Citrus Sinensis ID: 022496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MMLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Secondary Structure (PSIPRED)
cccHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccHHEEEcccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccHHcHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccEEccccEEEHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHccHHHHHHHHHHccccccccccEEEEEcccccccccccHHHHcccccccccccEEEEEEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHcccccHcccccccccccccccHHHHHHHHHcccccEccEcccccEEEEEEEccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHcccccEEccHHHHHHccHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHEHHHEEcccccccc
Coil and Loop (DISEMBL)
mmlrasqlaspVLCAITQsliptlnlssssslsifqkpasfasfykslnpasnsnsfhihiisrsftspkaasfssgtegsspgggdrEILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAvehsicpskgeggmlgwvrkgqlvpefeevafttplnkvaRCKTKFGWHLLQVLSEREASLlqdiqpdelhkkmqdpnfhkeaqlidvrepeevalsslpgfqvlplrqfgswgpditvkfdpqkdtyvmchhgMRSLQVAQWLQTQGFRrvfnvsggihayatkvdpsipty
Flexible Loop (DISEMBL)
mmlrasqlASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAAsfssgtegsspggGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSicpskgeggmlGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGgihayatkvdpsipty
Low Complexity Region (SEG)
MMLRASQLASPVLCAITQsliptlnlssssslsIFQKPASFASFYKSLNPAsnsnsfhihiisrsftsPKAAsfssgtegsspgggDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Disordered region (IsUnstruct)
**********PVLCAITQSLIPTLNL*******IFQ**ASFASFYK**********FHIHII***************************ILVQHLLVKEDDLNLLS***************LAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSER************************************VALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK********
Disordered Region (DISOPRED)
*************CAITQSLIPTL**************ASFASFYKSLNPASNSNSFHIHIISRSFTSPKA*****************EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLA**************LGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ***********FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Disordered Region (DISEMBL)
********ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFT*****************GGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Disordered Region (DISPRO)
MMLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAAS***********GGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLxxxxxxxxxxxxxxxxxxxxxHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q93WI0	299	Rhodanese-like/PpiC domai	yes	no	0.695	0.688	0.660	2e-80
Q0VMV4	435	Chaperone SurA OS=Alcaniv	yes	no	0.412	0.280	0.328	3e-12
P0A265	93	Peptidyl-prolyl cis-trans	yes	no	0.283	0.903	0.431	1e-11
P0A266	93	Peptidyl-prolyl cis-trans	N/A	no	0.283	0.903	0.431	1e-11
P0A9L5	93	Peptidyl-prolyl cis-trans	N/A	no	0.273	0.870	0.447	1e-11
P0A9L6	93	Peptidyl-prolyl cis-trans	yes	no	0.273	0.870	0.447	1e-11
P0A9L7	93	Peptidyl-prolyl cis-trans	N/A	no	0.273	0.870	0.447	1e-11
Q60B78	454	Chaperone SurA OS=Methylo	no	no	0.368	0.240	0.401	6e-11
Q3JAF1	426	Chaperone SurA OS=Nitroso	yes	no	0.412	0.286	0.313	7e-11
Q2S9C1	434	Chaperone SurA OS=Hahella	yes	no	0.459	0.313	0.320	7e-11

>sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 138/209 (66%), Positives = 172/209 (82%), Gaps = 3/209 (1%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 147
           REILVQHLLVK +D+ L +ELQ++   G E++SDLA E+SICPSK +GG+LGWV+ GQ+V
Sbjct: 94  REILVQHLLVKNNDVELFAELQKKFLDG-EEMSDLAAEYSICPSKKDGGILGWVKLGQMV 152

Query: 148 PEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 207
           PEFEE AF   LN+V RC+T+FG HLLQVLSERE   ++DIQ +ELH KMQDP F  EAQ
Sbjct: 153 PEFEEAAFKAELNQVVRCRTQFGLHLLQVLSEREP--VKDIQVEELHSKMQDPVFMDEAQ 210

Query: 208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267
           LIDVREP E+ ++SLPGF+V PLRQFG+W PDIT K +P+KDT+V+C  G RS+QVA WL
Sbjct: 211 LIDVREPNEIEIASLPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWL 270

Query: 268 QTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           Q+QGF+ V+N++GGI AY+ KVDPSIPTY
Sbjct: 271 QSQGFKSVYNITGGIQAYSLKVDPSIPTY 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q0VMV4|SURA_ALCBS Chaperone SurA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=surA PE=3 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 12/134 (8%)

Query: 84  GGGDREIL---VQHLLVKEDDLNLLSELQRR-------VSQGREDLSDLAVEHSICP-SK 132
           GG ++ +    V+H+L+K D L    + Q+R       V+ G+    + A E S  P S 
Sbjct: 284 GGAEKVVTQYHVRHVLIKADALTSAEQAQQRAIRLHDEVAAGKRQFKETAAEFSDDPGSA 343

Query: 133 GEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARC-KTKFGWHLLQVLSEREASLLQDIQPD 191
             GG LGWV KG++VPEFE+V   TP+ +++   +++FGWH L+V   R+A +  + +  
Sbjct: 344 RNGGELGWVNKGEMVPEFEQVMLNTPVGELSPVFESQFGWHFLRVDDIRDADMSTEFRRM 403

Query: 192 ELHKKMQDPNFHKE 205
           +  + +Q   F +E
Sbjct: 404 QATQALQKRRFEEE 417

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) (taxid: 393595)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A265|PPIC_SALTY Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ppiC PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS  +GG LG  R+GQ+VP F++V
Sbjct: 9   HILVKEEKLAL--DLLEQIKNG-GDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKV 65

Query: 154 AFTTP-LNKVARCKTKFGWHLLQVLSER 180
            F+ P L       T+FG+H+++VL  +
Sbjct: 66  VFSCPVLEPTGPLHTQFGYHIIKVLYRK 93

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A266|PPIC_SALTI Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhi GN=ppiC PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS  +GG LG  R+GQ+VP F++V
Sbjct: 9   HILVKEEKLAL--DLLEQIKNG-GDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKV 65

Query: 154 AFTTP-LNKVARCKTKFGWHLLQVLSER 180
            F+ P L       T+FG+H+++VL  +
Sbjct: 66  VFSCPVLEPTGPLHTQFGYHIIKVLYRK 93

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Salmonella typhi (taxid: 90370)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A9L5|PPIC_ECOLI Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli (strain K12) GN=ppiC PE=1 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+VP F++V
Sbjct: 9   HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65

Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
            F+ P L       T+FG+H+++VL
Sbjct: 66  VFSCPVLEPTGPLHTQFGYHIIKVL 90

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Escherichia coli (strain K12) (taxid: 83333)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A9L6|PPIC_ECOL6 Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ppiC PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+VP F++V
Sbjct: 9   HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65

Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
            F+ P L       T+FG+H+++VL
Sbjct: 66  VFSCPVLEPTGPLHTQFGYHIIKVL 90

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A9L7|PPIC_ECO57 Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O157:H7 GN=ppiC PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+VP F++V
Sbjct: 9   HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65

Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
            F+ P L       T+FG+H+++VL
Sbjct: 66  VFSCPVLEPTGPLHTQFGYHIIKVL 90

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Escherichia coli O157:H7 (taxid: 83334)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q60B78|SURA_METCA Chaperone SurA OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=surA PE=3 SV=1

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 13/122 (10%)

Query: 88  REILVQ--HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKG---EGGMLGWVR 142
           R IL++   +L  ED  N L  L+ R+  G +D ++LA  HS    KG   +GG LGWV+
Sbjct: 293 RHILIRPNEVLSDEDAKNKLLALKTRIENG-DDFAELARGHS--DDKGSAIKGGDLGWVK 349

Query: 143 KGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS----LLQDIQPDELHKKM 197
            G LVP FEE       N+++   +T+FGWHL+QVL  +E+S    +L++   DEL K+ 
Sbjct: 350 PGALVPPFEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRARDELFKRK 409

Query: 198 QD 199
            D
Sbjct: 410 VD 411

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3JAF1|SURA_NITOC Chaperone SurA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=surA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 12/134 (8%)

Query: 84  GGGDREILVQ----HLLVKEDDLNLLSELQRRVSQGR------EDLSDLAVEHSICPSKG 133
           G G ++++ Q    H+L++ D+L    E+Q R+SQ R      +D S+LA  HS   +  
Sbjct: 273 GEGQQQLVTQTQARHILLRADELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASA 332

Query: 134 -EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPD 191
            +GG LGWV  GQ++P FEE   +    +++   KT+FGWH++QVL  R+ ++ ++   +
Sbjct: 333 LKGGDLGWVSPGQMIPRFEEAMRSLEPGEISEPFKTQFGWHVVQVLDRRQENMTEEFNRN 392

Query: 192 ELHKKMQDPNFHKE 205
               +++     +E
Sbjct: 393 RAKMEIRQRKVEEE 406

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2S9C1|SURA_HAHCH Chaperone SurA OS=Hahella chejuensis (strain KCTC 2396) GN=surA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 26/162 (16%)

Query: 36  QKPASFASFYKSLNPASNS----NSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREIL 91
           Q P+ FA     L P   S    NS  +H ++      K    S   E S          
Sbjct: 247 QVPSLFADVAPKLAPGQTSEPIRNSSGVHFVA---MLEKRGGVSKVVEQSK--------- 294

Query: 92  VQHLLVKEDDL-------NLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRK 143
           V+H+LV++++L        L+ E+  +V  G ED ++LA  +S    S   GG L WV  
Sbjct: 295 VRHILVQQNELRDEIAAKKLIEEIYGKVQAG-EDFAELAKAYSDDAVSAAAGGSLDWVNP 353

Query: 144 GQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASL 184
           G +VPEF+++   TP+  V++  ++ FGWH+LQV   REA +
Sbjct: 354 GDMVPEFDQMMRETPVGAVSKPFQSTFGWHILQVQDRREADI 395

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
225436662	296	PREDICTED: UPF0176 protein Pput_3956 [Vi	0.966	0.966	0.704	1e-103
356554167	291	PREDICTED: UPF0176 protein Pput_3956-lik	0.777	0.790	0.775	1e-103
255639033	291	unknown [Glycine max]	0.777	0.790	0.771	1e-103
358249358	292	uncharacterized protein LOC100803404 [Gl	0.777	0.787	0.767	1e-102
357493891	649	Peptidyl-prolyl cis-trans isomerase C [M	0.962	0.439	0.647	1e-101
388516905	291	unknown [Medicago truncatula]	0.962	0.979	0.647	1e-101
449480987	292	PREDICTED: LOW QUALITY PROTEIN: rhodanes	0.966	0.979	0.637	1e-101
255570207	294	rotamase, putative [Ricinus communis] gi	0.966	0.972	0.646	7e-99
152955225	289	parvulin-type peptidyl prolyl cis/trans	0.780	0.799	0.758	3e-96
224103965	296	predicted protein [Populus trichocarpa]	0.706	0.706	0.822	5e-94

>gi|225436662|ref|XP_002276538.1| PREDICTED: UPF0176 protein Pput_3956 [Vitis vinifera] gi|296083867|emb|CBI24255.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/305 (70%), Positives = 244/305 (80%), Gaps = 19/305 (6%)

Query: 2   MLRASQL---ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPAS--NSNS 56
           MLRA+ L   ASP L A+  SLIPTLNL+S S   I +K +SF+S +  L P +   S+ 
Sbjct: 1   MLRAAHLPPGASPALVALKLSLIPTLNLTSPS---IIRKFSSFSSLHAFL-PKTFLPSSP 56

Query: 57  FHIHIISRSFTSPKA-----ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRR 111
           + + +  + F    A     ASFSSG  G++  G  REILVQHLLVKEDDL LL ELQ+R
Sbjct: 57  YPLSLGLKRFPPMVAQPCPRASFSSG--GNT--GSGREILVQHLLVKEDDLKLLLELQQR 112

Query: 112 VSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGW 171
           +S G  DLSDLAVE+SICPSK EGGMLGWVRKGQ+VPEFEE AF  PLNKV RCKTKFGW
Sbjct: 113 ISGGV-DLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFKAPLNKVVRCKTKFGW 171

Query: 172 HLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR 231
           HLLQV+SERE SLLQDIQP ELH KMQDPNF +E QLIDVREPEEVA +SLPGFQVLPL+
Sbjct: 172 HLLQVISEREESLLQDIQPVELHAKMQDPNFFEEVQLIDVREPEEVAQASLPGFQVLPLQ 231

Query: 232 QFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
           QFG+WGP+IT KFDP+KDTY+MCHHGMRSLQVA+WLQTQGF+RVFNVSGGIHAYATK DP
Sbjct: 232 QFGNWGPEITTKFDPEKDTYLMCHHGMRSLQVAKWLQTQGFKRVFNVSGGIHAYATKADP 291

Query: 292 SIPTY 296
           SIPTY
Sbjct: 292 SIPTY 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554167|ref|XP_003545420.1| PREDICTED: UPF0176 protein Pput_3956-like [Glycine max]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/232 (77%), Positives = 204/232 (87%), Gaps = 2/232 (0%)

Query: 66  FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAV 124
           F  PKA AS+ +G  G++ G   REILVQHLLVKEDD  LL  LQ+++S G EDLSDLAV
Sbjct: 61  FMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSG-EDLSDLAV 119

Query: 125 EHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASL 184
           E+S+CPSK EGGMLGWVRKGQ+VPEFEE AFT PLN+V RCKTKFGWHLLQVLSERE S+
Sbjct: 120 EYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESI 179

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           LQDIQPDELH K+QDP+F  EAQLIDVREP+EVA +SLPGF VLPLRQFGSWGP+IT KF
Sbjct: 180 LQDIQPDELHMKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPEITTKF 239

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           DPQKDTYVMCHHGMRSLQVA+WLQ+QGFR+V+N+SGGIHAYA +VDPS+PTY
Sbjct: 240 DPQKDTYVMCHHGMRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639033|gb|ACU19817.1| unknown [Glycine max]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 204/232 (87%), Gaps = 2/232 (0%)

Query: 66  FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAV 124
           F  PKA AS+ +G  G++ G   REILVQHLLVKEDD  LL  LQ+++S G EDLSDLAV
Sbjct: 61  FMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSG-EDLSDLAV 119

Query: 125 EHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASL 184
           E+S+CPSK EGGMLGWVRKGQ+VPEFEE AFT PLN+V RCKTKFGWHLLQVLSERE S+
Sbjct: 120 EYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESI 179

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           LQDIQPDELH K+QDP+F  EAQLIDVREP+EVA +SLPGF VLPLRQFGSWGP+IT KF
Sbjct: 180 LQDIQPDELHMKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPEITTKF 239

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           DPQKDTYVMCHHGMRSL+VA+WLQ+QGFR+V+N+SGGIHAYA +VDPS+PTY
Sbjct: 240 DPQKDTYVMCHHGMRSLRVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249358|ref|NP_001240041.1| uncharacterized protein LOC100803404 [Glycine max] gi|255636250|gb|ACU18465.1| unknown [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/232 (76%), Positives = 202/232 (87%), Gaps = 2/232 (0%)

Query: 66  FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAV 124
           F  PKA AS+ +G   ++ G   REILVQHLLVKEDD  LL ++Q+R+S G EDLSDLAV
Sbjct: 62  FMPPKATASYGTGASAAAEGDRPREILVQHLLVKEDDQKLLLDIQQRISSG-EDLSDLAV 120

Query: 125 EHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASL 184
           E+S+CPSK EGGMLGWVRKGQ+VPEFEE AFT PLNKV  CKTKFGWHLLQVLSERE S+
Sbjct: 121 EYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNKVVSCKTKFGWHLLQVLSEREESI 180

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           LQDIQPDELH K+QDP+F   AQLIDVREPEEVA +SLPGF VLPLRQFGSWGP+IT KF
Sbjct: 181 LQDIQPDELHVKIQDPSFFDGAQLIDVREPEEVAKASLPGFTVLPLRQFGSWGPEITTKF 240

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           DPQKDTYV+CHHGMRSLQVA+WLQ+QGFR+V+N+SGGIHAYA +VDPS+PTY
Sbjct: 241 DPQKDTYVLCHHGMRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493891|ref|XP_003617234.1| Peptidyl-prolyl cis-trans isomerase C [Medicago truncatula] gi|355518569|gb|AET00193.1| Peptidyl-prolyl cis-trans isomerase C [Medicago truncatula]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/301 (64%), Positives = 225/301 (74%), Gaps = 16/301 (5%)

Query: 2   MLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHI 61
           MLRA Q          +  +P   LSS S++      +  +  +  ++  S    FH H 
Sbjct: 359 MLRACQF---------RVGLPIPKLSSLSTIPSIFSFSFPSHSHSKIHTFSYKKPFHFHS 409

Query: 62  IS---RSFTS--PKAASFSSGTEGSS-PGGGDREILVQHLLVKEDDLNLLSELQRRVSQG 115
            S     FTS  P  AS S  T GSS  GG +REILVQHLLVKEDD  LL +LQ+RV+ G
Sbjct: 410 PSLPLSPFTSTMPPKASASYSTGGSSVEGGAEREILVQHLLVKEDDPKLLVDLQQRVAAG 469

Query: 116 REDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQ 175
            EDLSDLAVEHSICPSK EGGMLGWVRKGQ+VPEFEE AF+ PLNK+ RCKT+FGWHLLQ
Sbjct: 470 -EDLSDLAVEHSICPSKDEGGMLGWVRKGQMVPEFEEAAFSAPLNKIVRCKTQFGWHLLQ 528

Query: 176 VLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS 235
           VLSERE  +L DIQPDELH K QDPNF +EAQLIDVREPEEV  +SLPGF VLPLRQFG+
Sbjct: 529 VLSEREEPVLLDIQPDELHVKFQDPNFLEEAQLIDVREPEEVTTASLPGFTVLPLRQFGT 588

Query: 236 WGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT 295
           WGP+I  KFD QKDTYV+CHHG+RSLQVA+WLQ+QGFR+V+N+SGGIHAYA KVDPS+PT
Sbjct: 589 WGPEINSKFDLQKDTYVLCHHGVRSLQVARWLQSQGFRKVYNISGGIHAYAVKVDPSVPT 648

Query: 296 Y 296
           Y
Sbjct: 649 Y 649

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516905|gb|AFK46514.1| unknown [Medicago truncatula]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/301 (64%), Positives = 225/301 (74%), Gaps = 16/301 (5%)

Query: 2   MLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHI 61
           MLRA Q          +  +P   LSS S++      +  +  +  ++  S    FH H 
Sbjct: 1   MLRACQF---------RVGLPIPKLSSLSTIPSIFSFSFPSHSHSKIHTFSYKKPFHFHS 51

Query: 62  IS---RSFTS--PKAASFSSGTEGSS-PGGGDREILVQHLLVKEDDLNLLSELQRRVSQG 115
            S     FTS  P  AS S  T GSS  GG +REILVQHLLVKEDD  LL +LQ+RV+ G
Sbjct: 52  PSLPLSPFTSTMPPKASASYSTGGSSVEGGAEREILVQHLLVKEDDPKLLVDLQQRVAAG 111

Query: 116 REDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQ 175
            EDLSDLAVEHSICPSK EGGMLGWVRKGQ+VPEFEE AF+ PLNK+ RCKT+FGWHLLQ
Sbjct: 112 -EDLSDLAVEHSICPSKDEGGMLGWVRKGQMVPEFEEAAFSAPLNKIVRCKTQFGWHLLQ 170

Query: 176 VLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS 235
           VLSERE  +L DIQPDELH K QDPNF +EAQLIDVREPEEV  +SLPGF VLPLRQFG+
Sbjct: 171 VLSEREEPVLLDIQPDELHVKFQDPNFLEEAQLIDVREPEEVTTASLPGFTVLPLRQFGT 230

Query: 236 WGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT 295
           WGP+I  KFD QKDTYV+CHHG+RSLQVA+WLQ+QGFR+V+N+SGGIHAYA KVDPS+PT
Sbjct: 231 WGPEINSKFDLQKDTYVLCHHGVRSLQVARWLQSQGFRKVYNISGGIHAYAVKVDPSVPT 290

Query: 296 Y 296
           Y
Sbjct: 291 Y 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480987|ref|XP_004156048.1| PREDICTED: LOW QUALITY PROTEIN: rhodanese-like/PpiC domain-containing protein 12-like [Cucumis sativus]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/301 (63%), Positives = 228/301 (75%), Gaps = 15/301 (4%)

Query: 2   MLRASQL---ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSF- 57
           M+R S+L   ASPV  A  Q  IP +++S + +L      ASF+S+         S SF 
Sbjct: 1   MMRCSRLPPLASPVFNAFRQCWIPAISISHNLNLHSASIYASFSSYV--------SKSFK 52

Query: 58  HIHIISRSFTSPKAASFSSGTEGSSPGGGD--REILVQHLLVKEDDLNLLSELQRRVSQG 115
           H+  +     S    SF      SS GG +  RE+LVQHLLVKEDD+ LLSELQ+R++ G
Sbjct: 53  HVKPLWIRPMSLHRPSFKVTASFSSAGGSEDGRELLVQHLLVKEDDIKLLSELQQRIAGG 112

Query: 116 REDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQ 175
            EDLSDLAVE+S+CPSK E GMLGWVRKGQ+VPEFEE AF  PLNKV +CKTKFGWHLLQ
Sbjct: 113 -EDLSDLAVEYSLCPSKEEXGMLGWVRKGQMVPEFEEAAFNAPLNKVVKCKTKFGWHLLQ 171

Query: 176 VLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS 235
           VLSERE S+L DIQP+ELH KMQD NF  +AQLIDVREPEEV  +SLP FQVLPLRQFGS
Sbjct: 172 VLSEREGSVLLDIQPEELHLKMQDSNFLNDAQLIDVREPEEVDQASLPAFQVLPLRQFGS 231

Query: 236 WGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT 295
           WGP++  KFDP+KDTYV+CHHGMRS+QVA++LQTQGF++V+NV GGIHAY+ KVDPSIPT
Sbjct: 232 WGPEVATKFDPEKDTYVLCHHGMRSMQVARYLQTQGFKKVYNVCGGIHAYSLKVDPSIPT 291

Query: 296 Y 296
           Y
Sbjct: 292 Y 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570207|ref|XP_002526064.1| rotamase, putative [Ricinus communis] gi|223534645|gb|EEF36341.1| rotamase, putative [Ricinus communis]

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/303 (64%), Positives = 226/303 (74%), Gaps = 17/303 (5%)

Query: 2   MLRA-----SQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASF---YKSLNPASN 53
           ML+A     S + SP   A+  S+IPTL+L+ S       K ++FA F    K L P+  
Sbjct: 1   MLKAYSNFPSLITSP---ALKLSVIPTLSLTCSLPSHFHNKHSTFAPFNFLTKILKPSLP 57

Query: 54  SNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVS 113
           S    I         P  AS  S   GS  G   REILVQHLLVKEDDL LL ELQ+R++
Sbjct: 58  S--LPIKWKPYMLGHPPCASSFSSGSGSVDG---REILVQHLLVKEDDLKLLVELQQRIA 112

Query: 114 QGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHL 173
            G EDLSDLAV++SICPSK EGGMLGWVRKG++VPEFEE AF  PLNKV +CKTKFGWHL
Sbjct: 113 GG-EDLSDLAVDYSICPSKAEGGMLGWVRKGEMVPEFEEAAFNAPLNKVVKCKTKFGWHL 171

Query: 174 LQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF 233
           LQVLS+RE S+L+DIQPDE H KMQDP F +EAQLIDVREP+EV  +SLPGFQ+LPLRQF
Sbjct: 172 LQVLSDREESVLKDIQPDEFHVKMQDPKFVEEAQLIDVREPDEVEKASLPGFQILPLRQF 231

Query: 234 GSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 293
           GSW  +I  KFD QKDTYVMCHHG+RSLQVA+WLQTQGF+RVFNV+GGIHAYA KVDPS+
Sbjct: 232 GSWATEIAAKFDSQKDTYVMCHHGVRSLQVAKWLQTQGFKRVFNVAGGIHAYAVKVDPSV 291

Query: 294 PTY 296
           PTY
Sbjct: 292 PTY 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|152955225|emb|CAM59673.1| parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 176/232 (75%), Positives = 201/232 (86%), Gaps = 1/232 (0%)

Query: 65  SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAV 124
           S  +PKA++  S    S  GGG+REILVQHLLVKE+D  LL +L +R+S+G EDLSDLAV
Sbjct: 59  SIMAPKASASYSTGSSSGEGGGEREILVQHLLVKEEDQKLLLDLLQRISKG-EDLSDLAV 117

Query: 125 EHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASL 184
           E+SICPSK EGGMLGWVRKGQ+VPEFEE AF  PLNKV RCKT+FGWHLLQVLSERE SL
Sbjct: 118 EYSICPSKDEGGMLGWVRKGQMVPEFEEAAFGAPLNKVVRCKTQFGWHLLQVLSEREESL 177

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           LQDIQP ELH K QDPNF +EAQLIDVREPEEV  +SLPGF VLPLRQFG+WGP++T KF
Sbjct: 178 LQDIQPAELHAKFQDPNFSEEAQLIDVREPEEVDKASLPGFTVLPLRQFGTWGPEVTTKF 237

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           DPQKDTYVMCHHG+RSLQV++WLQ+QGFR+V+NVSGGIHAYA +VDPS+P Y
Sbjct: 238 DPQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGGIHAYAVQVDPSVPKY 289

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103965|ref|XP_002313264.1| predicted protein [Populus trichocarpa] gi|222849672|gb|EEE87219.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/209 (82%), Positives = 192/209 (91%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 147
           RE+LVQHLLVKEDDL LL ELQ+R+S G EDLSDLAVE+S+CPSK EGGMLGWVRKGQ+V
Sbjct: 88  RELLVQHLLVKEDDLKLLLELQQRISGGGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMV 147

Query: 148 PEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 207
           PEFEE AF+ PLNKV RCKTKFGWHLLQV+SERE SLL +IQ DELH K+QDP F KEAQ
Sbjct: 148 PEFEEAAFSAPLNKVVRCKTKFGWHLLQVISEREESLLGEIQADELHVKIQDPTFAKEAQ 207

Query: 208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267
           LIDVREP+EVA +SLPGF+VLPLRQFGSWGP++T KFDP+KDTYVMCHHGMRSLQVA+WL
Sbjct: 208 LIDVREPDEVAKASLPGFEVLPLRQFGSWGPEVTTKFDPEKDTYVMCHHGMRSLQVAKWL 267

Query: 268 QTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           Q+QGF+RVFNVSGGIHAYA +VDPSIPTY
Sbjct: 268 QSQGFKRVFNVSGGIHAYAVRVDPSIPTY 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2150235	299	AT5G19370 [Arabidopsis thalian	0.695	0.688	0.660	2.8e-73
UNIPROTKB|Q607L7	106	MCA1742 "Rhodanese-like domain	0.358	1.0	0.392	1.1e-16
TIGR_CMR|CPS_3482	92	CPS_3482 "peptidyl-prolyl cis-	0.273	0.880	0.458	2.1e-13
TIGR_CMR|CPS_3636	92	CPS_3636 "peptidyl-prolyl cis-	0.273	0.880	0.447	2.1e-13
UNIPROTKB|P0A9L5	93	ppiC "peptidyl-prolyl cis-tran	0.273	0.870	0.447	3.4e-13
TIGR_CMR|SO_1832	92	SO_1832 "peptidyl-prolyl cis-t	0.280	0.902	0.436	1.9e-12
TIGR_CMR|GSU_0823	92	GSU_0823 "peptidyl-prolyl cis-	0.273	0.880	0.376	3.1e-12
UNIPROTKB|Q4KAR2	93	ppiC_1 "Peptidyl-prolyl cis-tr	0.290	0.924	0.388	1.4e-11
TIGR_CMR|CPS_0749	92	CPS_0749 "peptidyl-prolyl cis-	0.273	0.880	0.380	1.4e-11
TIGR_CMR|SO_0635	92	SO_0635 "peptidyl-prolyl cis-t	0.273	0.880	0.392	4.4e-11

TAIR|locus:2150235 AT5G19370 [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 138/209 (66%), Positives = 172/209 (82%)

Query:    88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 147
             REILVQHLLVK +D+ L +ELQ++   G E++SDLA E+SICPSK +GG+LGWV+ GQ+V
Sbjct:    94 REILVQHLLVKNNDVELFAELQKKFLDG-EEMSDLAAEYSICPSKKDGGILGWVKLGQMV 152

Query:   148 PEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 207
             PEFEE AF   LN+V RC+T+FG HLLQVLSERE   ++DIQ +ELH KMQDP F  EAQ
Sbjct:   153 PEFEEAAFKAELNQVVRCRTQFGLHLLQVLSEREP--VKDIQVEELHSKMQDPVFMDEAQ 210

Query:   208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267
             LIDVREP E+ ++SLPGF+V PLRQFG+W PDIT K +P+KDT+V+C  G RS+QVA WL
Sbjct:   211 LIDVREPNEIEIASLPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWL 270

Query:   268 QTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
             Q+QGF+ V+N++GGI AY+ KVDPSIPTY
Sbjct:   271 QSQGFKSVYNITGGIQAYSLKVDPSIPTY 299

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016853 "isomerase activity" evidence=IEA;ISS

UNIPROTKB|Q607L7 MCA1742 "Rhodanese-like domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 44/112 (39%), Positives = 67/112 (59%)

Query:   185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
             ++ + P ++   + +P       L+DVREP E A   + G   +P+ +  S   ++    
Sbjct:     1 MRQLTPHQVKALLDEPE--AAPLLLDVREPGEFAFCHIDGSLHIPMGEIVSRLGEL---- 54

Query:   245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
             DP   T V+CHHGMRS QVA++L+TQGF RV N++GGI A+A + DP +P Y
Sbjct:    55 DPDWTTVVVCHHGMRSFQVARFLETQGFGRVINLAGGIDAWAREADPGMPRY 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3482 CPS_3482 "peptidyl-prolyl cis-trans isomerase C" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query:    94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
             H+LVK + L +  EL+ ++ +G  +   LA +HS+CPSK +GG LG  R+GQ+V  F++V
Sbjct:     8 HILVKTEKLAV--ELKTQLDKGA-NFGALAKKHSLCPSKKKGGDLGEFRRGQMVKAFDDV 64

Query:   154 AFTTPLNKV-ARCKTKFGWHLLQVL 177
              F  PL KV    KTKFG+HL++ L
Sbjct:    65 VFKRPLLKVHGPIKTKFGYHLIKTL 89

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|CPS_3636 CPS_3636 "peptidyl-prolyl cis-trans isomerase C" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/85 (44%), Positives = 56/85 (65%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEE 152
             +HLLV  ++  L   L+  +  G+ D +++A EHS CPS  +GG LG    GQ+VPEF++
Sbjct:     7 RHLLVDTEEKCLA--LKAEIEAGK-DFAEVAKEHSNCPSNAQGGDLGSFGPGQMVPEFDK 63

Query:   153 VAFTTPLNKV-ARCKTKFGWHLLQV 176
             V F+ PLN V    +T+FG+HLL+V
Sbjct:    64 VVFSAPLNTVQGPVQTQFGYHLLEV 88

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|P0A9L5 ppiC "peptidyl-prolyl cis-trans isomerase C (rotamase C)" [Escherichia coli K-12 (taxid:83333)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
             H+LVKE+ L L  +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+VP F++V
Sbjct:     9 HILVKEEKLAL--DLLEQIKNGA-DFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65

Query:   154 AFTTP-LNKVARCKTKFGWHLLQVL 177
              F+ P L       T+FG+H+++VL
Sbjct:    66 VFSCPVLEPTGPLHTQFGYHIIKVL 90

GO:0005515 "protein binding" evidence=IPI

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA

TIGR_CMR|SO_1832 SO_1832 "peptidyl-prolyl cis-trans isomerase C" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 38/87 (43%), Positives = 53/87 (60%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEE 152
             +HLLV  +D      L++++  G  D + +A  HS CPS  +GG LG    G +V EF+E
Sbjct:     7 RHLLVSSEDQ--CQALKQQILDGA-DFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDE 63

Query:   153 VAFTTPLNKV-ARCKTKFGWHLLQVLS 178
             V F+ PLN V    KT+FG+HLL+V S
Sbjct:    64 VVFSAPLNVVQGPVKTQFGYHLLEVTS 90

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|GSU_0823 GSU_0823 "peptidyl-prolyl cis-trans isomerase C" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/85 (37%), Positives = 57/85 (67%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEE 152
             +H+LV  +   L  +L+  +  G E  +D+A +HS+CPS+ +GG LG   +GQ+V EF++
Sbjct:     7 RHILVSSEAECL--QLKAEIEAGAE-FADVARQHSLCPSRAQGGDLGTFTQGQMVKEFDD 63

Query:   153 VAFTTPLNKV-ARCKTKFGWHLLQV 176
             + F+  +NKV    +T+FG+HL+++
Sbjct:    64 IVFSGEINKVLGPVRTQFGYHLIEI 88

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|Q4KAR2 ppiC_1 "Peptidyl-prolyl cis-trans isomerase C" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 158 (60.7 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 35/90 (38%), Positives = 56/90 (62%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEE 152
             +H+LV  +     +EL+  +  G  D +++A ++S CPS  +GG LG    GQ+V EF+ 
Sbjct:     7 RHILVASEAK--CNELKAEIEAGA-DFAEVAKKNSTCPSSRDGGNLGSFGPGQMVKEFDT 63

Query:   153 VAFTTPLNKV-ARCKTKFGWHLLQVLSERE 181
             V F+ P+N V    KT+FG+HLL+V S ++
Sbjct:    64 VVFSAPVNVVQGPVKTQFGYHLLEVTSRQD 93

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|CPS_0749 CPS_0749 "peptidyl-prolyl cis-trans isomerase C" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 158 (60.7 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 32/84 (38%), Positives = 55/84 (65%)

Query:    94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
             H+LVK  ++    ++  ++ +G +    LA ++S CPS  +GG LG  ++GQ+VP+F+++
Sbjct:     9 HILVKHKEI--AEDIIEQLGKGAK-FQTLAKKYSSCPSGKKGGDLGEFKRGQMVPQFDKI 65

Query:   154 AFTTPLNKVARCKTKFGWHLLQVL 177
             AF   L +    KTKFGWH+++VL
Sbjct:    66 AFKGALLESHLVKTKFGWHVIKVL 89

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|SO_0635 SO_0635 "peptidyl-prolyl cis-trans isomerase C" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 154 (59.3 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 33/84 (39%), Positives = 54/84 (64%)

Query:    94 HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
             H+LVK  +     ++ ++++ G  +   LA  +S CPS  +GG LG  ++GQ+VP+F++V
Sbjct:     9 HILVKHKEQ--AEDIIKQLNNGA-NFGALAKRYSSCPSAKKGGDLGEFKRGQMVPQFDKV 65

Query:   154 AFTTPLNKVARCKTKFGWHLLQVL 177
             AF+  L      KTKFGWH+++VL
Sbjct:    66 AFSGELLVPHLVKTKFGWHVVKVL 89

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WI0	STR12_ARATH	No assigned EC number	0.6602	0.6959	0.6889	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	LOW CONFIDENCE prediction!
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
4th Layer	5.2.1.8	LOW CONFIDENCE prediction!
3rd Layer	2.8.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	2e-41
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	4e-21
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	5e-19
pfam00639	94	pfam00639, Rotamase, PPIC-type PPIASE domain	1e-18
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	1e-16
PRK15441	93	PRK15441, PRK15441, peptidyl-prolyl cis-trans isom	3e-15
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	1e-14
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	1e-13
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	1e-13
pfam13616	114	pfam13616, Rotamase_3, PPIC-type PPIASE domain	9e-13
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	1e-12
COG0760	320	COG0760, SurA, Parvulin-like peptidyl-prolyl isome	5e-12
PRK03095	287	PRK03095, prsA, peptidylprolyl isomerase; Reviewed	1e-11
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	1e-10
TIGR02933	256	TIGR02933, nifM_nitrog, nitrogen fixation protein	2e-10
PRK02998	283	PRK02998, prsA, peptidylprolyl isomerase; Reviewed	3e-09
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	5e-09
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-09
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-08
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	9e-08
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	2e-07
cd01518	101	cd01518, RHOD_YceA, Member of the Rhodanese Homolo	2e-07
PRK00059	336	PRK00059, prsA, peptidylprolyl isomerase; Provisio	1e-06
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	1e-06
PRK03002	285	PRK03002, prsA, peptidylprolyl isomerase; Reviewed	2e-06
PTZ00356	115	PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isom	2e-06
COG1054	308	COG1054, COG1054, Predicted sulfurtransferase [Gen	1e-05
PRK00142	314	PRK00142, PRK00142, putative rhodanese-related sul	6e-05
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	1e-04
PRK10770	413	PRK10770, PRK10770, peptidyl-prolyl cis-trans isom	3e-04
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	4e-04
TIGR04271	101	TIGR04271, ThiI_C_thiazole, thiazole biosynthesis	0.002
PRK01269	482	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase;	0.003

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score =  138 bits (350), Expect = 2e-41
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 246
            I   EL + + D    +E  LIDVREPEE+ ++ LPGF  LP+ +      ++    +P
Sbjct: 1   QISVAELAEWLADER--EEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELD-SDNP 57

Query: 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290
            KD  V+CHHG RS+QVAQWL  QGF  V+N+ GGI A++ +VD
Sbjct: 58  DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLEVD 101

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 86.1 bits (213), Expect = 4e-21
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKF 244
           + I  DE    +   +    A L+DVREPEE     +PG    +PL +  +    + +  
Sbjct: 5   ETISEDEAALLLAGED----AVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLELPD 60

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
           D      V C  G+RS   A  L+  GF  V+N+ GGI A+     P +  Y
Sbjct: 61  D--DPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110

Length = 110

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 79.7 bits (197), Expect = 5e-19
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 192 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDT- 250
           EL + + D    ++A L+DVREPEE A   +PG   +PL +      +     +  KD  
Sbjct: 1   ELKELLDD----EDAVLLDVREPEEYAAGHIPGAINIPLSEL----EERAALLELDKDKP 52

Query: 251 -YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
             V C  G RS + A+ L+  G   V+N+ GG+ A+ 
Sbjct: 53  IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain

 Score = 78.8 bits (195), Expect = 1e-18
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 94  HLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRKGQ 145
           H+L+K               E+  ++  G +  ++LA E+S  CPS   GG LGW  +GQ
Sbjct: 1   HILIKPPESADRAAAKAKAEEILEQLQSGEDTFAELAREYSDDCPSAANGGDLGWFTRGQ 60

Query: 146 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 177
           L PEFE+ AF+    +++   +T FG+H+++V 
Sbjct: 61  LPPEFEDAAFSLKEGEISGPVETPFGYHIIKVT 93

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 94

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 174 LQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF 233
           L++LS  E      +   +    +Q     K+  L+DVR      +  LP    +PL + 
Sbjct: 1   LKLLSPEER-----VSVKDYKNILQA---GKKHVLLDVRPKVHFEICRLPEAINIPLSEL 52

Query: 234 GSWGPDIT------VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRR-VFNVSGGIHAYA 286
            S   ++       +  D     YV+C  G  S    + L+  G  R V ++ GG+ A+A
Sbjct: 53  LSKAAELKSLQELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWA 112

Query: 287 TKVDPSIPTY 296
            KVDP+ P Y
Sbjct: 113 DKVDPTFPLY 122

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional

 Score = 69.3 bits (169), Expect = 3e-15
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+VP F++V
Sbjct: 9   HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 65

Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
            F+ P L       T+FG+H+++VL
Sbjct: 66  VFSCPVLEPTGPLHTQFGYHIIKVL 90

Length = 93

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS--LPGFQVLPLRQFGSWGPDITVKFD 245
           I  DEL + +          L+DVR+P   A     +PG   L       W  D     D
Sbjct: 2   ISVDELAELLAAGE---APVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGD----LD 54

Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284
             +   V C+HG  S Q+AQ L+  GF  V +++GG  A
Sbjct: 55  RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEA 93

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 202 FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV----------KFDPQKDTY 251
             ++  L+DVR PEE     +PG   +PL +      ++ +            D  K   
Sbjct: 1   NDEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVV 60

Query: 252 VMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
           V C  G RS + A  L+  GF+ V+ + GG   ++    P
Sbjct: 61  VYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 190 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG-----FQVLPLRQFGSWGPDITVKF 244
            +EL   ++  +      LIDVR PEE A   +PG       +  L +  S   ++  K 
Sbjct: 2   AEELKALLEADDVV----LIDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESELEELGKKL 57

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQ-----GFRRVFNVSGGIHAYATK 288
           D  K   V C  G RS Q A  L        G++ V+ + GG  A+  +
Sbjct: 58  DKDKTIVVYCASGNRSGQAAALLLALILKALGYKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 89  EILVQHLLVKEDDLNLLSELQRR------VSQGREDLSDLAVEHSICP-SKGEGGMLGWV 141
            + V+H+LV        +E +          +G  D + LA ++S  P SK +GG LGW 
Sbjct: 15  SVKVRHILVAYAGAQRKAEAKALADSIYNALKGGADFAALAKKYSDDPGSKAQGGDLGWF 74

Query: 142 -RKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVL 177
              GQ+V EF +  FT  + ++   +T FG+H++QV 
Sbjct: 75  TASGQMVKEFIDALFTLKVGEIGVVETPFGYHIIQVT 111

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 114

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 176 VLSE--REASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF 233
           V+S+  ++A+    I P EL K+  D    K+  LIDVREP E  +  +PG Q++P  + 
Sbjct: 275 VVSDEAQQAAAGSTITPREL-KEWLDSG--KKIALIDVREPVEWDIVHIPGAQLIPKSEI 331

Query: 234 GSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 293
            S   +   K    +   + C  G+RS +    L+  GF    ++ GG+ A+A +VDPS+
Sbjct: 332 LS--GEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDPSL 389

Query: 294 PTY 296
           P Y
Sbjct: 390 PMY 392

Length = 392

>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

 Score = 65.1 bits (158), Expect = 5e-12
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 5/103 (4%)

Query: 87  DREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGE-GGMLGWVRKGQ 145
            R ILV+    +      L+ L++ V + + D ++LA + S  PS    GG+LGW +KGQ
Sbjct: 171 ARHILVK---AEAKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQ 227

Query: 146 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQD 187
           LVPEF + AF   + +V+   KT FG+H+++V  +R+A L   
Sbjct: 228 LVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEKKRDAKLDFP 270

Length = 320

>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 10/134 (7%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 147
           EI   H+LVK++      +++  + QG+    +LA ++S    SK +GG LG+   G++V
Sbjct: 132 EIKASHILVKDEAT--AKKVKEELGQGKS-FEELAKQYSEDTGSKEKGGDLGFFGAGKMV 188

Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQV--LSEREASLLQ---DIQPDELHKKMQDPN 201
            EFE+ A+    ++V+   K++FG+H+++V  + E E S  Q   DI+ + + KK QD  
Sbjct: 189 KEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVQKKAQDGE 248

Query: 202 FHKEAQLIDVREPE 215
           F  +  + ++++ +
Sbjct: 249 FMNDLMMKEIKKAD 262

Length = 287

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           +Q  EL     D        LIDVR P+E     + G   +PL +      D   +    
Sbjct: 1   VQWHELDNYRAD-----GVTLIDVRTPQEFEKGHIKGAINIPLDEL----RDRLNELPKD 51

Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 287
           K+  V C  G+R    A+ L   GF +V N+ GG   Y+T
Sbjct: 52  KEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYST 90

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 91  LVQHLL--VKEDDLNLLSE----LQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKG 144
           L +HLL  V EDD   +      + RR+       ++ A+ HS CP+  EGG+LGWV +G
Sbjct: 125 LTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRG 184

Query: 145 QLVPEFEEVAFTTPLNKV-ARCKTKFGWHLL 174
            L P+ +   F     ++    +++ GWHLL
Sbjct: 185 LLYPQLDAALFQLAEGELSPPIESEIGWHLL 215

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase [Central intermediary metabolism, Nitrogen fixation]. Length = 256

>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 9/128 (7%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 147
           E+ V H+LVK  D     E++ +V+ G ED + LA ++S    SK +GG +     GQ V
Sbjct: 134 EMKVSHILVK--DEKTAKEVKEKVNNG-EDFAALAKQYSEDTGSKEQGGEISGFAPGQTV 190

Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQD----IQPDELHKKMQDPNF 202
            EFEE A+     +V+   KT +G+H+++V  ++E     +    I+ D   +++QD   
Sbjct: 191 KEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDLEQQRLQDTTG 250

Query: 203 HKEAQLID 210
             + Q+++
Sbjct: 251 KWKQQVVN 258

Length = 283

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           +++I P E   +         A LIDVRE  E A     G   +P R F     + T   
Sbjct: 2   IREISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIP-RGFLELRIE-THLP 54

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
           D  ++  ++C  G RS   A  L+  G+ RV +V+GG  A+ 
Sbjct: 55  DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWK 96

Length = 376

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VK-FDPQKDTYVMCHHGMRSLQVAQ 265
           LIDVR P E  ++ +PG  ++PL    + GP +  VK           C  G RS +   
Sbjct: 302 LIDVRNPNEYEIARIPGSVLVPLPDIEN-GPGVEKVKELLNGHRLIAHCKMGGRSAKALG 360

Query: 266 WLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
            L+  G     NV GGI A++ +VDPS+P Y
Sbjct: 361 ILKEAGIEGT-NVKGGITAWSREVDPSVPQY 390

Length = 390

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 206 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265
             LIDVREP E A  S+PG   +PL                  +  V C  G+RS Q   
Sbjct: 275 VTLIDVREPSEFAAYSIPGAHNVPLSAI--REGANPPSVSAGDEVVVYCAAGVRSAQAVA 332

Query: 266 WLQTQGFRRVFNVSGGIHAY 285
            L+  G+  + ++ GGI  +
Sbjct: 333 ILERAGYTGMSSLDGGIEGW 352

Length = 355

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           I  ++ H+K+Q+      A L+D+R+P+  A+   PG   L     G++       FD  
Sbjct: 7   INVEQAHQKLQE----GGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQ--ADFD-- 58

Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 287
               VMC+HG  S   AQ+L  QGF  V+++ GG  A+  
Sbjct: 59  TPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRR 98

Length = 108

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSW----GPDITV 242
           + P++    +  P       L+DVR+P E+     +PG    P      W     P    
Sbjct: 1   LSPEDARALLGSP----GVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKP 56

Query: 243 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
            F   K     C  G RS    + LQ  G + V+N+ GG   + 
Sbjct: 57  AFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWK 100

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain superfamily

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 246
            + P E ++ ++DP    E  L+DVR   E  +    G     +  F  +   +    D 
Sbjct: 3   YLSPAEWNELLEDP----EVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDL 58

Query: 247 QKDTYVM--CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
            K   V+  C  G+R  + + +L+ +GF+ V+ + GGI  Y 
Sbjct: 59  LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. Length = 101

>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 27/131 (20%)

Query: 89  EILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWV--RKG 144
            + + H+LVK ED+     ++++R+ +G ED + +A E S  P SK +GG LG V     
Sbjct: 196 TMHLAHILVKTEDEAK---KVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDVPYSDS 251

Query: 145 QLVPEFEEVAFTTPLNK---VARCKTKFGWHLLQVLSERE--------------ASLLQD 187
               EF + A    L +    A  KT+FG+H+++ + ++E                LLQ+
Sbjct: 252 GYDKEFMDGA--KALKEGEISAPVKTQFGYHIIKAIKKKEYPVKPFDSVKEDIKKQLLQE 309

Query: 188 IQPDELHKKMQ 198
            Q +   KK++
Sbjct: 310 KQSEVFKKKIE 320

Length = 336

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 200 PNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-GSW---GPDITVKF-----DPQKDT 250
           PN H    LIDVREPEE+    +PG   +PL     +      +   K+        K+ 
Sbjct: 10  PNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKEL 69

Query: 251 YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 281
              C  G+RS   A+  ++ G+  V N  G 
Sbjct: 70  IFYCKAGVRSKAAAELARSLGYENVGNYPGS 100

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 11/124 (8%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV 147
           EI   H+LV   D N   E+++++  G     +LA + S    SK +GG LG+   G++ 
Sbjct: 136 EIKASHILV--SDENEAKEIKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNSGRMA 192

Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ-----DPN 201
           PEFE  A+   + +++   K+  G+H++++  +++     +++ D + K ++     DP 
Sbjct: 193 PEFETAAYKLKVGQISNPVKSPNGYHIIKLTDKKDLKPYDEVK-DSIRKNLEEERTADPI 251

Query: 202 FHKE 205
           F K+
Sbjct: 252 FGKK 255

Length = 285

>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 98  KEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 157
           KE+ +  L++ + ++  G +   ++A + S C S  +GG LG+  +GQ+   FE+ AF  
Sbjct: 34  KEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQMQKPFEDAAFAL 93

Query: 158 PLNKVAR-CKTKFGWHLLQ 175
            + +++    T  G H++ 
Sbjct: 94  KVGEISDIVHTDSGVHIIL 112

Length = 115

>gnl|CDD|223982 COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           + P + ++ + DP+      +ID R   EVA+    G     +  F  +   +    D  
Sbjct: 115 LSPKDWNELLSDPD----VVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLL 170

Query: 248 KDTYVM--CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 289
           KD  V+  C  G+R  + + W++  GF+ V+++ GGI  Y   V
Sbjct: 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDV 214

Length = 308

>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase; Provisional

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLP----LRQFGSWGPDITVK 243
           ++P E+++ + DP    +   ID+R   E  +       + P     R+F  W   +   
Sbjct: 114 LKPKEVNELLDDP----DVVFIDMRNDYEYEIGHFEN-AIEPDIETFREFPPW---VEEN 165

Query: 244 FDPQKDTYVM--CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 289
            DP KD  V+  C  G+R  + + W++ +GF+ V+ + GGI  Y    
Sbjct: 166 LDPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGEDP 213

Length = 314

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVR-EPEEVALSSLPGFQVLPLRQFGSWGPD----ITV 242
           + P E    +Q      +A L+DVR E E   +  +P    +  + +     +      +
Sbjct: 1   LTPAEAWALLQADP---QAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAEL 57

Query: 243 KFDPQKDTYV--MCHHGMRSLQVAQWLQTQGFRRVFNVSGG 281
           +    KD  V  +C  G RS+  A+     GF  V+NV  G
Sbjct: 58  EEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEG 98

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 105 LSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA 163
           L ++   +  G+   +  A E S  P S  +GG LGW       P+  + AF   L ++ 
Sbjct: 289 LEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWA-----TPDIFDPAFRDALMRLN 343

Query: 164 R------CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 207
           +        + FGWHL+++L  R+       Q D  ++ + +  F +EAQ
Sbjct: 344 KGQISAPVHSSFGWHLIELLDTRQVDKTDAAQKDRAYRMLFNRKFSEEAQ 393

Length = 413

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           L  I P++  + +        A L+D+REP+E     +PG +++PL Q  S G    +  
Sbjct: 1   LTTISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESEG----LPL 51

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
                    C  GMR+ Q A+ L        + + GG+ A+ 
Sbjct: 52  VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWK 93

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|211994 TIGR04271, ThiI_C_thiazole, thiazole biosynthesis domain

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 20/77 (25%)

Query: 209 IDVREPEEVALS--SLPGFQVLPL------RQFGSWGPDITVKFDPQKDTYVM-CHHG-M 258
           ID+R P+E   +   L G +V+ +       QF             Q  TY++ C  G M
Sbjct: 30  IDIRHPDEQEKAPLELEGVEVIKIPFYKLATQFAEL---------DQDKTYLLYCDKGVM 80

Query: 259 RSLQVAQWLQTQGFRRV 275
             LQ A +L+ QGF  V
Sbjct: 81  SRLQ-ALYLKEQGFTNV 96

The ThiI protein of Escherichia coli is a bifunctional protein in which most of the length of the protein is responsible for sulfurtransferase activity in 4-thiouridine modification to tRNA (EC 2.8.1.4 - see model TIGR00342). This rhodanese-like C-terminal domain, by itself, is able to synthesize the thiazole moiety during thiamin biosynthesis. Note that the invariant Cys residue in this domain is unusual in being required for both activities of the bifunctional ThiI protein. Length = 101

>gnl|CDD|234932 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 24/122 (19%)

Query: 168 KFGWHLL-QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ----LIDVREPEEVALSSL 222
           KF + +L +V+ E     +++I  ++  +++ +     E      +ID+R P+E     L
Sbjct: 366 KFDFAILDRVVEEARNIDIREI-AEQTEQEVVEVETVSELPPDDVIIDIRSPDEQEDKPL 424

