Citrus Sinensis ID: 022545

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MGFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
ccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccEEEHHHccccccccccccccEEEcccccccEEEEEEEEccccHHHHHHcccccccHHHHHHHHHcccccEEEEEEccccHHHHHHHcccccccccccccccccccccHHHHHHHHHcccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccEEEcHHHHHcccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccEcHHHHHHHHHcccccccccEEEEEEEEccccccHHHccEEEEEccccccccccEEEEcccHHHHHHHHccccEEEcHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHccccccccccEcccHHHHHHHHHccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccEEEcHHHHHHccccccc
MGFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHfrlnidpkyndqqlratvslpkgtgkSVKVAVLAQGEKfneaknagadlvggdDLIEQIKGGFMefdkliaspDMMVKVASLgkilgprglmpnpkagtvttnIPQAIEEFKKGkveyradktgivhipfgkadfsedDLLINFLAAVKSIeankpkgakgvyWKSAYICSSMGPSIRLNIKEMLdyklpsnf
MGFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLrclsretgskrfleiqnlregkkeyDLKTAISLLKQMSSTKFTETAEAHFrlnidpkyndQQLRATvslpkgtgkSVKVAVLAQGEKfneaknagadlvgGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSieankpkgakgvyWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
MGFLDTCWRLLLLSKLILTWPLTMWRTIlrevlkeqlllllllfqlslrkarlRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
**FLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQ*****FTETAEAHFRLNIDPKYN***L**TV********SVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPN*KAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD*******
*GFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLR********************NLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY******
MGFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
*GFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGFLDTCWRLLLLSKLILTWPLTMWRTILREVLKEQLLLLLLLFQLSLRKARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q9LY66346 50S ribosomal protein L1, yes no 0.827 0.705 0.823 1e-117
Q9LE95352 50S ribosomal protein L1, N/A no 0.830 0.696 0.8 1e-113
B0JNQ5237 50S ribosomal protein L1 yes no 0.776 0.966 0.591 1e-77
Q3MA18238 50S ribosomal protein L1 yes no 0.776 0.962 0.595 2e-77
Q8YLJ7238 50S ribosomal protein L1 yes no 0.776 0.962 0.591 4e-77
Q8DM27237 50S ribosomal protein L1 yes no 0.776 0.966 0.578 3e-76
O78413234 50S ribosomal protein L1, yes no 0.766 0.965 0.599 7e-76
B7KIR7238 50S ribosomal protein L1 yes no 0.779 0.966 0.556 2e-75
Q31QK4237 50S ribosomal protein L1 yes no 0.776 0.966 0.578 3e-75
Q5N3N8237 50S ribosomal protein L1 yes no 0.776 0.966 0.573 7e-75
>sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/244 (82%), Positives = 222/244 (90%)

Query: 50  KARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDP 109
           KA L      T SKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDP
Sbjct: 101 KAALVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDP 160

Query: 110 KYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFD 169
           KYNDQQLRATVSLPKGTG++V VAVLAQGEK +EAK+AGAD+VG DDLIEQIKGGFMEFD
Sbjct: 161 KYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFD 220

Query: 170 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 229
           KLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVH
Sbjct: 221 KLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVH 280

Query: 230 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY 289
           IPFGK +F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+
Sbjct: 281 IPFGKVNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDF 340

Query: 290 KLPS 293
           K P+
Sbjct: 341 KPPT 344
This protein binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LE95|RK1_SPIOL 50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1 Back     alignment and function description
>sp|B0JNQ5|RL1_MICAN 50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q3MA18|RL1_ANAVT 50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q8YLJ7|RL1_NOSS1 50S ribosomal protein L1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q8DM27|RL1_THEEB 50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|O78413|RK1_GUITH 50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1 Back     alignment and function description
>sp|B7KIR7|RL1_CYAP7 50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q31QK4|RL1_SYNE7 50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q5N3N8|RL1_SYNP6 50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
449488819360 PREDICTED: 50S ribosomal protein L1, chl 0.830 0.680 0.853 1e-120
255553460360 50S ribosomal protein L1p, putative [Ric 0.820 0.672 0.839 1e-119
297736325343 unnamed protein product [Vitis vinifera] 0.796 0.685 0.872 1e-119
225450011347 PREDICTED: 50S ribosomal protein L1, chl 0.796 0.677 0.872 1e-119
224055100355 predicted protein [Populus trichocarpa] 0.830 0.690 0.853 1e-119
449436333360 PREDICTED: 50S ribosomal protein L1, chl 0.830 0.680 0.848 1e-118
118489924355 unknown [Populus trichocarpa x Populus d 0.830 0.690 0.848 1e-118
118486868355 unknown [Populus trichocarpa] 0.830 0.690 0.836 1e-117
224106139329 predicted protein [Populus trichocarpa] 0.830 0.744 0.836 1e-117
449464018356 PREDICTED: 50S ribosomal protein L1, chl 0.789 0.654 0.858 1e-117
>gi|449488819|ref|XP_004158181.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/245 (85%), Positives = 225/245 (91%)

