEEEeCCC-ccCcHHHHHHHHHhhhhhcccCceEEEEEEEEEEcCCeeE
Confidence            57889999999999999999999999998  55577755 4678999888653 33444345678999999999999999


Q ss_pred             EEEEeeeEe--CCCc----eEEEEEEEE-eCCeEEEEEEecC
Q 022429          248 VTMKTYIDI--DTGP----FNMTNVFEF-HNGQWYMVHHHSS  282 (297)
Q Consensus       248 v~~~e~v~~--~~g~----lraT~VfrR-~dG~WrlvhhHaS  282 (297)
                      +++...+..  ++++    .+.|.|++| .||+|||+|+|.|
T Consensus        80 ~~~~~~~~~~~~g~~~~~~~~~t~v~~r~~dG~WkIv~~H~S  121 (121)
T d3bb9a1          80 STSISHAQGEYKGKSIDSMTMETLVLIKQADGRWKITHVHWS  121 (121)
T ss_dssp             EEEEEEEEECCC--CEEEEEEEEEEEEECTTSCEEEEEEEEC
T ss_pred             EEEEEEEEeeccCCcceeeEEEEEEEEEccCCeEEEEEEeeC
Confidence            999988875  3333    467777766 5899999999987

>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein NpunR1993
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.65  E-value=9e-16  Score=127.68  Aligned_cols=117  Identities=14%  Similarity=0.104  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEE-EeC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRAR-VLT  243 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~-v~g  243 (297)
                      +..++|+++.++|.+|+++||+++++++|++|.  +++.++++...|+++|++.|+..|... ....+++..+.|+ +.+
T Consensus         4 sDe~aI~al~~~~~~A~~~~D~d~~~~l~a~D~--~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~   81 (162)
T d3cu3a1           4 ADESAIRAFHRQMIDAWNRGSGEGFAAPFSETA--DFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNS   81 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHhhccCe--eeecccccccCCHHHHHHHHHHHHhhcccceeEEeeceEEEEecC
Confidence            356789999999999999999999999999984  457788888899999999999988644 3456777888777 678


Q ss_pred             CEEEEEEEeeeEeC--CC-----ceEEEEEEEEeCCeEEEEEEecCCC
Q 022429          244 DIAWVTMKTYIDID--TG-----PFNMTNVFEFHNGQWYMVHHHSSVM  284 (297)
Q Consensus       244 DvAvv~~~e~v~~~--~g-----~lraT~VfrR~dG~WrlvhhHaSp~  284 (297)
                      |+|++.+...+...  ++     ..+.|.||+|++|+|||+|+|.+.-
T Consensus        82 d~Avv~~~~~~~~~~~~~~~~~~~~r~t~Vl~K~dG~WrIa~~H~tr~  129 (162)
T d3cu3a1          82 QLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRK  129 (162)
T ss_dssp             TEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCBC
T ss_pred             CEEEEEEEEEEeecCCCCCCcceeEEEEEEEEEECCEEEEEEEeccCc
Confidence            99999999887652  21     2689999999999999999999874

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.6e-15  Score=98.93  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             hcccHHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhh
Q 022429          101 EQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAW  140 (297)
Q Consensus       101 ~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lW  140 (297)
                      +.||+||+.+||+|||++||+++++|||+||++++|+.||
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999999

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.6e-15  Score=117.31  Aligned_cols=54  Identities=26%  Similarity=0.415  Sum_probs=48.7

Q ss_pred             ccchhhccc----HHHHHHHhcCCChhhHhhhhccChHHHHHcCCchhhhhhhccccc
Q 022429           96 GASMMEQLV----PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFT  149 (297)
Q Consensus        96 ~~~~l~~LP----~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a~d~~lWr~l~~~~~~  149 (297)
                      -.+++..||    +||+++||||||+.||+++++|||+|+++++|+.|||++|.+.+.
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~   64 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcc
Confidence            356788888    499999999999999999999999999999999999999876543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1e-14  Score=113.27  Aligned_cols=51  Identities=18%  Similarity=0.315  Sum_probs=46.6

Q ss_pred             cchhhcccHHHHHHHhcCCChhhHhhhhccChHHHHHc-CCchhhhhhhccc
Q 022429           97 ASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAA-NDDNAWKALYHKD  147 (297)
Q Consensus        97 ~~~l~~LP~Eil~~IlsyLd~~sL~~~s~vcr~~~~~a-~d~~lWr~l~~~~  147 (297)
                      .+++..||+||+++||||||+.||+++++|||+|++++ +|+.|||+++.+.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            47889999999999999999999999999999999986 6778999997655

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein BxeB2092
species: Burkholderia xenovorans [TaxId: 36873]

Probab=99.02  E-value=3.6e-09  Score=83.88  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      .++++++.++||+|+++||++++.+++++|.  +...| ++..+.|++++++.|+.+....    ..++..++...|+.+
T Consensus         3 ~e~~~~~v~~~~~A~~~gD~da~~~l~adD~--v~~~p~~~~~~~G~e~i~~~~~~~~~~~----~~~~~~~~~~~g~~v   76 (127)
T d3en8a1           3 EEKIREALNAHWQASAAGDFDAEHDIYDDDA--ICDYPQSGERILGRMNLQALRSHHPGKP----AGFEVRRIQGEGNLW   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHTTTEEEEE--EEEETTTTEEEESHHHHHHHHHHTTCSC----SEEEEEEEEEETTEE
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHhcCCE--EEEcCCcccccchHHHHHHHHHHHhccC----ccceeEEEecCCCEE
Confidence            4678999999999999999999999999994  33444 5668899999999877654332    234445677889988


Q ss_pred             EEEEEeeeEeCCCceEEEEEEEEeCCeEEEEEEecCCCCCCCccccccc
Q 022429          247 WVTMKTYIDIDTGPFNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQVV  295 (297)
Q Consensus       247 vv~~~e~v~~~~g~lraT~VfrR~dG~WrlvhhHaSp~~~~~~~~~~~~  295 (297)
                      ++....  ..++...++..+|+-+||...-...+-+.+..++.--+|.|
T Consensus        77 v~~~~~--t~~~~~~~~~~~f~~~dGkI~~~~~Y~~~~~~~p~~r~~~~  123 (127)
T d3en8a1          77 ITEYSI--SYNGRPAYTVSIMEFRNGKVVHETQYFSDPFEAPGWRSQWV  123 (127)
T ss_dssp             EEEEEE--EETTEEEEEEEEEEEETTEEEEEEEEEECCCCCCGGGGGGC
T ss_pred             EEEEEE--CCCCcceEEEEEEEEECCEEEEEEEecCCCCCCcHHHHHHh
Confidence            876543  32344578899999999998877777766666666666665

>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein NpunR3134
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=1.6e-08  Score=80.52  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccC-CCceeEEEEeEEEEeCCE
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWE-QGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~-~~~~vei~dl~V~v~gDv  245 (297)
                      ...+|+++..+|..++..+|.+.+.++|++|...  ..+++ ...|+++|++.+...+... ....+.+..+.|.+.||.
T Consensus         7 Dr~~I~~L~~ry~~~~D~~d~~~~~~~FteDa~~--~~~~~-~~~G~~~i~~~~~~~~~~~~~~~~H~~~n~~i~~~gd~   83 (133)
T d2rgqa1           7 DKLEIMELAARFEMSLDKEDVENYLATFASDGAL--QGFWG-IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGNYDE   83 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEE--EETTE-EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSE
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHhhccCCcEE--EcCCc-ccCCHHHHHHHHHHHhhhcccccceecCCeEEEEcCCE
Confidence            4568999999999999999999999999999533  45555 6789999999998777543 344567888889999999


Q ss_pred             EEEEEEeeeEeCCC-----ceEEEEEEEEeCCeEEEEEEecCC
Q 022429          246 AWVTMKTYIDIDTG-----PFNMTNVFEFHNGQWYMVHHHSSV  283 (297)
Q Consensus       246 Avv~~~e~v~~~~g-----~lraT~VfrR~dG~WrlvhhHaSp  283 (297)
                      |.+.+...+...++     .-++-..|+|+||+|||..++-..
T Consensus        84 A~~~~~~~~~~~~~~~~~~~g~Y~D~~~k~dg~W~i~~R~~~~  126 (133)
T d2rgqa1          84 ATMESYLTVVNREDLNRAGSAFVKDQVRKINGKWYLILRQIEV  126 (133)
T ss_dssp             EEEEEEEEEEESSSSCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEEEecCCceEEEEEEEEEEEEEECCEEEEEEEEEEE
Confidence            99887766654222     247788899999999999998653

>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3538
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=98.88  E-value=1.8e-08  Score=80.87  Aligned_cols=117  Identities=7%  Similarity=-0.041  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEE-EEeC
Q 022429          166 AATRAVVNVNAEFFNIIRE-RSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRA-RVLT  243 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~a-gDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V-~v~g  243 (297)
                      ....+|+++..+|..++.. ||.+.+..+|++|........++....|++++++.|+..+.........+..+.| .+.|
T Consensus         6 eD~~aI~~L~~~Y~~~~D~~~d~d~~~~lFt~D~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~H~~~n~~i~~~~~   85 (144)
T d3b8la1           6 EDRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGIGLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEG   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGGTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHCcCCCHHHHHhhccCCEEEEecCccCcccccHHHHHHHHHHHhccCccEEEEeecccceecCC
Confidence            3567899999999999976 7999999999999643222234556789999999998888654333456677776 4788


Q ss_pred             CEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCeEEEEEEecC
Q 022429          244 DIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       244 DvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      |.|.+........  .++.     .++...|+|++|+|||.+++-.
T Consensus        86 ~~A~~~~~~~~~~~~~~~~~~~~~g~Y~d~~~r~~g~WrI~~r~~~  131 (144)
T d3b8la1          86 DTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEKGWKATRYTMD  131 (144)
T ss_dssp             SEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEEcccCceEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            8988876654432  2332     4789999999999999998764

>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Uncharacterized protein Mb2760
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2.7e-08  Score=78.73  Aligned_cols=117  Identities=11%  Similarity=0.044  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      |.+-.++.++||+|++++|++++.++|++|.  +...|+.+...|++++++.++.++...   .++++..++...||.++
T Consensus         2 t~e~~~~V~~f~~A~~~~D~d~~~~~~a~D~--v~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~gd~v~   76 (132)
T d2bnga1           2 TTEAIRAVEAFLNALQNEDFDTVDAALGDDL--VYENVGFSRIRGGRRTATLLRRMQGRV---GFEVKIHRIGADGAAVL   76 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHEEEEE--EEEETTTEEEECHHHHHHHHHTTTTTC---EEEEEEEEEEEETTEEE
T ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHhccch--heeccccCCcchHHHHHHHHHhccccc---CcceEEEEeeccCCceE
Confidence            5666788999999999999999999999994  445666667899999999887765543   46677777889999988


Q ss_pred             EEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEecCCCCCCCccccc
Q 022429          248 VTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQ  293 (297)
Q Consensus       248 v~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHaSp~~~~~~~~~~  293 (297)
                      .....+...+|++  +.+..+|+-+||  ||+.++.-  .+..+.-+|
T Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~~v~dG--kI~~~~~y--~D~~~~~~~  120 (132)
T d2bnga1          77 TERTDALIIGPLRVQFWVCGVFEVDDG--RITLWRDY--FDVYDMFKG  120 (132)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEETT--EEEEEEEE--CCHHHHHHH
T ss_pred             EEEEEEEEECCcEEEEEEEEEEEEcCC--EEEEEEEE--eCHHHHHHH
Confidence            8877666655554  567888988999  58887763  344444333

>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3722
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=98.81  E-value=2.2e-08  Score=80.84  Aligned_cols=118  Identities=10%  Similarity=0.059  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHh---ccCCCceeEEEEeEEEEe
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAF---NWEQGVDFQVQDVRARVL  242 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if---~~~~~~~vei~dl~V~v~  242 (297)
                      .+..+|+++..+|..++.++|.+.+.++|++|..+  ..++.+...|.+.+++.+....   .......+.+..+.|.+.
T Consensus        15 ed~~aI~~l~~~y~~~~D~~d~~~~~~lFt~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~i~~~~i~~~   92 (153)
T d2rfra1          15 EDREEIRELIARYGPLADSGDAEALSELWVEDGEY--AVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE--EETTSCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHhhccCCEEE--EeeccccccccchHHHHHHHHHhhccCCCcEEEEeCCEEEEEc
Confidence            46678999999999999999999999999998433  4454556778877766544443   222233566778888999


Q ss_pred             CCEEEEEEEeeeEe--CCC-----ceEEEEEEEEeCCeEEEEEEecCCCC
Q 022429          243 TDIAWVTMKTYIDI--DTG-----PFNMTNVFEFHNGQWYMVHHHSSVML  285 (297)
Q Consensus       243 gDvAvv~~~e~v~~--~~g-----~lraT~VfrR~dG~WrlvhhHaSp~~  285 (297)
                      ||.|.+.+...+..  .++     ..+++..|+|++|+|||.+++..+..
T Consensus        93 ~d~a~~~~~~~~~~~~~~~~~~~~~g~y~d~~~r~~g~WkI~~r~~~~l~  142 (153)
T d2rfra1          93 GDTATARCHSVVFRCVSGTFGSHRVSANRWTFRRTPAGWRAVRRENALLD  142 (153)
T ss_dssp             TTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred             CCeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEECCEEEEEEEEEEecC
Confidence            99999988766543  232     24788999999999999999987754

>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0742-like
domain: Uncharacterized protein Atu0742
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.80  E-value=2.7e-08  Score=78.08  Aligned_cols=101  Identities=10%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv  248 (297)
                      .++.++.++||+||++||++++.++|++|... ...|++....|+++++..|...++..   .+..+..++.+.||.+++
T Consensus         3 ~~~~~~V~~~~~A~~~~D~e~~~~~~aeD~~~-~~~~~~~~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~gd~vv~   78 (123)
T d2k54a1           3 SEIELPVQKQLEAYNARDIDAFMAWWADDCQY-YAFPATLLAGNAAEIRVRHIERFKEP---DLYGELLTRVIVGNVVID   78 (123)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHTEEEEEEE-EETTTEEEEESHHHHHHHHHHHTTCT---TCEEEEEEEEEETTEEEE
T ss_pred             ccHHHHHHHHHHHHhCCCHHHHHHhcCCCeEE-EcCCCcceechHHHHHHHHHhhhccc---cceeeeEEEEecCCEEEE
Confidence            45778899999999999999999999999433 22345677889999999998888653   345666678889999888


Q ss_pred             EEEeeeEeCCC--ceEEEEEEEEeCCe
Q 022429          249 TMKTYIDIDTG--PFNMTNVFEFHNGQ  273 (297)
Q Consensus       249 ~~~e~v~~~~g--~lraT~VfrR~dG~  273 (297)
                      ....+....|+  .+....+|+-+||.
T Consensus        79 ~~~~~~~~~g~~~~~~~~~vf~~~dGk  105 (123)
T d2k54a1          79 HETVTRNFPEGKGEVDVACIYEVENGR  105 (123)
T ss_dssp             EEEEECCBTTBCCEEEEEEEEEEETTE
T ss_pred             EEEEEEEcCCCeEEEEEEEEEEEECCE
Confidence            77766554444  36888899999985

>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Pseudomonas putida [TaxId: 303]

Probab=98.79  E-value=2.2e-08  Score=77.73  Aligned_cols=109  Identities=8%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-E
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-I  245 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-v  245 (297)
                      .++++++.++|++|++++|+++++++|++|.  +...| +++.+.|+++|++.|+..+.........+  ..+.+.|+ .
T Consensus         4 ~e~~~~~v~~y~~a~~~~D~d~~~~l~~~d~--~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   79 (125)
T d1oh0a_           4 AQEVQGLMARYIELVDVGDIEAIVQMYADDA--TVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLT--GPVRASHNGC   79 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHEEEEE--EEESSTTSCCEEHHHHHHHHHHHHHSSSCCEEEES--SCCEECSSSE
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhCCCE--EEECCCCCcccccHHHHHHHHHHHHHhcccceEEE--EEEEEcCCCE
Confidence            5689999999999999999999999999994  33444 55678999999999999987654433332  23455555 4


Q ss_pred             EEEEEEeeeEeCCCc--eEEEEEEEE-eCCeEEEEEEecC
Q 022429          246 AWVTMKTYIDIDTGP--FNMTNVFEF-HNGQWYMVHHHSS  282 (297)
Q Consensus       246 Avv~~~e~v~~~~g~--lraT~VfrR-~dG~WrlvhhHaS  282 (297)
                      +.++.......+|..  ++...+|+. .||  ||++++.-
T Consensus        80 ~~~~~~~~~~~~g~~~~~~~~~~~~~d~dG--kI~~~~~y  117 (125)
T d1oh0a_          80 GAMPFRVEMVWNGQPCALDVIDVMRFDEHG--RIQTMQAY  117 (125)
T ss_dssp             EEEEEEEEEESSSSEEEEEEEEEEEECTTS--CEEEEEEE
T ss_pred             EEEEEEEEeccccceEEEEEEEEEEECCCC--eEEEEEEE
Confidence            555555444434443  678888888 455  67777653

>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein Rv3472
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=7.4e-08  Score=80.23  Aligned_cols=116  Identities=9%  Similarity=0.045  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe
Q 022429          163 AYYAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL  242 (297)
Q Consensus       163 elY~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~  242 (297)
                      +.+.+..+|+++..+|..++.+||.+.+..+|++|..  ...+++ ...|+++|.+.++..... ....+.+..+.+.+.
T Consensus         6 ~~~~D~~eI~~Li~~Ya~aiD~~d~d~~~~lFteDa~--~~~~~~-~~~g~~~I~~~~~~~~~~-~~~~H~~~n~~i~i~   81 (167)
T d2chca1           6 EQWIEILRIQALCARYCLTINTQDGEGWAGCFTEDGA--FEFDGW-VIRGRPALREYADAHARV-VRGRHLTTDLLYEVD   81 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEE--EEETTE-EEESHHHHHHHHHHHHHH-CCCCEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCHHHHHHhccCCeE--EEeCCc-ccccHHHHHHHHHHhccc-cceEEEccccEEEec
Confidence            4567889999999999999999999999999999953  344544 688999999866654433 334577888889999


Q ss_pred             CCEEEEEEEeeeEe--CCCc-----eEEEEEEEEeCCeEEEEEEecC
Q 022429          243 TDIAWVTMKTYIDI--DTGP-----FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       243 gDvAvv~~~e~v~~--~~g~-----lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      ||.|.+.+...+..  .++.     -+++..|+|++|+|||..++-.
T Consensus        82 gd~A~~~~~~~~~~~~~~~~~~~~~G~Y~D~~~r~dg~WkIs~R~~~  128 (167)
T d2chca1          82 GDVATGRSASVVTLATAAGYKILGSGEYQDRLIKQDGQWRIAYRRLR  128 (167)
T ss_dssp             TTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEEEecCcceEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            99999887755432  2321     3889999999999999999864

>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Limonene-1,2-epoxide hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.67  E-value=3.3e-07  Score=73.34  Aligned_cols=107  Identities=11%  Similarity=0.148  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWV  248 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv  248 (297)
                      ..-+++.++||+|++++|++++.+++++|...  ..|++....|++++++.|+.++....  ....+...+.+.||.+++
T Consensus        18 ~~~~~lv~~~~~A~~~~D~~~~~~~~~~D~~~--~~~~~~~~~G~e~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~   93 (145)
T d1nwwa_          18 TPDEKIVLEFMDALTSNDAAKLIEYFAEDTMY--QNMPLPPAYGRDAVEQTLAGLFTVMS--IDAVETFHIGSSNGLVYT   93 (145)
T ss_dssp             SHHHHHHHHHHHHGGGCCHHHHHTTBCSSCEE--EETTSCCEESHHHHHHHHHHHHHHEE--EEEEEEEEEEEETTEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHhccceE--ecCCcccccCHHHHHHHHHhhhhhcc--cccceEEEEEecCceEEE
Confidence            34457789999999999999999999999633  33445578999999999998886543  344555668889998888


Q ss_pred             EEEeeeEe-CCC---ceEEEEEEEEeCCeEEEEEEec
Q 022429          249 TMKTYIDI-DTG---PFNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       249 ~~~e~v~~-~~g---~lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ........ .+|   .++.+.+|+-+||  ||+..|.
T Consensus        94 ~~~~~~~~~~~G~~~~~~~~~~~~~~DG--KI~~~~~  128 (145)
T d1nwwa_          94 ERVDVLRALPTGKSYNLSILGVFQLTEG--KITGWRD  128 (145)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEeeecccccCCceeEEEEEEEEEEcCC--EEEEEEE
Confidence            77665554 334   3788999999988  6777665

>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein Rpa4348
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=98.66  E-value=1.7e-07  Score=73.81  Aligned_cols=109  Identities=9%  Similarity=0.042  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeee-----cCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCI-----HASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cv-----hPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      ...++.++||+|+++||++.+..++++|..-...     +|-+....|++++++.|+.+++....  ++++...+...||
T Consensus         5 ~~~~~~~~~y~A~~~~d~d~~~~l~~~D~~~~~~g~~~~~P~~G~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d   82 (135)
T d3dm8a1           5 SLWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRI--YRYHRESVMLGID   82 (135)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEE--EEEEEEEEEECSS
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHhcCcceEEEccccccccccccccccchhhhhhhhhccccccc--eeeeeeeEEecCc
Confidence            4667889999999999999999999999543322     23334678999999999988865433  4455566778999


Q ss_pred             EEEEEEEeeeEe-CCCc---eEEEEEEEEeCCeEEEEEEecC
Q 022429          245 IAWVTMKTYIDI-DTGP---FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       245 vAvv~~~e~v~~-~~g~---lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .+++.+..+... ..|.   +....+|+-+||  ||+.++..
T Consensus        83 ~v~v~~~~~~~~~~tG~~~~~~~~~~~~~~dG--kI~~~~~y  122 (135)
T d3dm8a1          83 SAASMVRYSLTAAGTNRPISVRMALFTQFQNG--RLTNLRMV  122 (135)
T ss_dssp             EEEEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             eEEEEEEEeEEeeccceEEEEEEEEEEEEECC--EEEEEEEE
Confidence            999988888765 3342   688889999999  67777654

>d3ejva1 d.17.4.28 (A:2-160) Uncharacterized protein Saro2766 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro2766
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=98.63  E-value=4.4e-07  Score=74.06  Aligned_cols=116  Identities=11%  Similarity=0.097  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC------CCCCCHHHHHHHHHHHhccCCC---ceeEEEEe
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG------ELFSGYNSVIQSWQIAFNWEQG---VDFQVQDV  237 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg------~~l~Gr~aVr~sW~~if~~~~~---~~vei~dl  237 (297)
                      ...+|+++..+|..++.++|.+.+.++|++|..+......+      ..+.|+++|++.++..+.....   ....+..+
T Consensus         4 D~~aI~~l~~rY~~~~D~~d~d~~~~lFteDa~~~~~~~~g~~~~~~~~~~Gr~~i~~~~~~~~~~~~~~~~~~H~~~n~   83 (159)
T d3ejva1           4 DETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAP   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCeEEEEecCCCCcccccchhhhHHHHHHHHHhhhhccCccceeEeccCCe
Confidence            46789999999999999999999999999996443222211      2478999999999887753322   24668888


Q ss_pred             EEEEeCCEEEEEEEeeeEe----C--CC-----------------ceEEEEEEEEeCCeEEEEEEecC
Q 022429          238 RARVLTDIAWVTMKTYIDI----D--TG-----------------PFNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       238 ~V~v~gDvAvv~~~e~v~~----~--~g-----------------~lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .|.+.||.|.+.+...+..    +  .+                 .-++...|+|++|+|||..+.-.
T Consensus        84 ~I~v~gd~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Y~d~~~r~~g~WrI~~r~~~  151 (159)
T d3ejva1          84 IIVIEGDHAVLDAQFMVFSILAAEVPDGGWPTGTFGAQGRIVPIEAGQYRLTLRTVADGWVISAMRIE  151 (159)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEECCCCTTCCCTTCCSCCEEEEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEeCCeEEEEEEEEEEEeeccccccCccceeecccCCCceEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            8999999988877644321    1  01                 02688899999999999998754

>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein Ava2261
species: Anabaena variabilis [TaxId: 1172]

Probab=98.63  E-value=4.5e-07  Score=71.76  Aligned_cols=109  Identities=7%  Similarity=-0.091  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC---CCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE---LFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~---~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      +..+++.++|++|+++||++++.+++++|.  +...|+++   ...|++++++.|+.++...+...+..+..++...||.
T Consensus        11 ~~a~~~~e~f~~a~~~gD~d~~~~l~~~D~--~~~~p~~~~~g~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   88 (133)
T d3dmca1          11 KVAHQGFEFFTQGLATGEWQKFLDMLTEDF--TFWFPMGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVTSNETT   88 (133)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHTTEEEEE--EEEESSGGGBEEEESHHHHHHHHHHHHHTCTTCEEEEEEEEEEECSSE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhccce--EEEecCCCcccchhhHHHHHHHhhhcccccccccceeeEEEEecCCCE
Confidence            446788899999999999999999999994  33456543   3579999999888887654332355666668889998


Q ss_pred             EEEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEec
Q 022429          246 AWVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       246 Avv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +++.+.......|.+  ..+-.||+-+||  ||++.+.
T Consensus        89 vvve~~~~~~~~G~~~~~~~~~vf~v~dG--kI~~~re  124 (133)
T d3dmca1          89 VVFEFRDEGLFLGKPYKNRVAVSFDVRGD--KICSYRE  124 (133)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEEEEEEEeecceEEeccEEEEEEEECC--EEEEEEE
Confidence            888877665544544  466778888998  6666654

>d3ef8a1 d.17.4.28 (A:1-149) Uncharacterized protein Saro1465 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro1465
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=98.60  E-value=2.7e-07  Score=74.00  Aligned_cols=115  Identities=10%  Similarity=0.072  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeC-
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLT-  243 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~g-  243 (297)
                      ..+..+|+++...|..++.++|.+.+..+|++|..+ ...+ .....|++++++.++..+.........+..+.+...| 
T Consensus         6 L~d~~aI~~l~~~Y~~~~D~~d~~~~~~lFt~Da~~-~~~~-~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~v~~~~~   83 (149)
T d3ef8a1           6 LVEMRAIERMMFDYSYHLDMNHPEELAALFVEDCEV-SYAP-NFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSE   83 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE-EEET-TEEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHhhCCCceEE-EEec-CcccccHHHHHHHHHHHhccCCeEEEEecCceEEecCC
Confidence            345678999999999999999999999999999643 2233 3357899999998877665433334555666676654 


Q ss_pred             CEEEEEEEeeeE--e-CCCc-----eEEEEEEEEeCCeEEEEEEec
Q 022429          244 DIAWVTMKTYID--I-DTGP-----FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       244 DvAvv~~~e~v~--~-~~g~-----lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +.|.+.+.-.+.  . +++.     -++...|+|++|+|||....-
T Consensus        84 ~~a~~~~~~~~~~~~~~~~~~~~~~g~Y~d~~~r~~g~Wki~~r~~  129 (149)
T d3ef8a1          84 TEANVRSVVLAIHRYTKERPDGILYGQYFDTVVKVDGQWKFKRREL  129 (149)
T ss_dssp             TEEEEEEEEEEEEEESSSSCCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             ceeEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECCEEEEEEEEE
Confidence            577766654332  1 3332     478999999999999988754

>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Uncharacterized protein BPSS0132
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=98.59  E-value=4.8e-07  Score=70.13  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-------CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-------GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-------g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      +++.++||+|+++||++++..++++|.  ...+|+       +....|++++++.|+.++....  .+.++...+...||
T Consensus         5 ~~~v~~~~~a~~~~D~~~~~~~~a~D~--~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~   80 (131)
T d3ebta1           5 MQTVRESYEAFHRRDLPGVLAALAPDV--RWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIA--EMRLAPDEFIESGE   80 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEE--EEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEE--EEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhCcce--EEEEcCCCcccCccccccchHHHHHhhhhhccccC--cceeeEEEEEeccc
Confidence            577889999999999999999999994  334443       3356899999999988876543  45566677888999


Q ss_pred             EEEEEEEeeeEeCCC-c--eEEEEEEEEeCCeEEEEEEecCCCCCCCccccc
Q 022429          245 IAWVTMKTYIDIDTG-P--FNMTNVFEFHNGQWYMVHHHSSVMLVDGEVEQQ  293 (297)
Q Consensus       245 vAvv~~~e~v~~~~g-~--lraT~VfrR~dG~WrlvhhHaSp~~~~~~~~~~  293 (297)
                      .+++.+.......+| .  ++...+|+-+||  ||+.++.-  .+...+.+|
T Consensus        81 ~v~~~~~~~~~~~~G~~~~~~~~~~~~~~dG--kI~~~~~y--~D~~~~~~~  128 (131)
T d3ebta1          81 RIVVLGTRRVTAVNGRSATLKFVHVWRFENG--RAVTFEDH--FDTAEMIRL  128 (131)
T ss_dssp             EEEEEEEEEEEETTSCEEEEEEEEEEEEETT--EEEEEEEE--CCHHHHHHH
T ss_pred             eEEEEEEEEEEecCCCeeEEEEEEEEEEECC--EEEEEEEE--ECHHHHHHH
Confidence            988888877765444 3  577888998998  67776653  334444433

>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]

Probab=98.51  E-value=5.7e-07  Score=68.71  Aligned_cols=107  Identities=10%  Similarity=0.183  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecC-CCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHA-SGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIA  246 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhP-gg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvA  246 (297)
                      .++++++.++|++|++++|++++.++|++|.  +...| ++....|+++|++.|+..+...+.  +.+. ..+.+.++.+
T Consensus         4 ~e~~~~~v~~~~~a~~~~D~~~~~~l~a~D~--~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~--~~~~-~~~~~~~~~~   78 (125)
T d1ohpa1           4 PEHMTAVVQRYVAALNAGDLDGIVALFADDA--TVENPVGSEPRSGTAAIREFYANSLKLPLA--VELT-QEVRAVANEA   78 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEE--EEESSTTSCCEESHHHHHHHHHHHTSSCCE--EEEC-SCCEEETTEE
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHhCCce--EEecCccCcccccHHHHHHHHHHHhhcCCc--eEEE-EEEEEecceE
Confidence            4568899999999999999999999999994  33444 566789999999999988875543  3333 3456677777


Q ss_pred             EEEEEeeeEeCCCc--eEEEEEEEE-eCCeEEEEEEec
Q 022429          247 WVTMKTYIDIDTGP--FNMTNVFEF-HNGQWYMVHHHS  281 (297)
Q Consensus       247 vv~~~e~v~~~~g~--lraT~VfrR-~dG~WrlvhhHa  281 (297)
                      ++........+|..  +....+|+. +||.  |++++.
T Consensus        79 ~~~~~~~~~~~g~~~~~~~~~~~~~d~dGk--I~~~~~  114 (125)
T d1ohpa1          79 AFAFIVSFEYQGRKTVVAPIDHFRFNGAGK--VVSMRA  114 (125)
T ss_dssp             EEEEEEEEEETTEEEEECCEEEEEECTTSC--EEEEEE
T ss_pred             EEEEEEEEecCCceEEEEEEEEEEECCCCe--EEEEEE
Confidence            76666555544433  567889999 6775  555543

>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622 {Shewanella baltica [TaxId: 62322]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Sbal0622-like
domain: Uncharacterized protein Sbal0622
species: Shewanella baltica [TaxId: 62322]

Probab=98.51  E-value=1.4e-06  Score=68.13  Aligned_cols=111  Identities=13%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCC-CHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFS-GYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~-Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      ...++|+++...|.+++..||.+.|.+++.+|..+.....+|.... +.+..........  .+........+.|.+.||
T Consensus         6 ~d~~aI~~li~~Y~~~~d~~D~~~l~~~F~~da~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~I~i~gd   83 (124)
T d3blza1           6 QEYHAIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVIDNVF--HPSPEAKAAIARIDIVGT   83 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHHHTC--CCCTTCEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeecCCCcceeccHHHHHHHHhhcC--CCCceeEEEEEEEEEcCC
Confidence            4567899999999999999999999999999975543444443222 2344444333222  223345566777899999


Q ss_pred             EEEEEEEeeeEeCCCceEEEE--EEEEeCCeEEEEEEec
Q 022429          245 IAWVTMKTYIDIDTGPFNMTN--VFEFHNGQWYMVHHHS  281 (297)
Q Consensus       245 vAvv~~~e~v~~~~g~lraT~--VfrR~dG~WrlvhhHa  281 (297)
                      .|.+....... .+  .++++  .|+|.||+|||++.--
T Consensus        84 ~A~~~~~~~~~-~~--~~y~D~~~lvK~dG~WkI~~r~~  119 (124)
T d3blza1          84 AASARIDTDDI-SG--FRFTDFFNLLKVEGKWTVVSKIY  119 (124)
T ss_dssp             EEEEEEEEEEE-TT--EEEEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEEeec-cC--CEEEEEEEEEEECCEEEEEEEEE
Confidence            98887653322 12  35566  6779999999997643

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Hypothetical protein YesE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=6e-07  Score=70.41  Aligned_cols=109  Identities=11%  Similarity=0.137  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-----CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-----GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL  242 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-----g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~  242 (297)
                      ++.-.++.++|++|+.++|.+++..+|++|...  ..|+     +..+.|++++++.|+.++...+...+++........
T Consensus         4 ~~~~~e~v~~~~~a~~~~D~~~~~~l~~eD~v~--~~p~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (139)
T d1s5aa_           4 FEKACETLRKFMAYMLEKDMKSWTELWDENAVF--EFPYAPEGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSAD   81 (139)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE--ECTTCCTTSCSEEESHHHHHHHHTTHHHHEEEEEECCCEEEEBSS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhCCceEE--EEccCCccccceecchHHHHHhhhhchhhcccceeeEEEeeeeec
Confidence            456678899999999999999999999999533  3332     235789999999888777655444455555444455


Q ss_pred             CCEEEEEEEeeeEe-CCC---ceEEEEEEEEeCCeEEEEEEe
Q 022429          243 TDIAWVTMKTYIDI-DTG---PFNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       243 gDvAvv~~~e~v~~-~~g---~lraT~VfrR~dG~WrlvhhH  280 (297)
                      ++.+++.+...... .+|   .+....+|+-+||+  |++++
T Consensus        82 ~~~v~~~~~~~~~~~~tG~~~~~~~~~~~~~~dGk--I~~~~  121 (139)
T d1s5aa_          82 SNTVIAEFQCDGHVIETGLPYRQSYISVIETRDGR--IVRYR  121 (139)
T ss_dssp             SSEEEEEEEEEEEETTTCCBCCCEEEEEEEEETTE--EEEEE
T ss_pred             CccceeEEEeecccccccccceeeEEEEEEEECCE--EEEEE
Confidence            66877777766553 233   36788899999995  44444

>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein BTHI0051
species: Burkholderia thailandensis [TaxId: 57975]

Probab=98.37  E-value=5.8e-06  Score=63.52  Aligned_cols=105  Identities=12%  Similarity=0.034  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCC----CCHHH-HHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELF----SGYNS-VIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l----~Gr~a-Vr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      -.++.++||+|++++|+++|.+++++|.  ....|++.+.    .|.++ ++..|+.++....  .+.++...+...||.
T Consensus         4 ~~~iv~~~~~A~~~~D~d~~~~~~a~D~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~   79 (130)
T d3ec9a1           4 PYQIVADHYAASDRHDPAAMMADIAPAI--EWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWD--GYTFKLDALHDAGDT   79 (130)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEE--EEEECTTSTTCEEECSHHHHHHHTHHHHHHHEE--EEEEEEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHhcCccc--EEEecCCceecccEEcchhHHhHHhhhhhcccc--cceeeeEEEEecCCe
Confidence            3578899999999999999999999994  4445544332    34444 5566666665432  355666667889998


Q ss_pred             EEEEEEeeeEe-CCC-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          246 AWVTMKTYIDI-DTG-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       246 Avv~~~e~v~~-~~g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +++.+..+... .+| .  ++...+|+-+||  ||+..+.
T Consensus        80 ~~~~~~~~~~~~~tG~~~~~~~~~~~~~~dG--kI~~~~~  117 (130)
T d3ec9a1          80 VIGVGRYSGTYRRTGKSFECRVAHVWRVDAG--KIVHFEQ  117 (130)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             eEEEEEEEEEEeCCCCEEEEEEEEEEEEECC--EEEEEEE
Confidence            88888777654 234 2  577889999998  7776664

>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalamycin biosynthesis protein SnoL
species: Streptomyces nogalater [TaxId: 38314]

Probab=98.34  E-value=6.3e-06  Score=64.70  Aligned_cols=108  Identities=12%  Similarity=0.104  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEE
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAW  247 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAv  247 (297)
                      +.+-++...+||+|++++|++.+.++|++|  ++...|++ ...|++++++.+...+...+...+++++  +...||.+.
T Consensus         2 ~~an~e~~~~~~~a~~~~D~~~~~~~~a~D--~~~~~~~~-~~~G~~~~~~~~~~~~~~~~d~~~~~~~--~~~~gd~v~   76 (138)
T d2gexa1           2 TTANKERCLEMVAAWNRWDVSGVVAHWAPD--VVHYDDED-KPVSAEEVVRRMNSAVEAFPDLRLDVRS--IVGEGDRVM   76 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEE--EEEECTTS-CEECHHHHHHHHHHHHHHCTTCEEEEEE--EEEETTEEE
T ss_pred             cHHHHHHHHHHHHHHHccCHHHHHHHhCcc--ccccCCCC-CccCHHHHHHHHHHHHHhccCceeeeee--eeeccccce
Confidence            456677888999999999999999999999  44455655 4569999999999888766555555555  677899777


Q ss_pred             EEEEeeeEeCC--------C-c--eEEEEEEEEeCCeEEEEEEec
Q 022429          248 VTMKTYIDIDT--------G-P--FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       248 v~~~e~v~~~~--------g-~--lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +.+.......+        | .  ++...+|+-.+++ ||+.+..
T Consensus        77 ~~~~~~~~~~g~~~~~~~tG~~v~~~~~~~~~~~d~G-kI~e~~~  120 (138)
T d2gexa1          77 LRITCSATHQGVFMGIAPTGRKVRWTYLEELRFSEAG-KVVEHWD  120 (138)
T ss_dssp             EEEEEEEECCSCBTTBCCCCCEEEEEEEEEEEECTTS-CEEEEEE
T ss_pred             eeecccccccccccccCCcccEEEEEEEEEEEEccCC-EEEEEEE
Confidence            76665554321        2 2  5677788875433 7766654

>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Hypothetical protein Rv0760c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.31  E-value=3.7e-06  Score=64.72  Aligned_cols=102  Identities=7%  Similarity=0.033  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC--------CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS--------GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV  241 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg--------g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v  241 (297)
                      ...++.++||+|++++|+++++++|++|.  +...|.        +....|++++++.|+.+..... ..+......+..
T Consensus         4 p~~~~~~~~~~a~~~~D~~~~~~l~a~D~--~~~~P~~~~~~~~~~~~~~G~~ai~~~~~~~~~~~~-~~~~~~~~~~~~   80 (132)
T d2a15a1           4 PALIASQSSWRCVQAHDREGWLALMADDV--VIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAANR-LTVTCEETFPSS   80 (132)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHTEEEEE--EEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTTT-CEEEEEEEEECS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHcCCCe--EEEccCCccccCccchheehHHHHHHhhhhhhcccc-ceEEEEEEEEec
Confidence            45678899999999999999999999994  334443        2456899999999988775442 344444444444


Q ss_pred             eCCEEEEEEEeeeEeCCC-c--eEEEEEEEEe-CCeE
Q 022429          242 LTDIAWVTMKTYIDIDTG-P--FNMTNVFEFH-NGQW  274 (297)
Q Consensus       242 ~gDvAvv~~~e~v~~~~g-~--lraT~VfrR~-dG~W  274 (297)
                      .++.+.+.........+| .  ++...+|+-. ||.=
T Consensus        81 ~~~~v~~~~~~~~~~~~G~~~~~~~v~~~~~~~dGkI  117 (132)
T d2a15a1          81 SPDEIAHILVLHSEFDGGFTSEVRGVFTYRVNKAGLI  117 (132)
T ss_dssp             STTEEEEEEEEEEEETTTEEEEEEEEEEEEECTTSCE
T ss_pred             CCcEEEEEEEEeeccccceeEEEEEEEEEEEcCCCeE
Confidence            556666655555444444 3  5667788874 7853

>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a soil-derived mobile gene cassette {uncultured organism [TaxId: 155900]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Hypothetical protein egc068 from a soil-derived mobile gene cassette
domain: Hypothetical protein egc068 from a soil-derived mobile gene cassette
species: uncultured organism [TaxId: 155900]

Probab=98.29  E-value=1.2e-05  Score=61.66  Aligned_cols=107  Identities=8%  Similarity=0.047  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCC----CCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC
Q 022429          169 RAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG----ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD  244 (297)
Q Consensus       169 ~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg----~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD  244 (297)
                      ++=.++.++||+|++++|++++..++++|.  +...|+.    ....|++++.+.|...+.... ..+.+....+...|+
T Consensus         4 ~~n~~vv~~~~~a~~~~D~~~~~~l~~~D~--~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   80 (131)
T d1tuha_           4 EQNAETVRRGYAAFNSGDMKTLTELFDENA--SWHTPGRSRIAGDHKGREAIFAQFGRYGGETG-GTFKAVLLHVLKSDD   80 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHEEEEE--EEEECSSSTTCEEEESHHHHHHHHHHHHHTTT-TCCEEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhcCCCE--EEEecCCCCcccccccHHHHHHHHHhhhhhcC-CCceEEEEEEEecCC
Confidence            444678899999999999999999999994  3344433    245799999999988886432 234455555666777


Q ss_pred             E-EEEEEEeeeEeCCCc--eEEEEEEEEeCCeEEEEEEe
Q 022429          245 I-AWVTMKTYIDIDTGP--FNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       245 v-Avv~~~e~v~~~~g~--lraT~VfrR~dG~WrlvhhH  280 (297)
                      . ++.........+|..  .+...+|+-+||  ||+..+
T Consensus        81 ~~v~~~~~~~~~~~G~~~~~~~~~v~~~~dG--kI~~~~  117 (131)
T d1tuha_          81 GRVIGIHRNTAERGGKRLDVGCCIVFEFKNG--RVIDGR  117 (131)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEEEEEEEETT--EEEEEE
T ss_pred             EEEEEEEEEEeecccccceeeEEEEEEEECC--EEEEEE
Confidence            4 444333333334443  567889999999  555544

>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase, AknH {Streptomyces galilaeus [TaxId: 33899]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Aklanonic acid methyl ester cyclase, AknH
species: Streptomyces galilaeus [TaxId: 33899]

Probab=98.27  E-value=7.8e-06  Score=64.87  Aligned_cols=107  Identities=9%  Similarity=0.017  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      -.++.++||+|+++||.+.+..++++|... ...+.+....|++++++.++.++...+. .+.++...+...||.+.+..
T Consensus         3 ~~a~vr~~~~a~~~gd~d~~~~~~~~D~~~-~~~~~~~~~~G~e~~~~~~~~~~~~fpd-~~~~~~~~~~~~gd~V~~~~   80 (140)
T d2f99a1           3 QIAAVRRMVEAYNTGKTDDVADYIHPEYMN-PGTLEFTSLRGPELFAINVAWVKKTFSE-EARLEEVGIEERADWVRARL   80 (140)
T ss_dssp             HHHHHHHHHHHHHHCCCTTGGGTEEEEEEC-GGGTTTCCCCHHHHHHHHHHHHHHHHCT-TCEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhcCceEEE-ecCCCCCCccCHHHHHHHHHHHhhcCCc-ceEEEEEEEecCCCEEEEEE
Confidence            457789999999999999999999999322 1122345688999999988776654322 36667777788899877766


Q ss_pred             EeeeEeC--------CCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          251 KTYIDID--------TGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       251 ~e~v~~~--------~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      ....+..        .|.   ++.+.+|+-+||  ||+.++.
T Consensus        81 ~~~gt~~g~~~g~~~tG~~v~~~~~~~~~~~dG--kI~e~~~  120 (140)
T d2f99a1          81 VLYGRHVGEMVGMAPTGRLFSGEQIHLLHFVDG--KIHHHRD  120 (140)
T ss_dssp             EEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             EEEecccccccccCCCCCeEEEEEEEeeEEECC--EEEEEEE
Confidence            6554321        122   588999999998  6666654

>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Putative hydroxylase AclR
species: Streptomyces galilaeus [TaxId: 33899]

Probab=98.20  E-value=1.8e-05  Score=62.72  Aligned_cols=104  Identities=12%  Similarity=0.190  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEE
Q 022429          170 AVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVT  249 (297)
Q Consensus       170 aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~  249 (297)
                      +-+++..+|++|+++||++.+.++|++|  ++...|+.+  .|.+++++.|+..++..+...++++  ++...||.+++.
T Consensus         4 ~~~~l~~~~~~A~n~~D~~~~~~~~a~d--~v~~~~~~~--~G~~~~~~~~~~~~~~~pd~~~~~~--~~~~~g~~v~~~   77 (144)
T d2geya1           4 ERKALCLEMVAAWNRWDLSGIIKHWSPD--IVHYSEDNE--VSSADMVKLMEGGLKAFPDLQLEVK--SIMAEEDRVALR   77 (144)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHTTEEEE--EEEEETTEE--ECHHHHHHHHHHHHHHSTTCEEEEE--EEEEETTEEEEE
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHhCcc--cccccCCcc--cCHHHHHHHHHHHHHhcccccceee--eEEeccccceeE
Confidence            4567889999999999999999999998  444445433  4999999999988876655455544  467789977776


Q ss_pred             EEeeeEeC--------CCc---eEEEEEEEEeCCeEEEEEEec
Q 022429          250 MKTYIDID--------TGP---FNMTNVFEFHNGQWYMVHHHS  281 (297)
Q Consensus       250 ~~e~v~~~--------~g~---lraT~VfrR~dG~WrlvhhHa  281 (297)
                      +..+....        .|+   ++...+|+-+||  ||+.+..
T Consensus        78 ~~~~gt~~g~~~~~~~tGk~v~~~~~~~~~~~dG--kI~e~~~  118 (144)
T d2geya1          78 ITVTATHQGEFMGVQPTGQRVSWHLVEELRFVDG--KVVEHWD  118 (144)
T ss_dssp             EEEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEE
T ss_pred             eeeeeecccccccccCCCCceeEEEEEEEEEECC--EEEEEEE
Confidence            66554421        122   577888988888  6666643

>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein PA3332
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.13  E-value=1.3e-05  Score=61.21  Aligned_cols=104  Identities=10%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-----CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE--EeCC
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-----GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR--VLTD  244 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-----g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~--v~gD  244 (297)
                      +++.++||++|++||++++.++|++|.  +...|.     +..+.|++++++.++..+...   .....++.+.  ..++
T Consensus         4 ~eiv~~~~~~~~~gD~~~~~~l~a~D~--v~~~p~~~~~~~~~~~G~~~i~~~~~~~~~~~---~~~~~~~~~~~~~d~~   78 (129)
T d1z1sa1           4 KEILVHSLRLLENGDARGWCDLFHPEG--VLEFPYAPPGWKTRFEGRETIWAHMRLFPEHL---TVRFTDVQFYETADPD   78 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTEEEEE--EEECSSCCTTSCCEEESHHHHHHTTTTGGGTE---EEEECCCEEECCSSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhcCce--EEEEecCCcccceEEeCHHHHHHHHHhhhhcc---ccccceeEEEEEecCC
Confidence            567889999999999999999999994  334442     235789999999766555433   3334444333  2566


Q ss_pred             EEEEEEEeeeEe--CCCc--eEEEEEEEEeCCeEEEEEEe
Q 022429          245 IAWVTMKTYIDI--DTGP--FNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       245 vAvv~~~e~v~~--~~g~--lraT~VfrR~dG~WrlvhhH  280 (297)
                      .+++.+......  +|.+  ++.-.+|+-+||...-...+
T Consensus        79 ~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~dGkI~~~~~y  118 (129)
T d1z1sa1          79 LAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDF  118 (129)
T ss_dssp             EEEEEEEEEEEETTTCCEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEeEEecCCeEEEEEEEEEEEEECCEEEEEEEE
Confidence            787777666543  2333  57888999999954444433

>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PA1314-like
domain: Hypothetical protein PA1314
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=3.6e-05  Score=61.62  Aligned_cols=93  Identities=13%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             hhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-EeCCEEEEEEEeeeEeCCCc--eEE
Q 022429          187 LPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-VLTDIAWVTMKTYIDIDTGP--FNM  263 (297)
Q Consensus       187 ldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-v~gDvAvv~~~e~v~~~~g~--lra  263 (297)
                      ++++++..+++  -++|+|+|. ..+++++.+.++......++..+.++++++. ..++.|++.+.|.=..+++.  -+.
T Consensus        27 l~~L~a~f~p~--FsMV~~~G~-~l~~~~~~~~f~~~~G~rpGl~I~id~~~~~~~~~~~~vv~Y~E~q~~~~~~~~R~S  103 (126)
T d1tp6a_          27 LDALMARFAED--FSMVTPHGV-VLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGATLAYREIQSDAAGRSERLS  103 (126)
T ss_dssp             HHHHHTTEEEE--EEEECTTSC-EEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhcCCC--cEEECCCCe-EcCHHHHHHHHHHhcCCCCccEEEEEEEEEEEEeCCeEEEEEEEEEecCCcceEEEE
Confidence            67788888777  678999885 5579999999888888778899999999877 56779999999875543432  478


Q ss_pred             EEEEEEe-CCeEEEEEEecC
Q 022429          264 TNVFEFH-NGQWYMVHHHSS  282 (297)
Q Consensus       264 T~VfrR~-dG~WrlvhhHaS  282 (297)
                      |.||++. +|+++-.|-|.+
T Consensus       104 Tavl~~~~~g~~~W~hLHET  123 (126)
T d1tp6a_         104 TVVLHRDDEGRLYWRHLQET  123 (126)
T ss_dssp             EEEEEECTTCCEEEEEEEEE
T ss_pred             EEEEEEcCCCCeEEeehhhh
Confidence            9999886 477777777764

>d1idpa_ d.17.4.1 (A:) Scytalone dehydratase {Fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Scytalone dehydratase
domain: Scytalone dehydratase
species: Fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.84  E-value=6e-05  Score=60.52  Aligned_cols=115  Identities=4%  Similarity=-0.053  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeec---CCCCCCCCHHHHHHHHHHHhccCC---CceeEEEEeE
Q 022429          165 YAATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH---ASGELFSGYNSVIQSWQIAFNWEQ---GVDFQVQDVR  238 (297)
Q Consensus       165 Y~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvh---Pgg~~l~Gr~aVr~sW~~if~~~~---~~~vei~dl~  238 (297)
                      .....+|+++..+|..++.++|.+.+.++|++|..+ ...   .+.....+.+.+++.|........   .....+....
T Consensus         5 l~Dr~aI~~l~~~Ya~~~D~~d~d~l~~lf~eda~~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~H~~~n~~   83 (147)
T d1idpa_           5 FSDYLGLMTCVYEWADSYDSKDWDRLRKVIAPTLRI-DYRSFLDKLWEAMPAEEFVGMVSSKQVLGDPTLRTQHFIGGTR   83 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEE-ECHHHHSCEEEEEEHHHHHHHHHSTTTTCCTTEEECCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHccCCHHHHHhhcCCceEE-eccccCCcccccchhhHHHHHhhchhhcccccceEEEEecCeE
Confidence            346778999999999999999999999999998432 221   122234577788777654322111   1235577788


Q ss_pred             EEEeCC-EEEEEEEeee---Ee--CCCc---------eEEEEEEEEeCCeEEEEEEe
Q 022429          239 ARVLTD-IAWVTMKTYI---DI--DTGP---------FNMTNVFEFHNGQWYMVHHH  280 (297)
Q Consensus       239 V~v~gD-vAvv~~~e~v---~~--~~g~---------lraT~VfrR~dG~WrlvhhH  280 (297)
                      |.+.|| .|.....-+.   ..  +++.         .+++.-|+|++|+|||.+..
T Consensus        84 I~~~~d~~A~g~~y~~a~h~~~~~~~~~~~~~~g~~~g~Y~d~y~k~dG~WkIs~~~  140 (147)
T d1idpa_          84 WEKVSEDEVIGYHQLRVPHQRYKDTTMKEVTMKGHAHSANLHWYKKIDGVWKFAGLK  140 (147)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEESSTTCCCEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCEEEEEEEEEEEEEEecCCCcceEEeeeeeEEEEEEEEEEeCCEEEEEEEE
Confidence            887554 6776554321   11  2221         36788999999999998754

>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Putative hydroxylase subunit Saro3860
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=97.77  E-value=0.00024  Score=56.30  Aligned_cols=117  Identities=10%  Similarity=0.046  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC----CC-----CCCCHHHHHHHHHHHhccCC----Ccee
Q 022429          166 AATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS----GE-----LFSGYNSVIQSWQIAFNWEQ----GVDF  232 (297)
Q Consensus       166 ~~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg----g~-----~l~Gr~aVr~sW~~if~~~~----~~~v  232 (297)
                      .+..+|+++..++..++..+|.+.+..+|++|..+.....+    +.     ...|++.+++....+.....    ....
T Consensus         5 ~ar~aI~~l~~~Ya~~lD~~~~~~~~~lFt~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~H   84 (157)
T d3ebya1           5 VAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGMLADRVVALRKANVFPEHFNRH   84 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEEGGGGGSSSCCEEEEESSHHHHHHHHHHHHHTC----CEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCeEEEccCCCCccccccceeEEechHHHHHHHHHHHhhcccCCCceeEE
Confidence            45688999999999999999999999999999654322111    11     12567788776666554321    1123


Q ss_pred             EEEEeEEE-EeCCEEEEEEEeeeEe--CCC-c-----eEEEEEEEEeCCeEEEEEEecC
Q 022429          233 QVQDVRAR-VLTDIAWVTMKTYIDI--DTG-P-----FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       233 ei~dl~V~-v~gDvAvv~~~e~v~~--~~g-~-----lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .+..+.|. ..+|.|.+.....+..  .++ .     -++...|+|++|+|||..+..-
T Consensus        85 ~i~n~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~Y~D~~~r~~g~Wri~~R~v~  143 (157)
T d3ebya1          85 LIGRAVITGVEGDQVSAEASYVVFQTRNDGETRIYNAGKYVDRFDLSGGTVRLKSRTCI  143 (157)
T ss_dssp             EECCCEEEEEETTEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred             EecceEEEecCCCEEEEEEEEEEEEeccCCCcEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            45556663 6777777765544432  222 1     3778899999999999998743

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Orange carotenoid protein, C-terminal domain
domain: Orange carotenoid protein, C-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

Probab=97.70  E-value=4.6e-05  Score=62.12  Aligned_cols=99  Identities=7%  Similarity=0.056  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEe--CCE-EEEE
Q 022429          173 NVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVL--TDI-AWVT  249 (297)
Q Consensus       173 aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~--gDv-Avv~  249 (297)
                      .+..+||+|++++|++++.++|++|..+  ..|.+.++.|+++|++-|+....+   +....+.......  |.. ..++
T Consensus        23 ~~V~~Y~~a~na~D~d~~~~lFa~Dav~--~~P~~~p~~G~eaI~~f~~~~~~~---~~~~p~~g~~~~~~~g~~~v~vt   97 (142)
T d1m98a2          23 STVLQYMDNLNANDFDNLISLFAEDGAL--QPPFQKPIVGKENTLRFFREECQN---LKLIPERGVSEPTEDGYTQIKVT   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHTTEEEEEEE--ECTTSCCEESHHHHHHHHHHHCTT---CEEEEEEEEEEECGGGCEEEEEE
T ss_pred             HHHHHHHHHHhcCCHHHHHHHcCCCeEE--eCCCCccccCHHHHHHHHHHhccc---ceecccceeeEeecCCcEEEEEE
Confidence            3678999999999999999999999543  567677899999999977755433   2333333223332  223 2333


Q ss_pred             EEeeeEeCCC--ceEEEEEEEE-eCCeEEE
Q 022429          250 MKTYIDIDTG--PFNMTNVFEF-HNGQWYM  276 (297)
Q Consensus       250 ~~e~v~~~~g--~lraT~VfrR-~dG~Wrl  276 (297)
                      |+-+....|.  .+++...|+- .+|+=.-
T Consensus        98 gkV~~~~~G~~~~vn~a~~F~ln~~GkI~~  127 (142)
T d1m98a2          98 GKVQTPWFGGNVGMNIAWRFLLNPENKVFF  127 (142)
T ss_dssp             EEEECTTTGGGCCEEEEEEEEECTTSCEEE
T ss_pred             EEEecCCCCcceeeeeEEEEEECCCCcEEE
Confidence            3322211232  3677788988 5665443

>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0744-like
domain: Uncharacterized protein Atu0744
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.69  E-value=0.00019  Score=54.77  Aligned_cols=98  Identities=10%  Similarity=0.132  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHhCC----hhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCE
Q 022429          170 AVVNVNAEFFNIIRERS----LPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDI  245 (297)
Q Consensus       170 aI~aa~~aFy~A~~agD----ldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDv  245 (297)
                      +..++.++|.+|+++.|    .+++.++|++|  +....|.+ ...|++++++.++.+++..++..+++.. .+...++.
T Consensus         3 ~~~~~~~~y~~awn~~d~~~~~~~l~~~~a~d--~~~~dP~~-~~~G~~ai~~~~~~~~~~~~~~~~~~~~-~v~~~~~~   78 (117)
T d3dxoa1           3 QHLTIAQTYLAAWNEEDNERRRHLVGQAWAEN--TRYVDPLM-QGEGQQGIAAMIEAARQKFPGYRFVLAG-TPDGHGNF   78 (117)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHHEEEE--EEEECSSC-EEEHHHHHHHHHHHHHHHSTTCEEEEEE-EEEEETTE
T ss_pred             chHHHHHHHHHHHhccCchhhHHHHHHHccCC--EEEECCCC-CcccHHHHHHHHHHHHHhCCCcEEEEEE-EEecCCCE
Confidence            35567789999999999    56699999999  45567766 5789999999999999877666666543 46677887


Q ss_pred             EEEEEEeeeEeCCCc--eEEEEEEEEe-CCe
Q 022429          246 AWVTMKTYIDIDTGP--FNMTNVFEFH-NGQ  273 (297)
Q Consensus       246 Avv~~~e~v~~~~g~--lraT~VfrR~-dG~  273 (297)
                      +....  .+..+++.  ++.+.+++-. +|+
T Consensus        79 ~~~~w--~~~~~~~~~~~~G~d~~~~~~dGk  107 (117)
T d3dxoa1          79 TRFSW--RLISPDGDDVAGGTDVVSLNTEGR  107 (117)
T ss_dssp             EEEEE--EEECTTSCEEEEEEEEEEECTTSS
T ss_pred             EEEEE--EEecCCCCeEEEEEEEEEECCCCC
Confidence            65443  34333443  5778888874 664

>d1sjwa_ d.17.4.9 (A:) Nogalonic acid methyl ester cyclase SnoaL {Streptomyces nogalater [TaxId: 38314]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalonic acid methyl ester cyclase SnoaL
species: Streptomyces nogalater [TaxId: 38314]

Probab=97.57  E-value=0.00049  Score=53.31  Aligned_cols=106  Identities=8%  Similarity=-0.007  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCC-CCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHAS-GELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPg-g~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      .++.++||+|+++||.+.+..++++|  ++...|+ .....|++.+++.++.+....+. ....+...+...||.+++.+
T Consensus         4 ~eiv~~~~~a~~~gd~~~~~~~~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gd~v~~~~   80 (142)
T d1sjwa_           4 TEIVRRMVSAFNTGRTDDVDEYIHPD--YLNPATLEHGIHTGPKAFAQLVGWVRATFSE-EARLEEVRIEERGPWVKAYL   80 (142)
T ss_dssp             HHHHHHHHHHHHHCCCTTGGGTEEEE--EECGGGGGGTCCSHHHHHHHHHHHHHHHHCT-TCEEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhh--EEEeccccccccchhHHHHHHHHHHHhhhcc-cccceEEEEEecCCEEEEEE
Confidence            45678999999999999999999998  3333343 23566788888866555543322 23445555667889776666


Q ss_pred             EeeeEeC--------CC-c--eEEEEEEEEeCCeEEEEEEecC
Q 022429          251 KTYIDID--------TG-P--FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       251 ~e~v~~~--------~g-~--lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      .......        .| +  +....+|+-+||  ||+.++..
T Consensus        81 ~~~gt~~g~~~~~~~tGk~~~~~~~~~~~~~dG--kI~e~~~~  121 (142)
T d1sjwa_          81 VLYGRHVGRLVGMPPTDRRFSGEQVHLMRIVDG--KIRDHRDW  121 (142)
T ss_dssp             EEEEECCSCBTTBCCCCCEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred             EEEEcCcccceecCCCcceEEEEEEEEEEEECC--EEEEEEEe
Confidence            5444321        12 2  578889999999  57777654

>d3e99a1 d.17.4.4 (A:1-163) Benzoate 1,2-dioxygenase beta subunit BenB {Burkholderia mallei [TaxId: 13373]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Benzoate 1,2-dioxygenase beta subunit BenB
species: Burkholderia mallei [TaxId: 13373]

Probab=96.95  E-value=0.0057  Score=47.96  Aligned_cols=114  Identities=5%  Similarity=-0.107  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHH---------------HHHHHHHHh-----ccC
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNS---------------VIQSWQIAF-----NWE  227 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~a---------------Vr~sW~~if-----~~~  227 (297)
                      ..+|+++..++.+++..+|.+.+..+|++|.... +.+.+....+...               +...-..+.     ...
T Consensus         6 ~~eI~~ll~rya~~lD~~d~d~~~~lFteDa~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~~~~~~~   84 (163)
T d3e99a1           6 LADIQAFLYRESRLLDDKAWDAWLDCYRADAVFW-MPSWDDADALVTDPQREISLIYYPNRQGLEDRVFRIKTERSSATV   84 (163)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE-EECCCC-----------CEEEEESSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHcccCHHHHHHhcCCceEEE-ecCCCcccccccchhhhhHHHHhhhhhhHHHHHHHHhccceeccc
Confidence            4679999999999999999999999999996432 2222222222111               111111111     111


Q ss_pred             CC--ceeEEEEeEEEE-eCCEEEEEEEeeeE-eCCCc-----eEEEEEEEEeCCeEEEEEEecC
Q 022429          228 QG--VDFQVQDVRARV-LTDIAWVTMKTYID-IDTGP-----FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       228 ~~--~~vei~dl~V~v-~gDvAvv~~~e~v~-~~~g~-----lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      +.  ....+..+.|.. .++.+.......+. ..++.     -++...|+|++|+|||.+.+-.
T Consensus        85 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Y~D~~~r~~g~WrI~~R~v~  148 (163)
T d3e99a1          85 PDTRTSHNIANVERESADGDVHTVRFNWHTLSYRYKTVSSYFGMSRYAIDFSGDAPKIVSKYVV  148 (163)
T ss_dssp             SCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred             ccceEEEEecccccccCCCCeEEEEEEEEEEEecCCCeeEEEEEEEEEEEEECCEEEEEEEEEE
Confidence            11  123344444443 34444444333332 22221     3788999999999999998754

>d2b1xb1 d.17.4.4 (B:513-679) Naphthalene 1,2-dioxygenase beta subunit {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Naphthalene 1,2-dioxygenase beta subunit
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=96.65  E-value=0.049  Score=43.38  Aligned_cols=116  Identities=10%  Similarity=-0.078  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeec---C-CCCC----------CCCHHHHHHHHHHHhcc------
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIH---A-SGEL----------FSGYNSVIQSWQIAFNW------  226 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvh---P-gg~~----------l~Gr~aVr~sW~~if~~------  226 (297)
                      ...+|.+...++..++..||.+.+..+|++|......-   + ++..          ..++..+...-+.+...      
T Consensus         6 ~~~EI~~~l~r~a~lLD~~~~d~w~~lFt~Da~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~   85 (167)
T d2b1xb1           6 TVREITEWLYMEAELLDAGKYREWLALVTEDLSYVVPIRVTREREAVTDVVEGMTHMDDDADSMEMRVLRLETEYAWAED   85 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEEECCCCTTSSCCEEEEEEEEEECHHHHHHHHHHHTSSCCGGGS
T ss_pred             HHHHHHHHHHHHHHHhcCcCHHHHHHhccCCEEEEecccccccccccCChhhhhhhcccchHHHHHHHHHhhcccccccC
Confidence            45689999999999999999999999999996432211   0 1111          12345555544443321      


Q ss_pred             C-CCceeEEEEeEEEEeC--CEEEEEEEeeeEe---CCCc-----eEEEEEEEEeCCeEEEEEEecC
Q 022429          227 E-QGVDFQVQDVRARVLT--DIAWVTMKTYIDI---DTGP-----FNMTNVFEFHNGQWYMVHHHSS  282 (297)
Q Consensus       227 ~-~~~~vei~dl~V~v~g--DvAvv~~~e~v~~---~~g~-----lraT~VfrR~dG~WrlvhhHaS  282 (297)
                      + +.....+..+.|...+  +.+-+.+...+..   +++.     -++...|+|++|+|||....-.
T Consensus        86 p~~~~rH~vsn~~i~~~~~~~~~~v~s~~~~~~~~~~~~~~~~~~G~Y~D~l~r~~ggwri~~R~v~  152 (167)
T d2b1xb1          86 PPSRSRHFVTNVRVATGDSEDEFKVTSNLLLYRTRGDVATYDVLSGERTDVLRRAGDSFLMAKRVVL  152 (167)
T ss_dssp             SCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEECTTCSCCEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CccEEEEeccceEEEEcCCCCeEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEEEeCCEEEEEEEEEE
Confidence            1 1234567787787754  3566555544432   2222     2677899999999999988754

>d1ulib_ d.17.4.4 (B:) Biphenyl dioxygenase small subunit BphA2 {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Biphenyl dioxygenase small subunit BphA2
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=95.38  E-value=0.3  Score=38.97  Aligned_cols=113  Identities=4%  Similarity=-0.082  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCC-C------------------CCCHHHHHHHHHHHhc---
Q 022429          168 TRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGE-L------------------FSGYNSVIQSWQIAFN---  225 (297)
Q Consensus       168 t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~-~------------------l~Gr~aVr~sW~~if~---  225 (297)
                      ..+|.+..-++.+++..++.+...++|++|...  ..|+.+ .                  ..++..+.+.-..+..   
T Consensus        13 ~~eI~~~l~r~A~~LD~~~~d~w~~lFteD~~y--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~rv~~l~~~~~   90 (177)
T d1ulib_          13 QHEIEQFYYWEAKLLNDRRFQEWFDLLAEDIHY--FMPIRTTRIMRETAQEYSGAREYAHFDDNAQMMRGRLRKITSDVS   90 (177)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEE--EEECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHhhcCCEEE--EecCCCCcccccccccccccccceeeeCcHHHHHHHHHHHhcccc
Confidence            357889999999999999999999999999533  222211 1                  1234555555444432   


Q ss_pred             c---CCC-ceeEEEEeEEEEe--CCEEEEEEEeeeEe--CCCc-----eEEEEEEEEe--CCeEEEEEEecC
Q 022429          226 W---EQG-VDFQVQDVRARVL--TDIAWVTMKTYIDI--DTGP-----FNMTNVFEFH--NGQWYMVHHHSS  282 (297)
Q Consensus       226 ~---~~~-~~vei~dl~V~v~--gDvAvv~~~e~v~~--~~g~-----lraT~VfrR~--dG~WrlvhhHaS  282 (297)
                      +   +.. ...-+..+.|...  ++.+.+.....+..  .++.     -++...|+|.  +|+|||....-.
T Consensus        91 ~~~~~~~~trH~vsnv~i~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~G~Y~D~l~r~~~dggwri~~R~v~  162 (177)
T d1ulib_          91 WSENPASRTRHVISNVMIVDGEKPGEYHVSSVFIVYRNRLERQLDIFAGERKDILRRTGSEAGFELAKRTIL  162 (177)
T ss_dssp             GGGSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECSSTTCEEEEEEEEE
T ss_pred             cccCCCceeEEeecccEEeccCCCCeEEEEEEEEEEEecCCCceEEEEEEEEEEEEEeCCCCeEEEEEEEEE
Confidence            1   111 1244566666653  34555555544432  2331     3778899997  579999887654

>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Penicillin binding protein 2a (PBP2A), N-terminal domain
domain: Penicillin binding protein 2a (PBP2A), N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.95  E-value=0.062  Score=41.17  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEE-EeCCEEEEEEEe
Q 022429          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRAR-VLTDIAWVTMKT  252 (297)
Q Consensus       174 a~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~-v~gDvAvv~~~e  252 (297)
                      ..+.|+++++.+|.+.|-...+...         ..-.+.+...+..+.++++-..-.+.++...+. ..++.+.+...-
T Consensus         3 ~~~~y~~~~~~~~y~~mY~~ls~~s---------k~~~s~~ef~~R~~~Iyegi~a~~l~v~~~~v~~~~~~~~~v~y~~   73 (112)
T d1vqqa1           3 EINNTIDAIEDKNFKQVYKDSSYIS---------KSDNGEVEMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQY   73 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTBCHHH---------HHHHCHHHHHTHHHHHHHHHTCCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             hHHHHHHHHhhccHHHHHHHhCHHH---------HHhcCHHHHHHHHHHHHcccCccceEEEeeeeeecCCCeEEEEEEE
Confidence            4678999999999999987654331         123357777788888886544345667777774 678898888886


Q ss_pred             eeEeCCCc--eEEEEEEEEeCCeEEEE
Q 022429          253 YIDIDTGP--FNMTNVFEFHNGQWYMV  277 (297)
Q Consensus       253 ~v~~~~g~--lraT~VfrR~dG~Wrlv  277 (297)
                      .+....|+  +-.+..++|++|+|+|.
T Consensus        74 ~m~T~aG~~~~~~~~~l~ke~~~Wkv~  100 (112)
T d1vqqa1          74 KIKTNYGNIDRNVQFNFVKEDGMWKLD  100 (112)
T ss_dssp             EEEETTEEEEEEEEEEEEECSSSEEEC
T ss_pred             EEEcCCcceeEeeEEEEEEeCCCEEEE
Confidence            66654454  45577889999999975

>d1wqlb1 d.17.4.4 (B:5-186) Small subunit of cumene dioxygenase CumA2 {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ring hydroxylating beta subunit
domain: Small subunit of cumene dioxygenase CumA2
species: Pseudomonas fluorescens [TaxId: 294]

Probab=94.89  E-value=0.3  Score=39.34  Aligned_cols=114  Identities=8%  Similarity=-0.095  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCC------------------CCCHHHHHHHHHHHhcc--
Q 022429          167 ATRAVVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGEL------------------FSGYNSVIQSWQIAFNW--  226 (297)
Q Consensus       167 ~t~aI~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~------------------l~Gr~aVr~sW~~if~~--  226 (297)
                      -..+|++..-...+++..+|.+...++|++|...- +.+....                  ..++..++..-..+...  
T Consensus        17 l~~eIe~fl~r~A~lLD~~~~d~w~~lFt~Da~y~-vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Rv~~l~~~~~   95 (182)
T d1wqlb1          17 LQNAVEQFYYREAQLLDYQNYEAWLALLTQDIQYW-MPIRTTHTSRNKAMEYVPPGGNAHFDETYESMRARIRARVSGLN   95 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHTTBCTTCCEE-EECBCCCCGGGGGGSBCCTTSCEEEEECHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEE-ecCCCCccccchhhcccCcccceEEccchHHHHHHHHHHhcccc
Confidence            34568888888899999999999999999996432 2221111                  12455555554444431  


Q ss_pred             ----C-CCceeEEEEeEEEEeCC--EEEEEEEeeeE-e-CCCc-----eEEEEEEEEeCC--eEEEEEEec
Q 022429          227 ----E-QGVDFQVQDVRARVLTD--IAWVTMKTYID-I-DTGP-----FNMTNVFEFHNG--QWYMVHHHS  281 (297)
Q Consensus       227 ----~-~~~~vei~dl~V~v~gD--vAvv~~~e~v~-~-~~g~-----lraT~VfrR~dG--~WrlvhhHa  281 (297)
                          + .....-+..+.|.+.+|  .+.+.+...+. . .++.     -.+...++|.+|  +|||....-
T Consensus        96 ~~~~p~~~trH~vsn~~i~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~g~y~d~~~r~~dG~~wri~~R~v  166 (182)
T d1wqlb1          96 WTEDPPSRSRHIVSNVIVRETESAGTLEVSSAFLCYRNRLERMTDIYVGERRDILLRVSDGLGFKIAKRTI  166 (182)
T ss_dssp             GGGSSCCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEECSSTTSEEEEEEEE
T ss_pred             cccCCCCceEEEeeeeEEEEcCCCceEEEEEEEEEEEecCCCceEEEEEEEEEEEEEeCCCCeEEEEEEEE
Confidence                1 12245677777887655  44444433332 1 2332     256667788654  599987654

>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.49  Score=35.77  Aligned_cols=99  Identities=12%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEE-eCC---EEEEEE
Q 022429          175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARV-LTD---IAWVTM  250 (297)
Q Consensus       175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v-~gD---vAvv~~  250 (297)
                      ...||+.|.+ +.+.|..+|.++.  ...+. |....|.++|.+.+...-  .....+.+..++..- .++   +..|+|
T Consensus        10 v~~YY~~l~~-~r~~L~~~Y~~~s--~l~~~-g~~~~G~~~I~~~l~~lp--~~~~~~~i~~~D~Qp~~~~~~ili~V~G   83 (121)
T d1gy7a_          10 TQFYYNQFDT-DRSQLGNLYRNES--MLTFE-TSQLQGAKDIVEKLVSLP--FQKVQHRITTLDAQPASPYGDVLVMITG   83 (121)
T ss_dssp             HHHHHHHHHH-HGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHSC--CSCEEEEEEEEEEEESSTTSCEEEEEEE
T ss_pred             HHHHHHHHhc-CHHHHHHHcCCCc--EEEEC-CeEecCHHHHHHHHHhCC--CcccEEEEeeEeeEEccCCCeEEEEEEE
Confidence            4678999986 8899999999884  34675 557889999998765331  124467788888874 323   345555


Q ss_pred             EeeeEeCCCc--eEEEEEEEEeCCeEEEEEE
Q 022429          251 KTYIDIDTGP--FNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       251 ~e~v~~~~g~--lraT~VfrR~dG~Wrlvhh  279 (297)
                      .-....+..+  +.=|-++...+|+|.|...
T Consensus        84 ~~~~~~~~~~~~F~qtF~L~~~~~~y~I~nD  114 (121)
T d1gy7a_          84 DLLIDEEQNPQRFSQVFHLIPDGNSYYVFND  114 (121)
T ss_dssp             EEEETTCSSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCCcceeEEEEEEEeeCCEEEEEEE
Confidence            5443211223  3445566668999998753

>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Cryptosporidium parvum [TaxId: 5807]

Probab=93.89  E-value=0.63  Score=34.80  Aligned_cols=96  Identities=20%  Similarity=0.393  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC---EEEEEEE
Q 022429          175 NAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD---IAWVTMK  251 (297)
Q Consensus       175 ~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD---vAvv~~~  251 (297)
                      ...||..|.. +.+.|..+|.++.  ...++ +....|.++|.+.+...-  ....++.+..++.....+   +-.|+|.
T Consensus         9 v~~YY~~~~~-~r~~l~~~Y~~~s--~l~~~-g~~~~G~~~I~~~l~~l~--~~~~~~~i~~~D~Qp~~~~~ili~V~G~   82 (117)
T d1zo2a1           9 VQHYYQTFQT-NRPALGGLYGPQS--MLTWE-DTQFQGQANIVNKFNSLN--FQRVQFEITRVDCQPSPNNGSIVFVTGD   82 (117)
T ss_dssp             HHHHHHHHHH-CGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHHC--CSCEEEEEEEEEEEECTBSSEEEEEEEE
T ss_pred             HHHHHHHHhc-CHHHHHhhccCCc--EEEEC-CCcccCHHHHHHHHHhCC--CccceEEEeeEEEEEcCCCCEEEEEEEE
Confidence            4578999987 8899999999883  44676 457899999999776532  124577788888886433   3444554


Q ss_pred             eeeEeCCC-ceEEEEEEE--E-eCCeEEEEE
Q 022429          252 TYIDIDTG-PFNMTNVFE--F-HNGQWYMVH  278 (297)
Q Consensus       252 e~v~~~~g-~lraT~Vfr--R-~dG~Wrlvh  278 (297)
                      -..  +++ +...++.|.  + .+|+|.+..
T Consensus        83 ~~~--~~~~~~~F~q~F~L~~~~~~~~~I~n  111 (117)
T d1zo2a1          83 VRI--DDGQPLKFSQVFNLMPSGNGGFMIFN  111 (117)
T ss_dssp             EEE--TTCCCEEEEEEEEEEECSSSCEEEEE
T ss_pred             EEe--CCCCcceeEEEEEEeEcCCCCEEEEe
Confidence            443  344 355666654  3 367898765

>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SEC-C associated NTF2-like domain
domain: Hypothetical protein Psyc2064
species: Psychrobacter arcticus [TaxId: 334543]

Probab=93.65  E-value=0.094  Score=40.22  Aligned_cols=94  Identities=14%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCCEEEEEE
Q 022429          171 VVNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTDIAWVTM  250 (297)
Q Consensus       171 I~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gDvAvv~~  250 (297)
                      .+++..+.|.||..|+.+-+.+-|.++-     .+    ....+.+++ |..-..|.   .++|.+..-...++.+.|..
T Consensus         7 aE~LMRSRYSAy~~~~~dYL~~T~hp~~-----r~----~~~~~~~~~-~~~~~~W~---~LeIl~~~~~~~d~~g~VeF   73 (113)
T d2i9wa1           7 AEHLMRTRYSAFVLVKPEYIVKTTLPAQ-----QD----LLDIKAIEN-WAKETDWA---GLEVVAHTPKLSKRHAQVEF   73 (113)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHTBCHHH-----HT----TCCHHHHHH-HHHHSEEE---EEEEEEEETTSSSSEEEEEE
T ss_pred             HHHHHHhhhHhhhcCCccchhhcCCccc-----CC----ccChHHHHh-hcccCccc---eeEEEEecCCCCCeEEEEEE
Confidence            3568899999999999999999886651     22    223555553 43333332   33333321112344899988


Q ss_pred             EeeeEeCCC--ceEEEEEEEE------eCCeEEEE
Q 022429          251 KTYIDIDTG--PFNMTNVFEF------HNGQWYMV  277 (297)
Q Consensus       251 ~e~v~~~~g--~lraT~VfrR------~dG~Wrlv  277 (297)
                      ..+...+++  .++=..-|+|      +||+|+.+
T Consensus        74 ~A~y~~~~~~~~~hE~S~F~r~~~~~~edG~W~Y~  108 (113)
T d2i9wa1          74 KAYFKTPDGLQAHHELSTFVKIKNKANSDASWYFL  108 (113)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEECSSSSCEEEEEC
T ss_pred             EEEEEeCCCceeEEEeeEEEeccCCCCcCCeEEEE
Confidence            887765443  3566889999      58999865

>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.25  E-value=0.86  Score=34.60  Aligned_cols=98  Identities=12%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC---EEEEEE
Q 022429          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD---IAWVTM  250 (297)
Q Consensus       174 a~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD---vAvv~~  250 (297)
                      -.+.||..|.. +.+.|..+|.++.  ...++ |....|.++|.+.+...-.  ....+.+..+++...++   +..|+|
T Consensus        12 Fv~~YY~~l~~-~r~~L~~~Y~~~S--~l~~~-g~~~~G~~~I~~~l~~lp~--~~~~~~i~~~D~Q~~~~~~ili~V~G   85 (125)
T d1gy6a_          12 FIQHYYQLFDN-DRTQLGAIYIDAS--CLTWE-GQQFQGKAAIVEKLSSLPF--QKIQHSITAQDHQPTPDSCIISMVVG   85 (125)
T ss_dssp             HHHHHHHHHHH-HGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHCSC--SCEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHHHhC-CHHHHHHHcCCCc--EEEEC-CccccCHHHHHHHHHcCCC--cccEEEEeEEEEEEcCCCCEEEEEEE
Confidence            34678999987 7899999998884  44676 4578999999987654321  13467788888886655   233444


Q ss_pred             EeeeEeCCC-c--eEEEEEEEEeCCeEEEEEE
Q 022429          251 KTYIDIDTG-P--FNMTNVFEFHNGQWYMVHH  279 (297)
Q Consensus       251 ~e~v~~~~g-~--lraT~VfrR~dG~Wrlvhh  279 (297)
                      .-.  .+++ +  +.=|-++...+|+|.|...
T Consensus        86 ~~~--~~~~~~~~F~qtF~L~~~~~~y~I~ND  115 (125)
T d1gy6a_          86 QLK--ADEDPIMGFHQMFLLKNINDAWVCTND  115 (125)
T ss_dssp             EEE--ETTSCCEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEE--ECCCCCcceEEEEEEeccCCEEEEEee
Confidence            433  3333 2  3334456668999998653

>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: UBP3-associated protein BRE5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=1.8  Score=32.70  Aligned_cols=103  Identities=7%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhCChhhhhhhhccCCceeeecCCC--------------CCCCCHHHHHHHHHHHhccCCCceeEEEEeEE
Q 022429          174 VNAEFFNIIRERSLPAMSRFWLNADYVKCIHASG--------------ELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRA  239 (297)
Q Consensus       174 a~~aFy~A~~agDldam~alWaddd~V~cvhPgg--------------~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V  239 (297)
                      =...||..|.. +.+.|..+|.++..+  .+++.              ....|.++|.+.+.............+..+++
T Consensus        10 Fv~~YY~~ld~-~r~~L~~~Y~~~s~~--s~~~~~~~~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~~~i~~~d~   86 (139)
T d2qiya1          10 FLQNYYERMRT-DPSKLAYFYASTAEL--THTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDF   86 (139)
T ss_dssp             HHHHHHHHHHH-CGGGGGGGEEEEEEE--EEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHhc-CHHHHHHhhcCCcEE--EEcCCCcccccccchhhhhhccccHHHHHHHHHhcCccccceEEeeeeeee
Confidence            34689999997 899999999988544  33321              23469999999887665433345666777777


Q ss_pred             EEe---CCEEEEEEEeeeEeCCCc-eEEEEEEEE--e-C-CeEEEEEE
Q 022429          240 RVL---TDIAWVTMKTYIDIDTGP-FNMTNVFEF--H-N-GQWYMVHH  279 (297)
Q Consensus       240 ~v~---gDvAvv~~~e~v~~~~g~-lraT~VfrR--~-d-G~Wrlvhh  279 (297)
                      ...   ++..++...-.+..++.. ...++.|.-  . + |.|+|...
T Consensus        87 ~~~~~~~~~i~v~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~~~I~nD  134 (139)
T d2qiya1          87 QYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITND  134 (139)
T ss_dssp             EEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEE
T ss_pred             eecccCCCEEEEEEeeEEecCCCCccceEEEEEEEecCCCCEEEEEee
Confidence            653   343333333334333443 345665555  2 2 46998753

>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-related export protein 1 (p15)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=7.5  Score=29.55  Aligned_cols=100  Identities=14%  Similarity=0.316  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhCChhhhhhhhccCCceeeecCCCCCCCCHHHHHHHHHHHhccCCCceeEEEEeEEEEeCC-------
Q 022429          172 VNVNAEFFNIIRERSLPAMSRFWLNADYVKCIHASGELFSGYNSVIQSWQIAFNWEQGVDFQVQDVRARVLTD-------  244 (297)
Q Consensus       172 ~aa~~aFy~A~~agDldam~alWaddd~V~cvhPgg~~l~Gr~aVr~sW~~if~~~~~~~vei~dl~V~v~gD-------  244 (297)
                      .+-.+.||..|.. +.+.|..+|.++.  ..++. |..+.|.++|.+.+...    +...+++..+++....+       
T Consensus        17 ~~FV~~YY~~l~~-~r~~L~~fY~~~S--~l~~~-g~~~~G~~~I~~~l~~l----p~~~~~i~~~D~q~~~~~~~~~~~   88 (139)
T d1jkga_          17 EEFVNVYYTTMDK-RRRLLSRLYMGTA--TLVWN-GNAVSGQESLSEFFEML----PSSEFQISVVDCQPVHDEATPSQT   88 (139)
T ss_dssp             HHHHHHHHHHHHH-CGGGGGGGEEEEE--EEEET-TEEEESHHHHHHHHHHS----CCEEEEEEEEEEEECCTTTSTTCC
T ss_pred             HHHHHHHHHHHHh-CHHHHHHHhCCCc--eEEEC-CeeccCHHHHHHHHHhC----CCceeEEEEEEEEEcCcccccCCC
Confidence            3445689999986 8999999999884  44675 56789999999976542    23356666777765322       


Q ss_pred             EEEEEEEeeeEeCCC-ceEEEEEEEE------eCCeEEEEEE
Q 022429          245 IAWVTMKTYIDIDTG-PFNMTNVFEF------HNGQWYMVHH  279 (297)
Q Consensus       245 vAvv~~~e~v~~~~g-~lraT~VfrR------~dG~Wrlvhh  279 (297)
                      ..++...-.+..++. ....++.|..      .+|.|.+...
T Consensus        89 ~ilI~V~G~v~~~~~~~r~F~QtF~L~~~~~~~~~~y~I~nD  130 (139)
T d1jkga_          89 TVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASD  130 (139)
T ss_dssp             EEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEE
T ss_pred             eEEEEEEEEEEcCCCCcceeEEEEEEEecCCCCCCcEEEEee
Confidence            222222223333343 3445555543      2566988653