Query: 223 PGFQVLPLR--------QFGSWGPDITVKFDPQKDTYVM-CHHGMRSLQVAQWLQTQGFR 273
               V            QFG          D  K TY++ C  G+ S   A +L+ QGF 
Sbjct: 425 KLEGVEVKSLPFYKLSTQFG--------DLDQSK-TYLLYCDRGVMSRLQALYLREQGFS 475

Query: 274 RV 275
            V
Sbjct: 476 NV 477

Length = 482

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.93
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.89
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.87
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.87
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	99.87
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.87
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.85
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.85
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.85
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.85
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	99.84
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.84
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	99.84
PLN02160	136	thiosulfate sulfurtransferase	99.83
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.83
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.82
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.82
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.82
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.81
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.81
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.81
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	99.8
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.8
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.8
PRK01415	247	hypothetical protein; Validated	99.8
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	99.8
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.8
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.79
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.79
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.79
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.79
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.79
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.79
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.79
PRK07411	390	hypothetical protein; Validated	99.78
PRK05320	257	rhodanese superfamily protein; Provisional	99.78
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.77
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.77
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.76
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.76
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.76
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	99.76
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.75
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	99.75
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.74
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.74
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	99.74
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.73
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.73
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.73
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.73
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	99.72
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	99.71
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.71
KOG3258	133	consensus Parvulin-like peptidyl-prolyl cis-trans	99.69
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	99.67
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.67
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.66
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.66
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.66
PRK12450	309	foldase protein PrsA; Reviewed	99.63
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.63
PRK01326	310	prsA foldase protein PrsA; Reviewed	99.62
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.62
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.61
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.61
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.57
COG1054	308	Predicted sulfurtransferase [General function pred	99.57
PRK10788	623	periplasmic folding chaperone; Provisional	99.57
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.55
TIGR02925	232	cis_trans_EpsD peptidyl-prolyl cis-trans isomerase	99.52
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.46
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.35
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.34
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.28
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	99.19
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.03
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	99.02
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.65
PRK10788	623	periplasmic folding chaperone; Provisional	98.64
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	98.58
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	98.38
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	98.37
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.31
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	98.17
KOG3258	133	consensus Parvulin-like peptidyl-prolyl cis-trans	98.16
PF13145	121	Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2	98.07
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	98.04
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	97.79
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	97.7
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	97.63
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	97.52
COG2603	334	Predicted ATPase [General function prediction only	96.48
PRK12450	309	foldase protein PrsA; Reviewed	96.34
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	96.26
PRK01326	310	prsA foldase protein PrsA; Reviewed	96.24
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	95.39
TIGR02925	232	cis_trans_EpsD peptidyl-prolyl cis-trans isomerase	94.48
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	92.16
KOG1093	725	consensus Predicted protein kinase (contains TBC a	91.26
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	87.25
KOG1717	343	consensus Dual specificity phosphatase [Defense me	84.9
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	84.77

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.93  E-value=3.3e-27  Score=220.84  Aligned_cols=177  Identities=17%  Similarity=0.222  Sum_probs=150.4

Q ss_pred             cccccCCch----hhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccC
Q 022496            3 LRASQLASP----VLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSG   77 (296)
Q Consensus         3 ~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~   77 (296)
                      ++.+||+-+    .+.+.+.......+.++..+..|. .|+.+ +.||+++. +.+||++||+..+.+.++|+.+.|.++
T Consensus       156 ~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~-~F~~lA~~yS~~~~-a~~gGdlg~~~~~~l~~~~~~~~~~l~  233 (413)
T PRK10770        156 LNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGA-DFGKLAIAYSADQQ-ALKGGQMGWGRIQELPGLFAQALSTAK  233 (413)
T ss_pred             EEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHhCCCcc-cccCCcCCccccccccHHHHHHHHhCC
Confidence            355677643    234445555566677777777774 89999 99999985 889999999999999999999999999


Q ss_pred             CCCCCCC--------------CC-------CceEEEeeEeeccc-------hHHHHHHHHHHHhcCC-ccHHHHHHhhCC
Q 022496           78 TEGSSPG--------------GG-------DREILVQHLLVKED-------DLNLLSELQRRVSQGR-EDLSDLAVEHSI  128 (296)
Q Consensus        78 ~~~i~~~--------------~~-------~~~~~~~~Il~~~~-------~~~~a~~i~~~l~~~g-~~F~~la~~~S~  128 (296)
                      +|+|+.|              ..       ..+++++||++++.       +++++++|+++|. +| .+|+++|++||+
T Consensus       234 ~G~is~Pi~t~~GyhIikl~~~~~~~~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~-~g~~~F~~~A~~~S~  312 (413)
T PRK10770        234 KGDIVGPIRSGVGFHILKVNDLRGESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIK-SGKTTFAAAAKEFSQ  312 (413)
T ss_pred             CCCCCCcEECCCceEEEEEeeeccccccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHH-cCcccHHHHHHHhCC
Confidence            9999988              11       23689999999853       5678999999996 67 599999999999


Q ss_pred             CC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhh
Q 022496          129 CP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       129 d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~  182 (296)
                      |+ ++.+||+|||+..+.++|+|..++++|++|++| |+.|++|||||++++.+..
T Consensus       313 d~~s~~~gG~lg~~~~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~~~  368 (413)
T PRK10770        313 DPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTRQV  368 (413)
T ss_pred             CCChHhhCCcCCccCccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecccC
Confidence            97 889999999999999999999999999999999 8999999999999987654

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=3e-23  Score=161.80  Aligned_cols=108  Identities=29%  Similarity=0.507  Sum_probs=93.8

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc------CCCCCCCcEEEEeCCChh
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT------VKFDPQKDTYVMCHHGMR  259 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~------~~~~~~~~iv~~C~~G~r  259 (296)
                      ..++.+++.+.+.+.   .+..+||+|++.||..||||||+|+|+..+..+...+.      ..++++++||+||++|.|
T Consensus         8 ~~is~~el~~~~~~~---~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~r   84 (122)
T cd01526           8 ERVSVKDYKNILQAG---KKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGND   84 (122)
T ss_pred             cccCHHHHHHHHhCC---CCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCCc
Confidence            457888998888653   36789999999999999999999999998866443321      124789999999999999


Q ss_pred             HHHHHHHHHHcCC-CceEEccchHHHhhhccCCCCCCC
Q 022496          260 SLQVAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY  296 (296)
Q Consensus       260 s~~aa~~L~~~G~-~~v~~l~GG~~~W~~~~~~~~~~~  296 (296)
                      |..++..|+..|| ++|++|+||+.+|..++++.+|+|
T Consensus        85 s~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~  122 (122)
T cd01526          85 SQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY  122 (122)
T ss_pred             HHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence            9999999999999 799999999999999999999998

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.87  E-value=1.5e-22  Score=154.61  Aligned_cols=98  Identities=21%  Similarity=0.252  Sum_probs=83.9

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+.+.++   .+..+||||++.||..||||||+|+|+..|......+.  .+++++|||||.+|.||..++.
T Consensus        10 ~~i~~~~l~~~~~~~---~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~rs~~a~~   84 (109)
T cd01533          10 PSVSADELAALQARG---APLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRTRSIIGAQ   84 (109)
T ss_pred             CcCCHHHHHHHHhcC---CCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCchHHHHHH
Confidence            568888999888753   35689999999999999999999999988765433332  2568899999999999999999


Q ss_pred             HHHHcCCCc-eEEccchHHHhhhc
Q 022496          266 WLQTQGFRR-VFNVSGGIHAYATK  288 (296)
Q Consensus       266 ~L~~~G~~~-v~~l~GG~~~W~~~  288 (296)
                      .|+.+||+| |++|+||+.+|...
T Consensus        85 ~L~~~G~~~~v~~l~gG~~~W~~~  108 (109)
T cd01533          85 SLINAGLPNPVAALRNGTQGWTLA  108 (109)
T ss_pred             HHHHCCCCcceeEecCCHHHHHhc
Confidence            999999998 99999999999864

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=1e-22  Score=153.41  Aligned_cols=96  Identities=24%  Similarity=0.465  Sum_probs=81.2

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc--CCCCCCCcEEEEeCCChhHHHHH
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQVA  264 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~--~~~~~~~~iv~~C~~G~rs~~aa  264 (296)
                      .++++++.+.+.+    ++..+||||++.||..||||||+|+|+..+......+.  ..++++++|||||.+|.||..++
T Consensus         3 ~is~~~l~~~~~~----~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~a~   78 (101)
T cd01518           3 YLSPAEWNELLED----PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIRCEKAS   78 (101)
T ss_pred             cCCHHHHHHHHcC----CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchhHHHHH
Confidence            4778888888864    36789999999999999999999999987654211111  12378999999999999999999


Q ss_pred             HHHHHcCCCceEEccchHHHhh
Q 022496          265 QWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       265 ~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      .+|+.+||+||++|+||+.+|.
T Consensus        79 ~~L~~~G~~~v~~l~GG~~~W~  100 (101)
T cd01518          79 AYLKERGFKNVYQLKGGILKYL  100 (101)
T ss_pred             HHHHHhCCcceeeechhHHHHh
Confidence            9999999999999999999996

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=99.87  E-value=3.3e-22  Score=154.56  Aligned_cols=93  Identities=29%  Similarity=0.553  Sum_probs=83.1

Q ss_pred             CceEEEeeEeeccc---------hHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCccccccc-CCCCcHHHHHHHh
Q 022496           87 DREILVQHLLVKED---------DLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVR-KGQLVPEFEEVAF  155 (296)
Q Consensus        87 ~~~~~~~~Il~~~~---------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~-~~~l~~~~~~~~~  155 (296)
                      +++++++||+++.+         ++++|++|+++|+ +|++|++||++||+|+ ++.+||++||++ .+.++++|.+++|
T Consensus        13 ~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~-~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~   91 (117)
T PF13616_consen   13 PDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLK-SGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAF   91 (117)
T ss_dssp             --EEEEEEEEESS-----------HHHHHHHHHHHH-CTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHH
T ss_pred             cCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHH
Confidence            36899999999963         4889999999996 9999999999999998 699999999999 9999999999999


Q ss_pred             cCCCCcee-ceeecCcceEEEeehhh
Q 022496          156 TTPLNKVA-RCKTKFGWHLLQVLSER  180 (296)
Q Consensus       156 ~l~~G~vs-pv~~~~G~~Ii~v~~~~  180 (296)
                      .+++|++| |++++.|||||++.+++
T Consensus        92 ~l~~G~is~~v~s~~G~hIikv~drk  117 (117)
T PF13616_consen   92 SLKVGEISGPVESPNGYHIIKVTDRK  117 (117)
T ss_dssp             HS-TTECTCEEEETTEEEEEEEEEE-
T ss_pred             cCCCCCCCCeEEECCEEEEEEEEeeC
Confidence            99999998 89999999999998753

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=3.3e-22  Score=150.37  Aligned_cols=95  Identities=21%  Similarity=0.305  Sum_probs=80.7

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC----CCccCCCCCCCcEEEEeCCChhHHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITVKFDPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~----~~~~~~~~~~~~iv~~C~~G~rs~~a  263 (296)
                      ++++++.+++.++   ++.++||||++.||..||||||+|+|+..+....    ......++++++|||||.+|.||..+
T Consensus         1 is~~el~~~l~~~---~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~a   77 (100)
T cd01523           1 LDPEDLYARLLAG---QPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGSSQFV   77 (100)
T ss_pred             CCHHHHHHHHHcC---CCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCcHHHH
Confidence            4567888888764   3678999999999999999999999998775321    12234568899999999999999999


Q ss_pred             HHHHHHcCCCceEEccchHHHhh
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      +..|+.+||+ +++|.||+.+|.
T Consensus        78 a~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          78 AELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHcCce-eEEeCCcHHhhc
Confidence            9999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.85  E-value=1.7e-21  Score=145.14  Aligned_cols=94  Identities=27%  Similarity=0.395  Sum_probs=78.1

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  267 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L  267 (296)
                      ++++++.+++.++.  +...+||||++.||..||||||+|+|+..+......+..  .++++||+||.+|.||..++.+|
T Consensus         1 is~~~l~~~~~~~~--~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~rs~~aa~~L   76 (95)
T cd01534           1 IGAAELARWAAEGD--RTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGVRADMTASWL   76 (95)
T ss_pred             CCHHHHHHHHHcCC--CCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCChHHHHHHHH
Confidence            45678888886531  246799999999999999999999999887654332322  35789999999999999999999


Q ss_pred             HHcCCCceEEccchHHHhh
Q 022496          268 QTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       268 ~~~G~~~v~~l~GG~~~W~  286 (296)
                      ..+||+ |++|+||+.+|.
T Consensus        77 ~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          77 AQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHcCCE-EEEecCcHHHhc
Confidence            999998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.85  E-value=3.6e-21  Score=144.99  Aligned_cols=100  Identities=47%  Similarity=0.821  Sum_probs=83.5

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  267 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L  267 (296)
                      +++.++.+.+...  .....+||+|++.||..+|||||+|+|+..+......+.. .+++++||+||.+|.||..++.+|
T Consensus         2 i~~~~l~~~~~~~--~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l   78 (101)
T cd01528           2 ISVAELAEWLADE--REEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWL   78 (101)
T ss_pred             CCHHHHHHHHhcC--CCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHH
Confidence            5677888888753  1247899999999999999999999999887654333221 246899999999999999999999


Q ss_pred             HHcCCCceEEccchHHHhhhccC
Q 022496          268 QTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       268 ~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      .+.||++|++|+||+.+|...++
T Consensus        79 ~~~G~~~v~~l~GG~~~w~~~~~  101 (101)
T cd01528          79 LRQGFENVYNLQGGIDAWSLEVD  101 (101)
T ss_pred             HHcCCccEEEecCCHHHHhhhcC
Confidence            99999999999999999987653

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=9.2e-21  Score=142.16  Aligned_cols=96  Identities=27%  Similarity=0.475  Sum_probs=84.0

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++++++.+.+..     +..+||+|++.||..||||||+|+|+.++....    ..++++++||+||.+|.||..++.
T Consensus         2 ~~i~~~el~~~~~~-----~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~----~~~~~~~~iv~~c~~g~~s~~~~~   72 (99)
T cd01527           2 TTISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESEG----LPLVGANAIIFHCRSGMRTQQNAE   72 (99)
T ss_pred             CccCHHHHHHHHHC-----CCEEEECCCHHHHHhCcCCCCEECChhHhcccc----cCCCCCCcEEEEeCCCchHHHHHH
Confidence            35788889888875     368999999999999999999999999886532    236789999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      .|.++||.||++|+||+.+|.....
T Consensus        73 ~L~~~g~~~v~~l~gG~~~W~~~~~   97 (99)
T cd01527          73 RLAAISAGEAYVLEGGLDAWKAAGL   97 (99)
T ss_pred             HHHHcCCccEEEeeCCHHHHHHCcC
Confidence            9999999999999999999997644

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.85  E-value=3.3e-21  Score=145.83  Aligned_cols=103  Identities=29%  Similarity=0.489  Sum_probs=84.9

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC----CCccC-----CCCCCCcEEEEeCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITV-----KFDPQKDTYVMCHH  256 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~----~~~~~-----~~~~~~~iv~~C~~  256 (296)
                      ..++.+++++++..+    +..+||||+++||..||+|.++|||+..-....    .++..     .-+.++.|||+|.+
T Consensus        23 ~sv~~~qvk~L~~~~----~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S   98 (136)
T KOG1530|consen   23 QSVSVEQVKNLLQHP----DVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS   98 (136)
T ss_pred             EEEEHHHHHHHhcCC----CEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence            457788899999874    589999999999999999999999996543321    12211     11457799999999


Q ss_pred             ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          257 GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       257 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      |.||..|...|..+||+||.+|.|||.+|.....|.
T Consensus        99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~  134 (136)
T KOG1530|consen   99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK  134 (136)
T ss_pred             CcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence            999999999999999999999999999999876654

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=99.84  E-value=1.6e-21  Score=170.71  Aligned_cols=128  Identities=23%  Similarity=0.456  Sum_probs=101.9

Q ss_pred             ccCchhhcc-cccCCCCCCCCCCCceEEEeeEeeccc------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcc
Q 022496           65 SFTSPKAAS-FSSGTEGSSPGGGDREILVQHLLVKED------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGM  137 (296)
Q Consensus        65 ~~~~~e~~~-~~~~~~~i~~~~~~~~~~~~~Il~~~~------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~  137 (296)
                      .+++.|... |....   .....+..++++||+++.+      ++++|++|+++|++++.+|+++|++||+|+++.+||+
T Consensus       101 ~ise~ei~~yy~~~~---~~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGd  177 (256)
T TIGR02933       101 QPDDADVEAWYRRHA---EQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGL  177 (256)
T ss_pred             CCCHHHHHHHHHHHH---HhcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCc
Confidence            455655543 44333   2333456778999999853      3566889999997445799999999999998899999


Q ss_pred             cccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496          138 LGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ  198 (296)
Q Consensus       138 lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~  198 (296)
                      |||++.++|+|+|.+++++|++|++| ||.+++||||+++.++++.   ...+.++++..+.
T Consensus       178 lG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~~~~~---~~~~~eevk~~I~  236 (256)
T TIGR02933       178 LGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEAIRPA---RPLTLEEALPRAR  236 (256)
T ss_pred             cCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEeeecCC---CCCCHHHHHHHHH
Confidence            99999999999999999999999999 7999999999999998775   3356666655554

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.84  E-value=7.3e-21  Score=145.06  Aligned_cols=99  Identities=31%  Similarity=0.546  Sum_probs=87.0

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  264 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa  264 (296)
                      .+.++++++.+.+.+.    ...+||+|++.||..||||||+|+|+..|..+.    ..++++++|+|||.+|.+|..++
T Consensus         4 ~~~is~~el~~~l~~~----~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~~----~~~~~~~~ivv~c~~g~~s~~a~   75 (108)
T PRK00162          4 FECINVEQAHQKLQEG----GAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFM----RQADFDTPVMVMCYHGNSSQGAA   75 (108)
T ss_pred             ccccCHHHHHHHHHcC----CCEEEEcCCHHHHhcCCCCCCeECCHHHHHHHH----HhcCCCCCEEEEeCCCCCHHHHH
Confidence            3568899999988653    578999999999999999999999998876543    23578999999999999999999


Q ss_pred             HHHHHcCCCceEEccchHHHhhhccCC
Q 022496          265 QWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       265 ~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ..|+..||+||++|+||+.+|.....|
T Consensus        76 ~~L~~~G~~~v~~l~GG~~~w~~~~~~  102 (108)
T PRK00162         76 QYLLQQGFDVVYSIDGGFEAWRRTFPA  102 (108)
T ss_pred             HHHHHCCchheEEecCCHHHHHhcCCC
Confidence            999999999999999999999987655

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=99.84  E-value=1.3e-20  Score=139.49  Aligned_cols=89  Identities=39%  Similarity=0.709  Sum_probs=82.5

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCcee-cee
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK  166 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~  166 (296)
                      .++.++||++..  +++|++++++|+ .|.+|+++|++||+++++..||+|||+..++++++|.++++.|++|++| |++
T Consensus         3 ~~~~~~~I~~~~--~~~A~~i~~~l~-~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~   79 (93)
T PRK15441          3 KTAAALHILVKE--EKLALDLLEQIK-NGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLH   79 (93)
T ss_pred             CceEEEEEEECC--HHHHHHHHHHHH-CCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCCcEE
Confidence            468999999985  455999999996 8899999999999998778899999999999999999999999999999 899


Q ss_pred             ecCcceEEEeehh
Q 022496          167 TKFGWHLLQVLSE  179 (296)
Q Consensus       167 ~~~G~~Ii~v~~~  179 (296)
                      ++.||||++++++
T Consensus        80 t~~G~hIlkv~~r   92 (93)
T PRK15441         80 TQFGYHIIKVLYR   92 (93)
T ss_pred             cCCEEEEEEEEec
Confidence            9999999999875

>PLN02160 thiosulfate sulfurtransferase

Probab=99.83  E-value=2e-20  Score=148.28  Aligned_cols=100  Identities=23%  Similarity=0.353  Sum_probs=82.2

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCc--eecccccccCCCCC---------ccCCCCCCCcEEEEe
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGF--QVLPLRQFGSWGPD---------ITVKFDPQKDTYVMC  254 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA--~~ip~~~l~~~~~~---------~~~~~~~~~~iv~~C  254 (296)
                      ..++.+++...+.+     +..+||||++.||..||||||  +|+|+..+... ..         +...++++++|||||
T Consensus        15 ~~i~~~e~~~~~~~-----~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-~~l~~~~~~~~~~~~~~~~~~IivyC   88 (136)
T PLN02160         15 VSVDVSQAKTLLQS-----GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-GRVKNQEFLEQVSSLLNPADDILVGC   88 (136)
T ss_pred             eEeCHHHHHHHHhC-----CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-cccCCHHHHHHHHhccCCCCcEEEEC
Confidence            45778888888865     357999999999999999999  89997543210 11         112247889999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          255 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       255 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ++|.||..++..|...||++|++|.|||.+|.....|
T Consensus        89 ~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p  125 (136)
T PLN02160         89 QSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFP  125 (136)
T ss_pred             CCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCC
Confidence            9999999999999999999999999999999987665

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=3e-20  Score=140.80  Aligned_cols=96  Identities=17%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCC--------CCCcEEEEeCCChh
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD--------PQKDTYVMCHHGMR  259 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~--------~~~~iv~~C~~G~r  259 (296)
                      ++.+++.+.+.+.  .++..+||+|++.||..||||||+|+|+..+......+ ..++        ++++||+||.+|.+
T Consensus         1 is~~~l~~~l~~~--~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~vv~~c~~g~~   77 (105)
T cd01525           1 ISVYDVIRLLDNS--PAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGEL-EQLPTVPRLENYKGKIIVIVSHSHKH   77 (105)
T ss_pred             CCHHHHHHHHhCC--CCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccc-ccccchHHHHhhcCCeEEEEeCCCcc
Confidence            4677888888653  12578999999999999999999999998764321111 1122        48899999999999


Q ss_pred             HHHHHHHHHHcCCCceEEccchHHHhh
Q 022496          260 SLQVAQWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       260 s~~aa~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      |..++..|+..||+||++|+||+.+|+
T Consensus        78 s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          78 AALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            999999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=3.2e-20  Score=140.89  Aligned_cols=95  Identities=27%  Similarity=0.399  Sum_probs=77.4

Q ss_pred             CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC----Ccc-----CCCCCCCcEEEEeCCChh
Q 022496          189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----DIT-----VKFDPQKDTYVMCHHGMR  259 (296)
Q Consensus       189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~----~~~-----~~~~~~~~iv~~C~~G~r  259 (296)
                      +.+++.+.++..   ++..+||+|++.||..||||||+|+|+..+.+...    .+.     ...+++++||+||++|.+
T Consensus         2 ~~~~~~~~l~~~---~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~   78 (106)
T cd01519           2 SFEEVKNLPNPH---PNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVR   78 (106)
T ss_pred             cHHHHHHhcCCC---CCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHH
Confidence            456677777511   36889999999999999999999999987643210    010     123678999999999999


Q ss_pred             HHHHHHHHHHcCCCceEEccchHHHhh
Q 022496          260 SLQVAQWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       260 s~~aa~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      |..++..|..+||+||++|+||+.+|.
T Consensus        79 s~~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          79 SKAAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHHHHHHHHHcCCccceecCCcHHHHc
Confidence            999999999999999999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=4e-20  Score=137.74  Aligned_cols=92  Identities=33%  Similarity=0.526  Sum_probs=81.0

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHh--hCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL--SSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~--ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      +++.++.+.+.++   .+..+||+|++.+|..  ||||||+|+|+..+....    ..++++++|||||.+|.+|..++.
T Consensus         2 i~~~~~~~~~~~~---~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~----~~~~~~~~ivv~c~~g~~s~~a~~   74 (96)
T cd01444           2 ISVDELAELLAAG---EAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWL----GDLDRDRPVVVYCYHGNSSAQLAQ   74 (96)
T ss_pred             cCHHHHHHHHhcC---CCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHH----hhcCCCCCEEEEeCCCChHHHHHH
Confidence            5677787777653   3578999999999999  999999999999886543    346889999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhh
Q 022496          266 WLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      .|+..||+||++|+||+.+|.
T Consensus        75 ~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          75 ALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHcCCceEEEcCCCHHHhc
Confidence            999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=3.8e-20  Score=136.36  Aligned_cols=88  Identities=31%  Similarity=0.493  Sum_probs=77.2

Q ss_pred             CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHH
Q 022496          189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ  268 (296)
Q Consensus       189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~  268 (296)
                      +++++.+.+.     ++.++||+|++.+|..||||||+|+|..++..+.    ..++++++||+||.+|.+|..++..|+
T Consensus         2 ~~~e~~~~~~-----~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~~----~~~~~~~~vvl~c~~g~~a~~~a~~L~   72 (90)
T cd01524           2 QWHELDNYRA-----DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDRL----NELPKDKEIIVYCAVGLRGYIAARILT   72 (90)
T ss_pred             CHHHHHHHhc-----CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHHH----HhcCCCCcEEEEcCCChhHHHHHHHHH
Confidence            4667777773     3678999999999999999999999998876543    235788999999999999999999999


Q ss_pred             HcCCCceEEccchHHHhh
Q 022496          269 TQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       269 ~~G~~~v~~l~GG~~~W~  286 (296)
                      ..|| +|++|+||+.+|.
T Consensus        73 ~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          73 QNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HCCC-CEEEecCCHHHhc
Confidence            9999 8999999999997

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=2.6e-20  Score=146.40  Aligned_cols=95  Identities=31%  Similarity=0.452  Sum_probs=77.2

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC--------------------------CCcc
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------------------------PDIT  241 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~--------------------------~~~~  241 (296)
                      ++++++.+.+.+     +..+||||++.||..||||||+|||+..+....                          ..+.
T Consensus         1 ~s~~el~~~l~~-----~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (128)
T cd01520           1 ITAEDLLALRKA-----DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL   75 (128)
T ss_pred             CCHHHHHHHHhc-----CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHH
Confidence            456778887762     568999999999999999999999996532110                          0000


Q ss_pred             -----CCCCCCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          242 -----VKFDPQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       242 -----~~~~~~~~iv~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                           ..++++++||+||. +|.||..+++.|+.+|| +|++|+||+.+|...
T Consensus        76 ~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~~  127 (128)
T cd01520          76 NEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRKF  127 (128)
T ss_pred             HHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHhh
Confidence                 25789999999997 78999999999999999 699999999999864

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.81  E-value=7.4e-20  Score=138.03  Aligned_cols=97  Identities=25%  Similarity=0.480  Sum_probs=79.2

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHH-HhhCCCCceecccccccCCCCC----ccCCCCCCCcEEEEeCCChhHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPD----ITVKFDPQKDTYVMCHHGMRSLQ  262 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey-~~ghIpgA~~ip~~~l~~~~~~----~~~~~~~~~~iv~~C~~G~rs~~  262 (296)
                      ++.+++.+.+.+    .+.++||+|++.+| ..||||||+|+|+..+..+...    ....++++++|||||.+|.+|..
T Consensus         1 is~~el~~~~~~----~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGS----PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhC----CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCcHHH
Confidence            356777777765    36789999999998 5799999999998776432211    11236789999999999999999


Q ss_pred             HHHHHHHcCCCceEEccchHHHhhhc
Q 022496          263 VAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       263 aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      +++.|..+||+||+.|+||+.+|...
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~  102 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEA  102 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhc
Confidence            99999999999999999999999753

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=2.8e-20  Score=138.79  Aligned_cols=83  Identities=23%  Similarity=0.276  Sum_probs=71.2

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCc--cCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccch
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG  281 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~--~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG  281 (296)
                      ++..+||+|++.+|..||||||+|+|+..+......+  ....+++++||+||.+|.+|..++.+|+..||+||++|+||
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG   90 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG   90 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            4678999999999999999999999987765432221  11247889999999999999999999999999999999999


Q ss_pred             HHHhh
Q 022496          282 IHAYA  286 (296)
Q Consensus       282 ~~~W~  286 (296)
                      +.+|.
T Consensus        91 ~~~W~   95 (96)
T cd01529          91 TSAWV   95 (96)
T ss_pred             HHHhc
Confidence            99996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=99.80  E-value=1.8e-19  Score=138.67  Aligned_cols=90  Identities=26%  Similarity=0.500  Sum_probs=82.0

Q ss_pred             CceEEEeeEeeccc--------------------hHHHHHHHHHHHhcCC-ccHHHHHHhhCCCCcccCCcccccccCCC
Q 022496           87 DREILVQHLLVKED--------------------DLNLLSELQRRVSQGR-EDLSDLAVEHSICPSKGEGGMLGWVRKGQ  145 (296)
Q Consensus        87 ~~~~~~~~Il~~~~--------------------~~~~a~~i~~~l~~~g-~~F~~la~~~S~d~~~~~gG~lg~~~~~~  145 (296)
                      +++++++|||++..                    +++++++|+++|+ .| .+|+++|++||+++++.+||+|||+..++
T Consensus         3 ~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~-~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~   81 (115)
T PTZ00356          3 GDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIV-SGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ   81 (115)
T ss_pred             CcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHH-hCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence            58999999999842                    3568999999996 66 59999999999988888999999999999


Q ss_pred             CcHHHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496          146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  177 (296)
Q Consensus       146 l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~  177 (296)
                      ++|+|.++++.|++|++| ||++++||||+++.
T Consensus        82 L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~  114 (115)
T PTZ00356         82 MQKPFEDAAFALKVGEISDIVHTDSGVHIILRL  114 (115)
T ss_pred             cCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence            999999999999999999 89999999999875

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.80  E-value=1.6e-19  Score=134.49  Aligned_cols=87  Identities=29%  Similarity=0.514  Sum_probs=75.7

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCc----------cCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCC
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI----------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFR  273 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~----------~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~  273 (296)
                      ++..+||+|++.||..||||||+|+|+..+.......          ....+++++||+||.+|.+|..++..|+..||+
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999998876543211          234678999999999999999999999999999


Q ss_pred             ceEEccchHHHhhhccC
Q 022496          274 RVFNVSGGIHAYATKVD  290 (296)
Q Consensus       274 ~v~~l~GG~~~W~~~~~  290 (296)
                      +|++|+||+.+|.....
T Consensus        83 ~v~~l~GG~~~w~~~~~   99 (100)
T smart00450       83 NVYLLDGGYKEWSAAGP   99 (100)
T ss_pred             ceEEecCCHHHHHhcCC
Confidence            99999999999997654

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=7.1e-20  Score=142.33  Aligned_cols=101  Identities=19%  Similarity=0.317  Sum_probs=80.6

Q ss_pred             cCCCHHHHHHHhcCCC--CCCCcEEEecCChHHHHhhCCCCceecccc-cccCCCCCc--cCCCCCCCcEEEEeC-CChh
Q 022496          186 QDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDI--TVKFDPQKDTYVMCH-HGMR  259 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~--~~~~~~llDvR~~~ey~~ghIpgA~~ip~~-~l~~~~~~~--~~~~~~~~~iv~~C~-~G~r  259 (296)
                      ..++++++.+++.+..  ..++..+||||++.||..||||||+|+|+. .+.......  ...++++++|||||. +|.|
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~r   81 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKR   81 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCcccc
Confidence            3478889988886531  013578999999999999999999999986 454421110  012578999999997 9999


Q ss_pred             HHHHHHHHHHc------------CCCceEEccchHHHhh
Q 022496          260 SLQVAQWLQTQ------------GFRRVFNVSGGIHAYA  286 (296)
Q Consensus       260 s~~aa~~L~~~------------G~~~v~~l~GG~~~W~  286 (296)
                      |..++..|+..            ||.+|++|+|||.+|.
T Consensus        82 s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          82 GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            99999999985            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>PRK01415 hypothetical protein; Validated

Probab=99.80  E-value=9.6e-20  Score=156.66  Aligned_cols=102  Identities=19%  Similarity=0.375  Sum_probs=87.3

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCc--cCCCCCCCcEEEEeCCChhHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~--~~~~~~~~~iv~~C~~G~rs~~a  263 (296)
                      ..+++.++.+++++    ++.++||||++.||..||||||+|+|...|.+.....  ...++++++|++||.+|.||..+
T Consensus       112 ~~i~p~e~~~ll~~----~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiRs~kA  187 (247)
T PRK01415        112 EYIEPKDWDEFITK----QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIRCEKS  187 (247)
T ss_pred             cccCHHHHHHHHhC----CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChHHHHH
Confidence            55889999999976    4789999999999999999999999988775422111  12357899999999999999999


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +..|+++||+||+.|.||+.+|..+..+
T Consensus       188 a~~L~~~Gf~~Vy~L~GGi~~w~~~~~~  215 (247)
T PRK01415        188 TSLLKSIGYDEVYHLKGGILQYLEDTQN  215 (247)
T ss_pred             HHHHHHcCCCcEEEechHHHHHHHhccc
Confidence            9999999999999999999999986654

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=99.80  E-value=2.5e-19  Score=133.36  Aligned_cols=84  Identities=37%  Similarity=0.608  Sum_probs=76.7

Q ss_pred             eEeeccc--------hHHHHHHHHHHHhcCCcc-HHHHHHhhCCC-CcccCCcccccccCCCCcHHHHHHHhcCCCCcee
Q 022496           94 HLLVKED--------DLNLLSELQRRVSQGRED-LSDLAVEHSIC-PSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA  163 (296)
Q Consensus        94 ~Il~~~~--------~~~~a~~i~~~l~~~g~~-F~~la~~~S~d-~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs  163 (296)
                      |||++.+        ++++|++++++|+ .|.+ |+++|++||++ +++.+||++||+..++++++|.+++++|++|++|
T Consensus         1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~-~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs   79 (95)
T PF00639_consen    1 HILVKPPPSDEEKDAAKKKAEEIYEQLK-KGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVS   79 (95)
T ss_dssp             EEEEESTTSCCHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBE
T ss_pred             CEEEECCCchhhHHHHHHHHHHHHHHHH-hCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcC
Confidence            8999864        4788999999997 6655 99999999966 5999999999999999999999999999999999


Q ss_pred             -ceeecCcceEEEeeh
Q 022496          164 -RCKTKFGWHLLQVLS  178 (296)
Q Consensus       164 -pv~~~~G~~Ii~v~~  178 (296)
                       |+++..||||+++.+
T Consensus        80 ~pi~t~~G~~Ii~v~d   95 (95)
T PF00639_consen   80 KPIETDNGYHIIKVED   95 (95)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             CCEEECCEEEEEEEEC
Confidence             899999999999864

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.80  E-value=7.7e-20  Score=141.39  Aligned_cols=100  Identities=22%  Similarity=0.385  Sum_probs=81.8

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHH-hhCCCCceecccccccCCC------CCccCCCCCCCcEEEEeCCChhH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-LSSLPGFQVLPLRQFGSWG------PDITVKFDPQKDTYVMCHHGMRS  260 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~-~ghIpgA~~ip~~~l~~~~------~~~~~~~~~~~~iv~~C~~G~rs  260 (296)
                      +++.++.+++.+.   ++..+||||++.||+ .||||||+|+|+.++....      ..+...++++++||+||.+|.||
T Consensus         1 is~~el~~~l~~~---~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs   77 (117)
T cd01522           1 LTPAEAWALLQAD---PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRS   77 (117)
T ss_pred             CCHHHHHHHHHhC---CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccH
Confidence            4577888888763   368899999999999 9999999999998765321      01111236889999999999999


Q ss_pred             HHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          261 LQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       261 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      ..++..|+.+||+||+.|.||+.+|....+
T Consensus        78 ~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~  107 (117)
T cd01522          78 IAAAEAAAQAGFTNVYNVLEGFEGDLDAAG  107 (117)
T ss_pred             HHHHHHHHHCCCCeEEECcCceecCCCCCC
Confidence            999999999999999999999999965443

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=4.3e-19  Score=135.74  Aligned_cols=100  Identities=24%  Similarity=0.282  Sum_probs=84.0

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCCh--hHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGM--RSLQV  263 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~--rs~~a  263 (296)
                      ..++.+++.+.+.++.  +..++||+|++.+|..||||||+|+|...+..+   ....++++++|||||.+|.  +|..+
T Consensus         8 ~~~s~~el~~~l~~~~--~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~~   82 (110)
T cd01521           8 FETDCWDVAIALKNGK--PDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATKA   82 (110)
T ss_pred             eecCHHHHHHHHHcCC--CCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHHH
Confidence            4588899999887531  257899999999999999999999999887632   1234688999999999874  89999


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +..|+.+||+ |++|+||+.+|.....|
T Consensus        83 a~~l~~~G~~-v~~l~GG~~~W~~~g~~  109 (110)
T cd01521          83 ALKLAELGFP-VKEMIGGLDWWKREGYA  109 (110)
T ss_pred             HHHHHHcCCe-EEEecCCHHHHHHCCCC
Confidence            9999999995 99999999999986544

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.8e-19  Score=135.05  Aligned_cols=90  Identities=32%  Similarity=0.523  Sum_probs=80.4

Q ss_pred             CCcEEEecCChHHHHhhCCCC-ceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchH
Q 022496          204 KEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI  282 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpg-A~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~  282 (296)
                      +...++|||++.||..+|||| ++|+|..++........  ++++++|||||.+|.||..++..|+.+||++++++.||+
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~   96 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI   96 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence            478999999999999999999 99999999877533322  578999999999999999999999999999998999999


Q ss_pred             HHhhhccCCCCCC
Q 022496          283 HAYATKVDPSIPT  295 (296)
Q Consensus       283 ~~W~~~~~~~~~~  295 (296)
                      .+|..+..|..+.
T Consensus        97 ~~w~~~~~~~~~~  109 (110)
T COG0607          97 DAWKGAGLPLVRG  109 (110)
T ss_pred             HHHHhcCCCcccC
Confidence            9999988886553

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.79  E-value=3.2e-19  Score=165.18  Aligned_cols=106  Identities=34%  Similarity=0.607  Sum_probs=93.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+.++++   .+..+||+|++.||..||||||+|+|+..+...  .....++++++|||||++|.||..++.
T Consensus       287 ~~Is~~el~~~l~~~---~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~rS~~aa~  361 (392)
T PRK07878        287 STITPRELKEWLDSG---KKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGVRSAEALA  361 (392)
T ss_pred             CccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCChHHHHHHH
Confidence            568888999888754   357899999999999999999999999887541  122346889999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCCCCCCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDPSIPTY  296 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~~~~~~  296 (296)
                      .|++.||+||++|+||+.+|..+.++.+|.|
T Consensus       362 ~L~~~G~~~V~~L~GG~~~W~~~~~~~~p~~  392 (392)
T PRK07878        362 ALKKAGFSDAVHLQGGVVAWAKQVDPSLPMY  392 (392)
T ss_pred             HHHHcCCCcEEEecCcHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999998

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.79  E-value=3.7e-19  Score=137.69  Aligned_cols=94  Identities=20%  Similarity=0.361  Sum_probs=77.8

Q ss_pred             CHHHHHHHhcCCCCCCCcEEEecCChHHHHh-----------hCCCCceecccccccCCCCC---------ccC--CCCC
Q 022496          189 QPDELHKKMQDPNFHKEAQLIDVREPEEVAL-----------SSLPGFQVLPLRQFGSWGPD---------ITV--KFDP  246 (296)
Q Consensus       189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~-----------ghIpgA~~ip~~~l~~~~~~---------~~~--~~~~  246 (296)
                      ++.++.+.+++    .+..+||+|++.||..           ||||||+|+|+..+......         +..  .+++
T Consensus         2 s~~~l~~~l~~----~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (118)
T cd01449           2 TAEEVLANLDS----GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITP   77 (118)
T ss_pred             CHHHHHHhcCC----CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCC
Confidence            56677777754    3578999999999987           99999999999876542111         011  3468


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496          247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      +++||+||++|.+|..++..|+.+||+||++|+||+.+|.
T Consensus        78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence            9999999999999999999999999999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.79  E-value=1.4e-19  Score=135.67  Aligned_cols=81  Identities=25%  Similarity=0.360  Sum_probs=70.4

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      ....+||+|++.||..||||||+|+|+.++......+.  .+++++|||||.+|.||..++..|+++||++|+++ ||+.
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~   93 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAENA-GGIK   93 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHH
Confidence            45679999999999999999999999988765433322  25788999999999999999999999999999885 9999


Q ss_pred             Hhhh
Q 022496          284 AYAT  287 (296)
Q Consensus       284 ~W~~  287 (296)
                      +|..
T Consensus        94 ~~~~   97 (101)
T TIGR02981        94 DIAM   97 (101)
T ss_pred             Hhhh
Confidence            9985

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.79  E-value=6.9e-19  Score=137.04  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=80.7

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCCh-------HHHHhhCCCCceecccccccCCC----CCcc-----------CCCC
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREP-------EEVALSSLPGFQVLPLRQFGSWG----PDIT-----------VKFD  245 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~-------~ey~~ghIpgA~~ip~~~l~~~~----~~~~-----------~~~~  245 (296)
                      ++++++.+.+.+.    ...+||+|++       .+|..||||||+|+|+.++....    +.+.           ..++
T Consensus         2 i~~~~l~~~l~~~----~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (122)
T cd01448           2 VSPDWLAEHLDDP----DVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS   77 (122)
T ss_pred             cCHHHHHHHhCCC----CeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            5677888888652    5789999999       99999999999999998875421    1111           1357


Q ss_pred             CCCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          246 PQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       246 ~~~~iv~~C~~-G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      ++++|||||++ |.+|..++..|+.+||+||++|+|||.+|...
T Consensus        78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~  121 (122)
T cd01448          78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE  121 (122)
T ss_pred             CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence            89999999999 59999999999999999999999999999864

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.79  E-value=2.5e-19  Score=132.60  Aligned_cols=80  Identities=26%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC-CCCCcEEEEeCCChh--HHHHHHHHHHcCCCceEEccc
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-DPQKDTYVMCHHGMR--SLQVAQWLQTQGFRRVFNVSG  280 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~-~~~~~iv~~C~~G~r--s~~aa~~L~~~G~~~v~~l~G  280 (296)
                      ++..+||+|++.||..||||||+|+|...+....   ...+ +++++|||||.+|.+  |..++..|+..||++|++|+|
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~---~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~G   85 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELDA---WVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEG   85 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh---HhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccC
Confidence            3678999999999999999999999998764321   1112 358899999999987  689999999999999999999


Q ss_pred             hHHHhh
Q 022496          281 GIHAYA  286 (296)
Q Consensus       281 G~~~W~  286 (296)
                      |+.+|.
T Consensus        86 G~~~W~   91 (92)
T cd01532          86 GLQGWR   91 (92)
T ss_pred             CHHHHc
Confidence            999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>PRK07411 hypothetical protein; Validated

Probab=99.78  E-value=6e-19  Score=163.10  Aligned_cols=109  Identities=28%  Similarity=0.494  Sum_probs=91.3

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC-CccCCCCCCCcEEEEeCCChhHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP-DITVKFDPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~-~~~~~~~~~~~iv~~C~~G~rs~~a  263 (296)
                      ...++.+++.++++.+.  ++.++||||++.||..||||||+|+|+.++..... +....++++++||+||.+|.||..+
T Consensus       281 ~~~Is~~el~~~l~~~~--~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~RS~~a  358 (390)
T PRK07411        281 IPEMTVTELKALLDSGA--DDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGRSAKA  358 (390)
T ss_pred             cCccCHHHHHHHHhCCC--CCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHHHHHH
Confidence            35688889888886531  25689999999999999999999999988754211 1123356899999999999999999


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccCCCCCCC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY  296 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~~~  296 (296)
                      +..|+.+||++ +.|.||+.+|.++.+|++|.|
T Consensus       359 a~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p~y  390 (390)
T PRK07411        359 LGILKEAGIEG-TNVKGGITAWSREVDPSVPQY  390 (390)
T ss_pred             HHHHHHcCCCe-EEecchHHHHHHhcCCCCCCC
Confidence            99999999985 579999999999999999998

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.78  E-value=4.8e-19  Score=154.44  Aligned_cols=106  Identities=19%  Similarity=0.339  Sum_probs=86.1

Q ss_pred             cCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCC--CCCCCcEEEEeCCChhHH
Q 022496          186 QDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK--FDPQKDTYVMCHHGMRSL  261 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~--~~~~~~iv~~C~~G~rs~  261 (296)
                      ..+++.++.++++++.-  +++.++||||++.||+.||||||+|+|+.+|.++...+...  ..++++||+||.+|.||.
T Consensus       110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~  189 (257)
T PRK05320        110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGIRCE  189 (257)
T ss_pred             ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCHHHH
Confidence            45788888888765311  12478999999999999999999999998876543322211  127899999999999999


Q ss_pred             HHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          262 QVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       262 ~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|+.+|++.||+||+.|.||+.+|.++.+.
T Consensus       190 ~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~~~  219 (257)
T PRK05320        190 KAAIHMQEVGIDNVYQLEGGILKYFEEVGG  219 (257)
T ss_pred             HHHHHHHHcCCcceEEeccCHHHHHHhCCC
Confidence            999999999999999999999999987653

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.77  E-value=7.6e-19  Score=143.20  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=80.0

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChH----HHHhh---------CCCCceeccccc---ccCCCCC-cc------
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPE----EVALS---------SLPGFQVLPLRQ---FGSWGPD-IT------  241 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~----ey~~g---------hIpgA~~ip~~~---l~~~~~~-~~------  241 (296)
                      ...++.+++.+.+.++    +..+||||++.    ||..|         |||||+|+|+..   +...... +.      
T Consensus        35 ~~~vs~~el~~~l~~~----~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~~~  110 (162)
T TIGR03865        35 ARVLDTEAAQALLARG----PVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLERA  110 (162)
T ss_pred             ccccCHHHHHHHHhCC----CcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHHHh
Confidence            4678999999999764    57899999875    45444         999999999643   2221100 10      


Q ss_pred             CCCCCCCcEEEEeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          242 VKFDPQKDTYVMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       242 ~~~~~~~~iv~~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ...+++++||+||.+|. +|..+++.|+.+||+||++|+|||.+|..+..|
T Consensus       111 ~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~P  161 (162)
T TIGR03865       111 TGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLP  161 (162)
T ss_pred             cCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCC
Confidence            11268999999999996 899999999999999999999999999987654

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.77  E-value=6.5e-19  Score=132.68  Aligned_cols=80  Identities=25%  Similarity=0.383  Sum_probs=69.4

Q ss_pred             CcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496          205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA  284 (296)
Q Consensus       205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~  284 (296)
                      +-.+||+|++.||..||||||+|+|+.++......+.  .+++++||+||.+|.||..++..|.++||++|++ .||+.+
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~   96 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKD   96 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHH
Confidence            5579999999999999999999999988765433332  2567899999999999999999999999999987 699999


Q ss_pred             hhh
Q 022496          285 YAT  287 (296)
Q Consensus       285 W~~  287 (296)
                      |..
T Consensus        97 ~~~   99 (104)
T PRK10287         97 IAM   99 (104)
T ss_pred             Hhh
Confidence            974

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.76  E-value=5.5e-19  Score=135.10  Aligned_cols=96  Identities=31%  Similarity=0.569  Sum_probs=77.4

Q ss_pred             CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC------------CCccCCCCCCCcEEEEeCC
Q 022496          189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------PDITVKFDPQKDTYVMCHH  256 (296)
Q Consensus       189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~------------~~~~~~~~~~~~iv~~C~~  256 (296)
                      +++++.+.+.+    ....+||+|++.+|..||||||+|+|+..+....            ......++++++||+||.+
T Consensus         1 s~~el~~~l~~----~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~   76 (113)
T PF00581_consen    1 SPEELKEMLEN----ESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS   76 (113)
T ss_dssp             -HHHHHHHHTT----TTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred             CHHHHHhhhhC----CCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeec
Confidence            46788888843    4889999999999999999999999996651110            0111235788999999999


Q ss_pred             ChhHHHHHHH-----HHHcCCCceEEccchHHHhhhc
Q 022496          257 GMRSLQVAQW-----LQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       257 G~rs~~aa~~-----L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      |.++..++..     |..+||++|++|+|||.+|.++
T Consensus        77 ~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   77 GWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            9999888777     8889999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.76  E-value=1.3e-18  Score=155.91  Aligned_cols=102  Identities=21%  Similarity=0.489  Sum_probs=87.0

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc--CCCCCCCcEEEEeCCChhHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~--~~~~~~~~iv~~C~~G~rs~~a  263 (296)
                      ..++++++.+.+.+    ++.++||||++.||..||||||+|+|+..|.+....+.  ....++++||+||.+|.||..+
T Consensus       112 ~~is~~el~~~l~~----~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~a  187 (314)
T PRK00142        112 TYLKPKEVNELLDD----PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIRCEKA  187 (314)
T ss_pred             cccCHHHHHHHhcC----CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcHHHHH
Confidence            56888999888876    36899999999999999999999999998865322211  1235889999999999999999


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +.+|+.+||+||++|+|||.+|.+..++
T Consensus       188 a~~L~~~Gf~~V~~L~GGi~~w~~~~~~  215 (314)
T PRK00142        188 SAWMKHEGFKEVYQLEGGIITYGEDPET  215 (314)
T ss_pred             HHHHHHcCCCcEEEecchHHHHHHhhcc
Confidence            9999999999999999999999987664

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.76  E-value=6.4e-19  Score=135.43  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=79.6

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC--CCCCcEEEEeC-CChhHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCH-HGMRSLQ  262 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~--~~~~~iv~~C~-~G~rs~~  262 (296)
                      +.++.+++.+++..+.  +...+||||++ ||..||||||+|+|+..+......+....  +++++|||||. +|.||..
T Consensus         2 ~~is~~~l~~~~~~~~--~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~   78 (113)
T cd01531           2 SYISPAQLKGWIRNGR--PPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPS   78 (113)
T ss_pred             CcCCHHHHHHHHHcCC--CCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHH
Confidence            3477888888886531  24679999999 99999999999999998765443332222  56789999998 7789999


Q ss_pred             HHHHHHH--------cCCCceEEccchHHHhhh
Q 022496          263 VAQWLQT--------QGFRRVFNVSGGIHAYAT  287 (296)
Q Consensus       263 aa~~L~~--------~G~~~v~~l~GG~~~W~~  287 (296)
                      ++..|.+        .||.||++|+||+.+|..
T Consensus        79 aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~  111 (113)
T cd01531          79 AARKFLRYLDEEDLETSKFEVYVLHGGFNAWES  111 (113)
T ss_pred             HHHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence            9888754        499999999999999986

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=99.76  E-value=1.1e-18  Score=154.98  Aligned_cols=102  Identities=26%  Similarity=0.540  Sum_probs=88.6

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ce
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RC  165 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv  165 (296)
                      ++++++||+++.+  +.|+.++.+|+ +|.+|+++|++||.|+ ++.+||++||+..+.++|+|.++++.|++|++| ||
T Consensus       135 ~~~~~~~Ilv~~~--~~A~~i~~~l~-~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI  211 (285)
T PRK03002        135 PEIKASHILVSDE--NEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPV  211 (285)
T ss_pred             cceEEEEEEECCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcE
Confidence            4589999999954  45999999996 9999999999999997 678999999999999999999999999999999 79


Q ss_pred             eecCcceEEEeehhhhhhhhcCCCHHHHHHHh
Q 022496          166 KTKFGWHLLQVLSEREASLLQDIQPDELHKKM  197 (296)
Q Consensus       166 ~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L  197 (296)
                      ++++||||+++.+++..     .+.+++++.+
T Consensus       212 ~t~~G~hIikv~~~~~~-----~~~e~vk~~I  238 (285)
T PRK03002        212 KSPNGYHIIKLTDKKDL-----KPYDEVKDSI  238 (285)
T ss_pred             EECCEEEEEEEeecCCC-----CCHHHHHHHH
Confidence            99999999999987543     3344444444

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.75  E-value=1.7e-18  Score=126.64  Aligned_cols=81  Identities=36%  Similarity=0.617  Sum_probs=72.0

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      ++..+||+|++.+|..||||||+|+|+..+....  .....+++++||+||.+|.+|..++..|+..||.+|++|+||+.
T Consensus         9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~   86 (89)
T cd00158           9 EDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML   86 (89)
T ss_pred             CCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence            4789999999999999999999999998865531  12345789999999999999999999999999999999999999


Q ss_pred             Hhh
Q 022496          284 AYA  286 (296)
Q Consensus       284 ~W~  286 (296)
                      +|.
T Consensus        87 ~w~   89 (89)
T cd00158          87 AWK   89 (89)
T ss_pred             hcC
Confidence            995

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=99.75  E-value=3.6e-18  Score=152.39  Aligned_cols=92  Identities=22%  Similarity=0.389  Sum_probs=82.0