Query: 50  KARLRCLSRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDP 109
           KA L      T SKRFLEIQ LRE K EYDLKTAISLLKQ SSTKF ETAEAHFRLNIDP
Sbjct: 114 KAALPLKRDRTRSKRFLEIQKLRETKMEYDLKTAISLLKQTSSTKFVETAEAHFRLNIDP 173

Query: 110 KYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFD 169
           KYNDQQLRATV+LPKGTG++VKVAVL QGEKF+EAKNAGADLVGG+DLIEQIKGGFMEFD
Sbjct: 174 KYNDQQLRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADLVGGEDLIEQIKGGFMEFD 233

Query: 170 KLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVH 229
           KLIASPDMM KVASLGK+LGPRGLMPNPKAGTVTTNIPQAI EFK+GKVEYRADKTGIVH
Sbjct: 234 KLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTNIPQAIAEFKQGKVEYRADKTGIVH 293

Query: 230 IPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDY 289
           +PFGKADFSEDDLL+N L+A+KS+E NKP GAKGVYWKSA+ICSSMGPSIRLN +EMLDY
Sbjct: 294 LPFGKADFSEDDLLVNLLSAIKSVEVNKPTGAKGVYWKSAHICSSMGPSIRLNTREMLDY 353

Query: 290 KLPSN 294
           K+PS+
Sbjct: 354 KIPSS 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255553460|ref|XP_002517771.1| 50S ribosomal protein L1p, putative [Ricinus communis] gi|223543043|gb|EEF44578.1| 50S ribosomal protein L1p, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297736325|emb|CBI24963.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450011|ref|XP_002274498.1| PREDICTED: 50S ribosomal protein L1, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055100|ref|XP_002298416.1| predicted protein [Populus trichocarpa] gi|222845674|gb|EEE83221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436333|ref|XP_004135947.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|118489924|gb|ABK96759.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|118486868|gb|ABK95268.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106139|ref|XP_002314057.1| predicted protein [Populus trichocarpa] gi|222850465|gb|EEE88012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449464018|ref|XP_004149726.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] gi|449532743|ref|XP_004173340.1| PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:2087388346 EMB3126 "EMBRYO DEFECTIVE 3126 0.806 0.687 0.836 3.2e-104
TIGR_CMR|CJE_0525233 CJE_0525 "ribosomal protein L1 0.776 0.982 0.489 8.6e-56
UNIPROTKB|Q06797232 rplA "50S ribosomal protein L1 0.745 0.948 0.477 4.8e-55
TIGR_CMR|CHY_2322231 CHY_2322 "ribosomal protein L1 0.745 0.952 0.495 7e-54
TIGR_CMR|BA_0098230 BA_0098 "ribosomal protein L1" 0.759 0.973 0.459 3.8e-53
TIGR_CMR|DET_0992237 DET_0992 "ribosomal protein L1 0.762 0.949 0.471 2.1e-52
TIGR_CMR|SPO_3513232 SPO_3513 "ribosomal protein L1 0.711 0.905 0.480 9.2e-52
TIGR_CMR|GSU_2866234 GSU_2866 "ribosomal protein L1 0.715 0.901 0.497 1.9e-51
TIGR_CMR|CBU_0227232 CBU_0227 "ribosomal protein L1 0.701 0.892 0.487 4.6e-50
TIGR_CMR|SO_0221233 SO_0221 "ribosomal protein L1" 0.749 0.948 0.470 7.4e-50
TAIR|locus:2087388 EMB3126 "EMBRYO DEFECTIVE 3126" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 200/239 (83%), Positives = 222/239 (92%)

Query:    56 LSRE-TGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQ 114
             L R+ T SKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQ
Sbjct:   106 LKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQ 165

Query:   115 QLRATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIAS 174
             QLRATVSLPKGTG++V VAVLAQGEK +EAK+AGAD+VG DDLIEQIKGGFMEFDKLIAS
Sbjct:   166 QLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIAS 225

Query:   175 PDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGK 234
             PDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK
Sbjct:   226 PDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGK 285

Query:   235 ADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPS 293
              +F+E+DLLINFLAAVKS+E NKPKGAKGVYWKSA+ICSSMGPSI+LNI+EM+D+K P+
Sbjct:   286 VNFTEEDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005840 "ribosome" evidence=ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
TIGR_CMR|CJE_0525 CJE_0525 "ribosomal protein L1" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q06797 rplA "50S ribosomal protein L1" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2322 CHY_2322 "ribosomal protein L1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0098 BA_0098 "ribosomal protein L1" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0992 DET_0992 "ribosomal protein L1" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3513 SPO_3513 "ribosomal protein L1" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2866 GSU_2866 "ribosomal protein L1" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0227 CBU_0227 "ribosomal protein L1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0221 SO_0221 "ribosomal protein L1" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2II81RL1_ANADENo assigned EC number0.54970.71520.9017yesno
Q9LY66RK1_ARATHNo assigned EC number0.82370.82710.7052yesno
B7KIR7RL1_CYAP7No assigned EC number0.55650.77960.9663yesno
Q8YLJ7RL1_NOSS1No assigned EC number0.59130.77620.9621yesno
Q7U3T7RL1_SYNPXNo assigned EC number0.59240.71520.8978yesno
A3PAS1RL1_PROM0No assigned EC number0.60090.70500.8851yesno
O78413RK1_GUITHNo assigned EC number0.59910.76610.9658yesno
B1XJH1RL1_SYNP2No assigned EC number0.57270.72200.8949yesno
Q8DM27RL1_THEEBNo assigned EC number0.57820.77620.9662yesno
Q5N3N8RL1_SYNP6No assigned EC number0.57390.77620.9662yesno
B0CAD0RL1_ACAM1No assigned EC number0.57390.77620.9703yesno
Q9LE95RK1_SPIOLNo assigned EC number0.80.83050.6960N/Ano
Q31QK4RL1_SYNE7No assigned EC number0.57820.77620.9662yesno
Q7V382RL1_PROMPNo assigned EC number0.59610.70500.8851yesno
A2C033RL1_PROM1No assigned EC number0.58330.73220.9191yesno
Q119S7RL1_TRIEINo assigned EC number0.56080.77620.9621yesno
Q31CX8RL1_PROM9No assigned EC number0.59610.70500.8851yesno
B0JNQ5RL1_MICANNo assigned EC number0.59130.77620.9662yesno
Q2JTQ5RL1_SYNJANo assigned EC number0.56460.76940.9618yesno
B7JWT7RL1_CYAP8No assigned EC number0.57820.77960.9663yesno
A2CDE8RL1_PROM3No assigned EC number0.62130.69830.8765yesno
B8JB73RL1_ANAD2No assigned EC number0.54970.71520.9017yesno
Q46HH0RL1_PROMTNo assigned EC number0.58330.73220.9191yesno
Q7V478RL1_PROMMNo assigned EC number0.62130.69830.8765yesno
A8G2L0RL1_PROM2No assigned EC number0.60090.70500.8851yesno
Q0I6K8RL1_SYNS3No assigned EC number0.59150.72200.9063yesno
A2BUI0RL1_PROM5No assigned EC number0.59610.70500.8851yesno
Q7NK78RL1_GLOVINo assigned EC number0.55210.77960.9663yesno
A5GPD4RL1_SYNPWNo assigned EC number0.58590.76610.9617yesno
A7HCI0RL1_ANADFNo assigned EC number0.53550.71520.9017yesno
A5GWK1RL1_SYNR3No assigned EC number0.58590.76610.9617yesno
A9BDG6RL1_PROM4No assigned EC number0.55940.76610.9658yesno
A0T0C1RK1_PHATCNo assigned EC number0.55330.69830.8956yesno
Q7VDY6RL1_PROMANo assigned EC number0.60.72880.9188yesno
Q2JM50RL1_SYNJBNo assigned EC number0.55550.77620.9703yesno
Q3MA18RL1_ANAVTNo assigned EC number0.59560.77620.9621yesno
A2BNZ8RL1_PROMSNo assigned EC number0.60570.70500.8851yesno
B4UDT5RL1_ANASKNo assigned EC number0.54970.71520.9017yesno
Q3AGT0RL1_SYNSCNo assigned EC number0.61650.69830.8765yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028715001
RecName- Full=Ribosomal protein L1; (347 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000483001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (145 aa)
• ••• • 0.993
GSVIVG00019749001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)
• ••• • 0.988
GSVIVG00035271001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)
•  •• • 0.987
GSVIVG00022142001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)
•  •• • 0.986
GSVIVG00026943001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)
• ••• • 0.984
GSVIVG00029480001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (226 aa)
•  •• • 0.984
GSVIVG00019333001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (155 aa)
•  •• • 0.980
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
• ••• • 0.978
GSVIVG00026031001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)
•  •• • 0.976
GSVIVG00023012001
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)
•  •• • 0.974