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCccccccc--CCCCcHHHHHHHhcCCCCce-e
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVR--KGQLVPEFEEVAFTTPLNKV-A  163 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~--~~~l~~~~~~~~~~l~~G~v-s  163 (296)
                      ++++++||+++++  +.|++++++|+ +|++|+++|++||.|+ ++.+||+|||+.  .++++|+|.++++.|++|++ |
T Consensus       143 ~~~~v~hIlv~~~--~~A~~v~~~l~-~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss  219 (298)
T PRK04405        143 PKVTVQHILVSKK--STAETVIKKLK-DGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTT  219 (298)
T ss_pred             hhEEEEEEEecCh--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccC
Confidence            6799999999854  55999999996 8999999999999997 678999999885  46899999999999999999 4


Q ss_pred             -ceeecCcceEEEeehhhhh
Q 022496          164 -RCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       164 -pv~~~~G~~Ii~v~~~~~~  182 (296)
                       ||++.+||||+++.++...
T Consensus       220 ~pv~t~~GyhIikv~~~~~~  239 (298)
T PRK04405        220 TPVKTTYGYEVIKMIKHPAK  239 (298)
T ss_pred             CCEEeCCeEEEEEEeecCCC
Confidence             8999999999999986543

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.74  E-value=5.4e-18  Score=148.45  Aligned_cols=99  Identities=22%  Similarity=0.310  Sum_probs=84.2

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHh----------hCCCCceecccccccCCCCCc---------c--CCCCC
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGPDI---------T--VKFDP  246 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~----------ghIpgA~~ip~~~l~~~~~~~---------~--~~~~~  246 (296)
                      .+.+.+...+...    ...+||+|++.+|..          ||||||+|+|+.++.+....+         .  ..+++
T Consensus       158 ~~~~~~~~~~~~~----~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~  233 (285)
T COG2897         158 VDATLVADALEVP----AVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP  233 (285)
T ss_pred             CCHHHHHHHhcCC----CeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence            5556677777663    667999999999988          999999999999988732211         1  25789


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      +++||+||++|.||+..+..|+.+|+.++++|+|||.+|.+..+
T Consensus       234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~  277 (285)
T COG2897         234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD  277 (285)
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence            99999999999999999999999999999999999999998766

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.74  E-value=3e-18  Score=137.19  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=74.3

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      .+..+||||++.+|..||||||+|+|...|...    ...++.+++|||||.+|.+|..++..|+..||++|++|+||+.
T Consensus        10 ~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~----l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~   85 (145)
T cd01535          10 GQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA----LEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA   85 (145)
T ss_pred             CCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH----HHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence            357899999999999999999999998887653    2335678999999999999999999999999999999999999


Q ss_pred             HhhhccCC
Q 022496          284 AYATKVDP  291 (296)
Q Consensus       284 ~W~~~~~~  291 (296)
                      +|.....|
T Consensus        86 aW~~~g~p   93 (145)
T cd01535          86 AWIAAGLP   93 (145)
T ss_pred             HHHHCCCC
Confidence            99987554

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-17  Score=127.82  Aligned_cols=92  Identities=32%  Similarity=0.549  Sum_probs=82.5

Q ss_pred             CCCceEEEeeEeeccc-------------------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCC
Q 022496           85 GGDREILVQHLLVKED-------------------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ  145 (296)
Q Consensus        85 ~~~~~~~~~~Il~~~~-------------------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~  145 (296)
                      ..+.+|+++||||+-.                   |..+++.+.+.|+++..+|.+||+++|++.++..||+||||.+++
T Consensus        50 ~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgq  129 (163)
T KOG3259|consen   50 GEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQ  129 (163)
T ss_pred             CCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCccccccccc
Confidence            4468899999999842                   456677788889866679999999999999999999999999999


Q ss_pred             CcHHHHHHHhcCCCCcee-ceeecCcceEEEe
Q 022496          146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQV  176 (296)
Q Consensus       146 l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v  176 (296)
                      |-++|++++|+|++|++| +|.|+.|+|||+.
T Consensus       130 Mqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R  161 (163)
T KOG3259|consen  130 MQKPFEDAAFALKVGEMSGIVDTDSGVHIIYR  161 (163)
T ss_pred             ccccchhhhhhcccccccCceecCCceEEEEe
Confidence            999999999999999999 7999999999974

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.73  E-value=1.6e-17  Score=131.99  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=78.1

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCCh--------HHHHh------------hCCCCceecccccccCCCCC---cc---
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREP--------EEVAL------------SSLPGFQVLPLRQFGSWGPD---IT---  241 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~--------~ey~~------------ghIpgA~~ip~~~l~~~~~~---~~---  241 (296)
                      ++.+++.+.+.....+++..+||+|..        .+|..            ||||||+|+|+..+......   ..   
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            356778887763211246899999976        88988            99999999998876432211   11   


Q ss_pred             ---------CCCCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496          242 ---------VKFDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       242 ---------~~~~~~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                               .+++++++||+||.+   |.+|..+++.|+.+||+||++|+||+.+|.
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence                     146789999999986   789999999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.73  E-value=2.5e-18  Score=132.13  Aligned_cols=100  Identities=22%  Similarity=0.363  Sum_probs=75.6

Q ss_pred             cCCCHHHHHHHhcCCC--CCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC--CCCCcEEEEeCC-ChhH
Q 022496          186 QDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHH-GMRS  260 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~--~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~--~~~~~iv~~C~~-G~rs  260 (296)
                      ..++++++.+++.++.  ..++..+||||++ ||..||||||+|+|+..+..+...+...+  .+.++||+||.+ |.||
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs   80 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRG   80 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCccc
Confidence            3478889999887631  0024689999999 99999999999999988765432222212  356799999996 6899


Q ss_pred             HHHHHHHHH----cCC--CceEEccchHHHhh
Q 022496          261 LQVAQWLQT----QGF--RRVFNVSGGIHAYA  286 (296)
Q Consensus       261 ~~aa~~L~~----~G~--~~v~~l~GG~~~W~  286 (296)
                      ..++.+|..    .||  .++++|+||+.+|.
T Consensus        81 ~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          81 PRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            888877554    465  78999999999996

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.73  E-value=6.9e-18  Score=158.03  Aligned_cols=115  Identities=18%  Similarity=0.296  Sum_probs=95.8

Q ss_pred             ccCchhhcccccCCCCCCCCCCCceEEEeeEeeccc----------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccC
Q 022496           65 SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGE  134 (296)
Q Consensus        65 ~~~~~e~~~~~~~~~~i~~~~~~~~~~~~~Il~~~~----------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~  134 (296)
                      .+++.|...|.....  ..+....+++++||+++.+          ++++|++|+.+|+ +|.+|+++|+.||+|+++.+
T Consensus       133 ~vs~~ei~~~~~~~~--~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~-~g~~F~~lA~~yS~~~~a~~  209 (413)
T PRK10770        133 TILPQEVDSLAKQIG--NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQAR-NGADFGKLAIAYSADQQALK  209 (413)
T ss_pred             CCCHHHHHHHHHHHH--hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCccccc
Confidence            455555544432211  2233458899999999733          4678999999996 89999999999999999999


Q ss_pred             CcccccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhh
Q 022496          135 GGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       135 gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~  182 (296)
                      ||+|||+..++|+|+|.+++++|++|++| |+++.+||||+++.++++.
T Consensus       210 gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~~~  258 (413)
T PRK10770        210 GGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE  258 (413)
T ss_pred             CCcCCccccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeeccc
Confidence            99999999999999999999999999999 8999999999999997753

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.73  E-value=1.1e-17  Score=151.16  Aligned_cols=99  Identities=19%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHH-----------HhhCCCCceecccccccCCCCCcc-----------CCCC
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPDIT-----------VKFD  245 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey-----------~~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~  245 (296)
                      ++.+++...+.+    ++..+||+|++.||           ..||||||+|+|+.++.+..+.+.           .+++
T Consensus       192 ~~~~~v~~~~~~----~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~  267 (320)
T PLN02723        192 WTLEQVKKNIED----KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGIS  267 (320)
T ss_pred             ecHHHHHHhhcC----CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCC
Confidence            567788877765    35789999999998           469999999999987655322111           1467


Q ss_pred             CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      ++++||+||.+|.||..++..|+.+||+||++|+|||.+|....+
T Consensus       268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~  312 (320)
T PLN02723        268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPD  312 (320)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCC
Confidence            899999999999999999999999999999999999999997543

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=99.72  E-value=2.1e-17  Score=146.74  Aligned_cols=91  Identities=35%  Similarity=0.566  Sum_probs=83.8

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ce
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RC  165 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv  165 (296)
                      ++++++||+++.+  +.|++++++|+ +|.+|+++|++||.|+ ++.+||++||+..++++|+|.+++|.|++|++| ||
T Consensus       133 ~~~~v~~Ilv~~e--~~A~~i~~~l~-~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi  209 (283)
T PRK02998        133 PEMKVSHILVKDE--KTAKEVKEKVN-NGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPV  209 (283)
T ss_pred             cceEEEEEEeCCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCce
Confidence            4599999999954  45999999996 9999999999999997 778999999999999999999999999999999 79


Q ss_pred             eecCcceEEEeehhhh
Q 022496          166 KTKFGWHLLQVLSERE  181 (296)
Q Consensus       166 ~~~~G~~Ii~v~~~~~  181 (296)
                      ++++||||+++.++..
T Consensus       210 ~t~~G~hIikv~~~~~  225 (283)
T PRK02998        210 KTTYGYHIIKVTDKKE  225 (283)
T ss_pred             EECCEEEEEEEeccCC
Confidence            9999999999998754

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=99.71  E-value=3.8e-17  Score=145.39  Aligned_cols=90  Identities=31%  Similarity=0.571  Sum_probs=83.6

Q ss_pred             eEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-cee
Q 022496           89 EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK  166 (296)
Q Consensus        89 ~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~  166 (296)
                      +++++||+++.++  .|++++++|+ +|.+|+++|++||.|+ ++.+||++||++.++++|+|.++++.|++|++| |++
T Consensus       132 ~v~~~hIlv~~~~--~A~~i~~~l~-~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~  208 (287)
T PRK03095        132 EIKASHILVKDEA--TAKKVKEELG-QGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVK  208 (287)
T ss_pred             cEEEEEEEeCCHH--HHHHHHHHHH-CCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceE
Confidence            4999999999654  4899999996 8899999999999997 778999999999999999999999999999999 799


Q ss_pred             ecCcceEEEeehhhh
Q 022496          167 TKFGWHLLQVLSERE  181 (296)
Q Consensus       167 ~~~G~~Ii~v~~~~~  181 (296)
                      +++||||+++.++++
T Consensus       209 t~~G~hIikv~~~~~  223 (287)
T PRK03095        209 SQFGYHIIKVTDIKE  223 (287)
T ss_pred             ECCEEEEEEEeeecC
Confidence            999999999999875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.71  E-value=1.6e-17  Score=153.48  Aligned_cols=99  Identities=29%  Similarity=0.402  Sum_probs=85.2

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+.+.+     +..+||+|++.||..||||||+|+|+..+..+...+.  .+++++||+||.+|.||..+++
T Consensus         3 ~~is~~el~~~l~~-----~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~--~~~~~~IvvyC~~G~rs~~aa~   75 (376)
T PRK08762          3 REISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIPRGFLELRIETHL--PDRDREIVLICASGTRSAHAAA   75 (376)
T ss_pred             ceeCHHHHHHHHhC-----CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhhc--CCCCCeEEEEcCCCcHHHHHHH
Confidence            45788889888864     4789999999999999999999999988765433221  2689999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|+.+||+||++|+||+.+|.....|
T Consensus        76 ~L~~~G~~~v~~l~GG~~~W~~~g~p  101 (376)
T PRK08762         76 TLRELGYTRVASVAGGFSAWKDAGLP  101 (376)
T ss_pred             HHHHcCCCceEeecCcHHHHHhcCCc
Confidence            99999999999999999999977554

>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=6.8e-17  Score=117.26  Aligned_cols=91  Identities=29%  Similarity=0.603  Sum_probs=80.0

Q ss_pred             CCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCc---
Q 022496           85 GGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK---  161 (296)
Q Consensus        85 ~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~---  161 (296)
                      .....+.+||||-...-+  +.+.+++|+ +|..|.++|.+||+|+ +.+||+|||++++.|+-.|.+++|+|+++.   
T Consensus        35 gggtaVKvRHiLCEKqGK--i~EA~eKLk-~G~~F~evAA~YSEdk-ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~  110 (133)
T KOG3258|consen   35 GGGTAVKVRHILCEKQGK--INEAMEKLK-SGMKFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDK  110 (133)
T ss_pred             CCcceEEEEEeeehhhch--HHHHHHHHH-cccchHHHHHHhccCc-cccCCcccceeccccccchhhhhhcccccccCC
Confidence            455789999999975544  899999996 9999999999999998 788999999999999999999999999883   


Q ss_pred             ---ee-ceeecCcceEEEeehh
Q 022496          162 ---VA-RCKTKFGWHLLQVLSE  179 (296)
Q Consensus       162 ---vs-pv~~~~G~~Ii~v~~~  179 (296)
                         .+ ||+|.+|||||.+..+
T Consensus       111 pv~TdpP~KtkfGYHiImvEGr  132 (133)
T KOG3258|consen  111 PVYTDPPVKTKFGYHIIMVEGR  132 (133)
T ss_pred             ccccCCCcccccceEEEEeccc
Confidence               34 4899999999988653

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=99.67  E-value=4.7e-17  Score=148.38  Aligned_cols=106  Identities=26%  Similarity=0.414  Sum_probs=91.3

Q ss_pred             CceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccC--CCCcHHHHHHHhcCCCCcee
Q 022496           87 DREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRK--GQLVPEFEEVAFTTPLNKVA  163 (296)
Q Consensus        87 ~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~--~~l~~~~~~~~~~l~~G~vs  163 (296)
                      +.+++++||+++.+  +.|++++++++ .|.+|+++|++||.++ ++.+||++||++.  +.++|+|.++++.|++|++|
T Consensus       194 p~~~~v~~I~~~~~--~~a~~~~~~l~-~g~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs  270 (336)
T PRK00059        194 PNTMHLAHILVKTE--DEAKKVKKRLD-KGEDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEIS  270 (336)
T ss_pred             cceEEEEEEEecCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcC
Confidence            47899999999965  45999999996 8899999999999996 7889999999998  78999999999999999999


Q ss_pred             -ceeecCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496          164 -RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ  198 (296)
Q Consensus       164 -pv~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~  198 (296)
                       ||.++.||||+++.++.+.   ...+.+++++.+.
T Consensus       271 ~pi~~~~G~~i~~v~~~~~~---~~~~~~~vk~~i~  303 (336)
T PRK00059        271 APVKTQFGYHIIKAIKKKEY---PVKPFDSVKEDIK  303 (336)
T ss_pred             ccEecCCeEEEEEEEeeccC---CCCCHHHHHHHHH
Confidence             7999999999999998764   2344555555543

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.67  E-value=1.9e-16  Score=153.55  Aligned_cols=100  Identities=17%  Similarity=0.246  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHH--------hhCCCCceecccccccCCCCCc---------c--CCCCCC
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGPDI---------T--VKFDPQ  247 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~--------~ghIpgA~~ip~~~l~~~~~~~---------~--~~~~~~  247 (296)
                      .++.+++.+.+.+    ++..+||+|++.||.        .||||||+|+|+.++.+..+.+         .  .+++++
T Consensus       148 ~v~~e~v~~~l~~----~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~  223 (610)
T PRK09629        148 TATREYLQSRLGA----ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPD  223 (610)
T ss_pred             cccHHHHHHhhCC----CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            3677888888865    367899999999994        6999999999997654322111         1  146789


Q ss_pred             CcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       248 ~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      ++||+||.+|.||..++..|+.+||+||++|+|||.+|..+.+
T Consensus       224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~  266 (610)
T PRK09629        224 KEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPD  266 (610)
T ss_pred             CCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCC
Confidence            9999999999999999999999999999999999999997643

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.66  E-value=1.7e-16  Score=141.02  Aligned_cols=96  Identities=16%  Similarity=0.239  Sum_probs=77.8

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCCcc-----------CCCC
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFD  245 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~  245 (296)
                      .+.+++...+..    .+..+||+|++.||.           .||||||+|+|+.++... +.+.           .+++
T Consensus       155 ~~~~~v~~~~~~----~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~-~~~~~~~~l~~~~~~~g~~  229 (281)
T PRK11493        155 VRLTDVLLASHE----KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-GELKTTDELDAIFFGRGVS  229 (281)
T ss_pred             ecHHHHHHhhcC----CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC-CCcCCHHHHHHHHHhcCCC
Confidence            344555555544    257899999999995           699999999999887642 1111           1357


Q ss_pred             CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      ++++||+||++|.||..++..|+.+||+||++|+|||.+|...
T Consensus       230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~  272 (281)
T PRK11493        230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGAR  272 (281)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccC
Confidence            8999999999999999999999999999999999999999964

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.66  E-value=7.2e-17  Score=144.22  Aligned_cols=86  Identities=36%  Similarity=0.424  Sum_probs=68.1

Q ss_pred             CcEEEecCChHHHHhhCCCCceecccccccCCC------------------------------CCccCCCCCCCcEEEEe
Q 022496          205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------------------------PDITVKFDPQKDTYVMC  254 (296)
Q Consensus       205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~------------------------------~~~~~~~~~~~~iv~~C  254 (296)
                      ...+||||++.||..||||||+|+|+.+..+..                              ..+....++++.||+||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            457999999999999999999999996432110                              01111234556699999


Q ss_pred             C-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          255 H-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       255 ~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      . +|.||..++++|+.+|| +|++|+||+.+|...+.+
T Consensus        82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~  118 (311)
T TIGR03167        82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVID  118 (311)
T ss_pred             CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhh
Confidence            5 78999999999999999 699999999999987654

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.66  E-value=4.8e-16  Score=138.18  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCC----------hHHHHhhCCCCceecccccccCCCCC---cc------------
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVRE----------PEEVALSSLPGFQVLPLRQFGSWGPD---IT------------  241 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~----------~~ey~~ghIpgA~~ip~~~l~~~~~~---~~------------  241 (296)
                      .++.+++.+.+.+    ++..+||+|+          +.+|..||||||+|+|+..+......   +.            
T Consensus         6 lvs~~~l~~~l~~----~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T PRK11493          6 FVAADWLAEHIDD----PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRE   81 (281)
T ss_pred             ccCHHHHHHhcCC----CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            4778888888876    3688999996          68899999999999998776542211   11            


Q ss_pred             CCCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          242 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       242 ~~~~~~~~iv~~C~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      .+++++++||+||.+|.+ +..+++.|...||+||++|+||+.+|..+..
T Consensus        82 ~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~  131 (281)
T PRK11493         82 LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDL  131 (281)
T ss_pred             cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCC
Confidence            135789999999998775 6678899999999999999999999987644

>PRK12450 foldase protein PrsA; Reviewed

Probab=99.63  E-value=2.2e-16  Score=141.81  Aligned_cols=102  Identities=12%  Similarity=0.117  Sum_probs=82.0

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCccccccc-CCCCcHHHHHHHhcCCCCcee-ce
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVR-KGQLVPEFEEVAFTTPLNKVA-RC  165 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~-~~~l~~~~~~~~~~l~~G~vs-pv  165 (296)
                      ++++++||++.  +++.|++++++|+..|++|+++|++||.|+  .+||++||.. .++|+|+|.+++|.|++|++| ||
T Consensus       147 ~~~~~~~I~~~--~~~~A~~i~~~l~~~G~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i  222 (309)
T PRK12450        147 PTMTAEIMQFE--KEEDAKAALEAVKAEGADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEII  222 (309)
T ss_pred             ccceeEEEEeC--CHHHHHHHHHHHHhcCCCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence            46889999997  455699999999635899999999999985  4588999876 457999999999999999998 45


Q ss_pred             ------eecCcceEEEeehhhhhhhhcCCCHHHHHHHh
Q 022496          166 ------KTKFGWHLLQVLSEREASLLQDIQPDELHKKM  197 (296)
Q Consensus       166 ------~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L  197 (296)
                            ++++|||||++.++...    ..+.++++..+
T Consensus       223 ~~~~pv~t~~GyhIikl~~~~~~----~~~~~~~k~~i  256 (309)
T PRK12450        223 TALDPATSKRTYHIIKVTKKATK----KADWKAYQKRL  256 (309)
T ss_pred             cCCCccccCCceEEEEEeccccc----CCCHHHHHHHH
Confidence                  68999999999998642    23444444443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.63  E-value=8.5e-16  Score=140.57  Aligned_cols=81  Identities=31%  Similarity=0.521  Sum_probs=71.7

Q ss_pred             CcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHH
Q 022496          205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA  284 (296)
Q Consensus       205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~  284 (296)
                      ...+||+|++.||..||||||+|+|+..+.....  ...++++++||+||.+|.||..++..|+..||+||++|+||+.+
T Consensus       274 ~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~--~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~  351 (355)
T PRK05597        274 GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN--PPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG  351 (355)
T ss_pred             CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc--cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence            5689999999999999999999999988765321  12357889999999999999999999999999999999999999


Q ss_pred             hhh
Q 022496          285 YAT  287 (296)
Q Consensus       285 W~~  287 (296)
                      |.+
T Consensus       352 W~~  354 (355)
T PRK05597        352 WLD  354 (355)
T ss_pred             Hhh
Confidence            975

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=99.62  E-value=8e-16  Score=138.30  Aligned_cols=103  Identities=13%  Similarity=0.204  Sum_probs=84.6

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccC-CCCcHHHHHHHhcCCCCcee-ce
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RC  165 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~-~~l~~~~~~~~~~l~~G~vs-pv  165 (296)
                      ++++++||++.  +++.|++++++|+++|++|+++|++||.  ++.+||+|||+.. +.++++|.+++|.|++|++| ||
T Consensus       144 ~~~~~~~I~~~--~~~~A~~i~~~l~~~G~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv  219 (310)
T PRK01326        144 PEVTAQIIRLD--NEDKAKSVLEEAKAEGADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVI  219 (310)
T ss_pred             ccccchhhhHh--hhHHHHHHHHHHHhCCCCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCce
Confidence            46899999887  4456999999996359999999999999  6789999999987 46889999999999999999 78


Q ss_pred             ee------cCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496          166 KT------KFGWHLLQVLSEREASLLQDIQPDELHKKMQ  198 (296)
Q Consensus       166 ~~------~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~  198 (296)
                      ++      .+|||||++.+++..    ..+.++++..+.
T Consensus       220 ~t~~~~~~~~GyhIikv~~~~~~----~~~~~evk~~i~  254 (310)
T PRK01326        220 SVLDPTAYQSKYYIVKVTKKTEK----KSDWKDYKKRLK  254 (310)
T ss_pred             ecCCCCcCCceEEEEEEeccCCC----CCCHHHHHHHHH
Confidence            87      689999999997642    234455544443

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.62  E-value=5.7e-16  Score=140.37  Aligned_cols=95  Identities=32%  Similarity=0.489  Sum_probs=73.0

Q ss_pred             HHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC---------C--------------Cc------
Q 022496          190 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---------P--------------DI------  240 (296)
Q Consensus       190 ~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~---------~--------------~~------  240 (296)
                      ..++.+.+.     ++..+||||++.||..||||||+|+|+.+..+..         +              .+      
T Consensus         5 ~~~~~~~~~-----~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~   79 (345)
T PRK11784          5 AQDFRALFL-----NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREE   79 (345)
T ss_pred             HHHHHHHHh-----CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHH
Confidence            445555543     3679999999999999999999999996432100         0              00      


Q ss_pred             -cCCCC-CCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          241 -TVKFD-PQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       241 -~~~~~-~~~~iv~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                       ...++ ++++||+||. +|.||..++++|..+|| +|++|+||+.+|+..+.
T Consensus        80 ~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~  131 (345)
T PRK11784         80 AWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI  131 (345)
T ss_pred             HHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence             01122 7899999995 88999999999999999 69999999999997554

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.61  E-value=2.3e-15  Score=146.07  Aligned_cols=101  Identities=17%  Similarity=0.254  Sum_probs=82.3

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC----CC---------cc--CCCCCCCcEE
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PD---------IT--VKFDPQKDTY  251 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~----~~---------~~--~~~~~~~~iv  251 (296)
                      .++.+++.+.+++.    +.++||+|++.+|..||||||+|+|+.......    +.         .+  .+++++++||
T Consensus        10 lIs~~eL~~~l~~~----~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VV   85 (610)
T PRK09629         10 VIEPNDLLERLDAP----ELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYV   85 (610)
T ss_pred             eecHHHHHHHhcCC----CEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Confidence            48889999999763    688999999999999999999999976431110    00         11  1357899999


Q ss_pred             EEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          252 VMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +||.+| .+|..+++.|+.+||++|++|+||+.+|..+..|
T Consensus        86 vYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p  126 (610)
T PRK09629         86 VYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALP  126 (610)
T ss_pred             EECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCc
Confidence            999977 5888999999999999999999999999987654

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.61  E-value=2.7e-15  Score=135.55  Aligned_cols=102  Identities=16%  Similarity=0.311  Sum_probs=80.7

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecC--------C-hHHHHhhCCCCceecccccccCCCCCcc---------------
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVR--------E-PEEVALSSLPGFQVLPLRQFGSWGPDIT---------------  241 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR--------~-~~ey~~ghIpgA~~ip~~~l~~~~~~~~---------------  241 (296)
                      ..++.+++...+.+    ++..|||+|        + ..+|..||||||+|+|+..+........               
T Consensus        22 ~lvs~~~L~~~l~~----~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~   97 (320)
T PLN02723         22 PVVSVDWLHANLRE----PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSA   97 (320)
T ss_pred             ceecHHHHHHHhcC----CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHH
Confidence            34788899998865    368899996        3 3789999999999999887655322211               


Q ss_pred             CCCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          242 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       242 ~~~~~~~~iv~~C~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      -++.++++|||||.+|.+ +..+++.|+.+||+||++|+||+.+|..+..|
T Consensus        98 ~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~p  148 (320)
T PLN02723         98 LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYD  148 (320)
T ss_pred             cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCC
Confidence            135688999999998864 56888999999999999999999999976543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.57  E-value=3.9e-15  Score=136.56  Aligned_cols=92  Identities=28%  Similarity=0.432  Sum_probs=75.4

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCC---CceecccccccCCCC--CccCCCCCCCcEEEEeCCChhHH
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGP--DITVKFDPQKDTYVMCHHGMRSL  261 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIp---gA~~ip~~~l~~~~~--~~~~~~~~~~~iv~~C~~G~rs~  261 (296)
                      .++.+++.+++.++    +..+||||++.||+.||||   ||+|||+.++.+...  .....++++ +|||||++|.||.
T Consensus       272 ~~~~~el~~~l~~~----~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~-~Ivv~C~sG~RS~  346 (370)
T PRK05600        272 RTDTTSLIDATLNG----SATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGD-NVVVYCASGIRSA  346 (370)
T ss_pred             ccCHHHHHHHHhcC----CeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCC-cEEEECCCChhHH
Confidence            46778888888763    4689999999999999998   699999998864310  112233455 9999999999999


Q ss_pred             HHHHHHHHcCCCc-eEEccchHH
Q 022496          262 QVAQWLQTQGFRR-VFNVSGGIH  283 (296)
Q Consensus       262 ~aa~~L~~~G~~~-v~~l~GG~~  283 (296)
                      .++..|+.+||++ |++|.||+.
T Consensus       347 ~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        347 DFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             HHHHHHHHcCCCCceEEeccccC
Confidence            9999999999996 999999985

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.57  E-value=1.4e-15  Score=131.17  Aligned_cols=161  Identities=18%  Similarity=0.332  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCc-eeceeecCcceEEEeehh
Q 022496          101 DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARCKTKFGWHLLQVLSE  179 (296)
Q Consensus       101 ~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~-vspv~~~~G~~Ii~v~~~  179 (296)
                      ..+.++.+++.|. .-..|+++.-+.|.....       .|.  .|--.+.+.+-+|-..+ +.|-...           
T Consensus        53 ~~e~~~~~~~~l~-a~~~f~~l~~K~s~~~~~-------pF~--r~kVk~kkEIV~lg~~ddv~p~~~v-----------  111 (308)
T COG1054          53 SAEAIEAYMAWLR-ADPGFADLRFKISEADEK-------PFW--RLKVKLKKEIVALGVEDDVDPLENV-----------  111 (308)
T ss_pred             CHHHHHHHHHHHH-hCcccccceeeeccccCC-------Ccc--eEEEeehhhheecCCCCCcCccccc-----------
Confidence            3556888888886 666888888777664311       011  01111223333443333 4432111           


Q ss_pred             hhhhhhcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCC--CCCCcEEEEeCCC
Q 022496          180 REASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHHG  257 (296)
Q Consensus       180 ~~~~~~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~--~~~~~iv~~C~~G  257 (296)
                           -.-+++.++.+++.+    ++.++||.|+..||+.||..||++.+..+|.+.+.+.....  -++++|+.||.+|
T Consensus       112 -----G~yl~p~~wn~~l~D----~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGG  182 (308)
T COG1054         112 -----GTYLSPKDWNELLSD----PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGG  182 (308)
T ss_pred             -----cCccCHHHHHHHhcC----CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCc
Confidence                 134788999999988    47999999999999999999999999999887655443322  3678999999999


Q ss_pred             hhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          258 MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       258 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|...+..+|+..||++||.|+||+..|.+++.+
T Consensus       183 IRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~  216 (308)
T COG1054         183 IRCEKASAWMKENGFKEVYHLEGGILKYLEDVGT  216 (308)
T ss_pred             eeehhhHHHHHHhcchhhhcccchHHHHhhhcCc
Confidence            9999999999999999999999999999987665

>PRK10788 periplasmic folding chaperone; Provisional

Probab=99.57  E-value=7e-15  Score=144.46  Aligned_cols=94  Identities=17%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee
Q 022496           85 GGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA  163 (296)
Q Consensus        85 ~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs  163 (296)
                      ..+++++++||+++.  ++.|++++++|+ +|++|+++|++||+|+ ++.+||+|||++.+.++++|.++++ +++|++|
T Consensus       266 ~~~e~~~~~~i~~~~--~~~A~~~~~~l~-~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs  341 (623)
T PRK10788        266 TQPERKRYSIIQTKT--EAEAKAVLDELK-KGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLS  341 (623)
T ss_pred             CChhheeeeEEEECC--HHHHHHHHHHHh-CCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcC
Confidence            345778999999984  555999999996 8999999999999997 8999999999999999999999988 5889999


Q ss_pred             -ceeecCcceEEEeehhhhh
Q 022496          164 -RCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       164 -pv~~~~G~~Ii~v~~~~~~  182 (296)
                       |+++.+||||+++.+..+.
T Consensus       342 ~pv~t~~G~~Iikv~~~~~~  361 (623)
T PRK10788        342 GVIKSSVGFLIVRLDDIQPA  361 (623)
T ss_pred             CcEEECCeEEEEEEEeeccC
Confidence             8999999999999987764

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.55  E-value=1.5e-14  Score=114.25  Aligned_cols=98  Identities=16%  Similarity=0.086  Sum_probs=75.3

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCC---C--------------CccCCCCCCCcE
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---P--------------DITVKFDPQKDT  250 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~---~--------------~~~~~~~~~~~i  250 (296)
                      +++.++.+.++..  +++..+||+|.+.+|..||||||+|+|+..+....   .              ..... .++++|
T Consensus         2 is~~~l~~~l~~~--~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~V   78 (132)
T cd01446           2 IDCAWLAALLREG--GERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRR-GESLAV   78 (132)
T ss_pred             cCHHHHHHHHhcC--CCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhc-CCCCeE
Confidence            6788888888753  13689999999999999999999999988643110   0              00011 157899


Q ss_pred             EEEeCCChh---------HHHHHHHHHH--cCCCceEEccchHHHhhhc
Q 022496          251 YVMCHHGMR---------SLQVAQWLQT--QGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       251 v~~C~~G~r---------s~~aa~~L~~--~G~~~v~~l~GG~~~W~~~  288 (296)
                      |+||.+|.+         +..++..|..  .|+.+|++|+||+.+|...
T Consensus        79 VvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          79 VVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            999998875         7777788877  4778999999999999874

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family

Probab=99.52  E-value=3.9e-14  Score=122.58  Aligned_cols=112  Identities=15%  Similarity=0.042  Sum_probs=90.0

Q ss_pred             ccCchhh-cccccCCCCCCCCCCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccC
Q 022496           65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRK  143 (296)
Q Consensus        65 ~~~~~e~-~~~~~~~~~i~~~~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~  143 (296)
                      .+++.|. +.|..+.   .....+.+|+++||+++.+ ...+++++++++ +|.+|+++|..++.... ..+|.+||++.
T Consensus       116 ~vse~ev~~~Y~~~~---~~f~~~~~~~~~hIlv~~~-~~~a~~~~~~l~-~g~~f~~la~~~~~~~~-~~~~~~~~~~~  189 (232)
T TIGR02925       116 KPSPEEAKSYFQEHP---QLFAERKLYNLQEIALPPD-MELLDELRAMVE-NGKPLEDILAWLKAKNV-PFNASSAARPA  189 (232)
T ss_pred             CCCHHHHHHHHHhCH---HhcCCCceEEEEEEEecCC-hhHHHHHHHHHh-cCCCHHHHHHHhhhcCc-ccccccccCch
Confidence            3444443 4455443   2334568899999999853 345899999996 99999999999886533 45778999999


Q ss_pred             CCCcHHHHHHHhcCCCCceeceeecCcceEEEeehhhhh
Q 022496          144 GQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       144 ~~l~~~~~~~~~~l~~G~vspv~~~~G~~Ii~v~~~~~~  182 (296)
                      ++++|+|.++++.|++|+++|+++.+||||+++.++.+.
T Consensus       190 ~~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv~~~~~~  228 (232)
T TIGR02925       190 EQLPAEILAVLAKLKPGAPLVVQGPNNVLILVLADAQPA  228 (232)
T ss_pred             hhCCHHHHHHHHhCCCCCeEEeecCCceEEEEEeccccC
Confidence            999999999999999999999999999999999887653

Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.46  E-value=7.1e-14  Score=122.48  Aligned_cols=108  Identities=27%  Similarity=0.491  Sum_probs=90.2

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC-CccCCC-CCCCcEEEEeCCChhHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP-DITVKF-DPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~-~~~~~~-~~~~~iv~~C~~G~rs~~a  263 (296)
                      ..++..+.++.++++   +...++|||++.+|+.+|+|+|+|||+.++..... .+...+ ...++|+|.|+.|+.|..|
T Consensus       317 ~Rvsv~d~k~il~~~---~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNdSQ~A  393 (427)
T KOG2017|consen  317 ERVSVTDYKRILDSG---AKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGNDSQRA  393 (427)
T ss_pred             hcccHHHHHHHHhcC---CCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCchHHH
Confidence            457777888888875   57799999999999999999999999999876543 111122 3567899999999999999


Q ss_pred             HHHHHHcCC-CceEEccchHHHhhhccCCCCCCC
Q 022496          264 AQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY  296 (296)
Q Consensus       264 a~~L~~~G~-~~v~~l~GG~~~W~~~~~~~~~~~  296 (296)
                      ++.|++.++ .+|+.+.||+.+|...++|++|.|
T Consensus       394 v~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP~Y  427 (427)
T KOG2017|consen  394 VRILREKFPDSSVRDVIGGLKAWAAKVDPNFPLY  427 (427)
T ss_pred             HHHHHhhCCchhhhhhhhHHHHHHHhcCcCCCCC
Confidence            999998644 468889999999999999999988

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.35  E-value=1.7e-12  Score=123.44  Aligned_cols=73  Identities=26%  Similarity=0.389  Sum_probs=65.1

Q ss_pred             CCcEEEecCChHHHHhhCCCC----ceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcc
Q 022496          204 KEAQLIDVREPEEVALSSLPG----FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVS  279 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpg----A~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~  279 (296)
                      ++..+||||++.||..|||||    |+|+|+..+...    ...++++++||+||.+|.||..+|..|+.+||+||++|.
T Consensus       406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----~~~l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~  481 (482)
T PRK01269        406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----FGDLDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR  481 (482)
T ss_pred             CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence            467899999999999999999    999999988653    233578999999999999999999999999999999875


Q ss_pred             c
Q 022496          280 G  280 (296)
Q Consensus       280 G  280 (296)
                      +
T Consensus       482 ~  482 (482)
T PRK01269        482 P  482 (482)
T ss_pred             C
Confidence            3

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.34  E-value=6.9e-12  Score=110.14  Aligned_cols=106  Identities=20%  Similarity=0.179  Sum_probs=80.5

Q ss_pred             CCCHHHHHHHhcCCCC-CCCcEEEecCCh--HHHHhhCCCCceecccccccCCCC----CccC-----------CCCCCC
Q 022496          187 DIQPDELHKKMQDPNF-HKEAQLIDVREP--EEVALSSLPGFQVLPLRQFGSWGP----DITV-----------KFDPQK  248 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~-~~~~~llDvR~~--~ey~~ghIpgA~~ip~~~l~~~~~----~~~~-----------~~~~~~  248 (296)
                      .++++.+.+.+..... ..+..+++++..  .+|..+|||||+++++........    .+.+           ++..+.
T Consensus        12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d~   91 (285)
T COG2897          12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRNDD   91 (285)
T ss_pred             EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence            4677777777765311 124555555555  899999999999999987655432    1111           467899


Q ss_pred             cEEEEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          249 DTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       249 ~iv~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      +||+|.. ++.-|+.+++.|+-+|++||++|+||+.+|..+..|.
T Consensus        92 tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~  136 (285)
T COG2897          92 TVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPL  136 (285)
T ss_pred             EEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCc
Confidence            9999996 5568889999999999999999999999999887763

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=5.4e-12  Score=110.89  Aligned_cols=108  Identities=17%  Similarity=0.168  Sum_probs=82.5

Q ss_pred             hhhcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCC---CCCcEEEEeC-C
Q 022496          183 SLLQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD---PQKDTYVMCH-H  256 (296)
Q Consensus       183 ~~~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~---~~~~iv~~C~-~  256 (296)
                      ..++.|+++.+..++....-  ...+++||+|-|.||.+|||+||+||+..+......-......   +...+||||. +
T Consensus       153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefS  232 (325)
T KOG3772|consen  153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFS  232 (325)
T ss_pred             ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeec
Confidence            44577999999999876322  2336789999999999999999999998876553221112222   3567999998 7


Q ss_pred             ChhHHHHHHHHHH------------cCCCceEEccchHHHhhhccC
Q 022496          257 GMRSLQVAQWLQT------------QGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       257 G~rs~~aa~~L~~------------~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      ..|...+|..|+.            +-|..+|+|+||+..|.....
T Consensus       233 q~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~  278 (325)
T KOG3772|consen  233 QERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYP  278 (325)
T ss_pred             cccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcc
Confidence            7999999999994            366789999999999986544

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=6.9e-12  Score=112.17  Aligned_cols=93  Identities=39%  Similarity=0.675  Sum_probs=82.6

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCC-----ccHHHHHHhhCCCCccc-CCcccccccCCCCcHHHHHHHhcCCCCc
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGR-----EDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNK  161 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g-----~~F~~la~~~S~d~~~~-~gG~lg~~~~~~l~~~~~~~~~~l~~G~  161 (296)
                      ++++.+||+++.++.  +.+++.+++ .+     .+|+++|++||.|++.. .||++||...+.++|+|.++++.+++|+
T Consensus       167 ~~~~~~~i~~~~~~~--a~~~~~~~~-~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~  243 (320)
T COG0760         167 TEVQARHILVKAEAK--AKEALALLK-KGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGE  243 (320)
T ss_pred             HHHhhcccccCchHh--HHHHHHHHH-hccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcc
Confidence            789999999997666  777777775 44     89999999999998655 5788899999999999999999999999


Q ss_pred             ee-ceeecCcceEEEeehhhhhh
Q 022496          162 VA-RCKTKFGWHLLQVLSEREAS  183 (296)
Q Consensus       162 vs-pv~~~~G~~Ii~v~~~~~~~  183 (296)
                      ++ |+++.+|||++++.++++..
T Consensus       244 ~~~pv~t~~g~~ii~v~~~~~~~  266 (320)
T COG0760         244 VSAPVKTSFGYHIIKVEKKRDAK  266 (320)
T ss_pred             cccccccchHHHHHHHHhhhhhh
Confidence            99 89999999999999888764

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.03  E-value=3.7e-10  Score=97.41  Aligned_cols=83  Identities=20%  Similarity=0.228  Sum_probs=71.3

Q ss_pred             CCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCCcc-----------CCCCCCCcEEEEeCCChhHH
Q 022496          204 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFDPQKDTYVMCHHGMRSL  261 (296)
Q Consensus       204 ~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~~~~~iv~~C~~G~rs~  261 (296)
                      ++...+|.|...+|.           .||||||+|+|+.++....+-+.           ..+..++++|+.|+.|..+.
T Consensus       171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~  250 (286)
T KOG1529|consen  171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS  250 (286)
T ss_pred             ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence            468899999988885           48999999999998876543332           13556899999999999999


Q ss_pred             HHHHHHHHcCCCceEEccchHHHhhh
Q 022496          262 QVAQWLQTQGFRRVFNVSGGIHAYAT  287 (296)
Q Consensus       262 ~aa~~L~~~G~~~v~~l~GG~~~W~~  287 (296)
                      ..+..|...| .+|.+|+|+|.+|.-
T Consensus       251 ~i~~al~r~g-~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  251 IIALALERSG-PDAKLYDGSWTEWAL  275 (286)
T ss_pred             HHHHHHHhcC-CCcceecccHHHHhh
Confidence            9999999999 789999999999996

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.6e-11  Score=91.92  Aligned_cols=93  Identities=11%  Similarity=-0.055  Sum_probs=75.3

Q ss_pred             cccccCCchhh-------------hhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCc
Q 022496            3 LRASQLASPVL-------------CAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTS   68 (296)
Q Consensus         3 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~   68 (296)
                      +|++||+.+-.             +--|+..+.-++-|++.+.++...|..| .++| |..+++.||+||+|.+++|-.+
T Consensus        55 Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~S-dCSSaKRGGDLG~fgrgqMqk~  133 (163)
T KOG3259|consen   55 VRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRS-DCSSAKRGGDLGFFGRGQMQKP  133 (163)
T ss_pred             eeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhc-ChhhhccCCccccccccccccc
Confidence            68999998762             2224445556678888888888889999 8887 9999999999999999999999


Q ss_pred             hhhcccccCCCCCCCCCCCceEEEeeEeec
Q 022496           69 PKAASFSSGTEGSSPGGGDREILVQHLLVK   98 (296)
Q Consensus        69 ~e~~~~~~~~~~i~~~~~~~~~~~~~Il~~   98 (296)
                      ||+|+|+++.||+|.++..  -..-||+..
T Consensus       134 FEdaafaL~~ge~SgiV~t--~SG~HiI~R  161 (163)
T KOG3259|consen  134 FEDAAFALKVGEMSGIVDT--DSGVHIIYR  161 (163)
T ss_pred             chhhhhhcccccccCceec--CCceEEEEe
Confidence            9999999999999999733  344566543

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.65  E-value=1.5e-07  Score=81.47  Aligned_cols=100  Identities=15%  Similarity=0.208  Sum_probs=75.7

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecC---------ChHHHHhhCCCCceecccccccCCCCCcc---------------CC
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGPDIT---------------VK  243 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR---------~~~ey~~ghIpgA~~ip~~~l~~~~~~~~---------------~~  243 (296)
                      ++..-+.+.+.+    ....+||..         ...||..-|||||.++.++.....-....               .+
T Consensus         7 v~~~~v~~~~~~----~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG   82 (286)
T KOG1529|consen    7 VSVKWVMENLGN----HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG   82 (286)
T ss_pred             cChHHHHHhCcC----CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence            455666666765    357788874         23578889999999998887643211110               14


Q ss_pred             CCCCCcEEEEeC--CCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          244 FDPQKDTYVMCH--HGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       244 ~~~~~~iv~~C~--~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ++.++.+|||.+  .|. -|..++++++-.|+++|.+|+||+..|++...|
T Consensus        83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~  133 (286)
T KOG1529|consen   83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGP  133 (286)
T ss_pred             CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCc
Confidence            578899999999  774 667999999999999999999999999987665

>PRK10788 periplasmic folding chaperone; Provisional

Probab=98.64  E-value=1.4e-07  Score=93.09  Aligned_cols=149  Identities=11%  Similarity=0.044  Sum_probs=98.8

Q ss_pred             cCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCCC-CceEEEeeEeeccc----
Q 022496           27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGG-DREILVQHLLVKED----  100 (296)
Q Consensus        27 ~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~~-~~~~~~~~Il~~~~----  100 (296)
                      +...+..| ..|+.+ ++||.|+.++.+||+|||+..+.++++++.+.| ..+|+||+|.. ...+|+-++.=..+    
T Consensus       287 ~~~~l~~G-~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs~pv~t~~G~~Iikv~~~~~~~~~  364 (623)
T PRK10788        287 VLDELKKG-ADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDDIQPAKVK  364 (623)
T ss_pred             HHHHHhCC-CCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcCCcEEECCeEEEEEEEeeccCCCC
Confidence            33445566 489999 999999999999999999999999999999988 47799998843 33344444332211    


Q ss_pred             -----------------h----HHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCC-----cHHHHHHH
Q 022496          101 -----------------D----LNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQL-----VPEFEEVA  154 (296)
Q Consensus       101 -----------------~----~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l-----~~~~~~~~  154 (296)
                                       +    ...++.+.+.+.++|.+|+++|+...-..     ...+|++.+..     .+++..++
T Consensus       365 ~~~evk~~I~~~l~~~ka~~~~~~~~~~l~~~~~~~~~~l~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~a  439 (623)
T PRK10788        365 PLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLASAEQAAGVKA-----VQTGWFSRDNVPAELNFKPVAQAI  439 (623)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHcCCeE-----EEcCCcCCCCCccccCCHHHHHHH
Confidence                             0    11233444444335678888887653221     11234443322     25688899


Q ss_pred             hcC-------CCCceec-eeec-CcceEEEeehhhhh
Q 022496          155 FTT-------PLNKVAR-CKTK-FGWHLLQVLSEREA  182 (296)
Q Consensus       155 ~~l-------~~G~vsp-v~~~-~G~~Ii~v~~~~~~  182 (296)
                      |..       ++|..|+ +... .||.++++.+..+.
T Consensus       440 F~~~v~~~~~~~g~~s~~i~~~~~~~~vv~v~~~~p~  476 (623)
T PRK10788        440 FNGGLVGENGAPGSNSDVITVDGDRAFVLRISEHKPE  476 (623)
T ss_pred             cChHhhhccccCCCCCCCEEEcCCEEEEEEEcccCcC
Confidence            984       4688884 7765 56888999887664

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=98.58  E-value=7.6e-09  Score=79.79  Aligned_cols=92  Identities=13%  Similarity=0.006  Sum_probs=68.6

Q ss_pred             ccccccCCchh---hhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeee-cccccCchhhccccc
Q 022496            2 MLRASQLASPV---LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSS   76 (296)
Q Consensus         2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~-~~~~~~~~e~~~~~~   76 (296)
                      .+|.+||+-+.   +...........+.+...+..| .+|+.+ ++||+|+.++.+||++||+. ...+.++|+.+.|.+
T Consensus        15 ~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G-~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~~l   93 (117)
T PF13616_consen   15 EVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSG-ADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAFSL   93 (117)
T ss_dssp             EEEEEEEEESS-----------HHHHHHHHHHHHCT-CCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHHHS
T ss_pred             eEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHHcC
Confidence            36788998886   3444444566677777777766 499999 99999999999999999999 999999999999999


Q ss_pred             CCCCCCCCC-CCceEEEee
Q 022496           77 GTEGSSPGG-GDREILVQH   94 (296)
Q Consensus        77 ~~~~i~~~~-~~~~~~~~~   94 (296)
                      ++|+||.+. .+.-+|+-+
T Consensus        94 ~~G~is~~v~s~~G~hIik  112 (117)
T PF13616_consen   94 KVGEISGPVESPNGYHIIK  112 (117)
T ss_dssp             -TTECTCEEEETTEEEEEE
T ss_pred             CCCCCCCeEEECCEEEEEE
Confidence            999998863 334444433

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=98.38  E-value=4.6e-08  Score=75.12  Aligned_cols=82  Identities=12%  Similarity=-0.040  Sum_probs=68.3

Q ss_pred             cccccCCchhhh--------------hccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccC
Q 022496            3 LRASQLASPVLC--------------AITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFT   67 (296)
Q Consensus         3 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~   67 (296)
                      +|++||+-+++.              +.+......++.+++.+..+...|+.+ ++||++ .++..+|++||+....+.+
T Consensus         6 ~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~-~~~~~gG~lG~~~~~~L~~   84 (115)
T PTZ00356          6 VRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDC-GSAAKGGDLGFFGRGQMQK   84 (115)
T ss_pred             EEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCC-chhhcCccceeEcccccCH
Confidence            688999988765              234455566778888777776689999 999987 5778999999999999999


Q ss_pred             chhhcccccCCCCCCCCC
Q 022496           68 SPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        68 ~~e~~~~~~~~~~i~~~~   85 (296)
                      +|..+.|.+++|+|+.|.
T Consensus        85 ~~~~a~~~L~~Geis~Pi  102 (115)
T PTZ00356         85 PFEDAAFALKVGEISDIV  102 (115)
T ss_pred             HHHHHHHcCCCCCCCCcE
Confidence            999999999999999874

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=98.37  E-value=2.3e-08  Score=74.15  Aligned_cols=73  Identities=8%  Similarity=-0.149  Sum_probs=66.8

Q ss_pred             hhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCC
Q 022496           13 LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        13 ~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~   85 (296)
                      +.+.++.....++.++..+..+...|+.+ ++||.+..++.+||.+||+..+.+.++++.+.|.+++|+||.|.
T Consensus         9 ~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~pi   82 (95)
T PF00639_consen    9 SDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSKPI   82 (95)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred             chhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCCCE
Confidence            56777777888889999888998779999 99999999999999999999999999999999999999999874

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.31  E-value=4.4e-07  Score=79.21  Aligned_cols=105  Identities=14%  Similarity=0.217  Sum_probs=76.7

Q ss_pred             hhhhhcCCCHHHHHHHhcCCCCC---CCcEEEecCChHHHHhhCCCCceecccccccCCCCCcc-CCCCCCCcEEEEeC-
Q 022496          181 EASLLQDIQPDELHKKMQDPNFH---KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VKFDPQKDTYVMCH-  255 (296)
Q Consensus       181 ~~~~~~~is~~ev~~~L~~~~~~---~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~-~~~~~~~~iv~~C~-  255 (296)
                      ....++.|+.+.++..++.. +.   .+.++||+|-+.||.+|||-+|+||.-.+-...  .+. .-+.--.-+|++|. 
T Consensus       237 k~Ds~~RIs~etlk~vl~g~-~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~~--~F~hkplThp~aLifHCEf  313 (427)
T COG5105         237 KSDSIQRISVETLKQVLEGM-YNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLGL--LFRHKPLTHPRALIFHCEF  313 (427)
T ss_pred             cccchhhcCHHHHHHHHhch-hhhhhhceeEEeecceeeecCceeeeeeecchHHHHHH--HHHhccccCceeEEEEeec
Confidence            34556778888888877643 22   236799999999999999999999975532110  111 11233567999998 


Q ss_pred             CChhHHHHHHHHHHc------------CCCceEEccchHHHhhhc
Q 022496          256 HGMRSLQVAQWLQTQ------------GFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       256 ~G~rs~~aa~~L~~~------------G~~~v~~l~GG~~~W~~~  288 (296)
                      +.+|+...|..|+..            -|+.|++|+||+...-..
T Consensus       314 SshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n  358 (427)
T COG5105         314 SSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN  358 (427)
T ss_pred             ccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence            779999999999874            457899999999876643

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=98.17  E-value=2.5e-07  Score=81.15  Aligned_cols=91  Identities=13%  Similarity=-0.053  Sum_probs=69.2

Q ss_pred             ccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCC
Q 022496            4 RASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS   82 (296)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~   82 (296)
                      |.+||+-+.++..........++++..+..|...|+.+ ++||.++ ++..||++||+..+.+.++|+.+.+.+++|+||
T Consensus       125 ~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~-sa~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS  203 (256)
T TIGR02933       125 LTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCP-TAMEGGLLGWVSRGLLYPQLDAALFQLAEGELS  203 (256)
T ss_pred             EEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCC-ccccCCccCCcCCCccChHHHHHHHcCCCCCcC
Confidence            57888877654433333444456666666666689999 9999998 778999999999999999999999999999999