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
CHL00129229 CHL00129, rpl1, ribosomal protein L1; Reviewed 1e-131
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 1e-129
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 1e-116
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 1e-102
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 1e-74
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 1e-67
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 1e-32
TIGR01170141 TIGR01170, rplA_mito, ribosomal protein L1, mitoch 1e-24
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 2e-10
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed Back     alignment and domain information 
 Score =  371 bits (954), Expect = e-131
 Identities = 142/226 (62%), Positives = 181/226 (80%), Gaps = 1/226 (0%)

Query: 62  SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
           S+R  E+++  E KK Y  + AI+LLK+ ++ KF ETAEAH  LNIDPKY DQQLR TV+
Sbjct: 5   SRRTKELRSKIE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVT 63

Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
           LPKGTGK++++AVL   EK  EAKNAGAD+VG DDLIE+I  G ++FD LIA+PDMM K+
Sbjct: 64  LPKGTGKTIRIAVLTNEEKITEAKNAGADIVGSDDLIEEITKGNLDFDLLIATPDMMPKL 123

Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
           A LG++LGPRGLMP+PK+GTVTT++  AI EFKKGK+EYRADKTGIVH+ FGK++F+E+D
Sbjct: 124 AKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHVLFGKSNFTEED 183

Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 287
           LL N  A  +SIE N+P G KG YWKS YICS+MGPSI+++I  + 
Sbjct: 184 LLENLQAIYESIEQNRPSGVKGKYWKSFYICSTMGPSIQIDISLLR 229

Length = 229
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|233298 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial Back     alignment and domain information
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 100.0
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 99.95
KOG1685343 consensus Uncharacterized conserved protein [Funct 99.72
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 96.71
PTZ00029216 60S ribosomal protein L10a; Provisional 85.31
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-71  Score=496.04  Aligned_cols=225  Identities=52%  Similarity=0.866  Sum_probs=220.9

Q ss_pred             cccchhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEcCc
Q 022545           59 ETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQG  138 (295)
Q Consensus        59 ~~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~  138 (295)
                      .|++|+++++.+..+..+.|++.|||+++++.+.++|+||||++++|++|+++++|++||+|.|||++|+..||||||++
T Consensus         2 ~k~~k~~~~~~~~~d~~~~~~i~eai~~~ke~~~~kF~etVevav~L~vD~~k~dq~vrg~VvLP~g~gk~vrV~Vfa~g   81 (228)
T COG0081           2 AKKSKRYRAASEKVDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLKVDPRKPDQRVRGSVVLPNGTGKTVRVAVFADG   81 (228)
T ss_pred             chhHHHHHHHHHhhhhhhhhhHHHHHHHHHhccccCcceEEEEEEEcccCCCCcccccceeEECCCCCCCccEEEEEcCh
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHcCCCccccHHHHHHHHcC-cccccEEEeCccchHHhHhhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCe
Q 022545          139 EKFNEAKNAGADLVGGDDLIEQIKGG-FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGK  217 (295)
Q Consensus       139 ~~~eeAk~aGAd~VG~~eLi~kIk~g-~~~fD~~lAt~d~m~~l~~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~  217 (295)
                      +.+++|++||||+||++||+++|+++ |.+||+|||||||||.++.||++||||||||||++||++.|+.++|+++++|+
T Consensus        82 ~~~~~A~~AGad~Vg~edl~e~ik~~r~~~fD~~IAtpdmM~~v~~LG~vLGPRGlMP~Pk~gTvt~Dv~~av~~~K~g~  161 (228)
T COG0081          82 EKAEEAKAAGADYVGGEDLIELIKNGRAKDFDVFIATPDMMPLVGKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGT  161 (228)
T ss_pred             HhHHHHHHcCCCEecHHHHHHHHhCcchhcCCEEEECchHHHHHHHHhhhcCCCCCCCCCCCCCCCcCHHHHHHHHhcCc
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeec
Q 022545          218 VEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI  283 (295)
Q Consensus       218 v~~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~  283 (295)
                      ++||+|+.|++|++||+++|++|+|.||+.++++.|.+.+|.+.++.||+++||||||||+++|+.
T Consensus       162 v~~R~dk~g~ih~~iGk~sf~~e~L~eNi~a~l~~i~~~~p~~~kg~~ik~v~vstTMGP~v~v~~  227 (228)
T COG0081         162 VEFRADKAGVIHVPIGKVSFDDEKLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMGPGVKVDL  227 (228)
T ss_pred             EEEEECCCceEEEEecCCCCCHHHHHHHHHHHHHHHHHhCcCCcccceEeEEEEecCCCCCEEecc
Confidence            999999999999999999999999999999999999999999999999999999999999999986

>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3bbo_D352 Homology Model For The Spinach Chloroplast 50s Subu 1e-113
2hgj_C229 Fitting Of Components With Known Structure Into An 1e-61
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 1e-61
3umy_A228 Crystal Structure Of Mutant Ribosomal Protein T217a 2e-61
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 2e-61
4f9t_A229 Ribosomal Protein L1 From Thermus Thermophilus With 2e-61
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 2e-61
487d_H224 Seven Ribosomal Proteins Fitted To A Cryo-Electron 4e-61
3u42_A229 Mutant Ribosomal Protein L1 From Thermus Thermophil 4e-61
1ad2_A228 Ribosomal Protein L1 Mutant With Serine 179 Replace 5e-61
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 3e-60
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 3e-60
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 7e-60
2hw8_A228 Structure Of Ribosomal Protein L1-Mrna Complex At 2 3e-59
1zho_A228 The Structure Of A Ribosomal Protein L1 In Complex 4e-59
2rdo_9233 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 9e-51
3fik_5234 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 9e-51
2gya_2222 Structure Of The 50s Subunit Of A Pre-Translocation 2e-50
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-49
2ov7_A137 The First Domain Of The Ribosomal Protein L1 From T 4e-16
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 7e-16
1dwu_A213 Ribosomal Protein L1 Length = 213 7e-15
2zkr_5212 Structure Of A Mammalian Ribosomal 60s Subunit With 1e-10
1cjs_A219 Crystal Structure Of Ribosomal Protein L1 From Meth 4e-10
1mzp_A217 Structure Of The L1 Protuberance In The Ribosome Le 7e-09
1u63_A219 The Structure Of A Ribosomal Protein L1-Mrna Comple 4e-08
3e1b_Z213 Structure Of The 50s Subunit Of E. Coli Ribosome In 2e-06
1s1i_A217 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 5e-04
2noq_G213 Structure Of Ribosome-Bound Cricket Paralysis Virus 5e-04
>pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/238 (81%), Positives = 215/238 (90%)
Query: 57  SRETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQL 116
           S  T SKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQL
Sbjct: 114 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQL 173
Query: 117 RATVSLPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPD 176
           RATVSLPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ D
Sbjct: 174 RATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSD 233
Query: 177 MMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKAD 236
           MM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +
Sbjct: 234 MMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 293
Query: 237 FSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 294
           F E+DLLIN  A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN
Sbjct: 294 FEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1 In Complex With 80nt 23s Rna From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With Substitution Thr217ala Length = 229 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 Back     alignment and structure
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With Threonine 217 Replaced By Valine Length = 229 Back     alignment and structure
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 Back     alignment and structure
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 Back     alignment and structure
>pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 233 Back     alignment and structure
>pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 234 Back     alignment and structure
>pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 222 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure
>pdb|1DWU|A Chain A, Ribosomal Protein L1 Length = 213 Back     alignment and structure
>pdb|2ZKR|5 Chain 5, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 212 Back     alignment and structure
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Methanococcus Jannaschii Length = 219 Back     alignment and structure
>pdb|1MZP|A Chain A, Structure Of The L1 Protuberance In The Ribosome Length = 217 Back     alignment and structure
>pdb|1U63|A Chain A, The Structure Of A Ribosomal Protein L1-Mrna Complex Length = 219 Back     alignment and structure
>pdb|3E1B|Z Chain Z, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 213 Back     alignment and structure
>pdb|1S1I|A Chain A, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 217 Back     alignment and structure
>pdb|2NOQ|G Chain G, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 213 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 1e-127
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 1e-120
4f9t_A229 50S ribosomal protein L1; rossman fold, RNA; HET: 1e-120
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 1e-118
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 2e-94
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 3e-88
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 2e-86
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 3e-86
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 3e-78
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 3e-75
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 5e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 Back     alignment and structure
 Score =  364 bits (935), Expect = e-127
 Identities = 191/233 (81%), Positives = 213/233 (91%)