Q ss_pred             CCCCCceEEEeeEee
Q 022496           83 PGGGDREILVQHLLV   97 (296)
Q Consensus        83 ~~~~~~~~~~~~Il~   97 (296)
                      +|...+  ..-||+.
T Consensus       204 ~Pi~s~--~G~hIlk  216 (256)
T TIGR02933       204 PPIESE--IGWHLLL  216 (256)
T ss_pred             CceeeC--CeEEEEE
Confidence            985332  3455554

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=2e-06  Score=63.02  Aligned_cols=64  Identities=11%  Similarity=0.012  Sum_probs=51.4

Q ss_pred             ccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCC----CCceEEEeeEeec
Q 022496           32 LSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGG----GDREILVQHLLVK   98 (296)
Q Consensus        32 ~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~----~~~~~~~~~Il~~   98 (296)
                      +++. .|..+ .+||+|.  ++.||+|||+.++.|+-+|.+++|+++.+.+..|.    ....-+-.||++.
T Consensus        61 k~G~-~F~evAA~YSEdk--ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImv  129 (133)
T KOG3258|consen   61 KSGM-KFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMV  129 (133)
T ss_pred             Hccc-chHHHHHHhccCc--cccCCcccceeccccccchhhhhhcccccccCCccccCCCcccccceEEEEe
Confidence            4554 79999 9999998  89999999999999999999999999987666551    1234456777663

>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A

Probab=98.07  E-value=2.4e-06  Score=65.38  Aligned_cols=88  Identities=23%  Similarity=0.322  Sum_probs=58.0

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhc-CCccHHHHHHhhCCCCcccCCcccccccC-CCCcHHHHHHHhcCCCCcee-c
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQ-GREDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-R  164 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~-~g~~F~~la~~~S~d~~~~~gG~lg~~~~-~~l~~~~~~~~~~l~~G~vs-p  164 (296)
                      ..+.+.+++++....  ++...+.++. .+.+|.+++..++.+.     ..++|... ..++++|.++++.|+.|++| |
T Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~s~~   93 (121)
T PF13145_consen   21 ERRIFQIIFFKAEDA--AEAAKALAKKKAGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEVSGP   93 (121)
T ss_dssp             EEEEEEEEEESSCCH--HHHHHHHHHHHCHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-EEEE
T ss_pred             ccEEEEEEEeCCHHH--HHHHHHHHhhcccchHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCeeee
Confidence            445566666665543  2333333321 3468888888776653     33345554 35788999999999999999 7


Q ss_pred             eeecCcceEEEeehhhhh
Q 022496          165 CKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       165 v~~~~G~~Ii~v~~~~~~  182 (296)
                      +.+..|||++++..+.+.
T Consensus        94 i~~~~~~~v~~v~~~~~~  111 (121)
T PF13145_consen   94 IESGNGYYVVKVKERNPA  111 (121)
T ss_dssp             EEETTEEEEEEEEEEEE-
T ss_pred             EEECCEEEEEEEEeecCC
Confidence            999999999999987764

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=98.04  E-value=1.6e-06  Score=63.96  Aligned_cols=81  Identities=4%  Similarity=-0.191  Sum_probs=60.1

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++.+||+-.-.        ...+.+++.+..| ..|+.+ ++||+++. +..+|++||+..+++.++|+.+.|.+++|+|
T Consensus         5 ~~~~~I~~~~~--------~~A~~i~~~l~~g-~~F~~la~~~S~~~~-~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~v   74 (93)
T PRK15441          5 AAALHILVKEE--------KLALDLLEQIKNG-ADFGKLAKKHSICPS-GKRGGDLGEFRQGQMVPAFDKVVFSCPVLEP   74 (93)
T ss_pred             eEEEEEEECCH--------HHHHHHHHHHHCC-CCHHHHHHHhCCCch-hhcCccceeecccccCHHHHHHHHhCCCCCc
Confidence            46677766422        2224455555666 589999 99999974 5689999999999999999999999999999


Q ss_pred             CCCC-CCceEEEe
Q 022496           82 SPGG-GDREILVQ   93 (296)
Q Consensus        82 ~~~~-~~~~~~~~   93 (296)
                      +.|. ...-+|+-
T Consensus        75 s~Pi~t~~G~hIl   87 (93)
T PRK15441         75 TGPLHTQFGYHII   87 (93)
T ss_pred             CCcEEcCCEEEEE
Confidence            9874 33334443

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=97.79  E-value=9.3e-06  Score=72.76  Aligned_cols=86  Identities=7%  Similarity=-0.025  Sum_probs=62.7

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeec--ccccCchhhcccccCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTE   79 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~--~~~~~~~e~~~~~~~~~   79 (296)
                      ++++||+-+..        ...+.+.+.+..| ..|+.+ ++||.|+.++.+||++||+..  ..++++|+.++|.+++|
T Consensus       145 ~~v~hIlv~~~--------~~A~~v~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~G  215 (298)
T PRK04405        145 VTVQHILVSKK--------STAETVIKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNG  215 (298)
T ss_pred             EEEEEEEecCh--------HHHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCC
Confidence            46677765422        1123344455666 489999 999999999999999998753  67899999999999999


Q ss_pred             CCC-CC-CCCceEEEeeEee
Q 022496           80 GSS-PG-GGDREILVQHLLV   97 (296)
Q Consensus        80 ~i~-~~-~~~~~~~~~~Il~   97 (296)
                      +|+ .| ..+.-+|+-.+.-
T Consensus       216 eiss~pv~t~~GyhIikv~~  235 (298)
T PRK04405        216 EYTTTPVKTTYGYEVIKMIK  235 (298)
T ss_pred             CccCCCEEeCCeEEEEEEee
Confidence            994 66 4445566655553

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=97.70  E-value=1.4e-05  Score=71.28  Aligned_cols=84  Identities=6%  Similarity=-0.031  Sum_probs=63.6

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++.+||+-+..+        ..+..++.+..|. .|+.+ ++||.++.++.+||++||+..+.+.++|+.+.|.+++|+|
T Consensus       133 v~~~hIlv~~~~--------~A~~i~~~l~~G~-~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~Gev  203 (287)
T PRK03095        133 IKASHILVKDEA--------TAKKVKEELGQGK-SFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEV  203 (287)
T ss_pred             EEEEEEEeCCHH--------HHHHHHHHHHCCC-CHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCc
Confidence            456777655332        1234555556674 89999 9999999999999999999999999999999999999999


Q ss_pred             CCCCC-CceEEEeeE
Q 022496           82 SPGGG-DREILVQHL   95 (296)
Q Consensus        82 ~~~~~-~~~~~~~~I   95 (296)
                      |+|.. +..+|+-++
T Consensus       204 S~pi~t~~G~hIikv  218 (287)
T PRK03095        204 SEPVKSQFGYHIIKV  218 (287)
T ss_pred             CCceEECCEEEEEEE
Confidence            99842 233444333

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=97.63  E-value=1.2e-05  Score=71.71  Aligned_cols=84  Identities=7%  Similarity=-0.010  Sum_probs=63.7

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++.+||+-+..        ...+.+++.+..|. .|+.+ ++||.++.++.+||++||+..+.+.++|+.++|.+++|+|
T Consensus       135 ~~v~~Ilv~~e--------~~A~~i~~~l~~G~-~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~Gev  205 (283)
T PRK02998        135 MKVSHILVKDE--------KTAKEVKEKVNNGE-DFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQV  205 (283)
T ss_pred             eEEEEEEeCCH--------HHHHHHHHHHHCCC-CHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCc
Confidence            35667765422        12244566666664 89999 9999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEeeEee
Q 022496           82 SPGGGDREILVQHLLV   97 (296)
Q Consensus        82 ~~~~~~~~~~~~~Il~   97 (296)
                      |+|...+  ...||+.
T Consensus       206 S~pi~t~--~G~hIik  219 (283)
T PRK02998        206 SEPVKTT--YGYHIIK  219 (283)
T ss_pred             CCceEEC--CEEEEEE
Confidence            9985332  3344444

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=97.52  E-value=2.3e-05  Score=69.81  Aligned_cols=74  Identities=8%  Similarity=-0.081  Sum_probs=59.4

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++++||+-+..+        ..+.++..+..| ..|+.+ ++||.++.++..||++||+..+.+.++|+.+.|.+++|++
T Consensus       137 ~~~~~Ilv~~~~--------~A~~i~~~l~~G-~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~Gev  207 (285)
T PRK03002        137 IKASHILVSDEN--------EAKEIKKKLDAG-ASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQI  207 (285)
T ss_pred             eEEEEEEECCHH--------HHHHHHHHHHCC-CCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCc
Confidence            356777655322        123445555566 589999 9999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 022496           82 SPGG   85 (296)
Q Consensus        82 ~~~~   85 (296)
                      |+|.
T Consensus       208 S~pI  211 (285)
T PRK03002        208 SNPV  211 (285)
T ss_pred             CCcE
Confidence            9984

>COG2603 Predicted ATPase [General function prediction only]

Probab=96.48  E-value=0.00071  Score=59.00  Aligned_cols=81  Identities=32%  Similarity=0.489  Sum_probs=57.4

Q ss_pred             CcEEEecCChHHHHhhCCCCceecccccccC---------C-C-------------CCccC-------CCCCCCcEEEEe
Q 022496          205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGS---------W-G-------------PDITV-------KFDPQKDTYVMC  254 (296)
Q Consensus       205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~---------~-~-------------~~~~~-------~~~~~~~iv~~C  254 (296)
                      +..++|||.|.||..|+.|+++|+|.-+=..         . .             +++..       .+-.+.++-++|
T Consensus        15 ~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~Gi~c   94 (334)
T COG2603          15 DTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPVGILC   94 (334)
T ss_pred             CCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCcceee
Confidence            6789999999999999999999998653110         0 0             00000       112345666668


Q ss_pred             C-CChhHHHHHHHH-HHcCCCceEEccchHHHhh
Q 022496          255 H-HGMRSLQVAQWL-QTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       255 ~-~G~rs~~aa~~L-~~~G~~~v~~l~GG~~~W~  286 (296)
                      . +|.||...+.+| ...|++ .--+.||..+.+
T Consensus        95 ~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          95 ARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             ccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            7 667999999999 778885 445689988765

>PRK12450 foldase protein PrsA; Reviewed

Probab=96.34  E-value=0.0019  Score=58.29  Aligned_cols=56  Identities=5%  Similarity=-0.162  Sum_probs=43.3

Q ss_pred             ccCCccc-cccCCchhH-HhhhhccCCCCCCCceeeee-cccccCchhhcccccCCCCCCCCC
Q 022496           26 LSSSSSL-SIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        26 ~~r~~~~-~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~-~~~~~~~~e~~~~~~~~~~i~~~~   85 (296)
                      .+.+.+. .| .+|+.+ ++||.++   ..+|++||.. ...|+++|+.++|.+++|+||++.
T Consensus       164 ~i~~~l~~~G-~dF~~lAk~~S~~~---~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i  222 (309)
T PRK12450        164 AALEAVKAEG-ADFAAIAKEKTIAA---DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEII  222 (309)
T ss_pred             HHHHHHHhcC-CCHHHHHHHhCCCc---ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence            3444444 35 489999 9999764   4578888865 347999999999999999999864

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=96.26  E-value=0.0041  Score=56.73  Aligned_cols=72  Identities=4%  Similarity=-0.228  Sum_probs=56.4

Q ss_pred             ccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeec--ccccCchhhcccccCCCCCCCCC-CCceEEEeeEe
Q 022496           24 LNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGSSPGG-GDREILVQHLL   96 (296)
Q Consensus        24 ~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~--~~~~~~~e~~~~~~~~~~i~~~~-~~~~~~~~~Il   96 (296)
                      .+.+++.+..|. .|+.+ ++||.++.++..+|++||...  +.+.+++..+.|.+++|+||+|. .+..+++-.+.
T Consensus       210 a~~~~~~l~~g~-~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~  285 (336)
T PRK00059        210 AKKVKKRLDKGE-DFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAI  285 (336)
T ss_pred             HHHHHHHHHCCC-CHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEE
Confidence            345555566675 99999 999999999999999999887  66788899999999999999884 33345554443

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=96.24  E-value=0.0041  Score=56.12  Aligned_cols=56  Identities=13%  Similarity=-0.001  Sum_probs=44.1

Q ss_pred             cCCccc-cccCCchhH-HhhhhccCCCCCCCceeeeeccc-ccCchhhcccccCCCCCCCCCC
Q 022496           27 SSSSSL-SIFQKPASF-ASFYKSLNPASNSNSFHIHIISR-SFTSPKAASFSSGTEGSSPGGG   86 (296)
Q Consensus        27 ~r~~~~-~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~-~~~~~e~~~~~~~~~~i~~~~~   86 (296)
                      +...+. .| ..|+.+ ++||.   ++.+||++||+..+. +.++|+.++|.+++|+||+|..
T Consensus       162 i~~~l~~~G-~dF~~lA~~~S~---s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~  220 (310)
T PRK01326        162 VLEEAKAEG-ADFAQIAKENTT---TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVIS  220 (310)
T ss_pred             HHHHHHhCC-CCHHHHHHHhCc---ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCcee
Confidence            333444 35 489999 99987   678899999987654 5557999999999999999864

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.0072  Score=53.62  Aligned_cols=79  Identities=9%  Similarity=-0.013  Sum_probs=58.7

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++++||+.+..+..+....    .++........+|..+ +++|.++.....|+.+||...+.++++|+.+.|.+++|++
T Consensus       169 ~~~~~i~~~~~~~a~~~~~----~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~  244 (320)
T COG0760         169 VQARHILVKAEAKAKEALA----LLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEV  244 (320)
T ss_pred             HhhcccccCchHhHHHHHH----HHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCccc
Confidence            5788888877755544331    1111100044689999 9999999877767788888899999999999999999999


Q ss_pred             CCCC
Q 022496           82 SPGG   85 (296)
Q Consensus        82 ~~~~   85 (296)
                      +.|.
T Consensus       245 ~~pv  248 (320)
T COG0760         245 SAPV  248 (320)
T ss_pred             cccc
Confidence            9863

>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family

Probab=94.48  E-value=0.011  Score=50.93  Aligned_cols=83  Identities=12%  Similarity=-0.076  Sum_probs=55.9

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      +|++||+-+.+++       ..+.++..+..+. .|..+ +.++. .+. ..++.+||+..+++.++|..+.+.+++|+|
T Consensus       139 ~~~~hIlv~~~~~-------~a~~~~~~l~~g~-~f~~la~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~a~~~l~~G~i  208 (232)
T TIGR02925       139 YNLQEIALPPDME-------LLDELRAMVENGK-PLEDILAWLKA-KNV-PFNASSAARPAEQLPAEILAVLAKLKPGAP  208 (232)
T ss_pred             EEEEEEEecCChh-------HHHHHHHHHhcCC-CHHHHHHHhhh-cCc-ccccccccCchhhCCHHHHHHHHhCCCCCe
Confidence            5677776543221       2344444444443 68888 66653 333 456788999999999999999999999999


Q ss_pred             CCCCCCceEEEeeE
Q 022496           82 SPGGGDREILVQHL   95 (296)
Q Consensus        82 ~~~~~~~~~~~~~I   95 (296)
                      +....+.-+|+-.+
T Consensus       209 s~v~s~~G~hiikv  222 (232)
T TIGR02925       209 LVVQGPNNVLILVL  222 (232)
T ss_pred             EEeecCCceEEEEE
Confidence            85555555655544

Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=92.16  E-value=0.0051  Score=55.59  Aligned_cols=82  Identities=11%  Similarity=0.078  Sum_probs=52.5

Q ss_pred             CHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCC--ChhH----HH
Q 022496          189 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHH--GMRS----LQ  262 (296)
Q Consensus       189 s~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~--G~rs----~~  262 (296)
                      +++++++.+..     ...++|+|....|+.+||||++|+|...+..+.+.+.. .+..+++++.-..  +...    ..
T Consensus        17 ~~~~~~~~l~~-----~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~~l~~~   90 (314)
T PRK00142         17 DPEAFRDEHLA-----LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA-DPRFADIRFKISEDDGHAFPRLSVK   90 (314)
T ss_pred             CHHHHHHHHHH-----HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh-CcCCCCceEEeccccCCCcccceee
Confidence            35667776664     45689999999999999999999999877766554443 1224444444322  2222    34


Q ss_pred             HHHHHHHcCCC-ceE
Q 022496          263 VAQWLQTQGFR-RVF  276 (296)
Q Consensus       263 aa~~L~~~G~~-~v~  276 (296)
                      +...|...|++ ++.
T Consensus        91 ~~~eLv~~G~d~~v~  105 (314)
T PRK00142         91 VRKEIVALGLDDDID  105 (314)
T ss_pred             eeeeeeecCCCCCCC
Confidence            55556666774 453

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=91.26  E-value=0.054  Score=51.74  Aligned_cols=81  Identities=11%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             CcEEEecCChHHHHhhCCCCceecccccccCCCCCc--cCC--CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccc
Q 022496          205 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVK--FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSG  280 (296)
Q Consensus       205 ~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~--~~~--~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~G  280 (296)
                      ...++|.|...||..+|+++++|+|+..-......+  ..+  -.+.++++++-....-++.....|..+-+..+.++++
T Consensus       634 ~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~  713 (725)
T KOG1093|consen  634 MLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWLRFLPGIVCSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHD  713 (725)
T ss_pred             HHHHHhHHHHHHHHHhhccccccCCccchHHHHHHhhcchHhHHhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHH
Confidence            456899999999999999999999998322111111  011  1245666666665556666666777777888888999


Q ss_pred             hHHHh
Q 022496          281 GIHAY  285 (296)
Q Consensus       281 G~~~W  285 (296)
                      |++..
T Consensus       714 ~~~~~  718 (725)
T KOG1093|consen  714 GFNNI  718 (725)
T ss_pred             HHhhc
Confidence            98843

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=87.25  E-value=0.73  Score=34.85  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=35.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh------------hCCCCceeccccc--ccC----CCCCccCCCCCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL------------SSLPGFQVLPLRQ--FGS----WGPDITVKFDPQ  247 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~------------ghIpgA~~ip~~~--l~~----~~~~~~~~~~~~  247 (296)
                      ..++++++..+-..+    =..+|+.|++.|-..            ..==..+++|+..  +..    .....+..  ..
T Consensus        13 ~Q~~~~d~~~la~~G----fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~--~~   86 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQG----FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES--LP   86 (110)
T ss_dssp             CS--HHHHHHHHHCT------EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT--TT
T ss_pred             CCCCHHHHHHHHHCC----CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh--CC
Confidence            457788888777654    346899997754210            0001234555442  100    00011122  35


Q ss_pred             CcEEEEeCCChhHHHHHHHH
Q 022496          248 KDTYVMCHHGMRSLQVAQWL  267 (296)
Q Consensus       248 ~~iv~~C~~G~rs~~aa~~L  267 (296)
                      +||.+||++|.||...|..-
T Consensus        87 ~Pvl~hC~sG~Ra~~l~~l~  106 (110)
T PF04273_consen   87 KPVLAHCRSGTRASALWALA  106 (110)
T ss_dssp             TSEEEE-SCSHHHHHHHHHH
T ss_pred             CCEEEECCCChhHHHHHHHH
Confidence            69999999999997766543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=84.90  E-value=0.79  Score=39.93  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCC--------CCCccCC------CC---CCCcE
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW--------GPDITVK------FD---PQKDT  250 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~--------~~~~~~~------~~---~~~~i  250 (296)
                      ++..++...+..+    +..++|+|+    +..||.+|+|+.+..+..+        ...+...      .+   +...+
T Consensus         6 ~s~~wlnr~l~~~----nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~v   77 (343)
T KOG1717|consen    6 KSVAWLNRQLELG----NLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTV   77 (343)
T ss_pred             HHHHHHHhhcccC----ceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCccee
Confidence            4455666666654    688999999    6679999998766544321        0011110      11   23578


Q ss_pred             EEEeCC--------ChhH--HHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          251 YVMCHH--------GMRS--LQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       251 v~~C~~--------G~rs--~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |.|+.+        |.-+  ......|+..|+. ++.|.||+.-+..+.++
T Consensus        78 ilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e~~~  127 (343)
T KOG1717|consen   78 ILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAEASE  127 (343)
T ss_pred             eecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhhhhh
Confidence            888875        2211  1223456667985 99999999877765543

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=84.77  E-value=1  Score=35.30  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhC----------CCC--ceeccccc--ccC----CCCCccCCCCCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS----------LPG--FQVLPLRQ--FGS----WGPDITVKFDPQ  247 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~gh----------Ipg--A~~ip~~~--l~~----~~~~~~~~~~~~  247 (296)
                      ..++.+++..+...+    =..+||.|++.|.....          -+|  .+++|+..  +..    ....++.  ..+
T Consensus        13 ~qlt~~d~~~L~~~G----iktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~--~~~   86 (135)
T TIGR01244        13 PQLTKADAAQAAQLG----FKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG--AAE   86 (135)
T ss_pred             CCCCHHHHHHHHHCC----CcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH--hCC
Confidence            346666666544332    34789999876532211          122  34555432  100    0001111  236


Q ss_pred             CcEEEEeCCChhHHHHHHHHH-HcCC
Q 022496          248 KDTYVMCHHGMRSLQVAQWLQ-TQGF  272 (296)
Q Consensus       248 ~~iv~~C~~G~rs~~aa~~L~-~~G~  272 (296)
                      ++|++||.+|.|+..++..+. ..|.
T Consensus        87 ~pvL~HC~sG~Rt~~l~al~~~~~g~  112 (135)
T TIGR01244        87 GPVLAYCRSGTRSSLLWGFRQAAEGV  112 (135)
T ss_pred             CCEEEEcCCChHHHHHHHHHHHHcCC
Confidence            899999999999987765433 3354

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
1jns_A	92	Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRA		1e-12
3iwh_A	103	Crystal Structure Of Rhodanese-Like Domain Protein		2e-09
3foj_A	100	Crystal Structure Of Ssp1007 From Staphylococcus Sa		5e-08
1yw5_A	177	Peptidyl-Prolyl Isomerase Ess1 From Candida Albican		3e-07
1gn0_A	108	Escherichia Coli Glpe Sulfurtransferase Soaked With		4e-06
1zk6_A	93	Nmr Solution Structure Of B. Subtilis Prsa Ppiase L		1e-05
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		1e-05
3rfw_A	252	The Virulence Factor Peb4 And The Periplasmic Prote		4e-05
1m5y_A	408	Crystallographic Structure Of Sura, A Molecular Cha		5e-05
3ui4_A	101	0.8 A Resolution Crystal Structure Of Human Parvuli		5e-05
1fjd_A	104	Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMER		5e-05
1qxn_A	137	Solution Structure Of The 30 Kda Polysulfide-Sulfur		5e-05
1gmx_A	108	Escherichia Coli Glpe Sulfurtransferase Length = 10		1e-04
1eq3_A	96	Nmr Structure Of Human Parvulin Hpar14 Length = 96		3e-04
4g2p_A	110	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		6e-04

>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS- Isomerase Parvulin 10 Length = 92

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 94  HLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 153
           H+LVKE+ L L  +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+VP F++V
Sbjct: 8   HILVKEEKLAL--DLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKV 64
Query: 154 AFTTP-LNKVARCKTKFGWHLLQVL 177
            F+ P L       T+FG+H+++VL
Sbjct: 65  VFSCPVLEPTGPLHTQFGYHIIKVL 89

>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From Staphylococcus Aureus Length = 103

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
           + I  DEL  K+ +    K  Q++DVR  EE A   +P  +++P        PD    F+
Sbjct: 2   KSITTDELKNKLLE---SKPVQIVDVRTDEETAXGYIPNAKLIPXDTI----PDNLNSFN 54
Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
             +  Y++C  G+RS +V ++L+  G   V NV GG HA+ 
Sbjct: 55  KNEIYYIVCAGGVRSAKVVEYLEANGIDAV-NVEGGXHAWG 94

>pdb|3FOJ|A Chain A, Crystal Structure Of Ssp1007 From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Target Syr101a Length = 100

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
           + I   EL +K+ D N      ++DVR  +E A   +PG + +P        PD    F+
Sbjct: 2   ESITVTELKEKILDAN---PVNIVDVRTDQETAXGIIPGAETIPXNSI----PDNLNYFN 54
Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
             +  Y++C  G RS QV Q+L+  G   V NV GG   + 
Sbjct: 55  DNETYYIICKAGGRSAQVVQYLEQNGVNAV-NVEGGXDEFG 94

>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 87  DREILVQHLLVK--------------------EDDLNLLSELQRRVSQGREDLSDLAVEH 126
           D ++ V HLL+K                    ++ + +L +   R+  G   LS+LA   
Sbjct: 65  DGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTE 124
Query: 127 SICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQ 175
           S C S   GG LG+  KGQ+ P FEE AF   + +V+   +T  G H+LQ
Sbjct: 125 SDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQ 174

>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn Length = 108

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           I   + H+K+Q+    KEA L+D+R+P+  A+        L     G++  D     D  
Sbjct: 7   INVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFD 58
Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
               VMC+HG  S   AQ+L  QG+  V+++ GG  A+
Sbjct: 59  TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGW-VRKGQLV 147
           +I   H+LV   D     E+++++ +G E   DLA E+S   S  +GG LGW  ++GQ+ 
Sbjct: 4   KIRASHILVA--DKKTAEEVEKKLKKG-EKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD 60
Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSE 179
             F + AF     +V+   KT++G+H+++   E
Sbjct: 61  ETFSKAAFKLKTGEVSDPVKTQYGYHIIKKTEE 93

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 208 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 267
           LIDVREP E+    + G   +PL +      ++ V     KD Y+ C  G R    A+ L
Sbjct: 506 LIDVREPNELKQGXIKGSINIPLDELRDRLEEVPV----DKDIYITCQLGXRGYVAARXL 561
Query: 268 QTQGFRRVFNVSGGIHAYAT 287
             +G+ +V NV GG   Y T
Sbjct: 562 XEKGY-KVKNVDGGFKLYGT 580

>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 22/99 (22%)
Query: 90  ILVQHLLV--KEDDLNLLSELQRRVSQGRE---DLSDLAVEHSICP-SKGEGGMLGWVRK 143
           +  +H+LV  +++  ++++EL  +  +G+E     S+LA E SI P SK +GG LGW  +
Sbjct: 113 VQAKHILVATEKEAKDIINEL--KGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQ 170
Query: 144 GQLVPEFEEVAF--------TTPLNKVARCKTKFGWHLL 174
             +V  F + AF        TTP+      KT FG+H++
Sbjct: 171 STMVKPFTDAAFALKNGTITTTPV------KTNFGYHVI 203

>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding Length = 408

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 89  EILVQHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
           E+  +H+L+K       E     L ++   +  G+   +  A E S  P S  +GG LGW
Sbjct: 264 EVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 323
Query: 141 VRKGQLVPEFEEVAFTTPLNK---VARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKM 197
                  P F +    T LNK    A   + FGWHL+++L  R        Q D  ++ +
Sbjct: 324 ATPDIFDPAFRDA--LTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRML 381
Query: 198 QDPNFHKEA 206
            +  F +EA
Sbjct: 382 MNRKFSEEA 390

>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14 Length = 101

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 90  ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 149
           + V+H+L  E    ++  +++  S  R   +++A ++S   ++ +GG LGW+ +G +V  
Sbjct: 8   VKVRHILC-EKHGKIMEAMEKLKSGMR--FNEVAAQYSEDKAR-QGGDLGWMTRGSMVGP 63
Query: 150 FEEVAFTTPLNKVAR-------CKTKFGWHLLQV 176
           F+E AF  P++ + +        KTKFG+H++ V
Sbjct: 64  FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 97

>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 90  ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 149
           + V+H+L  E    ++  +++  S  R   +++A ++S   ++ +GG LGW+ +G +V  
Sbjct: 11  VKVRHILC-EKHGKIMEAMEKLKSGMR--FNEVAAQYSEDKAR-QGGDLGWMTRGSMVGP 66
Query: 150 FEEVAFTTPLNKVAR-------CKTKFGWHLLQV 176
           F+E AF  P++ + +        KTKFG+H++ V
Sbjct: 67  FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 100

>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur Transferase Homodimer From Wolinella Succinogenes Length = 137

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK-FDP 246
           + P + +K +Q+   + +  LIDVR+P+E+     P  +       G   P +     DP
Sbjct: 25  LSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP 81
Query: 247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 293
           +K   V C    R+    + L+  GF+ ++N  GG+  +  +  PS+
Sbjct: 82  EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL 128

>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           I   + H+K+Q+    KEA L+D+R+P+  A+        L     G++  D     D  
Sbjct: 7   INVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFD 58
Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
               VM +HG  S   AQ+L  QG+  V+++ GG  A+
Sbjct: 59  TPVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14 Length = 96

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 11/94 (11%)
Query: 90  ILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 149
           + V+H+L  E    ++  +++  S  R   +++A ++S   ++ +GG LGW+ +G +V  
Sbjct: 3   VKVRHILC-EKHGKIMEAMEKLKSGMR--FNEVAAQYSEDKAR-QGGDLGWMTRGSMVGP 58
Query: 150 FEEVAFTTPLNKVAR-------CKTKFGWHLLQV 176
           F+E AF  P++ + +        KTKFG+H++ V
Sbjct: 59  FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 92

>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Domain Ii Of Molecular Chaperone Sura From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 89  EILVQHLLVKEDDLN-------LLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
           E+  +H+L+K   +         L E+   +  G+   +  A E+S  P S  +GG LGW
Sbjct: 8   EVHARHILLKPSPIXNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGW 67
Query: 141 VRKGQLVPEFEEVAFTTPLNKV------ARCKTKFGWHLLQVLSERE 181
                  P+  + AF   L K+      A   + FGWHL+++L  R+
Sbjct: 68  A-----TPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	2e-37
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	6e-33
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	2e-32
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	5e-31
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	7e-30
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	9e-27
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	1e-26
1tq1_A	129	AT5G66040, senescence-associated family protein; C	5e-26
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	9e-26
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	1e-25
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	9e-25
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	1e-24
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	5e-24
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	2e-23
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	3e-23
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	9e-23
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	2e-22
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	2e-22
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	2e-22
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	4e-22
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	2e-21
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	8e-21
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	1e-20
2jtq_A	85	Phage shock protein E; solution structure rhodanes	9e-20
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	1e-19
1vee_A	134	Proline-rich protein family; hypothetical protein,	2e-19
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	3e-19
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	5e-18
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	8e-18
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	9e-18
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	1e-17
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	6e-17
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	3e-16
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	7e-12
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	4e-16
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-15
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-11
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	5e-11
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	5e-14
3r2u_A	466	Metallo-beta-lactamase family protein; structural	3e-13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	5e-13
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	4e-10
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	3e-09
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	4e-09
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	6e-07
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	4e-06
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	6e-06
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	3e-05
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	1e-04
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	4e-04

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score =  128 bits (323), Expect = 2e-37
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 22/128 (17%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-------------G 234
           +   +  + +          L+DVR   EV +  LP    +PL+                
Sbjct: 3   VSVTDYKRLLDS---GAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEA 59

Query: 235 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRR------VFNVSGGIHAYATK 288
            W      +       YV+C  G  S +  + LQ+    +      V +V GG+ A+A K
Sbjct: 60  IWEEKQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAK 119

Query: 289 VDPSIPTY 296
           +D + P Y
Sbjct: 120 IDGTFPQY 127

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score =  116 bits (292), Expect = 6e-33
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 183 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV 242
           S  + I   +L++ ++         ++DVREP E+   S+     +P+ +      +   
Sbjct: 1   SYYRSINAADLYENIKA------YTVLDVREPFELIFGSIANSINIPISEL----REKWK 50

Query: 243 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 296
             +  K   V+C HG RS    ++L   G   + +V GGI ++  +  P +  +
Sbjct: 51  ILERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLEH 103

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score =  114 bits (288), Expect = 2e-32
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
           + I   + H+K+Q+    KEA L+D+R+P+  A+        L                D
Sbjct: 5   ECINVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTL----GAFMRDND 56

Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT 295
                 VMC+HG  S   AQ+L  QG+  V+++ GG  A+  +    +  
Sbjct: 57  FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEVAY 106

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score =  111 bits (279), Expect = 5e-31
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
           + I   EL +K+ D        ++DVR  +E A+  +PG + +P+       PD    F+
Sbjct: 2   ESITVTELKEKILD---ANPVNIVDVRTDQETAMGIIPGAETIPMNSI----PDNLNYFN 54

Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
             +  Y++C  G RS QV Q+L+  G     NV GG+  +  +   
Sbjct: 55  DNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLE 99

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92

 Score = 99.5 bits (249), Expect = 9e-27
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 147
           +     H+LVKE+ L    +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+V
Sbjct: 2   KTAAALHILVKEEKL--ALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMV 58

Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLS 178
           P F++V F+ P+ +      T+FG+H+++VL 
Sbjct: 59  PAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 90

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 99.6 bits (249), Expect = 1e-26
 Identities = 18/102 (17%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           ++ ++P+EL   +++        ++DVR  +  +       + +PL +       +    
Sbjct: 1   MRKVRPEELPALLEEG-----VLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGL---- 51

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
            P++   ++C  G+ S   A +L+ +G+    ++ GG+ A  
Sbjct: 52  -PRRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALT 91

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 98.7 bits (246), Expect = 5e-26
 Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 170 GWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLP 229
           G H    L   E+ +   +     H  +         + +DVR PEE +     G   +P
Sbjct: 2   GHHHHHHLEAEESRVPSSVSVTVAHDLLL-----AGHRYLDVRTPEEFSQGHACGAINVP 56

Query: 230 LRQFGSWG--------PDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 281
               G+ G          ++  F    +  V C  G RS++    L   GF  V ++ GG
Sbjct: 57  YMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 116

Query: 282 IHAYATKVDP 291
             A+A    P
Sbjct: 117 YSAWAKNGLP 126

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 97.3 bits (243), Expect = 9e-26
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 192 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTY 251
            L  +++         ++DVR+        + G   +P+          +   +  +D Y
Sbjct: 2   VLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD---RASSSLEKSRDIY 56

Query: 252 VMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
           V      ++ Q    L++ GF  V  + GG+ A+     P
Sbjct: 57  VYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGP 96

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 98.2 bits (245), Expect = 1e-25
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 190 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKD 249
              L  +++         ++DVR+        + G   +P+          +   +  +D
Sbjct: 4   AHVLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD---RASSSLEKSRD 58

Query: 250 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
            YV      ++ Q    L++ GF  V  + GG+ A+     P
Sbjct: 59  IYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGP 100

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} Length = 110

 Score = 95.0 bits (237), Expect = 9e-25
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 89  EILVQHLLVKEDDL-------NLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
           E+  +H+L+K   +         L E+   +  G+   +  A E+S  P S  +GG LGW
Sbjct: 8   EVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGW 67

Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSERE 181
                  P F +        +++    + FGWHL+++L  R+
Sbjct: 68  ATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 95.0 bits (237), Expect = 1e-24
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGPDITV 242
             + P + +K +Q+   + +  LIDVR+P+E+     P    ++ +   +          
Sbjct: 23  VMLSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKS-- 77

Query: 243 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP 294
             DP+K   V C    R+    + L+  GF+ ++N  GG+  +  +  PS+ 
Sbjct: 78  GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 93.7 bits (233), Expect = 5e-24
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 175 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 234
                +  S +Q    +++ + +   +      L+DVREP E ++  +P    +P R   
Sbjct: 12  TESQSKNVSNIQSYSFEDMKRIVGKHD--PNVVLVDVREPSEYSIVHIPASINVPYRSHP 69

Query: 235 S---WGPDI------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
                 P          K D  K+    C  G R  +  +   + G+       G ++ +
Sbjct: 70  DAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDW 129

Query: 286 ATKVDPSI 293
            +     +
Sbjct: 130 VSHGGDKL 137

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93

 Score = 90.7 bits (226), Expect = 2e-23
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 5/93 (5%)

Query: 86  GDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWV-RKG 144
           G  +I   H+LV +       E+++++ +G E   DLA E+S   S  +GG LGW  ++G
Sbjct: 1   GSGKIRASHILVADKKTAE--EVEKKLKKG-EKFEDLAKEYSTDSSASKGGDLGWFAKEG 57

Query: 145 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQV 176
           Q+   F + AF     +V+   KT++G+H+++ 
Sbjct: 58  QMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKK 90

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB: 3ui5_A 1fjd_A 1eq3_A Length = 101

 Score = 90.8 bits (226), Expect = 3e-23
 Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 11/102 (10%)

Query: 86  GDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ 145
           G   + V+H+L ++     + E   ++  G    +++A ++S   ++ +GG LGW+ +G 
Sbjct: 4   GSNAVKVRHILCEKHGK--IMEAMEKLKSG-MRFNEVAAQYSEDKAR-QGGDLGWMTRGS 59

Query: 146 LVPEFEEVAFTTPLNKVARC-------KTKFGWHLLQVLSER 180
           +V  F+E AF  P++ + +        KTKFG+H++ V   +
Sbjct: 60  MVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} Length = 97

 Score = 89.2 bits (222), Expect = 9e-23
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 84  GGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVR 142
           G    +I   H+LVK+    L   +Q R+  G E    LA E SI   S    G LG+  
Sbjct: 4   GSMADKIKCSHILVKKQGEAL--AVQERLKAG-EKFGKLAKELSIDGGSAKRDGSLGYFG 60

Query: 143 KGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 177
           +G++V  FE+ AF   + +V+   K++FG+H+++ L
Sbjct: 61  RGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRL 96

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 98  KEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 157
           KE+ L L++   +++  G ED   LA + S C S    G LG   +GQ+   FE+ +F  
Sbjct: 85  KEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFAL 144

Query: 158 PLNKVAR-CKTKFGWHLLQV 176
              +++    T  G H++  
Sbjct: 145 RTGEMSGPVFTDSGIHIILR 164

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123

 Score = 89.4 bits (222), Expect = 2e-22
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 98  KEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 157
           +E+ L L++   +++  G ED   LA + S C S    G LG   +GQ+   FE+ +F  
Sbjct: 42  QEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFAL 101

Query: 158 PLNKVAR-CKTKFGWHLLQV 176
              +++    T  G H++  
Sbjct: 102 RTGEMSGPVFTDSGIHIILR 121

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} Length = 112

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 86  GDREILVQHLLVK------EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLG 139
           G  E  +  + +               ++  ++ QG       A ++S   +   GG LG
Sbjct: 4   GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQG-GSFVAYARQYSEASTAAVGGDLG 62

Query: 140 WVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS 183
           W+R  QL  E    A +    ++A   + + G+ +L ++ +RE  
Sbjct: 63  WIRLAQLPTELATTAASMGPGQLAGPVEIRGGFSILYLIDKREGH 107

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 98  KEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 157
           +E  +  L  ++  +  G+ +  ++A   S C S   GG LG   +GQ+   FEE  +  
Sbjct: 58  REAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYAL 117

Query: 158 PLNKVAR-CKTKFGWHLLQV 176
            +  ++    T  G H+++ 
Sbjct: 118 KVGDISDIVDTDSGVHIIKR 137

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 88.0 bits (218), Expect = 2e-21
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 98  KEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 157
           +++ + +L +   R+  G   LS+LA   S C S   GG LG+  KGQ+ P FEE AF  
Sbjct: 96  RDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNL 155

Query: 158 PLNKVAR-CKTKFGWHLLQV 176
            + +V+   +T  G H+LQ 
Sbjct: 156 HVGEVSNIIETNSGVHILQR 175

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111

 Score = 84.7 bits (210), Expect = 8e-21
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 89  EILVQHLLVK-------------EDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGE 134
                H+L+K             ++      E+Q+ VS+      ++A + S+   S  +
Sbjct: 7   SKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKK 66

Query: 135 GGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 177
            G LG+V KGQ   +FE+  F     +V+   K+ FG+H+++  
Sbjct: 67  DGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKAD 110

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} Length = 252

 Score = 87.5 bits (217), Expect = 1e-20
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 23/148 (15%)

Query: 85  GGDREILVQHLLVK--EDDLNLLSELQRRVSQGR-EDLSDLAVEHSICP-SKGEGGMLGW 140
                +  +H+LV   ++  ++++EL+    +      S+LA E SI P SK +GG LGW
Sbjct: 108 VKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGW 167

Query: 141 VRKGQLVPEFEEVAFTTPLNKVARC--KTKFGWHLLQVLSEREAS--------------L 184
             +  +V  F + AF      +     KT FG+H++   + +                 L
Sbjct: 168 FDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGL 227

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVR 212
             +     +++K QD      A+ ++ +
Sbjct: 228 KFEEFKKVINQKGQD--LLNSAK-VEYK 252

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 80.7 bits (200), Expect = 9e-20
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 206 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 265
              IDVR PE+     + G   +PL++            D      V C+ G +S Q  +
Sbjct: 2   EHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVP--DKNDTVKVYCNAGRQSGQAKE 59

Query: 266 WLQTQGFRRVFNVSGGIHAYATKVD 290
            L   G+  V N  GG+   A    
Sbjct: 60  ILSEMGYTHVENA-GGLKDIAMPKV 83

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 89  EILVQHLLVK----------EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGML 138
           E+ + H+L+            +  +    +  +   G  D   LA+ HS       GG +
Sbjct: 2   ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQM 60

Query: 139 GWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
           GW R  +L   F +   T     +    ++  G+H+L+V   R
Sbjct: 61  GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 81.2 bits (200), Expect = 2e-19
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 182 ASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR---------Q 232
            S          + K+        AQL+D+R   +      P  + L  +          
Sbjct: 1   GSSGSSGSAKNAYTKLGT---DDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED 57

Query: 233 FGSWGPDITVKFDPQKDT--YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 282
              +   +++KF   ++T  Y++      S  VA+ +   GF+  + +  G 
Sbjct: 58  KPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGA 109

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 89  EILVQHLLVK-EDDLNLLSELQRRVSQGREDLSDLAVEHSI-CPSKGEGGMLGWVRKGQL 146
                 +  K ED+      +   +++G  D + LA E S    S   GG +GW+    +
Sbjct: 5   RTRYSIIQTKTEDEAK---AVLDELNKG-GDFAALAKEKSADIISARNGGDMGWLEDATI 60

Query: 147 VPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA 182
             E +              K+  G+ ++++   + A
Sbjct: 61  PDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQAA 96

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 78.2 bits (192), Expect = 5e-18
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR----QFGSWGPDIT 241
            DI P +  + + D   +  A L+DVR   E     +P    L       ++ +      
Sbjct: 5   GDITPLQAWEMLSD---NPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHN 61

Query: 242 VKF-------------DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284
             F               ++    +C  G RS+  A+     G    +NV  G   
Sbjct: 62  DNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEG 117

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 76.2 bits (188), Expect = 8e-18
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV 263
            +  ++DVRE +E     LP   ++ +         +       K   + C  G R+L  
Sbjct: 15  NDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFL--SQHKDKKVLLHCRAGRRALDA 72

Query: 264 AQWLQTQGFRRVFNVSGGIHAYA 286
           A+ +   G+     + G ++ + 
Sbjct: 73  AKSMHELGYTPY-YLEGNVYDFE 94

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 76.6 bits (189), Expect = 9e-18
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 181 EASLLQDIQPDELHKKMQDPNFHKEAQLIDVRE-PEEVALSSLPGFQVLPLRQFGSWGPD 239
              L   I    +   MQ+     +  ++DVR  P +V    + G   +P +   +   +
Sbjct: 10  TTYLSLYIDHHTVLADMQNAT--GKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGE 67

Query: 240 ITVKFDPQKDTYVMCHHGMRSL--QVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
           +    DP K   V    G  +L       L + GF   + ++G +  +     P
Sbjct: 68  L----DPAKTYVVYDWTGGTTLGKTALLVLLSAGF-EAYELAGALEGWKGMQLP 116

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 175 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 234
           +        L  +    +L   ++    ++   ++DVR+ E      +P    +P  +  
Sbjct: 5   EAYRHYMKKLSYETDIADLSIDIKKG--YEGIIVVDVRDAEAYKECHIPTAISIPGNKIN 62

Query: 235 SWGPDITVKFDPQKDTYVMCH--HGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
               D T +   +K     C       + + A      GF RV  + GGI  +
Sbjct: 63  E---DTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYW 111

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 75.0 bits (185), Expect = 6e-17
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 174 LQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALS-SLPGFQVLPL-- 230
           ++ + +   S ++ +   +     +      +  ++D+R+P E+     +PG        
Sbjct: 10  IKAMLDEANSSIETLTTADAIALHKSGA--SDVVIVDIRDPREIERDGKIPGSFSCTRGM 67

Query: 231 --RQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284
                    P     F   K     C  G+RS   A+  Q  G + V ++ GG  A
Sbjct: 68  LEFWIDPQSPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 33  SIFQKPASFASFYKSLNPASNSNSFH----IHIISRSFTSPKAASFSSGTEGSSPGGGDR 88
            I + P  FA    +                HI+  +              G S      
Sbjct: 215 RIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN-----------DLRGESKNISVT 263

Query: 89  EILVQHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
           E+  +H+L+K       E     L ++   +  G+   +  A E S  P S  +GG LGW
Sbjct: 264 EVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 323

Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 199
                  P F +        +++    + FGWHL+++L  R        Q D  ++ + +
Sbjct: 324 ATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMN 383

Query: 200 PNFHKEAQ 207
             F +EA 
Sbjct: 384 RKFSEEAA 391

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 64.3 bits (156), Expect = 7e-12
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 98  KEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 157
             +  +    +  +   G  D   LA+ HS       GG +GW R  +L   F +   T 
Sbjct: 172 VNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTA 230

Query: 158 PLNKVAR-CKTKFGWHLLQVLSEREAS 183
               +    ++  G+H+L+V   R  S
Sbjct: 231 KKGDIVGPIRSGVGFHILKVNDLRGES 257

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Length = 325

 Score = 76.1 bits (187), Expect = 4e-16
 Identities = 16/148 (10%), Positives = 53/148 (35%), Gaps = 21/148 (14%)

Query: 89  EILVQHLLVKEDD-------LNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
              +  +  + D           +SE+++ +       + +A      P  +   GM+ W
Sbjct: 161 RYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEW 220

Query: 141 VRKGQLVPEFE---EVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQP---DEL 193
           +    L    +    +A   P   V+   + +   + +  +  +  + +++++    + L
Sbjct: 221 ISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNIL 280

Query: 194 HKKMQDPNFHKEAQ------LIDVREPE 215
           ++  ++  FH+  +       I + +  
Sbjct: 281 YRDKEEDTFHRWLKESRAEIPIQIFDEA 308

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 73.6 bits (180), Expect = 6e-15
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
           +      ++   +      +E  L+DVRE +  A +       LPL +            
Sbjct: 6   IAVRTFHDIRAALLA---RRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP-- 60

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284
                  V       +   AQ L   G+  V  + GG+  
Sbjct: 61  RRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSG 100

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 70.9 bits (173), Expect = 6e-14
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
             I P  L   + +P      +++D       A   +PG   +   Q       +     
Sbjct: 377 DTIDPTTLADWLGEPG----TRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL----G 428

Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 284
             +   + C   + +      +Q    + VF + GG  A
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSA 467

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 134 EGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDEL 193
             G +GW   GQ +   +   F        +   +    +       + + ++ +    L
Sbjct: 219 RNGTIGWTLAGQQLEHGQTRRFGAISQDTRKAAAQRARAV------ADRAGVERLDLAGL 272

Query: 194 HKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVM 253
            +   + +  +   L+DVR PEE     LPG +  P  Q       +           ++
Sbjct: 273 AQWQDEHD--RTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVAS--VRGARLVLV 328

Query: 254 CHHGMRSLQVAQWLQTQGFRRVF 276
              G+R+   A WL   G++   
Sbjct: 329 DDDGVRANMSASWLAQMGWQVAV 351

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 62.1 bits (150), Expect = 5e-11
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 23/153 (15%)

Query: 134 EGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDEL 193
           +GG+ GW   G                     +                     +  +E+
Sbjct: 95  DGGLSGWRNAGG-----------------ELFRDVNVPSKAFGELVEAERHTPSLAAEEV 137

Query: 194 HKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVM 253
              +       EA ++D R  +E    S+PG   +P  +      ++    DP+    V 
Sbjct: 138 QALLDA---RAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAEL--APDPRTRVIVN 192

Query: 254 CHHGMRSLQVAQWLQTQGFRRVF-NVSGGIHAY 285
           C    RS+   Q L   G       +  G   +
Sbjct: 193 CAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGW 225

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 70.8 bits (173), Expect = 5e-14
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 180 REASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD 239
            + +   ++ PDE+   +      +   L+DVR  +E A   LP    +PL +  +   D
Sbjct: 368 DDVASYANVSPDEVRGALA----QQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHD 423

Query: 240 ITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
           +           V C  G RS   A  L+  G   V N+ GG  A+ 
Sbjct: 424 V----PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWR 466

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 8/141 (5%)

Query: 144 GQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 203
           G  +   +E+      + V++        L  +  +  A         +      +    
Sbjct: 330 GWYLNYDQEINLIGDYHLVSKATH----TLQLIGYDDIAGYQLPQSKIQTRSIHSEDITG 385

Query: 204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV 263
            E+ ++DVR   E     L     +P  +      +  + F+     YV C  G+RS   
Sbjct: 386 NESHILDVRNDNEWNNGHLSQAVHVPHGKL----LETDLPFNKNDVIYVHCQSGIRSSIA 441

Query: 264 AQWLQTQGFRRVFNVSGGIHA 284
              L+ +G+  + NV+ G   
Sbjct: 442 IGILEHKGYHNIINVNEGYKD 462

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 175 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 234
            V S         I  D++    +D        L+DVR P E+    L G   +P+ +  
Sbjct: 462 FVASNIIKGDATPIHFDQIDNLSED------QLLLDVRNPGELQNGGLEGAVNIPVDELR 515

Query: 235 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
               ++       K+  +    G+R     + L   G+ R  N+ GG   Y
Sbjct: 516 DRMHEL----PKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYRTY 561

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 175 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 234
              S      +  +Q  E+ + +++        LIDVREP E+    + G   +PL +  
Sbjct: 478 YAASNIVDGFVDTVQWHEIDRIVEN-----GGYLIDVREPNELKQGMIKGSINIPLDEL- 531

Query: 235 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 287
               D   +    KD Y+ C  GMR    A+ L  +G+ +V NV GG   Y T
Sbjct: 532 ---RDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGY-KVKNVDGGFKLYGT 580

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 56.5 bits (136), Expect = 4e-10
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 181 EASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI 240
            A  +  I   +L    + PN      +IDVR+ E      + G        F      +
Sbjct: 23  MARSISYITSTQLLPLHRRPNI----AIIDVRDEERNYDGHIAGSLHYASGSFDDKISHL 78

Query: 241 TVKFDPQKDTYV--MCHHGMRSLQVAQWL--------QTQGFRRVFNVSGGIHA 284
                  KDT V       +R    A+ L        +  G + +  +  G + 
Sbjct: 79  VQNV-KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 53.9 bits (129), Expect = 3e-09
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 183 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-GSWGPDIT 241
           +    I+P+EL + + +P+   +A +ID R   +     +     +P           + 
Sbjct: 2   TNYTYIKPEELVELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLA 60

Query: 242 VKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ------GFRRVFNVSGGIHAYATK 288
                +K    + H     +R+ + A                V+ + GG  A+   
Sbjct: 61  KTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 32/115 (27%)

Query: 202 FHKEAQLIDVREPEEVALSSLPGFQVLPL------------------------------R 231
              +   +DVR   E     +     +PL                               
Sbjct: 14  KLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSY 73

Query: 232 QFGSWGPDITVKFDPQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
           +                +  + C   GMRS  +   L + G   V+ + GG  AY
Sbjct: 74  KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAY 127

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)

Query: 172 HLLQVLSEREASLLQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLP 229
           +L   ++ +   L + I P+ +   +     N  KE  +ID R P E     + G   L 
Sbjct: 10  YLFHTVAGKHQDL-KYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLH 68

Query: 230 LRQFGSWG--PDITVKFDPQKDTYVMC--HHGMRSLQVAQWLQTQ----------GFRRV 275
           + +           V  D ++   V        R  ++ ++++ +           +  +
Sbjct: 69  MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPEL 128

Query: 276 FNVSGGIHAYATK 288
           + + GG   +  K
Sbjct: 129 YVLKGGYKEFFMK 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 42/287 (14%), Positives = 78/287 (27%), Gaps = 90/287 (31%)

Query: 15  AITQSLIP--TLNLSSSSSLSIFQKPASFASFYKSLN------P--ASNSNSFHIHIISR 64
            +T  L    T ++S              +   K L+      P     +N   + II  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-- 333

Query: 65  SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVK------EDDLNLLS--ELQRRVSQGR 116
                 A S   G               +H+         E  LN+L   E ++      
Sbjct: 334 ------AESIRDGL--------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----- 374

Query: 117 EDLSDLAV--EHSICPSKGEGGMLG--WVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWH 172
                L+V    +  P+     +L   W     ++     V        V +        
Sbjct: 375 --FDRLSVFPPSAHIPTI----LLSLIW---FDVIKSDVMVV-------VNKLHKYS--- 415

Query: 173 LLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ 232
           L++   +     +  I  +   K   +   H+   ++D                    + 
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVD---------------HYNIPKT 458

Query: 233 FGSWGPDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVF 276
           F S          P  D Y   H   H +++++  +  +   FR VF
Sbjct: 459 FDSDDL-----IPPYLDQYFYSHIGHH-LKNIEHPE--RMTLFRMVF 497

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 172 HLLQVLSEREASLLQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLP 229
            LLQ +  +   L + I P+ +   +     N   +  ++D R P E     +     LP
Sbjct: 11  FLLQTVDGKHQDL-KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLP 69

Query: 230 LRQFGSWG--PDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ----------GFRR 274
           L +                 K   ++ H      R  ++ ++++ +           +  
Sbjct: 70  LERDAESFLLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPE 129

Query: 275 VFNVSGGIHAY 285
           ++ + GG   +
Sbjct: 130 MYILKGGYKEF 140

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 172 HLLQVLSEREASLLQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLP 229
            LLQ +  +   L + I P+ +   +     N   +  ++D R P E     +     LP
Sbjct: 31  FLLQTVDGKHQDL-KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLP 89

Query: 230 LRQFGSW--GPDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ----------GFRR 274
           L +                 K   ++ H      R  ++ ++++ +           +  
Sbjct: 90  LERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPE 149

Query: 275 VFNVSGGIHAYATK 288
           ++ + GG   +  +
Sbjct: 150 MYILKGGYKEFFPQ 163

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 185 LQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ--FGSWGPDI 240
           L+ + P+ +   +        ++  +ID R P E     + G   L  ++  F  +    
Sbjct: 56  LKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKKP 115

Query: 241 TVKFDPQKDTYVMCHH---GMRSLQVAQWLQTQ----------GFRRVFNVSGGIHAYAT 287
            V  D QK   ++ H      R  ++ + L+ +           +  ++ + GG   +  
Sbjct: 116 IVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFP 175

Query: 288 K 288
           +
Sbjct: 176 E 176

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 174 LQVLSEREASLLQDIQPDELHKKMQD---PNFHKEAQLIDVREPEEVALSSLPGFQVLPL 230
            Q +     + ++ + P ELH+ MQ+       +  Q++DVR   +     +        
Sbjct: 19  FQGMDSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVR-GSDYMGGHIKDGWHYAY 77

Query: 231 RQFGSWGPDI--------TVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ------GFR 273
            +       +          + D +    V+ H      R    A  L            
Sbjct: 78  SRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRC 137

Query: 274 RVFNVSGGIHAYATK 288
           R++ + GG   + + 
Sbjct: 138 RLWVLRGGFSRWQSV 152

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Length = 252

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 130 PSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS 183
                      +      P    +    P+   +     K G+ L +V S+    
Sbjct: 156 KKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQ 210

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Length = 265

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG---FQVLPLRQFGSWGPDITVKF 244
           + P+E H+ +QDPN      L+D R   E  L +        +   R+F  +   +    
Sbjct: 124 LSPEEWHQFIQDPNVI----LLDTRNDYEYELGTFKNAINPDIENFREFPDY---VQRNL 176

Query: 245 DPQKD-TYVM-CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
             +KD    M C  G+R  +   +++  GF  V+ +  GI  Y   +  
Sbjct: 177 IDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYLESIPE 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.92
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	99.92
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.91
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	99.91
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	99.91
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.91
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.91
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.9
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.9
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	99.9
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	99.9
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	99.89
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.89
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.89
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.89
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	99.88
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.88
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	99.88
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	99.88
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	99.88
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.88
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.88
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.87
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.87
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.87
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.87
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.86
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.86
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	99.85
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.84
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.84
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.83
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.83
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.83
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	99.83
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.83
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.8
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.79
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.79
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.78
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.78
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.78
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.77
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.77
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.77
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.76
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.76
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.76
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.76
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	99.75
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.75
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.75
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.75
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.74
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.74
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.74
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.74
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.74
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.73
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.73
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.72
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.72
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.72
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.71
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.71
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.71
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	99.7
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.69
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.68
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.68
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.68
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.68
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.67
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.66
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.65
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.65
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.62
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.6
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.6
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.45
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	99.38
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.31
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.25
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	99.17
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	98.96
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	98.89
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	98.86
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.81
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	98.67
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	98.63
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	98.62
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	98.59
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	98.57
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	98.56
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	98.55
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	98.5
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.38
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	97.64
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	97.59
2f46_A	156	Hypothetical protein; structural genomics, joint c	97.18
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	89.97
1v8c_A	168	MOAD related protein; riken structural genomics/pr	86.3
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	83.47

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.92  E-value=2e-25  Score=167.57  Aligned_cols=98  Identities=32%  Similarity=0.592  Sum_probs=86.4

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      +.++++++++++.++   ++..+||||++.||..||||||+|||+.+|....    ..++++++||+||.+|.||..++.
T Consensus         2 k~Is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~----~~l~~~~~ivv~C~~G~rS~~aa~   74 (103)
T 3iwh_A            2 KSITTDELKNKLLES---KPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNL----NSFNKNEIYYIVCAGGVRSAKVVE   74 (103)
T ss_dssp             CEECHHHHHHGGGSS---SCCEEEECSCHHHHTTCBCTTCEECCGGGGGGCG----GGCCTTSEEEEECSSSSHHHHHHH
T ss_pred             CCcCHHHHHHHHhCC---CCeEEEECCChhHHhcCccCCcccCcccchhhhh----hhhcCCCeEEEECCCCHHHHHHHH
Confidence            458899999988775   5789999999999999999999999999987653    456899999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|+++||+++ +|.||+.+|..+..|
T Consensus        75 ~L~~~G~~~~-~l~GG~~~W~~~g~p   99 (103)
T 3iwh_A           75 YLEANGIDAV-NVEGGMHAWGDEGLE   99 (103)
T ss_dssp             HHHTTTCEEE-EETTHHHHHCSSSCB
T ss_pred             HHHHcCCCEE-EecChHHHHHHCCCc
Confidence            9999999654 799999999976544

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=99.92  E-value=6.8e-25  Score=166.39  Aligned_cols=97  Identities=26%  Similarity=0.478  Sum_probs=88.5

Q ss_pred             CCCCceEEEeeEeeccc-------hHHHHHHHHHHHhcCCc-cHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHH
Q 022496           84 GGGDREILVQHLLVKED-------DLNLLSELQRRVSQGRE-DLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVA  154 (296)
Q Consensus        84 ~~~~~~~~~~~Il~~~~-------~~~~a~~i~~~l~~~g~-~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~  154 (296)
                      ....++++++|||++.+       ++++|++|+++|+ +|. +|++||++||+|+ ++.+||+|||+..++|+|+|.+++
T Consensus         3 ~~~~~~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~-~G~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~   81 (110)
T 4g2p_A            3 AISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIK-SGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDAL   81 (110)
T ss_dssp             CCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHH
T ss_pred             CccccEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHH-cCcccHHHHHHHhCCCccccccccccCeecccccCHHHHHHH
Confidence            34458999999999853       4778999999996 887 9999999999998 999999999999999999999999


Q ss_pred             hcCCCCcee-ceeecCcceEEEeehhhh
Q 022496          155 FTTPLNKVA-RCKTKFGWHLLQVLSERE  181 (296)
Q Consensus       155 ~~l~~G~vs-pv~~~~G~~Ii~v~~~~~  181 (296)
                      |.|++|++| ||+|++||||+++.+++.
T Consensus        82 ~~l~~Geis~pv~t~~G~hIikv~~~r~  109 (110)
T 4g2p_A           82 TKLHKGQISAPVHSSFGWHLIELLDTRK  109 (110)
T ss_dssp             HTCCTTCBCCCEEETTEEEEEEEEEEEE
T ss_pred             HcCCCCCcCccEEECCEEEEEEEEEEec
Confidence            999999999 899999999999998753

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.91  E-value=9.6e-25  Score=163.15  Aligned_cols=98  Identities=29%  Similarity=0.555  Sum_probs=86.6

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++++++.+++.+.   ++..+||||++.||..||||||+|+|+..+...    ...++++++||+||.+|.||..++.
T Consensus         2 ~~is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~ivvyC~~g~rs~~a~~   74 (100)
T 3foj_A            2 ESITVTELKEKILDA---NPVNIVDVRTDQETAMGIIPGAETIPMNSIPDN----LNYFNDNETYYIICKAGGRSAQVVQ   74 (100)
T ss_dssp             CEECHHHHHHGGGSS---SCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC----GGGSCTTSEEEEECSSSHHHHHHHH
T ss_pred             CccCHHHHHHHHhcC---CCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH----HHhCCCCCcEEEEcCCCchHHHHHH
Confidence            357889999988543   478999999999999999999999999998764    3446899999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|+.+|| ||++|+||+.+|..+..|
T Consensus        75 ~L~~~G~-~v~~l~GG~~~W~~~g~p   99 (100)
T 3foj_A           75 YLEQNGV-NAVNVEGGMDEFGDEGLE   99 (100)
T ss_dssp             HHHTTTC-EEEEETTHHHHHCSSSCB
T ss_pred             HHHHCCC-CEEEecccHHHHHHcCCC
Confidence            9999999 999999999999976543

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=99.91  E-value=1.2e-24  Score=165.97  Aligned_cols=91  Identities=25%  Similarity=0.481  Sum_probs=82.6

Q ss_pred             CceEEEeeEeeccc---------------------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCC
Q 022496           87 DREILVQHLLVKED---------------------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ  145 (296)
Q Consensus        87 ~~~~~~~~Il~~~~---------------------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~  145 (296)
                      +++++++|||++.+                     +.+++++|+++|++++.+|+++|++||+++++.+||+|||+..++
T Consensus         2 pe~vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~~~   81 (115)
T 2lj4_A            2 SEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGE   81 (115)
T ss_dssp             CCEEEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGTTSEEEEEETTS
T ss_pred             CCcEEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcccccCCccceecCCC
Confidence            47899999999622                     467899999999744469999999999888999999999999999


Q ss_pred             CcHHHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496          146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  177 (296)
Q Consensus       146 l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~  177 (296)
                      |+|+|.+++|.|++|++| ||+|++|||||+++
T Consensus        82 ~~~~f~~a~~~l~~GeiS~pv~t~~G~HIIkl~  114 (115)
T 2lj4_A           82 MMKPFEDAVRALKIGDISPIVQTDSGLHIIKRL  114 (115)
T ss_dssp             SCHHHHHHHTTSCBTCBCCCEECSSSEEEEEEC
T ss_pred             CCchHHHHHhcCCCCCCCCcEEeCCeEEEEEEe
Confidence            999999999999999999 89999999999985

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=99.91  E-value=1.3e-24  Score=164.79  Aligned_cols=95  Identities=19%  Similarity=0.323  Sum_probs=88.1

Q ss_pred             CceEEEeeEeeccc------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCC
Q 022496           87 DREILVQHLLVKED------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLN  160 (296)
Q Consensus        87 ~~~~~~~~Il~~~~------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G  160 (296)
                      +++++++|||+++.      ++++|++++++|+ +|++|++||++||+|+++.+||+|||++.++++|+|.+++|+|++|
T Consensus         5 ~~~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~-~G~~F~~lA~~~S~d~sa~~GGdlG~~~~~~l~~~f~~a~~~l~~G   83 (112)
T 3gpk_A            5 TEEYRIGEIFLAATEENKPQVFANAEKIVEQLK-QGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASMGPG   83 (112)
T ss_dssp             CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHH-TTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTT
T ss_pred             CcEEEEEEEEEeCChhhHHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCcchhcCcccceEcccccCHHHHHHHHhCCCC
Confidence            48899999999854      3578999999996 8999999999999999999999999999999999999999999999


Q ss_pred             cee-ceeecCcceEEEeehhhhh
Q 022496          161 KVA-RCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       161 ~vs-pv~~~~G~~Ii~v~~~~~~  182 (296)
                      ++| ||+|++|||||++.+++..
T Consensus        84 eiS~pv~t~~G~hIikv~~~~~~  106 (112)
T 3gpk_A           84 QLAGPVEIRGGFSILYLIDKREG  106 (112)
T ss_dssp             CEEEEEEETTEEEEEEEEEEECC
T ss_pred             CccceEEECCEEEEEEEEeEecc
Confidence            999 8999999999999987653

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.91  E-value=4e-25  Score=172.13  Aligned_cols=107  Identities=25%  Similarity=0.404  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccC-------------CCCCCCcEEEE
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV-------------KFDPQKDTYVM  253 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~-------------~~~~~~~iv~~  253 (296)
                      .++.+++.+++.++   ++..+||||++.||..||||||+|||+..+......+..             ..+++++||+|
T Consensus         2 ~is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~   78 (127)
T 3i2v_A            2 RVSVTDYKRLLDSG---AFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVI   78 (127)
T ss_dssp             EECHHHHHHHHHHT---CCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHHHHHHHHHHHHHTTC---CCEEEEEE
T ss_pred             CCCHHHHHHHHhCC---CCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhHHHHHHHHhhhcccccCCCCCeEEEE
Confidence            47788898888764   358999999999999999999999999988765433211             12345599999


Q ss_pred             eCCChhHHHHHHHHHHc------CCCceEEccchHHHhhhccCCCCCCC
Q 022496          254 CHHGMRSLQVAQWLQTQ------GFRRVFNVSGGIHAYATKVDPSIPTY  296 (296)
Q Consensus       254 C~~G~rs~~aa~~L~~~------G~~~v~~l~GG~~~W~~~~~~~~~~~  296 (296)
                      |.+|.||..++.+|+.+      ||.||++|+|||.+|..+.+|++|.|
T Consensus        79 C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~p~y  127 (127)
T 3i2v_A           79 CKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFPQY  127 (127)
T ss_dssp             CSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTSCCC
T ss_pred             cCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCCCCC
Confidence            99999999999999999      69999999999999999999999998

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.90  E-value=1.1e-24  Score=202.17  Aligned_cols=176  Identities=17%  Similarity=0.217  Sum_probs=146.8

Q ss_pred             ccccCCchh----hhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCC
Q 022496            4 RASQLASPV----LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGT   78 (296)
Q Consensus         4 ~~~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~   78 (296)
                      +.+||+-+.    +++.........++++..+..| ..|+.+ ++||.++ ++..||++||+..+.+.++|+.+.|.+++
T Consensus       155 ~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~~g-~~F~~lA~~~S~~~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~  232 (408)
T 1m5y_A          155 NLSHILIPLPENPTSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAKK  232 (408)
T ss_dssp             EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCST-TGGGTTEEEEECGGGSCHHHHTGGGTCCT
T ss_pred             EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHcCCCc-ccccCCcccccchhhccHHHHHHHHhCCC
Confidence            455554332    3333333444455556655666 589999 9999997 78999999999999999999999999999


Q ss_pred             CCCCCC---------------------CCCceEEEeeEeeccc-------hHHHHHHHHHHHhcCCc-cHHHHHHhhCCC
Q 022496           79 EGSSPG---------------------GGDREILVQHLLVKED-------DLNLLSELQRRVSQGRE-DLSDLAVEHSIC  129 (296)
Q Consensus        79 ~~i~~~---------------------~~~~~~~~~~Il~~~~-------~~~~a~~i~~~l~~~g~-~F~~la~~~S~d  129 (296)
                      |+|++|                     ...++++++|||+++.       +++++++++++|+ +|. +|+++|++||.|
T Consensus       233 G~vs~pv~~~~g~~iikv~~~~~~~~~~~~~~~~~~~Il~~~~~~~~~~~a~~~a~~~~~~l~-~g~~~f~~~A~~~s~~  311 (408)
T 1m5y_A          233 GDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIK-SGKTTFAAAAKEFSQD  311 (408)
T ss_dssp             TCEEEEEEETTEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHCCC
T ss_pred             CCccCeeecCCeEEEEEEEEecCCCCcccccchhhheeeecCCCCcCHHHHHHHHHHHHHHHH-cCcccHHHHHHHhCCC
Confidence            998865                     2246799999999853       4677999999996 887 999999999999


Q ss_pred             C-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhh
Q 022496          130 P-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  182 (296)
Q Consensus       130 ~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~  182 (296)
                      + ++.+||++||++.+.++|+|.+++|.|++|++| ||++.+||||+++.++.+.
T Consensus       312 ~~s~~~gg~lg~~~~~~~~~~~~~a~f~l~~G~~s~~v~~~~g~~ii~v~~~~~~  366 (408)
T 1m5y_A          312 PGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNV  366 (408)
T ss_dssp             TTTGGGTTEEEEECGGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEEEEEC
T ss_pred             cchhhcCCcCcccCcccchHHHHHHHHcCCCCCccCcEeeCCeEEEEEEeeecCC
Confidence            6 889999999999999999999999999999999 8999999999999987764

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.90  E-value=4.2e-24  Score=161.95  Aligned_cols=98  Identities=24%  Similarity=0.470  Sum_probs=87.1

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+++.+      ..+||||++.||..||||||+|+|+..|....    ..++++++||+||.+|.||..++.
T Consensus         4 ~~is~~el~~~l~~------~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~~----~~l~~~~~ivvyC~~G~rs~~aa~   73 (108)
T 3gk5_A            4 RSINAADLYENIKA------YTVLDVREPFELIFGSIANSINIPISELREKW----KILERDKKYAVICAHGNRSAAAVE   73 (108)
T ss_dssp             CEECHHHHHHTTTT------CEEEECSCHHHHTTCBCTTCEECCHHHHHHHG----GGSCTTSCEEEECSSSHHHHHHHH
T ss_pred             cEeCHHHHHHHHcC------CEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH----HhCCCCCeEEEEcCCCcHHHHHHH
Confidence            55888888888753      78999999999999999999999999987643    346889999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCCCCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      .|+.+|| ||++|+|||.+|..+..|..+
T Consensus        74 ~L~~~G~-~v~~l~GG~~~W~~~~~~~~~  101 (108)
T 3gk5_A           74 FLSQLGL-NIVDVEGGIQSWIEEGYPVVL  101 (108)
T ss_dssp             HHHTTTC-CEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHcCC-CEEEEcCcHHHHHHcCCCCCC
Confidence            9999999 999999999999998877543

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=99.90  E-value=6.4e-24  Score=163.61  Aligned_cols=94  Identities=28%  Similarity=0.449  Sum_probs=82.8

Q ss_pred             CCCCceEEEeeEeecc-------------------chHHHHHHHHHHHhcCC-ccHHHHHHhhCCCCcccCCcccccccC
Q 022496           84 GGGDREILVQHLLVKE-------------------DDLNLLSELQRRVSQGR-EDLSDLAVEHSICPSKGEGGMLGWVRK  143 (296)
Q Consensus        84 ~~~~~~~~~~~Il~~~-------------------~~~~~a~~i~~~l~~~g-~~F~~la~~~S~d~~~~~gG~lg~~~~  143 (296)
                      ...+++|+++||||+.                   ++++.+++|+++|+ +| .+|++||++||+++++.+||+|||+..
T Consensus         9 ~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~-~G~~~F~~lA~~~S~~~sa~~GGdLG~~~~   87 (123)
T 3i6c_A            9 QGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIK-SGEEDFESLASQFSDCSSAKARGDLGAFSR   87 (123)
T ss_dssp             --CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHCSSGGGGGTTEEEEEET
T ss_pred             cCCCcEEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHH-cCcccHHHHHHHhCCCchhhhCCceeeEcC
Confidence            3455899999999983                   14567777788997 66 899999999999889999999999999


Q ss_pred             CCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeeh
Q 022496          144 GQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLS  178 (296)
Q Consensus       144 ~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~  178 (296)
                      ++|+|+|.+++|.|++|++| ||+|++|||||++++
T Consensus        88 ~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~E  123 (123)
T 3i6c_A           88 GQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  123 (123)
T ss_dssp             TTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEEECC
T ss_pred             CCCCHHHHHHHHhCCCCCccccEEECCEEEEEEEeC
Confidence            99999999999999999999 899999999999863

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=99.90  E-value=6.4e-24  Score=156.09  Aligned_cols=89  Identities=39%  Similarity=0.729  Sum_probs=83.5

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCcee-cee
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK  166 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~  166 (296)
                      ++++++||+++.+  ++|++++++|+ +|++|+++|++||+|+++.+||+|||+..++++|+|.++++.|++|++| ||+
T Consensus         2 ~~~~~~hIl~~~~--~~A~~i~~~l~-~g~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~pv~   78 (92)
T 1jns_A            2 KTAAALHILVKEE--KLALDLLEQIK-NGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLH   78 (92)
T ss_dssp             CEEEEEEEEESSH--HHHHHHHHHHH-HTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEE
T ss_pred             CEEEEEEEEeCCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhCCCCCcCCcEE
Confidence            5799999999965  45999999996 8899999999999999999999999999999999999999999999999 899


Q ss_pred             ecCcceEEEeehh
Q 022496          167 TKFGWHLLQVLSE  179 (296)
Q Consensus       167 ~~~G~~Ii~v~~~  179 (296)
                      |++||||+++.++
T Consensus        79 t~~G~hIi~v~~~   91 (92)
T 1jns_A           79 TQFGYHIIKVLYR   91 (92)
T ss_dssp             ETTEEEEEEEECC
T ss_pred             ECCEEEEEEEEee
Confidence            9999999999875

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=99.89  E-value=1.9e-23  Score=156.89  Aligned_cols=90  Identities=22%  Similarity=0.364  Sum_probs=83.9

Q ss_pred             eEEEeeEeeccc----------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCC
Q 022496           89 EILVQHLLVKED----------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP  158 (296)
Q Consensus        89 ~~~~~~Il~~~~----------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~  158 (296)
                      +++++||+++.+          ++++|++++++|+ +|++|+++|++||+|+++.+||+|||+..++|+++|.++++.|+
T Consensus         2 ~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~-~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~l~~~f~~a~~~l~   80 (103)
T 2pv1_A            2 ELNLSHILIPLPENPTSDQVNEAESQARAIVDQAR-NGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK   80 (103)
T ss_dssp             CEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCC
T ss_pred             cEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCcccccCCccceEchhhcCHHHHHHHHcCC
Confidence            699999999743          4678999999996 89999999999999999999999999999999999999999999


Q ss_pred             CCcee-ceeecCcceEEEeehh
Q 022496          159 LNKVA-RCKTKFGWHLLQVLSE  179 (296)
Q Consensus       159 ~G~vs-pv~~~~G~~Ii~v~~~  179 (296)
                      +|++| ||+|++||||+++.++
T Consensus        81 ~G~is~pv~t~~G~hii~v~~~  102 (103)
T 2pv1_A           81 KGDIVGPIRSGVGFHILKVNDL  102 (103)
T ss_dssp             TTCEEEEEEETTEEEEEEEEEE
T ss_pred             CCCeeccEEECCEEEEEEEEEE
Confidence            99999 7999999999999864

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=99.89  E-value=1.9e-23  Score=155.85  Aligned_cols=89  Identities=28%  Similarity=0.555  Sum_probs=82.6

Q ss_pred             CceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCcee---
Q 022496           87 DREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA---  163 (296)
Q Consensus        87 ~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs---  163 (296)
                      .++++++||+++.  +++|++++++|+ +|++|++||++||+|+ +.+||+|||++.++++++|.+++|.|++|++|   
T Consensus         5 ~~~v~~~~Ilv~~--~~~A~~i~~~l~-~G~~F~~lA~~~S~d~-a~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~   80 (101)
T 3ui4_A            5 SNAVKVRHILCEK--HGKIMEAMEKLK-SGMRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPV   80 (101)
T ss_dssp             GCEEEEEEEEESS--HHHHHHHHHHHH-TTCCHHHHHHHHCSSS-GGGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCC
T ss_pred             CcEEEEEEEEECC--HHHHHHHHHHHH-CCCCHHHHHHHhCcCc-hhcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCc
Confidence            4889999999995  455999999996 8999999999999995 78999999999999999999999999999998   


Q ss_pred             ----ceeecCcceEEEeehh
Q 022496          164 ----RCKTKFGWHLLQVLSE  179 (296)
Q Consensus       164 ----pv~~~~G~~Ii~v~~~  179 (296)
                          ||+|++|||||++.++
T Consensus        81 ~~~~pv~t~~G~hIikv~~r  100 (101)
T 3ui4_A           81 FTDPPVKTKFGYHIIMVEGR  100 (101)
T ss_dssp             BCSSCEEETTEEEEEEEEEE
T ss_pred             ccCCcEEECCEEEEEEEEee
Confidence                7999999999999875

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.89  E-value=6.7e-24  Score=160.75  Aligned_cols=95  Identities=31%  Similarity=0.506  Sum_probs=85.3

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++++++.+.+.++    +..+||||++.||..||||||+|||+..|....    ..++++++||+||.+|.||..++.
T Consensus         5 ~~i~~~~l~~~~~~~----~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~----~~l~~~~~ivvyc~~g~rs~~a~~   76 (108)
T 1gmx_A            5 ECINVADAHQKLQEK----EAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFM----RDNDFDTPVMVMCYHGNSSKGAAQ   76 (108)
T ss_dssp             EEECHHHHHHHHHTT----CCEEEECSCHHHHHHCEETTCEECCHHHHHHHH----HHSCTTSCEEEECSSSSHHHHHHH
T ss_pred             cccCHHHHHHHHhCC----CCEEEEcCCHHHHHhCCCccCEeCCHHHHHHHH----HhcCCCCCEEEEcCCCchHHHHHH
Confidence            457888998888763    589999999999999999999999999886642    336889999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhc
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      .|+..||+||++|+||+.+|...
T Consensus        77 ~L~~~G~~~v~~l~GG~~~W~~~   99 (108)
T 1gmx_A           77 YLLQQGYDVVYSIDGGFEAWQRQ   99 (108)
T ss_dssp             HHHHHTCSSEEEETTHHHHHHHH
T ss_pred             HHHHcCCceEEEecCCHHHHHHh
Confidence            99999999999999999999876

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.89  E-value=4.5e-24  Score=161.20  Aligned_cols=98  Identities=18%  Similarity=0.331  Sum_probs=78.2

Q ss_pred             HHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcC
Q 022496          192 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQG  271 (296)
Q Consensus       192 ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G  271 (296)
                      ++.+++.++  +++..+||||++.||..||||||+|||+..|...   +...++++++|||||.+|.||..++..|+.+|
T Consensus         2 el~~~l~~~--~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~---~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G   76 (106)
T 3hix_A            2 VLKSRLEWG--EPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR---ASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAG   76 (106)
T ss_dssp             -------------CCEEEECSCHHHHHTCEETTCEECCGGGHHHH---HHHHSCTTSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcC--CCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHH---HHhcCCCCCeEEEEECCCChHHHHHHHHHHcC
Confidence            345556533  1368999999999999999999999999988653   22346889999999999999999999999999


Q ss_pred             CCceEEccchHHHhhhccCCCCC
Q 022496          272 FRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       272 ~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      |+||++|+||+.+|..+..|+.+
T Consensus        77 ~~~v~~l~GG~~~W~~~g~~~~~   99 (106)
T 3hix_A           77 FEHVSELKGGLAAWKAIGGPTEL   99 (106)
T ss_dssp             CSCEEECTTHHHHHHHTTCCEEE
T ss_pred             CcCEEEecCCHHHHHHCCCCCCC
Confidence            99999999999999998877543

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=99.88  E-value=3.4e-23  Score=152.57  Aligned_cols=88  Identities=32%  Similarity=0.563  Sum_probs=82.7

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCccccccc-CCCCcHHHHHHHhcCCCCcee-ce
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVR-KGQLVPEFEEVAFTTPLNKVA-RC  165 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~-~~~l~~~~~~~~~~l~~G~vs-pv  165 (296)
                      ++++++||+++  ++++|++++++|+ +|.+|+++|++||+|+++.+||+|||++ .++++|+|.++++.|++|++| ||
T Consensus         3 ~~~~~~hIl~~--~~~~A~~i~~~l~-~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~pv   79 (93)
T 1zk6_A            3 GKIRASHILVA--DKKTAEEVEKKLK-KGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPV   79 (93)
T ss_dssp             CCEEEEEEEES--SHHHHHHHHHHHH-HTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCCCE
T ss_pred             CEEEEEEEEec--cHHHHHHHHHHHH-CCCCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcCCCCCccceE
Confidence            67999999999  4566999999996 7899999999999999999999999999 999999999999999999999 89


Q ss_pred             eecCcceEEEeeh
Q 022496          166 KTKFGWHLLQVLS  178 (296)
Q Consensus       166 ~~~~G~~Ii~v~~  178 (296)
                      ++++||||+++.+
T Consensus        80 ~t~~G~hIi~v~~   92 (93)
T 1zk6_A           80 KTQYGYHIIKKTE   92 (93)
T ss_dssp             ECSSCEEEEEEEE
T ss_pred             EECCEEEEEEEec
Confidence            9999999999864

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=99.88  E-value=1.4e-22  Score=164.30  Aligned_cols=93  Identities=28%  Similarity=0.458  Sum_probs=82.0

Q ss_pred             CCCceEEEeeEeecc-------------------chHHHHHHHHHHHhcCC-ccHHHHHHhhCCCCcccCCcccccccCC
Q 022496           85 GGDREILVQHLLVKE-------------------DDLNLLSELQRRVSQGR-EDLSDLAVEHSICPSKGEGGMLGWVRKG  144 (296)
Q Consensus        85 ~~~~~~~~~~Il~~~-------------------~~~~~a~~i~~~l~~~g-~~F~~la~~~S~d~~~~~gG~lg~~~~~  144 (296)
                      ..+.+++++||||+.                   ++++.+++|+++|+ +| .+|++||++||+|+++.+||+|||+..+
T Consensus        53 ~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~-~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~~  131 (166)
T 3tc5_A           53 GEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIK-SGEEDFESLASQFSDCSSAKARGDLGAFSRG  131 (166)
T ss_dssp             -CCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHCSSGGGGGTTEEEEECTT
T ss_pred             ccccceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHHHH-cCccCHHHHHHHhCcccHHhcCCccceeccc
Confidence            345899999999983                   14556667777997 56 8999999999998999999999999999


Q ss_pred             CCcHHHHHHHhcCCCCcee-ceeecCcceEEEeeh
Q 022496          145 QLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLS  178 (296)
Q Consensus       145 ~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~  178 (296)
                      +|+++|.+++|.|++|++| ||+|++|||||++++
T Consensus       132 ~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~e  166 (166)
T 3tc5_A          132 QMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  166 (166)
T ss_dssp             SSCHHHHHHHHHSCTTCBCCCEEETTEEEEEEECC
T ss_pred             ccCHHHHHHHHhCCCCCCcccEEECCEEEEEEEeC
Confidence            9999999999999999999 899999999999863

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=99.88  E-value=2.5e-23  Score=155.64  Aligned_cols=93  Identities=15%  Similarity=0.277  Sum_probs=86.7

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCCCcee-ce
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RC  165 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv  165 (296)
                      ++++++|||+...++++|++++++|+ +|++|++||++||+|+ ++.+||+|||++.++|+|+|.+++|. ++|++| ||
T Consensus         2 ~~~~~~hIl~~~~~~~~A~~i~~~l~-~G~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~pv   79 (102)
T 2kgj_A            2 QPQRTRYSIIQTKTEDEAKAVLDELN-KGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-EKGQLSGVI   79 (102)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHHH-HTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-STTCEEEEE
T ss_pred             CEEEEEeeecChhhHHHHHHHHHHHH-CCCCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-CCCCccccE
Confidence            57999999996667888999999996 7899999999999998 99999999999999999999999999 999999 89


Q ss_pred             eecCcceEEEeehhhhh
Q 022496          166 KTKFGWHLLQVLSEREA  182 (296)
Q Consensus       166 ~~~~G~~Ii~v~~~~~~  182 (296)
                      +|++|||||++.++++.
T Consensus        80 ~t~~G~hIikv~~~~~~   96 (102)
T 2kgj_A           80 KSSVGFLIVRLDDIQAA   96 (102)
T ss_dssp             EETTEEEEEEEEEEECS
T ss_pred             EECCEEEEEEEeecccc
Confidence            99999999999987764

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=99.88  E-value=1.8e-22  Score=149.75  Aligned_cols=89  Identities=33%  Similarity=0.538  Sum_probs=82.3

Q ss_pred             CceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCC-CcccCCcccccccCCCCcHHHHHHHhcCCCCcee-c
Q 022496           87 DREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSIC-PSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-R  164 (296)
Q Consensus        87 ~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d-~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-p  164 (296)
                      +++++++||+++  ++++|++++++|+ +|++|+++|++||+| +++.+||+|||+..++++++|.+++++|++|++| |
T Consensus         7 ~~~~~~~hIl~~--~~~~A~~i~~~l~-~g~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~p   83 (97)
T 2rqs_A            7 ADKIKCSHILVK--KQGEALAVQERLK-AGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEP   83 (97)
T ss_dssp             CCSEEEEEEEES--CHHHHHHHHHHHT-TTCCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTTCTTSCBCCC
T ss_pred             cceEEEEEEEeC--CHHHHHHHHHHHH-CCCCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHcCCCCCcccc
Confidence            478999999999  4566999999996 899999999999966 6999999999999999999999999999999999 8


Q ss_pred             eeecCcceEEEeeh
Q 022496          165 CKTKFGWHLLQVLS  178 (296)
Q Consensus       165 v~~~~G~~Ii~v~~  178 (296)
                      |++++||||+++.+
T Consensus        84 v~t~~G~hIi~v~d   97 (97)
T 2rqs_A           84 VKSEFGYHVIKRLG   97 (97)
T ss_dssp             EECSSCEEEEEECC
T ss_pred             EEECCEEEEEEEeC
Confidence            99999999999863

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=99.88  E-value=1.7e-22  Score=153.63  Aligned_cols=93  Identities=28%  Similarity=0.429  Sum_probs=85.1

Q ss_pred             CCCCceEEEeeEeeccc-------------hHHHHHHHHHHHhcCC-ccHHHHHHhhCCCC-cccCCcccccccCCCCcH
Q 022496           84 GGGDREILVQHLLVKED-------------DLNLLSELQRRVSQGR-EDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVP  148 (296)
Q Consensus        84 ~~~~~~~~~~~Il~~~~-------------~~~~a~~i~~~l~~~g-~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~  148 (296)
                      |..+++++++||+++.+             ++++|++++++|+ +| .+|+++|++||+|+ ++.+||+|||+..++|++
T Consensus         2 p~~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~-~g~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~   80 (111)
T 2jzv_A            2 PLGSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVS-KDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDK   80 (111)
T ss_dssp             CCCCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCH
T ss_pred             CCCCcEEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHH-cCcccHHHHHHHHCCCcchhhhCCccceecCCcccH
Confidence            34568999999999821             5778999999996 77 99999999999998 999999999999999999


Q ss_pred             HHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496          149 EFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  177 (296)
Q Consensus       149 ~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~  177 (296)
                      +|.+++|.|++|++| ||+|++|||||++.
T Consensus        81 ~f~~a~~~l~~G~is~pv~t~~G~hIi~v~  110 (111)
T 2jzv_A           81 DFEKALFKLKDGEVSEVVKSSFGYHIIKAD  110 (111)
T ss_dssp             HHHHHHHTCCTTCBCCCEEETTEEEEEEEC
T ss_pred             HHHHHHHhCCCCCcCccEEECCEEEEEEEe
Confidence            999999999999999 79999999999985

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.88  E-value=4.3e-23  Score=152.38  Aligned_cols=91  Identities=19%  Similarity=0.411  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHH
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQW  266 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~  266 (296)
                      .++++++.+.+.+     +..+||||++.||..||||||+|+|+.++....    ..+++ ++||+||.+|.||..++..
T Consensus         3 ~is~~~l~~~~~~-----~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~~----~~l~~-~~ivvyC~~g~rs~~a~~~   72 (94)
T 1wv9_A            3 KVRPEELPALLEE-----GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGE----HGLPR-RPLLLVCEKGLLSQVAALY   72 (94)
T ss_dssp             EECGGGHHHHHHT-----TCEEEECCCC--CCSCCSSCCEECCHHHHTTTC----CCCCS-SCEEEECSSSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-----CCEEEECCCHHHHhcccCCCCEECCHHHHHHHH----HhCCC-CCEEEEcCCCChHHHHHHH
Confidence            4677788887764     578999999999999999999999999987653    33578 9999999999999999999


Q ss_pred             HHHcCCCceEEccchHHHhhhc
Q 022496          267 LQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       267 L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      |+.+||+ |++|+||+.+|..+
T Consensus        73 L~~~G~~-v~~l~GG~~~W~~~   93 (94)
T 1wv9_A           73 LEAEGYE-AMSLEGGLQALTQG   93 (94)
T ss_dssp             HHHHTCC-EEEETTGGGCC---
T ss_pred             HHHcCCc-EEEEcccHHHHHhC
Confidence            9999998 99999999999864

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.88  E-value=8.4e-23  Score=161.34  Aligned_cols=102  Identities=23%  Similarity=0.474  Sum_probs=88.1

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh-hC--CCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-SS--LPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSL  261 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~-gh--IpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~  261 (296)
                      ...++.+++.+++.+.   ++..+||||++.||.. ||  ||||+|||+..+...  .....++++++|||||.+|.||.
T Consensus        22 ~~~is~~el~~~l~~~---~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~--~~~~~l~~~~~ivvyC~~G~rS~   96 (137)
T 1qxn_A           22 MVMLSPKDAYKLLQEN---PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL--LAKSGLDPEKPVVVFCKTAARAA   96 (137)
T ss_dssp             SEEECHHHHHHHHHHC---TTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH--HHHHCCCTTSCEEEECCSSSCHH
T ss_pred             CcccCHHHHHHHHhcC---CCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhH--HhhccCCCCCeEEEEcCCCcHHH
Confidence            3568899999988721   3689999999999999 99  999999999887541  01234689999999999999999


Q ss_pred             HHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          262 QVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       262 ~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .++..|+.+||+||++|+|||.+|..+..|
T Consensus        97 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p  126 (137)
T 1qxn_A           97 LAGKTLREYGFKTIYNSEGGMDKWLEEGLP  126 (137)
T ss_dssp             HHHHHHHHHTCSCEEEESSCHHHHHHTTCC
T ss_pred             HHHHHHHHcCCcceEEEcCcHHHHHHCCCC
Confidence            999999999999999999999999988765

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.87  E-value=3e-23  Score=162.20  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=84.0

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCC--------CCCccCCCCCCCcEEEEeCC
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW--------GPDITVKFDPQKDTYVMCHH  256 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~--------~~~~~~~~~~~~~iv~~C~~  256 (296)
                      ...++++++.+++..     +..+||||++.||..||||||+|||+..+...        ...+...++++++|||||.+
T Consensus        17 ~~~is~~e~~~~l~~-----~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~   91 (129)
T 1tq1_A           17 PSSVSVTVAHDLLLA-----GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQS   91 (129)
T ss_dssp             CEEEEHHHHHHHHHH-----TCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESS
T ss_pred             CcccCHHHHHHHhcC-----CCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCC
Confidence            356888888888862     57899999999999999999999999433210        01122346889999999999


Q ss_pred             ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          257 GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       257 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |.||..++..|+.+||+||++|+|||.+|.....|
T Consensus        92 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p  126 (129)
T 1tq1_A           92 GGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLP  126 (129)
T ss_dssp             CSHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCC
Confidence            99999999999999999999999999999987544

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.4e-22  Score=159.02  Aligned_cols=107  Identities=18%  Similarity=0.316  Sum_probs=89.4

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC----Cc-----cCCCCCCCcEEEEeCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----DI-----TVKFDPQKDTYVMCHH  256 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~----~~-----~~~~~~~~~iv~~C~~  256 (296)
                      ..++.+++.+++.++  .++..+||||++.||..||||||+|||+..+.....    .+     ...++++++|||||.+
T Consensus        23 ~~is~~el~~~l~~~--~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~  100 (139)
T 3d1p_A           23 QSYSFEDMKRIVGKH--DPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCAS  100 (139)
T ss_dssp             EECCHHHHHHHHHHT--CTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSS
T ss_pred             ceecHHHHHHHHhCC--CCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCC
Confidence            568899999888642  136889999999999999999999999998854321    00     0235789999999999


Q ss_pred             ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCCCC
Q 022496          257 GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       257 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      |.||..++..|+.+||+||++|+|||.+|.....|.+.
T Consensus       101 G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A          101 GKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            99999999999999999999999999999998777543

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.87  E-value=1.3e-22  Score=160.59  Aligned_cols=106  Identities=20%  Similarity=0.354  Sum_probs=88.0

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh-hCCCCceecccccccCCCC----CccCCCCCCCcEEEEeCCChh
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-SSLPGFQVLPLRQFGSWGP----DITVKFDPQKDTYVMCHHGMR  259 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~-ghIpgA~~ip~~~l~~~~~----~~~~~~~~~~~iv~~C~~G~r  259 (296)
                      ...++.+++.+.+.++  .++..+||||++.||.. ||||||+|||+..+.....    .....++++++|||||.+|.|
T Consensus        21 ~~~is~~~l~~~l~~~--~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~ivvyC~~G~r   98 (139)
T 2hhg_A           21 IETLTTADAIALHKSG--ASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPYAKPIFQEDKKFVFYCAGGLR   98 (139)
T ss_dssp             SEEECHHHHHHHHHTT--CTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTTSTTCCGGGGSSSEEEEECSSSHH
T ss_pred             cCccCHHHHHHHHhcc--CCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCccchhhhccCCCCCeEEEECCCChH
Confidence            3568899999988731  13678999999999998 9999999999987743211    112346789999999999999


Q ss_pred             HHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          260 SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       260 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      |..+++.|+.+||+||++|+|||.+|..+..|.
T Consensus        99 s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~  131 (139)
T 2hhg_A           99 SALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPI  131 (139)
T ss_dssp             HHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCe
Confidence            999999999999999999999999999876553

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.87  E-value=1.1e-22  Score=161.44  Aligned_cols=99  Identities=18%  Similarity=0.345  Sum_probs=86.4

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  267 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L  267 (296)
                      |+++++.+++.++.  ++..+||||++.||..||||||+|||+..|....   ...++++++|||||.+|.||..+++.|
T Consensus         2 Is~~el~~~l~~~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~---~~~l~~~~~ivvyC~~g~rs~~aa~~L   76 (141)
T 3ilm_A            2 SDAHVLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRA---SSSLEKSRDIYVYGAGDEQTSQAVNLL   76 (141)
T ss_dssp             CCHHHHHHHHHHSC--SCEEEEECSCHHHHHHCEETTCEECCGGGHHHHH---HTTSCTTSEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCC--CCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHHH---HhcCCCCCeEEEEECCChHHHHHHHHH
Confidence            67888888887541  3579999999999999999999999999886542   234688999999999999999999999


Q ss_pred             HHcCCCceEEccchHHHhhhccCC
Q 022496          268 QTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       268 ~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +.+||+||++|+||+.+|..+..|
T Consensus        77 ~~~G~~~v~~l~GG~~~W~~~g~p  100 (141)
T 3ilm_A           77 RSAGFEHVSELKGGLAAWKAIGGP  100 (141)
T ss_dssp             HHTTCCSEEECTTHHHHHHHTTCC
T ss_pred             HHcCCCCEEEecCHHHHHHHCCCC
Confidence            999999999999999999987654

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.86  E-value=8e-23  Score=158.70  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=89.1

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHH-HhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChh--HHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMR--SLQ  262 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey-~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~r--s~~  262 (296)
                      ..++.+++.+.+.++.  ++..+||||++.|| ..||||||+|||+..|....    ..++++++|||||.+|.|  |..
T Consensus        15 ~~is~~el~~~l~~~~--~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~~----~~l~~~~~ivvyC~~g~r~~s~~   88 (124)
T 3flh_A           15 LYIDHHTVLADMQNAT--GKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRI----GELDPAKTYVVYDWTGGTTLGKT   88 (124)
T ss_dssp             TEECHHHHHHHHHHTC--CCEEEEECCCSCHHHHCCEETTCEECCHHHHHHHG----GGSCTTSEEEEECSSSSCSHHHH
T ss_pred             ceecHHHHHHHHHcCC--CCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHHH----hcCCCCCeEEEEeCCCCchHHHH
Confidence            4588999999887641  24899999999998 99999999999999987643    346889999999999999  899


Q ss_pred             HHHHHHHcCCCceEEccchHHHhhhccCCCCC
Q 022496          263 VAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       263 aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      ++..|+.+||+ |++|+||+.+|..+..|..|
T Consensus        89 a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~  119 (124)
T 3flh_A           89 ALLVLLSAGFE-AYELAGALEGWKGMQLPLEH  119 (124)
T ss_dssp             HHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC
T ss_pred             HHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCc
Confidence            99999999996 99999999999999888655

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.86  E-value=1.5e-21  Score=155.40  Aligned_cols=100  Identities=18%  Similarity=0.261  Sum_probs=86.4

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCC--hhHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG--MRSLQV  263 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G--~rs~~a  263 (296)
                      ..++.+++.+.+.++.  ++..+||||++.||..||||||+|||+..+...   ....++++++|||||.+|  .||..+
T Consensus        16 ~~is~~el~~~l~~~~--~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~---~~~~l~~~~~ivvyC~~g~~~rs~~a   90 (144)
T 3nhv_A           16 YETDIADLSIDIKKGY--EGIIVVDVRDAEAYKECHIPTAISIPGNKINED---TTKRLSKEKVIITYCWGPACNGATKA   90 (144)
T ss_dssp             TEEEHHHHHHHHHTTC--CSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT---TTTTCCTTSEEEEECSCTTCCHHHHH
T ss_pred             cccCHHHHHHHHHcCC--CCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH---HHhhCCCCCeEEEEECCCCccHHHHH
Confidence            4578889999887641  368999999999999999999999999988642   234568999999999999  699999


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +..|+.+|| +|++|+|||.+|..+..|
T Consensus        91 a~~L~~~G~-~v~~l~GG~~~W~~~g~p  117 (144)
T 3nhv_A           91 AAKFAQLGF-RVKELIGGIEYWRKENGE  117 (144)
T ss_dssp             HHHHHHTTC-EEEEEESHHHHHHHTTCC
T ss_pred             HHHHHHCCC-eEEEeCCcHHHHHHCCCC
Confidence            999999999 699999999999987654

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=99.85  E-value=4.8e-22  Score=156.76  Aligned_cols=92  Identities=22%  Similarity=0.449  Sum_probs=82.5

Q ss_pred             CCCceEEEeeEeeccc-----------------------hHHHHHHHHHHHhcCCc-cHHHHHHhhCCCCcccCCccccc
Q 022496           85 GGDREILVQHLLVKED-----------------------DLNLLSELQRRVSQGRE-DLSDLAVEHSICPSKGEGGMLGW  140 (296)
Q Consensus        85 ~~~~~~~~~~Il~~~~-----------------------~~~~a~~i~~~l~~~g~-~F~~la~~~S~d~~~~~gG~lg~  140 (296)
                      ..+++++++|||++.+                       ++++|++|+++|+ .|. +|++||++||+|+++.+||+|||
T Consensus        22 ~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~-~G~~~F~~lA~~~S~~~sa~~GGdLG~  100 (139)
T 1j6y_A           22 ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIV-SGKANFEEVATRVSDCSSAKRGGDLGS  100 (139)
T ss_dssp             SSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHH-SSCCCCHHHHHHSSCHHHHHTCSEEEE
T ss_pred             CCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHH-cCcccHHHHHHHhccCchhhcCCeeee
Confidence            3448899999999742                       3566889999996 777 69999999999888899999999


Q ss_pred             ccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496          141 VRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  177 (296)
Q Consensus       141 ~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~  177 (296)
                      +..++|+|+|.+++|.|++|++| ||+|++|||||++.
T Consensus       101 ~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~  138 (139)
T 1j6y_A          101 FGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT  138 (139)
T ss_dssp             CSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred             ecccccCHHHHHHHHcCCCCCccccEEECCEEEEEEEe
Confidence            99999999999999999999999 89999999999875

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.84  E-value=4.7e-22  Score=151.07  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=74.9

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      ++..+||||++.||..||||||+|+|+..+......  ..++++++|||||.+|.||..++..|+.+||++ ++|+||+.
T Consensus        15 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~--~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~   91 (110)
T 2k0z_A           15 NDFIVVDVRELDEYEELHLPNATLISVNDQEKLADF--LSQHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY   91 (110)
T ss_dssp             GGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHHHH--HHSCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred             CCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHHHh--cccCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence            468999999999999999999999999988653211  136789999999999999999999999999999 99999999


Q ss_pred             HhhhccCC
Q 022496          284 AYATKVDP  291 (296)
Q Consensus       284 ~W~~~~~~  291 (296)
                      +|..+..|
T Consensus        92 ~W~~~g~p   99 (110)
T 2k0z_A           92 DFEKYGFR   99 (110)
T ss_dssp             GTTTTTCC
T ss_pred             HHHHCCCc
Confidence            99987654

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.84  E-value=2.9e-22  Score=145.05  Aligned_cols=80  Identities=28%  Similarity=0.390  Sum_probs=70.5

Q ss_pred             cEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHh
Q 022496          206 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY  285 (296)
Q Consensus       206 ~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W  285 (296)
                      ..+||||++.||..||||||+|+|+.++......+  ..+++++||+||.+|.||..++..|+++||+||+++ |||.+|
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l--~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~w   78 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATA--VPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDI   78 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCHHHHHHHHHHH--CCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTTC
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCHHHHHHHHHHh--CCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHHH
Confidence            57999999999999999999999999886543222  137899999999999999999999999999999999 999999


Q ss_pred             hhc
Q 022496          286 ATK  288 (296)
Q Consensus       286 ~~~  288 (296)
                      ...
T Consensus        79 ~~~   81 (85)
T 2jtq_A           79 AMP   81 (85)
T ss_dssp             CSC
T ss_pred             hcc
Confidence            753

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.83  E-value=7.5e-22  Score=158.59  Aligned_cols=102  Identities=15%  Similarity=0.203  Sum_probs=84.6

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeC-CChhHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCH-HGMRSLQVA  264 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~-~G~rs~~aa  264 (296)
                      ..++.+++.+.+.+    ++..+||||++.||..||||||+|||+..+......+...++++++|||||. +|.||..++
T Consensus        28 ~~Is~~el~~~l~~----~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~~~~l~~~~~~~~~iVvyC~~~G~rs~~aa  103 (152)
T 1t3k_A           28 SYITSTQLLPLHRR----PNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTCA  103 (152)
T ss_dssp             EEECTTTTTTCCCC----TTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSSHHHHH
T ss_pred             ceECHHHHHHHhcC----CCEEEEECCChhhccCccCCCCEECCHHHHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHHH
Confidence            44667777666653    3678999999999999999999999999887654444444578999999999 999999999


Q ss_pred             HHHHH--------cCCCceEEccchHHHhhhccCC
Q 022496          265 QWLQT--------QGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       265 ~~L~~--------~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ..|.+        .||+||++|+|||.+|..+..|
T Consensus       104 ~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p  138 (152)
T 1t3k_A          104 RRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKP  138 (152)
T ss_dssp             HHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCc
Confidence            88854        7999999999999999987554

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.83  E-value=7.8e-22  Score=154.70  Aligned_cols=97  Identities=22%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCC-----------------------------
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-----------------------------  236 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~-----------------------------  236 (296)
                      ..++.+++.+   .    ++..+||||++.||..||||||+|||+..+...                             
T Consensus         5 ~~i~~~el~~---~----~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (134)
T 3g5j_A            5 SVIKIEKALK---L----DKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKD   77 (134)
T ss_dssp             CEECHHHHTT---C----TTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHH
T ss_pred             cccCHHHHHh---c----CCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHH
Confidence            4466666643   2    478999999999999999999999999653210                             


Q ss_pred             CCCccCCCCCC-CcEEEEe-CCChhHHHHHHHHHHcCCCceEEccchHHHhhhccC
Q 022496          237 GPDITVKFDPQ-KDTYVMC-HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       237 ~~~~~~~~~~~-~~iv~~C-~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      .......++++ ++||+|| .+|.||..+++.|+.+|| ||++|+|||.+|.+.+.
T Consensus        78 ~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~~  132 (134)
T 3g5j_A           78 IYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNFVL  132 (134)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHHhh
Confidence            00011234677 9999999 599999999999999999 99999999999997653

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.1e-20  Score=168.52  Aligned_cols=105  Identities=18%  Similarity=0.193  Sum_probs=90.0

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHH-----------HhhCCCCceecccccccCCCCCccC-----------C
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPDITV-----------K  243 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey-----------~~ghIpgA~~ip~~~l~~~~~~~~~-----------~  243 (296)
                      ..++.+++.+.+.+    ++..+||||++.||           ..||||||+|||+.++.+..+.+..           .
T Consensus       175 ~~i~~~e~~~~~~~----~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~  250 (302)
T 3olh_A          175 FIKTYEDIKENLES----RRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKK  250 (302)
T ss_dssp             GEECHHHHHHHHHH----CCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTT
T ss_pred             ceecHHHHHHhhcC----CCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcC
Confidence            34778888888865    36799999999999           7899999999999998764332211           4


Q ss_pred             CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCCCC
Q 022496          244 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       244 ~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      ++++++||+||++|.||..++..|+.+||+||++|+|||.+|.....|.+.
T Consensus       251 ~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~~~  301 (302)
T 3olh_A          251 VDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDV  301 (302)
T ss_dssp             CCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCCC-
T ss_pred             CCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCCCC
Confidence            688999999999999999999999999999999999999999999988764

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=99.83  E-value=1.1e-20  Score=155.37  Aligned_cols=91  Identities=38%  Similarity=0.612  Sum_probs=81.5

Q ss_pred             CCceEEEeeEeeccc--------------------hHHHHHHHHHHHhcCCc-cHHHHHHhhCCCCcccCCcccccccCC
Q 022496           86 GDREILVQHLLVKED--------------------DLNLLSELQRRVSQGRE-DLSDLAVEHSICPSKGEGGMLGWVRKG  144 (296)
Q Consensus        86 ~~~~~~~~~Il~~~~--------------------~~~~a~~i~~~l~~~g~-~F~~la~~~S~d~~~~~gG~lg~~~~~  144 (296)
                      .+++++++|||++.+                    +++.+++|+++|+ +|. +|++||++||+|+++.+||+|||+..+
T Consensus        64 ~~~~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~-~G~~~F~~lA~~~S~~~sa~~GGdLG~~~~~  142 (177)
T 1yw5_A           64 EDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERIL-SGEVKLSELANTESDCSSHDRGGDLGFFSKG  142 (177)
T ss_dssp             TTSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHCCSGGGGGTTEEEEECTT
T ss_pred             CcceEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHH-cCchhHHHHHHHhCCCcchhcCCccceeccc
Confidence            457899999999741                    3445678889996 776 899999999999999999999999999


Q ss_pred             CCcHHHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496          145 QLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  177 (296)
Q Consensus       145 ~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~  177 (296)
                      +|+++|.+++|.|++|++| ||+|++|||||++.
T Consensus       143 ~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIikv~  176 (177)
T 1yw5_A          143 QMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRT  176 (177)
T ss_dssp             SSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEEC
T ss_pred             ccCHHHHHHHHcCCCCCcCCeEEECCEEEEEEEe
Confidence            9999999999999999999 89999999999985

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.83  E-value=3.6e-21  Score=167.27  Aligned_cols=103  Identities=21%  Similarity=0.398  Sum_probs=88.7

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccC--CCCCCCcEEEEeCCChhHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV--KFDPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~--~~~~~~~iv~~C~~G~rs~~a  263 (296)
                      ..++++++.+++.+    ++.++||||++.||..||||||+|+|+..+.+....+..  ..+++++||+||.+|.||..+
T Consensus       122 ~~Is~~el~~ll~~----~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~~~~l~~~l~~~kdk~IVvyC~~G~RS~~A  197 (265)
T 4f67_A          122 TYLSPEEWHQFIQD----PNVILLDTRNDYEYELGTFKNAINPDIENFREFPDYVQRNLIDKKDKKIAMFCTGGIRCEKT  197 (265)
T ss_dssp             CEECHHHHHHHTTC----TTSEEEECSCHHHHHHEEETTCBCCCCSSGGGHHHHHHHHTGGGTTSCEEEECSSSHHHHHH
T ss_pred             ceECHHHHHHHhcC----CCeEEEEeCCchHhhcCcCCCCEeCCHHHHHhhHHHHHHhhhhCCCCeEEEEeCCChHHHHH
Confidence            56889999999876    378999999999999999999999999987653221111  126899999999999999999


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      +..|+.+||+||++|+|||.+|.++.++.
T Consensus       198 a~~L~~~Gf~nV~~L~GGi~aW~~~~~~~  226 (265)
T 4f67_A          198 TAYMKELGFEHVYQLHDGILNYLESIPES  226 (265)
T ss_dssp             HHHHHHHTCSSEEEETTHHHHHHHHSCTT
T ss_pred             HHHHHHcCCCCEEEecCHHHHHHHhcCcc
Confidence            99999999999999999999999988765

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.4e-20  Score=150.49  Aligned_cols=98  Identities=19%  Similarity=0.241  Sum_probs=75.6

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh-hCC------CCceecccccccCC-----CCCcc-----CCCCCCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-SSL------PGFQVLPLRQFGSW-----GPDIT-----VKFDPQK  248 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~-ghI------pgA~~ip~~~l~~~-----~~~~~-----~~~~~~~  248 (296)
                      ..++++++.+.+.++   ++.++||||++.||.. |||      |||+|||+..+...     ...+.     ..+++++
T Consensus         5 ~~is~~el~~~l~~~---~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   81 (148)
T 2fsx_A            5 GDITPLQAWEMLSDN---PRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHER   81 (148)
T ss_dssp             EEECHHHHHHHHHHC---TTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBCTTSCBCTTHHHHHHHHCC-------C
T ss_pred             ccCCHHHHHHHHhcC---CCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeeccccccCHHHHHHHHHHHhhccCCCCC
Confidence            357888998888742   3689999999999997 999      99999999872110     00111     1247899


Q ss_pred             cEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhh
Q 022496          249 DTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA  286 (296)
Q Consensus       249 ~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~  286 (296)
                      +|||||.+|.||..++..|+.+||+||++|+|||.+|.
T Consensus        82 ~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~  119 (148)
T 2fsx_A           82 PVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHL  119 (148)
T ss_dssp             CEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCC
T ss_pred             EEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhh
Confidence            99999999999999999999999999999999996554

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.79  E-value=6.9e-20  Score=148.44  Aligned_cols=107  Identities=17%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             hcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCCC-CCccCCCCCCCcE--EEEeC-CCh
Q 022496          185 LQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG-PDITVKFDPQKDT--YVMCH-HGM  258 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~-~~~~~~~~~~~~i--v~~C~-~G~  258 (296)
                      ...++.+++.+++.++.-  .++..+||||++.||..||||||+|||+..+.... .......+++++|  |+||. +|.
T Consensus        22 ~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~ivvv~yC~~sg~  101 (161)
T 1c25_A           22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSE  101 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTTSCCCCCTTSEEEEEEECSSSSS
T ss_pred             cceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHHhhhhhccCCCCCeEEEEEcCCCCc
Confidence            356889999998875210  02678999999999999999999999998764321 1111112577886  67899 999


Q ss_pred             hHHHHHHHHHHc----------CCCceEEccchHHHhhhccCC
Q 022496          259 RSLQVAQWLQTQ----------GFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       259 rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ||..++..|++.          ||+||++|+||+.+|..+..|
T Consensus       102 rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~  144 (161)
T 1c25_A          102 RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQS  144 (161)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGG
T ss_pred             chHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHccc
Confidence            999999999864          999999999999999987654

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.79  E-value=3.1e-19  Score=156.54  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=84.8

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHH--------hhCCCCceecccccccCCCC------C---ccC--CCCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGP------D---ITV--KFDP  246 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~--------~ghIpgA~~ip~~~l~~~~~------~---~~~--~~~~  246 (296)
                      ..++.+++.+.+.++    +..+||||++.||.        .||||||+|+|+..+.+...      .   +..  .+++
T Consensus       147 ~~i~~~~l~~~l~~~----~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~  222 (271)
T 1e0c_A          147 PTASRDYLLGRLGAA----DLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITP  222 (271)
T ss_dssp             TBCCHHHHHHHTTCT----TEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCT
T ss_pred             ccccHHHHHHHhcCC----CcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHcCCCC
Confidence            347888898888763    68899999999999        89999999999998764311      0   112  4689


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      +++||+||.+|.||..++..|+.+||+||++|+|||.+|..+
T Consensus       223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~  264 (271)
T 1e0c_A          223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNH  264 (271)
T ss_dssp             TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTC
T ss_pred             CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcC
Confidence            999999999999999999999999999999999999999976

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.78  E-value=3.9e-20  Score=145.40  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhh-CC------CCceecccccccC--CCCCccCC--CCCCCcEEEEe
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALS-SL------PGFQVLPLRQFGS--WGPDITVK--FDPQKDTYVMC  254 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~g-hI------pgA~~ip~~~l~~--~~~~~~~~--~~~~~~iv~~C  254 (296)
                      ..++.+++.+++.+.   ++..+||||++.||..+ |+      |||+|||+..+..  ....+...  ++++++|||||
T Consensus         5 ~~is~~e~~~~l~~~---~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C   81 (134)
T 1vee_A            5 SSGSAKNAYTKLGTD---DNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILD   81 (134)
T ss_dssp             CBCCHHHHHHHHHHC---TTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEEC
T ss_pred             CccCHHHHHHHHHhC---CCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEe
Confidence            458889998888632   36789999999999863 33      7999999876421  00111111  26899999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccchH---HHhhhccCC
Q 022496          255 HHGMRSLQVAQWLQTQGFRRVFNVSGGI---HAYATKVDP  291 (296)
Q Consensus       255 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~---~~W~~~~~~  291 (296)
                      ++|.||..++..|+.+||+||++|.||+   .+|..+..|
T Consensus        82 ~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p  121 (134)
T 1vee_A           82 KFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLP  121 (134)
T ss_dssp             SSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCC
T ss_pred             CCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCC
Confidence            9999999999999999999999999999   789987655

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.78  E-value=3.5e-19  Score=157.04  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=81.3

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHH-----------HhhCCCCceecccccccCCCCC------cc-----CC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPD------IT-----VK  243 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey-----------~~ghIpgA~~ip~~~l~~~~~~------~~-----~~  243 (296)
                      ..++.+++.+.+.++    +..+||||++.||           ..||||||+|||+.++... +.      +.     ..
T Consensus       152 ~~i~~~e~~~~~~~~----~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~-~~~~~~~~l~~~~~~~~  226 (280)
T 1urh_A          152 AVVKVTDVLLASHEN----TAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-GELKTTDELDAIFFGRG  226 (280)
T ss_dssp             GBCCHHHHHHHHHHT----CSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSS-SSBCCHHHHHHHHHTTT
T ss_pred             cEEcHHHHHHHhcCC----CcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcC-CccCCHHHHHHHHHHcC
Confidence            458889998888753    6799999999999           6899999999999988751 11      11     14


Q ss_pred             CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          244 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       244 ~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      ++++++||+||.+|.||..++..|+.+||+||++|+|||.+|..+
T Consensus       227 ~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~  271 (280)
T 1urh_A          227 VSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGAR  271 (280)
T ss_dssp             CCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC----
T ss_pred             CCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcC
Confidence            688999999999999999999999999999999999999999874

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.78  E-value=3.5e-19  Score=158.31  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHH------------HhhCCCCceecccccccCCCCCcc---------C--
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV------------ALSSLPGFQVLPLRQFGSWGPDIT---------V--  242 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey------------~~ghIpgA~~ip~~~l~~~~~~~~---------~--  242 (296)
                      ..++.+++.+.+.+    ++..+||||++.||            ..||||||+|||+.++....+.+.         .  
T Consensus       160 ~~i~~~e~~~~~~~----~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~  235 (296)
T 1rhs_A          160 LLKTYEQVLENLES----KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAK  235 (296)
T ss_dssp             GEECHHHHHHHHHH----CCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHT
T ss_pred             eEEcHHHHHHHhcC----CCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHc
Confidence            45888899888865    36789999999999            789999999999998865322111         1  


Q ss_pred             CCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          243 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       243 ~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      .++++++||+||.+|.||..++..|+.+||+||++|+|||.+|...
T Consensus       236 ~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~  281 (296)
T 1rhs_A          236 KVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHR  281 (296)
T ss_dssp             TCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHH
T ss_pred             CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcC
Confidence            3688999999999999999999999999999999999999999874

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.77  E-value=2.7e-19  Score=143.66  Aligned_cols=101  Identities=15%  Similarity=0.161  Sum_probs=79.3

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCC-C--C-----Cc-----cC--CCCCCCcE
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-G--P-----DI-----TV--KFDPQKDT  250 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~-~--~-----~~-----~~--~~~~~~~i  250 (296)
                      ..++.+++.+++++.  .++..+||||++.||..||||||+|||+..+... .  +     .+     ..  .++++++|
T Consensus         4 ~~Is~~~l~~~l~~~--~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~i   81 (153)
T 2vsw_A            4 TQIVTERLVALLESG--TEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKV   81 (153)
T ss_dssp             EEECHHHHHHHHTST--TCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEE
T ss_pred             ccccHHHHHHHHhcC--CCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeE
Confidence            457888999988742  1367899999999999999999999999876211 0  0     00     01  24789999


Q ss_pred             EEEeCCChhHHHH------HHHHHH--cCCCceEEccchHHHhhhc
Q 022496          251 YVMCHHGMRSLQV------AQWLQT--QGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       251 v~~C~~G~rs~~a------a~~L~~--~G~~~v~~l~GG~~~W~~~  288 (296)
                      ||||.+|.||..+      +..|+.  .||++|++|+|||.+|...
T Consensus        82 Vvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~  127 (153)
T 2vsw_A           82 VVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRC  127 (153)
T ss_dssp             EEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHH
T ss_pred             EEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHh
Confidence            9999999998766      577774  4999999999999999875

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.77  E-value=3.7e-19  Score=150.42  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=79.4

Q ss_pred             hcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceeccccc-ccCCCCC-ccCCCCCCC--cEEEEeC-CC
Q 022496          185 LQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQ-FGSWGPD-ITVKFDPQK--DTYVMCH-HG  257 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~-l~~~~~~-~~~~~~~~~--~iv~~C~-~G  257 (296)
                      ...++++++.+++.++..  .++..+||||++.||..||||||+|||+.+ +...... -....++++  +|||||. +|
T Consensus        56 ~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~l~~~~~~~~~~~k~~~VVvyC~~SG  135 (216)
T 3op3_A           56 LKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSS  135 (216)
T ss_dssp             SEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHHHTSSCCCCSSTTSEEEEEEECCC--
T ss_pred             CCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHHHhhccccccccCCCCEEEEEeCCCC
Confidence            466899999999976310  025789999999999999999999999986 3221100 001123344  4999999 99


Q ss_pred             hhHHHHHHHHHHc----------CCCceEEccchHHHhhhcc
Q 022496          258 MRSLQVAQWLQTQ----------GFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       258 ~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~~  289 (296)
                      .||..++..|+..          ||++|++|+|||.+|..+.
T Consensus       136 ~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~  177 (216)
T 3op3_A          136 ERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEY  177 (216)
T ss_dssp             CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTC
T ss_pred             hHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhC
Confidence            9999999999987          8999999999999999753

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.77  E-value=1.3e-19  Score=145.48  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=79.8

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccC-CCCCccCCCC-CC-CcEEEEe-CCChhHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-WGPDITVKFD-PQ-KDTYVMC-HHGMRSL  261 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~-~~~~~~~~~~-~~-~~iv~~C-~~G~rs~  261 (296)
                      ..++++++.+++.+....++..+||||++ ||..||||||+|||+..+.. ....+...+. ++ +.||+|| .+|.||.
T Consensus         5 ~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~~~~l~~~l~~~~~~~vV~yC~~sg~rs~   83 (152)
T 2j6p_A            5 TYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEMYEKLAKTLFEEKKELAVFHCAQSLVRAP   83 (152)
T ss_dssp             EEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHHHHHHHHHHHHTTCCEEEEECSSSSSHHH
T ss_pred             CccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHHHHHHHHHhcccCCCEEEEEcCCCCCccH
Confidence            45788888888865100015789999999 99999999999999987653 1111111111 34 4577789 7999999


Q ss_pred             HHH----HHHHHcCC--CceEEccchHHHhhhccCCCC
Q 022496          262 QVA----QWLQTQGF--RRVFNVSGGIHAYATKVDPSI  293 (296)
Q Consensus       262 ~aa----~~L~~~G~--~~v~~l~GG~~~W~~~~~~~~  293 (296)
                      .++    ..|+.+||  .+|++|+|||.+|.....+.+
T Consensus        84 ~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~  121 (152)
T 2j6p_A           84 KGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVR  121 (152)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCC
Confidence            888    77888997  589999999999998877654

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.76  E-value=6.6e-19  Score=158.04  Aligned_cols=97  Identities=24%  Similarity=0.279  Sum_probs=82.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh----------------hCCCCceecccccccCCCCC---------c
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------------SSLPGFQVLPLRQFGSWGPD---------I  240 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~----------------ghIpgA~~ip~~~l~~~~~~---------~  240 (296)
                      ..++.+++.+.+.+     . .+||||++.||..                ||||||+|||+.++.+..+.         .
T Consensus       179 ~~i~~~el~~~l~~-----~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~  252 (318)
T 3hzu_A          179 IRAFRDDVLAILGA-----Q-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERL  252 (318)
T ss_dssp             TBCCHHHHHHHTTT-----S-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHH
T ss_pred             ccccHHHHHHhhcC-----C-eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHH
Confidence            34778899888864     2 8999999999998                99999999999876542221         1


Q ss_pred             cCCCCCCCcEEEEeCCChhHHHHHHHHHH-cCCCceEEccchHHHhhhc
Q 022496          241 TVKFDPQKDTYVMCHHGMRSLQVAQWLQT-QGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       241 ~~~~~~~~~iv~~C~~G~rs~~aa~~L~~-~G~~~v~~l~GG~~~W~~~  288 (296)
                      +..++++++||+||++|.||..++..|++ +||+||++|+|||.+|..+
T Consensus       253 ~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~  301 (318)
T 3hzu_A          253 YDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNA  301 (318)
T ss_dssp             TTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTS
T ss_pred             hcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcC
Confidence            23578999999999999999999999997 9999999999999999964

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.76  E-value=2.8e-19  Score=151.26  Aligned_cols=106  Identities=14%  Similarity=0.211  Sum_probs=83.6

Q ss_pred             hcCCCHHHHHHHhcCCC--CCCCcEEEecCChHHHHhhCCCCceecccccccCC-CCCccCCC--CCCCcE--EEEeC-C
Q 022496          185 LQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-GPDITVKF--DPQKDT--YVMCH-H  256 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~--~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~-~~~~~~~~--~~~~~i--v~~C~-~  256 (296)
                      ...++.+++.+++.++.  ..++..+||||++.||..||||||+|||+..+... ... ...+  +++++|  |+||. +
T Consensus        43 ~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~~~~-~~~l~~~~d~~ivvVvyC~~s  121 (211)
T 1qb0_A           43 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK-SPIAPCSLDKRVILIFHCEFS  121 (211)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHT-TTCCCSSTTSEEEEEEECSSS
T ss_pred             CCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHhhhh-hhhccccCCCCeEEEEECCCC
Confidence            45688999999887521  01257899999999999999999999999876432 110 0123  378887  88999 9


Q ss_pred             ChhHHHHHHHHHH----------cCCCceEEccchHHHhhhccCC
Q 022496          257 GMRSLQVAQWLQT----------QGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       257 G~rs~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |.||..++..|++          +||+||++|+|||.+|..+..+
T Consensus       122 G~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~  166 (211)
T 1qb0_A          122 SERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPN  166 (211)
T ss_dssp             SSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGG
T ss_pred             CccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCcc
Confidence            9999999999986          6999999999999999876654

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.76  E-value=2.7e-19  Score=146.93  Aligned_cols=106  Identities=14%  Similarity=0.190  Sum_probs=80.2

Q ss_pred             hcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCC-CC--CccCCCCCCCcEEE--EeC-C
Q 022496          185 LQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-GP--DITVKFDPQKDTYV--MCH-H  256 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~-~~--~~~~~~~~~~~iv~--~C~-~  256 (296)
                      ...++.+++.+.+.++.-  .++..+||||++.||..||||||+|||+..+... ..  .+. ..+++++|||  ||. +
T Consensus        23 ~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~~~~~~-~~~~~~~ivvv~yC~~~  101 (175)
T 2a2k_A           23 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIA-PCSLDKRVILIFHSEFS  101 (175)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHSSCCC-C----CEEEEEEECSSS
T ss_pred             CceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHhhhhhhhc-cccCCCCeEEEEECCCC
Confidence            356889999998875210  0257899999999999999999999999876432 10  111 1237888855  699 9


Q ss_pred             ChhHHHHHHHHHH----------cCCCceEEccchHHHhhhccCC
Q 022496          257 GMRSLQVAQWLQT----------QGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       257 G~rs~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |.||..++..|++          +||+||++|+||+.+|..+..|
T Consensus       102 g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~  146 (175)
T 2a2k_A          102 SERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPN  146 (175)
T ss_dssp             SSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGG
T ss_pred             CCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCcc
Confidence            9999999999986          4999999999999999977654

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.76  E-value=1e-18  Score=153.19  Aligned_cols=101  Identities=20%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCc-------------cC--CCCCCCcEE
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI-------------TV--KFDPQKDTY  251 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~-------------~~--~~~~~~~iv  251 (296)
                      .++++++.+.+.+    ++.++||||++.||..||||||+|+|+..+.......             ..  .++++++||
T Consensus        10 ~is~~~l~~~l~~----~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vv   85 (271)
T 1e0c_A           10 VIEPADLQARLSA----PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYV   85 (271)
T ss_dssp             EECHHHHHTTTTC----TTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEE
T ss_pred             eeeHHHHHHhccC----CCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            5788888888864    3679999999999999999999999999876531110             11  257899999


Q ss_pred             EEeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          252 VMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |||.+|. +|..+++.|+.+||+||++|+||+.+|..+..|
T Consensus        86 vyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p  126 (271)
T 1e0c_A           86 VYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP  126 (271)
T ss_dssp             EECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCC
T ss_pred             EEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCC
Confidence            9999998 999999999999999999999999999876554

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=99.75  E-value=1.5e-18  Score=150.82  Aligned_cols=108  Identities=27%  Similarity=0.502  Sum_probs=91.5

Q ss_pred             CCceEEEeeEeeccchHHHHHHHHHHHhc-CC----ccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCC
Q 022496           86 GDREILVQHLLVKEDDLNLLSELQRRVSQ-GR----EDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPL  159 (296)
Q Consensus        86 ~~~~~~~~~Il~~~~~~~~a~~i~~~l~~-~g----~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~  159 (296)
                      .+++++++||+++.++  .|++++++|+. .|    .+|+++|++||.|+ ++.+||++||++.++++|+|.++++.|++
T Consensus       109 ~~~~~~~~~I~~~~~~--~A~~~~~~l~~~~g~~~~~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l~~~f~~a~~~l~~  186 (252)
T 3rfw_A          109 KPARVQAKHILVATEK--EAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKN  186 (252)
T ss_dssp             ECCEEEEEEEEESSHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCTTTGGGTTEEEEECSSSSCHHHHHHHHHSCT
T ss_pred             ccceEEEEEEEeCCHH--HHHHHHHHHHhhcCCCccccHHHHHHHhCCCCchhhcCCcccccccccccHHHHHHHHcCCC
Confidence            3479999999999654  49999999952 34    59999999999998 45669999999999999999999999999


Q ss_pred             Ccee--ceeecCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496          160 NKVA--RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ  198 (296)
Q Consensus       160 G~vs--pv~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~  198 (296)
                      |++|  |++|++||||+++.++++.   ...+.++++..+.
T Consensus       187 G~is~~pv~t~~G~hii~v~~~~~~---~~~~~e~vk~~I~  224 (252)
T 3rfw_A          187 GTITTTPVKTNFGYHVILKENSQAK---GQIKFDEVKQGIE  224 (252)
T ss_dssp             TEECSSCEEETTEEEEEEEEEEECC---EECCHHHHHHHHH
T ss_pred             CCccCceEEECCEEEEEEEEEecCC---CCCCHHHHHHHHH
Confidence            9999  6999999999999998765   3355666665554

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.75  E-value=3.5e-18  Score=150.59  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=84.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecC----------ChHHHHhhCCCCceecccccccCCCCC-------------ccC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVR----------EPEEVALSSLPGFQVLPLRQFGSWGPD-------------ITV  242 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR----------~~~ey~~ghIpgA~~ip~~~l~~~~~~-------------~~~  242 (296)
                      ..++.+++.+.+.+    ++.++||+|          ++.||..||||||+|+|+..+......             ...
T Consensus         4 ~~is~~~l~~~l~~----~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~   79 (280)
T 1urh_A            4 WFVGADWLAEHIDD----PEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMR   79 (280)
T ss_dssp             CEECHHHHHTTTTC----TTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHH
T ss_pred             ceeeHHHHHHhcCC----CCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHH
Confidence            34788888888865    378999999          778999999999999999887543211             011


Q ss_pred             --CCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          243 --KFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       243 --~~~~~~~iv~~C~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                        .++++++|||||.+|.| |..+++.|+.+||+||++|+||+.+|..+..|
T Consensus        80 ~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p  131 (280)
T 1urh_A           80 ELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLL  131 (280)
T ss_dssp             HTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCC
T ss_pred             HcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCc
Confidence              25789999999999998 99999999999999999999999999876544

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.5e-18  Score=154.07  Aligned_cols=106  Identities=20%  Similarity=0.296  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCCcc--------------
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT--------------  241 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~~~--------------  241 (296)
                      .++.+++.+.+.+....++..+||+|++.+|.           .||||||+|+|+.++.+..+.+.              
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~  264 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKA  264 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHH
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHH
Confidence            36677888888765333457899999999996           49999999999998875432211              


Q ss_pred             -----CCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          242 -----VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       242 -----~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                           ..++++++||+||++|.+|+..+..|..+||+||++|+|+|.+|....+|.
T Consensus       265 ~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~pe  320 (327)
T 3utn_X          265 LKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGPE  320 (327)
T ss_dssp             HHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCGG
T ss_pred             HHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCCc
Confidence                 246789999999999999999999999999999999999999999877764

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.75  E-value=3.2e-18  Score=146.65  Aligned_cols=92  Identities=30%  Similarity=0.433  Sum_probs=78.9

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHh----------hCCCCceecccccccCCCCCccC--CCCCCCcEEEEe
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGPDITV--KFDPQKDTYVMC  254 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~----------ghIpgA~~ip~~~l~~~~~~~~~--~~~~~~~iv~~C  254 (296)
                      .++.+++.+         +..+||+|++.||..          ||||||+|+|+.++.... ++..  .++++++||+||
T Consensus       122 ~i~~~e~~~---------~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-e~~~~~~~~~~~~iv~~C  191 (230)
T 2eg4_A          122 LLTADEAAR---------HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-GLLERLGLQPGQEVGVYC  191 (230)
T ss_dssp             BCCHHHHHT---------CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-THHHHHTCCTTCEEEEEC
T ss_pred             eeCHHHHhh---------CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-HHHHhcCCCCCCCEEEEc
Confidence            467777654         357999999999999          999999999999986542 1222  468899999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496          255 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       255 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  289 (296)
                      ++|.||..++..|+.+| .||++|+|||.+|..+.
T Consensus       192 ~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g  225 (230)
T 2eg4_A          192 HSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEG  225 (230)
T ss_dssp             SSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcC
Confidence            99999999999999999 89999999999999873

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.74  E-value=5e-19  Score=139.91  Aligned_cols=103  Identities=22%  Similarity=0.214  Sum_probs=73.9

Q ss_pred             CCHHHHHHHhcCC---CC-CCCcEEEecCChHHHHhhCCCCceecccccccCC--C--CCcc--C------CCC-----C
Q 022496          188 IQPDELHKKMQDP---NF-HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW--G--PDIT--V------KFD-----P  246 (296)
Q Consensus       188 is~~ev~~~L~~~---~~-~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~--~--~~~~--~------~~~-----~  246 (296)
                      ++++++.+.+...   .+ +++..+||||++.||..||||||+|+|+..+...  .  ....  .      ...     +
T Consensus         3 Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (142)
T 2ouc_A            3 IYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIF   82 (142)
T ss_dssp             ECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHHH
T ss_pred             cCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhccC
Confidence            5677777733321   01 1367899999999999999999999999875321  0  1110  0      000     2


Q ss_pred             CCcEEEEeCCChhH---------HHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          247 QKDTYVMCHHGMRS---------LQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       247 ~~~iv~~C~~G~rs---------~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +++||+||.+|.+|         ..++..|...|| +|++|+|||.+|.....+
T Consensus        83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~  135 (142)
T 2ouc_A           83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHEN  135 (142)
T ss_dssp             HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGG
T ss_pred             CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHH
Confidence            78999999999885         567888999999 999999999999876543

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.74  E-value=3.2e-18  Score=161.72  Aligned_cols=98  Identities=29%  Similarity=0.433  Sum_probs=87.3

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+.+.+    ++..+||+|++.||..||||||+|+|+..+...    ...++++++||+||.+|.||..++.
T Consensus       374 ~~i~~~~l~~~~~~----~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~vvv~C~~G~ra~~a~~  445 (474)
T 3tp9_A          374 ANVSPDEVRGALAQ----QGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAH----IHDVPRDGSVCVYCRTGGRSAIAAS  445 (474)
T ss_dssp             EEECHHHHHHTTTT----TCCEEEECSCHHHHHHCBCTTCEECCHHHHTTT----GGGSCSSSCEEEECSSSHHHHHHHH
T ss_pred             cccCHHHHHHHhcC----CCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH----HhcCCCCCEEEEECCCCHHHHHHHH
Confidence            45788888888865    378999999999999999999999999998764    3456899999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|+.+||+||++|+|||.+|..+..|
T Consensus       446 ~L~~~G~~~v~~~~Gg~~~W~~~g~p  471 (474)
T 3tp9_A          446 LLRAHGVGDVRNMVGGYEAWRGKGFP  471 (474)
T ss_dssp             HHHHHTCSSEEEETTHHHHHHHTTCC
T ss_pred             HHHHcCCCCEEEecChHHHHHhCCCC
Confidence            99999999999999999999987433

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.74  E-value=5.2e-18  Score=149.19  Aligned_cols=94  Identities=27%  Similarity=0.367  Sum_probs=78.7

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHh----------------hCCCCceecccccccCCCCCc---------cC
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------------SSLPGFQVLPLRQFGSWGPDI---------TV  242 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~----------------ghIpgA~~ip~~~l~~~~~~~---------~~  242 (296)
                      ++.+++.+.+.+.    +  +||||++.||..                ||||||+|||+..+....+.+         ..
T Consensus       146 ~~~~el~~~~~~~----~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~  219 (277)
T 3aay_A          146 AFRDEVLAAINVK----N--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYA  219 (277)
T ss_dssp             ECHHHHHHTTTTS----E--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHH
T ss_pred             cCHHHHHHhcCCC----C--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHH
Confidence            5678888877653    3  999999999986                999999999998764422211         11


Q ss_pred             --CCCCCCcEEEEeCCChhHHHHHHHHHH-cCCCceEEccchHHHhhh
Q 022496          243 --KFDPQKDTYVMCHHGMRSLQVAQWLQT-QGFRRVFNVSGGIHAYAT  287 (296)
Q Consensus       243 --~~~~~~~iv~~C~~G~rs~~aa~~L~~-~G~~~v~~l~GG~~~W~~  287 (296)
                        .++++++||+||.+|.||..++..|++ +||+||++|+|||.+|..
T Consensus       220 ~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~  267 (277)
T 3aay_A          220 DAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGS  267 (277)
T ss_dssp             HHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTT
T ss_pred             HcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhc
Confidence              367899999999999999999999996 999999999999999987

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.74  E-value=1.2e-18  Score=156.27  Aligned_cols=102  Identities=10%  Similarity=0.097  Sum_probs=82.8

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHH-HHhhCCCCceeccccc-ccCCC----------CCccC--CCCCCCcEE
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEE-VALSSLPGFQVLPLRQ-FGSWG----------PDITV--KFDPQKDTY  251 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~e-y~~ghIpgA~~ip~~~-l~~~~----------~~~~~--~~~~~~~iv  251 (296)
                      ..++.+++.+.+.+    ++.++||||++.| |..||||||+|+|+.. +....          .....  .++++++||
T Consensus        40 ~~is~~~l~~~l~~----~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vV  115 (318)
T 3hzu_A           40 RLVTADWLSAHMGA----PGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVV  115 (318)
T ss_dssp             GEECHHHHHHHTTC----TTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEE
T ss_pred             ceecHHHHHHhccC----CCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            34888999998875    3689999999876 9999999999999753 21100          00011  267899999


Q ss_pred             EEeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          252 VMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |||.+|. +|..+++.|+.+||+||++|+||+.+|..+..|
T Consensus       116 vyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p  156 (318)
T 3hzu_A          116 IYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRE  156 (318)
T ss_dssp             EECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCC
T ss_pred             EECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCC
Confidence            9999887 999999999999999999999999999987654

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.74  E-value=3.9e-18  Score=150.61  Aligned_cols=98  Identities=21%  Similarity=0.311  Sum_probs=81.6

Q ss_pred             cCCCHHHHHHHhc---CCCCCCCcEEEecCChHHHH----------------hhCCCCceecccccccCCCCC-------
Q 022496          186 QDIQPDELHKKMQ---DPNFHKEAQLIDVREPEEVA----------------LSSLPGFQVLPLRQFGSWGPD-------  239 (296)
Q Consensus       186 ~~is~~ev~~~L~---~~~~~~~~~llDvR~~~ey~----------------~ghIpgA~~ip~~~l~~~~~~-------  239 (296)
                      ..++.+++.+.+.   ..    +..+||||++.||.                .||||||+|+|+..+.+..+.       
T Consensus       146 ~~i~~~el~~~l~~~~~~----~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l  221 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEG----KGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEEL  221 (285)
T ss_dssp             GEECHHHHHHHHHHHHTT----SEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHH
T ss_pred             eEEcHHHHHHHHhhcccC----CCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHH
Confidence            4588889988884   12    33699999999998                799999999999987643211       


Q ss_pred             --ccC--CCCCCCcEEEEeCCChhHHHHHHHHH-HcCCCceEEccchHHHhhh
Q 022496          240 --ITV--KFDPQKDTYVMCHHGMRSLQVAQWLQ-TQGFRRVFNVSGGIHAYAT  287 (296)
Q Consensus       240 --~~~--~~~~~~~iv~~C~~G~rs~~aa~~L~-~~G~~~v~~l~GG~~~W~~  287 (296)
                        ...  +++++++|||||.+|.||..++..|+ .+||+||++|+|||.+|.+
T Consensus       222 ~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~  274 (285)
T 1uar_A          222 RALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGN  274 (285)
T ss_dssp             HHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTT
T ss_pred             HHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhc
Confidence              112  26889999999999999999999999 9999999999999999984

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=135.31  Aligned_cols=104  Identities=19%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             hcCCCHHHHHHHhcCCCC----CCCcEEEecCChHHHHhhCCCCceeccccccc-----C--CCC--------CccCCC-
Q 022496          185 LQDIQPDELHKKMQDPNF----HKEAQLIDVREPEEVALSSLPGFQVLPLRQFG-----S--WGP--------DITVKF-  244 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~----~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~-----~--~~~--------~~~~~~-  244 (296)
                      ...++++++.+.+.....    .++..+||||++.||..||||||+|+|+..+.     .  ...        .....+ 
T Consensus        10 ~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (158)
T 3tg1_B           10 IKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFK   89 (158)
T ss_dssp             -CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHHHTCCCCSSCSST
T ss_pred             CcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHhhcCCHHHHHHHh
Confidence            356889999998873100    13678999999999999999999999999863     1  110        000111 


Q ss_pred             -CCCCcEEEEeCCC---------hhHHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496          245 -DPQKDTYVMCHHG---------MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       245 -~~~~~iv~~C~~G---------~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  289 (296)
                       .++++|||||.+|         .+|..++..|...|| +|++|+|||.+|....
T Consensus        90 ~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~~  143 (158)
T 3tg1_B           90 RIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNH  143 (158)
T ss_dssp             TTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSSC
T ss_pred             ccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHh
Confidence             2588999999999         469999999999999 7999999999998653

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.73  E-value=1e-19  Score=148.47  Aligned_cols=106  Identities=16%  Similarity=0.230  Sum_probs=81.4

Q ss_pred             hcCCCHHHHHHHhcCCC---CCCCcEEEecCChHHHHhhCCCCceecccccccCC---CCCccCCC-------CCCCcEE
Q 022496          185 LQDIQPDELHKKMQDPN---FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW---GPDITVKF-------DPQKDTY  251 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~---~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~---~~~~~~~~-------~~~~~iv  251 (296)
                      ...++++++.+++.++.   ..++.+|||||+ .||..||||||+|||+..|...   ...+...+       ..+++||
T Consensus        30 ~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~IV  108 (169)
T 3f4a_A           30 VKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVI  108 (169)
T ss_dssp             EEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             CcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcccccHHHHHHHHHhhcccccCCCeEE
Confidence            35688999999987641   112588999999 8999999999999999987653   22222111       1147999


Q ss_pred             EEeCCC-hhHHHHHHHHHH----cC--CCceEEccchHHHhhhccCC
Q 022496          252 VMCHHG-MRSLQVAQWLQT----QG--FRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~~G-~rs~~aa~~L~~----~G--~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |||.+| .||..++.+|..    .|  |.+|++|+|||.+|..+..+
T Consensus       109 vyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~  155 (169)
T 3f4a_A          109 FHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGD  155 (169)
T ss_dssp             EECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTT
T ss_pred             EEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCC
Confidence            999987 899999887765    36  67999999999999987664

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.72  E-value=1.9e-17  Score=147.02  Aligned_cols=106  Identities=13%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecC--------ChHHHHhhCCCCceecccccccCCCCC---cc------------C
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVR--------EPEEVALSSLPGFQVLPLRQFGSWGPD---IT------------V  242 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR--------~~~ey~~ghIpgA~~ip~~~l~~~~~~---~~------------~  242 (296)
                      ..++.+++.+++.++...++.++||||        ++.||..||||||+|+|+..|......   .+            .
T Consensus         8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~l   87 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSL   87 (296)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHT
T ss_pred             ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence            357888998888752111367899999        579999999999999999977653211   11            0


Q ss_pred             CCCCCCcEEEEeCC--Chh-HHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          243 KFDPQKDTYVMCHH--GMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       243 ~~~~~~~iv~~C~~--G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .++++++|||||.+  |.+ |..+++.|+.+||+||++|+||+.+|..+..|
T Consensus        88 gi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p  139 (296)
T 1rhs_A           88 GISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHP  139 (296)
T ss_dssp             TCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCC
T ss_pred             CCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCc
Confidence            25789999999998  876 78999999999999999999999999977654

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.72  E-value=2.2e-18  Score=152.25  Aligned_cols=102  Identities=11%  Similarity=0.139  Sum_probs=82.4

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecC-ChHHHHhhCCCCceecccccccCC-C----------CCccC--CCCCCCcEE
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVR-EPEEVALSSLPGFQVLPLRQFGSW-G----------PDITV--KFDPQKDTY  251 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR-~~~ey~~ghIpgA~~ip~~~l~~~-~----------~~~~~--~~~~~~~iv  251 (296)
                      ..++.+++.+.+.+    ++.++|||| ++.||..||||||+|+|+..+... .          .....  .++++++||
T Consensus         8 ~~is~~~l~~~l~~----~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~iv   83 (285)
T 1uar_A            8 VLVSTDWVQEHLED----PKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVV   83 (285)
T ss_dssp             GEECHHHHHTTTTC----TTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEE
T ss_pred             ceEcHHHHHHhcCC----CCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            35888898888865    368899999 789999999999999998742110 0          00111  257899999


Q ss_pred             EEeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          252 VMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |||.+|. +|..+++.|+.+||+||++|+||+.+|..+..|
T Consensus        84 vyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p  124 (285)
T 1uar_A           84 LYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRP  124 (285)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCC
T ss_pred             EECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCc
Confidence            9999998 799999999999999999999999999876544

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.72  E-value=5.2e-18  Score=136.24  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=74.9

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceeccccccc------C--CCCCcc---------CCCCCCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG------S--WGPDIT---------VKFDPQK  248 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~------~--~~~~~~---------~~~~~~~  248 (296)
                      ..++.+++.+.+.++  .++..+||||++.||..||||||+|||+..+.      .  ....++         ..+++++
T Consensus        16 ~~is~~~l~~~l~~~--~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   93 (154)
T 1hzm_A           16 ISKTVAWLNEQLELG--NERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTD   93 (154)
T ss_dssp             SBSCCCCHHHHHHHC--SSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSS
T ss_pred             cccCHHHHHHHHhCC--CCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHHHHHHHhccCCCC
Confidence            446777777777642  12678999999999999999999999998753      1  000111         1246789


Q ss_pred             cEEEEeCCChhH-------HHHHHHHHHc---CCCceEEccchHHHhhhc
Q 022496          249 DTYVMCHHGMRS-------LQVAQWLQTQ---GFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       249 ~iv~~C~~G~rs-------~~aa~~L~~~---G~~~v~~l~GG~~~W~~~  288 (296)
                      +|||||.+|.++       ..+++.|+.+   ||+ |++|+|||.+|...
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            999999999875       3446667655   998 99999999999875

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.71  E-value=3.9e-18  Score=150.02  Aligned_cols=102  Identities=11%  Similarity=0.100  Sum_probs=82.1

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCC-hHHHHhhCCCCceecccccccCCC-----------CCccC--CCCCCCcEE
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVRE-PEEVALSSLPGFQVLPLRQFGSWG-----------PDITV--KFDPQKDTY  251 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~-~~ey~~ghIpgA~~ip~~~l~~~~-----------~~~~~--~~~~~~~iv  251 (296)
                      ..++.+++.+.+.+    ++.++||||+ +.||..||||||+|+|+..+....           .....  .++++++||
T Consensus         6 ~~is~~~l~~~l~~----~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vv   81 (277)
T 3aay_A            6 VLVSADWAESNLHA----PKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVI   81 (277)
T ss_dssp             HEECHHHHHTTTTC----TTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEE
T ss_pred             ceEcHHHHHHHhCC----CCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            34788888888865    3678999998 899999999999999987542210           00011  267899999


Q ss_pred             EEeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          252 VMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      |||.+|. +|..+++.|+.+||+||++|+||+.+|..+..|
T Consensus        82 vyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p  122 (277)
T 3aay_A           82 LYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRP  122 (277)
T ss_dssp             EECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCC
T ss_pred             EECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCc
Confidence            9999875 789999999999999999999999999877554

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.71  E-value=7.1e-18  Score=161.66  Aligned_cols=102  Identities=18%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+.+.++   ++..+||||++.||..||||||+|||+..|......+.  .+++++|||||.+|.+|..+++
T Consensus         7 ~~is~~~l~~~l~~~---~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~~~~l~--~~~~~~iVvyc~~g~~s~~a~~   81 (539)
T 1yt8_A            7 AVRTFHDIRAALLAR---RELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARV--PRRDTPITVYDDGEGLAPVAAQ   81 (539)
T ss_dssp             EEECHHHHHHHHHHT---CCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHS--CCTTSCEEEECSSSSHHHHHHH
T ss_pred             cccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCcCCCCEECCHHHHHHHHHhhC--CCCCCeEEEEECCCChHHHHHH
Confidence            458889999888753   36899999999999999999999999998876433222  2578999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      .|+.+||+||++|+||+.+|..+..|.
T Consensus        82 ~L~~~G~~~V~~L~GG~~~W~~~g~p~  108 (539)
T 1yt8_A           82 RLHDLGYSDVALLDGGLSGWRNAGGEL  108 (539)
T ss_dssp             HHHHTTCSSEEEETTHHHHHHHTTCCC
T ss_pred             HHHHcCCCceEEeCCCHHHHHhcCCCc
Confidence            999999999999999999999876653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.71  E-value=8.9e-18  Score=162.61  Aligned_cols=98  Identities=31%  Similarity=0.544  Sum_probs=86.2

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  264 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa  264 (296)
                      ...++.+++.+++.+     +..+||||++.||..||||||+|||+..|...    ...++++++||+||.+|.||..++
T Consensus       488 ~~~i~~~~~~~~~~~-----~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~----~~~l~~~~~iv~~C~~g~rs~~a~  558 (588)
T 3ics_A          488 VDTVQWHEIDRIVEN-----GGYLIDVREPNELKQGMIKGSINIPLDELRDR----LEEVPVDKDIYITCQLGMRGYVAA  558 (588)
T ss_dssp             CCEECTTTHHHHHHT-----TCEEEECSCGGGGGGCBCTTEEECCHHHHTTC----GGGSCSSSCEEEECSSSHHHHHHH
T ss_pred             cceecHHHHHHHhcC-----CCEEEEcCCHHHHhcCCCCCCEECCHHHHHHH----HhhCCCCCeEEEECCCCcHHHHHH
Confidence            456788888888853     57899999999999999999999999998764    344689999999999999999999


Q ss_pred             HHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          265 QWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       265 ~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      +.|+++||+ |++|+|||.+|..+.++.
T Consensus       559 ~~l~~~G~~-v~~l~GG~~~w~~~~~~~  585 (588)
T 3ics_A          559 RMLMEKGYK-VKNVDGGFKLYGTVLPER  585 (588)
T ss_dssp             HHHHHTTCC-EEEETTHHHHHHHHCGGG
T ss_pred             HHHHHcCCc-EEEEcchHHHHHhhhhhh
Confidence            999999998 999999999999876543

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=99.70  E-value=8.8e-18  Score=151.14  Aligned_cols=93  Identities=17%  Similarity=0.241  Sum_probs=84.4

Q ss_pred             ceEEEeeEee-cc--------chHHHHHHHHHH-HhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCc---HHHHHH
Q 022496           88 REILVQHLLV-KE--------DDLNLLSELQRR-VSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLV---PEFEEV  153 (296)
Q Consensus        88 ~~~~~~~Il~-~~--------~~~~~a~~i~~~-l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~---~~~~~~  153 (296)
                      .+++++||++ +.        .++++|++++++ ++ +|.+|+++|++||+|+ ++.+||+|||++.++++   |+|.++
T Consensus       158 ~~~~~~~Ili~~~~~~~~~~~~~~~~a~~i~~~~l~-~g~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~~~~a  236 (325)
T 3nrk_A          158 FEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILA-DPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATI  236 (325)
T ss_dssp             EEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHSTTSCHHHHHTTTEEEEEEHHHHHHHCHHHHHH
T ss_pred             cceEEEEEEEecCCCCccchHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCccccccCCcccccccccccccCHHHHHH
Confidence            6789999999 32        357789999999 85 8999999999999998 66999999999999999   999999


Q ss_pred             HhcCCCCcee-ceeecC-cceEEEeehhhh
Q 022496          154 AFTTPLNKVA-RCKTKF-GWHLLQVLSERE  181 (296)
Q Consensus       154 ~~~l~~G~vs-pv~~~~-G~~Ii~v~~~~~  181 (296)
                      +|+|++|++| ||++++ ||||+++.++++
T Consensus       237 ~~~l~~Geis~pv~t~~~G~hIikv~~~~~  266 (325)
T 3nrk_A          237 AAPLPNGGVSEVFRDERKRYCILKIEGKRP  266 (325)
T ss_dssp             HTTCCTTCBCCCEECTTSCEEEEEEEEEEE
T ss_pred             HHcCCCCCCCceEEeCCCeEEEEEEeccCC
Confidence            9999999999 799999 999999998753

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=142.64  Aligned_cols=106  Identities=13%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecC---------ChHHHHhhCCCCceecccccccCCCCCcc-------------C-
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGPDIT-------------V-  242 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR---------~~~ey~~ghIpgA~~ip~~~l~~~~~~~~-------------~-  242 (296)
                      ..++++++.+.+.+....++.++||||         ++.||..||||||+|||+..+.+....+.             . 
T Consensus        22 ~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~  101 (302)
T 3olh_A           22 SMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGR  101 (302)
T ss_dssp             CEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHHHH
T ss_pred             CccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHHHH
Confidence            347888999988763112368999999         78899999999999999987643211110             1 


Q ss_pred             -CCCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          243 -KFDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       243 -~~~~~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                       .++++++|||||.+   +.+|..+++.|+.+||++|++|+||+.+|..+..|
T Consensus       102 lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p  154 (302)
T 3olh_A          102 LGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLP  154 (302)
T ss_dssp             TTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC
T ss_pred             cCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCC
Confidence             24789999999963   45799999999999999999999999999987554

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.68  E-value=3.6e-17  Score=149.68  Aligned_cols=85  Identities=15%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             CCcEEEecCChHHHH-----------hhCCCCceeccccccc--CCCCC-------c---cC----CCCC---CCcEEEE
Q 022496          204 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFG--SWGPD-------I---TV----KFDP---QKDTYVM  253 (296)
Q Consensus       204 ~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~--~~~~~-------~---~~----~~~~---~~~iv~~  253 (296)
                      .+..+||+|++.||.           .||||||+|||+.++.  ...+.       +   +.    .+++   +++||+|
T Consensus       173 ~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivvy  252 (373)
T 1okg_A          173 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVFS  252 (373)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEEE
T ss_pred             cCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEEE
Confidence            467899999999999           9999999999999886  32111       1   11    3477   9999999


Q ss_pred             eCCChhHHHHHHHHHHcCCCceEEccchHHHhhhc
Q 022496          254 CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       254 C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      |++|.||..++..|+.+||+||++|+|||.+|...
T Consensus       253 C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~  287 (373)
T 1okg_A          253 CGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGL  287 (373)
T ss_dssp             CSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcC
Confidence            99999999999999999999999999999999863

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.68  E-value=5.8e-17  Score=150.91  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             CCCHHHHHHHhcCCCC----CCCcEEEecC--ChHHHHhhCCCCceecccccccCCCCC-c---------c--CCCCCCC
Q 022496          187 DIQPDELHKKMQDPNF----HKEAQLIDVR--EPEEVALSSLPGFQVLPLRQFGSWGPD-I---------T--VKFDPQK  248 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~----~~~~~llDvR--~~~ey~~ghIpgA~~ip~~~l~~~~~~-~---------~--~~~~~~~  248 (296)
                      .++.+++.+.+.....    ..+..+||+|  ++.||..||||||+|+|+..+...... +         +  ..+++++
T Consensus       125 ~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~  204 (423)
T 2wlr_A          125 LVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDT  204 (423)
T ss_dssp             EECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTS
T ss_pred             ccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence            3566777777664211    1367899999  999999999999999999987542111 1         1  2457899


Q ss_pred             cEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496          249 DTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       249 ~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  289 (296)
                      +||+||.+|.||..++..|+.+||+||++|+|||.+|....
T Consensus       205 ~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g  245 (423)
T 2wlr_A          205 TVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAG  245 (423)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTT
T ss_pred             eEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCC
Confidence            99999999999999999999999999999999999998654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.68  E-value=3.2e-17  Score=157.79  Aligned_cols=80  Identities=24%  Similarity=0.438  Sum_probs=73.6

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      ++..+||||++.||..||||||+|+|+.+|...    ...++++++||+||.+|.||..+++.|+++|| ||++|+|||.
T Consensus       485 ~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~----~~~~~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~  559 (565)
T 3ntd_A          485 EDQLLLDVRNPGELQNGGLEGAVNIPVDELRDR----MHELPKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYR  559 (565)
T ss_dssp             TTEEEEECSCGGGGGGCCCTTCEECCGGGTTTS----GGGSCTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred             CCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHH----HhhcCCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHH
Confidence            478899999999999999999999999998764    34468999999999999999999999999999 9999999999


Q ss_pred             Hhhhc
Q 022496          284 AYATK  288 (296)
Q Consensus       284 ~W~~~  288 (296)
                      +|..+
T Consensus       560 ~w~~~  564 (565)
T 3ntd_A          560 TYKFA  564 (565)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99864

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.68  E-value=2.8e-17  Score=153.01  Aligned_cols=98  Identities=16%  Similarity=0.284  Sum_probs=80.4

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHH-----------HhhCCCCceecccc-------cccCCCC------Cc-
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLR-------QFGSWGP------DI-  240 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey-----------~~ghIpgA~~ip~~-------~l~~~~~------~~-  240 (296)
                      ..++.+++.+.+.+    ++..+||||++.||           ..||||||+|+|+.       ++.+..+      ++ 
T Consensus       272 ~~i~~~e~~~~l~~----~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~  347 (423)
T 2wlr_A          272 LMLDMEQARGLLHR----QDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDIT  347 (423)
T ss_dssp             GEECHHHHHTTTTC----SSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHH
T ss_pred             heecHHHHHHHhcC----CCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHH
Confidence            34778888887765    36789999999999           78999999999986       2221111      11 


Q ss_pred             --c--CCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhh
Q 022496          241 --T--VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT  287 (296)
Q Consensus       241 --~--~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~  287 (296)
                        .  ..++++++||+||.+|.||..++..|+.+||+||++|+|||.+|..
T Consensus       348 ~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~  398 (423)
T 2wlr_A          348 AMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSS  398 (423)
T ss_dssp             HHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTT
T ss_pred             HHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhc
Confidence              1  2467899999999999999999999999999999999999999987

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.67  E-value=4e-17  Score=156.43  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=86.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..++.+++.+.+.++    +..+||||++.||..||||||+|+|...|....    ..++++++||+||.+|.||..++.
T Consensus       377 ~~i~~~~l~~~l~~~----~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~l----~~l~~~~~ivv~C~sG~rs~~aa~  448 (539)
T 1yt8_A          377 DTIDPTTLADWLGEP----GTRVLDFTASANYAKRHIPGAAWVLRSQLKQAL----ERLGTAERYVLTCGSSLLARFAVA  448 (539)
T ss_dssp             CEECHHHHHHHTTST----TEEEEECSCHHHHHHCBCTTCEECCGGGHHHHH----HHHCCCSEEEEECSSSHHHHHHHH
T ss_pred             CccCHHHHHHHhcCC----CeEEEEeCCHHHhhcCcCCCchhCCHHHHHHHH----HhCCCCCeEEEEeCCChHHHHHHH
Confidence            457888998888763    678999999999999999999999999886642    335889999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|+.+||++|++|+|||.+|.....|
T Consensus       449 ~L~~~G~~~v~~l~GG~~~W~~~g~p  474 (539)
T 1yt8_A          449 EVQALSGKPVFLLDGGTSAWVAAGLP  474 (539)
T ss_dssp             HHHHHHCSCEEEETTHHHHHHHTTCC
T ss_pred             HHHHcCCCCEEEeCCcHHHHHhCCCC
Confidence            99999999999999999999976544

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.66  E-value=1e-16  Score=146.69  Aligned_cols=99  Identities=11%  Similarity=0.124  Sum_probs=79.9

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCC--------hHHHHhhCCCCceeccccc-ccCC------CCCcc---------
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVRE--------PEEVALSSLPGFQVLPLRQ-FGSW------GPDIT---------  241 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~--------~~ey~~ghIpgA~~ip~~~-l~~~------~~~~~---------  241 (296)
                      ..++.+++.+.+.+      .++||||+        +.||..||||||+|+|+.. |...      ...+.         
T Consensus        14 ~~Is~~el~~~l~~------~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l   87 (373)
T 1okg_A           14 VFLDPSEVADHLAE------YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWC   87 (373)
T ss_dssp             CEECHHHHTTCGGG------SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHH
T ss_pred             cEEcHHHHHHHcCC------cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHH
Confidence            45778888776642      78999998        6899999999999999986 6542      00110         


Q ss_pred             --CCCCCCCcEEEEe-CCChhHH-HHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          242 --VKFDPQKDTYVMC-HHGMRSL-QVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       242 --~~~~~~~~iv~~C-~~G~rs~-~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                        ..++++++||||| .+|.||. .+++.|+.+|| ||++|+||+.+|..+..|
T Consensus        88 ~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~p  140 (373)
T 1okg_A           88 MANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLE  140 (373)
T ss_dssp             HHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCC
T ss_pred             HHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCC
Confidence              1357899999999 7888886 99999999999 999999999999977544

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.65  E-value=3.9e-17  Score=151.30  Aligned_cols=113  Identities=19%  Similarity=0.291  Sum_probs=92.4

Q ss_pred             ccCchhhc-ccccCCCCCCCCCCCceEEEeeEeeccc----------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCccc
Q 022496           65 SFTSPKAA-SFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKG  133 (296)
Q Consensus        65 ~~~~~e~~-~~~~~~~~i~~~~~~~~~~~~~Il~~~~----------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~  133 (296)
                      .+++.+.. .|..+.   .....+++++++||+++.+          +++.|++++++|+ +|.+|+++|++||+|+++.
T Consensus       131 ~vsd~ei~~~y~~~~---~~~~~~~~~~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~-~g~~F~~lA~~~S~~~~~~  206 (408)
T 1m5y_A          131 TILPQEVESLAQQVG---NQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQAR-NGADFGKLAIAHSADQQAL  206 (408)
T ss_dssp             CCCTTHHHHHHHCC----------CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHCCSTTGG
T ss_pred             CCCHHHHHHHHHhhh---hhcCCcccEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHcCCCcccc
Confidence            34455443 444443   2334557899999999743          3678999999996 8999999999999999999


Q ss_pred             CCcccccccCCCCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhh
Q 022496          134 EGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE  181 (296)
Q Consensus       134 ~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~  181 (296)
                      +||+|||++.+.++|+|.++++.|++|++| ||++++||||+++.+.++
T Consensus       207 ~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~~~~  255 (408)
T 1m5y_A          207 NGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRG  255 (408)
T ss_dssp             GTTEEEEECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred             cCCcccccchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEEecC
Confidence            999999999999999999999999999999 799999999999998665

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.65  E-value=1e-17  Score=157.79  Aligned_cols=80  Identities=24%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      ++..+||||++.||..||||||+|+|+.++.+..    ..++++++||+||.+|.||..++..|+.+||+||++|+|||.
T Consensus       386 ~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~----~~l~~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~  461 (466)
T 3r2u_A          386 NESHILDVRNDNEWNNGHLSQAVHVPHGKLLETD----LPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK  461 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHHH----hhCCCCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence            3678999999999999999999999999987643    346889999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 022496          284 AYAT  287 (296)
Q Consensus       284 ~W~~  287 (296)
                      +|..
T Consensus       462 ~W~~  465 (466)
T 3r2u_A          462 DIQL  465 (466)
T ss_dssp             ----
T ss_pred             HHhh
Confidence            9975

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.62  E-value=2e-16  Score=135.43  Aligned_cols=80  Identities=19%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccc--cccCC-----------CCCccCCCCCCCcEEEEeCCCh-hHHHHHHHHHH
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLR--QFGSW-----------GPDITVKFDPQKDTYVMCHHGM-RSLQVAQWLQT  269 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~--~l~~~-----------~~~~~~~~~~~~~iv~~C~~G~-rs~~aa~~L~~  269 (296)
                      ++.++||+|++.||..||||||+|+|+.  ++...           .......++.+++|||||.+|. +|..+++.|+ 
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-   83 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-   83 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-
Confidence            5789999999999999999999999998  44210           0111122345899999999998 9999999999 


Q ss_pred             cCCCceEEccchHHHhhh
Q 022496          270 QGFRRVFNVSGGIHAYAT  287 (296)
Q Consensus       270 ~G~~~v~~l~GG~~~W~~  287 (296)
                      +||+||++|+||   |..
T Consensus        84 ~G~~~v~~l~GG---W~~   98 (230)
T 2eg4_A           84 LGGLEVQLWTEG---WEP   98 (230)
T ss_dssp             HTTCCEEEECSS---CGG
T ss_pred             cCCceEEEeCCC---Ccc
Confidence            999999999999   765

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.60  E-value=6.2e-16  Score=124.63  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=71.2

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC--CccCCCC-----------CCCcEEE
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP--DITVKFD-----------PQKDTYV  252 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~--~~~~~~~-----------~~~~iv~  252 (296)
                      ..++++++.+++.+..  ++..+||||++.||..||||||+|||+..+.....  .+...++           ..+.||+
T Consensus        15 ~~i~~~~l~~~l~~~~--~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~~~VVv   92 (157)
T 1whb_A           15 GAITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   92 (157)
T ss_dssp             SEECHHHHHHHHTCSS--SCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCCTTHHHHHHGGGTSSEEEE
T ss_pred             CccCHHHHHHHHhcCC--CCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCChHHHHHHHhcCCCCEEEE
Confidence            4588899998887531  26789999999999999999999999887643210  0111111           2345999


Q ss_pred             EeCCChh----HHHHHHHHHH----c----CCCc-eEEccchHHHhhhc
Q 022496          253 MCHHGMR----SLQVAQWLQT----Q----GFRR-VFNVSGGIHAYATK  288 (296)
Q Consensus       253 ~C~~G~r----s~~aa~~L~~----~----G~~~-v~~l~GG~~~W~~~  288 (296)
                      ||.+|.+    +..+++.|.+    .    ||.+ |++|+||+.+|...
T Consensus        93 y~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~  141 (157)
T 1whb_A           93 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  141 (157)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH
T ss_pred             ECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH
Confidence            9987754    3455666652    2    4554 99999999999974

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.60  E-value=5.7e-16  Score=124.79  Aligned_cols=101  Identities=15%  Similarity=0.095  Sum_probs=71.0

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC--CccCCC-----------CCCCcEEE
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP--DITVKF-----------DPQKDTYV  252 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~--~~~~~~-----------~~~~~iv~  252 (296)
                      ..++++++.+++.+..  ++..+||||++.||..||||||+|||+..+.....  .+...+           .+.+.||+
T Consensus        20 ~~is~~~l~~~l~~~~--~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp~~~~~l~~~~~~~~~VVv   97 (157)
T 2gwf_A           20 GAITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVL   97 (157)
T ss_dssp             CEECHHHHHHHHHSTT--SCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEE
T ss_pred             CccCHHHHHHHHhcCC--CCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcCHHHHHHHHhcCCCCEEEE
Confidence            5588999998887531  26799999999999999999999999987643210  011111           23345999


Q ss_pred             EeCCChh----HHHHHHHHH----Hc----CCCc-eEEccchHHHhhhc
Q 022496          253 MCHHGMR----SLQVAQWLQ----TQ----GFRR-VFNVSGGIHAYATK  288 (296)
Q Consensus       253 ~C~~G~r----s~~aa~~L~----~~----G~~~-v~~l~GG~~~W~~~  288 (296)
                      ||.+|.+    +..+++.|.    ..    ||.+ |++|+||+.+|...
T Consensus        98 y~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~  146 (157)
T 2gwf_A           98 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  146 (157)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             EcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH
Confidence            9987754    334455554    22    4554 99999999999974

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.45  E-value=3.4e-14  Score=134.09  Aligned_cols=96  Identities=17%  Similarity=0.297  Sum_probs=79.5

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceeccccc-ccCCCCCccCCCCCCCcEEEEeCCChhHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ-FGSWGPDITVKFDPQKDTYVMCHHGMRSLQV  263 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~-l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~a  263 (296)
                      ...++++++.+.+.+     . ++||+|++.+|..||||||+|+|+.. |..+.+.+   .+++++|||||..|. +..+
T Consensus       272 ~~~is~~~l~~~l~~-----~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~~~~~l---~~~~~~vvvy~~~~~-~~~~  341 (474)
T 3tp9_A          272 RVDLPPERVRAWREG-----G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGWL---LPADRPIHLLAADAI-APDV  341 (474)
T ss_dssp             ECCCCGGGHHHHHHT-----S-EEEECSCHHHHHHSEETTCEECCSSTTHHHHHHHH---CCSSSCEEEECCTTT-HHHH
T ss_pred             CceeCHHHHHHHhCC-----C-EEEECCChHHHhccCCCCeEEECcchHHHHHHHhc---CCCCCeEEEEECCCc-HHHH
Confidence            356888999998875     3 89999999999999999999999874 44443333   267899999999876 5669


Q ss_pred             HHHHHHcCCCceEEccchHHHhhhccC
Q 022496          264 AQWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       264 a~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      ++.|+.+||++|++|.+|+.+|..+..
T Consensus       342 ~~~L~~~G~~~v~~~l~G~~~W~~~g~  368 (474)
T 3tp9_A          342 IRALRSIGIDDVVDWTDPAAVDRAAPD  368 (474)
T ss_dssp             HHHHHHTTCCCEEEEECGGGGTTCCGG
T ss_pred             HHHHHHcCCcceEEecCcHHHHHhccc
Confidence            999999999999987779999987543

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}

Probab=99.38  E-value=3.8e-14  Score=122.87  Aligned_cols=107  Identities=12%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             cCchhh-cccccCCCCCCCCCCCceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCC
Q 022496           66 FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKG  144 (296)
Q Consensus        66 ~~~~e~-~~~~~~~~~i~~~~~~~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~  144 (296)
                      +++.|. +.|..++   .....+++++++||++..+      +++++|+ +|.+|+             -||++||++.+
T Consensus       114 vtd~ei~~yy~~~~---~~f~~~~~v~~~~i~~~~~------~~~~~l~-~g~~f~-------------l~g~lg~~~~~  170 (252)
T 3rgc_A          114 FSDDGAKKFFEQNK---DKFTFYTQINANIYLSNNP------QTLENIK-NTKKTI-------------LKPQNASLNTS  170 (252)
T ss_dssp             CCHHHHHHHHHTCG---GGCCEESEEEEEEEECSCH------HHHHHHH-HHCCCC-------------SCCEEEEEETT
T ss_pred             CCHHHHHHHHHhCH---HhcCCCceEEEEEecCCCH------HHHHHHH-hCCCcc-------------cccccceecHH
Confidence            355555 4555554   2344457899999998632      3567785 788886             27899999999


Q ss_pred             CCcHHHHHHHhcCCCCcee-ceeecCcceEEEeehhhhhhhhcCCCHHHHHHHhc
Q 022496          145 QLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ  198 (296)
Q Consensus       145 ~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~~~~~~~~~~is~~ev~~~L~  198 (296)
                      +++|+|.+++++|++|++| |+++++||||+++.++++.   ...+.++++..+.
T Consensus       171 ~l~~~~~~a~~~l~~G~is~pv~t~~G~hiikv~~~~~~---~~~~~eevk~~I~  222 (252)
T 3rgc_A          171 NADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGT---QTPEYEQVKNEVL  222 (252)
T ss_dssp             TSCHHHHHHHHHSCTTCBCCCBTTTTCEEEEEEEECSCE---ECCCHHHHHHHHH
T ss_pred             hcCHHHHHHHHcCCCCCcCCcEEeCCeEEEEEEecccCC---ccCChHHHHHHHH
Confidence            9999999999999999999 7999999999999998774   3355666655554

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.31  E-value=5.8e-12  Score=112.71  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecC--------Ch-HHH-HhhCCCCceecccccccCCCCCccC-------------
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVR--------EP-EEV-ALSSLPGFQVLPLRQFGSWGPDITV-------------  242 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR--------~~-~ey-~~ghIpgA~~ip~~~l~~~~~~~~~-------------  242 (296)
                      +-|++.++.+++..... ...++||++        +. .|| +.||||||++++++.+.+....+..             
T Consensus        28 ~LIsp~~l~~ll~~~~~-~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l~  106 (327)
T 3utn_X           28 DLISPKAFVKLVASEKV-HRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMS  106 (327)
T ss_dssp             EEECHHHHHHHHHHCSS-SCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHHH
T ss_pred             cccCHHHHHHHHhCCCC-CcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHHH
Confidence            35889999998875421 357889985        33 466 7899999999999877653322211             


Q ss_pred             --CCCCCCcEEEEeCCC-hhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          243 --KFDPQKDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       243 --~~~~~~~iv~~C~~G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                        ++.++++||+|+..| ..|+.+++.|+-.||+||++|+|| .+|..+..|
T Consensus       107 ~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p  157 (327)
T 3utn_X          107 NLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYP  157 (327)
T ss_dssp             HTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCC
T ss_pred             HcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCC
Confidence              467899999999866 568899999999999999999987 899987654

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.25  E-value=5.1e-12  Score=118.88  Aligned_cols=79  Identities=11%  Similarity=0.051  Sum_probs=63.6

Q ss_pred             CCcEEEecCChHHHHhhCCCCceecccc-cccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEE-ccch
Q 022496          204 KEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFN-VSGG  281 (296)
Q Consensus       204 ~~~~llDvR~~~ey~~ghIpgA~~ip~~-~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~-l~GG  281 (296)
                      ++.++||+|++.+|..||||||+|+|+. .|..+.+.+   ++++++||+||. +.++..+++.|+.+||++|+. ++|+
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~~~~~---~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~v~~~l~g~  370 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWY---LNYDQEINLIGD-YHLVSKATHTLQLIGYDDIAGYQLPQ  370 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHHHTTT---CCTTSCEEEESC-HHHHHHHHHHHHTTTCCCEEEEECCC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHHHHhc---cCCCCeEEEEEC-CchHHHHHHHhhhhhcccccccccCc
Confidence            5789999999999999999999999987 455544433   378999999999 668999999999999999987 6777


Q ss_pred             HHHhh
Q 022496          282 IHAYA  286 (296)
Q Consensus       282 ~~~W~  286 (296)
                      ...|.
T Consensus       371 ~~~~~  375 (466)
T 3r2u_A          371 SKIQT  375 (466)
T ss_dssp             -----
T ss_pred             ccccH
Confidence            65554

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=99.17  E-value=2e-12  Score=98.17  Aligned_cols=82  Identities=13%  Similarity=-0.050  Sum_probs=67.7

Q ss_pred             cccccCCchhhhh---------------ccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeeccccc
Q 022496            3 LRASQLASPVLCA---------------ITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSF   66 (296)
Q Consensus         3 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~   66 (296)
                      +||+||+-+....               .+......++++++.+..|...|+.+ ++|| |..++.+||+|||+..++|+
T Consensus         5 vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~S-d~~sa~~GGdLG~~~~~~~~   83 (115)
T 2lj4_A            5 LRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRS-DCGSYASGGDLGFFSSGEMM   83 (115)
T ss_dssp             EEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHC-CSGGGGTTSEEEEEETTSSC
T ss_pred             EEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcCchhHHHHHHHhC-CCcccccCCccceecCCCCC
Confidence            7999999765432               12233445667777777887799999 9999 66799999999999999999


Q ss_pred             CchhhcccccCCCCCCCCC
Q 022496           67 TSPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        67 ~~~e~~~~~~~~~~i~~~~   85 (296)
                      ++|+.++|.+++|+||+|.
T Consensus        84 ~~f~~a~~~l~~GeiS~pv  102 (115)
T 2lj4_A           84 KPFEDAVRALKIGDISPIV  102 (115)
T ss_dssp             HHHHHHHTTSCBTCBCCCE
T ss_pred             chHHHHHhcCCCCCCCCcE
Confidence            9999999999999999884

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=98.96  E-value=4.1e-11  Score=90.29  Aligned_cols=84  Identities=10%  Similarity=-0.143  Sum_probs=69.6

Q ss_pred             ccccccCCchhhhh-ccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCC
Q 022496            2 MLRASQLASPVLCA-ITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTE   79 (296)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~   79 (296)
                      .+|++||+-+.+.. ........+++++..+..|...|+.+ ++||+|+.++.+||+|||+..+.+.++|+.+.|.+++|
T Consensus         8 ~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G   87 (110)
T 4g2p_A            8 EVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKG   87 (110)
T ss_dssp             EEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCCTT
T ss_pred             EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCeecccccCHHHHHHHHcCCCC
Confidence            36899999776421 12234455677788777887799999 99999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 022496           80 GSSPGG   85 (296)
Q Consensus        80 ~i~~~~   85 (296)
                      +||.|.
T Consensus        88 eis~pv   93 (110)
T 4g2p_A           88 QISAPV   93 (110)
T ss_dssp             CBCCCE
T ss_pred             CcCccE
Confidence            999874

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=98.89  E-value=6.9e-11  Score=90.63  Aligned_cols=83  Identities=16%  Similarity=0.018  Sum_probs=66.2

Q ss_pred             ccccccCCchhhhh-------------ccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccC
Q 022496            2 MLRASQLASPVLCA-------------ITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFT   67 (296)
Q Consensus         2 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~   67 (296)
                      .+|++||+-+.+..             .+......+++++..+..|...|+.+ ++||.+ .++.+||+|||+..+++++
T Consensus        14 ~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~-~sa~~GGdLG~~~~~~l~~   92 (123)
T 3i6c_A           14 RVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDC-SSAKARGDLGAFSRGQMQK   92 (123)
T ss_dssp             EEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSS-GGGGGTTEEEEEETTTSCH
T ss_pred             EEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCC-chhhhCCceeeEcCCCCCH
Confidence            47999999875321             22233444556666677776699999 999965 6889999999999999999


Q ss_pred             chhhcccccCCCCCCCCC
Q 022496           68 SPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        68 ~~e~~~~~~~~~~i~~~~   85 (296)
                      +|+.++|.+++|+||+|.
T Consensus        93 ~f~~a~f~l~~GeiS~pv  110 (123)
T 3i6c_A           93 PFEDASFALRTGEMSGPV  110 (123)
T ss_dssp             HHHHHHHHSCTTCBCSCE
T ss_pred             HHHHHHHhCCCCCccccE
Confidence            999999999999999874

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=98.86  E-value=6.9e-11  Score=89.16  Aligned_cols=82  Identities=6%  Similarity=-0.057  Sum_probs=71.5

Q ss_pred             ccccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCC
Q 022496            2 MLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEG   80 (296)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~   80 (296)
                      .+|.+||+-+.+++.+.......++++..+..| .+|+.+ ++||+|+ ++.+||+|||+..+++.++|+.++|.+++|+
T Consensus         7 ~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G-~~F~~lA~~~S~d~-sa~~GGdlG~~~~~~l~~~f~~a~~~l~~Ge   84 (112)
T 3gpk_A            7 EYRIGEIFLAATEENKPQVFANAEKIVEQLKQG-GSFVAYARQYSEAS-TAAVGGDLGWIRLAQLPTELATTAASMGPGQ   84 (112)
T ss_dssp             EEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCST-TGGGTTEEEEECGGGSCHHHHHHHHHCCTTC
T ss_pred             EEEEEEEEEeCChhhHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCc-chhcCcccceEcccccCHHHHHHHHhCCCCC
Confidence            368899998876666777777788888877777 499999 9999994 8899999999999999999999999999999


Q ss_pred             CCCCC
Q 022496           81 SSPGG   85 (296)
Q Consensus        81 i~~~~   85 (296)
                      ||+|.
T Consensus        85 iS~pv   89 (112)
T 3gpk_A           85 LAGPV   89 (112)
T ss_dssp             EEEEE
T ss_pred             ccceE
Confidence            99774

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.81  E-value=1.4e-10  Score=93.64  Aligned_cols=83  Identities=16%  Similarity=0.019  Sum_probs=66.6

Q ss_pred             ccccccCCchhhhh-------------ccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccC
Q 022496            2 MLRASQLASPVLCA-------------ITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFT   67 (296)
Q Consensus         2 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~   67 (296)
                      .+|++||+-+....             .+......+++++..+..|...|+.| ++||.+ .++.+||+|||+..++|++
T Consensus        57 ~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~~Sd~-~sa~~GGdLG~~~~~~l~~  135 (166)
T 3tc5_A           57 RVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDC-SSAKARGDLGAFSRGQMQK  135 (166)
T ss_dssp             CEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSS-GGGGGTTEEEEECTTSSCH
T ss_pred             ceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHHHHcCccCHHHHHHHhCcc-cHHhcCCccceecccccCH
Confidence            47999999885421             22333444556666677776799999 999955 7899999999999999999


Q ss_pred             chhhcccccCCCCCCCCC
Q 022496           68 SPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        68 ~~e~~~~~~~~~~i~~~~   85 (296)
                      +|+.++|.+++|+||.+.
T Consensus       136 ~f~~a~f~l~~GeiS~pv  153 (166)
T 3tc5_A          136 PFEDASFALRTGEMSGPV  153 (166)
T ss_dssp             HHHHHHHHSCTTCBCCCE
T ss_pred             HHHHHHHhCCCCCCcccE
Confidence            999999999999999885

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=98.67  E-value=4.9e-10  Score=87.87  Aligned_cols=83  Identities=8%  Similarity=-0.043  Sum_probs=67.0

Q ss_pred             ccccccCCchhh-----------------hhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecc
Q 022496            2 MLRASQLASPVL-----------------CAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIIS   63 (296)
Q Consensus         2 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~   63 (296)
                      .+|++||+-+..                 ++.+......+++++..+..|...|+.+ ++||+++ ++.+||+|||+..+
T Consensus        26 ~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~-sa~~GGdLG~~~~~  104 (139)
T 1j6y_A           26 QVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCS-SAKRGGDLGSFGRG  104 (139)
T ss_dssp             SCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHH-HHHTCSEEEECSSS
T ss_pred             eEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCc-hhhcCCeeeeeccc
Confidence            478999997653                 2233444455567777777776679999 9999775 78899999999999


Q ss_pred             cccCchhhcccccCCCCCCCCC
Q 022496           64 RSFTSPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        64 ~~~~~~e~~~~~~~~~~i~~~~   85 (296)
                      +++++|+.++|.+++|+||+|.
T Consensus       105 ~l~~~f~~a~~~l~~GeiS~pv  126 (139)
T 1j6y_A          105 QMQKPFEEATYALKVGDISDIV  126 (139)
T ss_dssp             SSCTHHHHHHHHCCSSSCCSCE
T ss_pred             ccCHHHHHHHHcCCCCCccccE
Confidence            9999999999999999999875

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=98.63  E-value=1.1e-09  Score=81.43  Aligned_cols=82  Identities=9%  Similarity=-0.117  Sum_probs=67.0

Q ss_pred             ccccccCCchhh----hhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhccccc
Q 022496            2 MLRASQLASPVL----CAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSS   76 (296)
Q Consensus         2 ~~~~~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~   76 (296)
                      .+|.+||+-+.+    ++.+.......++++..+..|. .|+.+ ++||+++ ++.+||++||+..+.+.++|+.+.|.+
T Consensus         2 ~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~~g~-~F~~lA~~~S~~~-s~~~gG~lg~~~~~~l~~~f~~a~~~l   79 (103)
T 2pv1_A            2 ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGA-DFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTA   79 (103)
T ss_dssp             CEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHCCST-TGGGTTEEEEECGGGSCHHHHHHTTTC
T ss_pred             cEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHhCCCc-ccccCCccceEchhhcCHHHHHHHHcC
Confidence            368899986643    3444445566677777776774 89999 9999997 789999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 022496           77 GTEGSSPGG   85 (296)
Q Consensus        77 ~~~~i~~~~   85 (296)
                      ++|+||+|.
T Consensus        80 ~~G~is~pv   88 (103)
T 2pv1_A           80 KKGDIVGPI   88 (103)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCeeccE
Confidence            999999774

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=98.62  E-value=7.3e-10  Score=83.56  Aligned_cols=84  Identities=10%  Similarity=-0.091  Sum_probs=67.4

Q ss_pred             ccccccCCchhhhhc-------cccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcc
Q 022496            2 MLRASQLASPVLCAI-------TQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAAS   73 (296)
Q Consensus         2 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~   73 (296)
                      .+|.+||+-+.+...       +.......++++..+..|...|+.+ ++||+++.++.+||+|||+..+++.++|+.+.
T Consensus         7 ~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~~f~~a~   86 (111)
T 2jzv_A            7 SKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKAL   86 (111)
T ss_dssp             EEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHHHHHH
T ss_pred             EEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCccceecCCcccHHHHHHH
Confidence            368899986644221       2223445566777777774589999 99999998999999999999999999999999


Q ss_pred             cccCCCCCCCCC
Q 022496           74 FSSGTEGSSPGG   85 (296)
Q Consensus        74 ~~~~~~~i~~~~   85 (296)
                      |.+++|+||.|.
T Consensus        87 ~~l~~G~is~pv   98 (111)
T 2jzv_A           87 FKLKDGEVSEVV   98 (111)
T ss_dssp             HTCCTTCBCCCE
T ss_pred             HhCCCCCcCccE
Confidence            999999999874

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=98.59  E-value=1.4e-09  Score=88.83  Aligned_cols=83  Identities=13%  Similarity=-0.025  Sum_probs=65.7

Q ss_pred             ccccccCCchhhhh--------------ccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeeccccc
Q 022496            2 MLRASQLASPVLCA--------------ITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSF   66 (296)
Q Consensus         2 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~   66 (296)
                      .+|++||+-+....              .+......+++++..+..|...|+.| ++||.+ .++.+||+|||+..+++.
T Consensus        67 ~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~-~sa~~GGdLG~~~~~~l~  145 (177)
T 1yw5_A           67 QVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDC-SSHDRGGDLGFFSKGQMQ  145 (177)
T ss_dssp             CEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCS-GGGGGTTEEEEECTTSSC
T ss_pred             eEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCC-cchhcCCccceecccccC
Confidence            37889998765321              13333344556667677776679999 999977 588999999999999999


Q ss_pred             CchhhcccccCCCCCCCCC
Q 022496           67 TSPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        67 ~~~e~~~~~~~~~~i~~~~   85 (296)
                      ++|+.++|.+++|+||.|.
T Consensus       146 ~~f~~a~f~L~~GeiS~pv  164 (177)
T 1yw5_A          146 PPFEEAAFNLHVGEVSNII  164 (177)
T ss_dssp             HHHHHHHHTSCTTCBCCCE
T ss_pred             HHHHHHHHcCCCCCcCCeE
Confidence            9999999999999999885

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=98.57  E-value=8.1e-09  Score=75.18  Aligned_cols=73  Identities=15%  Similarity=-0.007  Sum_probs=60.8

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeee-cccccCchhhcccccCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEG   80 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~-~~~~~~~~e~~~~~~~~~~   80 (296)
                      ++.+||+-+.        ....++++..+..|. .|+.+ ++||+++ ++.+||++||+. .+++.++|+.+.|.+++|+
T Consensus         5 ~~~~hIl~~~--------~~~A~~i~~~l~~g~-~F~~lA~~~S~~~-s~~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~   74 (93)
T 1zk6_A            5 IRASHILVAD--------KKTAEEVEKKLKKGE-KFEDLAKEYSTDS-SASKGGDLGWFAKEGQMDETFSKAAFKLKTGE   74 (93)
T ss_dssp             EEEEEEEESS--------HHHHHHHHHHHHHTC-CHHHHHHHHCCSG-GGGGTTEEEEECTTTSSCTTHHHHHHHSCTTC
T ss_pred             EEEEEEEecc--------HHHHHHHHHHHHCCC-CHHHHHHHhCCCc-hhhhCCeeeeecccccCCHHHHHHHHcCCCCC
Confidence            5788887652        233455666666674 89999 9999999 889999999999 9999999999999999999


Q ss_pred             CCCCC
Q 022496           81 SSPGG   85 (296)
Q Consensus        81 i~~~~   85 (296)
                      ||.|.
T Consensus        75 is~pv   79 (93)
T 1zk6_A           75 VSDPV   79 (93)
T ss_dssp             BCCCE
T ss_pred             ccceE
Confidence            99874

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=98.56  E-value=1.4e-09  Score=80.73  Aligned_cols=76  Identities=9%  Similarity=-0.195  Sum_probs=61.6

Q ss_pred             ccccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCC
Q 022496            2 MLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEG   80 (296)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~   80 (296)
                      .+|++||+-..      ......++++..+..|. .|+.+ ++||+++.++.+||+|||+..+.+.++|+.++|. ++|+
T Consensus         3 ~~~~~hIl~~~------~~~~~A~~i~~~l~~G~-~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-~~Ge   74 (102)
T 2kgj_A            3 PQRTRYSIIQT------KTEDEAKAVLDELNKGG-DFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-EKGQ   74 (102)
T ss_dssp             CCEEEEEEEEE------SSHHHHHHHHHHHHHTS-CHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-STTC
T ss_pred             EEEEEeeecCh------hhHHHHHHHHHHHHCCC-CHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-CCCC
Confidence            36788998321      11344456666666674 89999 9999999899999999999999999999999999 9999


Q ss_pred             CCCCC
Q 022496           81 SSPGG   85 (296)
Q Consensus        81 i~~~~   85 (296)
                      ||+|.
T Consensus        75 iS~pv   79 (102)
T 2kgj_A           75 LSGVI   79 (102)
T ss_dssp             EEEEE
T ss_pred             ccccE
Confidence            98774

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=98.55  E-value=8.3e-09  Score=75.77  Aligned_cols=74  Identities=9%  Similarity=-0.075  Sum_probs=61.4

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++.+||+-+.        ....+++++.+..|. .|+.+ ++||+|..++.+||++||+..+.+.++|+.+.|.+++|+|
T Consensus        10 ~~~~hIl~~~--------~~~A~~i~~~l~~g~-~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G~i   80 (97)
T 2rqs_A           10 IKCSHILVKK--------QGEALAVQERLKAGE-KFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEV   80 (97)
T ss_dssp             EEEEEEEESC--------HHHHHHHHHHHTTTC-CHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTTCTTSCB
T ss_pred             EEEEEEEeCC--------HHHHHHHHHHHHCCC-CHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHcCCCCCc
Confidence            6788887652        223355556566664 89999 9999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 022496           82 SPGG   85 (296)
Q Consensus        82 ~~~~   85 (296)
                      |+|.
T Consensus        81 s~pv   84 (97)
T 2rqs_A           81 SEPV   84 (97)
T ss_dssp             CCCE
T ss_pred             cccE
Confidence            9874

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=98.50  E-value=7.2e-09  Score=75.33  Aligned_cols=73  Identities=4%  Similarity=-0.199  Sum_probs=60.2

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      +|++||+-+..        ...++++..+..|. .|+.+ ++||.++ ++.+||+|||+..+++.++|+.+.|.+++|+|
T Consensus         4 ~~~~hIl~~~~--------~~A~~i~~~l~~g~-~F~~lA~~~S~~~-s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~i   73 (92)
T 1jns_A            4 AAALHILVKEE--------KLALDLLEQIKNGA-DFGKLAKKHSICP-SGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEP   73 (92)
T ss_dssp             EEEEEEEESSH--------HHHHHHHHHHHHTC-CHHHHHHHHHCST-TTTTGGGCCEEETTSSCHHHHHHHHHSCTTCC
T ss_pred             EEEEEEEeCCH--------HHHHHHHHHHHCCC-CHHHHHHHhCCCc-chhcCCeeeEEcCcccCHHHHHHHHhCCCCCc
Confidence            67888876543        23455666666675 89999 9999875 78999999999999999999999999999999


Q ss_pred             CCCC
Q 022496           82 SPGG   85 (296)
Q Consensus        82 ~~~~   85 (296)
                      |+|.
T Consensus        74 s~pv   77 (92)
T 1jns_A           74 TGPL   77 (92)
T ss_dssp             EEEE
T ss_pred             CCcE
Confidence            9774

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=98.38  E-value=2.9e-08  Score=73.38  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=56.9

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++++||+-+..        ...+++.+.+..|. +|+.+ ++||+|+  +.+||+|||+..+++.++|+.++|.+++|+|
T Consensus         8 v~~~~Ilv~~~--------~~A~~i~~~l~~G~-~F~~lA~~~S~d~--a~~GGdlG~~~~~~l~~~f~~a~~~l~~G~v   76 (101)
T 3ui4_A            8 VKVRHILCEKH--------GKIMEAMEKLKSGM-RFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQEAAFALPVSGM   76 (101)
T ss_dssp             EEEEEEEESSH--------HHHHHHHHHHHTTC-CHHHHHHHHCSSS--GGGTTEEEEEETTSSCHHHHHHHHTSCCCBT
T ss_pred             EEEEEEEECCH--------HHHHHHHHHHHCCC-CHHHHHHHhCcCc--hhcCCceeeEcCCCCCHHHHHHHHhCCCCCC
Confidence            67888886621        22344555555664 89999 9999984  7899999999999999999999999999999


Q ss_pred             CC
Q 022496           82 SP   83 (296)
Q Consensus        82 ~~   83 (296)
                      |+
T Consensus        77 s~   78 (101)
T 3ui4_A           77 DK   78 (101)
T ss_dssp             TB
T ss_pred             cc
Confidence            96

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=97.64  E-value=1.3e-06  Score=78.07  Aligned_cols=90  Identities=10%  Similarity=-0.080  Sum_probs=66.7

Q ss_pred             ccccCCc-hhh---hhccccccccccccCCc-cccccCCchhH-HhhhhccCCCCCCCceeeeeccccc---Cchhhccc
Q 022496            4 RASQLAS-PVL---CAITQSLIPTLNLSSSS-SLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSF---TSPKAASF   74 (296)
Q Consensus         4 ~~~~~~~-~~~---~~~~~~~~~~~~~~r~~-~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~---~~~e~~~~   74 (296)
                      +.+||+- +.+   .+. .......+.++.. +..|. .|+.+ ++||.++.++.+||++||+..+.++   ++|+.+.|
T Consensus       161 ~~~~Ili~~~~~~~~~~-~~~~~~a~~i~~~~l~~g~-~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~~~~a~~  238 (325)
T 3nrk_A          161 RYRIISIAPENDSIQEE-NRLYKEVSEIRKSILADPS-SFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAA  238 (325)
T ss_dssp             EEEEEEECCSSSCHHHH-HHHHHHHHHHHHHHHHCTT-HHHHHHHSTTSCHHHHHTTTEEEEEEHHHHHHHCHHHHHHHT
T ss_pred             EEEEEEEecCCCCccch-HHHHHHHHHHHHHHHhCCC-CHHHHHHHhCCCccccccCCcccccccccccccCHHHHHHHH
Confidence            5567765 222   111 2334445666666 66775 99999 9999999998999999999999999   99999999


Q ss_pred             ccCCCCCCCCCCCc--eEEEeeE
Q 022496           75 SSGTEGSSPGGGDR--EILVQHL   95 (296)
Q Consensus        75 ~~~~~~i~~~~~~~--~~~~~~I   95 (296)
                      .+++|+||+|....  -+|+-.+
T Consensus       239 ~l~~Geis~pv~t~~~G~hIikv  261 (325)
T 3nrk_A          239 PLPNGGVSEVFRDERKRYCILKI  261 (325)
T ss_dssp             TCCTTCBCCCEECTTSCEEEEEE
T ss_pred             cCCCCCCCceEEeCCCeEEEEEE
Confidence            99999999884332  3544444

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=97.59  E-value=3e-06  Score=72.84  Aligned_cols=61  Identities=8%  Similarity=-0.120  Sum_probs=51.2

Q ss_pred             CCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCC-CC-CCceEEEeeEe
Q 022496           36 QKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP-GG-GDREILVQHLL   96 (296)
Q Consensus        36 ~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~-~~-~~~~~~~~~Il   96 (296)
                      ..|+.+ ++||.++.++.+||++||+..+++.++|+.+.|.+++|++|+ |. .+.-+|+-.+.
T Consensus       143 ~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~  206 (252)
T 3rfw_A          143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKE  206 (252)
T ss_dssp             HHHHHHHHHHCCCTTTGGGTTEEEEECSSSSCHHHHHHHHHSCTTEECSSCEEETTEEEEEEEE
T ss_pred             ccHHHHHHHhCCCCchhhcCCcccccccccccHHHHHHHHcCCCCCccCceEEECCEEEEEEEE
Confidence            379999 999999998888999999999999999999999999999994 63 33445554443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=97.18  E-value=0.00021  Score=56.64  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHH------------HHhh-CCCCceecccccccCCC---CCccCCC-CCCCcE
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEE------------VALS-SLPGFQVLPLRQFGSWG---PDITVKF-DPQKDT  250 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~e------------y~~g-hIpgA~~ip~~~l~~~~---~~~~~~~-~~~~~i  250 (296)
                      ++.+++..+...+    -..+||+|++.|            +..+ +|+|.+|+|+....-..   ..+...+ ..+++|
T Consensus        30 ~~~~d~~~L~~~G----i~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~~~~~~~~~~~~~~l~~~~~pV  105 (156)
T 2f46_A           30 LTKADAEQIAQLG----IKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAEYPV  105 (156)
T ss_dssp             CCGGGHHHHHHHT----CCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTTTCCHHHHHHHHHHHHTSCSSE
T ss_pred             CCHHHHHHHHHCC----CCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCCCCCHHHHHHHHHHHHhCCCCE
Confidence            4455555444332    347999997755            3334 59889999986531000   0001111 247899


Q ss_pred             EEEeCCChhHHHHHHH-HHHcCCC
Q 022496          251 YVMCHHGMRSLQVAQW-LQTQGFR  273 (296)
Q Consensus       251 v~~C~~G~rs~~aa~~-L~~~G~~  273 (296)
                      +|||.+|.|+..++.. |...|.+
T Consensus       106 lvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          106 LAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             EEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCHHHHHHHHHHHcCCC
Confidence            9999999998755443 3445654

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}

Probab=89.97  E-value=0.3  Score=41.23  Aligned_cols=55  Identities=7%  Similarity=-0.164  Sum_probs=40.8

Q ss_pred             HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCCCCCC-CCceEEEeeEee
Q 022496           42 ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGG-GDREILVQHLLV   97 (296)
Q Consensus        42 ~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i~~~~-~~~~~~~~~Il~   97 (296)
                      .+..+....+ .+|++||+..+.+.++|+.+.|.+++|++|+|. .+..+|+-.+.=
T Consensus       150 ~~l~~g~~f~-l~g~lg~~~~~~l~~~~~~a~~~l~~G~is~pv~t~~G~hiikv~~  205 (252)
T 3rgc_A          150 ENIKNTKKTI-LKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKS  205 (252)
T ss_dssp             HHHHHHCCCC-SCCEEEEEETTTSCHHHHHHHHHSCTTCBCCCBTTTTCEEEEEEEE
T ss_pred             HHHHhCCCcc-cccccceecHHhcCHHHHHHHHcCCCCCcCCcEEeCCeEEEEEEec
Confidence            3444444444 689999999999999999999999999999874 444455544443

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=86.30  E-value=0.083  Score=42.07  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.9

Q ss_pred             cEEEecCChHHHHhhCCCCceecccccccC
Q 022496          206 AQLIDVREPEEVALSSLPGFQVLPLRQFGS  235 (296)
Q Consensus       206 ~~llDvR~~~ey~~ghIpgA~~ip~~~l~~  235 (296)
                      ..+||||++.||.    |||+|||...+.-
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE~  147 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVEV  147 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHHH
Confidence            4899999999999    9999999887654

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=83.47  E-value=0.49  Score=36.06  Aligned_cols=68  Identities=24%  Similarity=0.356  Sum_probs=38.0

Q ss_pred             cEEEecCChHHHHhhCCCC--ceecccccccCCCCC--------ccCCCCCCCcEEEEeCCCh-hHH-HHHHHHH-HcCC
Q 022496          206 AQLIDVREPEEVALSSLPG--FQVLPLRQFGSWGPD--------ITVKFDPQKDTYVMCHHGM-RSL-QVAQWLQ-TQGF  272 (296)
Q Consensus       206 ~~llDvR~~~ey~~ghIpg--A~~ip~~~l~~~~~~--------~~~~~~~~~~iv~~C~~G~-rs~-~aa~~L~-~~G~  272 (296)
                      ..++|+|...+......+|  .+++|+.+.......        +...+..+.+|+|+|..|. ||. .++..|. ..|.
T Consensus        37 ~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~  116 (150)
T 4erc_A           37 RHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGL  116 (150)
T ss_dssp             EEEEECSSSCCTTGGGCTTSEEEECCCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEcCCCCCCcccccCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence            4789999875543333344  345665544211000        0001235689999999985 886 4454444 4676


Q ss_pred             C
Q 022496          273 R  273 (296)
Q Consensus       273 ~  273 (296)
                      +
T Consensus       117 ~  117 (150)
T 4erc_A          117 A  117 (150)
T ss_dssp             C
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	7e-20
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	4e-15
d1j6ya_	120	d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Tha	1e-13
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	1e-12
d1eq3a_	96	d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar	7e-12
d1m5ya3	108	d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase	8e-12
d1pina2	119	d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain	3e-11
d1jnsa_	92	d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichi	4e-11
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	1e-10
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	3e-10
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	4e-10
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	9e-10
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	4e-09
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	3e-08
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	1e-07
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	1e-06
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	3e-06
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	4e-06
d2pv2a1	103	d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase	5e-06
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	2e-05
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	4e-05
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	0.001
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	0.004

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 80.5 bits (198), Expect = 7e-20
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 244
            + I   + H+K+Q+      A L+D+R+P+  A+        L                
Sbjct: 4   FECINVADAHQKLQEKE----AVLVDIRDPQSFAMGHAVQAFHLTND----TLGAFMRDN 55

Query: 245 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 293
           D      VMC+HG  S   AQ+L  QG+  V+++ GG  A+  +    +
Sbjct: 56  DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEV 104

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDITVK 243
           +  + P + +K +Q+   + +  LIDVR+P+E+     P  +      +           
Sbjct: 22  MVMLSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSG 78

Query: 244 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP 294
            DP+K   V C    R+    + L+  GF+ ++N  GG+  +  +  PS+ 
Sbjct: 79  LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 87  DREILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQL 146
           D E  +     +E  +  L  ++  +  G+ +  ++A   S C S   GG LG   +GQ+
Sbjct: 28  DPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQM 87

Query: 147 VPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLS 178
              FEE  +   +  ++    T  G H+++  +
Sbjct: 88  QKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 120

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.4 bits (148), Expect = 1e-12
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 181 EASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI 240
           E+ +   +     H  +         + +DVR PEE +     G   +P    G+ G   
Sbjct: 3   ESRVPSSVSVTVAHDLLL-----AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSK 57

Query: 241 TVKF--------DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
              F            +  V C  G RS++    L   GF  V ++ GG  A+A    P
Sbjct: 58  NTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLP 116

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 7e-12
 Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 11/99 (11%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 148
            + V+H+L ++     + E   ++  G    +++A ++S   ++  G + GW+ +G +V 
Sbjct: 2   AVKVRHILCEKH--GKIMEAMEKLKSG-MRFNEVAAQYSEDKARQGGDL-GWMTRGSMVG 57

Query: 149 EFEEVAFTTPLNKVARC-------KTKFGWHLLQVLSER 180
            F+E AF  P++ + +        KTKFG+H++ V   +
Sbjct: 58  PFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 58.6 bits (141), Expect = 8e-12
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 89  EILVQHLLVK-------EDDLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGW 140
           E+  +H+L+K       E     L ++   +  G+   +  A E S  P S  +GG LGW
Sbjct: 6   EVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 65

Query: 141 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSERE 181
                  P F +        +++    + FGWHL+++L  R 
Sbjct: 66  ATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN 107

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 20/118 (16%)

Query: 80  GSSPGGGDREILVQHLLV-------------------KEDDLNLLSELQRRVSQGREDLS 120
           G +  G    +   HLLV                   KE+ L L++   +++  G ED  
Sbjct: 1   GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFE 60

Query: 121 DLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 177
            LA + S C S    G LG   +GQ+   FE+ +F     +++    T  G H++   
Sbjct: 61  SLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 118

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

 Score = 56.2 bits (135), Expect = 4e-11
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 147
           +     H+LVKE+ L    +L  ++  G  D   LA +HSICPS   GG LG  R+GQ+V
Sbjct: 2   KTAAALHILVKEEKL--ALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMV 58

Query: 148 PEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 177
           P F++V F+ P+ +      T+FG+H+++VL
Sbjct: 59  PAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 89

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 245
             I P  L   + +P      +++D       A                S       +  
Sbjct: 5   DTIDPTTLADWLGEPG----TRVLDFTASANYAK----RHIPGAAWVLRSQLKQALERLG 56

Query: 246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 291
             +   + C   + +      +Q    + VF + GG  A+     P
Sbjct: 57  TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLP 102

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.2 bits (129), Expect = 3e-10
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 190 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKD 249
             ++   +      +E  L+DVRE +  A +       LPL +          + D    
Sbjct: 6   FHDIRAALLA---RRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRD--TP 60

Query: 250 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 286
             V       +   AQ L   G+  V  + GG+  + 
Sbjct: 61  ITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWR 97

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           +  +E+   +       EA ++D R  +E    S+PG   +P  +      ++    DP+
Sbjct: 26  LAAEEVQALLD---ARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAEL--APDPR 80

Query: 248 KDTYVMCHHGMRSLQVAQWLQTQGFRR-VFNVSGGIHAYA 286
               V C    RS+   Q L   G    V  +  G   + 
Sbjct: 81  TRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWT 120

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.8 bits (128), Expect = 9e-10
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 175 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 234
           + +++R    ++ +    L +   + +  +   L+DVR PEE     LPG +  P  Q  
Sbjct: 14  RAVADRAG--VERLDLAGLAQWQDEHD--RTTYLLDVRTPEEYEAGHLPGSRSTPGGQLV 69

Query: 235 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA-YATKVDPSI 293
                +           ++   G+R+   A WL   G+ +V  + G   A ++ +   S 
Sbjct: 70  QETDHV--ASVRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSA 126

Query: 294 P 294
           P
Sbjct: 127 P 127

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 172 HLLQVLSEREASLLQDIQPDELHKKMQDP--NFHKEAQLIDVREPEEVALSSLPGFQVLP 229
           +L   ++ +   L + I P+ +   +     N  KE  +ID R P E     + G   L 
Sbjct: 10  YLFHTVAGKHQDL-KYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLH 68

Query: 230 LRQF-GSWGPDITVKFDPQKDTYVM---CHHGMRSLQVAQWLQTQ----------GFRRV 275
           + +    +     +     K   V+        R  ++ ++++ +           +  +
Sbjct: 69  MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPEL 128

Query: 276 FNVSGGIHAY 285
           + + GG   +
Sbjct: 129 YVLKGGYKEF 138

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 172 HLLQVLSEREASLLQDIQPDELHKKMQ--DPNFHKEAQLIDVREPEEVALSSLPGFQVLP 229
            LLQ +  +   L + I P+ +   +     N   +  ++D R P E     +     LP
Sbjct: 10  FLLQTVDGKHQDL-KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLP 68

Query: 230 LRQFGSWG--PDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ----------GFRR 274
           L +                 K   ++ H      R  ++ ++++ +           +  
Sbjct: 69  LERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPE 128

Query: 275 VFNVSGGIHAYATK 288
           ++ + GG   +  +
Sbjct: 129 MYILKGGYKEFFPQ 142

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 23/120 (19%)

Query: 190 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG-------------------FQVLPL 230
            D L  ++   +      + D R P+E     +                           
Sbjct: 16  RDYLLGRLGAADL----AIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALR 71

Query: 231 RQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 290
            +    G    +   P K+    C    RS       +  G+ RV   +G    +    D
Sbjct: 72  IRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPD 131

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 182 ASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT 241
           ASL   I+P +L  ++  P       L+D+      A   +PG + +  ++     P   
Sbjct: 5   ASLPLVIEPADLQARLSAPEL----ILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAP 60

Query: 242 VKF----------------DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
                                          G  + +    L   G +R   ++GG+ A+
Sbjct: 61  GLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAW 120

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 13/108 (12%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 247
           I   +L    + PN      +IDVR+ E      + G        F      +      +
Sbjct: 10  ITSTQLLPLHRRPN----IAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDK 65

Query: 248 KDTYVMCHH-GMRSLQVAQWLQT--------QGFRRVFNVSGGIHAYA 286
                      +R    A+ L           G + +  +  G + + 
Sbjct: 66  DTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWE 113

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 27/127 (21%)

Query: 191 DELHKKMQDPNFHKEAQLIDVREPEEVA-----------------LSSLPGFQVLPLRQF 233
           +++ + ++   F    QL+D R                        S    F        
Sbjct: 16  EQVLENLESKRF----QLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDG 71

Query: 234 GSWGPDI------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 287
               P+         K D  K     C  G+ +  +A      G   V    G    +  
Sbjct: 72  FEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFH 131

Query: 288 KVDPSIP 294
           +  P   
Sbjct: 132 RAPPETW 138

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 103

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 89  EILVQHLLVK----------EDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGML 138
           E+ + H+L+            +  +    +  +   G  D   LA+ HS       GG +
Sbjct: 2   ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQM 60

Query: 139 GWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 180
           GW R  +L   F +   T     +    ++  G+H+L+V   R
Sbjct: 61  GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 25/116 (21%)

Query: 191 DELHKKMQDPNFHKEAQLIDVREPEE---------------VALSSLPGFQVLPLRQFGS 235
            ++     +      AQ+ID R                       +L       +R+   
Sbjct: 9   TDVLLASHENT----AQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGEL 64

Query: 236 WGPDITVK------FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
              D              K   V C  G+ +  V   L T     V    G    +
Sbjct: 65  KTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 28/127 (22%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW----------G 237
           I   EL+  M D N      ++D R  ++   S +     +P                  
Sbjct: 3   ITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLP 60

Query: 238 PDITVKFDPQKDTYVMCHH----GMRSLQVAQWLQTQ------------GFRRVFNVSGG 281
            D    +  + +   +         + LQ+   L++                    + GG
Sbjct: 61  DDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGG 120

Query: 282 IHAYATK 288
              +   
Sbjct: 121 YENWLLC 127

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/113 (10%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREP-EEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 246
           +  D + + ++DP      ++++V E         +PG Q +  ++            + 
Sbjct: 9   VSTDWVQEHLEDPKV----RVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEE 64

Query: 247 QKDTYV--------------MCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 285
           +    +                 +   +     + +  G + V  ++GG   +
Sbjct: 65  EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKW 117

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 30/128 (23%)

Query: 188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT------ 241
                L+++++  N  +   L+D R  E    S +     + +                 
Sbjct: 18  KTVAWLNEQLELGN--ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRA 75

Query: 242 -----------VKFDPQKDTYVMCHHG----------MRSLQVAQWLQTQGFRRVFNVSG 280
                       +        +                    + + L+     R F + G
Sbjct: 76  LFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLK-DEGCRAFYLEG 134

Query: 281 GIHAYATK 288
           G   +  +
Sbjct: 135 GFSKFQAE 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	99.9
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	99.9
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	99.89
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.89
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	99.89
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.88
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.88
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.88
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.88
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	99.87
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	99.87
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.86
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.86
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.84
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.83
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.81
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.8
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.8
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.79
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.79
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.77
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.64
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.57
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.48
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	98.92
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	98.88
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	98.78
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	98.51
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	98.47
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	98.32
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	89.68
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	86.13
d1a1va2	299	HCV helicase domain {Human hepatitis C virus (HCV)	84.35

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.4e-24  Score=157.50  Aligned_cols=89  Identities=39%  Similarity=0.729  Sum_probs=83.0

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCcee-cee
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK  166 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs-pv~  166 (296)
                      .++.++|||++.+  ++|++++++|+ +|++|+++|++||+|+++.+||+|||++.++++|+|.++++.|++|++| ||+
T Consensus         2 ~~~~a~HIlv~~~--~~A~~i~~~l~-~g~~F~~lA~~~S~d~s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G~vs~pi~   78 (92)
T d1jnsa_           2 KTAAALHILVKEE--KLALDLLEQIK-NGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLH   78 (92)
T ss_dssp             CEEEEEEEEESSH--HHHHHHHHHHH-HTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEE
T ss_pred             CcceEEEEEeCCH--HHHHHHHHHHH-CCCCHHHHHHHhCCCcccchhhhhceeeHhhhhhHHHHHHHhCCCCCcCCCEE
Confidence            4689999999854  55999999996 8999999999999999888999999999999999999999999999999 899


Q ss_pred             ecCcceEEEeehh
Q 022496          167 TKFGWHLLQVLSE  179 (296)
Q Consensus       167 ~~~G~~Ii~v~~~  179 (296)
                      |++|||||++.++
T Consensus        79 t~~G~HIikv~dr   91 (92)
T d1jnsa_          79 TQFGYHIIKVLYR   91 (92)
T ss_dssp             ETTEEEEEEEECC
T ss_pred             eCCeEEEEEEEeC
Confidence            9999999999875

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.2e-24  Score=161.53  Aligned_cols=94  Identities=29%  Similarity=0.473  Sum_probs=84.5

Q ss_pred             CCCceEEEeeEeeccc-------------------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCC
Q 022496           85 GGDREILVQHLLVKED-------------------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQ  145 (296)
Q Consensus        85 ~~~~~~~~~~Il~~~~-------------------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~  145 (296)
                      ..+++++++|||++.+                   +++.+++++++|++++.+|++||++||+|+++.+||+|||+..++
T Consensus         6 ~~p~~vr~~HILi~~~~~~~~~~~~~~~i~~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~~~~~   85 (119)
T d1pina2           6 GEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQ   85 (119)
T ss_dssp             CCCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTS
T ss_pred             CCCcEEEEEEEEEecCCCcCchhhhhhhhhhhHHHHHHHHHHHHHHHHcChhhHHHHHHHcCCCccccccccccccccch
Confidence            4558999999999532                   456789999999755689999999999999999999999999999


Q ss_pred             CcHHHHHHHhcCCCCcee-ceeecCcceEEEeeh
Q 022496          146 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLS  178 (296)
Q Consensus       146 l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~~  178 (296)
                      |+|+|.++++.|++|++| ||+|++|||||++.+
T Consensus        86 l~~~f~~~~~~l~~GeiS~pi~t~~G~HIikv~d  119 (119)
T d1pina2          86 MQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  119 (119)
T ss_dssp             SCHHHHHHHHHCCTTCBCCCEECSSCEEEEEECC
T ss_pred             HHHHHHHHHhcCCCCCcCCcEEeCCcEEEEEEeC
Confidence            999999999999999999 899999999999864

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=99.89  E-value=8.4e-24  Score=154.26  Aligned_cols=89  Identities=28%  Similarity=0.570  Sum_probs=81.0

Q ss_pred             ceEEEeeEeeccchHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcCCCCcee----
Q 022496           88 REILVQHLLVKEDDLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA----  163 (296)
Q Consensus        88 ~~~~~~~Il~~~~~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs----  163 (296)
                      +++++||||+...++  |++++++|+ +|++|++||++||+|+ +.+||+|||+..++|+|+|.+++|.|++|++|    
T Consensus         1 ~~v~vrHIl~~~~~~--a~~i~~~i~-~g~~F~~lA~~~S~d~-~~~~G~lG~~~~~~l~~ef~~a~f~l~~g~is~~~~   76 (96)
T d1eq3a_           1 NAVKVRHILCEKHGK--IMEAMEKLK-SGMRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVF   76 (96)
T ss_dssp             CCEEEEEEEECCCST--HHHHHHHHT-TTTSHHHHHHHHCCCT-TTCCSEEEEESSCCSSSHHHHHHHHCCSCCSSTTTB
T ss_pred             CcEEEEEEEECCHHH--HHHHHHHHH-CCCCHHHHHHHhCcCc-cccccccceechHHhhHHHHHHHHhCCCCcCccccc
Confidence            368999999997666  999999995 9999999999999995 56789999999999999999999999999986    


Q ss_pred             ---ceeecCcceEEEeehhh
Q 022496          164 ---RCKTKFGWHLLQVLSER  180 (296)
Q Consensus       164 ---pv~~~~G~~Ii~v~~~~  180 (296)
                         ||+|.+|||||++.+++
T Consensus        77 ~~~pi~T~~G~HIikv~~kr   96 (96)
T d1eq3a_          77 TDPPVKTKFGYHIIMVEGRK   96 (96)
T ss_dssp             CSSCEEETTEEEEEEEEECC
T ss_pred             cCCCEecCCeEEEEEEeeEC
Confidence               79999999999998753

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3e-24  Score=160.85  Aligned_cols=96  Identities=30%  Similarity=0.518  Sum_probs=87.0

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  264 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa  264 (296)
                      ++.++.+++.++++++    +.++||||++.||..||||||+|+|...|...    ...++++++|||||.+|.||..++
T Consensus         4 ~~~Is~~e~~~~l~~~----~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~~----~~~~~~~~~ivv~c~~g~rs~~~a   75 (108)
T d1gmxa_           4 FECINVADAHQKLQEK----EAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF----MRDNDFDTPVMVMCYHGNSSKGAA   75 (108)
T ss_dssp             CEEECHHHHHHHHHTT----CCEEEECSCHHHHHHCEETTCEECCHHHHHHH----HHHSCTTSCEEEECSSSSHHHHHH
T ss_pred             CCEeCHHHHHHHHHCC----CeEEEECCCHHHHHhcCCCCcccccchhHHHH----hhhccccCcccccCCCChHHHHHH
Confidence            3568999999999874    78999999999999999999999999988764    344689999999999999999999


Q ss_pred             HHHHHcCCCceEEccchHHHhhhc
Q 022496          265 QWLQTQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       265 ~~L~~~G~~~v~~l~GG~~~W~~~  288 (296)
                      ..|+.+||+||++|+||+.+|..+
T Consensus        76 ~~L~~~G~~~v~~l~GG~~~W~~~   99 (108)
T d1gmxa_          76 QYLLQQGYDVVYSIDGGFEAWQRQ   99 (108)
T ss_dssp             HHHHHHTCSSEEEETTHHHHHHHH
T ss_pred             HHHHHcCCCCEEEEcChHHHHHHc
Confidence            999999999999999999999765

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.1e-23  Score=155.94  Aligned_cols=94  Identities=27%  Similarity=0.544  Sum_probs=85.5

Q ss_pred             ceEEEeeEeeccc-------hHHHHHHHHHHHhcCCccHHHHHHhhCCCC-cccCCcccccccCCCCcHHHHHHHhcCCC
Q 022496           88 REILVQHLLVKED-------DLNLLSELQRRVSQGREDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPL  159 (296)
Q Consensus        88 ~~~~~~~Il~~~~-------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~  159 (296)
                      .++++||||++++       +++++++++.++++++.+|+++|++||+|+ ++.+||+|||+..++|+++|.+++++|++
T Consensus         5 tev~vrHILi~~~~~~~~~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~~~~~~~~l~~   84 (108)
T d1m5ya3           5 TEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNK   84 (108)
T ss_dssp             EEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCCT
T ss_pred             cEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCcCCccccccccccccccccccHHHHHHHHhCCC
Confidence            6799999999754       466788999999756689999999999997 78899999999999999999999999999


Q ss_pred             Ccee-ceeecCcceEEEeehhhh
Q 022496          160 NKVA-RCKTKFGWHLLQVLSERE  181 (296)
Q Consensus       160 G~vs-pv~~~~G~~Ii~v~~~~~  181 (296)
                      |++| ||+|++||||+++.+++.
T Consensus        85 GeiS~pi~t~~G~hIikl~~~r~  107 (108)
T d1m5ya3          85 GQMSAPVHSSFGWHLIELLDTRN  107 (108)
T ss_dssp             TCBCCCEECSSCEEEEEEEEEEE
T ss_pred             CCCCccEEeCCEEEEEEEEEEec
Confidence            9999 899999999999998653

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.88  E-value=4.7e-23  Score=160.48  Aligned_cols=103  Identities=18%  Similarity=0.276  Sum_probs=86.1

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHH--------hhCCCCceecccccccCCCCCcc-----------CCCCC
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFDP  246 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~--------~ghIpgA~~ip~~~l~~~~~~~~-----------~~~~~  246 (296)
                      ..++.+++.+.+.+    ++.++||+|++.||.        .||||||+|+|+.++.+..+.+.           .++++
T Consensus        12 ~~~s~d~l~~~l~~----~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~   87 (136)
T d1e0ca2          12 PTASRDYLLGRLGA----ADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITP   87 (136)
T ss_dssp             TBCCHHHHHHHTTC----TTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCT
T ss_pred             ceEcHHHHHHhhCC----CCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCC
Confidence            35889999999976    478999999999996        69999999999987754322111           14678


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCCCC
Q 022496          247 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       247 ~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      +++||+||++|.||..+++.|+.+||+||++|+|||.+|.+  ++.+|
T Consensus        88 ~~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~--~~~~P  133 (136)
T d1e0ca2          88 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGN--HPDTP  133 (136)
T ss_dssp             TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTT--CTTCC
T ss_pred             CCceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhc--CCCCC
Confidence            99999999999999999999999999999999999999975  44445

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.6e-23  Score=163.27  Aligned_cols=102  Identities=21%  Similarity=0.284  Sum_probs=88.5

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  264 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa  264 (296)
                      ...++++++.+++.++   ++..+||||++.||..||||||+|+|...|......+..  +++++||+||.+|.||..++
T Consensus        23 ~~~Is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~~~~l~~--~~~~~iV~~C~~g~rs~~aa   97 (136)
T d1yt8a1          23 TPSLAAEEVQALLDAR---AEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAP--DPRTRVIVNCAGRTRSIIGT   97 (136)
T ss_dssp             CCEECHHHHHHHHHTT---CSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHHHHHCC--STTSEEEEECSSSHHHHHHH
T ss_pred             CCccCHHHHHHHHhcC---CCcEEEEcCChhhccceecCCchhhhhhHHHHHhhcccc--cccceEEEEcCCCCchHHHH
Confidence            3569999999998764   468999999999999999999999999998765433322  57889999999999999999


Q ss_pred             HHHHHcCCCc-eEEccchHHHhhhccCC
Q 022496          265 QWLQTQGFRR-VFNVSGGIHAYATKVDP  291 (296)
Q Consensus       265 ~~L~~~G~~~-v~~l~GG~~~W~~~~~~  291 (296)
                      .+|+.+||+| |++|.||+.+|..+..|
T Consensus        98 ~~L~~~G~~~~V~~L~GG~~~W~~~G~p  125 (136)
T d1yt8a1          98 QSLLNAGIPNPVAALRNGTIGWTLAGQQ  125 (136)
T ss_dssp             HHHHHTTCSSCEEEETTHHHHHHHTTCC
T ss_pred             HHHHHcCCCceEEEeCCcHHHHHHCCCC
Confidence            9999999987 99999999999987655

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.3e-23  Score=155.54  Aligned_cols=97  Identities=19%  Similarity=0.133  Sum_probs=83.6

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHHHH
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  267 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~~L  267 (296)
                      .+.+++++.+.++   ++..+||+|++.||..||||||+|+|...+......+.  .+++++||+||.+|.||..++..|
T Consensus         4 ~S~~~l~~~l~~~---~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~~~~~--~~~~~~vv~~~~~g~~s~~~~~~l   78 (101)
T d1yt8a2           4 RTFHDIRAALLAR---RELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARV--PRRDTPITVYDDGEGLAPVAAQRL   78 (101)
T ss_dssp             ECHHHHHHHHHHT---CCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHS--CCTTSCEEEECSSSSHHHHHHHHH
T ss_pred             CcHHHHHHHHHCC---CCeEEEECCCHHHHHhccCCCcccccccchhhhhhhcc--cccCceeeeccchhhhHHHHHHHH
Confidence            5678888887664   47899999999999999999999999988765332222  257889999999999999999999


Q ss_pred             HHcCCCceEEccchHHHhhhcc
Q 022496          268 QTQGFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       268 ~~~G~~~v~~l~GG~~~W~~~~  289 (296)
                      .++||+||++|+|||.+|.++.
T Consensus        79 ~~~G~~nV~~l~GG~~~W~~aG  100 (101)
T d1yt8a2          79 HDLGYSDVALLDGGLSGWRNAG  100 (101)
T ss_dssp             HHTTCSSEEEETTHHHHHHHTT
T ss_pred             HHcCCCcEEEeCChHHHHHHCc
Confidence            9999999999999999999765

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=3.4e-23  Score=157.75  Aligned_cols=101  Identities=26%  Similarity=0.405  Sum_probs=83.9

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCC--------CccCCCCCCCcEEEEeCCCh
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP--------DITVKFDPQKDTYVMCHHGM  258 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~--------~~~~~~~~~~~iv~~C~~G~  258 (296)
                      .++...+.+++.+     +..+||||++.||..||||||+|+|+..+.....        .+...++++++|||||++|.
T Consensus         9 ~i~~~~a~~l~~~-----g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~   83 (119)
T d1tq1a_           9 SVSVTVAHDLLLA-----GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   83 (119)
T ss_dssp             EEEHHHHHHHHHH-----TCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             ccCHHHHHHHHHC-----cCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC
Confidence            4667777777765     4579999999999999999999999876543211        11234678999999999999


Q ss_pred             hHHHHHHHHHHcCCCceEEccchHHHhhhccCCC
Q 022496          259 RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       259 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      ||..++..|.++||+||++|+|||.+|..+..|.
T Consensus        84 rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~  117 (119)
T d1tq1a_          84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT  117 (119)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCC
T ss_pred             cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCc
Confidence            9999999999999999999999999999886653

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.3e-22  Score=150.47  Aligned_cols=92  Identities=23%  Similarity=0.373  Sum_probs=84.5

Q ss_pred             ceEEEeeEeeccc----------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccCCCCcHHHHHHHhcC
Q 022496           88 REILVQHLLVKED----------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT  157 (296)
Q Consensus        88 ~~~~~~~Il~~~~----------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l  157 (296)
                      .+|+++||+++.+          +++.|++++++|+ .|.+|+++|++||+|+++.+||+|||+..++++++|.++++.|
T Consensus         1 te~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~-~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~~~~~i~~l   79 (103)
T d2pv2a1           1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQAR-NGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTA   79 (103)
T ss_dssp             CEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHCCSTTGGGTTEEEEEEGGGSBHHHHHHHHTC
T ss_pred             CceEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCHHHHhcccccccccccccccccccccccchhhhhhhhhc
Confidence            3699999999743          3678999999996 8999999999999999999999999999999999999999999


Q ss_pred             CCCcee-ceeecCcceEEEeehhh
Q 022496          158 PLNKVA-RCKTKFGWHLLQVLSER  180 (296)
Q Consensus       158 ~~G~vs-pv~~~~G~~Ii~v~~~~  180 (296)
                      ++|++| ||++++||||+++.+++
T Consensus        80 ~~G~is~pi~t~~G~hIikl~~~R  103 (103)
T d2pv2a1          80 KKGDIVGPIRSGVGFHILKVNDLR  103 (103)
T ss_dssp             CTTCEEEEEEETTEEEEEEEEEEC
T ss_pred             CCCCCCCcEEECCEEEEEEEeeEC
Confidence            999999 89999999999998753

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=7.3e-23  Score=160.83  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHH------------hhCCCCceecccccccCCCCCccC-----------C
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA------------LSSLPGFQVLPLRQFGSWGPDITV-----------K  243 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~------------~ghIpgA~~ip~~~l~~~~~~~~~-----------~  243 (296)
                      .++.+++.+.+++.    +..+||+|++.||.            .||||||+|+|+..+....+.+..           .
T Consensus        12 i~~~~ev~~~l~~~----~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~g   87 (144)
T d1rhsa2          12 LKTYEQVLENLESK----RFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKK   87 (144)
T ss_dssp             EECHHHHHHHHHHC----CSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTT
T ss_pred             eecHHHHHHHhcCC----CcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcC
Confidence            36788898888863    78999999999996            699999999999988665433322           4


Q ss_pred             CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHhhhccCCCCC
Q 022496          244 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  294 (296)
Q Consensus       244 ~~~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~  294 (296)
                      ++++++||+||.+|.||+.++..|..+||+||++|+|||.+|.+..+|..|
T Consensus        88 i~~~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~p  138 (144)
T d1rhsa2          88 VDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETW  138 (144)
T ss_dssp             CCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGE
T ss_pred             CCCCCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCC
Confidence            688999999999999999999999999999999999999999987776655

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=1.8e-23  Score=159.17  Aligned_cols=91  Identities=23%  Similarity=0.483  Sum_probs=82.2

Q ss_pred             CceEEEeeEeeccc-----------------------hHHHHHHHHHHHhcCCccHHHHHHhhCCCCcccCCcccccccC
Q 022496           87 DREILVQHLLVKED-----------------------DLNLLSELQRRVSQGREDLSDLAVEHSICPSKGEGGMLGWVRK  143 (296)
Q Consensus        87 ~~~~~~~~Il~~~~-----------------------~~~~a~~i~~~l~~~g~~F~~la~~~S~d~~~~~gG~lg~~~~  143 (296)
                      .++++++|||++..                       +.+.+++|+.+|.+++.+|+++|++||+++++.+||+|||+..
T Consensus         5 ~e~vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~GG~lGw~~~   84 (120)
T d1j6ya_           5 RDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGR   84 (120)
T ss_dssp             CCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECSS
T ss_pred             cceEEEEEEEEccCcccchhhhccccccccccccHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCcccccccccccchh
Confidence            38899999999632                       3667899999997555799999999998889999999999999


Q ss_pred             CCCcHHHHHHHhcCCCCcee-ceeecCcceEEEee
Q 022496          144 GQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  177 (296)
Q Consensus       144 ~~l~~~~~~~~~~l~~G~vs-pv~~~~G~~Ii~v~  177 (296)
                      ++++|+|.++++.|++|++| ||+|++|||||+++
T Consensus        85 ~~l~~~f~~~~~~l~~G~is~pi~t~~G~HIikvt  119 (120)
T d1j6ya_          85 GQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT  119 (120)
T ss_dssp             SSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred             hhcChHHHHHHHcCCCCCcCCCEEeCCeeEEEEEe
Confidence            99999999999999999999 89999999999875

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.86  E-value=7.1e-23  Score=159.71  Aligned_cols=107  Identities=22%  Similarity=0.450  Sum_probs=91.3

Q ss_pred             hhcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhC---CCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhH
Q 022496          184 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS---LPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRS  260 (296)
Q Consensus       184 ~~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~gh---IpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs  260 (296)
                      ....++++++.+++.+.   ++.++||||++.||..+|   |+||+|+|...+.....  ...++++++|||||.+|.||
T Consensus        21 ~~~~Isp~e~~~ll~~~---~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~~~--~~~~~~~~~ivvyC~~G~rs   95 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQEN---PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLA--KSGLDPEKPVVVFCKTAARA   95 (137)
T ss_dssp             SSEEECHHHHHHHHHHC---TTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHHH--HHCCCTTSCEEEECCSSSCH
T ss_pred             cCCEEcHHHHHHHHHcC---cCEEEEECCcHHHHHHhccccccccccCCccccccccc--ccccCcccceeeeecccchH
Confidence            34678999999999753   478999999999999999   66789999877654321  12357899999999999999


Q ss_pred             HHHHHHHHHcCCCceEEccchHHHhhhccCCCCCC
Q 022496          261 LQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT  295 (296)
Q Consensus       261 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~~~~~  295 (296)
                      ..++..|.++||+||++|+||+.+|..+..|+++.
T Consensus        96 ~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~  130 (137)
T d1qxna_          96 ALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             HHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             HHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999999988764

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=1.2e-22  Score=157.02  Aligned_cols=101  Identities=22%  Similarity=0.293  Sum_probs=86.4

Q ss_pred             hcCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHH
Q 022496          185 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  264 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa  264 (296)
                      ...++.+++.+++.+..  .+..|||||++.||..||||||+|+|+..+......+  ..+++++||+||.+|.||..++
T Consensus        22 ~~~I~~~e~~~~l~~~~--~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~~~~--~~~~~~~ivl~C~~G~rS~~aa   97 (130)
T d1yt8a4          22 VERLDLAGLAQWQDEHD--RTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHV--ASVRGARLVLVDDDGVRANMSA   97 (130)
T ss_dssp             CEEECHHHHHHHHHCTT--SCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSHHHH--CCSBTCEEEEECSSSSHHHHHH
T ss_pred             CcccCHHHHHHHHHccC--CCEEEEECCCcHHHhcCccCCcccccccccccccccc--cCCccceEEeecCCCccHHHHH
Confidence            46789999999997641  3578999999999999999999999999886543222  2478999999999999999999


Q ss_pred             HHHHHcCCCceEEccchHHHhhhccC
Q 022496          265 QWLQTQGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       265 ~~L~~~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      .+|+++|| +|++|+||+.+|..+..
T Consensus        98 ~~L~~~G~-~v~~l~GG~~aw~~~~g  122 (130)
T d1yt8a4          98 SWLAQMGW-QVAVLDGLSEADFSERG  122 (130)
T ss_dssp             HHHHHTTC-EEEEECSCCGGGCCBCS
T ss_pred             HHHHHcCC-CeEEEcCchHHHHHhcC
Confidence            99999999 79999999999987653

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=5.4e-21  Score=149.41  Aligned_cols=86  Identities=24%  Similarity=0.341  Sum_probs=73.6

Q ss_pred             CcEEEecCChHHHH----------------hhCCCCceecccccccCCCCCccC-----------CCCCCCcEEEEeCCC
Q 022496          205 EAQLIDVREPEEVA----------------LSSLPGFQVLPLRQFGSWGPDITV-----------KFDPQKDTYVMCHHG  257 (296)
Q Consensus       205 ~~~llDvR~~~ey~----------------~ghIpgA~~ip~~~l~~~~~~~~~-----------~~~~~~~iv~~C~~G  257 (296)
                      +..+||+|++.||.                .||||||+|+|+.++.+..+.+..           +++++++||+||++|
T Consensus        20 ~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~~G   99 (141)
T d1uara2          20 KGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIA   99 (141)
T ss_dssp             SEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSSH
T ss_pred             CcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEecCc
Confidence            67899999999996                699999999999988664333221           467899999999999


Q ss_pred             hhHHHHHHHHHH-cCCCceEEccchHHHhhhccC
Q 022496          258 MRSLQVAQWLQT-QGFRRVFNVSGGIHAYATKVD  290 (296)
Q Consensus       258 ~rs~~aa~~L~~-~G~~~v~~l~GG~~~W~~~~~  290 (296)
                      .+|..++.+|.. +||+||++|+|||.+|.++.+
T Consensus       100 ~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~  133 (141)
T d1uara2         100 ERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVG  133 (141)
T ss_dssp             HHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTT
T ss_pred             chHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCC
Confidence            999999999986 799999999999999986433

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=1.7e-21  Score=155.47  Aligned_cols=98  Identities=17%  Similarity=0.269  Sum_probs=87.5

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCChhHHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  265 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G~rs~~aa~  265 (296)
                      ..|++.++.+++.++    +..+||||++.||..||||||+|+|...+...    ...++++++||+||.+|.||..++.
T Consensus         5 ~~Is~~el~~~l~~~----~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~~----~~~~~~~~~vv~~c~~g~rs~~~a~   76 (157)
T d1yt8a3           5 DTIDPTTLADWLGEP----GTRVLDFTASANYAKRHIPGAAWVLRSQLKQA----LERLGTAERYVLTCGSSLLARFAVA   76 (157)
T ss_dssp             CEECHHHHHHHTTST----TEEEEECSCHHHHHHCBCTTCEECCGGGHHHH----HHHHCCCSEEEEECSSSHHHHHHHH
T ss_pred             CEECHHHHHHHHhCC----CeEEEEeCCHHHHhhcccccceeccccccccc----ccccccCcceeeccCCcchHHHHHH
Confidence            568999999999764    68999999999999999999999999887653    2335789999999999999999999


Q ss_pred             HHHHcCCCceEEccchHHHhhhccCC
Q 022496          266 WLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       266 ~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      .|..+||.||++|+||+.+|..+..|
T Consensus        77 ~l~~~G~~~v~~L~GG~~~W~~aGlp  102 (157)
T d1yt8a3          77 EVQALSGKPVFLLDGGTSAWVAAGLP  102 (157)
T ss_dssp             HHHHHHCSCEEEETTHHHHHHHTTCC
T ss_pred             HHhcccCceEEEecCCHHHHhhCCCC
Confidence            99999999999999999999987665

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.9e-20  Score=142.47  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCCc----------cCCCC
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDI----------TVKFD  245 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~~----------~~~~~  245 (296)
                      .++.+++...++++    +..|||+|++.+|.           .||||||+|+|+..+.......          ...++
T Consensus         5 ~~~~~ev~~~~~~~----~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (120)
T d1urha2           5 VVKVTDVLLASHEN----TAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVS   80 (120)
T ss_dssp             BCCHHHHHHHHHHT----CSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCC
T ss_pred             HccHHHHHHHhhCC----CcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccC
Confidence            36778888877764    78999999999995           6999999999998765432111          01467


Q ss_pred             CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHHHh
Q 022496          246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY  285 (296)
Q Consensus       246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W  285 (296)
                      ++++||+||++|.||..++..|+.+||+||++|+|||.+|
T Consensus        81 ~~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          81 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             ccCceEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            8999999999999999999999999999999999999999

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=5.5e-21  Score=148.04  Aligned_cols=103  Identities=15%  Similarity=0.195  Sum_probs=85.1

Q ss_pred             cCCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccCCCCCCCcEEEEeCCC-hhHHHHH
Q 022496          186 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG-MRSLQVA  264 (296)
Q Consensus       186 ~~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~iv~~C~~G-~rs~~aa  264 (296)
                      ..++++++.+++++    ++..+||||++.||+.||||||+|+|+.+|......+...+++++.+|+||..| .|+..++
T Consensus         8 ~~I~~~el~~~~~~----~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~iv~~c~~~~~~~~~aa   83 (132)
T d1t3ka_           8 SYITSTQLLPLHRR----PNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTCA   83 (132)
T ss_dssp             EEECTTTTTTCCCC----TTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSSHHHHH
T ss_pred             CEECHHHHHHHHhC----CCeEEEEccCHHHHHhccCcccceeeeecccccccccccccccccceEEEeccccccchHHH
Confidence            55788888888876    368899999999999999999999999988776655556677889999999855 5776666


Q ss_pred             HHHH--------HcCCCceEEccchHHHhhhccCCC
Q 022496          265 QWLQ--------TQGFRRVFNVSGGIHAYATKVDPS  292 (296)
Q Consensus       265 ~~L~--------~~G~~~v~~l~GG~~~W~~~~~~~  292 (296)
                      ..|.        .+||+||++|+|||.+|..+..|.
T Consensus        84 ~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv  119 (132)
T d1t3ka_          84 RRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPV  119 (132)
T ss_dssp             HHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCc
Confidence            6554        359999999999999999887663

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=1.7e-20  Score=146.29  Aligned_cols=86  Identities=15%  Similarity=0.198  Sum_probs=70.4

Q ss_pred             CCcEEEecCChHHHH-----------hhCCCCceecccccccCCCCC---c----------------cCCCCCCCcEEEE
Q 022496          204 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPD---I----------------TVKFDPQKDTYVM  253 (296)
Q Consensus       204 ~~~~llDvR~~~ey~-----------~ghIpgA~~ip~~~l~~~~~~---~----------------~~~~~~~~~iv~~  253 (296)
                      ++.++||+|++.||.           .||||||+|+|+..+......   +                ...+..+++||+|
T Consensus        11 p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~y   90 (139)
T d1okga2          11 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVFS   90 (139)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEEE
T ss_pred             CCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEEE
Confidence            578999999999997           799999999999765422111   0                0134567899999


Q ss_pred             eCCChhHHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496          254 CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       254 C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  289 (296)
                      |.+|.||+.++..|+.+||+||++|+|||.+|.+..
T Consensus        91 C~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~  126 (139)
T d1okga2          91 CGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLF  126 (139)
T ss_dssp             CSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCC
Confidence            999999999999999999999999999999998643

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.7e-19  Score=141.97  Aligned_cols=100  Identities=19%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             CCHHHHHHHhcCCCCCCCcEEEecC----------ChHHHHhhCCCCceecccccccCCCCCccC---------------
Q 022496          188 IQPDELHKKMQDPNFHKEAQLIDVR----------EPEEVALSSLPGFQVLPLRQFGSWGPDITV---------------  242 (296)
Q Consensus       188 is~~ev~~~L~~~~~~~~~~llDvR----------~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~---------------  242 (296)
                      ++++.+.+.|.+    ++.++||+|          ...+|..||||||+|+|+..+.........               
T Consensus         5 Vs~~wL~~~L~~----~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~   80 (147)
T d1urha1           5 VGADWLAEHIDD----PEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMREL   80 (147)
T ss_dssp             ECHHHHHTTTTC----TTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHT
T ss_pred             CcHHHHHHHhCC----CCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHh
Confidence            678888888876    478999999          346899999999999999887654332211               


Q ss_pred             CCCCCCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          243 KFDPQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       243 ~~~~~~~iv~~C~~-G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ++.++++||+||.+ +..|..+++.|+.+||+||++|+||+.+|.++..|
T Consensus        81 Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~p  130 (147)
T d1urha1          81 GVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLL  130 (147)
T ss_dssp             TCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCC
T ss_pred             CcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCC
Confidence            46789999999975 56788999999999999999999999999987554

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=3.3e-19  Score=140.55  Aligned_cols=105  Identities=12%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecC--------ChHHHHhhCCCCceecccccccCCCCCcc---------------CC
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVR--------EPEEVALSSLPGFQVLPLRQFGSWGPDIT---------------VK  243 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR--------~~~ey~~ghIpgA~~ip~~~l~~~~~~~~---------------~~  243 (296)
                      -++++++.+.|+++..+++..+||+|        ...+|..||||||+|+|++.+........               .+
T Consensus         9 lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G   88 (149)
T d1rhsa1           9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLG   88 (149)
T ss_dssp             EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhhhh
Confidence            37899999999876555688999999        34789999999999999987654322111               14


Q ss_pred             CCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          244 FDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       244 ~~~~~~iv~~C~~---G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +.++++||+||..   +..|..+++.|+.+||+||++|+||+.+|.++..|
T Consensus        89 i~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~p  139 (149)
T d1rhsa1          89 ISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHP  139 (149)
T ss_dssp             CCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCC
T ss_pred             ccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCc
Confidence            5789999999974   56889999999999999999999999999987665

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=4.1e-19  Score=137.55  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=81.2

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCCccC---------------CCCCCCcEE
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV---------------KFDPQKDTY  251 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~---------------~~~~~~~iv  251 (296)
                      -++++++.+.|.+    ++.++||+|++.||..||||||+|+|+..+.........               ....+..+|
T Consensus        10 lIs~~el~~~l~~----~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (135)
T d1e0ca1          10 VIEPADLQARLSA----PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYV   85 (135)
T ss_dssp             EECHHHHHTTTTC----TTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEE
T ss_pred             EeeHHHHHHHhcC----CCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhcccccccccccc
Confidence            3689999998876    478999999999999999999999999887543211110               124566677


Q ss_pred             EEeC-CChhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          252 VMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       252 ~~C~-~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      +||. +|.++..+++.|+.+||+||++|+|||.+|..+..|
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p  126 (135)
T d1e0ca1          86 VYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP  126 (135)
T ss_dssp             EECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCC
T ss_pred             ccccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCC
Confidence            7765 778889999999999999999999999999987654

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=2.6e-19  Score=140.21  Aligned_cols=101  Identities=13%  Similarity=0.158  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCC-hHHHHhhCCCCceecccccccCCC--CCc---------cC--CCCCCCcEEE
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVRE-PEEVALSSLPGFQVLPLRQFGSWG--PDI---------TV--KFDPQKDTYV  252 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~-~~ey~~ghIpgA~~ip~~~l~~~~--~~~---------~~--~~~~~~~iv~  252 (296)
                      -++.+++.+.|.+    ++.++||+|. ..+|..||||||+|+|+.......  ..+         +.  ++.++++||+
T Consensus         8 lVs~~~l~~~l~~----~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVv   83 (143)
T d1uara1           8 LVSTDWVQEHLED----PKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL   83 (143)
T ss_dssp             EECHHHHHTTTTC----TTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cCcHHHHHHHhCC----CCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEE
Confidence            4788899988876    4789999995 678999999999999886532211  001         11  3578999999


Q ss_pred             EeCCCh-hHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          253 MCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       253 ~C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                      ||.+|. .|..+++.|+.+||+||++|+|||.+|..+..|
T Consensus        84 y~~~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p  123 (143)
T d1uara1          84 YGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRP  123 (143)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCC
T ss_pred             ecCCCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCC
Confidence            998775 677899999999999999999999999987554

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-18  Score=138.45  Aligned_cols=105  Identities=17%  Similarity=0.248  Sum_probs=80.7

Q ss_pred             hcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccC-CC--CCccCCCCCCCcEEEEeC-CCh
Q 022496          185 LQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-WG--PDITVKFDPQKDTYVMCH-HGM  258 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~-~~--~~~~~~~~~~~~iv~~C~-~G~  258 (296)
                      .+.|+++++.+++++...  .++.++||||++.||..||||||+|+|..+... ..  ........++..||+||. +|.
T Consensus        22 ~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~~l~~~~~~~~~~~~~~vV~yc~~s~~  101 (161)
T d1c25a_          22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSE  101 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTTSCCCCCTTSEEEEEEECSSSSS
T ss_pred             CCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHHHHhhhhhhhhhccCCeEEEEeccccc
Confidence            356899999999876421  246789999999999999999999999765321 10  011112245567999997 889


Q ss_pred             hHHHHHHHHHHc----------CCCceEEccchHHHhhhcc
Q 022496          259 RSLQVAQWLQTQ----------GFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       259 rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~~  289 (296)
                      ||..++..|+..          ||++|++|+||+.+|.+.-
T Consensus       102 rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~  142 (161)
T d1c25a_         102 RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKC  142 (161)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHC
Confidence            999999999864          9999999999999998653

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.7e-17  Score=133.89  Aligned_cols=104  Identities=15%  Similarity=0.267  Sum_probs=80.7

Q ss_pred             hcCCCHHHHHHHhcCCCC--CCCcEEEecCChHHHHhhCCCCceecccccccCC----CCCccCCCCCCCcEEEEeC-CC
Q 022496          185 LQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW----GPDITVKFDPQKDTYVMCH-HG  257 (296)
Q Consensus       185 ~~~is~~ev~~~L~~~~~--~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~----~~~~~~~~~~~~~iv~~C~-~G  257 (296)
                      ++.|+++++.++++++..  .+.+++||+|++.||..|||+||+|+|...+...    ........++.+.||+||. ++
T Consensus        22 ~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  101 (174)
T d1ymka1          22 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSS  101 (174)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTTTCCC----CEEEEEEECSSSS
T ss_pred             CcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHHHhhhhhhhhccCceEEEEeCCCC
Confidence            456999999999976422  1467899999999999999999999998875321    1111223456678999998 67


Q ss_pred             hhHHHHHHHHHHc----------CCCceEEccchHHHhhhc
Q 022496          258 MRSLQVAQWLQTQ----------GFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       258 ~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  288 (296)
                      .|+..+|..|+..          ||++|++|+||+.+|...
T Consensus       102 ~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1         102 ERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             SHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            8999999999854          999999999999999864

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.64  E-value=2.4e-16  Score=124.25  Aligned_cols=98  Identities=15%  Similarity=0.157  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecC--------ChHHHHhhCCCCceecccccccCCC-C------Ccc----------
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVR--------EPEEVALSSLPGFQVLPLRQFGSWG-P------DIT----------  241 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR--------~~~ey~~ghIpgA~~ip~~~l~~~~-~------~~~----------  241 (296)
                      -++++++.+.+.      +..+||+|        ...+|..||||||++++++...... .      .+.          
T Consensus         9 lvs~~~L~~~l~------d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~   82 (156)
T d1okga1           9 FLDPSEVADHLA------EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCM   82 (156)
T ss_dssp             EECHHHHTTCGG------GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHH
T ss_pred             EeCHHHHHHhcC------CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHH
Confidence            377788777663      57899999        4578999999999999876532211 0      011          


Q ss_pred             -CCCCCCCcEEEEeCC-C-hhHHHHHHHHHHcCCCceEEccchHHHhhhccCC
Q 022496          242 -VKFDPQKDTYVMCHH-G-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP  291 (296)
Q Consensus       242 -~~~~~~~~iv~~C~~-G-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~~  291 (296)
                       -+++.+++||+||.. | ..|.++++.|+.+|+ ||++|+||+.+|..+..|
T Consensus        83 ~lGI~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~p  134 (156)
T d1okga1          83 ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLE  134 (156)
T ss_dssp             HTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCC
T ss_pred             hccccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCC
Confidence             146789999999964 3 468899999999997 799999999999976554

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.5e-16  Score=118.93  Aligned_cols=100  Identities=15%  Similarity=0.069  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCCCCC--c-----------cCCCCCCCcEEEE
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD--I-----------TVKFDPQKDTYVM  253 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~--~-----------~~~~~~~~~iv~~  253 (296)
                      .|+++++.+++++.  +++..+||+|++.||..||||||+|||...+......  +           .......+.||+|
T Consensus         2 ~Is~~eL~~~l~~~--~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~y   79 (135)
T d2gwfa1           2 AITAKELYTMMTDK--NISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLL   79 (135)
T ss_dssp             EECHHHHHHHHHST--TSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEE
T ss_pred             eECHHHHHHHHhcC--CCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEE
Confidence            37899999999875  2468899999999999999999999999887543110  0           0123467889999


Q ss_pred             eCCCh-hH---HH----HHHHHH-----HcCCCceEEccchHHHhhhc
Q 022496          254 CHHGM-RS---LQ----VAQWLQ-----TQGFRRVFNVSGGIHAYATK  288 (296)
Q Consensus       254 C~~G~-rs---~~----aa~~L~-----~~G~~~v~~l~GG~~~W~~~  288 (296)
                      |..+. ++   ..    ....|.     ..|+.+|++|+||+.+|...
T Consensus        80 d~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          80 DWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             CSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             eCCCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            98654 22   11    222333     24778999999999999986

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-14  Score=112.72  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHhcCCCCCCCcEEEecCChHHHHhhCCCCceecccccccCC--------CCCccC---------CCCCCCc
Q 022496          187 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW--------GPDITV---------KFDPQKD  249 (296)
Q Consensus       187 ~is~~ev~~~L~~~~~~~~~~llDvR~~~ey~~ghIpgA~~ip~~~l~~~--------~~~~~~---------~~~~~~~  249 (296)
                      .++.+++.+.++.+  +++..+||+|++.||..||||||+|+|+..+...        ...+..         ....++.
T Consensus        17 ~~s~e~L~~~l~~~--~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (154)
T d1hzma_          17 SKTVAWLNEQLELG--NERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDT   94 (154)
T ss_dssp             BSCCCCHHHHHHHC--SSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSSC
T ss_pred             ccCHHHHHHHHhcC--CCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcHHHHHHHhhcCCCCe
Confidence            36677888888643  1478999999999999999999999997654210        001111         2245678


Q ss_pred             EEEEeCCCh----------hHHHHHHHHHHcCCCceEEccchHHHhhhcc
Q 022496          250 TYVMCHHGM----------RSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  289 (296)
Q Consensus       250 iv~~C~~G~----------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  289 (296)
                      ||+||..|.          +.......|...|+ +|++|+||+.+|.+.-
T Consensus        95 VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~y  143 (154)
T d1hzma_          95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAEF  143 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHHH
T ss_pred             EEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHHC
Confidence            999998643          22334444555565 7999999999998763

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.3e-11  Score=92.53  Aligned_cols=92  Identities=15%  Similarity=-0.006  Sum_probs=71.1

Q ss_pred             ccccccCCchhhhhcc-------------ccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccC
Q 022496            2 MLRASQLASPVLCAIT-------------QSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFT   67 (296)
Q Consensus         2 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~   67 (296)
                      -+|+|||+-+.++...             +.....++.+++.+..+...|..+ ++||.++ ++.+||+|||+..+++++
T Consensus        10 ~vr~~HILi~~~~~~~~~~~~~~~i~~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~-s~~~gG~lg~~~~~~l~~   88 (119)
T d1pina2          10 RVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCS-SAKARGDLGAFSRGQMQK   88 (119)
T ss_dssp             CEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSG-GGGGTTEEEEECTTSSCH
T ss_pred             EEEEEEEEEecCCCcCchhhhhhhhhhhHHHHHHHHHHHHHHHHcChhhHHHHHHHcCCCc-cccccccccccccchHHH
Confidence            3799999987664432             222334566777777777799999 9999775 889999999999999999


Q ss_pred             chhhcccccCCCCCCCCCCCceEEEeeEe
Q 022496           68 SPKAASFSSGTEGSSPGGGDREILVQHLL   96 (296)
Q Consensus        68 ~~e~~~~~~~~~~i~~~~~~~~~~~~~Il   96 (296)
                      +|+.+.|.+++|+||.|....  .-.||+
T Consensus        89 ~f~~~~~~l~~GeiS~pi~t~--~G~HIi  115 (119)
T d1pina2          89 PFEDASFALRTGEMSGPVFTD--SGIHII  115 (119)
T ss_dssp             HHHHHHHHCCTTCBCCCEECS--SCEEEE
T ss_pred             HHHHHHhcCCCCCcCCcEEeC--CcEEEE
Confidence            999999999999999985322  234554

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=2.9e-11  Score=90.73  Aligned_cols=82  Identities=9%  Similarity=-0.046  Sum_probs=65.9

Q ss_pred             cccccCCchhhhhccc-----------------cccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeeccc
Q 022496            3 LRASQLASPVLCAITQ-----------------SLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISR   64 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~   64 (296)
                      +|+|||+-+...+...                 .....++++++.+..+...|+.+ ++||+ ..++.+||+|||+..++
T Consensus         8 vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd-~~s~~~GG~lGw~~~~~   86 (120)
T d1j6ya_           8 VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSD-CSSAKRGGDLGSFGRGQ   86 (120)
T ss_dssp             CEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSC-HHHHHTCSEEEECSSSS
T ss_pred             EEEEEEEEccCcccchhhhccccccccccccHHHHHHHHHHHHHHHHcCcccHHHHHHHhCC-Ccccccccccccchhhh
Confidence            7999999776644332                 22344555666666676789999 99995 45789999999999999


Q ss_pred             ccCchhhcccccCCCCCCCCC
Q 022496           65 SFTSPKAASFSSGTEGSSPGG   85 (296)
Q Consensus        65 ~~~~~e~~~~~~~~~~i~~~~   85 (296)
                      +.++|+.+.|.+++|+||+|.
T Consensus        87 l~~~f~~~~~~l~~G~is~pi  107 (120)
T d1j6ya_          87 MQKPFEEATYALKVGDISDIV  107 (120)
T ss_dssp             SCTHHHHHHHHCCSSSCCSCE
T ss_pred             cChHHHHHHHcCCCCCcCCCE
Confidence            999999999999999999985

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=2.3e-10  Score=84.07  Aligned_cols=93  Identities=10%  Similarity=-0.096  Sum_probs=70.3

Q ss_pred             cccccCCchhhhhc-cccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCC
Q 022496            3 LRASQLASPVLCAI-TQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEG   80 (296)
Q Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~   80 (296)
                      +|++||+-++.... +......++++++.+..+...|..+ ++||+|+.++.+||++||+..+++.++|+.++|.+++|+
T Consensus         7 v~vrHILi~~~~~~~~~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~~~~~~~~l~~Ge   86 (108)
T d1m5ya3           7 VHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQ   86 (108)
T ss_dssp             EEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCCTTC
T ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCcCCccccccccccccccccccHHHHHHHHhCCCCC
Confidence            57899986654211 1122333455666566776799999 999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCceEEEeeE
Q 022496           81 SSPGG-GDREILVQHL   95 (296)
Q Consensus        81 i~~~~-~~~~~~~~~I   95 (296)
                      ||+|. .+.-||+-++
T Consensus        87 iS~pi~t~~G~hIikl  102 (108)
T d1m5ya3          87 MSAPVHSSFGWHLIEL  102 (108)
T ss_dssp             BCCCEECSSCEEEEEE
T ss_pred             CCccEEeCCEEEEEEE
Confidence            99983 3334544443

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=98.51  E-value=1e-08  Score=73.30  Aligned_cols=71  Identities=8%  Similarity=0.025  Sum_probs=57.4

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      ++++||+-.-        ....+++++.+..|. +|+.+ ++||+++  +.++|+|||+..+++.++|++++|.++.|+|
T Consensus         3 v~vrHIl~~~--------~~~a~~i~~~i~~g~-~F~~lA~~~S~d~--~~~~G~lG~~~~~~l~~ef~~a~f~l~~g~i   71 (96)
T d1eq3a_           3 VKVRHILCEK--------HGKIMEAMEKLKSGM-RFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQEAAFALPVSGM   71 (96)
T ss_dssp             EEEEEEEECC--------CSTHHHHHHHHTTTT-SHHHHHHHHCCCT--TTCCSEEEEESSCCSSSHHHHHHHHCCSCCS
T ss_pred             EEEEEEEECC--------HHHHHHHHHHHHCCC-CHHHHHHHhCcCc--cccccccceechHHhhHHHHHHHHhCCCCcC
Confidence            6789998632        123445666666665 89999 9999884  6788999999999999999999999999999


Q ss_pred             CCC
Q 022496           82 SPG   84 (296)
Q Consensus        82 ~~~   84 (296)
                      |++
T Consensus        72 s~~   74 (96)
T d1eq3a_          72 DKP   74 (96)
T ss_dssp             STT
T ss_pred             ccc
Confidence            975

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=4.6e-09  Score=74.55  Aligned_cols=80  Identities=4%  Similarity=-0.206  Sum_probs=60.6

Q ss_pred             cccccCCchhhhhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccCCCCC
Q 022496            3 LRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~i   81 (296)
                      +.|+||+-+..+.        ..++++.+..|. .|+.+ ++||+++ ++.+||+|||+..+.+.++|+.+.|.+++|+|
T Consensus         4 ~~a~HIlv~~~~~--------A~~i~~~l~~g~-~F~~lA~~~S~d~-s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G~v   73 (92)
T d1jnsa_           4 AAALHILVKEEKL--------ALDLLEQIKNGA-DFGKLAKKHSICP-SGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEP   73 (92)
T ss_dssp             EEEEEEEESSHHH--------HHHHHHHHHHTC-CHHHHHHHHHCST-TTTTGGGCCEEETTSSCHHHHHHHHHSCTTCC
T ss_pred             ceEEEEEeCCHHH--------HHHHHHHHHCCC-CHHHHHHHhCCCc-ccchhhhhceeeHhhhhhHHHHHHHhCCCCCc
Confidence            4588988653221        223444455664 79999 9999995 67899999999999999999999999999999


Q ss_pred             CCCC-CCceEEE
Q 022496           82 SPGG-GDREILV   92 (296)
Q Consensus        82 ~~~~-~~~~~~~   92 (296)
                      |+|. ...-+|+
T Consensus        74 s~pi~t~~G~HI   85 (92)
T d1jnsa_          74 TGPLHTQFGYHI   85 (92)
T ss_dssp             EEEEEETTEEEE
T ss_pred             CCCEEeCCeEEE
Confidence            9874 3333444

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1e-08  Score=74.32  Aligned_cols=91  Identities=8%  Similarity=-0.083  Sum_probs=70.3

Q ss_pred             cccccCCchhh----hhccccccccccccCCccccccCCchhH-HhhhhccCCCCCCCceeeeecccccCchhhcccccC
Q 022496            3 LRASQLASPVL----CAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSG   77 (296)
Q Consensus         3 ~~~~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~f~~l-~~~s~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~   77 (296)
                      +|.+||+-+++    ++.++......+++++.+..|. .|..+ ++||+++ ++.+||++||+....+.++++.+.+.++
T Consensus         3 ~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~~g~-~F~~la~~~S~~~-~~~~gG~lg~~~~~~l~~~~~~~i~~l~   80 (103)
T d2pv2a1           3 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGA-DFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAK   80 (103)
T ss_dssp             EEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHCCST-TGGGTTEEEEEEGGGSBHHHHHHHHTCC
T ss_pred             eEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHhccccccc-ccccccccccccccccchhhhhhhhhcC
Confidence            57889975543    4455555566677777776664 89999 9999885 7889999999999999999999999999


Q ss_pred             CCCCCCC-CCCceEEEeeE
Q 022496           78 TEGSSPG-GGDREILVQHL   95 (296)
Q Consensus        78 ~~~i~~~-~~~~~~~~~~I   95 (296)
                      +|+||+| ..+.-||+-++
T Consensus        81 ~G~is~pi~t~~G~hIikl   99 (103)
T d2pv2a1          81 KGDIVGPIRSGVGFHILKV   99 (103)
T ss_dssp             TTCEEEEEEETTEEEEEEE
T ss_pred             CCCCCCcEEECCEEEEEEE
Confidence            9999877 33344555433

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.68  E-value=0.11  Score=38.13  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      +..+.|+||++-..+..++..|...|+. +..|.||+.
T Consensus        34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~-~~~~H~~~~   70 (138)
T d1jr6a_          34 KGGRHLIFCHSKKKCDELAAKLVALGIN-AVAYYRGLD   70 (138)
T ss_dssp             TTSCEEEECSCHHHHHHHHHHHHHHTCE-EEEECTTCC
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHhccccc-hhhhhccch
Confidence            5678999999999999999999999994 888888864

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=86.13  E-value=0.19  Score=36.28  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=32.8

Q ss_pred             CCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccchHHHh
Q 022496          247 QKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAY  285 (296)
Q Consensus       247 ~~~iv~~C~~-G~rs~~aa~~L~~~G~~~v~~l~GG~~~W  285 (296)
                      +|+|+|+|.+ --||..|..+|+.++-.++.+..+|+..+
T Consensus         1 ~K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~~~   40 (137)
T d1jl3a_           1 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAH   40 (137)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSCC
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhCCCCeeecccccccc
Confidence            4789999984 47999999999998777888889998765

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.35  E-value=0.27  Score=40.55  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccchHH
Q 022496          246 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  283 (296)
Q Consensus       246 ~~~~iv~~C~~G~rs~~aa~~L~~~G~~~v~~l~GG~~  283 (296)
                      +..++||+|++-..+...+..|...|+ ++..+.||+.
T Consensus        35 kggk~LVFcnSR~~aE~La~~L~~~Gi-~a~~~Hggls   71 (299)
T d1a1va2          35 KGGRHLIFCHSKKKCDELAAKLVALGI-NAVAYYRGLD   71 (299)
T ss_dssp             HSSEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHHHCCC-CEEEEeCCch
Confidence            467899999999999999999999999 4777888754