Query: 62  SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVS 121
           SKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVS
Sbjct: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178

Query: 122 LPKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKV 181
           LPKGTGK+VK+AVLAQG+K +EAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KV
Sbjct: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238

Query: 182 ASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
           ASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+D
Sbjct: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298

Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 294
           LLIN  A +KS+E NKP GAKGVYWKSA+I SSMGPSIRLNI+EMLDYK PSN
Sbjct: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 351
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Back     alignment and structure
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C ... Length = 229 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 189 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 100.0
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 100.0
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
Probab=100.00  E-value=3e-72  Score=509.79  Aligned_cols=227  Identities=48%  Similarity=0.841  Sum_probs=216.2

Q ss_pred             cccchhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEcCc
Q 022545           59 ETGSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQG  138 (295)
Q Consensus        59 ~~~~k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~  138 (295)
                      .|++|||+++.+.++..+.|++.|||+++|+.+.++|+||||++++|++|++++++++||+|.|||++|++.+|||||++
T Consensus         2 ~k~~k~~~~~~~~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~   81 (229)
T 3u42_A            2 PKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKG   81 (229)
T ss_dssp             -------CCGGGSSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCT
T ss_pred             CcccHHHHHHHhccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecCh
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHcCCCccccHHHHHHHHcCcccccEEEeCccchHHhH-hhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCe
Q 022545          139 EKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGK  217 (295)
Q Consensus       139 ~~~eeAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~d~m~~l~-~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~  217 (295)
                      +++++|++||||+||++||+++|++|+.+||+|||||||||.|+ .|||+||||||||||+.|||++|+.++|+++++|+
T Consensus        82 ~~~~eAk~aGAd~vG~~dLi~kIk~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~  161 (229)
T 3u42_A           82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGR  161 (229)
T ss_dssp             HHHHHHHHTTCSEEECTHHHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTE
T ss_pred             HhHHHHHhcCCceeCcHHHHHHHhcCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCce
Confidence            99999999999999999999999999999999999999999997 79999999999999999999999999999999999


Q ss_pred             EEEEEcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeeccc
Q 022545          218 VEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE  285 (295)
Q Consensus       218 v~~r~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~  285 (295)
                      ++||.|+.|++|++||+++|++|||.||+.+++++|.+.+|.+++|.||+++|||||||||++||.++
T Consensus       162 v~~r~dk~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~id~~s  229 (229)
T 3u42_A          162 IEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS  229 (229)
T ss_dssp             EEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEBCTTC
T ss_pred             EEEEeCCCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEeCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998763
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 7e-75
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 5e-45
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 2e-42
d1thma_279 c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar 0.002
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

 Score =  226 bits (578), Expect = 7e-75
 Identities = 109/223 (48%), Positives = 158/223 (70%), Gaps = 1/223 (0%)

Query: 63  KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSL 122
           KR+  +    +  K Y +  A  L+K++++ KF ET E H +L IDP+ +DQ +R TVSL
Sbjct: 1   KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60

Query: 123 PKGTGKSVKVAVLAQGEKFNEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA 182
           P G GK V+V  +A+GEK  EA+ AGAD VGG+++I++I  G+M+FD ++A+PD+M  V 
Sbjct: 61  PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120

Query: 183 S-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDD 241
           S LG+ILGPRGL+PNPKAGTV  NI + I E K G++E+R DKTG +H P GKA F  + 
Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180

Query: 242 LLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 284
           L  N  A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N  
Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPH 223
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-66  Score=467.84  Aligned_cols=223  Identities=48%  Similarity=0.856  Sum_probs=216.6

Q ss_pred             hhHHHHHhhccCCCCCCHHHHHHHHHhhccCCCCCcEEEEEEeCcCCCCCCccceeeeecCCCCCCceEEEEEcCcccHH
Q 022545           63 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFN  142 (295)
Q Consensus        63 k~~~~~~~~~~~~~~y~l~eAI~~lk~~~~~~F~EsVel~i~L~id~kk~~~~irg~V~LPh~~gk~~kV~Vfa~~~~~e  142 (295)
                      |||+++.+..+..+.|++.|||+.+|+.+.++|+||||++++|++|++++++++||+|.|||+.++..+|||||++++++
T Consensus         1 kr~~~~~~~~d~~k~ysi~EAi~~lk~~~~~kF~esvel~i~L~~~~~k~~~~i~g~v~LP~~~~k~~ki~v~~~~e~~~   80 (224)
T d1ad2a_           1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIK   80 (224)
T ss_dssp             CCCTTTTTSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHH
T ss_pred             CchHHHhhccCccCCcCHHHHHHHHHHcCCCCCCceEEEEEEEcccccccccccceeEEeccccccceeEEEecchHHHH
Confidence            57778888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCccccHHHHHHHHcCcccccEEEeCccchHHhH-hhchhccCCCCCCCCCCCCCCCCHHHHHHHHhcCeEEEE
Q 022545          143 EAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYR  221 (295)
Q Consensus       143 eAk~aGAd~VG~~eLi~kIk~g~~~fD~~lAt~d~m~~l~-~LgriLGPrGlMP~pk~GTvt~di~~~I~~~k~G~v~~r  221 (295)
                      +|+++||++||++|++++|++|+.+||+|||+|++||.++ .|||+||||||||+|+.||+++|+.++|+++++|+++||
T Consensus        81 ~Ak~aGa~~vg~~eli~ki~~~~~~fd~~ia~~~~m~~v~~~lgriLGprGlMP~pk~Gtv~~di~~~v~~~k~g~v~~r  160 (224)
T d1ad2a_          81 EAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFR  160 (224)
T ss_dssp             HHHHTTCSEEECGGGHHHHHTTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTEEEEE
T ss_pred             HHHhcCccccCcHHHHHHHhcCCccchhHHhHHHHHHHHHHhhhhccCcccCCCCCCCCCcchhHHHHHHHHhCCeEEEe
Confidence            9999999999999999999999999999999999999996 799999999999999999999999999999999999999


Q ss_pred             EcCCCeeeEeeeCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeEEEEeCCCCCcEEeeccc
Q 022545          222 ADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE  285 (295)
Q Consensus       222 ~dk~g~i~v~IGk~sm~~e~L~ENi~avl~~I~~~~p~~~kg~~Ik~i~IssTmGp~i~I~~~~  285 (295)
                      +++.|++|++||+++|++|||.||+.+++++|.+++|++++|.||+++|||||||||++|+.++
T Consensus       161 ~~k~g~i~~~IG~~~m~~e~i~eNi~~~i~~i~~~~p~~~k~~~ik~v~l~sTmGp~~~id~~s  224 (224)
T d1ad2a_         161 NDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS  224 (224)
T ss_dssp             CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEEEECTTSCCEEECTTC
T ss_pred             eCCCceeeeeeccccCCHHHHHHHHHHHHHHHHHhCccccCCCeEeEEEEECCCCCCEEeCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998763
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure