Citrus Sinensis ID: 022546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccccHHHccccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
HHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkldplvsslslydiantpgvaadvshinspaqvegyageeqlgkalegsdvviipagvprkpgmtrddlfnINAGIVKSLCTAIANYCPHALVnmisnpvnstvPIAAEVFKkagtydekklfgVTTLDVVRAKtfyagkvnvpvaevnvpvigghagvtilplfsqatpksnnlsdEEIKALTKRTQDGGTEVVeakagkgsatLSMAYAGAVFADAClmglngvpdivectfvqssvtelpffaskvrlgkngadevlglgplsdyekqgLESLKPELKASIEKGIQFANRS
Flexible Loop (DISEMBL)
MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKkagtydekklfgvtTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLfsqatpksnnlsDEEIKALTkrtqdggtevveakagkgsaTLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKpelkasiekgiqfanrs
Low Complexity Region (SEG)
MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKvnvpvaevnvpvIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS
Disordered region (IsUnstruct)
*********LSLYDIANTPGVAADVSHI*******GYA****LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFS*************************************ATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLG*******************************
Disordered Region (DISOPRED)
****PLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN**
Disordered Region (DISEMBL)
MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS
Disordered Region (DISPRO)
MK*DPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
P17783	347	Malate dehydrogenase, mit	N/A	no	0.989	0.841	0.877	1e-149
P83373	339	Malate dehydrogenase, mit	N/A	no	0.996	0.867	0.854	1e-147
Q9ZP06	341	Malate dehydrogenase 1, m	yes	no	0.993	0.859	0.840	1e-146
Q9LKA3	341	Malate dehydrogenase 2, m	no	no	0.993	0.859	0.836	1e-143
P46487	347	Malate dehydrogenase, mit	N/A	no	0.993	0.844	0.854	1e-138
Q43744	341	Malate dehydrogenase, mit	N/A	no	0.993	0.859	0.806	1e-138
Q42686	373	Malate dehydrogenase, mit	N/A	no	0.976	0.772	0.707	1e-115
Q42972	356	Malate dehydrogenase, gly	no	no	0.993	0.823	0.683	1e-112
P46488	356	Malate dehydrogenase, gly	N/A	no	0.983	0.814	0.680	1e-110
O82399	354	Probable malate dehydroge	no	no	0.993	0.827	0.676	1e-110

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  526 bits (1356), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/293 (87%), Positives = 277/293 (94%), Gaps = 1/293 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVS L+LYDIA TPGVAADV H+N+ ++V GY GEEQLGKALEGSDVVIIPAGVP
Sbjct: 54  MKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVP 113

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVKSLCTAIA YCP+AL+NMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 114 RKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVNSTVPIAAEVFKKAGTYDE 173

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK NVPVAEVNVPVIGGHAG+TILPLFSQATP++ NLSD+ 
Sbjct: 174 KKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITILPLFSQATPRA-NLSDDT 232

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD+VEC+FVQS+V
Sbjct: 233 IVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTV 292

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           TELPFFASKV+LGKNG + VL LGPLSD+EK+GLE LKPELKASIEKGIQFAN
Sbjct: 293 TELPFFASKVKLGKNGVESVLDLGPLSDFEKEGLEKLKPELKASIEKGIQFAN 345

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  521 bits (1342), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/295 (85%), Positives = 278/295 (94%), Gaps = 1/295 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVS LSLYDIA TPGVAADVSHIN+ ++V+GYAGEEQLG+ALEG DVVIIPAGVP
Sbjct: 46  MKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVP 105

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIV+SL  AIA YCPHA++NMISNPVNSTVPIA+EV KKAG YDE
Sbjct: 106 RKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDE 165

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK  VPVAEVNVPV+GGHAG+TILPLFSQATPK+ NLSD+ 
Sbjct: 166 KKLFGVTTLDVVRAKTFYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKA-NLSDDY 224

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD+VEC++VQSS+
Sbjct: 225 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSI 284

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
           TELPFFASKVRLGKNG +EVL LGPLSD+EK+GL+ LKPELK+SIEKGI+FAN+S
Sbjct: 285 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLKQLKPELKSSIEKGIKFANQS 339

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  517 bits (1331), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/294 (84%), Positives = 278/294 (94%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIANTPGVAADV HIN+ ++V GY G++ L KALEG+D+VIIPAGVP
Sbjct: 49  MKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVP 108

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+LCTAIA YCPHAL+NMISNPVNSTVPIAAE+FKKAG YDE
Sbjct: 109 RKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDE 168

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRA+TFYAGK NVPVAEVNVPVIGGHAGVTILPLFSQATP++ NLS + 
Sbjct: 169 KKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQA-NLSSDI 227

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           + ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD++EC++VQS++
Sbjct: 228 LTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTI 287

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELPFFASKVRLGKNG +EVL LGPLSD+EK+GLE+LKPELK+SIEKG++FAN+
Sbjct: 288 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  509 bits (1310), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/294 (83%), Positives = 277/294 (94%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIANTPGVAADV HIN+ +QV GY G++ LGKALEG+D+VIIPAGVP
Sbjct: 49  MKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVP 108

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+L  AIA YCP ALVNMISNPVNSTVPIAAE+FKKAGTYDE
Sbjct: 109 RKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDE 168

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRA+TFYAGK +V VAEVNVPV+GGHAG+TILPLFSQA+P++ NLSD+ 
Sbjct: 169 KKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQA-NLSDDL 227

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I+ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVP++VEC+FVQS++
Sbjct: 228 IRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTI 287

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELPFFASKVRLGKNG +EVL LGPLSD+EK+GLE+LK ELK+SIEKGI+FAN+
Sbjct: 288 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1

 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/295 (85%), Positives = 276/295 (93%), Gaps = 2/295 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVS L+LYDIA TPGVAADV HIN+ ++V GY GEEQLG+ALEGSDVVIIPAGVP
Sbjct: 54  MKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVP 113

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVKSLCTAIA YCP+A+VNMISNPVNSTVPIAAE+FKKAGTY+E
Sbjct: 114 RKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNE 173

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKL GVTTLDVVRAKTFYAGK  VPV EVNVPV+GGHAG+TILPLFSQA PK+ NL+DE+
Sbjct: 174 KKLLGVTTLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKA-NLADED 232

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSS- 239
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD+VEC+FVQSS 
Sbjct: 233 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSI 292

Query: 240 VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           +TELPFFASKV+LGKNG +EVL LGP+SDYEKQGLE L PELKASIEKGI+FAN+
Sbjct: 293 ITELPFFASKVKLGKNGVEEVLELGPMSDYEKQGLEILIPELKASIEKGIKFANQ 347

Eucalyptus gunnii (taxid: 3933)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1

 Score =  489 bits (1259), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/294 (80%), Positives = 268/294 (91%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIANTPGVAADV HIN+ +QV GY G++ L KALEG+D+VIIPAGVP
Sbjct: 49  MKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVP 108

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+L +AIA YCPHALVNMISNPVNSTVPIAAE+FKKAG YDE
Sbjct: 109 RKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDE 168

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVR KT YAGK NVPVAEVNVP I GHAGVTILPLFSQATP++  LS + 
Sbjct: 169 KKLFGVTTLDVVRVKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQA-ILSGDA 227

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           +   TKRTQDGGTEV EAKAGKGSATLSMAYAGA+FADACL GLNGVPD+VEC++VQS++
Sbjct: 228 LTVTTKRTQDGGTEVEEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSYVQSTI 287

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELPFFASKVRLGKNG +EVL LGPLSD+EK+GLE+L+P +K++IEKG++FAN+
Sbjct: 288 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALRPGIKSTIEKGVKFANQ 341

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42686|MDHM_CHLRE Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/291 (70%), Positives = 246/291 (84%), Gaps = 3/291 (1%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++  VSSLSLYDIA TPGVAADVSHIN+ AQV+G+  ++ L +AL G D+VIIPAGVP
Sbjct: 82  MKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVP 140

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLF INAGIV+ L TA+  +CP A++N+ISNPVNSTVPIAAE  KK G YD+
Sbjct: 141 RKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPVNSTVPIAAEQLKKMGVYDK 200

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           +K+ GVTTLDVVRAKTFYA K  + VA V+VPV+GGHAGVTILPLFSQATPK+  +S E 
Sbjct: 201 RKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVTILPLFSQATPKA-TMSAEV 259

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           + ALTKRTQDGGTEVV+AKAGKGSATLSMAYA A+FAD+CL GLNG P +VECT+V+S+V
Sbjct: 260 LDALTKRTQDGGTEVVQAKAGKGSATLSMAYAAALFADSCLRGLNGAP-VVECTYVESTV 318

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           T+ P+FASKV+L   G D++  LGPLSDYEK GL+++ PEL ASIEKG+QF
Sbjct: 319 TDAPYFASKVKLSTEGVDKIHDLGPLSDYEKAGLKAMMPELLASIEKGVQF 369

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/294 (68%), Positives = 234/294 (79%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYD+ NTPGV AD+SH+N+ A V G+ G+ QL  AL G D+VIIPAGVP
Sbjct: 64  MKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 123

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIV++LC  IA  CP+A+VN+ISNPVNSTVPIAAEVFKKAGTYD 
Sbjct: 124 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDP 183

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+L GVTTLDVVRA TF A  + +   +VNVPVIGGHAGVTILPL SQ  P   + + EE
Sbjct: 184 KRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPC-SFTSEE 242

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I  LT R Q+GGTEVVEAKAG GSATLSMAYA + FADACL GL G   IVEC+FV S V
Sbjct: 243 ISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQV 302

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELPFFASKVRLG+ G +E+L LGPL+++E+ GLE  K EL  SI+KG+ F N+
Sbjct: 303 TELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/291 (68%), Positives = 229/291 (78%), Gaps = 1/291 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL +AL G D+V+IPAGVP
Sbjct: 64  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVP 123

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLF INAGIVK+LC  IA  CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD 
Sbjct: 124 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDP 183

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+L GVT LDVVRA TF A  + +   +VNVPV+GGHAGVTILPL SQ  P S + + EE
Sbjct: 184 KRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPS-SFTQEE 242

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL GL G   +VEC FV S V
Sbjct: 243 INYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQV 302

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           TELPFFA+KVRLG+NG DEV  LGPL++YE+ GLE  K EL  SIEKG+ F
Sbjct: 303 TELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/294 (67%), Positives = 232/294 (78%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYD+AN PGV AD+SH+++ A V G+ G+ QL +AL G D+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIV++L  AIA  CP A+VN+ISNPVNSTVPIAAEVFKKAGT+D 
Sbjct: 122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKL GVT LDVVRA TF A  +++   EV VPV+GGHAGVTILPL SQ  P   + + +E
Sbjct: 182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPC-SFTQKE 240

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL GL G  +IVEC +V S V
Sbjct: 241 IEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHV 300

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELPFFASKVRLG+ G DEV GLGPL++YE+ GLE  K EL  SI KG+ FA +
Sbjct: 301 TELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
255563084	343	malate dehydrogenase, putative [Ricinus	1.0	0.860	0.911	1e-154
224079115	348	predicted protein [Populus trichocarpa]	1.0	0.847	0.891	1e-153
115438875	340	Os01g0649100 [Oryza sativa Japonica Grou	0.993	0.861	0.877	1e-149
225443845	352	PREDICTED: malate dehydrogenase, mitocho	1.0	0.838	0.875	1e-148
242053811	340	hypothetical protein SORBIDRAFT_03g02957	1.0	0.867	0.877	1e-148
356517066	345	PREDICTED: malate dehydrogenase, mitocho	0.993	0.849	0.877	1e-148
226497656	340	uncharacterized protein LOC100272900 [Ze	0.993	0.861	0.883	1e-148
414881197	410	TPA: malate dehydrogenase [Zea mays]	0.993	0.714	0.883	1e-148
115465579	340	Os05g0574400 [Oryza sativa Japonica Grou	0.993	0.861	0.883	1e-148
255634854	345	unknown [Glycine max]	0.993	0.849	0.874	1e-148

>gi|255563084|ref|XP_002522546.1| malate dehydrogenase, putative [Ricinus communis] gi|223538237|gb|EEF39846.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/295 (91%), Positives = 283/295 (95%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIANTPGVAADVSHINS AQV GYAGEEQLG+ALEGSD+VIIPAGVP
Sbjct: 49  MKLNPLVSSLSLYDIANTPGVAADVSHINSRAQVSGYAGEEQLGQALEGSDIVIIPAGVP 108

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVKSLCTAIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 109 RKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 168

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFY GK  V VAEV+VPV+GGHAG+TILPLFSQATPKSN LS+E+
Sbjct: 169 KKLFGVTTLDVVRAKTFYGGKAKVAVAEVDVPVVGGHAGITILPLFSQATPKSNGLSNED 228

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPDIVEC+FVQSSV
Sbjct: 229 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDIVECSFVQSSV 288

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
           TELPFFASKVRLGKNG +EVL LGPLSDYEKQGLESL PELKASIEKG++FAN+S
Sbjct: 289 TELPFFASKVRLGKNGVEEVLDLGPLSDYEKQGLESLIPELKASIEKGVKFANQS 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079115|ref|XP_002305754.1| predicted protein [Populus trichocarpa] gi|222848718|gb|EEE86265.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/295 (89%), Positives = 285/295 (96%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PL+SSLSLYDIANTPGV ADVSHINS AQV GYAGEEQLG+AL+GSD+VIIPAGVP
Sbjct: 54  MKLNPLISSLSLYDIANTPGVGADVSHINSRAQVAGYAGEEQLGEALDGSDIVIIPAGVP 113

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLF INAGIVKSLCTAIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGT+DE
Sbjct: 114 RKPGMTRDDLFKINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTFDE 173

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           +KLFGVTTLDVVRAKTFYAGKV VPVAEVNVPV+GGHAG+TILPLFSQA PKS+NLSD++
Sbjct: 174 RKLFGVTTLDVVRAKTFYAGKVKVPVAEVNVPVVGGHAGITILPLFSQAAPKSSNLSDDD 233

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPDIVEC+FVQSS+
Sbjct: 234 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDIVECSFVQSSI 293

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
           T+LPFFASKVRLGKNG +EV GLGPLSDYE+QGLESLKPELKASIEKG++FAN++
Sbjct: 294 TDLPFFASKVRLGKNGVEEVFGLGPLSDYEQQGLESLKPELKASIEKGVEFANQN 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115438875|ref|NP_001043717.1| Os01g0649100 [Oryza sativa Japonica Group] gi|19880701|gb|AAM00435.1|AF444195_1 malate dehydrogenase [Oryza sativa] gi|14164433|dbj|BAB55686.1| putative malate dehydrogenase [Oryza sativa Japonica Group] gi|21328039|dbj|BAC00625.1| putative mitochondrial malate dehydrogenase [Oryza sativa Japonica Group] gi|113533248|dbj|BAF05631.1| Os01g0649100 [Oryza sativa Japonica Group] gi|125527066|gb|EAY75180.1| hypothetical protein OsI_03070 [Oryza sativa Indica Group] gi|125571386|gb|EAZ12901.1| hypothetical protein OsJ_02822 [Oryza sativa Japonica Group] gi|215740786|dbj|BAG96942.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/293 (87%), Positives = 282/293 (96%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHIN+PAQV+G+ G++QLG+ALEGSD+VIIPAGVP
Sbjct: 47  MKLNPLVSSLSLYDIAGTPGVAADVSHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGVP 106

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+LCTAIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 107 RKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 166

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK NVPV +VNVPV+GGHAG+TILPLFSQATP +N LSDE+
Sbjct: 167 KKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGITILPLFSQATPATNALSDED 226

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA+ACL GLNGVPD+VEC+FVQS+V
Sbjct: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFANACLKGLNGVPDVVECSFVQSTV 286

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           TELPFFASKV+LGKNG +EVLGLG LSD+EK+GLE+LK ELKASIEKGI+FAN
Sbjct: 287 TELPFFASKVKLGKNGVEEVLGLGQLSDFEKEGLENLKGELKASIEKGIKFAN 339

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443845|ref|XP_002275442.1| PREDICTED: malate dehydrogenase, mitochondrial [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/296 (87%), Positives = 281/296 (94%), Gaps = 1/296 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHIN+ +QV GY G++QLG+ALEG+D+VIIPAGVP
Sbjct: 57  MKLNPLVSSLSLYDIAGTPGVAADVSHINTRSQVAGYMGDDQLGQALEGADLVIIPAGVP 116

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVKSLCTAIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 117 RKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 176

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK  VPVAE NVPV+GGHAG+TILPLFSQATPKSNNLSDE+
Sbjct: 177 KKLFGVTTLDVVRAKTFYAGKAKVPVAEANVPVVGGHAGITILPLFSQATPKSNNLSDED 236

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPD+VEC+FVQS++
Sbjct: 237 IVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTI 296

Query: 241 T-ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
             +LP+FASKV+LGKNG +EVLGLGPLSDYEKQGLESLK ELKASIEKGI+FA +S
Sbjct: 297 VPDLPYFASKVKLGKNGVEEVLGLGPLSDYEKQGLESLKHELKASIEKGIKFATQS 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242053811|ref|XP_002456051.1| hypothetical protein SORBIDRAFT_03g029570 [Sorghum bicolor] gi|241928026|gb|EES01171.1| hypothetical protein SORBIDRAFT_03g029570 [Sorghum bicolor]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/295 (87%), Positives = 280/295 (94%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHINSPA V+G+ GEEQLG+ALEGSDVVIIPAGVP
Sbjct: 46  MKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFMGEEQLGEALEGSDVVIIPAGVP 105

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+L  AIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 106 RKPGMTRDDLFNINAGIVKNLSAAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 165

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK N+PV +VNVPV+GGHAG+TILPLFSQATP +N+LSDE+
Sbjct: 166 KKLFGVTTLDVVRAKTFYAGKANLPVTDVNVPVVGGHAGITILPLFSQATPATNSLSDED 225

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPDIVEC+FVQS+V
Sbjct: 226 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDIVECSFVQSTV 285

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
           TELPFFASKVRLGKNG +EVLGLG LSD+EK+GLE LK ELK+SIEKGI+FAN +
Sbjct: 286 TELPFFASKVRLGKNGVEEVLGLGELSDFEKEGLEKLKSELKSSIEKGIKFANEN 340

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517066|ref|XP_003527211.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Glycine max]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/294 (87%), Positives = 282/294 (95%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHIN+ ++V GY G+E+LGKALEG+DVVIIPAGVP
Sbjct: 53  MKLNPLVSSLSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVP 112

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+LCTAIA YCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 113 RKPGMTRDDLFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 172

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+LFGVTTLDVVRAKTFYAGK NVPVA VNVPV+GGHAG+TILPLFSQATPK+ NL D+ 
Sbjct: 173 KRLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKA-NLDDDV 231

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD+VEC+FVQS+V
Sbjct: 232 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTV 291

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELP+FASKVRLGKNG +EVLGLGPLSD+E+QGLESLKPELK+SIEKGI+FAN+
Sbjct: 292 TELPYFASKVRLGKNGVEEVLGLGPLSDFEQQGLESLKPELKSSIEKGIKFANQ 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497656|ref|NP_001140825.1| uncharacterized protein LOC100272900 [Zea mays] gi|194701300|gb|ACF84734.1| unknown [Zea mays]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/293 (88%), Positives = 279/293 (95%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHINSPA V+G+ G+EQLG+ALEGSDVVIIPAGVP
Sbjct: 46  MKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFMGDEQLGEALEGSDVVIIPAGVP 105

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+L TAIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 106 RKPGMTRDDLFNINAGIVKNLSTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 165

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK N+PV +VNVPV+GGHAG+TILPLFSQATP +N LSDE+
Sbjct: 166 KKLFGVTTLDVVRAKTFYAGKANLPVTDVNVPVVGGHAGITILPLFSQATPATNALSDED 225

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPDIVEC+FVQS+V
Sbjct: 226 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDIVECSFVQSTV 285

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           TELPFFASKVRLGKNG +EVLGLG LSD+EK+GLE LK ELK+SIEKGI+FAN
Sbjct: 286 TELPFFASKVRLGKNGVEEVLGLGELSDFEKEGLEKLKSELKSSIEKGIKFAN 338

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414881197|tpg|DAA58328.1| TPA: malate dehydrogenase [Zea mays]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/293 (88%), Positives = 279/293 (95%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHINSPA V+G+ G+EQLG+ALEGSDVVIIPAGVP
Sbjct: 116 MKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFMGDEQLGEALEGSDVVIIPAGVP 175

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+L TAIA YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 176 RKPGMTRDDLFNINAGIVKNLSTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 235

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK N+PV +VNVPV+GGHAG+TILPLFSQATP +N LSDE+
Sbjct: 236 KKLFGVTTLDVVRAKTFYAGKANLPVTDVNVPVVGGHAGITILPLFSQATPATNALSDED 295

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPDIVEC+FVQS+V
Sbjct: 296 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDIVECSFVQSTV 355

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           TELPFFASKVRLGKNG +EVLGLG LSD+EK+GLE LK ELK+SIEKGI+FAN
Sbjct: 356 TELPFFASKVRLGKNGVEEVLGLGELSDFEKEGLEKLKSELKSSIEKGIKFAN 408

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115465579|ref|NP_001056389.1| Os05g0574400 [Oryza sativa Japonica Group] gi|50080249|gb|AAT69584.1| putative malate dehydrogenase [Oryza sativa Japonica Group] gi|52353548|gb|AAU44114.1| putative malate dehydrogenase [Oryza sativa Japonica Group] gi|113579940|dbj|BAF18303.1| Os05g0574400 [Oryza sativa Japonica Group] gi|125553415|gb|EAY99124.1| hypothetical protein OsI_21084 [Oryza sativa Indica Group] gi|222632646|gb|EEE64778.1| hypothetical protein OsJ_19634 [Oryza sativa Japonica Group]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/293 (88%), Positives = 279/293 (95%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHINSPA V+G+ GEEQLG+ALEGSDVVIIPAGVP
Sbjct: 46  MKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVP 105

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK LCTAI+ YCP+ALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 106 RKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDE 165

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRAKTFYAGK NVPV EVNVPV+GGHAG+TILPLFSQATP SN LS E+
Sbjct: 166 KKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGITILPLFSQATPASNALSHED 225

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL GLNGVPD+VEC+FVQS+V
Sbjct: 226 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTV 285

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           TELPFFASKVRLGKNG +EVLGLG LS++EK+GLE+LK ELK+SIEKGI+FA+
Sbjct: 286 TELPFFASKVRLGKNGVEEVLGLGQLSEFEKEGLENLKGELKSSIEKGIKFAH 338

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634854|gb|ACU17786.1| unknown [Glycine max]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/294 (87%), Positives = 282/294 (95%), Gaps = 1/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MKL+PLVSSLSLYDIA TPGVAADVSHIN+ ++V GY G+E+LGKALEG+DVVIIPAGVP
Sbjct: 53  MKLNPLVSSLSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVP 112

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIV++LCTAIA YCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE
Sbjct: 113 RKPGMTRDDLFNINAGIVETLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 172

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+LFGVTTLDVVRAKTFYAGK NVPVA VNVPV+GGHAG+TILPLFSQATPK+ NL D+ 
Sbjct: 173 KRLFGVTTLDVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKA-NLDDDV 231

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD+VEC+FVQS+V
Sbjct: 232 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTV 291

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           TELP+FASKVRLGKNG +EVLGLGPLSD+E+QGLESLKPELK+SIEKGI+FAN+
Sbjct: 292 TELPYFASKVRLGKNGVEEVLGLGPLSDFEQQGLESLKPELKSSIEKGIKFANQ 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.993	0.859	0.802	8.9e-125
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.993	0.859	0.806	6.3e-124
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.993	0.827	0.659	2.2e-96
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.993	0.727	0.608	6.5e-90
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.989	0.869	0.593	2.3e-87
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.986	0.863	0.558	9.4e-82
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.983	0.857	0.567	1.5e-81
UNIPROTKB|Q5NVR2	338	MDH2 "Malate dehydrogenase, mi	0.983	0.857	0.567	2.5e-81
UNIPROTKB|P40926	338	MDH2 "Malate dehydrogenase, mi	0.983	0.857	0.567	3.2e-81
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.983	0.857	0.563	3.2e-81

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 236/294 (80%), Positives = 267/294 (90%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             MKL+PLVSSLSLYDIANTPGVAADV HIN+ ++V GY G++ L KALEG+D+VIIPAGVP
Sbjct:    49 MKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVP 108

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFNINAGIVK+LCTAIA YCPHAL+NMISNPVNSTVPIAAE+FKKAG YDE
Sbjct:   109 RKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDE 168

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
             KKLFGVTTLDVVRA+TFYAGK            IGGHAGVTILPLFSQATP++N LS + 
Sbjct:   169 KKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQAN-LSSDI 227

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             + ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVPD++EC++VQS++
Sbjct:   228 LTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTI 287

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
             TELPFFASKVRLGKNG +EVL LGPLSD+EK+GLE+LKPELK+SIEKG++FAN+
Sbjct:   288 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 237/294 (80%), Positives = 267/294 (90%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             MKL+PLVSSLSLYDIANTPGVAADV HIN+ +QV GY G++ LGKALEG+D+VIIPAGVP
Sbjct:    49 MKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVP 108

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFNINAGIVK+L  AIA YCP ALVNMISNPVNSTVPIAAE+FKKAGTYDE
Sbjct:   109 RKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDE 168

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
             KKLFGVTTLDVVRA+TFYAGK            +GGHAG+TILPLFSQA+P++N LSD+ 
Sbjct:   169 KKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQAN-LSDDL 227

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             I+ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA+FADACL GLNGVP++VEC+FVQS++
Sbjct:   228 IRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTI 287

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
             TELPFFASKVRLGKNG +EVL LGPLSD+EK+GLE+LK ELK+SIEKGI+FAN+
Sbjct:   288 TELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAELKSSIEKGIKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 194/294 (65%), Positives = 224/294 (76%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             MK++PLVS L LYD+AN PGV AD+SH+++ A V G+ G+ QL +AL G D+VIIPAGVP
Sbjct:    62 MKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVP 121

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFNINAGIV++L  AIA  CP A+VN+ISNPVNSTVPIAAEVFKKAGT+D 
Sbjct:   122 RKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDP 181

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
             KKL GVT LDVVRA TF A              +GGHAGVTILPL SQ  P  +  + +E
Sbjct:   182 KKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCS-FTQKE 240

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL GL G  +IVEC +V S V
Sbjct:   241 IEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHV 300

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
             TELPFFASKVRLG+ G DEV GLGPL++YE+ GLE  K EL  SI KG+ FA +
Sbjct:   301 TELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 180/296 (60%), Positives = 226/296 (76%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K+ PLVS+L LYDIAN  GVAAD+SH N+P+QV  + G  +L   L+  +VV+IPAGVP
Sbjct:   102 IKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVP 161

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFNINA IVK+L  A+A  CP+A +++ISNPVNSTVPIAAEV KK G YD 
Sbjct:   162 RKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDP 221

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
             KKLFGVTTLDVVRA TF + K            IGGHAG+TILPL S+  P S N +DEE
Sbjct:   222 KKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKP-SVNFTDEE 280

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             I+ LT R Q+ GTEVV+AKAG GSATLSMAYA A F ++ L  L+G  D+ EC+FV+S++
Sbjct:   281 IQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESTL 340

Query:   241 TELPFFASKVRLGKNGADEVL--GLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
             T+LPFFAS+V++GKNG + V+   L  L++YE++ LE+LK ELKASI+KG+ FAN+
Sbjct:   341 TDLPFFASRVKIGKNGLEAVIESDLQGLTEYEQKALEALKVELKASIDKGVAFANK 396

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 174/293 (59%), Positives = 221/293 (75%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K +PLV+ L+LYDI +TPGVAAD+SHI++ ++  G+ G +QLG +L+GSDVV+IPAGVP
Sbjct:    44 LKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVP 103

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFN+NAGI+K +  +IA  CP ALV +I+NPVN+ VPIAAE+ KKAG YD 
Sbjct:   104 RKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDP 163

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
             K+LFGV+TLDVVRA+ F                IGGH+GVTILP+ SQ+ P      D  
Sbjct:   164 KRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGGHSGVTILPVLSQSQPLFKGNQDT- 222

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             I+ LT R Q+ GTEVV+AKAG GSATLSMAYAGA FA + L GLNG  +++EC++VQS+V
Sbjct:   223 IEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTV 282

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
             TE  FF++ + LGKNG  E LGL  L+DYEK+ LE+  PELK +I+KGI FAN
Sbjct:   283 TEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDFAN 335

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 163/292 (55%), Positives = 213/292 (72%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+G+ G EQL + L+G DVV+IPAGVP
Sbjct:    43 LKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGFLGPEQLPECLKGCDVVVIPAGVP 102

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFN NA IV +L TA A +CP A++ +ISNPVNST+PI +EVFKK G Y+ 
Sbjct:   103 RKPGMTRDDLFNTNASIVATLTTACAKHCPEAMICIISNPVNSTIPITSEVFKKHGVYNP 162

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
              ++FGVTTLD+VRA TF A              IGGHAG TI+PL SQ TPK +    ++
Sbjct:   163 NRIFGVTTLDIVRANTFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVD-FPQDQ 221

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             ++ LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   ++EC+FV+S  
Sbjct:   222 LEKLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVRSEE 281

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA 292
             TE P+F++ + LGKNG ++ LG+G ++ +E++ +     ELKASI+KG  FA
Sbjct:   282 TESPYFSTPLLLGKNGIEKNLGIGKITPFEEKMVAEAMAELKASIKKGEDFA 333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 165/291 (56%), Positives = 210/291 (72%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct:    44 LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 103

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFN NA IV +L  A A +CP A++ +ISNPVNST+PIA EVFKK G YD 
Sbjct:   104 RKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYDP 163

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
              K+FGVTTLD+VRA TF A              IGGHAG TI+PL SQ TPK + L  ++
Sbjct:   164 NKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVD-LPQDQ 222

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             + A+T R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct:   223 LTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 282

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
              +  +F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG +F
Sbjct:   283 ADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEF 333

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5NVR2 MDH2 "Malate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 165/291 (56%), Positives = 210/291 (72%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct:    44 LKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVP 103

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFN NA IV +L +A A +CP A++ +I+NPVNST+PI AEVFKK G Y+ 
Sbjct:   104 RKPGMTRDDLFNTNATIVATLTSACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNP 163

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
              K+FGVTTLD+VRA TF A              IGGHAG TI+PL SQ TPK +    ++
Sbjct:   164 NKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVD-FPQDQ 222

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct:   223 LTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 282

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
             TE  +F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG  F
Sbjct:   283 TECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDF 333

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

UNIPROTKB|P40926 MDH2 "Malate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 165/291 (56%), Positives = 209/291 (71%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct:    44 LKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVP 103

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFN NA IV +L  A A +CP A++ +I+NPVNST+PI AEVFKK G Y+ 
Sbjct:   104 RKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNP 163

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
              K+FGVTTLD+VRA TF A              IGGHAG TI+PL SQ TPK +    ++
Sbjct:   164 NKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVD-FPQDQ 222

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct:   223 LTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 282

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
             TE  +F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG  F
Sbjct:   283 TECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDF 333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0006734 "NADH metabolic process" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IDA;IMP

GO:0030060 "L-malate dehydrogenase activity" evidence=EXP;IDA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0006475 "internal protein amino acid acetylation" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 164/291 (56%), Positives = 209/291 (71%)

Query:     1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct:    44 LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 103

Query:    61 RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
             RKPGMTRDDLFN NA IV +L  A A +CP A++ +ISNPVNST+PI AEVFKK G Y+ 
Sbjct:   104 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNP 163

Query:   121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
              K+FGVTTLD+VRA  F A              IGGHAG TI+PL SQ TPK +    ++
Sbjct:   164 NKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVD-FPQDQ 222

Query:   181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct:   223 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 282

Query:   241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
             T+ P+F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG +F
Sbjct:   283 TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEF 333

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.8061	0.9932	0.8592	N/A	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.6598	0.9932	0.8184	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5876	0.9830	0.8579	yes	no
Q7X3X5	MDH_MORS2	1, ., 1, ., 1, ., 3, 7	0.5486	0.9627	0.9102	N/A	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.5659	0.9627	0.9131	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5876	0.9830	0.8579	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.8542	0.9932	0.8443	N/A	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.8542	0.9966	0.8672	N/A	no
Q9LKA3	MDHM2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8367	0.9932	0.8592	no	no
Q0I491	MDH_HAES1	1, ., 1, ., 1, ., 3, 7	0.5793	0.9661	0.9163	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.6804	0.9830	0.8146	N/A	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.8771	0.9898	0.8414	N/A	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.5704	0.9728	0.9198	yes	no
A1S3C4	MDH_SHEAM	1, ., 1, ., 1, ., 3, 7	0.5659	0.9627	0.9131	yes	no
Q9ZP06	MDHM1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8401	0.9932	0.8592	yes	no
B8F5K4	MDH_HAEPS	1, ., 1, ., 1, ., 3, 7	0.5704	0.9728	0.9140	yes	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5724	0.9694	0.9196	yes	no
Q5U907	MDH_ACTSZ	1, ., 1, ., 1, ., 3, 7	0.5312	0.9593	0.9070	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5841	0.9830	0.8579	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.5729	0.9593	0.9129	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.6632	0.9932	0.8184	N/A	no
A5UCQ1	MDH_HAEIE	1, ., 1, ., 1, ., 3, 7	0.5724	0.9661	0.9163	yes	no
Q4QL89	MDH_HAEI8	1, ., 1, ., 1, ., 3, 7	0.5689	0.9661	0.9163	yes	no
A8H0U0	MDH_SHEPA	1, ., 1, ., 1, ., 3, 7	0.5555	0.9627	0.9131	yes	no
Q8DEC2	MDH_VIBVU	1, ., 1, ., 1, ., 3, 7	0.5694	0.9593	0.9129	yes	no
B0TUH8	MDH_SHEHH	1, ., 1, ., 1, ., 3, 7	0.5590	0.9627	0.9131	yes	no
P44427	MDH_HAEIN	1, ., 1, ., 1, ., 3, 7	0.5724	0.9661	0.9163	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5586	0.9694	0.9166	yes	no
B1KGG7	MDH_SHEWM	1, ., 1, ., 1, ., 3, 7	0.5486	0.9627	0.9131	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5582	0.9796	0.8475	yes	no
B8CSY7	MDH_SHEPW	1, ., 1, ., 1, ., 3, 7	0.5555	0.9627	0.9131	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5876	0.9830	0.8579	yes	no
Q6AW21	MDH_MORJA	1, ., 1, ., 1, ., 3, 7	0.5520	0.9627	0.9102	N/A	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5841	0.9830	0.8579	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.6701	0.9830	0.8146	N/A	no
A5UIX3	MDH_HAEIG	1, ., 1, ., 1, ., 3, 7	0.5758	0.9661	0.9163	yes	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.7079	0.9762	0.7721	N/A	no
A0L113	MDH_SHESA	1, ., 1, ., 1, ., 3, 7	0.5590	0.9627	0.9131	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5807	0.9830	0.8579	yes	no
Q9CN86	MDH_PASMU	1, ., 1, ., 1, ., 3, 7	0.5807	0.9694	0.9196	yes	no
P48364	MDH_MORS5	1, ., 1, ., 1, ., 3, 7	0.5520	0.9627	0.9102	N/A	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5655	0.9694	0.9196	yes	no
B0UUR6	MDH_HAES2	1, ., 1, ., 1, ., 3, 7	0.5793	0.9661	0.9163	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5620	0.9694	0.9196	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5807	0.9830	0.8579	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_IV000431	malate dehydrogenase (EC-1.1.1.37) (348 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XIV2957	citrate synthase (EC-2.3.3.1) (512 aa)						•	•		0.767
	estExt_Genewise1_v1.C_LG_XVI2794	citrate synthase (EC-2.3.3.1) (509 aa)						•	•		0.766
	estExt_fgenesh4_pm.C_1480010	citrate synthase (EC-2.3.3.1) (478 aa)				•	•	•	•		0.754
	grail3.0001123001	hypothetical protein (75 aa)							•		0.685
	eugene3.00080776	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (402 aa)							•		0.518
	grail3.0154005402	phosphoglycerate kinase (EC-2.7.7.2 2.7.2.3) (402 aa)							•		0.517
	estExt_fgenesh4_pm.C_LG_VIII0335	phosphoglycerate kinase (481 aa)							•		0.509
	estExt_fgenesh4_pg.C_LG_VIII1790	RecName- Full=Glutamine synthetase; EC=6.3.1.2; (432 aa)							•		0.508
	estExt_Genewise1_v1.C_LG_X4165	glutamine synthetase (432 aa)							•		0.508
	estExt_fgenesh4_pm.C_LG_X0655	phosphoglycerate kinase (481 aa)							•		0.508

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-137
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-134
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-126
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	4e-77
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	2e-52
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	8e-47
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	1e-46
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-44
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	5e-32
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	7e-32
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	1e-29
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	2e-27
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	6e-25
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	7e-23
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-21
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	5e-20
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	5e-20
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-16
cd00704	323	cd00704, MDH, Malate dehydrogenase	8e-16
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	3e-13
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	2e-12
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	4e-12
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	5e-12
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	1e-11
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	7e-11
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	7e-11
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	1e-10
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	2e-10
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	2e-08
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	2e-05
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	0.001

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  585 bits (1510), Expect = 0.0
 Identities = 225/287 (78%), Positives = 257/287 (89%), Gaps = 1/287 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYDIANTPGVAADVSHIN+PAQV G+ G++QLG AL+G+D+VIIPAGVP
Sbjct: 38  MKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIVK+LC A+A +CP+ALVN+ISNPVNSTVPIAAEV KKAG YD 
Sbjct: 98  RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDP 157

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           KKLFGVTTLDVVRA TF A K  +  A+V+VPV+GGHAG+TILPL SQATPK  + +DEE
Sbjct: 158 KKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKV-SFTDEE 216

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I+ALTKR Q+GGTEVVEAKAG GSATLSMAYA A FADACL GLNG  D+VEC++VQS V
Sbjct: 217 IEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYVQSEV 276

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           TELPFFASKVRLG+NG +EVLGLGPLS+YE++GLE+LKPELKASIEK
Sbjct: 277 TELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  513 bits (1325), Expect = 0.0
 Identities = 199/292 (68%), Positives = 234/292 (80%), Gaps = 1/292 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +KL+PLVS L+LYDI NTPGVAAD+SHIN+PA+V GY G E+L KAL+G+DVV+IPAGVP
Sbjct: 20  LKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFNINAGIV+ L TA+A  CP AL+ +ISNPVNSTVPIAAEV KKAG YD 
Sbjct: 80  RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDP 139

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+LFGVTTLDVVRA TF A  + +  A+VNVPVIGGH+GVTILPL SQ  P       EE
Sbjct: 140 KRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPPF-TFDQEE 198

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I+ALT R Q GG EVV+AKAG GSATLSMAYAGA FA++ L GL G   ++EC +V+S V
Sbjct: 199 IEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESDV 258

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA 292
           TE PFFA+ V LGKNG ++ LGLG L+DYEK+ LE+  PELK +IEKG+ F 
Sbjct: 259 TEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  388 bits (1000), Expect = e-137
 Identities = 159/290 (54%), Positives = 197/290 (67%), Gaps = 4/290 (1%)

Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S LSLYDIA  TPGVA D+SHI +  +++G++GE+    ALEG+DVV+I AGV RKP
Sbjct: 25  PAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED-PTPALEGADVVLISAGVARKP 83

Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DLFN+NAGIVK+L   +A  CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84  GMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143

Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
           FGVTTLDV+R++TF A        EV VPVIGGH+GVTILPL SQ    S   +++E+  
Sbjct: 144 FGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201

Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
           LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +  L G   +VEC +V+      
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGKYA 261

Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
            FFA  V LGKNG +E L +G LS +E+  LE +   LK  I  G +F N
Sbjct: 262 RFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVN 311

Length = 312

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  381 bits (981), Expect = e-134
 Identities = 174/294 (59%), Positives = 217/294 (73%), Gaps = 2/294 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +KL P VS LSLYDIA   GVAAD+SHI + A V+G++GEE L  AL+G+DVV+IPAGVP
Sbjct: 19  LKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFN+NAGIVK L  A+A  CP A++ +I+NPVNSTVPIAAEV KK G YD 
Sbjct: 79  RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDP 138

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
            KLFGVTTLD+VRA TF A        EVNVPVIGGH+G TI+PL SQ   K    ++++
Sbjct: 139 NKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPGKV-LFTEDQ 197

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQS-S 239
           ++AL  R Q+ GTEVV+AKAG GSATLSMA+AGA F  + + GL G   +VEC +V+S  
Sbjct: 198 LEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDG 257

Query: 240 VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           VTE  FFA+ + LGKNG ++ LG+G LS +E++ L    PELK +I+KG +F  
Sbjct: 258 VTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  363 bits (934), Expect = e-126
 Identities = 173/295 (58%), Positives = 219/295 (74%), Gaps = 4/295 (1%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +K +P VS LSLYDI   PGVAAD+SHI++PA+V GYA  E   KAL G+D+V+I AGVP
Sbjct: 28  LKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVP 87

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFN NA IV+ L  A+A+  P A+V ++SNPVNSTVPIAAE  KKAG YD 
Sbjct: 88  RKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDP 147

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           +KLFGVTTLDVVRA+ F A  + +   +VNVPV+GGH+GVTI+PL SQ T  S  L +E+
Sbjct: 148 RKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQ-TGLS--LPEEQ 204

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           ++ +T R Q GG EVV+AK G GSATLSMAYA A ++ + L  L G   IVEC FV+S +
Sbjct: 205 VEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDM 264

Query: 241 T-ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
             E PFF+S V LGK G + VL +GPL+ YE++ LE+  P+LK +IEKG++FA +
Sbjct: 265 RPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK 319

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  237 bits (606), Expect = 4e-77
 Identities = 107/301 (35%), Positives = 154/301 (51%), Gaps = 19/301 (6%)

Query: 3   LDPLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           L  L S L L DI      GVA D+SH  +P   +     +   + L+G+D+V+I AGVP
Sbjct: 21  LQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTR DL   NA IVK +  AIA Y P A+V +++NPV+    IA +    +G    
Sbjct: 81  RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKF---SGFPKN 137

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-- 178
           + +   T LD  R +TF A K+ V   +V+  VIG H G T++PL+SQAT     L +  
Sbjct: 138 RVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELL 196

Query: 179 -----EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233
                E+++ L +R ++ G E++EAK          A A A   +A L     V  +   
Sbjct: 197 KEDTEEDLEELIERVRNAGAEIIEAK--GAGTYYGPAAALARMVEAILRDEKRV--LPVS 252

Query: 234 TFVQSS-VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA 292
            ++      E  +F     LGKNG +E+L L  LSD E++ L+    ELK +IE   +  
Sbjct: 253 VYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELV 311

Query: 293 N 293
            
Sbjct: 312 L 312

Length = 313

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  169 bits (429), Expect = 2e-52
 Identities = 74/178 (41%), Positives = 97/178 (54%), Gaps = 17/178 (9%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAG----------VTILPLFSQATPKSNNL 176
           TTLD  RA+TF A K  V    VNV VIG H+G          VTI+PL SQ        
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLK-D 59

Query: 177 SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV--PDIVECT 234
           +D E++ L +R Q+ G EV+EAKAG  S T SMAYA A  A A L G  GV    +    
Sbjct: 60  TDWELEELIERVQNAGYEVIEAKAG--STTYSMAYAAARIAKAILRGTGGVLSVGVYLDG 117

Query: 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA 292
           +      +  +F+  V LGK+G ++V+ + PL+D+E++ LE    ELK  IEKG  F 
Sbjct: 118 YYG--SPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAFV 173

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  158 bits (403), Expect = 8e-47
 Identities = 97/288 (33%), Positives = 142/288 (49%), Gaps = 49/288 (17%)

Query: 12  LYDIA-NTP-GVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           L DI    P G A D+S     + S  +V G    E +     GSDVV+I AG+PRKPGM
Sbjct: 27  LLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDI----AGSDVVVITAGIPRKPGM 82

Query: 66  TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
           +RDDL   NA IVK +   I  Y P+A+V +++NP++        V  KA  +   ++ G
Sbjct: 83  SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMT----YVAYKASGFPRNRVIG 138

Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLSDEE 180
           +   LD  R + F A ++ V V +V   V+GGH G T++PL   +T    P +  ++ EE
Sbjct: 139 MAGVLDSARFRYFIAEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEE 197

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLM-------------GLNGV 227
           I  + +RT++GG E+V      GSA  + A A A   +A L              G  G+
Sbjct: 198 IDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAEMVEAILKDKKRVLPCSAYLEGEYGI 256

Query: 228 PDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
            DI              F    V LGKNG ++++ L  L+D EK+  +
Sbjct: 257 KDI--------------FVGVPVVLGKNGVEKIIEL-DLTDEEKEAFD 289

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  158 bits (402), Expect = 1e-46
 Identities = 96/287 (33%), Positives = 146/287 (50%), Gaps = 47/287 (16%)

Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLG---KALEGSDVVIIPAGVPRKPGMT 66
           L+DI    P G A D++     A VEG+  +       + + GSDVV+I AGVPRKPGM+
Sbjct: 31  LFDIVEGVPQGKALDIAE---AAPVEGFDTKITGTNDYEDIAGSDVVVITAGVPRKPGMS 87

Query: 67  RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV 126
           RDDL  INA I+K +   I  Y P A+V +++NPV++   +A     K   + + ++ G+
Sbjct: 88  RDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGM 143

Query: 127 TT-LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLSDEEI 181
              LD  R +TF A ++NV V +V   V+GGH G +++PL   +T    P  + LS E++
Sbjct: 144 AGVLDSARFRTFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKL 202

Query: 182 KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA----------CLMGLN---GVP 228
             + +RT+ GG E+V      GSA  + A + A   +A          C   L    GV 
Sbjct: 203 DEIVERTRKGGAEIVGLL-KTGSAYYAPAASIAEMVEAILKDKKRVLPCSAYLEGEYGVK 261

Query: 229 DIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
           D+              +    V+LGKNG ++++ L  L D EK   +
Sbjct: 262 DV--------------YVGVPVKLGKNGVEKIIEL-ELDDEEKAAFD 293

Length = 307

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  148 bits (375), Expect = 1e-44
 Identities = 55/127 (43%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 1   MKLDPLVSSLSLYDIA--NTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
           + L  L   L L DI      GVA D+SH ++   V G  G +   +AL+ +DVV+I AG
Sbjct: 20  LALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDD-YEALKDADVVVITAG 78

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           VPRKPGMTR DL N NAGI K +  AIA   P A+V ++SNPV+    IA +V   +G  
Sbjct: 79  VPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNPVDILTYIAWKV---SGLP 135

Query: 119 DEKKLFG 125
            E+ +  
Sbjct: 136 PERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  118 bits (299), Expect = 5e-32
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 6   LVSSLSLYDI--ANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           L   L LYDI      GVA D+     P      +  +   +A + +DVVII AGV RKP
Sbjct: 25  LAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKP 84

Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DL   N  IVK +   I  Y P A + ++SNPV+    I   +  +     ++K+
Sbjct: 85  GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKV 140

Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATP 171
            G+ TLD +R +   A K+ V   +V V ++G H G + +P +S    
Sbjct: 141 IGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG-SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  120 bits (302), Expect = 7e-32
 Identities = 87/278 (31%), Positives = 134/278 (48%), Gaps = 30/278 (10%)

Query: 12  LYDI-ANTP-GVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           LYD+    P G A D+ H    + S   + G    E     ++ SDVV+I AGV RK  M
Sbjct: 34  LYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE----DIKDSDVVVITAGVQRKEEM 89

Query: 66  TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
           TR+DL  IN  I+KS+  ++  YCP+A V  ++NP++       +VF++       K+ G
Sbjct: 90  TREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICG 145

Query: 126 VT-TLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------PKSNN 175
           +   LD  R +   A K+ V   +V+  VIGGH G  ++PL    T          K   
Sbjct: 146 MAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGA 204

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIVECT 234
           ++++EI  + K+T++ G E+V+    KGSA  + A A     +A L     V    V   
Sbjct: 205 ITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAPAAAIVAMIEAYLKDEKRVLVCSVYLN 263

Query: 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQ 272
             Q +   L F    V +G  G ++V+ L  L+  EK+
Sbjct: 264 G-QYNCKNL-FVGVPVVIGGKGIEKVIEL-ELNAEEKE 298

Length = 319

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  113 bits (284), Expect = 1e-29
 Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 49  GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108
            SD+V+I AG+PRKPGM+R+DL ++NAGIV+ +   I  + P+ ++ ++SNP+++   +A
Sbjct: 69  NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA 128

Query: 109 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTI-LPLFS 167
            +   K+G   E+ +     LD  R +TF A ++ V V +V   V+GGH    + L  +S
Sbjct: 129 WQ---KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVPLVRYS 185

Query: 168 QAT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225
                P ++ +S E I  + +RT+ GG E+V     +GSA  + A +     +A L    
Sbjct: 186 TVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYYAPAASVVEMVEAILKDRK 244

Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
            V         Q  +  + +    V LGKNG + +  L  L   E   L 
Sbjct: 245 RVLPCAAYLDGQYGIDGI-YVGVPVILGKNGVEHIYEL-KLDQSELALLN 292

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  107 bits (269), Expect = 2e-27
 Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 30/288 (10%)

Query: 1   MKLDPLVSSLSLYDI--ANTPGVAADVSHINSPAQVEGYAGEEQLGKALE---GSDVVII 55
           +    L S L L D+      G A D+SH    A      G    G        +D+V+I
Sbjct: 17  LIAKGLASELVLVDVNEEKAKGDALDLSH----ASAFLATGTIVRGGDYADAADADIVVI 72

Query: 56  PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            AG PRKPG TR DL N NA I++S+ T +  Y P A++ ++SNPV+    I   V +K 
Sbjct: 73  TAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKL 128

Query: 116 GTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---- 170
               + ++ G  T LD  R ++  A K++V    V+  V+G H G + +  +S AT    
Sbjct: 129 SGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEH-GDSQVVAWSTATVGGL 187

Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP 228
              +    +  +++A+ +  +  G E++     KG+    +A A A    + L+    V 
Sbjct: 188 PLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAIADIVKSILLDERRV- 243

Query: 229 DIVECTFVQSSVTELP--FFASKVRLGKNGADEVLGLGPLSDYEKQGL 274
             +  + VQ     +     +    +G+ G   +L   PL++ E+  L
Sbjct: 244 --LPVSAVQEGQYGIEDVALSVPAVVGREGVVRIL-EIPLTEDEEAKL 288

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  101 bits (253), Expect = 6e-25
 Identities = 79/231 (34%), Positives = 120/231 (51%), Gaps = 31/231 (13%)

Query: 12  LYDIA-NTP-GVAADVSHINSPA----QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           L+DI  N P G A D+SH N  A    +V G    E +     GSDVVI+ AG+ ++PG 
Sbjct: 35  LFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI----AGSDVVIVTAGLTKRPGK 90

Query: 66  T-----RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +     RDDL  +NA I+  +   I  YCP+A V +I+NP++  V    ++ ++     +
Sbjct: 91  SDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMV----KLLQEHSGLPK 146

Query: 121 KKLFGVT-TLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P---- 171
            K+ G+   LD  R +T+ A K+ V   +V+  VIG H G  ++PL    T    P    
Sbjct: 147 NKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEF 205

Query: 172 -KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
            K   ++ EEI  + +RT++ G E+V+   G GSA  + A A    A+A L
Sbjct: 206 IKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGSAYFAPAAAAIEMAEAYL 255

Length = 321

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 95.5 bits (238), Expect = 7e-23
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 12/160 (7%)

Query: 49  GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108
           GSD+VII AGVPRK GM+R DL   NA IVK     IA + P   + +++NPV+     A
Sbjct: 72  GSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA 131

Query: 109 AEVFKKAGTYDEKKLFGVTT-LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFS 167
               K++G +D+ ++FG+ T LD +R K   A   NV ++EV+  +IG H G +++PL S
Sbjct: 132 ---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEH-GDSMVPLIS 186

Query: 168 QAT------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAG 201
             +       +     D +++ + +  ++ G  ++  K G
Sbjct: 187 STSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLKGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 92.1 bits (230), Expect = 1e-21
 Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 53/309 (17%)

Query: 6   LVSSLSLYDI--ANTPGVAADVSHI--NSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPR 61
           +   L L DI      G A D+       P+ V+  AG+       + +D+V+I AG P+
Sbjct: 24  IADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY---SDCKDADIVVITAGAPQ 80

Query: 62  KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEK 121
           KPG TR DL   NA I+KS+   I       +  + SNPV+    +   V +K     + 
Sbjct: 81  KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKN 136

Query: 122 KLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------P 171
           ++ G  T+LD  R +   A K+NV    V+  V+G H G +    +S  T          
Sbjct: 137 RVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLL 195

Query: 172 KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGS-----ATLSMAYAGAVFAD-------- 218
           K   LS+ ++  + +  +  G E++    GKG+     AT       A+  D        
Sbjct: 196 KEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGIATALARIVKAILNDENAILPVS 252

Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           A L G  G  D+              +      +G+NG +EV+ L  L++ E++  E   
Sbjct: 253 AYLDGEYGEKDV--------------YIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSA 297

Query: 279 PELKASIEK 287
             +K +I+K
Sbjct: 298 DIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 87.5 bits (218), Expect = 5e-20
 Identities = 84/311 (27%), Positives = 132/311 (42%), Gaps = 58/311 (18%)

Query: 6   LVSSLSLYDI--ANTPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPR 61
           L S + L DI  A   G A D++H  +P    V  YAG+       +G+DVV+I AG  +
Sbjct: 24  LASEIVLVDINKAKAEGEAMDLAH-GTPFVKPVRIYAGDY---ADCKGADVVVITAGANQ 79

Query: 62  KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEK 121
           KPG TR DL   N  I K +   I  Y P A++ +++NPV+    +   V  K       
Sbjct: 80  KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPN 135

Query: 122 KLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------- 170
           ++ G  T LD  R +      + V    V+  +IG H G + + ++S A           
Sbjct: 136 RVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFC 194

Query: 171 -PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPD 229
                   +E  + + +  ++   E++E    KG AT    YA  +           +  
Sbjct: 195 KLCGRPFDEEVREEIFEEVRNAAYEIIE---RKG-AT---YYAIGL----------ALAR 237

Query: 230 IVECTF--------VQSSVTELPFFASKVRL------GKNGADEVLGLGPLSDYEKQGLE 275
           IVE           V SS+ +  +    V L      G++G + VL   PLS+ E++ L 
Sbjct: 238 IVEAILRDENSVLTV-SSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALR 295

Query: 276 SLKPELKASIE 286
           +    LK +IE
Sbjct: 296 ASAEVLKEAIE 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 26/262 (9%)

Query: 25  VSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTA 84
            S + +P ++   +G+       + +D+V+I AG P+KPG TR +L   N  I+KS+   
Sbjct: 45  ASFLPTPKKI--RSGDY---SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPE 99

Query: 85  IANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVN 143
           +       +  + +NPV+    I   V  K   + + ++ G  T LD  R +   A K+ 
Sbjct: 100 VVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLG 155

Query: 144 VPVAEVNVPVIGGHAGVTILPLFSQAT----------PKSNNLSDEEIKALTKRTQDGGT 193
           V    V+  +IG H G + +P++S AT                +D +++ + K  +D   
Sbjct: 156 VDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAY 214

Query: 194 EVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLG 253
           E++     KG+    +  A A   +A L   N V  +      +  + ++ +      LG
Sbjct: 215 EIIN---RKGATYYGIGMAVARIVEAILHDENRVLPVSAYLDGEYGIKDV-YIGVPAVLG 270

Query: 254 KNGADEVLGLGPLSDYEKQGLE 275
           +NG +E++ L PLSD EK+  +
Sbjct: 271 RNGVEEIIEL-PLSDEEKEAFQ 291

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 80/314 (25%), Positives = 129/314 (41%), Gaps = 63/314 (20%)

Query: 6   LVSSLSLYDIA--NTPGVAADVSHINSPA-QVEGYAGEEQLGKALEGSDVVIIPAGVPRK 62
           +   L + DI      G A D+SH        + YAG+    K    +D+V+I AG P+K
Sbjct: 30  IADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCK---DADLVVITAGAPQK 86

Query: 63  PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
           PG TR DL   N  I KS+   +       +  + SNPV+    I      K   + +++
Sbjct: 87  PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----ILTYATWKLSGFPKER 142

Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----------P 171
           + G  T+LD  R +   + K++V    V+  +IG H G T  P++S A            
Sbjct: 143 VIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLE 201

Query: 172 KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA-----DACL----- 221
           ++    +E++  + +  +D   E++E K G     ++MA A    A     +A L     
Sbjct: 202 ENEQYDEEDLDEIFENVRDAAYEIIEKK-GATYYGIAMALARITKAILNNENAVLPVSAY 260

Query: 222 ----MGLN----GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQG 273
                G      GVP +V                      +NG  E++ L PL+D EKQ 
Sbjct: 261 LEGQYGEEDVYIGVPAVV---------------------NRNGIREIVEL-PLNDDEKQK 298

Query: 274 LESLKPELKASIEK 287
                  LK  +++
Sbjct: 299 FAHSADVLKEIMDE 312

Length = 315

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 56/178 (31%), Positives = 76/178 (42%), Gaps = 17/178 (9%)

Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNST 104
           A +  DV I+    PRKPGM R DL   NA I K    A+     P   V ++ NP N+ 
Sbjct: 73  AFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTN 132

Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTIL 163
             IA    K A     K    +T LD  RAK   A K+ V V++V NV + G H+  T +
Sbjct: 133 ALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQV 188

Query: 164 PLFSQATPKSNN--------LSDEEIK-ALTKRTQDGGTEVVEAKAGKGSATLSMAYA 212
           P  S A              L +E +     K  Q  G  +++ +    S+  S A A
Sbjct: 189 PDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKR--GASSAASAAKA 244

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 56/174 (32%), Positives = 77/174 (44%), Gaps = 12/174 (6%)

Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNST 104
           A +  D  ++    PRKPGM R DL + N  I K    A+         V ++ NP N+ 
Sbjct: 76  AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTN 135

Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILP 164
             IA+   K A     K    +T LD  RAK   A K  VPV++V   +I G+   T +P
Sbjct: 136 ALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVP 192

Query: 165 LFSQAT----PKSNNLSDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 212
            F+ AT    P    + D++          Q  G  V+EA+ G  SA  S A A
Sbjct: 193 DFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-GASSA-ASAANA 244

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 26/183 (14%)

Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNST 104
           A +  DV I+   +PRK GM R DL   N  I K    A+  Y   +  V ++ NP N+ 
Sbjct: 75  AFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTN 134

Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTIL 163
             I     K A +  ++    +T LD  RAK+  A K+ VPV++V NV + G H+  T  
Sbjct: 135 ALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQY 190

Query: 164 PLFSQATPKSNN--------------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSM 209
           P  + AT + N               L+ E I  + KR    G  V++A+  K S+ +S 
Sbjct: 191 PDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKR----GAAVIKAR--KLSSAMSA 244

Query: 210 AYA 212
           A A
Sbjct: 245 AKA 247

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 6   LVSSLSLYDIANTPGVAA----DVSHINS---PAQVEGYAGEEQLGKALEGSDVVIIPAG 58
           L S + L D+    GVA     D  H  +       +  AG+         +D+++I AG
Sbjct: 23  LFSEIVLIDV--NEGVAEGEALDFHHATALTYSTNTKIRAGDYD---DCADADIIVITAG 77

Query: 59  VPRKPGMT--RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAG 116
               PG T  R DL   NA I++ +   I      A++ +I+NP++  V IAA  F    
Sbjct: 78  PSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFD--- 134

Query: 117 TYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQA 169
            Y   K+ G  T LD  R +   A K  V    V   V+G H G    P++S  
Sbjct: 135 -YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSLV 186

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 10/194 (5%)

Query: 34  VEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHA 92
           + G     +L +A +  D   + A VP KPG  R DL   N  I K+   A++ Y  P  
Sbjct: 45  LAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTV 104

Query: 93  LVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVP 152
            V +I NPVN+   +A      A     +    +  LD  RA +  A K+ VPV  +   
Sbjct: 105 KVLVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 153 VIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSM--- 209
           V+ G+   +++   + A    N    +    L +   +   +  E  A +    L M   
Sbjct: 162 VVWGNHAESMVADLTHAEFTKNGKHQKVFDELCRDYPEP--DFFEVIAQRAWKILEMRGF 219

Query: 210 -AYAGAVFADACLM 222
            + A  V A    M
Sbjct: 220 TSAASPVKASLQHM 233

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 47/258 (18%)

Query: 44  GKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNS 103
                 S VVI+ AG  +  G +R DL   N  I K +   +  Y P+A++ ++SNPV+ 
Sbjct: 66  YSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD- 124

Query: 104 TVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTI 162
              I   V  K     + ++ G    LD  R +   A ++ V  + V+  +IG H G + 
Sbjct: 125 ---IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEH-GDSS 180

Query: 163 LPLFSQATPKSNNLSD-----------EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 211
           +P++S        L D           E+ K + K+  D   EV+     KG  + ++  
Sbjct: 181 VPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVI---KLKGYTSWAIGL 237

Query: 212 AGAVFADA-------------CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
           + A   DA              + GL+G+ D V           LP       LG+NG  
Sbjct: 238 SVADLVDAILRNTGRVHSVSTLVKGLHGIEDEV--------FLSLP-----CILGENGIT 284

Query: 259 EVLGLGPLSDYEKQGLES 276
            V+   PL++ E++ L+ 
Sbjct: 285 HVIKQ-PLTEEEQEKLQK 301

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 61.3 bits (149), Expect = 7e-11
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 24/183 (13%)

Query: 45  KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNS 103
           +A +G ++ ++  G PRK GM R D+ + N  I KS  +A+  +  P   V +++NP N+
Sbjct: 54  EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTIL 163
              I  E    A +  EK +  +T LD  RA    + ++ VPV++V   +I G+   T  
Sbjct: 114 NALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQY 170

Query: 164 PLFSQATPKSNN--------------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSM 209
           P  + AT K+ +              L+ E I  + +R    G  +++A+  K S+ LS 
Sbjct: 171 PDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQR----GAAIIKAR--KLSSALSA 224

Query: 210 AYA 212
           A +
Sbjct: 225 ASS 227

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 13/168 (7%)

Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNST 104
           A + +D  ++    PR PGM R DL   N  I  +   A+ +       V ++ NP N+ 
Sbjct: 75  AFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTN 134

Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTIL 163
             IA    K A          +T LD  RAK+  A K  VPV +V N+ + G H+  T  
Sbjct: 135 ALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQY 190

Query: 164 PLFSQAT----PKSNNLSDEE--IKALTKRTQDGGTEVVEAKAGKGSA 205
           P F+ AT    P +  ++D            Q  G  +++A+ G  SA
Sbjct: 191 PDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GASSA 237

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNST 104
           A    DV I+    PRK GM R DL + N  I K    A+         V ++ NP N+ 
Sbjct: 72  AFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTN 131

Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTIL 163
             + +     A +   K    +T LD  RA    A +  VPV++V NV + G H+  T  
Sbjct: 132 ALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS-TQY 187

Query: 164 PLFSQATPKSN 174
           P  + AT    
Sbjct: 188 PDVNHATVTKG 198

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 45  KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAI-ANYCPHALVNMISNPVNS 103
            A + +DV ++    PR PGM R DL   N  I  +   A+         V ++ NP N+
Sbjct: 76  VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135

Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTI 162
              IA    K A     +    +T LD  RA +  A K  VPVA++  + V G H+  T 
Sbjct: 136 NALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQ 191

Query: 163 LPLFSQAT----PKSNNLSDEE------IKALTKRTQDGGTEVVEAKAGKGSA 205
            P F  AT    P +  ++D+       I  + KR    G  ++EA+ G  SA
Sbjct: 192 YPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKR----GAAIIEAR-GASSA 239

Length = 326

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 24/241 (9%)

Query: 48  EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPI 107
            GSD+ I+ AG  + PG +R +L   N  + + +   +A Y P  ++ ++SNPV+    +
Sbjct: 104 AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYV 163

Query: 108 AAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH---------- 157
           A   +K +G    + +   T LD  R +   A  ++V   +V   ++G H          
Sbjct: 164 A---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSS 220

Query: 158 ---AGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 214
               GV +L    +   +      E ++ + +   D   EV++    KG  + ++ Y+ A
Sbjct: 221 VSVGGVPVLSFLEK---QQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTSWAIGYSVA 274

Query: 215 VFADACLMGLNGVPDIVECTFVQSSVTELPFFAS-KVRLGKNGADEVLGLGPLSDYEKQG 273
               + L     +  +         + E   F S   +LG+NG   V+ +  L+D E + 
Sbjct: 275 SLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAER 333

Query: 274 L 274
           L
Sbjct: 334 L 334

Length = 350

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 60  PRKPGMTRDDLFNINAGIV----KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
           PR PGM R DL +IN  I     K+L   +A+   +  V ++ NP N+   I     K A
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKAL-NEVAS--RNVKVIVVGNPCNTNALIC---LKNA 240

Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN 175
                K    +T LD  RAK   A K  V   +V+   I G+   T +P F  A  K N 
Sbjct: 241 PNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA--KING 298

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAG 201
           L  +E+    K  ++  T  V+ + G
Sbjct: 299 LPVKEVITDHKWLEEEFTPKVQKRGG 324

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV----KSLCTAIANYCPHALVNMISNPVN 102
            E +D  ++    PR PGM R DL +IN  I     K+L    +  C    V ++ NP N
Sbjct: 118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCK---VLVVGNPCN 174

Query: 103 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTI 162
           +   IA    K A     K    +T LD  RAK   A K       V+   I G+   T 
Sbjct: 175 TNALIA---MKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQ 231

Query: 163 LPLFSQA 169
           +P F  A
Sbjct: 232 VPDFVNA 238

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN00106	323	malate dehydrogenase	100.0
PLN02602	350	lactate dehydrogenase	100.0
PLN00135	309	malate dehydrogenase	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.97
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.97
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.96
PRK15076	431	alpha-galactosidase; Provisional	99.96
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.96
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.93
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.93
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.77
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	97.2
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.94
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	89.52
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.46
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	81.94

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=7.4e-68  Score=474.71  Aligned_cols=278  Identities=40%  Similarity=0.594  Sum_probs=253.2

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ++++.+||+|+|+++  ++|.++||+|+.+.  ..+.... +.| +++|+|||+||+++|.||||||+|+|++..|++|+
T Consensus        21 ~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~   98 (313)
T COG0039          21 LQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIV   98 (313)
T ss_pred             cccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHH
Confidence            566777999999996  89999999999743  2344432 245 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|+++|||++++|+|||+|+|||++   ||++| +|++||||+ |.||++||+++||++++++|++|+++|+|+|
T Consensus        99 ~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~ViGeH  174 (313)
T COG0039          99 KDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH  174 (313)
T ss_pred             HHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHHHHHHHhCCChhHceeeEeccC
Confidence            999999999999999999999999999997   89999 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCCC-------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCce
Q 022546          158 AGVTILPLFSQATPKSNNL-------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI  230 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~~-------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v  230 (295)
                      |+ ++||+||++++++.++       ++++++++.++++++|++|++.| |.| ++||+|.++++++++|++|++   ++
T Consensus       175 Gd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A~a~a~~~~ail~d~~---~v  248 (313)
T COG0039         175 GD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAALARMVEAILRDEK---RV  248 (313)
T ss_pred             CC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHHHHHHHHHHHHHcCCC---ce
Confidence            99 9999999999987432       23567899999999999999976 444 999999999999999999974   58


Q ss_pred             eEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          231 VECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       231 ~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      +|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|+.|++.|++.++.+.++++
T Consensus       249 l~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~~~~~~~  312 (313)
T COG0039         249 LPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELVL  312 (313)
T ss_pred             EEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8887 899999 89999999999999999999998 99999999999999999999999988764

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.2e-67  Score=479.31  Aligned_cols=291  Identities=59%  Similarity=0.904  Sum_probs=257.9

Q ss_pred             CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS   80 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~   80 (295)
                      |+++++++||+|+|++++.|+++||+|+..+.+++.+.+.+|++++++|||+||+++|.++++|++|++++..|++|+++
T Consensus        19 l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~   98 (312)
T TIGR01772        19 LKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKD   98 (312)
T ss_pred             HHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHH
Confidence            35678999999999988899999999987544666433333567999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEEecCCccchHHHHHH-HHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCC
Q 022546           81 LCTAIANYCPHALVNMISNPVNSTVPIAAE-VFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAG  159 (295)
Q Consensus        81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~-~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~  159 (295)
                      +++.|++++|++++|++|||+|++++++++ +++.+| ||++||||+|.|||+||++++|+++|++|++|+++||||||+
T Consensus        99 i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg-~p~~rViG~g~LDsaR~r~~la~~l~v~~~~v~~~ViGeHg~  177 (312)
T TIGR01772        99 LVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGV-YDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSG  177 (312)
T ss_pred             HHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcC-CChHHEEeeecchHHHHHHHHHHHhCCCHHHeEEEEEEecCC
Confidence            999999999999999999999995443222 377888 999999999779999999999999999999999999999986


Q ss_pred             ceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCC
Q 022546          160 VTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSS  239 (295)
Q Consensus       160 ~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~  239 (295)
                      ++++|+||++++. +.+++++++++.++++++|++|++.|+|||+++||+|.++++++++|+++..+.+.++|+++++|+
T Consensus       178 ~s~vp~~S~~~~~-~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~  256 (312)
T TIGR01772       178 ETIIPLISQCPGK-VLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESD  256 (312)
T ss_pred             Ccccccccccccc-CCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccC
Confidence            6899999999853 235666689999999999999999766889999999999999999999653334468898888998


Q ss_pred             C-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          240 V-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       240 ~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      | .+++|||+||++|++||++++++++|+++|+++|++|++.|++.++++++|+.
T Consensus       257 yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       257 GVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             CCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8 78999999999999999999987579999999999999999999999999975

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=2.7e-67  Score=476.12  Aligned_cols=289  Identities=67%  Similarity=1.017  Sum_probs=257.4

Q ss_pred             CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS   80 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~   80 (295)
                      |.++++++||+|+|++.++|+++||+|+..+++++...+++|++++++|||+||+|+|.|++|||+|++++..|++++++
T Consensus        20 l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~   99 (310)
T cd01337          20 LKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRD   99 (310)
T ss_pred             HHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            35688999999999987899999999997555676543445678999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEEecCCccchHHHHHH-HHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC-C
Q 022546           81 LCTAIANYCPHALVNMISNPVNSTVPIAAE-VFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH-A  158 (295)
Q Consensus        81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~-~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h-g  158 (295)
                      +++.|++++|+||+|++|||+|+|++++++ ++|.+| ||++||||+|.|||+||++++|+++|+++++|+++||||| |
T Consensus       100 i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~-~p~~rviG~~~LDs~R~~~~la~~l~v~~~~V~~~v~GeHsG  178 (310)
T cd01337         100 LATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGV-YDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSG  178 (310)
T ss_pred             HHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcC-CCHHHEEeeechHHHHHHHHHHHHhCcCHHHEEEEEEecCCC
Confidence            999999999999999999999999554332 378888 9999999998899999999999999999999999999999 7


Q ss_pred             CceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeC
Q 022546          159 GVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQS  238 (295)
Q Consensus       159 ~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g  238 (295)
                      + ++||+||++.+.. .+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|++|+++++.++++++++|
T Consensus       179 d-s~vp~~S~~~~~~-~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s~~~~  256 (310)
T cd01337         179 V-TILPLLSQCQPPF-TFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVES  256 (310)
T ss_pred             C-ceecccccccccc-cCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEEEEec
Confidence            8 8999999997743 3556668999999999999999986678999999999999999999987655556778887766


Q ss_pred             CCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022546          239 SVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA  292 (295)
Q Consensus       239 ~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  292 (295)
                      +..+++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+
T Consensus       257 ~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         257 DVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             cCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            545789999999999999999999734999999999999999999999999885

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.7e-65  Score=465.22  Aligned_cols=269  Identities=24%  Similarity=0.342  Sum_probs=244.4

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-C--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC--HHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-P--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT--RDDLFNIN   74 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~--r~~~~~~n   74 (295)
                      ..+++++||+|+|+++  ++|+++||+|+.. .  ..++++.  +| +++++|||+||+|+|.|++|||+  |++++..|
T Consensus        19 ~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvitaG~~~kpg~tr~R~dll~~N   95 (307)
T cd05290          19 LALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITAGPSIDPGNTDDRLDLAQTN   95 (307)
T ss_pred             HhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECCCCCCCCCCCchHHHHHHHH
Confidence            4679999999999987  8999999999753 1  2456554  34 68999999999999999999999  79999999


Q ss_pred             HHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEE
Q 022546           75 AGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPV  153 (295)
Q Consensus        75 ~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~v  153 (295)
                      ++|++++++.|++++|++++|++|||+|+||+++   +|.+| ||++||||+ |.|||+||++++|+++|++|++|+++|
T Consensus        96 ~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~V  171 (307)
T cd05290          96 AKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYV  171 (307)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHHHHHHHHHhCCCcccEEEEE
Confidence            9999999999999999999999999999999997   89999 999999999 999999999999999999999999999


Q ss_pred             eeCCCCceeeeccccCcCCCCCC---------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCc
Q 022546          154 IGGHAGVTILPLFSQATPKSNNL---------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGL  224 (295)
Q Consensus       154 iG~hg~~~~vp~~s~~~v~~~~~---------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~  224 (295)
                      |||||+ +++|+||++++++.++         .+..++++.++++++|++|++   +||+|+|++|.++++++++|++|.
T Consensus       172 iGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t~~~ia~a~~~ii~ail~d~  247 (307)
T cd05290         172 LGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWTNAGIAKSASRLIKAILLDE  247 (307)
T ss_pred             EecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCeehHHHHHHHHHHHHHHHhCC
Confidence            999999 9999999999976322         122478999999999999999   568999999999999999999886


Q ss_pred             CCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546          225 NGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI  285 (295)
Q Consensus       225 ~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~  285 (295)
                      +   .++|++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       248 ~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~~~  306 (307)
T cd05290         248 R---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRETI  306 (307)
T ss_pred             C---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            4   588887 789998 78999999999999999999998 999999999999999999764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.1e-64  Score=434.55  Aligned_cols=270  Identities=25%  Similarity=0.382  Sum_probs=247.3

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC---CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS---PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~---~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      ++++++||+|+|.++  ++|++|||+|++.   .+++..  + .| +.+.+++++||+|+|..+++|++|++++++|+.|
T Consensus        41 ~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~--~-~D-y~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~i  116 (332)
T KOG1495|consen   41 LKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA--S-KD-YSVSANSKLVIITAGARQSEGESRLDLVQRNVDI  116 (332)
T ss_pred             HhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe--c-Cc-ccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHH
Confidence            678999999999988  8999999999873   245553  2 46 5889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++.+++.+.+|.||++++++|||+|+|||++   ||.|| ||++||||+ |+||++|||++++++||++|++++++|+||
T Consensus       117 fK~iip~lv~ySpd~~llvvSNPVDilTYv~---wKLSg-fP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGE  192 (332)
T KOG1495|consen  117 FKAIIPALVKYSPDCILLVVSNPVDILTYVT---WKLSG-FPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGE  192 (332)
T ss_pred             HHHHHHHHhhcCCCeEEEEecCchHHHHHHH---HHHcC-CcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeec
Confidence            9999999999999999999999999999997   99999 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCC-----------CCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546          157 HAGVTILPLFSQATPKSN-----------NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN  225 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~-----------~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~  225 (295)
                      ||+ +.||+||..++.+.           ..+++.|+++.++|.+.+|||+++   ||+|.|++|.++++++++|+.|++
T Consensus       193 HGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KGyTswaIglsva~l~~ail~n~~  268 (332)
T KOG1495|consen  193 HGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAQAILRNLR  268 (332)
T ss_pred             cCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHhCcC
Confidence            999 89999999988652           245678999999999999999996   589999999999999999999986


Q ss_pred             CCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          226 GVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       226 ~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                         .++|++ .++|.|  .+++|||+||++|++|+.++++. +|+++|.++|.+|++.|.+ +++.+
T Consensus       269 ---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~~-~q~~l  330 (332)
T KOG1495|consen  269 ---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLLE-AQKSL  330 (332)
T ss_pred             ---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHHH-HHHhc
Confidence               588887 679987  57999999999999999999998 9999999999999999995 55443

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=2.7e-64  Score=456.42  Aligned_cols=268  Identities=27%  Similarity=0.429  Sum_probs=243.0

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      |+.+++++||+|+|+++  ++|+++||+|+...  ..++...  +| +++++|||+||+++|.|++|||+|++++.+|++
T Consensus        15 l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~rk~g~~R~dll~~N~~   91 (299)
T TIGR01771        15 LLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQKPGETRLELVGRNVR   91 (299)
T ss_pred             HHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH
Confidence            35679999999999987  89999999998632  2344443  34 689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|++++|+|++|++|||+|+||+++   ++++| +|++||||+ |.||++||++++|++++++|++|+++|||
T Consensus        92 i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v~G  167 (299)
T TIGR01771        92 IMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLSG-FPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIG  167 (299)
T ss_pred             HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHhC-CCHHHEEeccchHHHHHHHHHHHHHhCcCcCeEEEEEEe
Confidence            99999999999999999999999999999987   88998 999999999 89999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546          156 GHAGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN  225 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~  225 (295)
                      |||+ +++|+||++++++.++          .+.+++++.++++++|++|++   +||+++|++|.++++++++|++|++
T Consensus       168 eHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a~a~~~~i~ail~d~~  243 (299)
T TIGR01771       168 EHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIGMAVARIVEAILHDEN  243 (299)
T ss_pred             cCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHHHHHHHHHHHHHcCCC
Confidence            9998 8999999999976322          123477999999999999999   5689999999999999999999964


Q ss_pred             CCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 022546          226 GVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA  283 (295)
Q Consensus       226 ~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~  283 (295)
                         .++|++ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus       244 ---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       244 ---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             ---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence               588997 889998 67899999999999999999998 9999999999999999973

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=9.8e-63  Score=448.36  Aligned_cols=288  Identities=58%  Similarity=0.895  Sum_probs=257.9

Q ss_pred             CCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL   81 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i   81 (295)
                      ..++.++||+|+|++.+.|+++||+|+.....+...+...+.+++++|||+||+++|.++++|++|.+++..|+++++++
T Consensus        29 ~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i  108 (321)
T PTZ00325         29 KQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDL  108 (321)
T ss_pred             hcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45789999999999558999999999875444543322134368999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCeEEEEecCCccchHHHHH-HHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCc
Q 022546           82 CTAIANYCPHALVNMISNPVNSTVPIAA-EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGV  160 (295)
Q Consensus        82 ~~~i~~~~p~a~viv~tNP~d~~t~~~~-~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~  160 (295)
                      ++.|++++|+++++++|||+|+++++++ .+++.+| +|++||||++.|||+||+++||+++|++|++|+++||||||++
T Consensus       109 ~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg-~p~~~viG~g~LDs~R~r~~la~~l~v~~~~V~~~VlGeHGd~  187 (321)
T PTZ00325        109 VAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV-YDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGV  187 (321)
T ss_pred             HHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC-CChhheeechhHHHHHHHHHHHHHhCcChhheEEEEEeecCCc
Confidence            9999999999999999999999999873 2347788 9999999997799999999999999999999999999999984


Q ss_pred             eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCC
Q 022546          161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV  240 (295)
Q Consensus       161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~  240 (295)
                      ++||+||++   +.++++++++++.++++++|++|++.|.|||+|+||+|.++++++++|+++.++++.++++++++|+|
T Consensus       188 s~v~~~S~~---g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~y  264 (321)
T PTZ00325        188 TIVPLLSQT---GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDM  264 (321)
T ss_pred             ccccchhcc---CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCC
Confidence            599999998   33577777999999999999999998767799999999999999999998744445688888889998


Q ss_pred             -CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          241 -TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       241 -~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                       .+++|+|+||++|++|++++++ + +|+++|+++|++|++.|++.++++++|.++
T Consensus       265 g~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~  319 (321)
T PTZ00325        265 RPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK  319 (321)
T ss_pred             CCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             6899999999999999999999 6 999999999999999999999999999986

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=2.2e-63  Score=453.66  Aligned_cols=275  Identities=29%  Similarity=0.403  Sum_probs=244.6

Q ss_pred             CCCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHH
Q 022546            1 MKLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDD   69 (295)
Q Consensus         1 l~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~   69 (295)
                      |+.+++++     ||+|+|+++    ++|+++||+|+.++  ..++++  ++| +++++|||+||+|+|.++++||+|++
T Consensus        23 l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDvVVitAG~~~k~g~tR~d   99 (323)
T TIGR01759        23 IASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFKDVDAALLVGAFPRKPGMERAD   99 (323)
T ss_pred             HHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhCCCCEEEEeCCCCCCCCCcHHH
Confidence            35678899     999999954    79999999999732  233433  234 69999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCccchHHHHHHHHHHh-CCCCCCCeeecchhhHHHHHHHHHhhcCCCCc
Q 022546           70 LFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKKA-GTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVA  147 (295)
Q Consensus        70 ~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~s-g~~~~~kviG~t~ld~~R~~~~la~~l~v~~~  147 (295)
                      ++..|++|++++++.|++++| ++++|++|||+|+||+++   ++.+ | ||++||||+|.||++|||++||+++|++|+
T Consensus       100 ll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g-~p~~rViG~t~LDs~R~r~~la~~l~v~~~  175 (323)
T TIGR01759       100 LLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPD-IPPKNFSAMTRLDHNRAKYQLAAKAGVPVS  175 (323)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCC-CCHHHEEEeeHHHHHHHHHHHHHHhCcChH
Confidence            999999999999999999998 999999999999999997   8999 8 999999999999999999999999999999


Q ss_pred             cce-EEEeeCCCCceeeeccccCcCCCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchh-hHHHHHHHHHHH
Q 022546          148 EVN-VPVIGGHAGVTILPLFSQATPKSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATL-SMAYAGAVFADA  219 (295)
Q Consensus       148 ~v~-~~viG~hg~~~~vp~~s~~~v~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~-s~a~a~~~~i~a  219 (295)
                      +|+ .+||||||+ +++|+||++++++.++    +++.  +++|.+++++++++|++   +||+++| ++|.++++++++
T Consensus       176 ~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~~~~a~a~~~iv~a  251 (323)
T TIGR01759       176 DVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE---ARGASSAASAANAAIDHVRD  251 (323)
T ss_pred             HeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh---ccCCcchHHHHHHHHHHHHH
Confidence            995 579999998 8999999999976433    2222  68999999999999999   5688999 577999999999


Q ss_pred             HHcCcCCCCceeEEE-EeeC-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          220 CLMGLNGVPDIVECT-FVQS-SV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       220 i~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      |++|++. ..++|++ +++| +|  |+++|||+||++|++|++++++ + +|+++|+++|+.|++.|+++++++
T Consensus       252 il~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l~~sa~~lk~~~~~~  323 (323)
T TIGR01759       252 WVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGKLDATEDELLEEKEEA  323 (323)
T ss_pred             HHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence            9999732 2588998 8899 88  4899999999999999999999 7 999999999999999999999864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=4.3e-63  Score=450.75  Aligned_cols=272  Identities=25%  Similarity=0.372  Sum_probs=244.3

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      |..+++++||+|+|+++  +.|+++||+|+... ...... +++|+ ++++|||+||+++|.++++||+|++++.+|+++
T Consensus        22 l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvitaG~~~k~g~~R~dll~~N~~i   99 (312)
T cd05293          22 ILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTAGARQNEGESRLDLVQRNVDI   99 (312)
T ss_pred             HHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Confidence            34678999999999987  89999999999732 112222 23464 779999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|+++++|+++++++++|+++||||
T Consensus       100 ~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~k~sg-~p~~~viG~gt~Ld~~R~~~~la~~l~v~~~~v~~~v~Ge  175 (312)
T cd05293         100 FKGIIPKLVKYSPNAILLVVSNPVDIMTYVA---WKLSG-LPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGE  175 (312)
T ss_pred             HHHHHHHHHHhCCCcEEEEccChHHHHHHHH---HHHhC-CCHHHEEecCchHHHHHHHHHHHHHhCCChhhEEEEEeec
Confidence            9999999999999999999999999999987   89998 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCCC-----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546          157 HAGVTILPLFSQATPKSNNL-----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN  225 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~~-----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~  225 (295)
                      ||+ +++|+||++++++.++           ++++++++.++++++|++|++   +||+|+||+|.++++++++|++|.+
T Consensus       176 HG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~a~a~~~ii~ail~d~~  251 (312)
T cd05293         176 HGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGYTSWAIGLSVADLVDAILRNTG  251 (312)
T ss_pred             CCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHcCCC
Confidence            998 8999999999976321           234588999999999999999   5689999999999999999999864


Q ss_pred             CCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          226 GVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       226 ~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                         .+++++ +++|+|  +++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       252 ---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~~~~~  311 (312)
T cd05293         252 ---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLWEVQK  311 (312)
T ss_pred             ---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence               577877 789988  58999999999999999999998 9999999999999999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.5e-62  Score=447.49  Aligned_cols=281  Identities=75%  Similarity=1.159  Sum_probs=253.8

Q ss_pred             CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS   80 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~   80 (295)
                      |.++++++||+|+|++++.|+++||+|+..+..+..+++++|++++++|||+||+++|.++++|++|++++..|++++++
T Consensus        38 l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~  117 (323)
T PLN00106         38 MKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKT  117 (323)
T ss_pred             HHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            34678999999999988899999999998655666545667889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEEecCCcc----chHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           81 LCTAIANYCPHALVNMISNPVN----STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        81 i~~~i~~~~p~a~viv~tNP~d----~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      +++.+++++|+++++++|||+|    ++++++   ++.+| +|++||||+|.||++||++++|+++|+++++|+++|+||
T Consensus       118 i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~---~~~s~-~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGe  193 (323)
T PLN00106        118 LCEAVAKHCPNALVNIISNPVNSTVPIAAEVL---KKAGV-YDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGG  193 (323)
T ss_pred             HHHHHHHHCCCeEEEEeCCCccccHHHHHHHH---HHcCC-CCcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEe
Confidence            9999999999999999999999    777665   78888 999999999889999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEe
Q 022546          157 HAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFV  236 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~  236 (295)
                      ||++++||+||++.+... +++++++++.++++++|++|++.|.|||+++||+|.++++++++|++|+++++.++|++++
T Consensus       194 Hg~~s~vp~~S~~~~~~~-~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s~~  272 (323)
T PLN00106        194 HAGITILPLLSQATPKVS-FTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYV  272 (323)
T ss_pred             CCCccEeeehhcceeccc-CCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEEEE
Confidence            976689999999976432 6666789999999999999999755789999999999999999999987656679999987


Q ss_pred             eCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          237 QSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       237 ~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                      +++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus       273 ~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        273 QSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             CcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            77763349999999999999999999769999999999999999998765

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=6.2e-63  Score=454.55  Aligned_cols=273  Identities=23%  Similarity=0.367  Sum_probs=246.0

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ..+++++||+|+|+++  ++|+++||+|+.. .....+.. +.| +++++|||+||+++|.++++||+|++++.+|++++
T Consensus        57 ~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d-y~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~  134 (350)
T PLN02602         57 LTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STD-YAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALF  134 (350)
T ss_pred             HhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCC-HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence            4678999999999987  8999999999863 22234332 345 57899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|+++||++|+|++|||+|++|+++   ++++| ||++||||+ |.||++|+++++|+++|+++++|+++|||||
T Consensus       135 ~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeH  210 (350)
T PLN02602        135 RKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEH  210 (350)
T ss_pred             HHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecC
Confidence            999999999999999999999999999987   89999 999999999 7999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          158 AGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |+ +++|+||++++++.+           +++++++++.+++++++++|++   +||+|+|++|.++++++++|++|.+ 
T Consensus       211 Gd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~~gia~a~a~ii~ail~d~~-  285 (350)
T PLN02602        211 GD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTSWAIGYSVASLVRSLLRDQR-  285 (350)
T ss_pred             CC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHhcCC-
Confidence            98 999999999986632           2234578999999999999999   5689999999999999999999975 


Q ss_pred             CCceeEEE-EeeCCC-C--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          227 VPDIVECT-FVQSSV-T--ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~--~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                        .++|++ +++|+| .  +++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.++..
T Consensus       286 --~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~~~~~~~  348 (350)
T PLN02602        286 --RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLWEVQSQL  348 (350)
T ss_pred             --CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence              588888 679998 3  7999999999999999999998 999999999999999999877654

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=1.7e-62  Score=444.67  Aligned_cols=273  Identities=25%  Similarity=0.331  Sum_probs=244.2

Q ss_pred             eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546            9 SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC   82 (295)
Q Consensus         9 ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~   82 (295)
                      .|+|+|+++    ++|+++||+|+..+  ..++.   ++|.+++++|||+||+++|.|+++||+|++++..|++|+++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            689999975    79999999998732  23432   2344699999999999999999999999999999999999999


Q ss_pred             HHHHhh-CCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCC
Q 022546           83 TAIANY-CPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAG  159 (295)
Q Consensus        83 ~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~  159 (295)
                      +.|+++ +|+|++|++|||+|+||+++   ++.+| +|++|+||+ |.||++|||++||+++++++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999987   89999 999999999 99999999999999999999999 7999999999


Q ss_pred             ceeeeccccCcC----CCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCc
Q 022546          160 VTILPLFSQATP----KSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPD  229 (295)
Q Consensus       160 ~~~vp~~s~~~v----~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~  229 (295)
                       +++|+||++++    ++.++    .+.+  .+++.+++++++++|++.  +||+|+||+|.++++++++|+++++ ...
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             89999999999    65433    2333  688999999999999995  3689999999999999999999642 235


Q ss_pred             eeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          230 IVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       230 v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      ++|++ +++|+|  +++++||+||++|++|++.++++ +|+++|+++|++|++.|+++.+++++.|.
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~  309 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS  309 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88988 789998  48999999999999999999898 99999999999999999999999998763

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-61  Score=441.52  Aligned_cols=288  Identities=53%  Similarity=0.802  Sum_probs=256.6

Q ss_pred             CCCCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL   81 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i   81 (295)
                      +.+...+|+|+|+++ +.|+++|++|......++++ ..+|++++++|+|+||+++|.++++|++|.+++.+|+++++++
T Consensus        23 ~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~i  101 (312)
T PRK05086         23 QLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNL  101 (312)
T ss_pred             CCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            367889999999987 78899999986422345442 2357679999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCeEEEEecCCccchHHHHHHH-HHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCc
Q 022546           82 CTAIANYCPHALVNMISNPVNSTVPIAAEV-FKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGV  160 (295)
Q Consensus        82 ~~~i~~~~p~a~viv~tNP~d~~t~~~~~~-~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~  160 (295)
                      ++.|++++|+++++++|||+|+||+++++. +|.+| +|++||||+|.|||+||++++|+++|++|++|+++||||||++
T Consensus       102 i~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg-~p~~rvig~~~Lds~R~~~~ia~~l~~~~~~v~~~v~GeHg~~  180 (312)
T PRK05086        102 VEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGV-YDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV  180 (312)
T ss_pred             HHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcC-CCHHHEEeeecHHHHHHHHHHHHHhCCChhheEEEEEEecCCC
Confidence            999999999999999999999999987433 27778 9999999998899999999999999999999999999999776


Q ss_pred             eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCC
Q 022546          161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV  240 (295)
Q Consensus       161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~  240 (295)
                      ++||+||++  ++.++++++++++.++++++|++|++.|.|+|+|+||+|.++++++++|+++++++..++|+++++|+-
T Consensus       181 s~~p~~S~~--~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~~~~~~g  258 (312)
T PRK05086        181 TILPLLSQV--PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG  258 (312)
T ss_pred             ceecccccc--CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEEEEeccC
Confidence            899999999  455577777999999999999999997667799999999999999999998865555688887777753


Q ss_pred             CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       241 ~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      .+++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|+.+
T Consensus       259 ~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        259 KYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             CcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            468999999999999999999977999999999999999999999999999864

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=1.4e-61  Score=441.94  Aligned_cols=273  Identities=27%  Similarity=0.408  Sum_probs=248.0

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      |.++++++||+|+|+++  ++|+++||+|+... .+++..+  ++ +++++|||+||+++|.|++|||+|++++..|+++
T Consensus        25 l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivIitag~~~k~g~~R~dll~~N~~i  101 (315)
T PRK00066         25 LVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVVITAGAPQKPGETRLDLVEKNLKI  101 (315)
T ss_pred             HHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHH
Confidence            35689999999999987  79999999998632 3455543  34 5889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.+++++|+||+|++|||+|++|+++   ++++| +|++||||+ |.||++||++++|+++|++|++|+++||||
T Consensus       102 ~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~viGe  177 (315)
T PRK00066        102 FKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGE  177 (315)
T ss_pred             HHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHHHHHHHHHHhCCCcccEEEEEEec
Confidence            9999999999999999999999999999987   88998 999999999 899999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCC----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          157 HAGVTILPLFSQATPKSNN----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      ||+ +++|+||++++++.+          +++++++++.++++++++++++   +||+++||+|.++++++++|+++.+ 
T Consensus       178 HG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t~~~~a~~~~~i~~ail~~~~-  252 (315)
T PRK00066        178 HGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGATYYGIAMALARITKAILNNEN-  252 (315)
T ss_pred             CCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCeehHHHHHHHHHHHHHHHcCCC-
Confidence            999 899999999997632          3445688999999999999999   5689999999999999999999864 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                        .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.++..
T Consensus       253 --~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~~~~~  313 (315)
T PRK00066        253 --AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDEA  313 (315)
T ss_pred             --eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence              588887 789999 78999999999999999999998 999999999999999999988753

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=2.4e-61  Score=438.16  Aligned_cols=273  Identities=22%  Similarity=0.275  Sum_probs=239.2

Q ss_pred             eEEEEeCCC----chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546            9 SLSLYDIAN----TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT   83 (295)
Q Consensus         9 ei~L~D~~~----~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~   83 (295)
                      .|+|+|+++    ++|+++||+|+.+ .......  ++|++++++|||+||+|+|.|+++||+|++++..|++|++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            589999976    7999999999972 2222222  34667899999999999999999999999999999999999999


Q ss_pred             HHHhhCCC-eEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEE-EeeCCCCc
Q 022546           84 AIANYCPH-ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVP-VIGGHAGV  160 (295)
Q Consensus        84 ~i~~~~p~-a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~  160 (295)
                      .|++++|+ +++|++|||+|+||++++  ++.+| ||++ +||+ |.|||+|||++||++++++|++|+.+ ||||||+ 
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~~--~~~sg-~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVAM--LHAPK-LSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHHH--HHcCC-CCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence            99999954 889999999999999862  37788 9998 9999 99999999999999999999999655 9999999 


Q ss_pred             eeeeccccCcC--CCCC------CCHH-HHHHHHHHhhchhhhhhhhccCCCcchhhHH-HHHHHHHHHHHcCcCCCCce
Q 022546          161 TILPLFSQATP--KSNN------LSDE-EIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAVFADACLMGLNGVPDI  230 (295)
Q Consensus       161 ~~vp~~s~~~v--~~~~------~~~~-~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a-~a~~~~i~ai~~~~~~~~~v  230 (295)
                      +++|+||++++  ++.+      ++++ .++++.+++++++++|++   +||+|+|++| .++++++++|++|++. ..+
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i  245 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV  245 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence            89999999999  7633      2221 368899999999999999   5689999977 6999999999997653 368


Q ss_pred             eEEE-Eee-C-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          231 VECT-FVQ-S-SV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       231 ~~~~-~~~-g-~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      +|++ +++ | +|  ++|++||+||++|++|++++++ + +|+++|+++|++|+++|+++.+.+++.|.
T Consensus       246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~~  313 (313)
T TIGR01756       246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKALA  313 (313)
T ss_pred             EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9998 565 3 88  4799999999999999999999 8 99999999999999999999999988763

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=1e-61  Score=443.33  Aligned_cols=276  Identities=25%  Similarity=0.365  Sum_probs=243.7

Q ss_pred             CCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHH
Q 022546            3 LDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF   71 (295)
Q Consensus         3 ~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~   71 (295)
                      +.++++     ||+|+|+++    ++|+++||+|+.++  ..++++  +++ +++++|||+||+++|.++++||+|++++
T Consensus        26 ~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~daDiVVitaG~~~k~g~tR~dll  102 (326)
T PRK05442         26 SGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFKDADVALLVGARPRGPGMERKDLL  102 (326)
T ss_pred             hhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhCCCCEEEEeCCCCCCCCCcHHHHH
Confidence            456677     999999954    79999999998622  244443  234 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccce
Q 022546           72 NINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVN  150 (295)
Q Consensus        72 ~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~  150 (295)
                      ..|++|++++++.|++|+ |++++|++|||+|+||+++   +|.+|+||++||||+|.||++|||++||++++++|++|+
T Consensus       103 ~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~  179 (326)
T PRK05442        103 EANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIK  179 (326)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeE
Confidence            999999999999999988 8999999999999999997   899933999999999999999999999999999999999


Q ss_pred             EE-EeeCCCCceeeeccccCcCCCCC----CCHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHH-HHHHHHHHHc
Q 022546          151 VP-VIGGHAGVTILPLFSQATPKSNN----LSDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYA-GAVFADACLM  222 (295)
Q Consensus       151 ~~-viG~hg~~~~vp~~s~~~v~~~~----~~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a-~~~~i~ai~~  222 (295)
                      ++ ||||||+ +++|+||++++++.+    +++.+  ++++.+++++++++|++   +||+++|++|.+ +++++++|++
T Consensus       180 ~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~~~a~~~~~~iv~ail~  255 (326)
T PRK05442        180 KMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE---ARGASSAASAANAAIDHVRDWVL  255 (326)
T ss_pred             EeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---CcCCccHHHHHHHHHHHHHHHHh
Confidence            86 5999999 899999999998643    23333  67899999999999999   568999999999 5999999999


Q ss_pred             CcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546          223 GLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQF  291 (295)
Q Consensus       223 ~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~  291 (295)
                      |.+. ..++|++ +++|+|  |++++||+||++| +|++++++ + +|+++|+++|++|++.|+++.+.+.++
T Consensus       256 ~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~~  325 (326)
T PRK05442        256 GTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKIDATLAELEEERDAVKHL  325 (326)
T ss_pred             CCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9521 2588887 679998  5899999999999 99999966 6 999999999999999999999988765

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.6e-61  Score=438.24  Aligned_cols=271  Identities=28%  Similarity=0.403  Sum_probs=245.3

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      |+..++++||+|+|+++  +.|+++||+|+... ...+.+. ++| +++++|||+||+++|.|+++||+|++++.+|+++
T Consensus        17 l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i   94 (300)
T cd00300          17 LIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAPRKPGETRLDLINRNAPI   94 (300)
T ss_pred             HHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHH
Confidence            34678999999999987  89999999998643 2233332 245 5899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|+++||+||+|++|||+|++|+++   ++++| +|++||||+ |.||++|+++++|+++++++++|+++|+||
T Consensus        95 ~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~---~~~sg-~~~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~viGe  170 (300)
T cd00300          95 LRSVITNLKKYGPDAIILVVSNPVDILTYVA---QKLSG-LPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE  170 (300)
T ss_pred             HHHHHHHHHHhCCCeEEEEccChHHHHHHHH---HHHhC-cCHHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEEEec
Confidence            9999999999999999999999999999987   89999 999999999 899999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCCC------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCce
Q 022546          157 HAGVTILPLFSQATPKSNNL------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI  230 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~~------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v  230 (295)
                      ||+ +++|+||++++++.++      ++..++++.++++++++++++   +||+++||+|.++++++++|+++.+   .+
T Consensus       171 Hg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~~~~~~ai~~~~~---~v  243 (300)
T cd00300         171 HGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAIADIVKSILLDER---RV  243 (300)
T ss_pred             cCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHHHHHHHHHHcCCC---eE
Confidence            998 8999999999976432      234578999999999999999   5689999999999999999999864   58


Q ss_pred             eEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546          231 VECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI  285 (295)
Q Consensus       231 ~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~  285 (295)
                      +|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       244 ~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         244 LPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             EEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            8888 779998 78999999999999999999998 999999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=3.3e-61  Score=451.80  Aligned_cols=277  Identities=23%  Similarity=0.282  Sum_probs=246.3

Q ss_pred             CCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546            4 DPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK   79 (295)
Q Consensus         4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~   79 (295)
                      ++++.||+|+|+++  ++|++|||+|+.++  ..+++.  ++| |++++|||+||+++|.|+++||+|++++..|++|++
T Consensus       130 ~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k  206 (444)
T PLN00112        130 QPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFA  206 (444)
T ss_pred             CCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence            48899999999988  89999999998732  244433  234 699999999999999999999999999999999999


Q ss_pred             HHHHHHHh-hCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccc-eEEEeeC
Q 022546           80 SLCTAIAN-YCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEV-NVPVIGG  156 (295)
Q Consensus        80 ~i~~~i~~-~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v-~~~viG~  156 (295)
                      ++++.|++ ++|++++|++|||+|+||+++   ++.+| ++++|+||+ |.||++||+++||+++|+++++| +++||||
T Consensus       207 ~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~Ge  282 (444)
T PLN00112        207 EQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGN  282 (444)
T ss_pred             HHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEec
Confidence            99999999 599999999999999999997   89999 889999999 99999999999999999999999 5699999


Q ss_pred             CCCceeeeccccCcCCCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchh-hHHHHHHHHHHHHHcCcCCCCc
Q 022546          157 HAGVTILPLFSQATPKSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATL-SMAYAGAVFADACLMGLNGVPD  229 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~-s~a~a~~~~i~ai~~~~~~~~~  229 (295)
                      ||+ ++||+||++++++.++    ++.+  ++++.++++++|++|++   +||+++| ++|.++++++++|+++.+. +.
T Consensus       283 HGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~---~kG~t~~~s~a~ai~~~I~ail~~~d~-~~  357 (444)
T PLN00112        283 HST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK---KWGRSSAASTAVSIADAIKSLVTPTPE-GD  357 (444)
T ss_pred             CCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHHHHHcCCCC-Ce
Confidence            999 9999999999987543    2223  68999999999999999   4576766 9999999999999955443 36


Q ss_pred             eeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          230 IVECT-FVQSS-V--TELPFFASKVRLGKNGADEVL-GLGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       230 v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~-~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      ++|++ +++|+ |  ++|++||+||++|++|+++++ ++ +|+++|+++|++|+++|.++.+.+...++
T Consensus       358 vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~  425 (444)
T PLN00112        358 WFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRERIKKSEAELLAEKRCVAHLTG  425 (444)
T ss_pred             EEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89998 78994 8  589999999999999999999 67 99999999999999999999998877654

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=1.4e-61  Score=442.51  Aligned_cols=276  Identities=28%  Similarity=0.350  Sum_probs=244.5

Q ss_pred             CCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546            2 KLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL   70 (295)
Q Consensus         2 ~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~   70 (295)
                      .+.++++     +|+|+|+++    ++|+++||+|+.++  ..+++..  ++ +++++|||+||+++|.|+++||+|+++
T Consensus        21 ~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~--~~-~~~~~~aDiVVitAG~~~~~g~tR~dl   97 (323)
T cd00704          21 ASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITT--DP-EEAFKDVDVAILVGAFPRKPGMERADL   97 (323)
T ss_pred             HhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEec--Ch-HHHhCCCCEEEEeCCCCCCcCCcHHHH
Confidence            4567888     499999975    79999999998521  2233332  33 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc
Q 022546           71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV  149 (295)
Q Consensus        71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v  149 (295)
                      +.+|++|++++++.|++++ |++++|++|||+|+||+++   +|.+|.+|++||||+|.||++|||++||++++++|++|
T Consensus        98 l~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V  174 (323)
T cd00704          98 LRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA---LKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDV  174 (323)
T ss_pred             HHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHc
Confidence            9999999999999999996 9999999999999999987   89999459999999999999999999999999999999


Q ss_pred             -eEEEeeCCCCceeeeccccCcCCCCCC--------CHH-HHHHHHHHhhchhhhhhhhccCCCcchhh-HHHHHHHHHH
Q 022546          150 -NVPVIGGHAGVTILPLFSQATPKSNNL--------SDE-EIKALTKRTQDGGTEVVEAKAGKGSATLS-MAYAGAVFAD  218 (295)
Q Consensus       150 -~~~viG~hg~~~~vp~~s~~~v~~~~~--------~~~-~~~~i~~~v~~~~~~i~~~~~~kg~~~~s-~a~a~~~~i~  218 (295)
                       +++||||||+ +++|+||++++++.++        +++ ..++|.+++++++++|++   +||+++|+ +|.+++++++
T Consensus       175 ~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~---~kg~t~~~~~a~a~~~iv~  250 (323)
T cd00704         175 KNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK---KRGASSAASAAKAIADHVK  250 (323)
T ss_pred             eeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh---ccCcchhHHHHHHHHHHHH
Confidence             5699999999 8999999999976432        222 257899999999999999   45788896 6999999999


Q ss_pred             HHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          219 ACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       219 ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      +|++|++++ .++|++ +++|+|   |++++||+||+||++||++++++ +|+++|+++|++|++.|+++.++++
T Consensus       251 ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~  323 (323)
T cd00704         251 DWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKLKATEEELIEEKEIAL  323 (323)
T ss_pred             HHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            999998644 589997 889987   47999999999999999999998 9999999999999999999998874

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=4.4e-61  Score=444.97  Aligned_cols=278  Identities=24%  Similarity=0.279  Sum_probs=243.9

Q ss_pred             CCCCCcC-----eEEEE--eCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546            2 KLDPLVS-----SLSLY--DIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL   70 (295)
Q Consensus         2 ~~~~~~~-----ei~L~--D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~   70 (295)
                      ...++++     +|+|+  |++.  ++|+++||+|+.++  ..+++.+  +| +++++|||+||+++|.|+++||+|+++
T Consensus        65 ~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~--~~-y~~~kdaDIVVitAG~prkpg~tR~dl  141 (387)
T TIGR01757        65 ASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI--DP-YEVFEDADWALLIGAKPRGPGMERADL  141 (387)
T ss_pred             HhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec--CC-HHHhCCCCEEEECCCCCCCCCCCHHHH
Confidence            4677888     57777  6666  89999999998722  2444332  34 699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCcc
Q 022546           71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAE  148 (295)
Q Consensus        71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~  148 (295)
                      +..|++|++++++.|++++ |++++||+|||+|+||+++   ++.+| +|++|+||+ |.||++|||++||+++++++++
T Consensus       142 l~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~  217 (387)
T TIGR01757       142 LDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKNFHALTRLDENRAKCQLALKSGKFYTS  217 (387)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccEEEecchhHHHHHHHHHHHHHCcChhH
Confidence            9999999999999999987 9999999999999999987   89999 889999999 9999999999999999999999


Q ss_pred             c-eEEEeeCCCCceeeeccccCcCCCCCCC----HHH--HHHHHHHhhchhhhhhhhccCCCcchh-hHHHHHHHHHHHH
Q 022546          149 V-NVPVIGGHAGVTILPLFSQATPKSNNLS----DEE--IKALTKRTQDGGTEVVEAKAGKGSATL-SMAYAGAVFADAC  220 (295)
Q Consensus       149 v-~~~viG~hg~~~~vp~~s~~~v~~~~~~----~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~-s~a~a~~~~i~ai  220 (295)
                      | +++||||||+ +++|+||++++++.++.    +.+  ++++.++++++|++|++   +||++.| ++|.++++++++|
T Consensus       218 V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~---~KG~t~~~s~a~ai~~~i~ai  293 (387)
T TIGR01757       218 VSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK---KWGRSSAASTAVSIADAIKSL  293 (387)
T ss_pred             cceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHHHH
Confidence            9 5999999999 89999999999774332    222  68999999999999999   4566666 9999999999999


Q ss_pred             HcCcCCCCceeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEc-cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022546          221 LMGLNGVPDIVECT-FVQSS-V--TELPFFASKVRLGKNGADEVL-GLGPLSDYEKQGLESLKPELKASIEKGIQFA  292 (295)
Q Consensus       221 ~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~-~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  292 (295)
                      ++|.+. ..++|++ +++|+ |  +++++||+||++|++|+++++ ++ +|+++|+++|++|++.|+++.+.+++.+
T Consensus       294 ~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~  368 (387)
T TIGR01757       294 VVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRERIRKSEDELLKEKECVAHLI  368 (387)
T ss_pred             hcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            955443 3588887 77996 8  589999999999999999997 87 9999999999999999999999988754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=8.7e-61  Score=436.39  Aligned_cols=270  Identities=28%  Similarity=0.408  Sum_probs=243.5

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      +.+++.++|+|+|+++  ++++++||+|+..  ...+....  .+ ++++++||+||+++|.|+++||+|++++.+|+++
T Consensus        20 ~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i   96 (306)
T cd05291          20 VNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITAGAPQKPGETRLDLLEKNAKI   96 (306)
T ss_pred             HhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHH
Confidence            4578889999999987  7999999999853  22333332  34 5789999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|++++|+|++|++|||+|+||+++   ++++| ||++||||+ |.||++||++++|+++++++++|+++|||+
T Consensus        97 ~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~---~~~~g-~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~V~G~  172 (306)
T cd05291          97 MKSIVPKIKASGFDGIFLVASNPVDVITYVV---QKLSG-LPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGE  172 (306)
T ss_pred             HHHHHHHHHHhCCCeEEEEecChHHHHHHHH---HHHhC-cCHHHEeeccchHHHHHHHHHHHHHHCCCcccceEEEEec
Confidence            9999999999999999999999999999987   78888 999999999 899999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCC
Q 022546          157 HAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV  227 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~  227 (295)
                      ||+ +++|+||++++++.+         +.+++++++.++++++|++|++   +||+++|++|.++++++++|+++.+  
T Consensus       173 Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~~~a~a~~~~~~ail~~~~--  246 (306)
T cd05291         173 HGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGIATALARIVKAILNDEN--  246 (306)
T ss_pred             CCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHHHHHHHHHHHHHHHHcCCC--
Confidence            999 899999999987632         2244588999999999999999   5689999999999999999999854  


Q ss_pred             CceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          228 PDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       228 ~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                       .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.++
T Consensus       247 -~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~~  305 (306)
T cd05291         247 -AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIK  305 (306)
T ss_pred             -EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhh
Confidence             588887 789999 78999999999999999999998 9999999999999999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.7e-60  Score=408.52  Aligned_cols=293  Identities=70%  Similarity=1.077  Sum_probs=278.9

Q ss_pred             CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS   80 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~   80 (295)
                      ||++|++++|.|||+..+.|.+.||+|+..+..+.++.+.+++++++++||+|||.+|+||||||+|+|++..|+-|+++
T Consensus        48 lK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~  127 (345)
T KOG1494|consen   48 LKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKT  127 (345)
T ss_pred             HhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHH
Confidence            68999999999999988999999999999888999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCC-ccceEEEeeCCCC
Q 022546           81 LCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPV-AEVNVPVIGGHAG  159 (295)
Q Consensus        81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~-~~v~~~viG~hg~  159 (295)
                      ++..+.++||+|.+.++|||+|...+++++++|+.|.|+++|+||+|.||..|+++++++.++++| ++++++|+|+|.+
T Consensus       128 l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG  207 (345)
T KOG1494|consen  128 LAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAG  207 (345)
T ss_pred             HHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999 5599999999999


Q ss_pred             ceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCC
Q 022546          160 VTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSS  239 (295)
Q Consensus       160 ~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~  239 (295)
                      .|++|++|+.++.. .++++++++++.+++.+|.|+++.|.|+|++.+|+|+|.+++..+++.+.+++..+.-|+|+.+.
T Consensus       208 ~TIlPLlSQ~~p~~-~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~  286 (345)
T KOG1494|consen  208 ITIIPLLSQCKPPF-RFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP  286 (345)
T ss_pred             ceEeeecccCCCcc-cCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc
Confidence            99999999998754 37888999999999999999999999999999999999999999999999987778889988776


Q ss_pred             CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          240 VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       240 ~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      ..+-.||+.|+++|++|++++..+++||++|++.|+.+..+|++.|+++++|++.
T Consensus       287 ~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv~F~~~  341 (345)
T KOG1494|consen  287 VTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGVTFVKS  341 (345)
T ss_pred             ccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            4467799999999999999999999999999999999999999999999999864

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.5e-59  Score=429.00  Aligned_cols=276  Identities=25%  Similarity=0.339  Sum_probs=245.3

Q ss_pred             CCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546            2 KLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL   70 (295)
Q Consensus         2 ~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~   70 (295)
                      .+.++++     ||+|+|+++    ++|+++||+|+.++  ..+++.  ++| +++++|||+||+++|.++++||+|+++
T Consensus        23 ~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivvitaG~~~k~g~tR~dl   99 (322)
T cd01338          23 ASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFKDADWALLVGAKPRGPGMERADL   99 (322)
T ss_pred             HhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhCCCCEEEEeCCCCCCCCCcHHHH
Confidence            3567888     999999954    79999999998732  245543  234 699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc
Q 022546           71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV  149 (295)
Q Consensus        71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v  149 (295)
                      +..|++|++++++.|++++ |++++|++|||+|+||+++   +|.+|.||++||+|+|.||++||++.+|+++|+++++|
T Consensus       100 l~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v  176 (322)
T cd01338         100 LKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDV  176 (322)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHe
Confidence            9999999999999999999 5999999999999999987   79995599999999999999999999999999999999


Q ss_pred             eE-EEeeCCCCceeeeccccCcCCCCCC----CHH--HHHHHHHHhhchhhhhhhhccCCCcchhhHH-HHHHHHHHHHH
Q 022546          150 NV-PVIGGHAGVTILPLFSQATPKSNNL----SDE--EIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAVFADACL  221 (295)
Q Consensus       150 ~~-~viG~hg~~~~vp~~s~~~v~~~~~----~~~--~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a-~a~~~~i~ai~  221 (295)
                      ++ +|||+||+ +++|+||++++++.++    .+.  .++++.+++++++++|++   +||+++|++| .++++++++|+
T Consensus       177 ~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~~~~a~a~~~iv~ail  252 (322)
T cd01338         177 KNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---ARGASSAASAANAAIDHMRDWV  252 (322)
T ss_pred             EEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---CcCCccHHHHHHHHHHHHHHHh
Confidence            98 56999998 9999999999876433    343  367999999999999999   5689999999 59999999999


Q ss_pred             cCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          222 MGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       222 ~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      +|++. ..++|++ +++|+|  |++++||+||++|++||++++++ +|+++|+++|++|++.|+++.++..
T Consensus       253 ~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~l~~~~~~~~  321 (322)
T cd01338         253 LGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDATLAELLEEREAVK  321 (322)
T ss_pred             cCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99852 2588887 779998  58999999999999999999998 9999999999999999999987653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-59  Score=425.06  Aligned_cols=276  Identities=30%  Similarity=0.491  Sum_probs=246.6

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ..++ .+|+|+|+++  ++|+++|++|+..  ....+.. +++|+ ++++|||+||+++|.++++|++|.+++..|++++
T Consensus        26 ~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~  102 (319)
T PTZ00117         26 QKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVITAGVQRKEEMTREDLLTINGKIM  102 (319)
T ss_pred             HCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
Confidence            4455 7899999987  7899999999853  1123332 33565 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|+++||++|+|++|||+|++++++   ++.++ +|++||||+ |.||++||+++||+++|++|++|+++|+|||
T Consensus       103 ~~i~~~i~~~~p~a~vivvsNP~di~t~~~---~~~s~-~p~~rviG~gt~lds~R~~~~la~~l~v~~~~v~~~viGeH  178 (319)
T PTZ00117        103 KSVAESVKKYCPNAFVICVTNPLDCMVKVF---QEKSG-IPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH  178 (319)
T ss_pred             HHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHhhC-CCcccEEEecchHHHHHHHHHHHHHhCCCcccceEEEeecC
Confidence            999999999999999999999999999886   78888 999999999 5999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          158 AGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      |+ +++|+||++++++.+         +++++++++.++++++++++++.+ |||+++||+|.++++++++|++|.+   
T Consensus       179 g~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~~~~a~a~~~~~~ail~~~~---  253 (319)
T PTZ00117        179 GD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAFFAPAAAIVAMIEAYLKDEK---  253 (319)
T ss_pred             CC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHhcCCC---
Confidence            98 899999999987632         445568899999999999999976 7899999999999999999999864   


Q ss_pred             ceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546          229 DIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF  291 (295)
Q Consensus       229 ~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~  291 (295)
                      .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++...+
T Consensus       254 ~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~~~~~~~~~  317 (319)
T PTZ00117        254 RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQKAKAL  317 (319)
T ss_pred             eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            588998 789998 46899999999999999999998 999999999999999999998876544

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=8e-59  Score=422.24  Aligned_cols=269  Identities=30%  Similarity=0.513  Sum_probs=242.7

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      +++.. +++|+|+++  +.|.++|+.|...    ..+++.   ++|+ +++++||+||+++|.|+++|++|++++..|.+
T Consensus        22 ~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIitag~p~~~~~sR~~l~~~N~~   96 (305)
T TIGR01763        22 EKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVITAGLPRKPGMSREDLLSMNAG   96 (305)
T ss_pred             HcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEEcCCCCCCcCCCHHHHHHHHHH
Confidence            45666 799999987  6788999988642    124442   3565 56999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|++++|++++|++|||+|+||+++   +|++| +|++||||+ |.|||+||++++|++|++++++|+++|||
T Consensus        97 iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v~G  172 (305)
T TIGR01763        97 IVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG  172 (305)
T ss_pred             HHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeEEe
Confidence            99999999999999999999999999999987   89999 999999999 69999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCcee
Q 022546          156 GHAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV  231 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~  231 (295)
                      |||+ +++|+||++++++.+    ++++.++++.++++++|++|++.+ |||+++|++|.++++++++|++|++   .++
T Consensus       173 eHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~~~i~~ai~~~~~---~v~  247 (305)
T TIGR01763       173 GHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASVVEMVEAILKDRK---RVL  247 (305)
T ss_pred             cCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhCCCC---eEE
Confidence            9999 899999999997743    344558999999999999999975 7899999999999999999999874   588


Q ss_pred             EEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          232 ECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       232 ~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                      |++ +++|+| .+++|+|+||++|++||++++++ +|+++|+++|++|++.|++.++
T Consensus       248 ~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~  303 (305)
T TIGR01763       248 PCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCK  303 (305)
T ss_pred             EEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            887 779998 68999999999999999999998 9999999999999999998765

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.5e-58  Score=422.71  Aligned_cols=277  Identities=25%  Similarity=0.291  Sum_probs=237.9

Q ss_pred             CCCCcC-----eEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHH
Q 022546            3 LDPLVS-----SLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNI   73 (295)
Q Consensus         3 ~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~   73 (295)
                      +.++++     +|+|+|+++    ++|+++||+|+.....-.. ..+++.+++++|||+||+++|.|+++|++|.+++..
T Consensus        21 ~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~-~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~   99 (324)
T TIGR01758        21 RGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGV-VPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSK   99 (324)
T ss_pred             hccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCce-eccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHH
Confidence            456665     799999954    7899999999973211111 222244699999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccce-
Q 022546           74 NAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVN-  150 (295)
Q Consensus        74 n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~-  150 (295)
                      |++|++++++.|++++ |++++|++|||+|+||+++   ++.+| ++++++||+ |.|||+|||++||++++++|++|+ 
T Consensus       100 N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~  175 (324)
T TIGR01758       100 NVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN  175 (324)
T ss_pred             HHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeehHHHHHHHHHHHHhCCChhhceE
Confidence            9999999999999996 9999999999999999987   89998 666679999 999999999999999999999995 


Q ss_pred             EEEeeCCCCceeeeccccCcCC-C---CCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHH
Q 022546          151 VPVIGGHAGVTILPLFSQATPK-S---NNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC  220 (295)
Q Consensus       151 ~~viG~hg~~~~vp~~s~~~v~-~---~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai  220 (295)
                      ++||||||+ +++|+||+++++ +   .++    ++.+  ++++.+++++++++|++.+  +|++.|++|.++++++++|
T Consensus       176 ~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k--~~~t~~~ia~~~~~i~~ai  252 (324)
T TIGR01758       176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR--KLSSALSAAKAAVDQMHDW  252 (324)
T ss_pred             eEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Confidence            699999999 999999999998 6   333    2222  5789999999999999963  3589999999999999999


Q ss_pred             HcCcCCCCceeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          221 LMGLNGVPDIVECT-FVQSS-V--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       221 ~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      +++.+. +.++|++ +.+|+ |  |++++||+||++|++|++.+.++ +|+++|+++|++|++.|++.+++++
T Consensus       253 ~~~~~~-~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~s~~~lk~~~~~~~  323 (324)
T TIGR01758       253 VLGTPE-GTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLALTAKELEEERDEAL  323 (324)
T ss_pred             hcCCCC-CeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            954432 3689998 77999 8  48999999999997777776667 9999999999999999999998875

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=7.6e-58  Score=418.13  Aligned_cols=271  Identities=31%  Similarity=0.541  Sum_probs=243.0

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCC-----CHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM-----TRDDLFNI   73 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~-----~r~~~~~~   73 (295)
                      ..++ .+|+|+|+++  +.+.++|+.|...  ....++. .++|+ ++++|||+||+++|.++++|+     +|++++..
T Consensus        27 ~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~  103 (321)
T PTZ00082         27 LKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPL  103 (321)
T ss_pred             hCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHH
Confidence            4555 5599999988  7889999999742  2223333 23565 799999999999999999999     99999999


Q ss_pred             HHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEE
Q 022546           74 NAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVP  152 (295)
Q Consensus        74 n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~  152 (295)
                      |+++++++++.|++++|+||+|++|||+|++++.+   ++.+| +|++||||+ |.||++|+++++|+++++++++|+++
T Consensus       104 n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~---~~~sg-~p~~rviGlgt~lds~R~~~~la~~l~v~~~~v~~~  179 (321)
T PTZ00082        104 NAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL---QEHSG-LPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHAS  179 (321)
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHhcC-CChhhEEEecCcccHHHHHHHHHHHhCCCcccceee
Confidence            99999999999999999999999999999999886   78888 999999999 69999999999999999999999999


Q ss_pred             EeeCCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcC
Q 022546          153 VIGGHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMG  223 (295)
Q Consensus       153 viG~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~  223 (295)
                      |+||||+ +++|+||++++++.+         +++++++++.++++++|++|++.+ |||+|+||+|.++++++++|++|
T Consensus       180 viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-gkg~t~~~ia~a~~~i~~ail~d  257 (321)
T PTZ00082        180 VIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-GTGSAYFAPAAAAIEMAEAYLKD  257 (321)
T ss_pred             EEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHHHcC
Confidence            9999999 899999999997632         345568899999999999999975 78999999999999999999998


Q ss_pred             cCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          224 LNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       224 ~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                      ++   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       258 ~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa~~i~~~~~  318 (321)
T PTZ00082        258 KK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIKEVKRLEA  318 (321)
T ss_pred             CC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            65   588998 789998 67999999999999999999998 9999999999999999998765

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=4.8e-58  Score=418.26  Aligned_cols=270  Identities=28%  Similarity=0.421  Sum_probs=243.9

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ..++++++++|+|+++  +.++++|++|+... .....++  +| +++++|||+||++++.++++|++|++++.+|++++
T Consensus        20 ~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d-~~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~   96 (308)
T cd05292          20 LLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GD-YADCKGADVVVITAGANQKPGETRLDLLKRNVAIF   96 (308)
T ss_pred             HHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CC-HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence            4578899999999987  78999999998521 2234332  45 48899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|+|+++++|||+|+|++++   ++.+| ||++||||+ |.||++|+++++|+++++++++|+++|||||
T Consensus        97 ~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~~~~v~~~~v~~~viGeH  172 (308)
T cd05292          97 KEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEH  172 (308)
T ss_pred             HHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHHHHHHhCCCccceeceeeccC
Confidence            999999999999999999999999999987   89998 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          158 AGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |+ +++|+||++++++.+           +++++++++.+++++++++|++   +||+++|++|.++++++++|++|.+ 
T Consensus       173 g~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~~~~a~a~~~i~~ail~~~~-  247 (308)
T cd05292         173 GD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATYYAIGLALARIVEAILRDEN-  247 (308)
T ss_pred             CC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHHHHHHHHHHHcCCC-
Confidence            98 899999999987632           2234588999999999999999   5689999999999999999999864 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                        .++|++ +++|+| .+++|||+||+||++|+++++++ +||++|+++|++|++.|++.++
T Consensus       248 --~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~~~  306 (308)
T cd05292         248 --SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEAIE  306 (308)
T ss_pred             --cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence              588887 779998 57999999999999999999998 9999999999999999998776

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=3.3e-57  Score=414.58  Aligned_cols=276  Identities=27%  Similarity=0.365  Sum_probs=241.4

Q ss_pred             CCCCCcC-----eEEEEeCCC----chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546            2 KLDPLVS-----SLSLYDIAN----TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL   70 (295)
Q Consensus         2 ~~~~~~~-----ei~L~D~~~----~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~   70 (295)
                      ..+++++     ||+|+|+++    +.|+++|+.|+.++  .+++.   +.+++++++|||+||+++|.+++++++|.++
T Consensus        23 ~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l   99 (325)
T cd01336          23 AKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFKDVDVAILVGAMPRKEGMERKDL   99 (325)
T ss_pred             HhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHH
Confidence            3456664     999999954    68999999998622  23332   2466799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCcc
Q 022546           71 FNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAE  148 (295)
Q Consensus        71 ~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~  148 (295)
                      +..|++|++++++.|++++ |++++|++|||+|+||+++   ++.++.+|+++ ||+ |.||++||++++|+++++++++
T Consensus       100 ~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~gt~LDs~R~r~~la~~l~v~~~~  175 (325)
T cd01336         100 LKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTALTRLDHNRAKSQIALKLGVPVSD  175 (325)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEeeehHHHHHHHHHHHHHhCcChhh
Confidence            9999999999999999997 8999999999999999987   78865488877 888 9999999999999999999999


Q ss_pred             ce-EEEeeCCCCceeeeccccCcCC----CCCCC----HHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHH
Q 022546          149 VN-VPVIGGHAGVTILPLFSQATPK----SNNLS----DEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA  217 (295)
Q Consensus       149 v~-~~viG~hg~~~~vp~~s~~~v~----~~~~~----~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i  217 (295)
                      |+ .+||||||+ +++|+||+++++    +.++.    +++  ++++.+++++++++|++.+  +|+++||+|.++++++
T Consensus       176 v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~--~g~t~~~~a~~~~~i~  252 (325)
T cd01336         176 VKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKAR--KLSSAMSAAKAICDHV  252 (325)
T ss_pred             ceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHcc--ccchHHHHHHHHHHHH
Confidence            96 569999999 999999999997    64432    222  5899999999999999963  5799999999999999


Q ss_pred             HHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          218 DACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       218 ~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      ++|++|.+. +.++|++ +++|+|  ++++|||+||++|++||++++++ +|+++|+++|++|++.|+++++.++
T Consensus       253 ~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~l~~e~~~~~  325 (325)
T cd01336         253 HDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSREKIDATAKELVEEKETAL  325 (325)
T ss_pred             HHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            999998532 3588987 779998  48999999999999999999998 9999999999999999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=6.4e-57  Score=422.62  Aligned_cols=266  Identities=19%  Similarity=0.170  Sum_probs=234.1

Q ss_pred             eEEEEeCC--C--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546            9 SLSLYDIA--N--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC   82 (295)
Q Consensus         9 ei~L~D~~--~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~   82 (295)
                      .|+|+|++  .  ++|++|||+|++++  ..+.+++  ++ +++|+|||+||+++|.|+++||+|.+++..|++|+++++
T Consensus       156 ~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~--~~-~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g  232 (452)
T cd05295         156 SIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT--DL-DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYG  232 (452)
T ss_pred             EEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE--CC-HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence            59999994  4  89999999999732  2345443  33 799999999999999999999999999999999999999


Q ss_pred             HHHHhhCC--CeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCC
Q 022546           83 TAIANYCP--HALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAG  159 (295)
Q Consensus        83 ~~i~~~~p--~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~  159 (295)
                      +.|++++|  ++++|++|||+|++|+++   +++++++|++||||++.||++||+++||+++|+++++| +++||||||+
T Consensus       233 ~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~  309 (452)
T cd05295         233 PLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG  309 (452)
T ss_pred             HHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence            99999999  999999999999999987   89993399999999976889999999999999999999 6799999999


Q ss_pred             ceeeeccccCcCCC------------CCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHH
Q 022546          160 VTILPLFSQATPKS------------NNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL  221 (295)
Q Consensus       160 ~~~vp~~s~~~v~~------------~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~  221 (295)
                       ++||+||++++++            .++    .+++  .+++.+.++++++   .   +||+++||+|.|+++++++|+
T Consensus       310 -sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail  382 (452)
T cd05295         310 -NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS---S---LNHEAAISPAHAIATTLSYWY  382 (452)
T ss_pred             -ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHH
Confidence             9999999999965            222    2223  3567888888887   2   578999999999999999999


Q ss_pred             cCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          222 MGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       222 ~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      +|++.+ .++|++ +++|+|  |+|++||+||++|++|++.+.++ +|+++|+++|+.|+++|.++.+.++
T Consensus       383 ~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L-~L~e~E~~kL~~S~~eL~~E~~~~~  451 (452)
T cd05295         383 HGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL-ELSEILREVLKRITSDLIQEKLVAL  451 (452)
T ss_pred             hCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            998532 588887 789998  68999999999999999999998 9999999999999999999987764

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.5e-55  Score=400.98  Aligned_cols=270  Identities=34%  Similarity=0.568  Sum_probs=241.7

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ++++. +|+|+|+++  +.++++|+.|...  ....+.. .++| +++++|||+||+++|.|+++|++|.+++..|++++
T Consensus        19 ~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d-~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~   95 (300)
T cd01339          19 LKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTND-YEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIV   95 (300)
T ss_pred             hCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCC-HHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHH
Confidence            45667 999999987  6788999998642  1222332 2345 47899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++||++++|++|++++++|+++|+|+|
T Consensus        96 ~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s~-~~~~rviGlgt~lds~r~~~~la~~l~v~~~~v~~~v~G~h  171 (300)
T cd01339          96 KEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKASG-FPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGH  171 (300)
T ss_pred             HHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCHHHEEEecchHHHHHHHHHHHHHhCCCccceEEEEEeCC
Confidence            999999999999999999999999999987   78898 999999999 5999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546          158 AGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC  233 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~  233 (295)
                      |+ +++|+||++++++.+    +++++++++.++++++++++++.| |||+++|++|.++++++++|+.|++   .++|+
T Consensus       172 g~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~i~~ail~~~~---~i~~~  246 (300)
T cd01339         172 GD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAEMVEAILKDKK---RVLPC  246 (300)
T ss_pred             CC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHHcCCC---cEEEE
Confidence            99 899999999997643    344568999999999999999976 7799999999999999999999864   58898


Q ss_pred             E-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546          234 T-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI  285 (295)
Q Consensus       234 ~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~  285 (295)
                      + +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       247 s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         247 SAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             EEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            8 789998 56999999999999999999998 999999999999999999765

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=2e-55  Score=400.85  Aligned_cols=271  Identities=27%  Similarity=0.434  Sum_probs=240.4

Q ss_pred             CCCCCcCeEEEEeCCC----chhHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN----TPGVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA   75 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~----~~~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~   75 (295)
                      ...|..++|+|+|+++    +.+.++|++|+.  .+...+.+ .+.| ++++++||+||+++|.|+++|++|.+++..|+
T Consensus        21 ~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiViitag~p~~~~~~r~dl~~~n~   98 (309)
T cd05294          21 AKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVIITAGVPRKEGMSRLDLAKKNA   98 (309)
T ss_pred             HhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEEecCCCCCCCCCHHHHHHHHH
Confidence            3568889999999953    689999999873  22223332 2345 57899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEe
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVI  154 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~vi  154 (295)
                      ++++++++.|++++|++++|+++||+|++|+++   ++.+| +|++||||+ |.||++|++++||+++++++++|+++|+
T Consensus        99 ~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~---~~~~g-~~~~~viG~gt~LDs~R~~~~la~~l~v~~~~v~~~vi  174 (309)
T cd05294          99 KIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRII  174 (309)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CCHHHEeeccchHHHHHHHHHHHHHHCcChHHeEEEEE
Confidence            999999999999999999999999999999887   89999 999999999 7999999999999999999999999999


Q ss_pred             eCCCCceeeeccccCcCCCCCC------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          155 GGHAGVTILPLFSQATPKSNNL------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       155 G~hg~~~~vp~~s~~~v~~~~~------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      ||||+ +++|+||++++++.++      .+.+++++.++++++|++|++.   ||++.||+|.++++++++|++|++   
T Consensus       175 GeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~~a~~~~~ii~ail~~~~---  247 (309)
T cd05294         175 GEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYGPASAISNLVRTIANDER---  247 (309)
T ss_pred             ecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHHCCCC---
Confidence            99999 8999999999976432      2445789999999999999994   577899999999999999999975   


Q ss_pred             ceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          229 DIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       229 ~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                      .+++++ +++|+|  .+++++|+||++|++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       248 ~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~~  307 (309)
T cd05294         248 RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYTR  307 (309)
T ss_pred             eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            588887 778886  34899999999999999999998 9999999999999999998664

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=4.4e-54  Score=392.78  Aligned_cols=272  Identities=34%  Similarity=0.583  Sum_probs=242.3

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +.++. ||+|+|+++  +.|.++|+.|....  ...+.. .++|+ ++++|||+||+++|.|+++|++|.+++.+|++++
T Consensus        23 ~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~   99 (307)
T PRK06223         23 LKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIM   99 (307)
T ss_pred             hCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence            45666 999999987  78999999987421  122332 23565 7899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++||+++||++++++|++|+++|+|+|
T Consensus       100 ~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s~-~~~~~viG~gt~lds~r~~~~la~~l~v~~~~v~~~viGeh  175 (307)
T PRK06223        100 KDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKESG-FPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGH  175 (307)
T ss_pred             HHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCcccEEEeCCCcHHHHHHHHHHHHhCcChhhCcccEEcCC
Confidence            999999999999999999999999999987   78898 999999999 6999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546          158 AGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC  233 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~  233 (295)
                      |+ +++|+||++++++.+    ++++.++++.++++++++++++.+ +||++.|++|.++++++++|+.|.+   .++++
T Consensus       176 g~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~~~~ii~ail~~~~---~~~~~  250 (307)
T PRK06223        176 GD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAASIAEMVEAILKDKK---RVLPC  250 (307)
T ss_pred             CC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHHHHHHcCCC---cEEEE
Confidence            99 899999999987533    445557899999999999999964 6789999999999999999999864   57888


Q ss_pred             E-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          234 T-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       234 ~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      + +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       251 ~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  305 (307)
T PRK06223        251 SAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA  305 (307)
T ss_pred             EEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            7 789988 68999999999999999999998 99999999999999999988764

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.5e-50  Score=361.72  Aligned_cols=235  Identities=31%  Similarity=0.456  Sum_probs=212.6

Q ss_pred             CCC--CcCeEEEEeCCC--chhHHHhhhCCCCCC-eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            3 LDP--LVSSLSLYDIAN--TPGVAADVSHINSPA-QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         3 ~~~--~~~ei~L~D~~~--~~~~~~Dl~~~~~~~-~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      +.+  ...||+|+|+++  +++.++|++|+.... ..+.. .++|++++++|||+||+++|.++++|++|.+++.+|+++
T Consensus        20 ~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i   98 (263)
T cd00650          20 DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPI   98 (263)
T ss_pred             hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence            456  789999999987  789999999986432 23333 356788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      ++++++.|+++||+||+|++|||+|++|+++   +|++| +|++|+||+|.+|++|+++++|+++++++++|+++|||+|
T Consensus        99 ~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~sg-~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~h  174 (263)
T cd00650          99 VKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYSG-LPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEH  174 (263)
T ss_pred             HHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCchhEEEeecchHHHHHHHHHHHhCCCccceEEEEEEcC
Confidence            9999999999999999999999999999987   89998 9999999994499999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-Ee
Q 022546          158 AGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FV  236 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~  236 (295)
                      |+ +++|+||+++                                      +|.++++++++|++|++   .+++++ ++
T Consensus       175 g~-~~~~~~s~~~--------------------------------------~a~~~~~ii~ai~~~~~---~~~~v~v~~  212 (263)
T cd00650         175 GG-SQVPDWSTVR--------------------------------------IATSIADLIRSLLNDEG---EILPVGVRN  212 (263)
T ss_pred             CC-ceEeccccch--------------------------------------HHHHHHHHHHHHHcCCC---EEEEEEEEe
Confidence            99 8999999864                                      67899999999999853   578887 77


Q ss_pred             eCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546          237 QSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI  285 (295)
Q Consensus       237 ~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~  285 (295)
                      +|+|  +++++||+||++|++|+++++++ +|+++|+++|+.|++.++..+
T Consensus       213 ~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         213 NGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             CCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            9998  58999999999999999998997 999999999999999999764

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.1e-48  Score=331.05  Aligned_cols=277  Identities=28%  Similarity=0.374  Sum_probs=249.9

Q ss_pred             eEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022546            9 SLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTA   84 (295)
Q Consensus         9 ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~   84 (295)
                      .|+|+|+.+    .+|..|+|+||+++ .++....++|..++|+|.|+.|+.++.||++||+|.|++..|++|++..+..
T Consensus        37 iL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~A  115 (332)
T KOG1496|consen   37 ILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAA  115 (332)
T ss_pred             EEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHH
Confidence            589999987    68999999999864 5555555678899999999999999999999999999999999999999999


Q ss_pred             HHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCCcee
Q 022546           85 IANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTI  162 (295)
Q Consensus        85 i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~  162 (295)
                      +.+|+ |+.+|+|++||+|..+.++   .+++.++|.++|-.+|.||++|+..+||.++||+.++| ++++||+|+. ++
T Consensus       116 L~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQ  191 (332)
T KOG1496|consen  116 LEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQ  191 (332)
T ss_pred             HHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEeccccc-cc
Confidence            99998 9999999999999999887   79999999999999999999999999999999999999 7999999998 99


Q ss_pred             eeccccCcCCCC--------CCCHHHH--HHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeE
Q 022546          163 LPLFSQATPKSN--------NLSDEEI--KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVE  232 (295)
Q Consensus       163 vp~~s~~~v~~~--------~~~~~~~--~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~  232 (295)
                      +|+..++++...        .+.|+.|  .++.+.|+++|..+++.|  |.++.+|.|.+++++++.|+.+++.+.++.+
T Consensus       192 yPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ar--k~SSA~SaA~aacDhi~dw~~gTpeG~fvSm  269 (332)
T KOG1496|consen  192 YPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKAR--KLSSAMSAAKAACDHIRDWWFGTPEGTFVSM  269 (332)
T ss_pred             CCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhh--hhhhhhhHHHhHhhhhhheecCCCCccEEEE
Confidence            999999998531        2445555  689999999999999974  5689999999999999999999997754444


Q ss_pred             EEEeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          233 CTFVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       233 ~~~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      ..+++|.|  |++..||+||++ ++|-|++++..+++++-+++++.++++|.++.+.+...++
T Consensus       270 gV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~~t~~EL~eEkd~a~~~l~  331 (332)
T KOG1496|consen  270 GVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMDLTAKELKEEKDLAYSCLS  331 (332)
T ss_pred             eeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhhhhHHHHHHhHHHHHHhhc
Confidence            45889998  899999999999 7899999986699999999999999999999999998875

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=1.1e-36  Score=256.17  Aligned_cols=160  Identities=36%  Similarity=0.537  Sum_probs=145.7

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC----------CCCHHHHHHHHHHhhchhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN----------NLSDEEIKALTKRTQDGGTEVV  196 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~----------~~~~~~~~~i~~~v~~~~~~i~  196 (295)
                      |.||++||+++||+++|++|++++++||||||+ ++||+||++++++.          .+++++++++.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            689999999999999999999999999999999 89999999999752          2556778999999999999999


Q ss_pred             hhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-C-Cc-cEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 022546          197 EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-T-EL-PFFASKVRLGKNGADEVLGLGPLSDYEKQ  272 (295)
Q Consensus       197 ~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~-~~-~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~  272 (295)
                      +.| + |+++||+|.++++++++|++|.+   .++|++ +.+|+| . ++ +|||+||++|++|++++++.++|+++|++
T Consensus        80 ~~k-~-g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAK-G-GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHH-S-SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eec-c-ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            975 2 89999999999999999999984   588887 779998 3 44 99999999999999999993399999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 022546          273 GLESLKPELKASIEKGIQFA  292 (295)
Q Consensus       273 ~l~~s~~~l~~~~~~~~~~~  292 (295)
                      +|++|++.|++.++++++|+
T Consensus       155 ~l~~sa~~l~~~i~~~~~f~  174 (174)
T PF02866_consen  155 KLKESAKELKKEIEKGLEFV  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999986

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.97  E-value=2.2e-30  Score=244.63  Aligned_cols=263  Identities=18%  Similarity=0.145  Sum_probs=182.2

Q ss_pred             CcCeEEEEeCCC-chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEcC---CC---------CCCCC-----
Q 022546            6 LVSSLSLYDIAN-TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIPA---GV---------PRKPG-----   64 (295)
Q Consensus         6 ~~~ei~L~D~~~-~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~~---g~---------~~~~g-----   64 (295)
                      -.+||+|+|+++ ....+..+.+..   ....++.. .|+|+++||+||||||.+.   |.         |.++|     
T Consensus        28 ~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~-~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqe  106 (425)
T cd05197          28 PISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFE-KTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQE  106 (425)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEE-EeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccccc
Confidence            358999999987 333333333221   12244443 3578999999999999953   32         23443     


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhh
Q 022546           65 ---MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK  141 (295)
Q Consensus        65 ---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~  141 (295)
                         .-....+.+|+++++++++.|+++||+||+||+|||+|++|+++   ++.   +|+.||||+|.. +.|+++.+|+.
T Consensus       107 T~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~---~~~---~p~~rviG~c~~-~~r~~~~ia~~  179 (425)
T cd05197         107 TVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV---RRY---VPPEKAVGLCNV-PIGVMEIVAKL  179 (425)
T ss_pred             ccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH---HHh---CCCCcEEEECCC-HHHHHHHHHHH
Confidence               23788999999999999999999999999999999999999987   665   367899999877 89999999999


Q ss_pred             cCCCCccceEEEee-CCCCceeeeccccCcCCCC----------------------------------------------
Q 022546          142 VNVPVAEVNVPVIG-GHAGVTILPLFSQATPKSN----------------------------------------------  174 (295)
Q Consensus       142 l~v~~~~v~~~viG-~hg~~~~vp~~s~~~v~~~----------------------------------------------  174 (295)
                      +|+++++|+++++| |||.     .||+.++++.                                              
T Consensus       180 lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl  254 (425)
T cd05197         180 LGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKSKDWKTENPFVDQLSPAAIDFYRFYGVLPNPYL  254 (425)
T ss_pred             hCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccCccccccccccccccchHHHHHHhCCCcccCCc
Confidence            99999999999999 9983     3444433210                                              


Q ss_pred             -CC--CH----HHHHH-----------------HHHHhhchh--hhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          175 -NL--SD----EEIKA-----------------LTKRTQDGG--TEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       175 -~~--~~----~~~~~-----------------i~~~v~~~~--~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                       +|  .+    ++.++                 +.+..+...  ...-.. ..++...|+  ..++++++||++|.+   
T Consensus       255 ~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~-~~r~~~~~~--e~a~~ii~ai~~~~~---  328 (425)
T cd05197         255 RYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVEL-IKRGGRKYS--EAAIPLIRALLNDNG---  328 (425)
T ss_pred             cccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhh-hhcCCcccH--HHHHHHHHHHHcCCC---
Confidence             00  00    00000                 111111000  000000 011334455  899999999999975   


Q ss_pred             ceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          229 DIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       229 ~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      ..+.++ .++|.+   |+|.++++||+++++|+.++ ..++|++..+++++.-...-+-.++.+
T Consensus       329 ~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~-~vg~lp~~~~~Li~~~~~~e~l~veAa  391 (425)
T cd05197         329 ARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPI-KVGPLDRFVKGLLRQRKMRERLALEAF  391 (425)
T ss_pred             eEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            355555 568875   88999999999999999997 556999988887776544444344433

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.97  E-value=2.5e-29  Score=236.98  Aligned_cols=264  Identities=18%  Similarity=0.220  Sum_probs=181.1

Q ss_pred             CcCeEEEEeCC-C-chhHHH----hhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC-------------
Q 022546            6 LVSSLSLYDIA-N-TPGVAA----DVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT-------------   66 (295)
Q Consensus         6 ~~~ei~L~D~~-~-~~~~~~----Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~-------------   66 (295)
                      ..+||+|+|++ + ....+.    .+..... +.++.. .|+|+++|++||||||++.+....++++             
T Consensus        28 ~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~~v~-~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g  105 (419)
T cd05296          28 PVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVH-LTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIG  105 (419)
T ss_pred             CCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCeEEE-EeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc
Confidence            46899999999 5 322232    3322222 233433 3578999999999999987665444433             


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHH
Q 022546           67 -------RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYA  139 (295)
Q Consensus        67 -------r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la  139 (295)
                             ....+.+|+++++++++.|+++||+||+|++|||+|++|+++   +|.+    +.||||+|..+ .|+++.+|
T Consensus       106 qET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---~k~~----~~rviGlc~~~-~r~~~~ia  177 (419)
T cd05296         106 QETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---LRHT----GDRVIGLCNVP-IGLQRRIA  177 (419)
T ss_pred             ccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---HHhc----cCCEEeeCCcH-HHHHHHHH
Confidence                   355689999999999999999999999999999999999986   5654    68999999774 79999999


Q ss_pred             hhcCCCCccceEEEee-CCCC---------ceeeec----------------cccCcC---CC-C-----C--CCHHHH-
Q 022546          140 GKVNVPVAEVNVPVIG-GHAG---------VTILPL----------------FSQATP---KS-N-----N--LSDEEI-  181 (295)
Q Consensus       140 ~~l~v~~~~v~~~viG-~hg~---------~~~vp~----------------~s~~~v---~~-~-----~--~~~~~~-  181 (295)
                      +.+|+++++|+++++| ||..         ++.+|.                |+..-.   +. +     +  +.++.. 
T Consensus       178 ~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~  257 (419)
T cd05296         178 ELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFGPELLRALGALPNEYLRYYYQTDEALE  257 (419)
T ss_pred             HHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccchHHHHHHhcCCcccchHHHHCCcHHHHH
Confidence            9999999999999999 8876         233331                111000   00 0     0  111111 


Q ss_pred             -------------HHHHHHh----hchh----hhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCC
Q 022546          182 -------------KALTKRT----QDGG----TEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSS  239 (295)
Q Consensus       182 -------------~~i~~~v----~~~~----~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~  239 (295)
                                   +++.+++    ++..    .+.+.   .++.+.||  ..++++++||++|.+   ..+.++ .++|.
T Consensus       258 ~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~---~r~g~~y~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~  329 (419)
T cd05296         258 EILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELE---KRGGAGYS--EAALALISAIYNDKG---DIHVVNVRNNGA  329 (419)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHhccccccChHhhH---hhcCcchH--HHHHHHHHHHhcCCC---cEEEEECCCCCC
Confidence                         1111111    1110    01111   22344555  899999999999875   344455 56887


Q ss_pred             C---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          240 V---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       240 ~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      +   |+|.++++||.++++|+.++ ..++|++..+++++.-...=+-.++.+
T Consensus       330 I~~Lp~d~vVEvp~~v~~~G~~P~-~vg~lP~~~~~l~~~~~~~e~l~veAa  380 (419)
T cd05296         330 IPGLPDDAVVEVPCVVDADGAHPL-PVGPLPPAILGLIQQVKAYERLTIEAA  380 (419)
T ss_pred             CCCCCCCCEEEEeEEEcCCCceec-cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5   78999999999999999997 566999999888766544433334433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.96  E-value=1e-29  Score=206.35  Aligned_cols=118  Identities=40%  Similarity=0.637  Sum_probs=105.2

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCCC--eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSPA--QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~--~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      |+++++++||+|+|+++  ++|+++||+|+.++.  ......  .+ +++++|||+||+++|.++++|++|.+++..|++
T Consensus        20 l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~   96 (141)
T PF00056_consen   20 LAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS--GD-YEALKDADIVVITAGVPRKPGMSRLDLLEANAK   96 (141)
T ss_dssp             HHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE--SS-GGGGTTESEEEETTSTSSSTTSSHHHHHHHHHH
T ss_pred             HHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc--cc-ccccccccEEEEeccccccccccHHHHHHHhHh
Confidence            35679999999999996  899999999986433  344433  33 699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +++++++.|++++|+++++++|||+|+||+++   ++++| +|++|+||
T Consensus        97 i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~---~~~s~-~~~~kviG  141 (141)
T PF00056_consen   97 IVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA---QKYSG-FPPNKVIG  141 (141)
T ss_dssp             HHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH---HHHHT-SSGGGEEE
T ss_pred             HHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH---HHhhC-cCcccCcC
Confidence            99999999999999999999999999999987   89999 99999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15076 alpha-galactosidase; Provisional

Probab=99.96  E-value=1.2e-27  Score=226.81  Aligned_cols=267  Identities=15%  Similarity=0.141  Sum_probs=178.9

Q ss_pred             CCCcC-eEEEEeCCC--ch-hHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCC-CCCC------------
Q 022546            4 DPLVS-SLSLYDIAN--TP-GVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVP-RKPG------------   64 (295)
Q Consensus         4 ~~~~~-ei~L~D~~~--~~-~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~-~~~g------------   64 (295)
                      .++.. ||+|+|+++  ++ +..+ +.+..  ....++.. .|+|+++|++||||||++++.+ ++++            
T Consensus        26 ~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G  103 (431)
T PRK15076         26 PALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYG  103 (431)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcC
Confidence            44554 999999987  32 3333 44321  12223332 3568889999999999998876 4434            


Q ss_pred             --CCHHHH--------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecc--hhhHH
Q 022546           65 --MTRDDL--------FNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT--TLDVV  132 (295)
Q Consensus        65 --~~r~~~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t--~ld~~  132 (295)
                        ++|.+.        +.+|+++++++++.|+++||+||+|++|||+|++|+++   +   + +|+.||||+|  .+|+.
T Consensus       104 ~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~---~---~-~~~~rviG~c~~~~~~~  176 (431)
T PRK15076        104 LRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM---N---R-YPGIKTVGLCHSVQGTA  176 (431)
T ss_pred             CeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH---h---c-CCCCCEEEECCCHHHHH
Confidence              455555        99999999999999999999999999999999999876   3   4 8889999997  57774


Q ss_pred             HHHHHHHhhcCCCCccceEEEee-CCCC---------ceeeecccc---C-------cCC-------C------------
Q 022546          133 RAKTFYAGKVNVPVAEVNVPVIG-GHAG---------VTILPLFSQ---A-------TPK-------S------------  173 (295)
Q Consensus       133 R~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s~---~-------~v~-------~------------  173 (295)
                         +.+|+.+|+++++|++++.| ||..         ++.+|....   .       .+.       +            
T Consensus       177 ---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (431)
T PRK15076        177 ---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTRCQDKVRYEMLKRFGYFVTESSEHFAE  253 (431)
T ss_pred             ---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCchhcccccHHHHHHhCCCcccchhhhhh
Confidence               88999999999999999999 5554         122332100   0       000       0            


Q ss_pred             --CCC----CHHHHHHHHH----Hh------hchhhhhh-hhccCCCcch--hhHHHHHHHHHHHHHcCcCCCCceeEEE
Q 022546          174 --NNL----SDEEIKALTK----RT------QDGGTEVV-EAKAGKGSAT--LSMAYAGAVFADACLMGLNGVPDIVECT  234 (295)
Q Consensus       174 --~~~----~~~~~~~i~~----~v------~~~~~~i~-~~~~~kg~~~--~s~a~a~~~~i~ai~~~~~~~~~v~~~~  234 (295)
                        +++    .++..+.+..    ..      .....+.+ +.+.  |.+.  -..+..++++++||.+|.+   ..+.++
T Consensus       254 y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~a~~ii~ai~~~~~---~~~~vn  328 (431)
T PRK15076        254 YVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN--AERIEIKRSREYASTIIEAIETGEP---SVIYGN  328 (431)
T ss_pred             hhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC--CCccccccchHHHHHHHHHHhcCCc---eEEEEE
Confidence              011    2222222211    00      01111111 1111  2111  1134889999999999875   355555


Q ss_pred             -EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          235 -FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       235 -~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                       .++|.+   |+|.++++||.++++|+.++ ..++|++..+++++.-...-+-.++.+
T Consensus       329 v~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~~g~lP~~~~~l~~~~~~~e~l~veAa  385 (431)
T PRK15076        329 VRNNGLIDNLPQGCCVEVPCLVDRNGIQPT-KVGDLPPQLAALNRTNINVQELTVEAA  385 (431)
T ss_pred             CCCCCcCCCCCCCCEEEEeEEEcCCcceee-ecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             568875   88999999999999999997 456999999998776655444444444

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.96  E-value=1e-26  Score=220.07  Aligned_cols=271  Identities=17%  Similarity=0.184  Sum_probs=180.5

Q ss_pred             CcCeEEEEeCCC-chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEc---CCC---------CCCCC-----
Q 022546            6 LVSSLSLYDIAN-TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIP---AGV---------PRKPG-----   64 (295)
Q Consensus         6 ~~~ei~L~D~~~-~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~---~g~---------~~~~g-----   64 (295)
                      -.+||+|+|+++ ....+..+.+..   ....+++. .|+|+.+|++||||||.+   +|.         |.++|     
T Consensus        28 ~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~-~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqE  106 (437)
T cd05298          28 PLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFV-YTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQE  106 (437)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEE-EECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceec
Confidence            358999999998 333444443321   12244443 357899999999999995   342         23343     


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhh
Q 022546           65 ---MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGK  141 (295)
Q Consensus        65 ---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~  141 (295)
                         .-....+.||+++++++++.|+++||+||+|++|||+|++|+++   ++.   +|+.||||+|+... -++..+|+.
T Consensus       107 T~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---~~~---~~~~kviGlC~~~~-~~~~~la~~  179 (437)
T cd05298         107 TCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---RRL---FPNARILNICDMPI-AIMDSMAAI  179 (437)
T ss_pred             CccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHH---CCCCCEEEECCcHH-HHHHHHHHH
Confidence               23688999999999999999999999999999999999999986   554   67889999998754 578899999


Q ss_pred             cCCCCccceEEEee-CCCC----------ceeeeccc----c----------C---c-------------------CCCC
Q 022546          142 VNVPVAEVNVPVIG-GHAG----------VTILPLFS----Q----------A---T-------------------PKSN  174 (295)
Q Consensus       142 l~v~~~~v~~~viG-~hg~----------~~~vp~~s----~----------~---~-------------------v~~~  174 (295)
                      ||+++++++..+.| ||..          ++..|...    .          .   .                   +...
T Consensus       180 lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~  259 (437)
T cd05298         180 LGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNT  259 (437)
T ss_pred             hCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCc
Confidence            99999999999999 4432          12333211    0          0   0                   0000


Q ss_pred             ---C-C-CHHHHHHHH-------HHhhchhhhhhhhc-----cCC--Ccchh--hHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546          175 ---N-L-SDEEIKALT-------KRTQDGGTEVVEAK-----AGK--GSATL--SMAYAGAVFADACLMGLNGVPDIVEC  233 (295)
Q Consensus       175 ---~-~-~~~~~~~i~-------~~v~~~~~~i~~~~-----~~k--g~~~~--s~a~a~~~~i~ai~~~~~~~~~v~~~  233 (295)
                         + + +++..+++.       +.+.+...++++..     .++  .....  ..|.+++++++||++|++   .++++
T Consensus       260 y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ya~~a~~ii~aI~~d~~---~~~~v  336 (437)
T cd05298         260 YLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFHVDVHGEYIVDLAASIAYNTK---ERFLV  336 (437)
T ss_pred             hhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhhhccchHHHHHHHHHHHHcCCC---eEEEE
Confidence               0 0 111001100       00111111110000     000  00110  145899999999999875   57778


Q ss_pred             E-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          234 T-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       234 ~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      + .++|.|   ++|+++|+||+||++|+.++ ..++|++...++++.-...-+-.++.+
T Consensus       337 nv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi-~vg~lP~~~~~l~~~~~~~e~l~veAa  394 (437)
T cd05298         337 IVENNGAIPNLPDDAMVEVPAYIGSNGPEPL-VVGKIPTFYKGLMEQQVAYEKLLVEAY  394 (437)
T ss_pred             EeecCCccCCCCCCcEEEEEEEEeCCCceec-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7 678886   68999999999999999997 456999999998776655544444444

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.5e-24  Score=201.52  Aligned_cols=268  Identities=17%  Similarity=0.169  Sum_probs=180.2

Q ss_pred             cCeEEEEeCCC-chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEcC---C---------CCCCCC---C--
Q 022546            7 VSSLSLYDIAN-TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIPA---G---------VPRKPG---M--   65 (295)
Q Consensus         7 ~~ei~L~D~~~-~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~~---g---------~~~~~g---~--   65 (295)
                      .+||+|+|+++ ....+.++.+..   ..+.+++.. |+|+++||+|||||+.+.   |         .|.|+|   +  
T Consensus        32 ~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~-ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET  110 (442)
T COG1486          32 VRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEA-TTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQET  110 (442)
T ss_pred             cceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEE-ecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCcccccc
Confidence            57999999988 555555555431   122344443 468999999999999953   3         244544   2  


Q ss_pred             ---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhc
Q 022546           66 ---TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKV  142 (295)
Q Consensus        66 ---~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l  142 (295)
                         .......|++|++.+||+.|+++||+||++++|||+.++|+++   .++   +|..|++|+|+... -....+|+.|
T Consensus       111 ~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv---~r~---~~~~K~VGlCh~~~-g~~~~lAe~L  183 (442)
T COG1486         111 NGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV---RRL---YPKIKIVGLCHGPI-GIAMELAEVL  183 (442)
T ss_pred             ccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH---HHh---CCCCcEEeeCCchH-HHHHHHHHHh
Confidence               3678889999999999999999999999999999999999986   564   55449999998743 5688999999


Q ss_pred             CCCC-ccceEEEee-CCCC---------ceeee-----------------------ccccCcC--CC---C-------CC
Q 022546          143 NVPV-AEVNVPVIG-GHAG---------VTILP-----------------------LFSQATP--KS---N-------NL  176 (295)
Q Consensus       143 ~v~~-~~v~~~viG-~hg~---------~~~vp-----------------------~~s~~~v--~~---~-------~~  176 (295)
                      |+++ ++++.-+.| ||..         ....|                       .|.....  +.   +       ++
T Consensus       184 ~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  263 (442)
T COG1486         184 GLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYY  263 (442)
T ss_pred             CCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCccccccccCcchHHHHHHhCcCcccCcchhhhee
Confidence            9975 999999999 4433         11111                       1111100  00   0       00


Q ss_pred             CHHH----HHHH------HHHhhchhhhhhhhc------------cCCCcc--hhhHHHHHHHHHHHHHcCcCCCCceeE
Q 022546          177 SDEE----IKAL------TKRTQDGGTEVVEAK------------AGKGSA--TLSMAYAGAVFADACLMGLNGVPDIVE  232 (295)
Q Consensus       177 ~~~~----~~~i------~~~v~~~~~~i~~~~------------~~kg~~--~~s~a~a~~~~i~ai~~~~~~~~~v~~  232 (295)
                      +...    ..++      .+.++++..+.++.+            ..++.+  .|+  .+++.++.||++|++   .++.
T Consensus       264 ~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--e~a~~ii~Ai~~~~~---~~~~  338 (442)
T COG1486         264 PYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKRIGAGKYSS--EYASNIINAIENNKP---SRIY  338 (442)
T ss_pred             hHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhcCCcccccH--HHHHHHHHHHhcCCc---eEEE
Confidence            0000    0000      111111111111110            112233  455  888999999999976   3555


Q ss_pred             EE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          233 CT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       233 ~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      ++ .++|.+   |+|.++++||+++++|+.++.. +.|++..+++++.....-+-.++.+
T Consensus       339 vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~~i~~e~l~veA~  397 (442)
T COG1486         339 VNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHTNINVEELTVEAA  397 (442)
T ss_pred             EEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            65 578875   8999999999999999999765 5999999998888766555444443

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.93  E-value=4.7e-24  Score=202.41  Aligned_cols=264  Identities=16%  Similarity=0.149  Sum_probs=179.7

Q ss_pred             CeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCH--------------
Q 022546            8 SSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTR--------------   67 (295)
Q Consensus         8 ~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r--------------   67 (295)
                      .+|+|+|+++  ++....++.+..    .+.+++   .|+|++++++|||+||++.+....++.++              
T Consensus        30 ~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~---~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~  106 (423)
T cd05297          30 STIALMDIDEERLETVEILAKKIVEELGAPLKIE---ATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTV  106 (423)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE---EeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeec
Confidence            4999999987  555556655432    223444   34688899999999999887544444333              


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHH
Q 022546           68 --------DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYA  139 (295)
Q Consensus        68 --------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la  139 (295)
                              .....+|++++.++++.++++||++|++++|||++++|+++   +|.++    .|+||+|.. +.|++..+|
T Consensus       107 ~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---~k~~~----~rviG~c~~-~~~~~~~~a  178 (423)
T cd05297         107 GDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---NRYTP----IKTVGLCHG-VQGTAEQLA  178 (423)
T ss_pred             cCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---HHhCC----CCEEEECCc-HHHHHHHHH
Confidence                    77889999999999999999999999999999999999987   67665    699999865 789999999


Q ss_pred             hhcCCCCccceEEEee-CCCC---------ceeeeccc-----------cCc-CC-------C--C------------CC
Q 022546          140 GKVNVPVAEVNVPVIG-GHAG---------VTILPLFS-----------QAT-PK-------S--N------------NL  176 (295)
Q Consensus       140 ~~l~v~~~~v~~~viG-~hg~---------~~~vp~~s-----------~~~-v~-------~--~------------~~  176 (295)
                      +.+|+++++|+++++| ||..         ++.+|...           ... +.       +  +            ++
T Consensus       179 ~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~  258 (423)
T cd05297         179 KLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSPVRFDMYRRYGLFPTESSEHLSEYVPHY  258 (423)
T ss_pred             HHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcccchHHHHHHcCCcccCcchhhhhhcccc
Confidence            9999999999999999 5544         12333211           111 00       0  0            00


Q ss_pred             --CHHHHHH------------------HHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-E
Q 022546          177 --SDEEIKA------------------LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-F  235 (295)
Q Consensus       177 --~~~~~~~------------------i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~  235 (295)
                        .++....                  ...........-.......+...++  ..++++++||.+|.+   ..+.++ .
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~ai~~~~~---~~~~vnv~  333 (423)
T cd05297         259 RKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSG--EYASPIIEALVTGKP---RRINGNVP  333 (423)
T ss_pred             ccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhccccccch--HHHHHHHHHHhcCCc---eEEEEECC
Confidence              1011111                  1111110000000000001122233  789999999999865   355555 5


Q ss_pred             eeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          236 VQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       236 ~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      ++|.+   |+|.++++||.++++|+.++ ..++|++..+++++.-...-+-.++.+
T Consensus       334 N~G~I~~Lp~d~vVEvp~~v~~~G~~p~-~~g~lp~~~~~l~~~~~~~e~l~veA~  388 (423)
T cd05297         334 NNGLIPNLPDDVVVEVPALVDRNGIHPE-KIGPLPPQLAALIRPRINVQELAVEAA  388 (423)
T ss_pred             CCCCCCCCCCCcEEEEeeEEcCCCceec-ccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            68875   88999999999999999997 557999999988777655544444443

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.77  E-value=2.5e-18  Score=144.05  Aligned_cols=128  Identities=20%  Similarity=0.213  Sum_probs=93.1

Q ss_pred             cCeEEEEeCCC-chhHHH----hhhCCC-CCCeEEEeeCCCchhhhcCCCcEEEEcCC------------CCCCCCCC--
Q 022546            7 VSSLSLYDIAN-TPGVAA----DVSHIN-SPAQVEGYAGEEQLGKALEGSDVVIIPAG------------VPRKPGMT--   66 (295)
Q Consensus         7 ~~ei~L~D~~~-~~~~~~----Dl~~~~-~~~~v~~~~~t~d~~~al~daDiVvi~~g------------~~~~~g~~--   66 (295)
                      .+||+|+|+++ ....+.    .+.... .+.++..   |+|+++|++|||+||.+..            .|.++|..  
T Consensus        28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~  104 (183)
T PF02056_consen   28 GSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGT  104 (183)
T ss_dssp             EEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-B
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccc
Confidence            46999999997 333333    332222 2345443   5789999999999999654            24555421  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHH
Q 022546           67 --------RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFY  138 (295)
Q Consensus        67 --------r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~l  138 (295)
                              ....+.|++|.+.++++.|+++|||||++|+|||+.++|+++   .+.   +|..|++|+|+.. .-+...+
T Consensus       105 ~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---~r~---~~~~k~vGlCh~~-~~~~~~l  177 (183)
T PF02056_consen  105 IQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---SRY---TPKIKVVGLCHGP-QGTRRQL  177 (183)
T ss_dssp             TTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---HHH---STTSEEEEE-SHH-HHHHHHH
T ss_pred             cccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---HHh---CCCCCEEEECCCH-HHHHHHH
Confidence                    688999999999999999999999999999999999999886   565   4457999999875 4677888


Q ss_pred             HhhcCC
Q 022546          139 AGKVNV  144 (295)
Q Consensus       139 a~~l~v  144 (295)
                      |+.||+
T Consensus       178 a~~L~~  183 (183)
T PF02056_consen  178 AKLLGM  183 (183)
T ss_dssp             HHHHT-
T ss_pred             HHHhCc
Confidence            998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=97.20  E-value=0.0033  Score=55.15  Aligned_cols=78  Identities=13%  Similarity=0.148  Sum_probs=51.6

Q ss_pred             CcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 022546          203 GSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK  278 (295)
Q Consensus       203 g~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~  278 (295)
                      |+..|+  .   .++.+|.+|.+   .++.++ .++|.+   |+|.++++||+|+++|+.++ ..++|++..+++++...
T Consensus       134 ~~~~~a--~---~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~-~~g~lP~~~~~li~~~~  204 (232)
T PF11975_consen  134 GSGEYA--E---AAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPV-AVGPLPPAIAGLIQQVK  204 (232)
T ss_dssp             TTSCHH--H---HHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--SB---HHHHHHHHHHH
T ss_pred             cccchH--H---HHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEec-cCCCCCHHHHHHHHHHH
Confidence            455555  4   45555577754   355565 568875   78999999999999999995 55699999999887766


Q ss_pred             HHHHHHHHHHh
Q 022546          279 PELKASIEKGI  289 (295)
Q Consensus       279 ~~l~~~~~~~~  289 (295)
                      ..-+-.++.++
T Consensus       205 ~~e~L~veAa~  215 (232)
T PF11975_consen  205 AYERLTVEAAL  215 (232)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            65555555443

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.94  E-value=6.8  Score=37.05  Aligned_cols=63  Identities=22%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             CCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--cCCccchHHHH
Q 022546           40 EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMI--SNPVNSTVPIA  108 (295)
Q Consensus        40 t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNP~d~~t~~~  108 (295)
                      |+|+++|+++||+++|+-|.|.++.-+      .+...+...++.|.+..+...+||+  |=|+.....+-
T Consensus        67 Ttd~~~a~~~adv~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          67 TTDYEEAVKDADVVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             EcCHHHHHhcCCEEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            568899999999999998888766321      2246677777777777665344444  66777766654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=89.52  E-value=4.9  Score=34.61  Aligned_cols=76  Identities=20%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             CeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546            8 SSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL   81 (295)
Q Consensus         8 ~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i   81 (295)
                      .++.++|.++  +.....++.+..    ....+..   + +..++++++|+||++...                ..+.++
T Consensus        25 ~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVilavp~----------------~~~~~~   84 (219)
T TIGR01915        25 NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVILAVPW----------------DHVLKT   84 (219)
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEEECCH----------------HHHHHH
Confidence            5788998865  333333332211    1112222   1 236789999999997531                112233


Q ss_pred             HHHHHhhCCCeEEEEecCCccc
Q 022546           82 CTAIANYCPHALVNMISNPVNS  103 (295)
Q Consensus        82 ~~~i~~~~p~a~viv~tNP~d~  103 (295)
                      ++.+...-++.++|-++||.+.
T Consensus        85 l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        85 LESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHHhccCCEEEEeccCcee
Confidence            3333333234678899999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.46  E-value=4.7  Score=36.31  Aligned_cols=65  Identities=17%  Similarity=0.280  Sum_probs=37.0

Q ss_pred             CchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEecCCccchHHHHHHHHHHhCCCC
Q 022546           41 EQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKKAGTYD  119 (295)
Q Consensus        41 ~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~sg~~~  119 (295)
                      +|+.+++++||+||.+..              .+....+++...+.++.+ ++++  ++|.......-   +.+... . 
T Consensus        76 ~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~~---~~~~~~-~-  134 (287)
T PRK08293         76 TDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPSQ---FAEATG-R-  134 (287)
T ss_pred             CCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHHH---HHhhcC-C-
Confidence            567778999999999752              113444555556666664 5433  45655443321   233332 2 


Q ss_pred             CCCeeec
Q 022546          120 EKKLFGV  126 (295)
Q Consensus       120 ~~kviG~  126 (295)
                      +.|++|+
T Consensus       135 ~~r~vg~  141 (287)
T PRK08293        135 PEKFLAL  141 (287)
T ss_pred             cccEEEE
Confidence            4577775

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=81.94  E-value=7.2  Score=35.05  Aligned_cols=89  Identities=19%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             CCCCCcCeEEEEeCCCchhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCC-CCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIANTPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG-MTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g-~~r~~~~~~n~~i~   78 (295)
                      ..+|-..+++.+|+........++.+...  ...-..+ ..+++.++++++|+|+-++....-.+ .....+..-|+.--
T Consensus        18 l~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~-d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT   96 (280)
T PF01073_consen   18 LERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDIT-DPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGT   96 (280)
T ss_pred             HHCCCceEEEEcccccccccchhhhcccceeEEEeccc-cHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHH
Confidence            34555788999998652222123332211  1111111 23467899999999999887543333 45777899999999


Q ss_pred             HHHHHHHHhhCCC
Q 022546           79 KSLCTAIANYCPH   91 (295)
Q Consensus        79 ~~i~~~i~~~~p~   91 (295)
                      +.+.+.+.+.+-+
T Consensus        97 ~nvl~aa~~~~Vk  109 (280)
T PF01073_consen   97 RNVLEAARKAGVK  109 (280)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999987543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-107
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-107
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		9e-89
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-88
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		4e-76
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		3e-74
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		3e-74
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		4e-73
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		8e-22
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		7e-21
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		5e-20
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		1e-19
1guz_A	310	Structural Basis For Thermophilic Protein Stability		2e-19
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		2e-19
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-19
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-19
1guy_A	309	Structural Basis For Thermophilic Protein Stability		4e-19
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		5e-19
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		7e-18
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		1e-13
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		3e-13
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		4e-13
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		4e-13
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		1e-12
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-12
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-12
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-12
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		4e-12
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		4e-12
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-11
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-11
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		9e-11
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		9e-11
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		9e-11
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		1e-10
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-10
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-10
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-10
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		3e-10
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		4e-10
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		4e-10
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		5e-10
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		6e-10
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		8e-10
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		8e-10
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		1e-09
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		3e-09
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		4e-09
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		9e-09
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-08
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		2e-08
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		2e-07
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		3e-07
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		3e-07
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		1e-06
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		1e-06
1ldb_A	317	Structure Determination And Refinement Of Bacillus		1e-06
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-06
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		2e-06
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		2e-06
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		5e-06
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		5e-06
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		7e-06
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		7e-06
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		8e-06
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		1e-05
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		2e-05
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		4e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-04
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		3e-04
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-04
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-04
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		6e-04
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		6e-04
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		6e-04
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		8e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/291 (65%), Positives = 220/291 (75%), Gaps = 1/291 (0%)
Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL  AL G D++I+PAGVP
Sbjct: 64  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 123
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLF INAGIVK+LC  IA  CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD 
Sbjct: 124 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDP 183
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+L GVT LDVVRA TF A              +GGHAGVTILPL SQ  P S + + EE
Sbjct: 184 KRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS-SFTQEE 242
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL GL G   ++EC FV S V
Sbjct: 243 ISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV 302
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           TELPFFASKVRLG+NG +EV  LGPL++YE+ GLE  K EL  SIEKG+ F
Sbjct: 303 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/291 (65%), Positives = 220/291 (75%), Gaps = 1/291 (0%)
Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL  AL G D++I+PAGVP
Sbjct: 28  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLF INAGIVK+LC  IA  CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD 
Sbjct: 88  RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDP 147
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+L GVT LDVVRA TF A              +GGHAGVTILPL SQ  P S + + EE
Sbjct: 148 KRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS-SFTQEE 206
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL GL G   ++EC FV S V
Sbjct: 207 ISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV 266
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           TELPFFASKVRLG+NG +EV  LGPL++YE+ GLE  K EL  SIEKG+ F
Sbjct: 267 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 317

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  323 bits (827), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 165/291 (56%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct: 48  LKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVP 107
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFN NA IV +L  A A +CP A++ +I+NPVNST+PI AEVFKK G Y+ 
Sbjct: 108 RKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNP 167
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
            K+FGVTTLD+VRA TF A              IGGHAG TI+PL SQ TPK  +   ++
Sbjct: 168 NKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKV-DFPQDQ 226
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct: 227 LTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 286
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           TE  +F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG  F
Sbjct: 287 TECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDF 337

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  322 bits (826), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/291 (56%), Positives = 209/291 (71%), Gaps = 1/291 (0%)
Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct: 20  LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFN NA IV +L  A A +CP A++ +ISNPVNST+PI AEVFKK G Y+ 
Sbjct: 80  RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNP 139
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
            K+FGVTTLD+VRA  F A              IGGHAG TI+PL SQ TPK  +   ++
Sbjct: 140 NKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKV-DFPQDQ 198
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct: 199 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 258
Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           T+ P+F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG +F
Sbjct: 259 TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEF 309

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/288 (54%), Positives = 194/288 (67%), Gaps = 5/288 (1%)
Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S L+LYDIA  TPGVAAD+SHI +   ++GYAGE+    ALEG+DVV+I AGV RKP
Sbjct: 28  PAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGEDPT-PALEGADVVLISAGVARKP 86
Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           G  R DLFN+NAGIVKSL   IA  CP+A + +I+NPVN+TVPIAAEV KKAG YD++KL
Sbjct: 87  GXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKL 146
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
           FGVTTLDV+R++TF A              IGGH+GVTILPL SQ   +    SDEEI A
Sbjct: 147 FGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQV--EGVEFSDEEIAA 204
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
           LTKR Q+ GTEVVEAKAG GSATLS   A   F  A +  L G  +++E  +V+ +    
Sbjct: 205 LTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALVKALQG-EEVIEYAYVEGNGEHA 263
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
            FFA  V+LGK G +E+L  G LSD+EK  L+     L + I+ G+ F
Sbjct: 264 SFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETLNSDIQIGVDF 311

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/291 (51%), Positives = 191/291 (65%), Gaps = 4/291 (1%)
Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S LSLYDIA  TPGVA D+SHI +  +++G++GE+    ALEG+DVV+I AGV RKP
Sbjct: 25  PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVRRKP 83
Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DLFN+NAGIVK+L   +A  CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84  GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
           FGVTTLD++R+ TF A              IGGH+GVTILPL SQ    S   +++E+  
Sbjct: 144 FGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
           LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +  L G   +VEC +V+      
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
            FF+  + LGKNG +E   +G LS +E+  LE +   LK  I  G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/291 (51%), Positives = 191/291 (65%), Gaps = 4/291 (1%)
Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S LSLYDIA  TPGVA D+SHI +  +++G++GE+    ALEG+DVV+I AGV RKP
Sbjct: 25  PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKP 83
Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DLFN+NAGIVK+L   +A  CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84  GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
           FGVTTLD++R+ TF A              IGGH+GVTILPL SQ    S   +++E+  
Sbjct: 144 FGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
           LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +  L G   +VEC +V+      
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
            FF+  + LGKNG +E   +G LS +E+  LE +   LK  I  G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  271 bits (692), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 149/291 (51%), Positives = 190/291 (65%), Gaps = 4/291 (1%)
Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S LSLYDIA  TPGVA D+SHI +  +++G++GE+    ALEG+DVV+I AGV RKP
Sbjct: 25  PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVARKP 83
Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DLFN+NAGIVK+L   +A  CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84  GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143
Query: 124 FGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
           FGVTTLD++ + TF A              IGGH+GVTILPL SQ    S   +++E+  
Sbjct: 144 FGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS--FTEQEVAD 201
Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
           LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +  L G   +VEC +V+      
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
            FF+  + LGKNG +E   +G LS +E+  LE +   LK  I  G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 11/230 (4%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SDVV+I AG+ RKPGM+RDDL   N+ I+KS+   IA + P+A++ +++NPV++   +  
Sbjct: 79  SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTY 135
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPL---- 165
            VFK+AG   E+ +     LD  R +TF A +            +GGH G  ++PL    
Sbjct: 136 SVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 166 FSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225
           ++   P    +  E ++A+ +RT+ GG E+V    G GSA  + A +     +A L    
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
            V   +     +   ++L +    V LG NG ++++ L  L+D EK+ L+
Sbjct: 254 RVLPAIAYLEGEYGYSDL-YLGVPVILGGNGIEKIIELELLAD-EKEALD 301

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 45  KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNST 104
           K LE SDVVI+ AGVPRKPG +RDDL  IN  + +++   I + CP+A V  I+NP++  
Sbjct: 69  KDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITNPLDIX 128
Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILP 164
           V     + K +G  D K +     LD  R +TF A +             GGH G T +P
Sbjct: 129 V---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH-GDTXVP 184
Query: 165 LFS---------QATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAV 215
           L           +   K   L  E + A+  RT+ GG E+V A    GSA  + A AG  
Sbjct: 185 LTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYYAPAAAGIQ 243
Query: 216 FADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
            A+               +F++     LP  A+KV+ G  G DE L +G  ++    G+ 
Sbjct: 244 XAE---------------SFLKDKKXILP-CAAKVKAGXYGLDEDLFVGVPTEISANGVR 287
Query: 276 SLKPELKASIEKGIQFA 292
            ++ E+     + +Q +
Sbjct: 288 PIEVEISDKEREQLQVS 304

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 140/287 (48%), Gaps = 37/287 (12%)
Query: 20  GVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA 75
           G A D++H    I SPA++ G    E L    + SDVVII AGVPRKP MTR DL  +NA
Sbjct: 53  GKALDLNHCMALIGSPAKIFGENNYEYL----QNSDVVIITAGVPRKPNMTRSDLLTVNA 108
Query: 76  GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT-TLDVVRA 134
            IV S+   +  YCP+A V  I+NP+++ V      FK+       K+ G++  LD  R 
Sbjct: 109 KIVGSVAENVGKYCPNAFVICITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARF 164
Query: 135 KTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSD---------EEIKALT 185
           +   +              +GGH G  ++PL S  T     LSD          +I  + 
Sbjct: 165 RCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEII 223
Query: 186 KRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFV--QSSVTEL 243
           K+T  GG E+VE     GSA  + A +    A A L     V  +V  T++  Q +V  L
Sbjct: 224 KKTAFGGGEIVEL-LKTGSAFYAPAASAVAMAQAYLKDSKSV--LVCSTYLTGQYNVNNL 280
Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEK-------QGLESLKPELKA 283
            F    V +GKNG ++V+ +  LSD EK       + +++L  +LK+
Sbjct: 281 -FVGVPVVIGKNGIEDVV-IVNLSDDEKSLFSKSVESIQNLVQDLKS 325

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 10/215 (4%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SD+V+I AG+PRKPGMTR+DL ++NAGIV+ +   I  +  + ++ ++SNP++    +A 
Sbjct: 70  SDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA- 128
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             ++K+G   E+ +     LD  R ++F A +            +GGH G  ++P+    
Sbjct: 129 --WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGH-GDAMVPVVKYT 185
Query: 170 T----PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN 225
           T    P ++ +S E I  L +RT+ GG E+V     +GSA  S A +     ++ ++   
Sbjct: 186 TVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATSVVEMVESIVLDRK 244
Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEV 260
            V         Q  + +  F    V+LGKNG + +
Sbjct: 245 RVLTCAVSLDGQYGI-DGTFVGVPVKLGKNGVEHI 278

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SD+VII AG+PRKPGMTR+DL   NAGIVK +   I  +  + ++ ++SNP++    +A 
Sbjct: 70  SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA- 128
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             + ++G   E+ +     LD  R ++F A +            +GGH G  ++P+    
Sbjct: 129 --WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYT 185
Query: 170 T----PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA------ 219
           T    P S+ L  E I  L +RT++GG E+VE    +GSA  + A +     ++      
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDRK 244
Query: 220 ----CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEV 260
               C +GL G   I           +  F    V+LG+NG +++
Sbjct: 245 RVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQI 278

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 30/225 (13%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SD+VII AG+PRKPGMTR+DL   NAGIVK +   I  +  + ++ ++SNP++    +A 
Sbjct: 70  SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA- 128
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             + ++G   E+ +     LD  R ++F A +            +GGH G  ++P+    
Sbjct: 129 --WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYT 185
Query: 170 T----PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA------ 219
           T    P S+ L  E I  L +RT++GG E+VE    +GSA  + A +     ++      
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDRK 244
Query: 220 ----CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEV 260
               C +GL G          Q  + +  F    V+LG+NG +++
Sbjct: 245 RVLPCAVGLEG----------QYGIDK-TFVGVPVKLGRNGVEQI 278

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SDV+++ +G PRKPGM+R+DL  +NA I ++  +  A   P+A++ M++NP+++   +AA
Sbjct: 71  SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFSQ 168
           EV   +G   E+ +     LD  R +TF A +            +GGH    + LP FS 
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 169 AT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
            +  P S  ++ + +  + +RT+ GG E+V      GSA  + A A A   +A L     
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
           V  +      Q  + ++ +F   V LG  G +++L L PL++ E   L +    ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SDV+++ +G PRKPGM+R+DL  +NA I ++  +  A   P+A++ M++NP+++   +AA
Sbjct: 71  SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFSQ 168
           EV   +G   E+ +     LD  R +TF A +            +GGH    + LP FS 
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 169 AT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
            +  P S  ++ + +  + +RT+ GG E+V      GSA  + A A A   +A L     
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
           V  +      Q  + ++ +F   V LG  G +++L L PL++ E   L +    ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SDV+++ +G PRKPGM+R+DL  +NA I ++  +  A   P+A++ M++NP+++   +AA
Sbjct: 71  SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFSQ 168
           EV   +G   E+ +     LD  R +TF A +            +GGH    + LP FS 
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 169 AT--PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
            +  P S  ++ + +  + +RT+ GG E+V      GSA  + A A A   +A L     
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
           V  +      Q  + ++ +F   V LG  G +++L L PL++ E   L +    ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 9/240 (3%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           SDV+++ +G PRKPGM+R+DL  +NA I ++  +  A   P+A++ M++NP+++   +AA
Sbjct: 71  SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAA 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTI-LPLFS- 167
           EV   +G   E+ +     LD  R +TF A +            +GGH    + LP FS 
Sbjct: 131 EV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 168 -QATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG 226
               P S  ++ + +  + +RT+ GG E+V      GSA  + A A A   +A L     
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 227 VPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
           V  +      Q  + ++ +F   V LG  G +++L L PL++ E   L +    ++A+++
Sbjct: 247 VMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLD 304

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 15/161 (9%)
Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTV 105
           A+EG+DVVI+ AGVPRKPGM+RDDL  IN  +++ +   I  Y P A V  I+NP+++ V
Sbjct: 72  AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMV 131
Query: 106 PIAAEVFKKAGTYDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILP 164
                  +K       K+ G+   LD  R + F + +            +GGH G +++P
Sbjct: 132 ----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVP 186
Query: 165 LFSQAT---------PKSNNLSDEEIKALTKRTQDGGTEVV 196
           L   +T          K    S +++  + +RT+DGG E+V
Sbjct: 187 LARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV 227

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 105/238 (44%), Gaps = 46/238 (19%)
Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
           L+GSDVVI+ AGVP+KPG TR  L   NA ++K +   ++ Y P ++V +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 107 IAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPL 165
           +    F K    D +K+FG  T LD  R +T  A              IG H G + +P+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPV 179
Query: 166 FSQAT----PKSN------NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAV 215
           +S A     P  N          + ++   ++T+    E++E    KG+   ++A A   
Sbjct: 180 WSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHYAIALA--- 233
Query: 216 FADACLMGLNGVPDIVECTFV-QSSVTELPFFASK------------VRLGKNGADEV 260
                      V DIVE  F  +  V  L  +               V LGK+G + +
Sbjct: 234 -----------VADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERI 280

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 131/298 (43%), Gaps = 49/298 (16%)
Query: 15  IANTPGV----AADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL 70
           IA TPG     A D++H  +   V+         + + GSD+V++ AG+ RKPGMTR+ L
Sbjct: 29  IARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGRKPGMTREQL 88
Query: 71  FNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLD 130
              NA  +  L   I  Y   A+V + +NPV++   +   ++KK G   E+ +     LD
Sbjct: 89  LEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYV---MYKKTGFPRERVIGFSGILD 145
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQAT----PKSNNLSDEEIKALTK 186
             R   + + K            +G H G  + P+   ++    P  + +S EEI+ +  
Sbjct: 146 SARMAYYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVS 204
Query: 187 RTQDGGTEVVEAK---AGKGSATLSMAYAGAVFADA--------CLMGLNGVPDIVECTF 235
            T + G ++ E +   +  G A   +    A+  D+         L G  G  DI     
Sbjct: 205 ETVNAGAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYPYSLYLQGEYGYNDI----- 259
Query: 236 VQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQG-----------LESLKPELK 282
               V E+P       +GK+G + ++ L PL++ EK+            +E+L P+L+
Sbjct: 260 ----VAEVPAV-----IGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQLR 307

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 23/232 (9%)
Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
           ++ + L+D+      G A D S   S A            + + GSDVVII AG+ + PG
Sbjct: 32  LADVVLFDVVTGMPEGKALDDSQATSIADTNVSVTSANQYEKIAGSDVVIITAGLTKVPG 91
Query: 65  -----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
                 +R+DL   NA I++ +   +  YCP A V +++NP++  V    + F +A    
Sbjct: 92  KSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV----KCFHEASGLP 147
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP------- 171
           +  + G+   LD  R + F A +            IG H G  +LPL    T        
Sbjct: 148 KNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLPLARYVTVNGFPLRE 206
Query: 172 --KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
             K   +++ ++  + +RT+  G E+V    G+GSA  + A +    A A L
Sbjct: 207 FIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAPALSAITMAQAFL 257

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 23/232 (9%)
Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
           ++ + L+D+      G A D S   S A            + + GSDVVII AG+ + PG
Sbjct: 32  LADVVLFDVVTGMPEGKALDDSQATSIADTNVSVTSANQYEKIAGSDVVIITAGLTKVPG 91
Query: 65  -----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
                 +R+DL   NA I++ +   +  YCP A V +++NP++  V    + F +A    
Sbjct: 92  KSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV----KCFHEASGLP 147
Query: 120 EKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP------- 171
           +  + G+   LD  R + F A +            IG H G  +LPL    T        
Sbjct: 148 KNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLPLARYVTVNGFPLRE 206
Query: 172 --KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
             K   +++ ++  + +RT+  G E+V    G+GSA  + A +    A A L
Sbjct: 207 FIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAPALSAITMAQAFL 257

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 48  EGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPI 107
           E SDV II AG+PR PGM+RDDL   N  IV  +        P + + +++NP++    +
Sbjct: 68  EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYV 127
Query: 108 AAEVFKKAGTYDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLF 166
           A E    A  +   ++ G+   LD  R ++F A +            +GGH G T++PL 
Sbjct: 128 AYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLP 182
Query: 167 SQAT----PKSNNLSDEEIKALTKRTQDGGTEVVE 197
              T    P    + D  I+ + +RT+  G E+V+
Sbjct: 183 RYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           L+DI  N P G A D SH N  A              L GSDVVI+ AG  + PG     
Sbjct: 33  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKE 92
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I   CP+A + +++NPV+  V    ++  +     + K+ 
Sbjct: 93  WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
             +SD E++A+  RT +   E+V   A   S  ++ A A    A++ L  L  V     +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           +E  +  S +    F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           L+DI  N P G A D SH N  A              L G+DVVI+ AG  + PG     
Sbjct: 32  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 91
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I   CP+A + +++NPV+  V    ++  +     + K+ 
Sbjct: 92  WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 147
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 205
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
             +SD E++A+  RT +   E+V   A   S  ++ A A    A++ L  L  V     +
Sbjct: 206 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 262
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           +E  +  S +    F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 263 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 309

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           L+DI  N P G A D SH N  A              L G+DVVI+ AG  + PG     
Sbjct: 33  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 92
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I   CP+A + +++NPV+  V    ++  +     + K+ 
Sbjct: 93  WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
             +SD E++A+  RT +   E+V   A   S  ++ A A    A++ L  L  V     +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           +E  +  S +    F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 124/292 (42%), Gaps = 35/292 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           L+DI  N P G A D SH N  A              L G+DVVI+ AG  + PG     
Sbjct: 32  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 91
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I   CP+A + +++NPV+  V    ++  +     + K+ 
Sbjct: 92  WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 147
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 205
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
             +SD E++A+  RT +   E+V   A   S  ++ A A    A++ L  L  V     +
Sbjct: 206 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 262
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           +E  +  S +    F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 263 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 309

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 30/285 (10%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           ++DI  N P G A D SH N  A              L+ +DVVI+ AG  + PG     
Sbjct: 33  MFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKE 92
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I N CP+A + +++NPV+  V    ++  +     + K+ 
Sbjct: 93  WNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIV 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233
             ++D+E+ A+  RT +   E+V   A   S  ++ A A    A++ +  L  V  ++  
Sbjct: 207 KKITDQELDAIFDRTINTALEIVNLHA---SPYVAPAAAIIEMAESYIRDLRKV--LICS 261
Query: 234 TFVQSSVTELPFFA-SKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
           T ++        FA + + +G NG ++V+ L   +D +K+  E++
Sbjct: 262 TLLEGQYGHKDIFAGTPLVIGGNGVEQVIELQLNADEKKKFDEAV 306

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           ++D+  N P G A D SH N  A              L+G+DVVI+ AG  + PG     
Sbjct: 32  MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNSYDDLKGADVVIVTAGFTKAPGKSDKE 91
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I N CP+A + +++NPV+  V +   +F+ +G   + K+ 
Sbjct: 92  WNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVTNPVDVMVQL---LFEHSGV-PKNKII 147
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGNKMVLLKRYITVGGIPL--QEFINN 205
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKA 200
             ++DEE++ +  RT +   E+V   A
Sbjct: 206 KKITDEEVEGIFDRTVNTALEIVNLLA 232

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 123/292 (42%), Gaps = 35/292 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           L+DI  N P G A D SH N  A              L GSDVVI+ AG  + PG     
Sbjct: 33  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKE 92
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             R DL  +N  I+  +   I   CP+A + +++NPV+  V    ++  +     + K+ 
Sbjct: 93  WNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
             +SD E++A+  RT +   E+V   A   S  ++ A A    A++ L  L  V     +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHA---SPYVAPAAAIIEMAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           +E  +  S +    F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17  NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
           +T G AAD +H      N+  +  GY       +   GSDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 93
Query: 72  NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
             NA I++ + +++  +    +    SNPV+    +      +AG    +++ G    LD
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
             R +   + +            +G H G   +P+FS+      +   S +E + L    
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 208
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 209 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           F   VRLG NG +E++    L DYE+  +     +L    +K
Sbjct: 262 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17  NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
           +T G AAD +H      N+  +  GY       +   GSDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 92
Query: 72  NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
             NA I++ + +++  +    +    SNPV+    +      +AG    +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
             R +   + +            +G H G   +P+FS+      +   S +E + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           F   VRLG NG +E++    L DYE+  +     +L    +K
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17  NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
           +T G AAD +H      N+  +  GY       +   GSDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 92
Query: 72  NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
             NA I++ + +++  +    +    SNPV+    +      +AG    +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
             R +   + +            +G H G   +P+FS+      +   S +E + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGRVLPASVKLEGEFGHEDTA---- 260
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           F   VRLG NG +E++    L DYE+  +     +L    +K
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 121/292 (41%), Gaps = 35/292 (11%)
Query: 12  LYDIA-NTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG----- 64
           L+DI  N P G A D SH N  A              L G+DVVI+ AG  + PG     
Sbjct: 33  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKE 92
Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF 124
             RDDL  +N  I+  +   I   CP+A + +++NPV+    +  ++  +     + K+ 
Sbjct: 93  WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKII 148
Query: 125 GV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL----------PLFSQATPKS 173
           G+   LD  R K + + K            +G H    +L          PL  Q    +
Sbjct: 149 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPL--QEFINN 206
Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV---PDI 230
             +SD E++A+  RT +   E+V   A    A  +        A++ L  L  V     +
Sbjct: 207 KLISDAELEAIFDRTVNTALEIVNLHAAPYVAPAAAIIE---MAESYLKDLKKVLICSTL 263
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           +E  +  S +    F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 264 LEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 310

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 7   VSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPA 57
           ++ + L+DIA     G A D++H      S ++V G   YA        + GSDVVII A
Sbjct: 28  LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYAD-------ISGSDVVIITA 80
Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
            +P +P   R +L   NA I+ S+   +  YCP+A V  I+NP++    +    F+K   
Sbjct: 81  SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSG 136
Query: 118 YDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP----- 171
               K+ G+   LD  R +TF A              IGGH G  ++P  S  +      
Sbjct: 137 LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPL 195
Query: 172 ----KSNNLSDEEIKALTKRTQDGGTEVVE 197
               K   ++ E+I  +   T+    EV +
Sbjct: 196 SSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 25/295 (8%)
Query: 1   MKLDPLVSSLSLYDI--ANTPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVII 55
           M L  +   + + DI    T G A D+S+     SP ++  Y+ E    K    +D+V+I
Sbjct: 27  MVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI--YSAEYSDAK---DADLVVI 81
Query: 56  PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            AG P++PG TR DL N N  I+KS+   I +   + +  + +NPV+    +    +K +
Sbjct: 82  TAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVDI---LTYATWKLS 138
Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN 175
           G    + +   T+LD  R +   A              +G H G T  P++S A      
Sbjct: 139 GFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVT 197
Query: 176 LSDEEIKA--------LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV 227
           ++ E +KA        L K  +D      E    KG+    +A A A  + A L   N V
Sbjct: 198 IA-EWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAV 256
Query: 228 PDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
             +      Q  + +L +  +   + +NG   +L + PL+D+E++ ++    +LK
Sbjct: 257 LPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK 309

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 7   VSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPA 57
           ++ + L+DIA     G A D++H      S ++V G   YA        + GSDVVII A
Sbjct: 28  LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTNDYAD-------ISGSDVVIITA 80
Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
            +P +P   R +L   NA I+ S+   +  YCP+A V  I+NP++  V      F+K   
Sbjct: 81  SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMV----SHFQKVSG 136
Query: 118 YDEKKLFGVT-TLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATP----- 171
               K+ G+   LD  R +TF A              IGGH G  ++P  S  +      
Sbjct: 137 LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPL 195
Query: 172 ----KSNNLSDEEIKALTKRTQDGGTEVVE 197
               K   ++ E+I  +   T+    EV +
Sbjct: 196 SSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 130/295 (44%), Gaps = 25/295 (8%)
Query: 1   MKLDPLVSSLSLYDI--ANTPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVII 55
           M L  +   + + DI    T G A D+S+     SP ++  Y+ E    K    +D+V+I
Sbjct: 28  MVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI--YSAEYSDAK---DADLVVI 82
Query: 56  PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            AG P+KPG TR DL N N  I+KS+   I +   + +  + +NPV+    +    +K +
Sbjct: 83  TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI---LTYATWKLS 139
Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN 175
           G    + +   T+LD  R +   A              +G H G T  P++S A      
Sbjct: 140 GFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVT 198
Query: 176 LSDEEIKA--------LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV 227
           ++ E +KA        L K  +D      E    KG+    +A A A  + A L   N V
Sbjct: 199 IA-EWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAV 257
Query: 228 PDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
             +      Q  + ++ +  +   + +NG   +L + PL+D+E++ ++    +LK
Sbjct: 258 LPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK 310

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17  NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
           +T G AAD +H      N+  +  GY       +   GSDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 93
Query: 72  NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
             NA I++ + +++  +    +    SNPV+    +      +AG    +++ G    LD
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
             R +   + +            +G H G   +P+FS+ +    +   S +E + L    
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 208
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 209 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           F   V LG NG +E++    L DYE+  +     +L    +K
Sbjct: 262 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 119/282 (42%), Gaps = 31/282 (10%)
Query: 17  NTPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF 71
           +T G AAD +H      N+  +  GY       +   GSDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY-------EDTAGSDVVVITAGIPRQPGQTRIDLA 92
Query: 72  NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLD 130
             NA I++ + +++  +    +    SNPV+    +      +AG    +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 131 VVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRT 188
             R +   + +            +G H G   +P+FS+ +    +   S +E + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 207
Query: 189 QDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIV--ECTFVQSSVTELPF 245
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           F   V LG NG +E++    L DYE+  +     +L    +K
Sbjct: 261 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 23/294 (7%)
Query: 1   MKLDPLVSSLSLYDI--ANTPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVII 55
           M L  +   + + DI    T G A D+       SP ++  Y+ E    K    +D+V+I
Sbjct: 28  MVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI--YSAEYSDAK---DADLVVI 82
Query: 56  PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            AG P+KPG TR DL N N  I+KS+   I +   + +  + +NPV+    +    +K +
Sbjct: 83  TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI---LTYATWKLS 139
Query: 116 GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNN 175
           G    + +   T+LD  R +   A K            I G  G T  P++S A      
Sbjct: 140 GFPKNRVVGSGTSLDTARFRQSIA-KMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVT 198
Query: 176 LSDE-----EIK--ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP 228
           +++      EIK   L K  +D   +  E    KG+    +A A A  + A L   N V 
Sbjct: 199 IAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVL 258
Query: 229 DIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
            +      Q  + ++ +  +   + +NG   +L + PL+D+E++ ++    +LK
Sbjct: 259 PLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK 310

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 15/136 (11%)
Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKA----LEGSDVVIIPAGVP 60
           V  ++L DIA     G A D++H  + A ++ Y   + +G A    L+GS+++++ AG+ 
Sbjct: 25  VDEIALVDIAEDLAVGEAMDLAH--AAAGIDKYP--KIVGGADYSLLKGSEIIVVTAGLA 80
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTR DL + NAGI+K +   I    P + + +++NP++    I   ++K++G    
Sbjct: 81  RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESGK-PR 136
Query: 121 KKLFGV-TTLDVVRAK 135
            ++FG+   LD  R K
Sbjct: 137 NEVFGMGNQLDSQRLK 152

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           ++ + LYD+      G A D+SH+ S          E     AL G+D VI+ AG+ + P
Sbjct: 33  LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVP 92
Query: 64  G-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           G      +R+DL   N+ I++ +   I  YCP   + +++NP++  V +  E    A   
Sbjct: 93  GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE----ASGV 148
Query: 119 DEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS---------Q 168
               + G+   LD  R + + A              IG H G  ++PL           Q
Sbjct: 149 PTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQ 207
Query: 169 ATPKSNNLSDEEIKALTKRTQDGGTEVVE 197
              K   +++++++ + + T+  G E+V 
Sbjct: 208 KFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           ++ + LYD+      G A D+SH+ S          E     AL G+D VI+ AG+ + P
Sbjct: 31  LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVP 90
Query: 64  G-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           G      +R+DL   N+ I++ +   I  YCP   + +++NP++  V +  E    A   
Sbjct: 91  GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE----ASGV 146
Query: 119 DEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS---------Q 168
               + G+   LD  R + + A              IG H G  ++PL           Q
Sbjct: 147 PTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQ 205
Query: 169 ATPKSNNLSDEEIKALTKRTQDGGTEVVE 197
              K   +++++++ + + T+  G E+V 
Sbjct: 206 KFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 23/209 (11%)
Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           ++ + LYD+      G A D+SH+ S          E     AL G+D VI+ AG+ + P
Sbjct: 33  LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVP 92
Query: 64  G-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           G      +R+DL   N+ I++ +   I  YCP   + +++NP++  V +  E    A   
Sbjct: 93  GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMXE----ASGV 148
Query: 119 DEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS---------Q 168
               + G+   LD  R + + A              IG H G  ++PL           Q
Sbjct: 149 PTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQ 207
Query: 169 ATPKSNNLSDEEIKALTKRTQDGGTEVVE 197
              K   +++++++ + + T+  G E+V 
Sbjct: 208 KFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 25/215 (11%)
Query: 1   MKLDPLVSSLSLYDI--ANTPGVAADVSH-INSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
           M L    + L L D+      G A D++H +    Q+  YAG+      ++  DV+++ A
Sbjct: 26  MALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS---DVKDCDVIVVTA 82
Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           G  RKPG TR DL   N  I K +   I  Y  H ++ ++SNPV+    I   + +K   
Sbjct: 83  GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSG 138
Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA------- 169
               K+ G  T LD +R +   + K            IG H G + LPL+S         
Sbjct: 139 LPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNI 197
Query: 170 -----TPKSNNLSDEEIKALTKRTQDGGTEVVEAK 199
                 PK  N ++E+ K + +  +  G  +++ K
Sbjct: 198 NEYIDDPKC-NFTEEDKKKIAEDVKTAGATIIKNK 231

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 37  YAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNM 96
           Y   ++  + ++ SDVVII +GVPRK GM+R DL   NA IV      IA  C   +  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 97  ISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIG 155
           I+NPV+  +   A V  K   ++  ++FG+ T LD +R K   A              IG
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIG 176
Query: 156 GHAGVTILPLFSQAT------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAG 201
            H G +++PL S  +       K     +  I  + +  +  G +++  K G
Sbjct: 177 EH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGG 227

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 115/286 (40%), Gaps = 19/286 (6%)
Query: 3   LDPLVSSLSLYDIA--NTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           L  L   L+L D+      G A D+ H +   +      ++        S VV++ AG  
Sbjct: 41  LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDYS-VTANSKVVVVTAGAR 99
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           ++ G +R +L   N  I K +   I  Y P+ ++ ++SNPV+    +A   +K +G    
Sbjct: 100 QQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSGLPRN 156
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGH--------AGVTILPLFSQA-TP 171
           + +   T LD  R +     K            IG H        +GV +  +F Q   P
Sbjct: 157 RVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQGLNP 216
Query: 172 KSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI 230
                 D E+ K++ K   D   EV++    KG  + ++  + A    + L  L     +
Sbjct: 217 DMGTDKDKEDWKSVHKMVVDSAYEVIKL---KGYTSWAIGMSAADLCQSILKNLRKCHPV 273
Query: 231 VECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES 276
                    V E  F +    LG +G  +V+ +   SD EKQ ++S
Sbjct: 274 STLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQLVKS 319

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           +D+V+I AG  +KPG +R +L      I+K++   +    P+A+  +I+NPV+    IA 
Sbjct: 76  ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IAT 131
Query: 110 EVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQ 168
            V +K     E ++FG  T LD  R + F   +            I G  G + +PL+  
Sbjct: 132 HVAQKLTGLPENQIFGSGTNLDSARLR-FLIAQQTGVNVKNVHAYIAGEHGDSEVPLWES 190
Query: 169 AT------------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
           AT            P  + L  ++ + + +  ++   +++    GKG+   ++  +G   
Sbjct: 191 ATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GKGATNYAIGMSGVDI 247
Query: 217 ADACLMGLNGV 227
            +A L   N +
Sbjct: 248 IEAVLHDTNRI 258

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 22/236 (9%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S VV++ AG  ++ G +R +L   N  I K +   I  Y P+ ++ ++SNPV+    +A 
Sbjct: 88  SKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             +K +G    + +   T LD  R +     K            +G H G + +P++S  
Sbjct: 147 --WKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGV 203
Query: 170 ----------TPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                      P+     D E  KA+ K   DG  EV++ K G  S  + M+ A  V  +
Sbjct: 204 NVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK-GYTSWAIGMSVADLV--E 260
Query: 219 ACLMGLNGVPDIVECTFVQ--SSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQ 272
           + +  ++ V  +   T VQ    V +  F +    LG +G  +V+ +   ++ EKQ
Sbjct: 261 SIIKNMHKVHPV--STLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQ 314

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 20/253 (7%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +VII AG  ++ G +R +L   N  I K +   +  Y PH  + ++SNPV+    +A 
Sbjct: 88  SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS-- 167
             +K +G    + +     LD  R + +  G+            I G  G + +P++S  
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFR-YLMGERLGVHALSCHGWILGEHGDSSVPVWSGM 203
Query: 168 --------QATPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                      P+    +D E+ K + K+  D   EV++    KG  T ++  + A  A+
Sbjct: 204 NVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKL---KGYTTWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           + +  L  V  I         + E  F +    LG+NG  +V+ +   S+ E    +S  
Sbjct: 261 SIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKS-- 318
Query: 279 PELKASIEKGIQF 291
            +    I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 29/281 (10%)
Query: 6   LVSSLSLYDIANTPGVAADVSHIN-----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +V  L + D+ +T  V  DV  +      SP  V   AGE         +D+V+I AG  
Sbjct: 30  IVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVKAGEYS---DCHDADLVVICAGAA 85
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG TR DL + N  I KS+   +       +  + +NPV+    +A   +K +G   E
Sbjct: 86  QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDI---LAYATWKFSGLPKE 142
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
           + +   T LD  R +   +              IG H G T LP++S A     N++ + 
Sbjct: 143 RVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA-----NIAGQP 196
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV----ECTFV 236
           +K L ++  +G  ++ +       A   +  A         MGL  + + +    +    
Sbjct: 197 LKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLT 256
Query: 237 QSSVTELPFFASKVRLG------KNGADEVLGLGPLSDYEK 271
            S++ E  +    V +G      +NG   V+ + PL+D E+
Sbjct: 257 VSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQ 296

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 29/281 (10%)
Query: 6   LVSSLSLYDIANTPGVAADVSHIN-----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +V  L + D+ +T  V  DV  +      SP  V   AGE         +D+V+I AG  
Sbjct: 30  IVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVKAGEYS---DCHDADLVVICAGAR 85
Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG TR DL + N  I KS+   +       +  + +NPV+    +A   +K +G   E
Sbjct: 86  QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDI---LAYATWKFSGLPKE 142
Query: 121 KKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSDEE 180
           + +   T LD  R +   +              IG H G T LP++S A     N++ + 
Sbjct: 143 RVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA-----NIAGQP 196
Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV----ECTFV 236
           +K L ++  +G  ++ +       A   +  A         MGL  + + +    +    
Sbjct: 197 LKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARITEAIFRNEDAVLT 256
Query: 237 QSSVTELPFFASKVRLG------KNGADEVLGLGPLSDYEK 271
            S++ E  +    V +G      +NG   V+ + PL+D E+
Sbjct: 257 VSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQ 296

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
           LEG+  V++ AGV ++PG TR  L + NA +   +   +    P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
           +A   ++ +G    + +   T LD  R +   A              +G H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
                  PL   A  +   LS E+   + +  +     ++E   GKG+    +    A  
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
             A L    GV  +   T     V E+     ++ LG  G +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVE 279

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 30/283 (10%)
Query: 20  GVAADVSH--INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77
           G A D +H  + +P  V+ + G+         +D+V+I AG  +KPG TR DL + N  I
Sbjct: 46  GDAMDFNHGKVFAPKPVDIWHGDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAI 102
Query: 78  VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTF 137
            +S+  ++       L  + +NPV+    +    +K +G   E+ +   T LD  R + F
Sbjct: 103 FRSIVESVMASGFQGLFLVATNPVD---ILTYATWKFSGLPHERVIGSGTILDTARFR-F 158
Query: 138 YAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA----------TPKSNNLSDEEIKALTKR 187
             G+            I G  G T LP++SQA                 + ++++ +   
Sbjct: 159 LLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 188 TQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI---VECTFVQSSVTELP 244
            +D   +++E    KG+    +A   A    A L   N +  +   ++  + +  V    
Sbjct: 219 VRDAAYQIIEK---KGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDV---- 271
Query: 245 FFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           +      + +NG  EV+ +  L+D EK         LK+ + +
Sbjct: 272 YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLAR 313

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 30/283 (10%)
Query: 20  GVAADVSH--INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI 77
           G A D +H  + +P  V+ + G+         +D+V+I AG  +KPG TR DL + N  I
Sbjct: 46  GDAMDFNHGKVFAPKPVDIWHGDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAI 102
Query: 78  VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTF 137
            +S+  ++       L  + +NPV+    +    +K +G   E+ +   T LD  R + F
Sbjct: 103 FRSIVESVMASGFQGLFLVATNPVD---ILTYATWKFSGLPHERVIGSGTILDTARFR-F 158
Query: 138 YAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA----------TPKSNNLSDEEIKALTKR 187
             G+            I G  G T LP++SQA                 + ++++ +   
Sbjct: 159 LLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 188 TQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI---VECTFVQSSVTELP 244
            +D   +++E    KG+    +A   A    A L   N +  +   ++  + +  V    
Sbjct: 219 VRDAAYQIIEK---KGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDV---- 271
Query: 245 FFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           +      + +NG  EV+ +  L+D EK         LK+ + +
Sbjct: 272 YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLAR 313

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
           LEG+  V++ AGV ++PG TR  L + NA +   +   +    P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
           +A   ++ +G    + +   T LD  R +   A              +G H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
                  PL   A  +   LS E+   + +  +     ++E   GKG+    +    A  
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
             A L    GV  +   T     V E+     ++ LG  G +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVE 279

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 1   MKLDPLVSSLSLYD--IANTPGVAADVSHINSPAQVEGYAG-----EEQLGKALEGSDVV 53
           M+L P   +L LYD       GVA ++ H        G+ G        + +AL  +  +
Sbjct: 31  MRLTP---NLCLYDPFAVGLEGVAEEIRHC-------GFEGLNLTFTSDIKEALTDAKYI 80
Query: 54  IIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP---HALVNMISNPVNST 104
           +   G PRK GMTR+DL   NA I   L   I +YCP   H ++  I NP + T
Sbjct: 81  VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVII--IFNPADIT 132

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 17/222 (7%)
Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
           LEG+  V++ AGV ++PG TR  L + NA +   +   +    P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
           +A   ++ +G    + +   T LD  R +   A              +G H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
                  PL   A  +   LS E+   + +  +     ++E   GKG+    +    A  
Sbjct: 182 SAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGAD 258
             A L    GV  +   T     V E+     ++ LG  G +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVE 279

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 20/253 (7%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +V+I AG  ++ G +R +L   N  I K +   I  Y P+  + ++SNPV+    +A 
Sbjct: 89  SRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVA- 147
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             +K +G    + +     LD  R + +  G+            I G  G + +P++S  
Sbjct: 148 --WKISGFPKNRVIGSGCNLDSARFR-YLMGERLGVHPLSCHGWILGEHGDSSVPVWSGV 204
Query: 170 TPKSNNLSD-----------EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                +L +           E  KA+ K   D   EV++    KG  + ++  + A  A+
Sbjct: 205 NVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKL---KGYTSWAIGLSVADLAE 261
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           + +  L  V  I         + E  F +    LG+NG  +V+ +  L+  E+  L+   
Sbjct: 262 SIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKV-TLTPEEEAHLKKSA 320
Query: 279 PELKASIEKGIQF 291
             L   I+K +QF
Sbjct: 321 DTL-WGIQKELQF 332

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
           LEG+  V++ AGV ++PG TR  L + NA +   +   +    P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 107 IAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL--- 163
           +A   +  +G    + +   T LD  R +   A              +G H    +L   
Sbjct: 125 VA---YALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 164 -------PLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVF 216
                  PL   A  +   LS E+   + +  +     ++E   GKG+    +    A  
Sbjct: 182 SAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 217 ADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNG 256
             A L    GV  +   T   + V E+     ++ LG  G
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVAGVLEVSLSLPRI-LGAGG 277

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAI-ANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           PR PGM R DL +IN  I      A+ A   P+  V ++ NP N+   I     K A   
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 119 DEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQATPKSNNLSD 178
             K    +T LD  RAK   A K            I G+   T +P F  A  K + +  
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA--KIHGIPV 243
Query: 179 EEIKALTKRTQDGGTEVVEAKAG 201
            E+    K  +D  T +V+ + G
Sbjct: 244 TEVIRDRKWLEDEFTNMVQTRGG 266

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +VII AG  ++ G +R +L   N  I K +   +  Y P   + ++SNPV+    +A 
Sbjct: 88  SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS-- 167
             +K +G    + +     LD  R +     +            +G H G + +P++S  
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGV 203
Query: 168 --------QATPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                      P+    +D E+ K + K+  D   EV++    KG  + ++  + A  A+
Sbjct: 204 NVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           + +  L  V  I         + E  F +    LG+NG  +V+ +    D E +  +S  
Sbjct: 261 SIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKS-- 318
Query: 279 PELKASIEKGIQF 291
            +    I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +VII AG  ++ G +R +L   N  I K +   +  Y P   + ++SNPV+    +A 
Sbjct: 89  SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA- 147
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFS-- 167
             +K +G    + +     LD  R +     +            +G H G + +P++S  
Sbjct: 148 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGV 204
Query: 168 --------QATPKSNNLSD-EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                      P+    +D E+ K + K+  D   EV++    KG  + ++  + A  A+
Sbjct: 205 NVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAE 261
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           + +  L  V  I         + E  F +    LG+NG  +V+ +    D E +  +S  
Sbjct: 262 SIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKS-- 319
Query: 279 PELKASIEKGIQF 291
            +    I+K +QF
Sbjct: 320 ADTLWGIQKELQF 332

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 36/260 (13%)
Query: 24  DVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT 83
           D     +P ++  Y+GE    K    +D+V+I AG P+KPG +R DL N N  I+ S+  
Sbjct: 52  DAQAFTAPKKI--YSGEYSDCK---DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVK 106
Query: 84  AIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXX 143
            + +     +  + +NPV+    +    +K +G   E+ +   T+LD  R +    GK  
Sbjct: 107 PVVDSGFDGIFLVAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLRVAL-GKQF 162
Query: 144 XXXXXXXXXXIGGHAGVTILPLFSQAT---------PKSNNLSDEEIKALTKRTQDGGTE 194
                     I G  G +    +S AT          K   +SD+++  L    ++   +
Sbjct: 163 NVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYD 222
Query: 195 VVEAKA----GKGSATLSMAYA-----GAVFADACLM----GLN----GVPDIVECTFVQ 237
           ++  K     G G+A + ++ A      AV      M    GLN    G P I+  T ++
Sbjct: 223 IINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLK 282
Query: 238 SSVTELPFFASKVRLGKNGA 257
             + E P  A +++  ++ A
Sbjct: 283 -QIIESPLSADELKKMQDSA 301

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANY-CPHALVNMISNPVNST 104
           A +G  + I+    PRK GM R DL  +NA I K    AIA        V ++ NP N+ 
Sbjct: 97  AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN 156
Query: 105 VPIAAEVFKKA-GTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL 163
             I   + K A G  + + +  +T LD  RA +  A K            I G+   T +
Sbjct: 157 ALI---LLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQV 213
Query: 164 PLFSQA----TP-----KSNNLSDEEIKALTKRTQDGGTEVVEAK 199
           P    A    TP     K + L D+ ++ +  R    G E+++ +
Sbjct: 214 PDTDSAVIGTTPAREAIKDDALDDDFVQVVRGR----GAEIIQLR 254

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 47  LEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVP 106
           L  + VVI+ AG  +KPG +R DL   NA I + L   I    P A++ + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 107 IAAEV 111
           +A ++
Sbjct: 125 LATQL 129

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           +D+V I AG  +KPG TR +L   N  I K + + +       +  + +NPV+    +  
Sbjct: 74  ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD---ILTY 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             +K +G   E+ +   TTLD  R +   +              IG H G T LP++S A
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GDTELPVWSHA 189
Query: 170 T----------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA 219
                       K++    EE+  +    ++    ++E    KG+    +A + A    A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGVAMSLARITKA 246
Query: 220 CLMGLNGV 227
            L   N +
Sbjct: 247 ILHNENSI 254

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           +D+V I AG  +KPG TR +L   N  I K + + +       +  + +NPV+    +  
Sbjct: 74  ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD---ILTY 130
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             +K +G   E+ +   TTLD  R +   +              IG H G T LP++S A
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHA 189
Query: 170 T----------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA 219
                       K++    EE+  +    ++    ++E    KG+    +A + A    A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGVAMSLARITKA 246
Query: 220 CLMGLNGV 227
            L   N +
Sbjct: 247 ILHNENSI 254

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +V++ AGV ++ G +R +L   N  + K +   I  Y P+ ++ ++SNPV+    +A 
Sbjct: 90  SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVA- 148
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGH--------AGVT 161
             +K +G    + +     LD  R +     K            +G H        +GV 
Sbjct: 149 --WKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSVAVWSGVN 206
Query: 162 IL-PLFSQATPKSNNLSD-EEIKALTKRTQDGGTEVVEAK 199
           +   +  Q  P+    +D E  K + K   +   EV++ K
Sbjct: 207 VAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLK 246

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +VII AG  ++ G +R +L   N  I K +   +  Y P+  + ++SNPV+    +A 
Sbjct: 88  SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             +K +G    + +     LD  R +     +            +G H G + +P++S  
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGM 203
Query: 170 TPKSNNLS-----------DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                +L             E+ K + K+  +   EV++    KG  + ++  + A  A+
Sbjct: 204 NVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL---KGYTSWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           + +  L  V  +         + +  F +    LG+NG  +++ +   S+ E +  +S  
Sbjct: 261 SIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKS-- 318
Query: 279 PELKASIEKGIQF 291
            +    I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 20/253 (7%)
Query: 50  SDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAA 109
           S +VII AG  ++ G +R +L   N  I K +   +  Y P+  + ++SNPV+    +A 
Sbjct: 88  SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVA- 146
Query: 110 EVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQA 169
             +K +G    + +     LD  R +     +            +G H G + +P++S  
Sbjct: 147 --WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGM 203
Query: 170 TPKSNNLS-----------DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 218
                +L             E+ K + K+  +   EV++    KG  + ++  + A  A+
Sbjct: 204 NVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL---KGYTSWAIGLSVADLAE 260
Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           + +  L  V  +         + +  F +    LG+NG  +++ +   S+ E +  +S  
Sbjct: 261 SIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKS-- 318
Query: 279 PELKASIEKGIQF 291
            +    I+K +QF
Sbjct: 319 ADTLWGIQKELQF 331

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 46  ALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNST 104
           A + +DV ++    PR  GM R DL + NA I      A+       + V ++ NP N+ 
Sbjct: 82  AFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTN 141
Query: 105 VPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILP 164
             IA    K A    +K    +  LD  RA +  A K            + G+   T+ P
Sbjct: 142 AYIA---MKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIEKLAVWGNHSPTMYP 198
Query: 165 LFSQATPKSNNL 176
            F  AT +  +L
Sbjct: 199 DFRFATAEGESL 210

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%)
Query: 49  GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108
           GS +V+I AG  ++ G +R +L   N  I K +   I  + P  ++ ++SNPV+    +A
Sbjct: 89  GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA 148
Query: 109 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQ 168
              +K +G    + +     LD  R +     +            IG H G ++  ++S 
Sbjct: 149 ---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSG 204
Query: 169 ATPKS--------NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC 220
               S         N   ++ K L K   D   EV++    KG  + ++  + A  A+  
Sbjct: 205 MNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL---KGYTSWAIGLSVADLAETI 261
Query: 221 LMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPE 280
           +  L  V  +         + +  F +    L  +G   ++ +  L   E+Q L+     
Sbjct: 262 MKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATT 320
Query: 281 LKASIEKGIQF 291
           L   I+K ++F
Sbjct: 321 L-WDIQKDLKF 330

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 17/251 (6%)
Query: 49  GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIA 108
           GS +V+I AG  ++ G +R +L   N  I K +   I  + P  ++ ++SNPV+    +A
Sbjct: 88  GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA 147
Query: 109 AEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTILPLFSQ 168
              +K +G    + +     LD  R +     +            IG H G ++  ++S 
Sbjct: 148 ---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSG 203
Query: 169 ATPKS--------NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC 220
               S         N   ++ K L K   D   EV++    KG  + ++  + A  A+  
Sbjct: 204 MNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL---KGYTSWAIGLSVADLAETI 260
Query: 221 LMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPE 280
           +  L  V  +         + +  F +    L  +G   ++ +  L   E+Q L+     
Sbjct: 261 MKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATT 319
Query: 281 LKASIEKGIQF 291
           L   I+K ++F
Sbjct: 320 L-WDIQKDLKF 329

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 45  KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAI-ANYCPHALVNMISNPVNS 103
           +  E  D  ++    PR PGM R  L +IN  I      A+ A    +  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKXXXXXXXXXXXXIGGHAGVTIL 163
              I     K A     K    +T LD  RAK   A K            I G+   T +
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 220
Query: 164 PLFSQATPKSNNLSDEEIKALTKRTQ 189
           P F  A      +    +K + KRT+
Sbjct: 221 PDFLNA-----KIDGRPVKEVIKRTK 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-162
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-161
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-156
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	1e-49
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-42
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-42
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	2e-42
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	3e-42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	9e-42
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	2e-41
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-41
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	2e-40
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	5e-40
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	5e-40
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	9e-40
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	7e-39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	2e-38
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-37
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	1e-37
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	2e-37
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	3e-37
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	1e-36
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	2e-36
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-35
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-35
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	2e-35
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	4e-35
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	2e-34
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	3e-34
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	5e-33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	7e-33
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	2e-32
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-31
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-30
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	6e-30
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-28
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	4e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  453 bits (1168), Expect = e-162
 Identities = 194/293 (66%), Positives = 228/293 (77%), Gaps = 1/293 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           MK++PLVS L LYD+ N PGV AD+SH+++ A V G+ G++QL  AL G D++I+PAGVP
Sbjct: 28  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLF INAGIVK+LC  IA  CP A+VN+ISNPVNSTVPIAAEVFKKAGTYD 
Sbjct: 88  RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDP 147

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
           K+L GVT LDVVRA TF A  + +   +V+VPV+GGHAGVTILPL SQ  P  ++ + EE
Sbjct: 148 KRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-SSFTQEE 206

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL GL G   ++EC FV S V
Sbjct: 207 ISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV 266

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           TELPFFASKVRLG+NG +EV  LGPL++YE+ GLE  K EL  SIEKG+ F  
Sbjct: 267 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 319

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  450 bits (1160), Expect = e-161
 Identities = 169/295 (57%), Positives = 216/295 (73%), Gaps = 1/295 (0%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct: 20  LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFN NA IV +L  A A +CP A++ +ISNPVNST+PI AEVFKK G Y+ 
Sbjct: 80  RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNP 139

Query: 121 KKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE 180
            K+FGVTTLD+VRA  F A    +  A V+VPVIGGHAG TI+PL SQ TPK  +   ++
Sbjct: 140 NKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPK-VDFPQDQ 198

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  
Sbjct: 199 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE 258

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANRS 295
           T+ P+F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG +F    
Sbjct: 259 TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNM 313

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  438 bits (1128), Expect = e-156
 Identities = 154/291 (52%), Positives = 196/291 (67%), Gaps = 4/291 (1%)

Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S LSLYDIA  TPGVA D+SHI +  +++G++GE+    ALEG+DVV+I AGV RKP
Sbjct: 25  PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED-ATPALEGADVVLISAGVARKP 83

Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DLFN+NAGIVK+L   +A  CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84  GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143

Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKA 183
           FGVTTLD++R+ TF A        EV VPVIGGH+GVTILPL SQ      + +++E+  
Sbjct: 144 FGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSFTEQEVAD 201

Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTEL 243
           LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +  L G   +VEC +V+      
Sbjct: 202 LTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA 261

Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
            FF+  + LGKNG +E   +G LS +E+  LE +   LK  I  G +F N+
Sbjct: 262 RFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  166 bits (423), Expect = 1e-49
 Identities = 69/302 (22%), Positives = 113/302 (37%), Gaps = 30/302 (9%)

Query: 6   LVSSLSLYDIA-NTP-GVAADVSHINSPA-QVEGYAGEEQLGKALEGSDVVIIPAGVPRK 62
           L  +L LYD       GVA ++ H       +   +  +   +AL  +  ++   G PRK
Sbjct: 33  LTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIK---EALTDAKYIVSSGGAPRK 89

Query: 63  PGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNSTVPIAAEVFKKAGTYDEK 121
            GMTR+DL   NA I   L   I +YCP    V +I NP + T  +       +G     
Sbjct: 90  EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPS 145

Query: 122 KLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTILPLFSQAT---------P 171
           ++  +  LD  R ++  A    +  + V N    GGH G  +    S A           
Sbjct: 146 QVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLI 204

Query: 172 KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV 231
            ++ L++E+   L +R   GG  +++ +    S+  S +Y       A + G        
Sbjct: 205 GTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSPSYVSIEMIRAAMGGEAFR--WP 260

Query: 232 ECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL----ESLKPELKASIEK 287
              +V     E    A +  + K+G          ++ E+  L      L       I  
Sbjct: 261 AGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEAERAALKESYSHLAKLRDEVIAM 320

Query: 288 GI 289
           GI
Sbjct: 321 GI 322

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  147 bits (374), Expect = 1e-42
 Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 55/303 (18%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPAGVPRK 62
           L DI      G A D+           +V G   YA           SDV+++ +G PRK
Sbjct: 31  LLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DTANSDVIVVTSGAPRK 83

Query: 63  PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
           PGM+R+DL  +NA I ++  +  A   P+A++ M++NP++        +  +   + +++
Sbjct: 84  PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKER 139

Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLS 177
           + G    LD  R +TF A +  V V +V   ++GGH G  ++PL   +     P S  ++
Sbjct: 140 VIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIA 198

Query: 178 DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLMGL 224
            + +  + +RT+ GG E+V      GSA  + A A A   +A              L G 
Sbjct: 199 PDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQ 257

Query: 225 NGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKAS 284
            G+ DI              +F   V LG  G +++L L PL++ E   L +    ++A+
Sbjct: 258 YGLNDI--------------YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302

Query: 285 IEK 287
           ++ 
Sbjct: 303 LDT 305

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  147 bits (373), Expect = 2e-42
 Identities = 79/302 (26%), Positives = 133/302 (44%), Gaps = 51/302 (16%)

Query: 12  LYDIANTPGVAA----DVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           L DI            D+          A + G +           SDVV+I AG+ RKP
Sbjct: 37  LVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYA----DTADSDVVVITAGIARKP 92

Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM+RDDL   N+ I+KS+   IA + P+A++ +++NPV+           K   + ++++
Sbjct: 93  GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERV 148

Query: 124 FGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLSD 178
            G    LD  R +TF A ++N+ V ++   V+GGH G  ++PL   +     P    +  
Sbjct: 149 IGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPK 207

Query: 179 EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLMGLN 225
           E ++A+ +RT+ GG E+V    G GSA  + A +     +A              L G  
Sbjct: 208 ERLEAIVERTRKGGGEIVG-LLGNGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEY 266

Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285
           G  D+              +    V LG NG ++++ L  L   EK+ L+     ++  +
Sbjct: 267 GYSDL--------------YLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNVM 311

Query: 286 EK 287
           + 
Sbjct: 312 KV 313

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  147 bits (373), Expect = 2e-42
 Identities = 71/303 (23%), Positives = 121/303 (39%), Gaps = 56/303 (18%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPAGVPRK 62
           L         G A D++H    +    ++ G   Y         + GSD+V++ AG+ RK
Sbjct: 28  LIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-------DMRGSDIVLVTAGIGRK 80

Query: 63  PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
           PGMTR+ L   NA  +  L   I  Y   A+V + +NPV+        V  K   +  ++
Sbjct: 81  PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRER 136

Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNNLS 177
           + G    LD  R   + + K+ V    VN  V+G H G  + P+   ++    P  + +S
Sbjct: 137 VIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMS 195

Query: 178 DEEIKALTKRTQDGGTEVVEAKAGK-----GSATLSMAYAGAVFAD--------ACLMGL 224
            EEI+ +   T + G ++ E +         +  +      A+  D          L G 
Sbjct: 196 KEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLT--VEAIKRDSKRIYPYSLYLQGE 253

Query: 225 NGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKAS 284
            G  DI                     +GK+G + ++ L PL++ EK+  +     +K  
Sbjct: 254 YGYNDI--------------VAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKL 298

Query: 285 IEK 287
           +E 
Sbjct: 299 VET 301

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  146 bits (372), Expect = 3e-42
 Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 50/306 (16%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
           +   + + DI +    G A D+           +V G           E SDV II AG+
Sbjct: 24  VAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYG----PTEDSDVCIITAGL 79

Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
           PR PGM+RDDL   N  IV  +        P + + +++NP++    +   V  +A  + 
Sbjct: 80  PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTYVAYEASGFP 135

Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSN 174
             ++ G+   LD  R ++F A +++V V +V   ++GGH G T++PL    T    P   
Sbjct: 136 TNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQ 194

Query: 175 NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CL 221
            + D  I+ + +RT+  G E+V+      SA  +   A A   +A               
Sbjct: 195 LIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEAILKDNKRILPCAAYC 252

Query: 222 MGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPEL 281
            G  G+ D+              F    V+LG  G +EV+ +  L   EK  L++    +
Sbjct: 253 DGEYGLDDL--------------FIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHV 297

Query: 282 KASIEK 287
            ++++ 
Sbjct: 298 HSNLDD 303

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  145 bits (368), Expect = 9e-42
 Identities = 83/309 (26%), Positives = 136/309 (44%), Gaps = 55/309 (17%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIP 56
           L   L L D+      G A D+           +V G   YA           SD+VII 
Sbjct: 24  LARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-------DTANSDIVIIT 76

Query: 57  AGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAG 116
           AG+PRKPGMTR+DL   NAGIVK +   I  +  + ++ ++SNP++    I   V     
Sbjct: 77  AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRS 132

Query: 117 TYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P 171
              ++++ G+   LD  R ++F A ++ V + ++N  V+GGH G  ++P+    T    P
Sbjct: 133 GLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIP 191

Query: 172 KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA------------ 219
            S+ L  E I  L +RT++GG E+VE    +GSA  + A +     ++            
Sbjct: 192 ISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCA 250

Query: 220 -CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
             L G  G+                 F    V+LG+NG +++  +  L   +   L+   
Sbjct: 251 VGLEGQYGIDKT--------------FVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSA 295

Query: 279 PELKASIEK 287
             +  + + 
Sbjct: 296 KIVDENCKM 304

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  144 bits (366), Expect = 2e-41
 Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 54/305 (17%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           L+DIA     G A D++H      S ++V G          + GSDVVII A +P +P  
Sbjct: 33  LFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYA----DISGSDVVIITASIPGRPKD 88

Query: 66  TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
            R +L   NA I+ S+   +  YCP+A V  I+NP++    +    F+K       K+ G
Sbjct: 89  DRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVCG 144

Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------PKSNN 175
           +   LD  R +TF A    V  ++V+  VIGGH G  ++P  S  +          K   
Sbjct: 145 MAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGL 203

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLM 222
           ++ E+I  +   T+    EV +     G+A  + A A    A+A                
Sbjct: 204 ITQEQIDEIVCHTRIAWKEVADNL-KTGTAYFAPAAAAVKMAEAYLKDKKAVVPCSAFCS 262

Query: 223 GLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
              GV  I            +P       +GKNG +++L L  L+  E++ L     E+ 
Sbjct: 263 NHYGVKGI---------YMGVP-----TIIGKNGVEDILEL-DLTPLEQKLLGESINEVN 307

Query: 283 ASIEK 287
              + 
Sbjct: 308 TISKV 312

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  144 bits (366), Expect = 2e-41
 Identities = 91/305 (29%), Positives = 137/305 (44%), Gaps = 54/305 (17%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           ++DI      G A D++H    I SPA++ G    E     L+ SDVVII AGVPRKP M
Sbjct: 43  MFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYE----YLQNSDVVIITAGVPRKPNM 98

Query: 66  TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
           TR DL  +NA IV S+   +  YCP+A V  I+NP++         FK+       K+ G
Sbjct: 99  TRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVCG 154

Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P-----KSNN 175
           +   LD  R +   +  + V  ++V+  V+GGH G  ++PL S  T          +   
Sbjct: 155 MSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGK 213

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLM 222
           ++  +I  + K+T  GG E+VE     GSA  + A +    A A              L 
Sbjct: 214 ITHSQINEIIKKTAFGGGEIVELL-KTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLT 272

Query: 223 GLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           G   V ++              F    V +GKNG ++V+ +  LSD EK         ++
Sbjct: 273 GQYNVNNL--------------FVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQ 317

Query: 283 ASIEK 287
             ++ 
Sbjct: 318 NLVQD 322

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  142 bits (360), Expect = 2e-40
 Identities = 85/305 (27%), Positives = 132/305 (43%), Gaps = 54/305 (17%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           L+DIA     G   D++         A+  G         A+EG+DVVI+ AGVPRKPGM
Sbjct: 36  LFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYA----AIEGADVVIVTAGVPRKPGM 91

Query: 66  TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
           +RDDL  IN  +++ +   I  Y P A V  I+NP++          +K       K+ G
Sbjct: 92  SRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVWALQKFSGLPAHKVVG 147

Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P-----KSNN 175
           +   LD  R + F + + NV V +V V V+GGH G +++PL   +T    P     K   
Sbjct: 148 MAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGW 206

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA-------------CLM 222
            S +++  + +RT+DGG E+V      GSA  + A +    A++              L 
Sbjct: 207 TSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLS 265

Query: 223 GLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
           G  GV D+              +      +G NG + ++ +  L   EK   +     + 
Sbjct: 266 GQYGVKDM--------------YVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVASVA 310

Query: 283 ASIEK 287
              E 
Sbjct: 311 GLCEA 315

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  140 bits (356), Expect = 5e-40
 Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 45/302 (14%)

Query: 6   LVSSLSLYDIANTPGV----AADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +   +   DI +        AAD +H  +  +      G     +   GSDVV+I AG+P
Sbjct: 25  IADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---EDTAGSDVVVITAGIP 81

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           R+PG TR DL   NA I++ + +++  +    +    SNPV+    +      +AG    
Sbjct: 82  RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSR 137

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--PKSNNLS 177
           +++ G    LD  R +   + + + PV  V   ++G H G   +P+FS+ +        S
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFS 196

Query: 178 DEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD--------ACLMGLN 225
            +E + L    Q+   +V+E K     G       M    A+  D          L G  
Sbjct: 197 GDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHM--VEAILHDTGEVLPASVKLEGEF 254

Query: 226 GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI 285
           G  D                F   V LG NG +E++    L DYE+  +     +L    
Sbjct: 255 GHEDT--------------AFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 299

Query: 286 EK 287
           +K
Sbjct: 300 DK 301

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  141 bits (357), Expect = 5e-40
 Identities = 89/293 (30%), Positives = 137/293 (46%), Gaps = 29/293 (9%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           L+DIA     G A D+           +V G    +     LE SDVVI+ AGVPRKPGM
Sbjct: 34  LFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYK----DLENSDVVIVTAGVPRKPGM 89

Query: 66  TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG 125
           +RDDL  IN  +++++   I + CP+A V  I+NP++    I   + +K     + K+ G
Sbjct: 90  SRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVNMLQKFSGVPDNKIVG 145

Query: 126 V-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---------PKSNN 175
           +   LD  R +TF A ++NV V +V   V+GGH G T++PL   +           K   
Sbjct: 146 MAGVLDSARFRTFLADELNVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGK 204

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV-PDIVECT 234
           L  E + A+  RT+ GG E+V      GSA  + A AG   A++ L     + P   +  
Sbjct: 205 LKQERLDAIVSRTRSGGGEIVALL-KTGSAYYAPAAAGIQMAESFLKDKKMILPCAAKVK 263

Query: 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
                + E  F      +  NG    + +  +SD E++ L+     +K   + 
Sbjct: 264 AGMYGLDEDLFVGVPTEISANGV-RPIEV-EISDKEREQLQVSINAIKDLNKA 314

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  139 bits (354), Expect = 9e-40
 Identities = 72/315 (22%), Positives = 124/315 (39%), Gaps = 63/315 (20%)

Query: 6   LVSSLSLYDIAN----TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
            +  L L    +      G+  D+        S A +  Y   ++  + ++ SDVVII +
Sbjct: 25  FMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI--YVESDENLRIIDESDVVIITS 82

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           GVPRK GM+R DL   NA IV      IA  C   +  +I+NPV+    +          
Sbjct: 83  GVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VMTYKALVDSK 137

Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
           ++  ++FG+ T LD +R K   A    V + EV   +IG H G +++PL S  +      
Sbjct: 138 FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPI 196

Query: 171 PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA-----GAVFADACL 221
            K     +  I  + +  +  G +++  K     G  +A L++          +   +  
Sbjct: 197 QKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAY 256

Query: 222 M-----GLN----GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQ 272
           +     G+     GVP                     V++G++G +EV+ +  L   E  
Sbjct: 257 VDGEFDGIRDVCIGVP---------------------VKIGRDGIEEVVSI-ELDKDEII 294

Query: 273 GLESLKPELKASIEK 287
                   +K   E+
Sbjct: 295 AFRKSAEIIKKYCEE 309

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  138 bits (350), Expect = 7e-39
 Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 58/310 (18%)

Query: 12  LYDIAN--TPGVAADVSHINSPAQVEG----YAGEEQLGKALEGSDVVIIPAGVPRKPGM 65
           LYD+      G A D+SH+     V         E     AL G+D VI+ AG+ + PG 
Sbjct: 38  LYDVVKGMPEGKALDLSHV---TSVVDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGK 94

Query: 66  -----TRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
                +R+DL   N+ I++ +   I  YCP   + +++NP++       +V  +A     
Sbjct: 95  PDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPT 150

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----P---- 171
             + G+   LD  R + + A  ++V   +V   VIG H G  ++PL    T    P    
Sbjct: 151 NMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKF 209

Query: 172 -KSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA----------- 219
            K   +++++++ + + T+  G E+V    G+GSA  + A +    A +           
Sbjct: 210 IKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPC 268

Query: 220 --CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
                G  G+ D+              F      +G  G + V+ L  L++ EK+  +  
Sbjct: 269 SVYCNGEYGLKDM--------------FIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKS 313

Query: 278 KPELKASIEK 287
             ++ A  + 
Sbjct: 314 VDDVMALNKA 323

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  136 bits (346), Expect = 2e-38
 Identities = 81/321 (25%), Positives = 129/321 (40%), Gaps = 80/321 (24%)

Query: 12  LYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIPAGVPRK 62
           L+DI      G A D SH      S  +V G   Y         L G+DVVI+ AG  + 
Sbjct: 33  LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYD-------DLAGADVVIVTAGFTKA 85

Query: 63  PGMT-----RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           PG +     RDDL  +N  I+  +   I   CP+A + +++NPV+    +  ++  +   
Sbjct: 86  PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSG 141

Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
             + K+ G+   LD  R K + + K+NV   +VN  ++G H G  ++ L    T      
Sbjct: 142 VPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPL 200

Query: 171 ---PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA-----GAVFAD 218
                +  +SD E++A+  RT +   E+V   A       +A + MA +       V   
Sbjct: 201 QEFINNKLISDAELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLIC 260

Query: 219 ACLM----GLN----GVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYE 270
           + L+    G +    G P                     V LG NG ++V+ L  L+  E
Sbjct: 261 STLLEGQYGHSDIFGGTP---------------------VVLGANGVEQVIEL-QLNSEE 298

Query: 271 KQGL----ESLKPELKASIEK 287
           K          K  +KA    
Sbjct: 299 KAKFDEAIAETK-RMKALAHH 318

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  134 bits (341), Expect = 1e-37
 Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 56/314 (17%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
           +   L + D+      G   D++H       P +     G     +  + +D+V I AG 
Sbjct: 29  ITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKT--SYGTY---EDCKDADIVCICAGA 83

Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
            +KPG TR +L   N  I K + + +       +  + +NPV+    I      K     
Sbjct: 84  NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLP 139

Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT-------- 170
           ++++ G  TTLD  R +   +         V   +IG H G T LP++S A         
Sbjct: 140 KERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSE 198

Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------ 218
              K++    EE+  +    ++    ++E K     G   +   +    A+  +      
Sbjct: 199 LVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARI--TKAILHNENSILT 256

Query: 219 --ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES 276
               L G  G  D+              +      + + G   +  L  L++ EK+    
Sbjct: 257 VSTYLDGQYGADDV--------------YIGVPAVVNRGGIAGITEL-NLNEKEKEQFLH 301

Query: 277 LKPELKASIEKGIQ 290
               LK  ++    
Sbjct: 302 SAGVLKNILKPHFA 315

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  134 bits (340), Expect = 1e-37
 Identities = 67/312 (21%), Positives = 117/312 (37%), Gaps = 56/312 (17%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
           +   + L D       G A D +H       P  +  + G+         +D+V+I AG 
Sbjct: 30  IADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI--WHGDY---DDCRDADLVVICAGA 84

Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
            +KPG TR DL + N  I +S+  ++       L  + +NPV+    I      K     
Sbjct: 85  NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLP 140

Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT-------- 170
            +++ G  T LD  R +       +V    V+  +IG H G T LP++SQA         
Sbjct: 141 HERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRK 199

Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------ 218
                   + ++++ +    +D   +++E K     G       +    A+  +      
Sbjct: 200 LVESKGEEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARV--TRAILHNENAILT 257

Query: 219 --ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES 276
             A L GL G  D+              +      + +NG  EV+ +  L+D EK     
Sbjct: 258 VSAYLDGLYGERDV--------------YIGVPAVINRNGIREVIEI-ELNDDEKNRFHH 302

Query: 277 LKPELKASIEKG 288
               LK+ + + 
Sbjct: 303 SAATLKSVLARA 314

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  134 bits (339), Expect = 2e-37
 Identities = 68/311 (21%), Positives = 130/311 (41%), Gaps = 54/311 (17%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +     + D+    T G A D+       +P ++  Y+GE       + +D+V+I AG P
Sbjct: 29  IAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI--YSGEY---SDCKDADLVVITAGAP 83

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG +R DL N N  I+ S+   + +     +  + +NPV+    I      K   + +
Sbjct: 84  QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPK 139

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
           +++ G  T+LD  R +     + NV    V+  ++G H G +    +S AT         
Sbjct: 140 ERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDV 198

Query: 171 PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD-------- 218
            K   +SD+++  L    ++   +++  K     G G+A + +  + A+  D        
Sbjct: 199 AKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRI--SKAILRDENAVLPVG 256

Query: 219 ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLK 278
           A + G  G+ DI              +  +   +G  G  +++   PLS  E + ++   
Sbjct: 257 AYMDGQYGLNDI--------------YIGTPAIIGGTGLKQIIES-PLSADELKKMQDSA 301

Query: 279 PELKASIEKGI 289
             LK  +  G+
Sbjct: 302 ATLKKVLNDGL 312

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  133 bits (338), Expect = 3e-37
 Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 60/322 (18%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
               + L D+      G A D+ H       A +  YAG+      L+GSDVVI+ AGVP
Sbjct: 24  FAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI--YAGDY---ADLKGSDVVIVAAGVP 78

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG TR  L   NA ++K +   ++ Y P ++V +++NPV+    +    F K    D 
Sbjct: 79  QKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDP 134

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
           +K+FG  T LD  R +T  A         V+V VIG H G + +P++S A          
Sbjct: 135 RKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNM 193

Query: 171 -PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------- 218
                    + ++   ++T+    E++E K         A   +    ++F D       
Sbjct: 194 CQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADI--VESIFFDEKRVLTL 251

Query: 219 -ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL--- 274
              L    GV D+                +  V LGK+G + +L L  L++ E +     
Sbjct: 252 SVYLEDYLGVKDL--------------CISVPVTLGKHGVERILEL-NLNEEELEAFRKS 296

Query: 275 -ESLKPELKASIEKGIQFANRS 295
              LK      I         +
Sbjct: 297 ASILK-NAINEITAEENKHQNT 317

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  131 bits (333), Expect = 1e-36
 Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 64/316 (20%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG--YAGEEQLGKALEGSDVVIIPA 57
           +V  L + D+      G   D+ H      +  +V+   Y+           +D+V+I A
Sbjct: 30  IVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYS-------DCHDADLVVICA 82

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           G  +KPG TR DL + N  I KS+   +       +  + +NPV+    I A    K   
Sbjct: 83  GAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSG 138

Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
             ++++ G  T LD  R +   +   +V    V+  +IG H G T LP++S A       
Sbjct: 139 LPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPL 197

Query: 171 ---PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD----- 218
               +       +I+ +  +T+D   ++++AK     G       +    A+F +     
Sbjct: 198 KTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARI--TEAIFRNEDAVL 255

Query: 219 ---ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL- 274
              A L G     D+              +      + +NG   V+ + PL+D E+    
Sbjct: 256 TVSALLEGEYEEEDV--------------YIGVPAVINRNGIRNVVEI-PLNDEEQSKFA 300

Query: 275 ---ESLKPELKASIEK 287
              ++LK ++ A  E+
Sbjct: 301 HSAKTLK-DIMAEAEE 315

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  131 bits (333), Expect = 2e-36
 Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 55/312 (17%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +   + + DI    T G A D+S+     SP ++  Y+ E       + +D+V+I AG P
Sbjct: 33  IAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI--YSAEY---SDAKDADLVVITAGAP 87

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG TR DL N N  I+KS+   I +   + +  + +NPV+    I      K   + +
Sbjct: 88  QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPK 143

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
            ++ G  T+LD  R +   A  VNV    V+  ++G H G T  P++S A          
Sbjct: 144 NRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEW 202

Query: 171 -PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD------- 218
                 + ++++  + +  +D   E+++ K     G  +A   +  + A+  D       
Sbjct: 203 VKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI--SKAILNDENAVLPL 260

Query: 219 -ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL 277
              + G  G+ DI              +  +   + +NG   +L + PL+D+E++ ++  
Sbjct: 261 SVYMDGQYGLNDI--------------YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 305

Query: 278 KPELKASIEKGI 289
             +LK  +    
Sbjct: 306 ASQLKKVLTDAF 317

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  129 bits (327), Expect = 1e-35
 Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 33/300 (11%)

Query: 9   SLSLYDIANTP----GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
            L L DI        GV  ++     P  ++     ++   A +  DV I+   +PR+ G
Sbjct: 36  ILVLLDITPMMGVLDGVLMELQDCALP-LLKDVIATDKEEIAFKDLDVAILVGSMPRRDG 94

Query: 65  MTRDDLFNINAGIVKSLCTAIANYCPHA-LVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           M R DL   N  I K    A+  Y   +  V ++ NP N+    A+   K A +  ++  
Sbjct: 95  MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENF 151

Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----------PKS 173
             +T LD  RAK   A K+ V   +V   +I G+   T  P  + A            ++
Sbjct: 152 SCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEA 211

Query: 174 NNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP--DIV 231
                          Q  G  V++A+    SA      A     D       G P  + V
Sbjct: 212 VKDDSWLKGEFITTVQQRGAAVIKAR-KLSSA----MSAAKAICDHVRDIWFGTPEGEFV 266

Query: 232 ECTFVQSS-----VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
               + S      V +   ++  V +       V GL P++D+ ++ ++    EL    E
Sbjct: 267 SMG-IISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKE 324

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  128 bits (325), Expect = 2e-35
 Identities = 61/300 (20%), Positives = 107/300 (35%), Gaps = 58/300 (19%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +   + L D+        A D+ H      P  V  +AG       LEG+  V++ AGV 
Sbjct: 24  VAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV--WAGSY---GDLEGARAVVLAAGVA 78

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           ++PG TR  L + NA +   +   +    P A++ + +NPV+    +  +V         
Sbjct: 79  QRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPP 134

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
            ++ G  T LD  R +   A  + V    V+  V+G H G + + ++S A          
Sbjct: 135 GRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEF 193

Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA--------- 219
              +   LS E+   + +  +     ++E   GKG+    +    A    A         
Sbjct: 194 AEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARLVRAILTDEKGVY 250

Query: 220 ----CLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
                   + GV ++                +    LG  G    +    LS  E+  L 
Sbjct: 251 TVSAFTPEVAGVLEV--------------SLSLPRILGAGGVAGTVYP-SLSPEERAALR 295

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  128 bits (325), Expect = 2e-35
 Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 64/316 (20%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEG---YAGEEQLGKALEGSDVVIIPA 57
           +   + L DIA         D+ H         ++G                +D+V+I A
Sbjct: 31  IAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-------ICRDADMVVITA 83

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           G  +KPG +R +L      I+K++   +    P+A+  +I+NPV+    IA  V +K   
Sbjct: 84  GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTG 139

Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT------ 170
             E ++FG  T LD  R +   A +  V V  V+  + G H G + +PL+  AT      
Sbjct: 140 LPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPM 198

Query: 171 ------PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSAT----LSMAY-AGAVFAD- 218
                 P  + L  ++ + + +  ++   +++    GKG+      +S      AV  D 
Sbjct: 199 SDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GKGATNYAIGMSGVDIIEAVLHDT 255

Query: 219 -------ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEK 271
                  + L   +G+ DI                +    L + G +  +   P+SD E 
Sbjct: 256 NRILPVSSMLKDFHGISDI--------------CMSVPTLLNRQGVNNTINT-PVSDKEL 300

Query: 272 QGLESLKPELKASIEK 287
             L+     LK +  +
Sbjct: 301 AALKRSAETLKETAAQ 316

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  127 bits (323), Expect = 4e-35
 Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 63/316 (19%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             + L L D+      G A D++H         +  YAG+      ++  DV+++ AG  
Sbjct: 31  TANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL--YAGDY---SDVKDCDVIVVTAGAN 85

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPG TR DL   N  I K +   I  Y  H ++ ++SNPV+    I   + +K      
Sbjct: 86  RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPV 141

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
            K+ G  T LD +R +   + K+ V V  V+  +IG H G + LPL+S            
Sbjct: 142 GKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEY 200

Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSAT----LSMAY-AGAVFAD----- 218
                 N ++E+ K + +  +  G  +++    KG+      +S+      +  +     
Sbjct: 201 IDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGATYYGIAVSINTIVETLLKNQNTIR 257

Query: 219 ---ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL- 274
                + G+ G+ D+                +    +   G  EVL    L+  E++ L 
Sbjct: 258 TVGTVINGMYGIEDV--------------AISLPSIVNSEGVQEVLQF-NLTPEEEEALR 302

Query: 275 ---ESLKPELKASIEK 287
              E +K ++   ++ 
Sbjct: 303 FSAEQVK-KVLNEVKN 317

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  126 bits (318), Expect = 2e-34
 Identities = 64/294 (21%), Positives = 102/294 (34%), Gaps = 27/294 (9%)

Query: 7   VSSLSLYDIANTP------GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
              L L +I N        GV  ++     P  + G         A + +DV ++    P
Sbjct: 36  PVILQLLEIPNEKAQKALQGVMMEIDDCAFP-LLAGMTAHADPMTAFKDADVALLVGARP 94

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
           R PGM R DL   NA I      AI      +  V ++ NP N+   IA    K A +  
Sbjct: 95  RGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM---KSAPSLP 151

Query: 120 EKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PKSNN 175
            K    +  LD  RA +  A K   PV+ +    + G+   T+   +  A        + 
Sbjct: 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDM 211

Query: 176 LSDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC 233
           ++D+              G  +++A+ G  SA  S A A        ++G  G       
Sbjct: 212 INDDAWNRDTFLPTVGKRGAAIIDAR-GVSSA-ASAANAAIDHIHDWVLGTAG--KWTTM 267

Query: 234 TFVQSS----VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA 283
             + S     + E   F   V         V GL  +  + ++ +     EL  
Sbjct: 268 G-IPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNELLE 319

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  126 bits (318), Expect = 3e-34
 Identities = 63/300 (21%), Positives = 116/300 (38%), Gaps = 56/300 (18%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
           L   L+L D+      G   D+ H    + +P  V   + +         S +VII AG 
Sbjct: 43  LADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV--SSKD---YSVTANSKLVIITAGA 97

Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
            ++ G +R +L   N  I K +   +  Y P   + ++SNPV+    I   V  K   + 
Sbjct: 98  RQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFP 153

Query: 120 EKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT-------- 170
           + ++ G    LD  R +     ++ V     +  V+G H G + +P++S           
Sbjct: 154 KNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKS 212

Query: 171 ---PKSNNLSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD----- 218
                  +   E+ K + K+  D   EV++ K       G +   +  A ++  +     
Sbjct: 213 LNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADL--AESIMKNLRRVH 270

Query: 219 ---ACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE 275
                + GL G+ + V           +P       LG+NG  +V+ +  L+  E+  L+
Sbjct: 271 PISTMIKGLYGIKEDV--------FLSVP-----CILGQNGISDVVKV-TLTPDEEARLK 316

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  122 bits (308), Expect = 5e-33
 Identities = 62/255 (24%), Positives = 98/255 (38%), Gaps = 24/255 (9%)

Query: 45  KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHAL-VNMISNPVNS 103
            A + +D  ++    PRK GM R DL  +N  I      A+A      + V ++ NP N+
Sbjct: 76  VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT 135

Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTI 162
              IA    K A   + +    +T LD  RAK   A K    V  +  + V G H   T+
Sbjct: 136 NALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNH-SSTM 191

Query: 163 LPLFSQAT----PKSNNLSDEEIK-ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA 217
            P    A     P    +  E  +          G  +++A+ G  SA    A A     
Sbjct: 192 FPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA----ASAANAAI 246

Query: 218 DACLMGLNGVP--DIVECTFVQSS----VTELPFFASKVRLGKNGADEVLGLGPLSDYEK 271
           +       G P  D V    V S     + E   ++  V   K+GA  V+    ++++ +
Sbjct: 247 EHIRDWALGTPEGDWVSMA-VPSQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFAR 304

Query: 272 QGLESLKPELKASIE 286
           + +E    EL   +E
Sbjct: 305 KRMEITAQELLDEME 319

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  121 bits (306), Expect = 7e-33
 Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 59/308 (19%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG---YAGEEQLGKALEGSDVVIIP 56
            V  ++L DIA     G A D++H    I+   ++ G   Y+        L+GS+++++ 
Sbjct: 24  DVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS-------LLKGSEIIVVT 76

Query: 57  AGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAG 116
           AG+ RKPGMTR DL + NAGI+K +   I    P + + +++NP++    +   +  K  
Sbjct: 77  AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKES 132

Query: 117 TYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN 175
                ++FG+   LD  R K          +      +IG H G ++    S A      
Sbjct: 133 GKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKSLADFD--- 186

Query: 176 LSDEEIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD--------ACLMG 223
             + + +A+    +    EV++ K     G   A   M    AV  D          L G
Sbjct: 187 -GEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM--VKAVVEDTGEIIPTSMILQG 243

Query: 224 LNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA 283
             G+ ++                    +LGKNGA EV  +  LSD E + L +    L+ 
Sbjct: 244 EYGIENV--------------AVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRE 287

Query: 284 SIEKGIQF 291
            +E+ + +
Sbjct: 288 RLEE-LGY 294

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  121 bits (306), Expect = 2e-32
 Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 17/250 (6%)

Query: 45  KALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNS 103
           +  E  D  ++    PR PGM R  L +IN  I      A+      +  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163

Query: 104 TVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTIL 163
              I     K A     K    +T LD  RAK   A K  V   +V+   I G+   T +
Sbjct: 164 NALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 220

Query: 164 PLFSQAT----PKSNNLSDEEI--KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFA 217
           P F  A     P    +   +   +  T   Q  G  +++   G+ SA  S A + A   
Sbjct: 221 PDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRSSA-ASTAVSIADAI 278

Query: 218 DACLMGLNGVPDIVEC-TFVQSSVTELP---FFASKVRLGKNGADEVLGLGPLSDYEKQG 273
            + +       D      +   +   +     F+   R   +G  E+       D+  + 
Sbjct: 279 KSLVTPTPE-GDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWER 337

Query: 274 LESLKPELKA 283
           ++  + EL A
Sbjct: 338 IKKSEAELLA 347

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  117 bits (296), Expect = 2e-31
 Identities = 65/289 (22%), Positives = 111/289 (38%), Gaps = 42/289 (14%)

Query: 6   LVSSLSLYDIANTP--GVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             S L L D         A D++H   ++   +V  + G       L  + VVI+ AG  
Sbjct: 24  SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRV--WHGGH---SELADAQVVILTAGAN 78

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG +R DL   NA I + L   I    P A++ + SNPV+    +  ++  +      
Sbjct: 79  QKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQL--APG 132

Query: 121 KKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT--------- 170
           + + G  T LD  R +   A    V     +  V+G H G + +  +S A          
Sbjct: 133 QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH-GDSEVLAWSSAMVAGMPVADF 191

Query: 171 --PKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV- 227
              ++   +++    + + T++    ++E   GK +    +  A A   +A L     V 
Sbjct: 192 MQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATYYGIGAALARITEAVLRDRRAVL 248

Query: 228 PDIVECTFVQSSVTELPFFASK-VRLGKNGADEVLGLGPLSDYEKQGLE 275
                   V +   E     S    +G+ G    L    L+  E+Q LE
Sbjct: 249 T-------VSAPTPEYGVSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLE 289

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  116 bits (292), Expect = 1e-30
 Identities = 46/229 (20%), Positives = 77/229 (33%), Gaps = 25/229 (10%)

Query: 6   LVSSLSLYDIAN--TPGVAADVSH----INSPAQVEG--YAGEEQLGKALEGSDVVIIPA 57
           L   ++L D+      G   D+ H    +++   V G  Y+          GS +V+I A
Sbjct: 45  LADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-------VSAGSKLVVITA 97

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           G  ++ G +R +L   N  I K +   I  + P  L  +             +   K   
Sbjct: 98  GARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNKQDWKLSG 153

Query: 118 YDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT----PK 172
               ++ G    LD  R +     ++ V    V   VIG H G ++  ++S        K
Sbjct: 154 LPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-GDSVPSVWSGMWDAKLHK 212

Query: 173 SNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 221
               S  E+  L   T      VV       +       + A  A   +
Sbjct: 213 DVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIM 261

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  113 bits (286), Expect = 6e-30
 Identities = 54/303 (17%), Positives = 94/303 (31%), Gaps = 60/303 (19%)

Query: 6   LVSSLSLYDIA-NTPGVAADVSHINSPAQVEG--YAGEEQLGKALEGSDVVIIPAGVPRK 62
           +   L L D++  T G   D+   N P        +       A   S VVI        
Sbjct: 38  IADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLS-------ASAHSKVVIFTVN-SLG 89

Query: 63  PGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKK 122
              +  D+   N  + ++L  A+ +Y  H+++ + S P    V I   V  K  T+   +
Sbjct: 90  SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP----VEIMTYVTWKLSTFPANR 145

Query: 123 LFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEI 181
           + G+   LD  R +      +    +   V VIG   G   +  +S              
Sbjct: 146 VIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GEDKVLTWSGQEE-------VVS 197

Query: 182 KALTKRTQDGGTEVVEAKA----GKGSATLSMAYAGAVFAD--------ACLMGLNGVPD 229
                +  +   E++  K       G +   M    ++  +        A   G   +  
Sbjct: 198 HTSQVQLSNRAMELLRVKGQRSWSVGLSVADM--VDSIVNNKKKVHSVSALAKGYYDINS 255

Query: 230 IVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE--K 287
            V             F +    LG NG  EV+    L +            L++S     
Sbjct: 256 EV-------------FLSLPCILGTNGVSEVIKT-TLKEDTVTEK------LQSSASSIH 295

Query: 288 GIQ 290
            +Q
Sbjct: 296 SLQ 298

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  109 bits (276), Expect = 2e-28
 Identities = 50/301 (16%), Positives = 105/301 (34%), Gaps = 40/301 (13%)

Query: 6   LVSSLSLYDIANTP--GVAADVSH----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
           +       D           D       + +   +     +     AL  +DVVI   G 
Sbjct: 25  VADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI--VINDW---AALADADVVISTLGN 79

Query: 60  PR----KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            +     P   R       + +V+S+ T +     H ++ +ISNPV+    +   +F+  
Sbjct: 80  IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHV 135

Query: 116 GTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN 174
             +   K+ G  T LD  R +       ++    V+   +G H G +    +S       
Sbjct: 136 TGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQ 194

Query: 175 NLSD------EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV- 227
            +         ++ A+ +  + GG  V+    GKG  +  +A +    A A +   +   
Sbjct: 195 PIVTLADAGDIDLAAIEEEARKGGFTVLN---GKGYTSYGVATSAIRIAKAVMADAHAEL 251

Query: 228 PDIVECTFVQSSVTELPFFASK-VRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
                   V +   ++  + S    +G++G      L  L+  E++ L   +  ++   +
Sbjct: 252 V-------VSNRRDDMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFD 303

Query: 287 K 287
           +
Sbjct: 304 E 304

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 28/182 (15%)

Query: 1   MKLDPLVSSLSLYDI-ANTPGVAADV--SHINSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
              + +  +++LYD+          +     N   + E  +  +   KAL  +D+VII  
Sbjct: 27  SIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLK---KALSAADIVIISI 83

Query: 58  GV------------PRKPGMTRDDLFNINAG----------IVKSLCTAIANYCPHALVN 95
                         P + G+ +     +  G          I   +  AI +Y P + V 
Sbjct: 84  LPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVI 143

Query: 96  MISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIG 155
             +NP++    +  +VF              T   +    T   G       ++ V V+G
Sbjct: 144 NYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLG 203

Query: 156 GH 157
            +
Sbjct: 204 IN 205

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 14/36 (38%)

Query: 2  KLDPLVSSLSLY--DIANTPGVAADVSHINSPAQVE 35
          KL    +SL LY  D A  P +A     I   A +E
Sbjct: 24 KLQ---ASLKLYADDSA--PALA-----IK--ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.97
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.96
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.95
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	83.19

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=1.3e-66  Score=473.22  Aligned_cols=286  Identities=53%  Similarity=0.827  Sum_probs=257.7

Q ss_pred             CCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546            5 PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT   83 (295)
Q Consensus         5 ~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~   83 (295)
                      ++++||+|+|+++ +.|+++||+|+..+.+++.+.++++ +++++|||+||+++|.|++|||+|+|++.+|++|++++++
T Consensus        25 ~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~-~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~  103 (312)
T 3hhp_A           25 PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQ  103 (312)
T ss_dssp             CTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCC-HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCc-HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            6789999999987 7899999999865556665433334 6999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC-CCcee
Q 022546           84 AIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH-AGVTI  162 (295)
Q Consensus        84 ~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h-g~~~~  162 (295)
                      .|+++||+++++++|||+|++|+++++++|++|.+|++||||+|.||++|+++++|+++|++|++|+++||||| |+ ++
T Consensus       104 ~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la~~lgv~~~~v~~~V~G~Hsg~-t~  182 (312)
T 3hhp_A          104 QVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV-TI  182 (312)
T ss_dssp             HHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSGG-GE
T ss_pred             HHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHHHHhCcChhHcceeEEeccCCC-ce
Confidence            99999999999999999999999977779999944999999999999999999999999999999999999999 65 89


Q ss_pred             eeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCCCC
Q 022546          163 LPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTE  242 (295)
Q Consensus       163 vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~~~  242 (295)
                      +|+||++  .+.++++++|+++.++++++|++|++.|.|+|+++||+|.|+++++++|+.+.++++.++++++++|+.+.
T Consensus       183 vp~~S~~--~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai~~~l~~~~~v~~~s~~~g~g~~  260 (312)
T 3hhp_A          183 LPLLSQV--PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQY  260 (312)
T ss_dssp             EECGGGC--TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSS
T ss_pred             eeecccC--CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCc
Confidence            9999998  44568888999999999999999999776779999999999999999995433334468888888876556


Q ss_pred             ccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          243 LPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       243 ~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      ++|||+||++|++|+++++++++|+++|+++|++|++.|+++++++++|+..
T Consensus       261 ~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          261 ARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             CSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            8999999999999999999977999999999999999999999999999863

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=4.9e-65  Score=465.72  Aligned_cols=272  Identities=24%  Similarity=0.384  Sum_probs=244.4

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC-CC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN-SP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~-~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      ++++++||+|+|+++  ++|+++||+|+. +.  +.+.   .++|+ ++++|||+||+++|.|++|||+|+|++.+|++|
T Consensus        40 ~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~---~~~d~-~~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I  115 (331)
T 4aj2_A           40 MKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV---SSKDY-SVTANSKLVIITAGARQQEGESRLNLVQRNVNI  115 (331)
T ss_dssp             HTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE---ECSSG-GGGTTEEEEEECCSCCCCTTCCGGGGHHHHHHH
T ss_pred             hCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE---EcCCH-HHhCCCCEEEEccCCCCCCCccHHHHHHHHHHH
Confidence            467889999999987  799999999985 22  2332   23564 789999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|+++||+||++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++||||
T Consensus       116 ~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~---~k~sg-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~~ViGe  191 (331)
T 4aj2_A          116 FKFIIPNVVKYSPQCKLLIVSNPVDILTYVA---WKISG-FPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGE  191 (331)
T ss_dssp             HHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBC
T ss_pred             HHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHHhC-CCHHHEEeeccccHHHHHHHHHHHHhCCCHHHCEEeEEec
Confidence            9999999999999999999999999999987   88998 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcC
Q 022546          157 HAGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLN  225 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~  225 (295)
                      ||+ ++||+||++++++.+           +++++|+++.++++++|++|++.   ||+++||+|.++++++++|++|.+
T Consensus       192 HG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kg~t~~a~a~a~a~~~~ail~d~~  267 (331)
T 4aj2_A          192 HGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---KGYTSWAIGLSVADLAESIMKNLR  267 (331)
T ss_dssp             SST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc---CCCCchhHHHHHHHHHHHHHhCCC
Confidence            999 899999999886521           34567899999999999999995   478999999999999999999965


Q ss_pred             CCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546          226 GVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF  291 (295)
Q Consensus       226 ~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~  291 (295)
                         .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++ +.++++|
T Consensus       268 ---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~~-~~~~~~~  331 (331)
T 4aj2_A          268 ---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSADTLWG-IQKELQF  331 (331)
T ss_dssp             ---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHHHHHHH-HHTTCCC
T ss_pred             ---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHHHHHHH-HHhhcCC
Confidence               578876 889998  57999999999999999999997 9999999999999999997 5555543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=7.8e-64  Score=450.53  Aligned_cols=264  Identities=28%  Similarity=0.400  Sum_probs=237.8

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNIN   74 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n   74 (295)
                      |+++++++||+|+|+++  ++|+++||+|+.    ..+++..   ++| +++++|||+||+++|.||+|||+|+|++..|
T Consensus        19 l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d-~~~~~~aDvVvitAG~prkpGmtR~dLl~~N   94 (294)
T 2x0j_A           19 CLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKN   94 (294)
T ss_dssp             HHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESC-GGGGTTCSEEEECCCCCCCSSSCHHHHHHHH
T ss_pred             HHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCC-HHHhCCCCEEEEecCCCCCCCCchHHHHHHH
Confidence            35678999999999988  899999999964    2234443   345 5899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEE
Q 022546           75 AGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPV  153 (295)
Q Consensus        75 ~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~v  153 (295)
                      ++|++++++.|+++||+++++++|||+|+||+++   +|.+| +|++|+||+ |.||++||+++|++++++++.  +++|
T Consensus        95 a~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~---~k~sg-~p~~rvig~gT~LDs~R~~~~l~~~~~~~~~--~~~V  168 (294)
T 2x0j_A           95 AGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRLKERLYNAGARNIR--RAWI  168 (294)
T ss_dssp             HHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSS-CCTTSEEECCHHHHHHHHHHHHHHTTCEEEC--CCCE
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh---HHHcC-CChhhEEEeeeEEeHHHHHHHHhhcccCCcc--eeEE
Confidence            9999999999999999999999999999999987   89999 999999999 999999999999999886653  7999


Q ss_pred             eeCCCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546          154 IGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC  233 (295)
Q Consensus       154 iG~hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~  233 (295)
                      ||+||+ +++|+||++++.+.    .+++++.++++++|+||++.   ||+++||+|.++++++++|+++++   .++|+
T Consensus       169 ~G~HGd-t~vp~~S~~~v~g~----~~~~~i~~~~~~~g~eIi~~---kGst~~a~a~a~~~~~~ail~d~~---~v~~~  237 (294)
T 2x0j_A          169 IGEHGD-SMFVAKSLADFDGE----VDWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRMVKAVVEDTG---EIIPT  237 (294)
T ss_dssp             EBCSST-TCEECGGGCCEESC----CCHHHHHHHHHTHHHHHHHH---HSSCCHHHHHHHHHHHHHHHTTCC---CEEEE
T ss_pred             EecCCC-cEEEeeeccCCCCc----hhHHHHHHHHhhhheEEEec---CcccchhHHHHHHHHHHHHHcCCC---cEEEE
Confidence            999999 99999999998663    24667888999999999994   589999999999999999999864   58888


Q ss_pred             E-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          234 T-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       234 ~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      + +++|+| .+++|||+||++|++|+ +++++ +|+++|+++|++|++.||+.+++
T Consensus       238 s~~l~g~yG~~~v~~s~P~~lg~~Gv-ei~~l-~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          238 SMILQGEYGIENVAVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             EEEEESGGGCEEEEEEEEEEEETTEE-EECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCCccEEEEEEEEEeCCEE-EEeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            7 789999 67999999999999998 58887 99999999999999999998864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.1e-64  Score=460.69  Aligned_cols=272  Identities=24%  Similarity=0.396  Sum_probs=227.8

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ++.++++||+|+|+++  ++|+++||+|+... ..++.++  ++ +++++|||+||+++|.|++|||+|++++.+|++|+
T Consensus        29 ~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~  105 (326)
T 3vku_A           29 VLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKIL  105 (326)
T ss_dssp             HHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEECCCCC----------------CH
T ss_pred             HhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHH
Confidence            3567889999999987  79999999998631 2444443  34 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|+++||+||++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++|||||
T Consensus       106 ~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~---~k~~g-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~~ViGeH  181 (326)
T 3vku_A          106 KSIVDPIVDSGFNGIFLVAANPVDILTYAT---WKLSG-FPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH  181 (326)
T ss_dssp             HHHHHHHHTTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGEECCEEBSS
T ss_pred             HHHHHHHHhcCCceEEEEccCchHHHHHHH---HHhcC-CCHHHeeeecccCcHHHHHHHHHHHhCCCHHHCeEEEEcCC
Confidence            999999999999999999999999999987   78898 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCC
Q 022546          158 AGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV  227 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~  227 (295)
                      |+ ++||+||++++++.++          ++++++++.++++++|++|++.   ||+++||+|.++++++++|++|.+  
T Consensus       182 Gd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~t~~a~a~a~~~~~~ail~~~~--  255 (326)
T 3vku_A          182 GD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKL---KGATFYGIATALARISKAILNDEN--  255 (326)
T ss_dssp             ST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHhcCCC--
Confidence            99 9999999999976432          4567899999999999999994   589999999999999999999853  


Q ss_pred             CceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          228 PDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       228 ~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                       .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       256 -~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~~~~~~~  316 (326)
T 3vku_A          256 -AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDA  316 (326)
T ss_dssp             -EEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHCC----
T ss_pred             -ceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             688886 889998 56999999999999999999998 999999999999999999888765

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=2.6e-62  Score=446.59  Aligned_cols=291  Identities=57%  Similarity=0.909  Sum_probs=264.2

Q ss_pred             CCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL   81 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i   81 (295)
                      +++++++||+|+|+++++++++||+|+..+.+++.+.+++|+.++++|||+||+++|.|+++|++|.+++.+|+++++++
T Consensus        21 ~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i  100 (314)
T 1mld_A           21 KNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATL  100 (314)
T ss_dssp             HTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHH
T ss_pred             HhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHH
Confidence            45677899999999888899999999876556776545567878999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC-CCc
Q 022546           82 CTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH-AGV  160 (295)
Q Consensus        82 ~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h-g~~  160 (295)
                      ++.|++++|++|++++|||+|++|+++++++++.+.||++||||+|.||++|+++++|+++|++|++|+++||||| |+ 
T Consensus       101 ~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~l~v~~~~v~~~v~G~H~G~-  179 (314)
T 1mld_A          101 TAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGK-  179 (314)
T ss_dssp             HHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGG-
T ss_pred             HHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHHhCcChHhEEEEEccCCCCC-
Confidence            9999999999999999999999998776644444349999999999999999999999999999999999999999 67 


Q ss_pred             eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCC
Q 022546          161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV  240 (295)
Q Consensus       161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~  240 (295)
                      +++|+||++++.. .+++++++++.+++++++++|++.|.|+|+++||+|.++++++++|++|+++++.++++++++|+|
T Consensus       180 ~~~p~~s~~~~~~-~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~~~~g~~~v~~~~~~~g~y  258 (314)
T 1mld_A          180 TIIPLISQCTPKV-DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE  258 (314)
T ss_dssp             GEEECGGGCBSCC-CCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCS
T ss_pred             cEeeecccCCCcc-cCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHcCcCCCcceEEEEEeCCcc
Confidence            8999999998543 478888999999999999999998778899999999999999999999977554688888899999


Q ss_pred             CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       241 ~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      ++++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|++.
T Consensus       259 ~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~~  312 (314)
T 1mld_A          259 TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKN  312 (314)
T ss_dssp             SSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999999998887999999999999999999999999999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=1.2e-63  Score=454.02  Aligned_cols=278  Identities=27%  Similarity=0.471  Sum_probs=244.7

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA   75 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~   75 (295)
                      ++++++++|+|+|+++  ++|+++||+|+.+    +.++..+   ++ +++++|||+||+++|.|++|||+|++++.+|+
T Consensus        20 ~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~---~~-~~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~   95 (314)
T 3nep_X           20 ARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT---ND-YGPTEDSDVCIITAGLPRSPGMSRDDLLAKNT   95 (314)
T ss_dssp             HHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE---SS-SGGGTTCSEEEECCCC-------CHHHHHHHH
T ss_pred             HhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC---CC-HHHhCCCCEEEECCCCCCCCCCCHHHHHHhhH
Confidence            3467789999999988  7899999999752    2344432   33 69999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEe
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVI  154 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~vi  154 (295)
                      ++++++++.|+++||+||++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++||
T Consensus        96 ~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~~g-~p~~rviG~~t~LD~~R~~~~la~~lgv~~~~v~~~Vi  171 (314)
T 3nep_X           96 EIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA---YEASG-FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM  171 (314)
T ss_dssp             HHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH---HHHHT-CCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH---HHhcC-CChHHEEeecCchHHHHHHHHHHHHhCcCHHHeEEEEE
Confidence            999999999999999999999999999999987   78898 999999999 5999999999999999999999999999


Q ss_pred             eCCCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCce
Q 022546          155 GGHAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI  230 (295)
Q Consensus       155 G~hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v  230 (295)
                      ||||+ +++|+||++++++.+    +++++++++.++++++|++|++.| |+ +++||+|.++++++++|++|.+   .+
T Consensus       172 G~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a~~~~~~ail~~~~---~v  245 (314)
T 3nep_X          172 GGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAAAAEMTEAILKDNK---RI  245 (314)
T ss_dssp             ESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHHHHHHHHHHHHTCC---EE
T ss_pred             CCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHHHHHHHHHHHcCCC---eE
Confidence            99999 899999999987632    466778999999999999999976 45 8999999999999999999853   58


Q ss_pred             eEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          231 VECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       231 ~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      +|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..++++.
T Consensus       246 ~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~~l~~  310 (314)
T 3nep_X          246 LPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDLQRLRDE  310 (314)
T ss_dssp             EEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8887 889998 67999999999999999999998 999999999999999999999988777653

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2.9e-63  Score=453.70  Aligned_cols=272  Identities=21%  Similarity=0.305  Sum_probs=245.6

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      ++.+++++|+|+|+++  ++|+++||+|+...  ..++.++  ++ +++++|||+||+++|.|++||++|++++.+|+++
T Consensus        25 ~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~I  101 (326)
T 3pqe_A           25 INQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADIVCICAGANQKPGETRLELVEKNLKI  101 (326)
T ss_dssp             HHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHH
T ss_pred             HhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCEEEEecccCCCCCccHHHHHHHHHHH
Confidence            3467789999999987  79999999998421  2444443  34 5899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|+++||+||++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++||||
T Consensus       102 v~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~---~k~~g-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~V~~~V~Ge  177 (326)
T 3pqe_A          102 FKGIVSEVMASGFDGIFLVATNPVDILTYAT---WKFSG-LPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE  177 (326)
T ss_dssp             HHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBS
T ss_pred             HHHHHHHHHHhcCCeEEEEcCChHHHHHHHH---HHhcC-CCHHHEEeeccccHHHHHHHHHHHHhCCCHHHceeeeeec
Confidence            9999999999999999999999999999987   78898 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          157 HAGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      ||+ ++||+||++++++.++          ++++++++.++++++|++|++.   ||+++||+|.++++++++|++|.+ 
T Consensus       178 HG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~t~~a~a~a~~~~~~ail~~~~-  252 (326)
T 3pqe_A          178 HGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGVAMSLARITKAILHNEN-  252 (326)
T ss_dssp             SST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHTTCC-
T ss_pred             CCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC---CCCcHHHHHHHHHHHHHHHhcCCC-
Confidence            999 9999999999876322          5667899999999999999994   589999999999999999999853 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                        .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       253 --~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~~~~~~~  313 (326)
T 3pqe_A          253 --SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLKNILKPH  313 (326)
T ss_dssp             --EEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             --cEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence              588876 889998 56999999999999999999998 999999999999999999988753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=3.3e-62  Score=446.36  Aligned_cols=276  Identities=33%  Similarity=0.519  Sum_probs=250.0

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      +.++. +|+|+|+++  ++|+++||+|+..    +.+++.   ++| +++++|||+||+++|.|++|||+|.+++.+|++
T Consensus        26 ~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d-~~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~  100 (321)
T 3p7m_A           26 IKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TND-YKDLENSDVVIVTAGVPRKPGMSRDDLLGINIK  100 (321)
T ss_dssp             HTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHH
T ss_pred             hCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCC-HHHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHH
Confidence            45665 999999987  6899999999852    345553   245 589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecc-hhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT-TLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t-~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|+++||+|+++++|||+|++|+++   +|.+| ||++||||+| .||++|+++++|+++|++|++|+++|||
T Consensus       101 i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~sg-~p~~rviG~~~~LD~~R~~~~la~~l~v~~~~v~~~v~G  176 (321)
T 3p7m_A          101 VMQTVGEGIKHNCPNAFVICITNPLDIMVNML---QKFSG-VPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG  176 (321)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEEECHHHHHHHHHHHHHHHHTCCGGGEECCEEE
T ss_pred             HHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHhcC-CCHHHEEeeccchHHHHHHHHHHHHhCcCHHHceEeeec
Confidence            99999999999999999999999999999987   88998 9999999995 9999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          156 GHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |||+ +++|+||++++++.+         +++++++++.++++++|++|++.+ |+|+++||+|.++++++++|++|++ 
T Consensus       177 ~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~gsa~~~~a~a~~~~~~ail~~~~-  253 (321)
T 3p7m_A          177 GHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYYAPAAAGIQMAESFLKDKK-  253 (321)
T ss_dssp             CSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHHHHHHHHHHHHHTTCC-
T ss_pred             CcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCCChHHHHHHHHHHHHHHHHcCCC-
Confidence            9998 999999999987632         366788999999999999999987 8899999999999999999999864 


Q ss_pred             CCceeEEE-Eee-CCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          227 VPDIVECT-FVQ-SSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       227 ~~~v~~~~-~~~-g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                        .++|++ +++ |+|  ++++|||+||++|++|++++ ++ +|+++|+++|++|++.|++.++...+++++
T Consensus       254 --~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~~~l~~~~~~~~~~l~~  321 (321)
T 3p7m_A          254 --MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSINAIKDLNKAAAEILAK  321 (321)
T ss_dssp             --EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             --cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence              588987 788 888  55999999999999999999 88 999999999999999999999988877753

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=1.4e-62  Score=443.40  Aligned_cols=262  Identities=28%  Similarity=0.405  Sum_probs=239.8

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC--C--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN--S--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~--~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      +++.+++|+|+|+++  ++|+++|++|+.  +  +.+++.   ++| +++++|||+||+++|.|++|||+|++++.+|++
T Consensus        21 ~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~   96 (294)
T 1oju_A           21 LNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAG   96 (294)
T ss_dssp             HHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHH
T ss_pred             hCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHH
Confidence            457788999999987  788999999875  2  234543   346 799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|+++||+|+++++|||+|++|+++   +|.+| ||++||||+ |.||++||++++| ++|++|++ +++|||
T Consensus        97 i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~---~k~~g-~p~~rviG~gt~LD~~R~~~~la-~l~v~~~~-~~~V~G  170 (294)
T 1oju_A           97 IIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRLKERLY-NAGARNIR-RAWIIG  170 (294)
T ss_dssp             HHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSC-CCTTSEEECSHHHHHHHHHHHHH-HTTCBSCC-CCCEEB
T ss_pred             HHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH---HHhcC-CCHHHEeecccccHHHHHHHHHH-HhCCCccC-ceEEEe
Confidence            99999999999999999999999999999987   88998 999999999 8999999999999 99999999 999999


Q ss_pred             CCCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-
Q 022546          156 GHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-  234 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-  234 (295)
                      |||+ +++|+||++++++.+    +++++.++++++|++|++.   ||+++||+|.++++++++|++|.+   .++|++ 
T Consensus       171 ~Hg~-t~vp~~s~~~v~g~~----~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~~~~ail~~~~---~v~~~s~  239 (294)
T 1oju_A          171 EHGD-SMFVAKSLADFDGEV----DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRMVKAVVEDTG---EIIPTSM  239 (294)
T ss_dssp             CSST-TCEECGGGCCCBSCC----CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEE
T ss_pred             cCCC-ceeeecccceECCcC----hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHcCCC---eEEEEEe
Confidence            9999 999999999997643    6789999999999999995   479999999999999999999853   588987 


Q ss_pred             EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          235 FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       235 ~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|++.|++.++.
T Consensus       240 ~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          240 ILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             EEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            889998 569999999999999999 9998 99999999999999999998875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=3.8e-62  Score=444.62  Aligned_cols=270  Identities=30%  Similarity=0.486  Sum_probs=246.5

Q ss_pred             CCCCcCeEEEEeCC--C--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIA--N--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNIN   74 (295)
Q Consensus         3 ~~~~~~ei~L~D~~--~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n   74 (295)
                      +.++ ++++|+|++  +  ++|+++||+|+.    ...+++.+   +| +++++|||+||+++|.|++|||+|++++.+|
T Consensus        29 ~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t---~d-~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N  103 (315)
T 3tl2_A           29 QKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT---SD-YADTADSDVVVITAGIARKPGMSRDDLVATN  103 (315)
T ss_dssp             HTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE---SC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHH
T ss_pred             hCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc---CC-HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHH
Confidence            4567 899999998  4  789999999874    23455542   35 5899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEE
Q 022546           75 AGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPV  153 (295)
Q Consensus        75 ~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~v  153 (295)
                      +++++++++.|+++||++|++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++|
T Consensus       104 ~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~---~k~sg-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v  179 (315)
T 3tl2_A          104 SKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV---FKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFV  179 (315)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEECCE
T ss_pred             HHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH---HHhcC-CChHHEEeeccCcHHHHHHHHHHHHhCcCHHHceeeE
Confidence            9999999999999999999999999999999987   78999 999999999 999999999999999999999999999


Q ss_pred             eeCCCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCc
Q 022546          154 IGGHAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPD  229 (295)
Q Consensus       154 iG~hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~  229 (295)
                      |||||+ ++||+||++++++.+    +++++++++.++++++|++|++.+ |||+++||+|.++++++++|++|.+   .
T Consensus       180 iG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~~a~a~a~~~~~~ail~~~~---~  254 (315)
T 3tl2_A          180 LGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAYYAPAASLVEMTEAILKDQR---R  254 (315)
T ss_dssp             EBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHHHHHHHHHHHHHTTCC---E
T ss_pred             ecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHcCCC---c
Confidence            999999 999999999997632    567788999999999999999974 7899999999999999999999853   5


Q ss_pred             eeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          230 IVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       230 v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      ++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       255 v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~  313 (315)
T 3tl2_A          255 VLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNVMKV  313 (315)
T ss_dssp             EEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            88887 889999 67999999999999999999998 99999999999999999987753

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=3.2e-62  Score=446.42  Aligned_cols=276  Identities=30%  Similarity=0.488  Sum_probs=244.6

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      ++++. +|+|+|+++  ++|+++||+|+..    +.++..   ++|+ ++++|||+||+++|.|++||++|.+++.+|++
T Consensus        28 ~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~  102 (324)
T 3gvi_A           28 LKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLK  102 (324)
T ss_dssp             HTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHH
T ss_pred             hCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHH
Confidence            45554 999999987  7899999999742    345554   2464 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecc-hhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT-TLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t-~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|+++||+|+++++|||+|++|+++   +|.+| ||++||||+| .||++|+++++|+++|++|++|+++|||
T Consensus       103 i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~---~k~sg-~p~~rviG~~~~LD~~R~~~~la~~lgv~~~~v~~~v~G  178 (324)
T 3gvi_A          103 VMEQVGAGIKKYAPEAFVICITNPLDAMVWAL---QKFSG-LPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG  178 (324)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEECCEEE
T ss_pred             HHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH---HHhcC-CCHHHEEeecCccHHHHHHHHHHHHhCcCHHHCeEEEEc
Confidence            99999999999999999999999999999987   78898 9999999995 8999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          156 GHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |||+ +++|+||++++++.+         +++++++++.++++++|++|++.| |||+++||+|.++++++++|++|++ 
T Consensus       179 ~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-gkgsa~~~~a~a~~~~~~ail~~~~-  255 (324)
T 3gvi_A          179 GHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFYAPAASAIQMAESYLKDKK-  255 (324)
T ss_dssp             CSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCCCCHHHHHHHHHHHHHHHTTCC-
T ss_pred             CCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHcCCC-
Confidence            9998 999999999987632         356788999999999999999987 8899999999999999999999864 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                        .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.... +++
T Consensus       256 --~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~-~~~  321 (324)
T 3gvi_A          256 --RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVASVAGLCEACIG-IAP  321 (324)
T ss_dssp             --EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HCG
T ss_pred             --cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHhh-hcc
Confidence              588987 789998 56899999999999999999998 99999999999999999999987654 443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.5e-61  Score=443.14  Aligned_cols=274  Identities=24%  Similarity=0.347  Sum_probs=236.5

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCCC-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINSP-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK   79 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~   79 (295)
                      ++++++||+|+|+++  ++|+++||+|+.++ .+++.   ++|++++++|||+||+++|.|+++|++|++++.+|+++++
T Consensus        30 ~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~  106 (343)
T 3fi9_A           30 MMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAA  106 (343)
T ss_dssp             HTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHH
T ss_pred             hcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHH
Confidence            467889999999987  79999999998642 24443   3467899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCeE-EEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccce-EEEeeCC
Q 022546           80 SLCTAIANYCPHAL-VNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVN-VPVIGGH  157 (295)
Q Consensus        80 ~i~~~i~~~~p~a~-viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h  157 (295)
                      ++++.|+++||+++ ++++|||+|++|+++   +|++| ||++||+|+|.||++||++++|+++|++|++|+ ++|||||
T Consensus       107 ~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~---~k~sg-~p~~rv~g~t~LDs~R~~~~la~~l~v~~~~v~~~~ViGeH  182 (343)
T 3fi9_A          107 QLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH  182 (343)
T ss_dssp             HHHHHHHHHCTTCCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEEECCHHHHHHHHHHHHHHTSCGGGEECCCEEESS
T ss_pred             HHHHHHHHhccCcEEEEEecCchHHHHHHH---HHHcC-CCcceEEEecCcHHHHHHHHHHHHhCcCHHHcccceEEEcC
Confidence            99999999999996 999999999999997   89999 999999999999999999999999999999997 8999999


Q ss_pred             CCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          158 AGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      |+ +++|+||++++++.+         +++++|+++.++++++|++|++.| | ++++||+|.++++++++|++|++   
T Consensus       183 gd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-~ss~~s~A~a~~~~~~ail~d~~---  256 (343)
T 3fi9_A          183 GE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-RSSFQSPSYVSIEMIRAAMGGEA---  256 (343)
T ss_dssp             GG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-SCCCHHHHHHHHHHHHHHTTSSC---
T ss_pred             CC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-CCcHHhHHHHHHHHHHHHHhCCC---
Confidence            99 899999999987632         367789999999999999999965 2 24567999999999999999975   


Q ss_pred             ceeEEE-EeeCCCCCccEEEEeEEEcCCceEEEccCCC-CCHHHHHHHHHHHHHHHHHHHHHhh
Q 022546          229 DIVECT-FVQSSVTELPFFASKVRLGKNGADEVLGLGP-LSDYEKQGLESLKPELKASIEKGIQ  290 (295)
Q Consensus       229 ~v~~~~-~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~-L~~~E~~~l~~s~~~l~~~~~~~~~  290 (295)
                      .++|++ +++|++.+++|||+||++|++|++.+ ++.+ |+++|+++|++|++.|++.++...+
T Consensus       257 ~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~~~~~~~~  319 (343)
T 3fi9_A          257 FRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAKLRDEVIA  319 (343)
T ss_dssp             CCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367765 88887778999999999999999876 4412 8999999999999999999887755

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.7e-60  Score=436.31  Aligned_cols=277  Identities=25%  Similarity=0.397  Sum_probs=241.2

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK   79 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~   79 (295)
                      ++++++||+|+|+++  +++.++||+|+.. ...++...  ++ +++++|||+||+++|.++++||+|++++.+|+++++
T Consensus        30 ~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~  106 (326)
T 2zqz_A           30 LQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILK  106 (326)
T ss_dssp             HHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            457789999999987  7899999999851 12333333  23 689999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCCC
Q 022546           80 SLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHA  158 (295)
Q Consensus        80 ~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg  158 (295)
                      ++++.|+++||+||++++|||+|++|+++   +|.+| +|++||||+ |.||++|+++++|+++|++|++|+++||||||
T Consensus       107 ~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~HG  182 (326)
T 2zqz_A          107 SIVDPIVDSGFNGIFLVAANPVDILTYAT---WKLSG-FPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHG  182 (326)
T ss_dssp             HHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBSSS
T ss_pred             HHHHHHHHHCCCeEEEEeCCcHHHHHHHH---HHHcC-CCHHHEEEccccchHHHHHHHHHHHhCCChhheEEEEecccC
Confidence            99999999999999999999999999987   89998 999999999 99999999999999999999999999999999


Q ss_pred             CceeeeccccCcCCCCC----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          159 GVTILPLFSQATPKSNN----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       159 ~~~~vp~~s~~~v~~~~----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      + +++|+||++++++.+          ++++.++++.++++++++++++   +||+++|++|.++++++++|++|.+   
T Consensus       183 ~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~t~~~~a~aa~~~~~ai~~~~~---  255 (326)
T 2zqz_A          183 D-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGATFYGIATALARISKAILNDEN---  255 (326)
T ss_dssp             T-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSCCCHHHHHHHHHHHHHHHTTCC---
T ss_pred             C-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCCcHHHHHHHHHHHHHHHHhCCC---
Confidence            9 999999999886531          4556778999999999999999   4588999999999999999999964   


Q ss_pred             ceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          229 DIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       229 ~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++...++++.
T Consensus       256 ~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~~~~~  322 (326)
T 2zqz_A          256 AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFAKNDI  322 (326)
T ss_dssp             EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            477876 889998 34999999999999999999997 999999999999999999999999888875

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.3e-60  Score=435.93  Aligned_cols=277  Identities=21%  Similarity=0.358  Sum_probs=240.1

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVK   79 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~   79 (295)
                      ++++++||+|+|+++  +++.++||+|+.. ...++...  ++ +++++|||+||+++|.++++|++|++++.+|+++++
T Consensus        26 ~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~  102 (318)
T 1ez4_A           26 QQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILS  102 (318)
T ss_dssp             HHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECCCC----------CHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence            457789999999987  7899999999851 12333333  23 689999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCCC
Q 022546           80 SLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHA  158 (295)
Q Consensus        80 ~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg  158 (295)
                      ++++.|+++||+||++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++||||||
T Consensus       103 ~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~HG  178 (318)
T 1ez4_A          103 SIVKPVVDSGFDGIFLVAANPVDILTYAT---WKFSG-FPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHG  178 (318)
T ss_dssp             HHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEESSSS
T ss_pred             HHHHHHHHhCCCeEEEEeCCcHHHHHHHH---HHHcC-CCHHHEEeccccchHHHHHHHHHHHhCcChhHEEEEEecccC
Confidence            99999999999999999999999999987   89998 999999999 99999999999999999999999999999999


Q ss_pred             CceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCc
Q 022546          159 GVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPD  229 (295)
Q Consensus       159 ~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~  229 (295)
                      + +++|+||++++++.+         ++++.++++.++++++++++++   +||+++|++|.++++++++|++|.+   .
T Consensus       179 ~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~~~a~a~~~~~~ai~~~~~---~  251 (318)
T 1ez4_A          179 D-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATFYGIGTALMRISKAILRDEN---A  251 (318)
T ss_dssp             S-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHHHHHTTCC---E
T ss_pred             C-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcchHHHHHHHHHHHHHHHhCCC---c
Confidence            9 999999999886531         4566789999999999999999   4588999999999999999999964   5


Q ss_pred             eeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          230 IVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       230 v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      +++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..++++.
T Consensus       252 ~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~~~~~  317 (318)
T 1ez4_A          252 VLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLAELEN  317 (318)
T ss_dssp             EEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77887 789998 34999999999999999999997 999999999999999999999999888763

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=9.9e-60  Score=434.83  Aligned_cols=279  Identities=22%  Similarity=0.233  Sum_probs=235.3

Q ss_pred             CCCCCcCe---EEEEeCCC------chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHH
Q 022546            2 KLDPLVSS---LSLYDIAN------TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDL   70 (295)
Q Consensus         2 ~~~~~~~e---i~L~D~~~------~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~   70 (295)
                      ++.++++|   |+|+|.+.      ++|++|||+|+.++  ..++++  +++ +++|+|||+||+++|.|++|||+|+|+
T Consensus        53 ~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~~~-y~~~~daDvVVitag~prkpG~tR~DL  129 (375)
T 7mdh_A           53 ASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--IDP-YEVFEDVDWALLIGAKPRGPGMERAAL  129 (375)
T ss_dssp             HHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--SCH-HHHTTTCSEEEECCCCCCCTTCCHHHH
T ss_pred             HcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--cCC-HHHhCCCCEEEEcCCCCCCCCCCHHHH
Confidence            45678887   77766533      59999999999753  244443  333 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh-CCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCcc
Q 022546           71 FNINAGIVKSLCTAIANY-CPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAE  148 (295)
Q Consensus        71 ~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~  148 (295)
                      +.+|++|++++++.|+++ +|+++++++|||+|++|+++   +|++| ++++|+||+ |.||++||+++||+++|++|++
T Consensus       130 l~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia---~k~sg-~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~  205 (375)
T 7mdh_A          130 LDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAP-DIPAKNFHALTRLDENRAKCQLALKAGVFYDK  205 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCT-TSCGGGEEECCHHHHHHHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhh
Confidence            999999999999999998 79999999999999999997   89898 566688898 9999999999999999999999


Q ss_pred             ceE-EEeeCCCCceeeeccccCcCCCCC----CCHHHH--HHHHHHhhchhhhhhhhccCCCcchhh-HHHHHHHHHHHH
Q 022546          149 VNV-PVIGGHAGVTILPLFSQATPKSNN----LSDEEI--KALTKRTQDGGTEVVEAKAGKGSATLS-MAYAGAVFADAC  220 (295)
Q Consensus       149 v~~-~viG~hg~~~~vp~~s~~~v~~~~----~~~~~~--~~i~~~v~~~~~~i~~~~~~kg~~~~s-~a~a~~~~i~ai  220 (295)
                      |+. +||||||+ ++||+||++++++.+    ..++.|  +++.++++++|++|++.|   |.++|+ .|.++++.+.+|
T Consensus       206 V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k---G~ts~a~aa~~i~~~i~~~  281 (375)
T 7mdh_A          206 VSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW---GRSSAASTAVSIADAIKSL  281 (375)
T ss_dssp             EECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT---SSCCHHHHHHHHHHHHHHH
T ss_pred             cccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHH
Confidence            985 89999998 999999999997642    233444  789999999999999964   555553 445556666666


Q ss_pred             HcCcCCCCceeEEE-EeeC-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          221 LMGLNGVPDIVECT-FVQS-SV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       221 ~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      ++|.+ ++.++|++ +++| +|  ++++|||+||++|++|++++++ + +|+++|+++|++|+++|+++.+.+.+++.
T Consensus       282 l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l-~L~~~E~~~l~~Sa~~L~~e~~~~~~~~~  357 (375)
T 7mdh_A          282 VTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWERIKKSEAELLAEKKCVAHLTG  357 (375)
T ss_dssp             HSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred             hcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66543 23588987 7899 68  5799999999999999999996 6 99999999999999999999998877764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.2e-59  Score=428.27  Aligned_cols=272  Identities=23%  Similarity=0.303  Sum_probs=244.7

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +++++++||+|+|+++  ++++++||+|+.. ...++...  ++ +++++|||+||+++|.+++||++|++++.+|++++
T Consensus        20 ~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~   96 (310)
T 2xxj_A           20 ALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVF   96 (310)
T ss_dssp             HHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHH
Confidence            3567899999999987  7899999999852 12333333  24 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|+++||+||++++|||+|++|+++   +|.+| +|++||||+ |.||++|+++++|+++|++|++|+++|||||
T Consensus        97 ~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~H  172 (310)
T 2xxj_A           97 AQVVPRVLEAAPEAVLLVATNPVDVMTQVA---YALSG-LPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEH  172 (310)
T ss_dssp             HHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGEEEEEEBCS
T ss_pred             HHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHHcC-CCHHHEEecCcchhHHHHHHHHHHHhCcCHHHeEEEEeccc
Confidence            999999999999999999999999999987   89998 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          158 AGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |+ +++|+||++++++.+           ++++.++++.++++++++++++   +||+++|++|.++++++++|++|.+ 
T Consensus       173 G~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~~~a~a~~~~~~ai~~~~~-  247 (310)
T 2xxj_A          173 GD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARLVRAILTDEK-  247 (310)
T ss_dssp             ST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSCCCHHHHHHHHHHHHHHHTTCC-
T ss_pred             CC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCCcHHHHHHHHHHHHHHHHcCCC-
Confidence            99 899999999886521           3566789999999999999999   4578999999999999999999964 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                        .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       248 --~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  308 (310)
T 2xxj_A          248 --GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEAAFAL  308 (310)
T ss_dssp             --EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence              577887 789988 46899999999999999999997 999999999999999999988764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=2e-59  Score=426.35  Aligned_cols=273  Identities=25%  Similarity=0.417  Sum_probs=247.4

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      +.++ +||+|+|+++  ++|.++|++|+.    .+.+++.   |+|+ ++++|||+||+++|.|++|||+|++++.+|++
T Consensus        20 ~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~   94 (308)
T 2d4a_B           20 MRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANAN   94 (308)
T ss_dssp             HHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHH
T ss_pred             hCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHH
Confidence            3466 8999999987  789999999963    2345554   2464 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|++++|+||+|++|||+|++|+++   +|++| +|++||||+ |.||++|+++++|+++|++|++|+++|||
T Consensus        95 i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~~~-~p~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G  170 (308)
T 2d4a_B           95 TMADLAEKIKAYAKDAIVVITTNPVDAMTYVM---YKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLG  170 (308)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEECCEEB
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CChhhEEEecccchHHHHHHHHHHHhCcChhHeEEEEEe
Confidence            99999999999999999999999999999987   78888 999999999 99999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCC-cchhhHHHHHHHHHHHHHcCcCCCCce
Q 022546          156 GHAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKG-SATLSMAYAGAVFADACLMGLNGVPDI  230 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg-~~~~s~a~a~~~~i~ai~~~~~~~~~v  230 (295)
                      |||+ +++|+||++++++.+    +++++++++.++++++++++++   +|| +++||+|.++++++++|++|++   .+
T Consensus       171 ~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~s~~~~~a~a~~~~~~ai~~~~~---~v  243 (308)
T 2d4a_B          171 MHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE---LRGYSSNYGPAAGLVLTVEAIKRDSK---RI  243 (308)
T ss_dssp             CSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHH---HHSSCCCHHHHHHHHHHHHHHHTTCC---EE
T ss_pred             ccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhh---CCCCccHHHHHHHHHHHHHHHHhCCC---cE
Confidence            9998 899999999987643    4677899999999999999999   457 8999999999999999999974   58


Q ss_pred             eEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022546          231 VECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFA  292 (295)
Q Consensus       231 ~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  292 (295)
                      ++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++...++
T Consensus       244 ~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~~l  306 (308)
T 2d4a_B          244 YPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQL  306 (308)
T ss_dssp             EEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             EEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8886 889998 57999999999999999999997 9999999999999999999998776554

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=2.4e-59  Score=429.20  Aligned_cols=282  Identities=24%  Similarity=0.347  Sum_probs=243.3

Q ss_pred             CCCCCcCe-----EEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHH
Q 022546            2 KLDPLVSS-----LSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFN   72 (295)
Q Consensus         2 ~~~~~~~e-----i~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~   72 (295)
                      +..++++|     |+|+|+++    ++|+++||+|+.++. +.....+++.+++++|||+||+++|.|++|||+|++++.
T Consensus        24 ~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~  102 (333)
T 5mdh_A           24 GNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLK  102 (333)
T ss_dssp             HTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHH
T ss_pred             HhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHH
Confidence            45677888     99999974    689999999986432 222223345579999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCe-EEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccce
Q 022546           73 INAGIVKSLCTAIANYCPHA-LVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVN  150 (295)
Q Consensus        73 ~n~~i~~~i~~~i~~~~p~a-~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~  150 (295)
                      +|+++++++++.+++++|++ |++++|||+|++|+++   +|++|.+|+ |+||. |.||++||++++|+++|++|++|+
T Consensus       103 ~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~---~~~~~~~p~-~~ig~~t~LDs~R~~~~la~~l~v~~~~v~  178 (333)
T 5mdh_A          103 ANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPSIPK-ENFSCLTRLDHNRAKAQIALKLGVTSDDVK  178 (333)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCG-GGEEECCHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH---HHHcCCCCc-CEEEEEEhHHHHHHHHHHHHHhCcCHHHee
Confidence            99999999999999999998 7999999999999987   788874555 55776 999999999999999999999999


Q ss_pred             EE-EeeCCCCceeeeccccCcC--CCCCCC------HHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHH
Q 022546          151 VP-VIGGHAGVTILPLFSQATP--KSNNLS------DEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADA  219 (295)
Q Consensus       151 ~~-viG~hg~~~~vp~~s~~~v--~~~~~~------~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~a  219 (295)
                      ++ ||||||+ +++|+||++++  ++.+++      ++.  .+++.++++++|++|++.|  ++++.|++|.++++++++
T Consensus       179 ~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k--~~ssa~~~a~~~~~~~~~  255 (333)
T 5mdh_A          179 NVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR--KLSSAMSAAKAICDHVRD  255 (333)
T ss_dssp             CCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHH
T ss_pred             ecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHH
Confidence            87 5999999 89999999975  443232      223  3689999999999999964  357899999999999999


Q ss_pred             HHcCcCCCCceeEEE-EeeC-CC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 022546          220 CLMGLNGVPDIVECT-FVQS-SV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFANR  294 (295)
Q Consensus       220 i~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~~  294 (295)
                      |++|++. +.++|++ +++| +|  ++++|||+||++ ++|++++++ + +|+++|+++|++|++.|+++++++++|+..
T Consensus       256 il~~~~~-~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l-~L~~~E~~~l~~sa~~L~~~~~~~~~~l~~  332 (333)
T 5mdh_A          256 IWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSS  332 (333)
T ss_dssp             HHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCC-CeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999753 2588987 6799 88  479999999999 999999998 7 999999999999999999999999999863

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.4e-57  Score=417.46  Aligned_cols=285  Identities=64%  Similarity=1.022  Sum_probs=256.7

Q ss_pred             CCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC   82 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~   82 (295)
                      .++++.||+|+|+++..+.++||.|...+.++....+++|++++++|||+||+++|.++++|++|.+++.+|++++++++
T Consensus        30 ~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~  109 (326)
T 1smk_A           30 MNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLC  109 (326)
T ss_dssp             HCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            45778999999998778899999997654466654455688899999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCeEEEEecCCccchHHHHHHH-HHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceEEEeeCC-CCc
Q 022546           83 TAIANYCPHALVNMISNPVNSTVPIAAEV-FKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH-AGV  160 (295)
Q Consensus        83 ~~i~~~~p~a~viv~tNP~d~~t~~~~~~-~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h-g~~  160 (295)
                      +.+++++|++|++++|||+|++|++++++ +|.+| ||++||||+|.||++|+++++|+++|++|++|+++||||| |+ 
T Consensus       110 ~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~-~p~~rviG~~~Ld~~r~~~~la~~l~v~~~~v~~~v~G~H~G~-  187 (326)
T 1smk_A          110 EGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT-YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV-  187 (326)
T ss_dssp             HHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTC-CCTTSEEECCHHHHHHHHHHHHHHHTCCGGGCBCCEEECSSGG-
T ss_pred             HHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccC-CCcccEEEEeehHHHHHHHHHHHHhCcChhheEEEEecccCCc-
Confidence            99999999999999999999977766554 45667 9999999999999999999999999999999999999999 76 


Q ss_pred             eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHH---HcCcCCCCceeEEEEee
Q 022546          161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADAC---LMGLNGVPDIVECTFVQ  237 (295)
Q Consensus       161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai---~~~~~~~~~v~~~~~~~  237 (295)
                      +++|+||++++.. .+++++++++.++++++++++++.|.|+|+++||+|.++++++++|   ++|++   .++++++++
T Consensus       188 ~~~p~~s~~~v~~-~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~ai~~~~~~~~---~v~~~~~~~  263 (326)
T 1smk_A          188 TILPLLSQVKPPS-SFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDA---GVIECAFVS  263 (326)
T ss_dssp             GEEECGGGCBSCC-CCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHHTCS---CEEEEEEEE
T ss_pred             eEEEecccCeecC-cCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHhCCCC---eEEEEEeec
Confidence            8999999998864 3788889999999999999999976677999999999999999999   88764   588888889


Q ss_pred             CCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 022546          238 SSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       238 g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~~  293 (295)
                      |+|+++++||+||++|++|++++++.++|+++|+++|++|++.|++.++++.+|+-
T Consensus       264 g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~~  319 (326)
T 1smk_A          264 SQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR  319 (326)
T ss_dssp             CCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888999999999999999999993399999999999999999999999998863

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=2.5e-58  Score=422.99  Aligned_cols=271  Identities=25%  Similarity=0.310  Sum_probs=224.0

Q ss_pred             CeEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546            8 SSLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT   83 (295)
Q Consensus         8 ~ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~   83 (295)
                      .||+|+|+++    ++|.++||+|++++.......+ +|.+++|+|||+||+++|.||+|||+|+|++.+|++|++++++
T Consensus        56 ~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~  134 (345)
T 4h7p_A           56 VELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-ADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGE  134 (345)
T ss_dssp             EEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-CChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHH
Confidence            4999999986    4799999999987655554443 4568999999999999999999999999999999999999999


Q ss_pred             HHHhhC-CCeEEEEecCCccchHHHHHHHHHH-hCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccce-EEEeeCCCC
Q 022546           84 AIANYC-PHALVNMISNPVNSTVPIAAEVFKK-AGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVN-VPVIGGHAG  159 (295)
Q Consensus        84 ~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~-sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~  159 (295)
                      .|.+++ |+++++++|||+|++++++   +++ +| +|++|+||. |.||++||+++||+++|++|++|+ .+|||+||+
T Consensus       135 ~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g-~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~  210 (345)
T 4h7p_A          135 AIAAVAASDCRVVVVGNPANTNALIL---LKSAQG-KLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS  210 (345)
T ss_dssp             HHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTT-CSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred             HHHhhccCceEEEEeCCCcchHHHHH---HHHccC-CCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence            999997 8899999999999999987   565 46 666666666 999999999999999999999997 578999999


Q ss_pred             ceeeeccccCcCCCCC----CCHHHH-HHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE
Q 022546          160 VTILPLFSQATPKSNN----LSDEEI-KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT  234 (295)
Q Consensus       160 ~~~vp~~s~~~v~~~~----~~~~~~-~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~  234 (295)
                       +++|+||++++++.+    ++++.+ +++.++++++|++|++.|  +++++||+|.++++++++|++|.+...+ +++.
T Consensus       211 -t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k--g~ss~~s~a~a~~~~~~~~l~~~~~~~~-vs~~  286 (345)
T 4h7p_A          211 -TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR--GLSSAMSAAKAAVDHVHDWIHGTPEGVY-VSMG  286 (345)
T ss_dssp             -TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTCC-EEEE
T ss_pred             -eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC--CCcchhhHHHHHHHHHHHHhcCCCCceE-EEEE
Confidence             999999999997642    222333 579999999999999976  3578999999999999999999875432 2323


Q ss_pred             -Ee-eCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          235 -FV-QSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       235 -~~-~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                       ++ +|+|  ++++|||+||++| +|.+++++..+|+++|+++|++|+++|+++.+.+
T Consensus       287 v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~s~~~L~~E~~~A  343 (345)
T 4h7p_A          287 VYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLASTIAELQEERAQA  343 (345)
T ss_dssp             EECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHHHHHHHHHHHHHT
T ss_pred             EEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence             44 5888  6899999999997 6788888755899999999999999999987654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.2e-60  Score=435.21  Aligned_cols=259  Identities=21%  Similarity=0.285  Sum_probs=233.6

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC---CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS---PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~---~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      ++.++++||+|+|+++  ++|+++||+|+..   ..++..   ++|+ ++++|||+||+++|.|++|||+|++++.+|++
T Consensus        41 a~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---t~d~-~~~~daDiVIitaG~p~kpG~tR~dll~~N~~  116 (330)
T 3ldh_A           41 LMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS---GKDY-SVSAGSKLVVITAGARQQEGESRLNLVQRNVN  116 (330)
T ss_dssp             HHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE---ESSS-CSCSSCSEEEECCSCCCCSSCCTTGGGHHHHH
T ss_pred             HhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE---cCCH-HHhCCCCEEEEeCCCCCCCCCCHHHHHHhhHH
Confidence            3467889999999987  7999999999742   234443   3465 67999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|++++|+||++++|||+|++|+++   +|.+| ||++||||+ |.||++||++++|+++|++|++|+++|||
T Consensus       117 I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~---~k~sg-~p~~rViG~gt~LDs~R~~~~lA~~lgv~~~~V~~~V~G  192 (330)
T 3ldh_A          117 IFKFIIPNIVKHSPDCLKELHPELGTDKNKQD---WKLSG-LPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIG  192 (330)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEECCTTHHHHHHHHHHHHHHHTSCTTTCCEEECS
T ss_pred             HHHHHHHHHHhhCCCceEEeCCCccHHHHHHH---HHHhC-CCHHHeecccCchhHHHHHHHHHHHhCCCHHHeEEEEEc
Confidence            99999999999999999999999999999987   89998 999999999 89999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHH-----------------HHHHHHH
Q 022546          156 GHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAY-----------------AGAVFAD  218 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~-----------------a~~~~i~  218 (295)
                      |||+ +++|+||+ .     +    .+++.++++++|++|++   +||+++||+|.                 +++++++
T Consensus       193 ~Hg~-t~vp~~S~-~-----~----~~~~~~~v~~~g~eii~---~kg~t~~a~a~~~~~~~~~~~~~~~~~~a~~~~~~  258 (330)
T 3ldh_A          193 QHGD-SVPSVWSG-M-----W----DAKLHKDVVDSAYEVIK---LKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQ  258 (330)
T ss_dssp             SSST-TCCEEEEE-E-----E----ETTEEHHHHHCCCTTST---TCHHHHHHHHHTTHHHHTTSSSCSCTHHHHHHHHH
T ss_pred             CCCC-ceeeechh-h-----H----HHHHHHHHHHHHHHHHH---ccCCcceeeeeeccCccchhhhhhhHHHHHHHHHH
Confidence            9999 99999998 1     1    15778889999999999   46899999999                 9999999


Q ss_pred             HHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEE--EccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          219 ACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADE--VLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       219 ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~--v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      +|+.|.+   .++|++ +++|+|  ++++|||+||++| +|+++  ++++ +|+++|+++|++|++.|++.++.
T Consensus       259 ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~~~l~~s~~~l~~~~~~  327 (330)
T 3ldh_A          259 TIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEEQQLQKSATTLWDIQKD  327 (330)
T ss_dssp             HHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999864   588887 789998  4599999999999 99999  9997 99999999999999999987764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=4.7e-58  Score=419.19  Aligned_cols=273  Identities=26%  Similarity=0.368  Sum_probs=235.9

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +++++++||+|+|+++  ++|+++||+|+.. ...++...  ++ +++++|||+||++++.|+++|++|++++.+|++++
T Consensus        27 ~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~  103 (318)
T 1y6j_A           27 ALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIA  103 (318)
T ss_dssp             HHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCCC------CHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHH
Confidence            3567889999999987  7899999999852 12444433  34 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|++|++++|||+|++|+++   +|++| +|++||||+ |.||++|+++++|+++|++|++|+++|||||
T Consensus       104 ~~i~~~i~~~~p~a~viv~tNPv~~~~~~~---~k~s~-~p~~rviG~gt~Ld~~r~~~~la~~lgv~~~~v~~~v~G~H  179 (318)
T 1y6j_A          104 KEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWSG-LPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH  179 (318)
T ss_dssp             HHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECTTHHHHHHHHHHHHTTTTCCTTTEECCEEBCS
T ss_pred             HHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHcC-CCHHHEeccCCchHHHHHHHHHHHHhCCCHHHeEEEEeccc
Confidence            999999999999999999999999999987   79998 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCCC-----------CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          158 AGVTILPLFSQATPKSNNL-----------SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~~-----------~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |+ +++|+||++++++.++           +++.++++.++++++++++++   +||+++|++|.++++++++|++|++ 
T Consensus       180 G~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~~~a~a~~~~~~ai~~~~~-  254 (318)
T 1y6j_A          180 GD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGATYYGIAVSINTIVETLLKNQN-  254 (318)
T ss_dssp             SS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred             CC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCccHHHHHHHHHHHHHHHHcCCC-
Confidence            99 9999999998865322           233367999999999999999   5688999999999999999999964 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                        .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..
T Consensus       255 --~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~  316 (318)
T 1y6j_A          255 --TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNEVK  316 (318)
T ss_dssp             --CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             --cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence              477776 789988 57899999999999999999997 9999999999999999999988653

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=2.9e-58  Score=420.52  Aligned_cols=272  Identities=23%  Similarity=0.366  Sum_probs=242.1

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      ++++++||+|+|+++  +++.++||+|+..  ...++...  ++ +++++|||+||+++|.|+++|++|++++.+|++++
T Consensus        27 ~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~  103 (317)
T 3d0o_A           27 NQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIF  103 (317)
T ss_dssp             HHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence            456789999999987  7889999998631  12334433  23 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|++|++++|||+|++|+++   +|.+| +|++||||+ |.||++|+++++|+++|++|++|+++|||||
T Consensus       104 ~~i~~~i~~~~p~a~viv~tNPv~~~t~~~---~k~~~-~p~~rviG~gt~lD~~r~~~~la~~l~v~~~~v~~~v~G~H  179 (317)
T 3d0o_A          104 KSIVGEVMASKFDGIFLVATNPVDILAYAT---WKFSG-LPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH  179 (317)
T ss_dssp             HHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBCS
T ss_pred             HHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHhC-CCHHHEEecCccccHHHHHHHHHHHhCcChhhEEEEEEecC
Confidence            999999999999999999999999999987   89998 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          158 AGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      |+ +++|+||++++++.+         ++++.++++.++++++++++++   +||+++|++|.++++++++|++|.+   
T Consensus       180 G~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~~~~~~ai~~~~~---  252 (317)
T 3d0o_A          180 GD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGATYYGVAMGLARITEAIFRNED---  252 (317)
T ss_dssp             ST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSCCCHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCCchHhHHHHHHHHHHHHHcCCC---
Confidence            99 999999999886532         3445678999999999999999   4588999999999999999999964   


Q ss_pred             ceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          229 DIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       229 ~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++...
T Consensus       253 ~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  314 (317)
T 3d0o_A          253 AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAEAE  314 (317)
T ss_dssp             EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            577887 789998 34999999999999999999997 9999999999999999999988654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=4.9e-57  Score=410.05  Aligned_cols=271  Identities=26%  Similarity=0.389  Sum_probs=243.5

Q ss_pred             CCCCcCeEEEEeC--CC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDI--AN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         3 ~~~~~~ei~L~D~--~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      +++..+||+|+|+  ++  +++.++||.|+.. ...++...+  + +++++|||+||++++.++++|++|.+++.+|+++
T Consensus        22 ~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~--~-~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i   98 (303)
T 1o6z_A           22 LRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG--G-YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPI   98 (303)
T ss_dssp             HTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC--C-GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeC--C-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHH
Confidence            4577899999999  65  5788999998632 223333332  4 6899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.+++++|++|++++|||+|++|+++   +|.+| +|++||||+ |.||++|+++++|+++|++|++|+++||||
T Consensus        99 ~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~---~~~~~-~p~~rviG~gt~Ld~~r~~~~la~~l~v~~~~v~~~v~G~  174 (303)
T 1o6z_A           99 MEDIQSSLDEHNDDYISLTTSNPVDLLNRHL---YEAGD-RSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGE  174 (303)
T ss_dssp             HHHHHHHHHTTCSCCEEEECCSSHHHHHHHH---HHHSS-SCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEECCEEEC
T ss_pred             HHHHHHHHHHHCCCcEEEEeCChHHHHHHHH---HHHcC-CCHHHeeecccchhHHHHHHHHHHHhCcCHHHeEEEEEeC
Confidence            9999999999999999999999999999987   89998 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCC-CC-CHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE
Q 022546          157 HAGVTILPLFSQATPKSN-NL-SDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT  234 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~-~~-~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~  234 (295)
                      ||+ +++|+||++++++. .+ ++++++++.++++++++++++   +||+++||+|.++++++++|++|++   .+++++
T Consensus       175 HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~~~~~~ai~~~~~---~~~~~~  247 (303)
T 1o6z_A          175 HGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGVAHMVEAILHDTG---EVLPAS  247 (303)
T ss_dssp             SST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHHHHHHHHHHTTCC---CEEEEE
T ss_pred             CCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHHHHHHHHHHhCCC---CEEEEE
Confidence            999 89999999987542 23 778899999999999999998   6689999999999999999999974   477876


Q ss_pred             -EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          235 -FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       235 -~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                       +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       248 ~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  302 (303)
T 1o6z_A          248 VKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDKI  302 (303)
T ss_dssp             EEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence             789998 57899999999999999999997 999999999999999999988753

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1e-56  Score=408.94  Aligned_cols=272  Identities=27%  Similarity=0.469  Sum_probs=237.3

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      +.+.++ ++|+|+++  +++.++||.|+.    ...+++.   ++|+ ++++|||+||+++|.|+++|++|.+++.+|++
T Consensus        23 ~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~   97 (309)
T 1ur5_A           23 AKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNAD   97 (309)
T ss_dssp             HTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEECCCC--------CHHHHHHHH
T ss_pred             HCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHH
Confidence            455555 99999987  788899999973    2334553   3465 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|++++|++|++++|||+|++|+++   +|.+| +|++||||+ |.||++|+++++|+++|++|++|+++|||
T Consensus        98 i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~---~~~~~-~~~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~~v~G  173 (309)
T 1ur5_A           98 ITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG  173 (309)
T ss_dssp             HHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHHHHHHHHHTCCGGGEEECCEE
T ss_pred             HHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH---HHHcC-CCHHHEEECCcchHHHHHHHHHHHHhCCChhheeEEEec
Confidence            99999999999999999999999999999987   78888 999999999 99999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCC----CCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCcee
Q 022546          156 GHAGVTILPLFSQATPKSN----NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV  231 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~----~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~  231 (295)
                      |||+ +++|+||++++++.    .+++++++++.++++++++++++. .+||+++||+|.++++++++|++|++   .++
T Consensus       174 ~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a~a~~~~~~ai~~~~~---~~~  248 (309)
T 1ur5_A          174 GHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPAAATAQMVEAVLKDKK---RVM  248 (309)
T ss_dssp             CSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHHHHHHHHHHHHHTTCC---EEE
T ss_pred             CcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHHHHHHHHHHHHHcCCC---cEE
Confidence            9998 99999999988653    257788999999999999999985 35689999999999999999999874   588


Q ss_pred             EEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          232 ECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       232 ~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      +++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..
T Consensus       249 ~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  307 (309)
T 1ur5_A          249 PVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTLK  307 (309)
T ss_dssp             EEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            886 889998 57999999999999999999997 9999999999999999999988653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=6e-57  Score=411.73  Aligned_cols=271  Identities=24%  Similarity=0.348  Sum_probs=242.7

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +.++++||+|+|+++  +++.++|+.|...  ...++.+.  ++ +++++|||+||++++.++++|++|.+++.+|++++
T Consensus        27 ~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~  103 (316)
T 1ldn_A           27 NQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIF  103 (316)
T ss_dssp             HHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHH
T ss_pred             hCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHH
Confidence            457789999999987  6788999998642  11344433  23 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.+++++|++|++++|||+|++|+++   +|++| +|++||||+ |.||++|+++++|+++|++|++|+++|||||
T Consensus       104 ~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~---~~~s~-~p~~rviG~gt~lD~~r~~~~la~~l~v~~~~v~~~v~G~H  179 (316)
T 1ldn_A          104 RSIVESVMASGFQGLFLVATNPVDILTYAT---WKFSG-LPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH  179 (316)
T ss_dssp             HHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECTTHHHHHHHHHHHHHHHTSCGGGEEEEEEBCS
T ss_pred             HHHHHHHHHHCCCCEEEEeCCchHHHHHHH---HHHhC-CCHHHEEecccchHHHHHHHHHHHHhCCCHHHeEEEEeccc
Confidence            999999999999999999999999999987   78998 999999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCC
Q 022546          158 AGVTILPLFSQATPKSNN----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV  227 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~  227 (295)
                      |+ +++|+||++++++.+          +++++++++.++++++++++++   +||+++|++|.++++++++|++|++  
T Consensus       180 G~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~~~~~~ai~~~~~--  253 (316)
T 1ldn_A          180 GD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKGATYYGIAMGLARVTRAILHNEN--  253 (316)
T ss_dssp             ST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccCCcHHHHHHHHHHHHHHHHhCCC--
Confidence            99 899999999876421          3345678999999999999999   4588999999999999999999864  


Q ss_pred             CceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          228 PDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       228 ~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                       .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       254 -~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  314 (316)
T 1ldn_A          254 -AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA  314 (316)
T ss_dssp             -EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             577876 889998 57999999999999999999997 999999999999999999998865

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=8.8e-56  Score=401.05  Aligned_cols=261  Identities=20%  Similarity=0.276  Sum_probs=226.9

Q ss_pred             CCCCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL   81 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i   81 (295)
                      ..++++||+|+|+++ +.|.++|+.|+.. ++++.+   +|+ ++++|||+||+++|.+ +|||+|++++.+|+++++++
T Consensus        35 ~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~~i~~t---~d~-~~l~~aD~Vi~aag~~-~pG~tR~dl~~~n~~i~~~i  108 (303)
T 2i6t_A           35 AKGIADRLVLLDLSEGTKGATMDLEIFNL-PNVEIS---KDL-SASAHSKVVIFTVNSL-GSSQSYLDVVQSNVDMFRAL  108 (303)
T ss_dssp             HHTCCSEEEEECCC-----CHHHHHHHTC-TTEEEE---SCG-GGGTTCSEEEECCCC-----CCHHHHHHHHHHHHHHH
T ss_pred             hcCCCCEEEEEcCCcchHHHHHHHhhhcC-CCeEEe---CCH-HHHCCCCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHH
Confidence            346789999999987 8899999998654 366653   465 8999999999999996 89999999999999999999


Q ss_pred             HHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCc
Q 022546           82 CTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGV  160 (295)
Q Consensus        82 ~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~  160 (295)
                      ++.|+++||++|++++|||+|++|+++   +|.+| ||++||||+ |.||++|+++++|+++|++|++|+++|||+||+ 
T Consensus       109 ~~~i~~~~p~a~iiv~sNP~~~~t~~~---~~~~~-~p~~rviG~gt~Ld~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-  183 (303)
T 2i6t_A          109 VPALGHYSQHSVLLVASQPVEIMTYVT---WKLST-FPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGE-  183 (303)
T ss_dssp             HHHHHHHTTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHTSCCTTGGGGEEEEBSCSS-
T ss_pred             HHHHHHhCCCeEEEEcCChHHHHHHHH---HHhcC-CCHHHeeCCCCCchHHHHHHHHHHHcCCChHHeEEEEecCCCC-
Confidence            999999999999999999999999987   78888 999999999 999999999999999999999999999999998 


Q ss_pred             eeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCC
Q 022546          161 TILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSS  239 (295)
Q Consensus       161 ~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~  239 (295)
                      +++|+||+..   ..+.    +++.++++++++++++   +||+++||+|.++++++++|++|++   .+++++ +++|+
T Consensus       184 s~~p~~s~~~---~~~~----~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~ai~~~~~---~~~~vs~~~~g~  250 (303)
T 2i6t_A          184 DKVLTWSGQE---EVVS----HTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVDSIVNNKK---KVHSVSALAKGY  250 (303)
T ss_dssp             SCEEEEBCSS---CCCC----HHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTS
T ss_pred             Cccccccccc---cccH----HHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHHHHHcCCC---cEEEEEEEeCCc
Confidence            8999999852   1222    4577778889999988   6789999999999999999999975   577776 78999


Q ss_pred             C--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          240 V--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       240 ~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      |  ++++|||+||++|++|+++++++++|+++|+++|++|++.|++.++.
T Consensus       251 yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~  300 (303)
T 2i6t_A          251 YDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQ  300 (303)
T ss_dssp             TTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8  57999999999999999999987689999999999999999998875

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=5.6e-56  Score=404.89  Aligned_cols=275  Identities=24%  Similarity=0.378  Sum_probs=238.7

Q ss_pred             CCCCCcCeEEEEeC--CC--chhHHHhhhCCCC-C-CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDI--AN--TPGVAADVSHINS-P-AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA   75 (295)
Q Consensus         2 ~~~~~~~ei~L~D~--~~--~~~~~~Dl~~~~~-~-~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~   75 (295)
                      +.++.++||+|+|+  ++  +.+.++||+|+.. . ..++...++++++++++|||+||+++|.++++|++|.+++.+|+
T Consensus        21 ~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~  100 (313)
T 1hye_A           21 AKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNA  100 (313)
T ss_dssp             HTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHH
T ss_pred             HhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHH
Confidence            35678899999999  65  6788999998641 1 23333322223679999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEe
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVI  154 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~vi  154 (295)
                      ++++++++.+++++ ++|++++|||+|++|+++   +|.+| +|++||||+ |.||++|+++++|+++|++|++|+++||
T Consensus       101 ~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~---~k~~~-~p~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~~v~  175 (313)
T 1hye_A          101 KIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA---LVDSK-FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRII  175 (313)
T ss_dssp             HHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH---HHHHC-CCTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEE
T ss_pred             HHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH---HHhhC-cChhcEEEeCccHHHHHHHHHHHHHhCcCHHHeEEEEe
Confidence            99999999999999 999999999999999987   78888 999999999 9999999999999999999999999999


Q ss_pred             eCCCCceeeeccccCcCCCCC------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          155 GGHAGVTILPLFSQATPKSNN------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       155 G~hg~~~~vp~~s~~~v~~~~------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      ||||+ +++|+||++++++.+      +++++++++.++++++++++++   +||+++||+|.++++++++|++|++   
T Consensus       176 G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~~a~a~~~~~~ai~~~~~---  248 (313)
T 1hye_A          176 GEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFGPAAAILNVVRCIVNNEK---  248 (313)
T ss_dssp             ECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CCHHHHHHHHHHHHHTTCC---
T ss_pred             eccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHHHHHHHHHHHHHHHcCCC---
Confidence            99998 999999999886532      2555689999999999999998   5689999999999999999999964   


Q ss_pred             ceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          229 DIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       229 ~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      .+++++ +++|+|  .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..
T Consensus       249 ~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  311 (313)
T 1hye_A          249 RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEEVK  311 (313)
T ss_dssp             EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            577776 789988  35999999999999999999997 9999999999999999999988754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.7e-54  Score=396.24  Aligned_cols=270  Identities=30%  Similarity=0.462  Sum_probs=242.0

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC-----HHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT-----RDDLF   71 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~-----r~~~~   71 (295)
                      ..++++ |+|+|+++  +++.++|+++..    ...+++.   ++|+ ++++|||+||+++|.|+++|++     |.+++
T Consensus        25 ~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~   99 (322)
T 1t2d_A           25 QKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLL   99 (322)
T ss_dssp             HTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGH
T ss_pred             hCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHH
Confidence            345655 99999987  788899999862    2345554   3566 8999999999999999999999     99999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccce
Q 022546           72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVN  150 (295)
Q Consensus        72 ~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~  150 (295)
                      .+|+++++++++.|.+++|++|+|++|||+|++|+++   ++.+| ||++||||+ |.||++|+++++|+++|++|++|+
T Consensus       100 ~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~---~~~~g-~~~~rviG~gt~ld~~R~~~~la~~lgv~~~~v~  175 (322)
T 1t2d_A          100 PLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHSG-VPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN  175 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH---HHhcC-CChHHEEeccCcccHHHHHHHHHHHhCCCHHHeE
Confidence            9999999999999999999999999999999999886   78888 999999999 799999999999999999999999


Q ss_pred             EEEeeCCCCceeeeccccCcCCCC---------CCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHH
Q 022546          151 VPVIGGHAGVTILPLFSQATPKSN---------NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL  221 (295)
Q Consensus       151 ~~viG~hg~~~~vp~~s~~~v~~~---------~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~  221 (295)
                      ++||||||+ +++|+||++++++.         .+++++++++.++++++++++++.   ||+++||+|.++++++++|+
T Consensus       176 ~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kgs~~~~~a~a~~~~~~ai~  251 (322)
T 1t2d_A          176 AHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL---HASPYVAPAAAIIEMAESYL  251 (322)
T ss_dssp             CCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH---TSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHHH
Confidence            999999998 89999999988642         246677899999999999999995   57899999999999999999


Q ss_pred             cCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          222 MGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       222 ~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      +|++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++.+-
T Consensus       252 ~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~L~~~~~~~~  317 (322)
T 1t2d_A          252 KDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKALAH  317 (322)
T ss_dssp             TTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9874   588876 889998 57999999999999999999997 9999999999999999999988764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=6e-54  Score=393.62  Aligned_cols=272  Identities=33%  Similarity=0.506  Sum_probs=243.0

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      ..+.+ +++|+|+++  +++.++|+.|..    .+.+++.   |+|+ ++++|||+||+++|.|+++|++|.+++.+|++
T Consensus        35 ~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~  109 (328)
T 2hjr_A           35 QKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAK  109 (328)
T ss_dssp             HTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHH
T ss_pred             hCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHH
Confidence            34554 499999988  678788998863    2335554   3566 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIG  155 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG  155 (295)
                      +++++++.|.+++|++|++++|||+|++|+++   ++.+| ||++||||+ |.||++|+++++|+++|++|++|+++|||
T Consensus       110 i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~---~~~~~-~~~~rviG~~t~Ld~~R~~~~la~~lgv~~~~v~~~v~G  185 (328)
T 2hjr_A          110 IVGSVAENVGKYCPNAFVICITNPLDAMVYYF---KEKSG-IPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG  185 (328)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEESCHHHHHHHHHHHHHHHHTSCGGGEECCEEB
T ss_pred             HHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHhcC-CChhhEEEeCcHHHHHHHHHHHHHHhCCCHHHeeEEEec
Confidence            99999999999999999999999999999887   78888 999999999 59999999999999999999999999999


Q ss_pred             CCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          156 GHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       156 ~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      +||+ +++|+||++++++.+         +++++++++.++++++|+++++.+ ++|+++||+|.++++++++|++|++ 
T Consensus       186 ~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs~~~~~a~a~~~i~~ai~~~~~-  262 (328)
T 2hjr_A          186 GHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFYAPAASAVAMAQAYLKDSK-  262 (328)
T ss_dssp             CSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCCCCHHHHHHHHHHHHHHHTTCC-
T ss_pred             CCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCchHHHHHHHHHHHHHHHHcCCC-
Confidence            9998 999999999886521         466678899999999999999964 6789999999999999999999865 


Q ss_pred             CCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          227 VPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                        .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|+..|++.++++.
T Consensus       263 --~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~  324 (328)
T 2hjr_A          263 --SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQDLK  324 (328)
T ss_dssp             --EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              588886 789998 57999999999999999999997 9999999999999999999998775

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=4.5e-53  Score=385.25  Aligned_cols=273  Identities=28%  Similarity=0.482  Sum_probs=243.5

Q ss_pred             CCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            4 DPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      ++...+++|+|+++  +++..+|+.|..    ...+++.   ++|+ +++++||+||++.+.|+++|++|.+++.+|+++
T Consensus        22 ~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvViiav~~p~~~g~~r~dl~~~n~~i   97 (310)
T 1guz_A           22 KQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGI   97 (310)
T ss_dssp             TTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence            34578999999987  678888998862    2334553   2465 559999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|++++|+++++++|||+|++++++   +|.+| +|++||||+ |.||++|+++++|+++|+++++|+++|||+
T Consensus        98 ~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~---~~~~~-~~~~rviG~gt~ld~~r~~~~la~~l~v~~~~v~~~v~G~  173 (310)
T 1guz_A           98 VKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG  173 (310)
T ss_dssp             HHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEECHHHHHHHHHHHHHHHHTCCGGGEECCEEEC
T ss_pred             HHHHHHHHHHhCCCcEEEEEcCchHHHHHHH---HHhcC-CChHHEEECCCchHHHHHHHHHHHHhCCCHHHeEEEEEcc
Confidence            9999999999999999999999999999886   78888 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeE
Q 022546          157 HAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVE  232 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~  232 (295)
                      ||+ +++|+||++++++.+    +++++++++.++++++++++++. .+||+++||+|.++++++++|++|++   .+++
T Consensus       174 Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a~a~~~~~~ai~~~~~---~~~~  248 (310)
T 1guz_A          174 HGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRK---RVLP  248 (310)
T ss_dssp             SGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHHHHHHHHHHHHHTTCC---EEEE
T ss_pred             cCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHHHHHHHHHHHHHcCCC---cEEE
Confidence            997 999999999987643    46778899999999999999985 35689999999999999999999974   5888


Q ss_pred             EE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 022546          233 CT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQ  290 (295)
Q Consensus       233 ~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~  290 (295)
                      ++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++...
T Consensus       249 ~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~~  307 (310)
T 1guz_A          249 CAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKMLES  307 (310)
T ss_dssp             EEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             EEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            76 889998 57999999999999999999997 99999999999999999999987654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=2e-53  Score=390.53  Aligned_cols=273  Identities=25%  Similarity=0.470  Sum_probs=242.5

Q ss_pred             CCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCC-----CHHHHHH
Q 022546            4 DPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM-----TRDDLFN   72 (295)
Q Consensus         4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~-----~r~~~~~   72 (295)
                      .+.+ +++|+|+++  +++.++|+.|..    .+.+++.   |+|+.++++|||+||+++|.|+++|+     +|.+++.
T Consensus        31 ~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~  106 (331)
T 1pzg_A           31 RELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLP  106 (331)
T ss_dssp             HTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHH
T ss_pred             CCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHH
Confidence            3444 499999988  677788888752    2335554   35776799999999999999999999     9999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceE
Q 022546           73 INAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNV  151 (295)
Q Consensus        73 ~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~  151 (295)
                      +|+++++++++.|.+++|++|++++|||+|++|+++   ++.+| ||++||||+ |.||++|+++++|+++|++|++|++
T Consensus       107 ~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~---~~~~~-~~~~rviG~gt~LD~~R~~~~la~~lgv~~~~v~~  182 (331)
T 1pzg_A          107 FNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA  182 (331)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHHHHHHHHHTSCGGGEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH---HHhcC-CChhcEEeccchHHHHHHHHHHHHHhCCCHHHceE
Confidence            999999999999999999999999999999999886   78888 999999999 7999999999999999999999999


Q ss_pred             EEeeCCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHc
Q 022546          152 PVIGGHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLM  222 (295)
Q Consensus       152 ~viG~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~  222 (295)
                      +|||+||+ +++|+||++++++.+         ++++.++++.++++++|+++++.. +||+++||+|.++++++++|++
T Consensus       183 ~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~-~kgst~~~~a~a~~~ii~ai~~  260 (331)
T 1pzg_A          183 TVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLN  260 (331)
T ss_dssp             CEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSCCCHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhh-cCCCccchHHHHHHHHHHHHHh
Confidence            99999998 899999999886531         456678889999999999999852 5689999999999999999999


Q ss_pred             CcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 022546          223 GLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQ  290 (295)
Q Consensus       223 ~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~  290 (295)
                      |++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++...
T Consensus       261 ~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~  326 (331)
T 1pzg_A          261 DEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKAVAA  326 (331)
T ss_dssp             TCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            964   588886 789998 57999999999999999999997 99999999999999999999987643

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.3e-52  Score=385.09  Aligned_cols=274  Identities=23%  Similarity=0.295  Sum_probs=237.5

Q ss_pred             CeEEEEeCC----C--chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH
Q 022546            8 SSLSLYDIA----N--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSL   81 (295)
Q Consensus         8 ~ei~L~D~~----~--~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i   81 (295)
                      .||+|+|++    +  +.+.++||.|+..+..... ..++|++++++|||+||+++|.++++|++|.+++.+|+++++++
T Consensus        37 ~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i-~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i  115 (329)
T 1b8p_A           37 VILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGM-TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQ  115 (329)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEE-EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCccccccchhhHHHHhhhcccccCcE-EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            599999998    5  6789999999743222122 23457789999999999999999999999999999999999999


Q ss_pred             HHHHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccceE-EEeeCCCC
Q 022546           82 CTAIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVNV-PVIGGHAG  159 (295)
Q Consensus        82 ~~~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~  159 (295)
                      ++.++++| |++|++++|||+|++|+++   ++.+++||++|++|+|.||++|+++++|+++|++|++|++ +|||+||+
T Consensus       116 ~~~i~~~~~p~a~ii~~SNPv~~~t~~~---~~~~~~~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~  192 (329)
T 1b8p_A          116 GKAIDAVASRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP  192 (329)
T ss_dssp             HHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST
T ss_pred             HHHHHHhcCCCeEEEEccCchHHHHHHH---HHHcCCCCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC
Confidence            99999997 9999999999999999987   7888349999999999999999999999999999999995 68999998


Q ss_pred             ceeeeccccCcCCCCCC----CHHH--HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEE
Q 022546          160 VTILPLFSQATPKSNNL----SDEE--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVEC  233 (295)
Q Consensus       160 ~~~vp~~s~~~v~~~~~----~~~~--~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~  233 (295)
                       +++|+||++++++.++    ++++  .+++.+++++++++|++.| |. +++++.|.++++++++|+++..  +.++++
T Consensus       193 -s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k-g~-~~~~~~a~a~~~~~~ai~~~~~--~~~~~~  267 (329)
T 1b8p_A          193 -TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-GV-SSAASAANAAIDHIHDWVLGTA--GKWTTM  267 (329)
T ss_dssp             -TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-SS-CCHHHHHHHHHHHHHHHHHCCT--TCCEEE
T ss_pred             -cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc-CC-ChHHHHHHHHHHHHHHHhcCCC--CcEEEE
Confidence             8999999999876432    2223  4789999999999999976 32 3345567789999999999842  247788


Q ss_pred             E-EeeCCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022546          234 T-FVQSSV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQFA  292 (295)
Q Consensus       234 ~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~~  292 (295)
                      + +++|+|  ++++|||+||++ ++|++++++ + +|+++|+++|++|++.|++.++.+.+++
T Consensus       268 s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~~l~~s~~~l~~~~~~~~~~~  328 (329)
T 1b8p_A          268 GIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQERINVTLNELLEEQNGVQHLL  328 (329)
T ss_dssp             EEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             EEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7 779988  689999999999 999999998 7 9999999999999999999999998876

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.1e-52  Score=381.77  Aligned_cols=267  Identities=23%  Similarity=0.283  Sum_probs=211.9

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +..+.+++++|+|+++  +++.++|+.|+.. ....+...  ++ +++++|||+||++++.|+++|++|.+++.+|++++
T Consensus        20 a~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~   96 (304)
T 2v6b_A           20 VLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAGANQKPGESRLDLLEKNADIF   96 (304)
T ss_dssp             HHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC------------CHHHHHHHH
T ss_pred             HhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHH
Confidence            3467788999999987  6788999998752 12233322  24 58899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|+++++++|||+|++++++   ++.+   |++||||+ |.||++|+++++|+++|+++++|+++|||||
T Consensus        97 ~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~---~~~~---~~~rviG~gt~Ld~~r~~~~la~~l~v~~~~v~~~v~G~H  170 (304)
T 2v6b_A           97 RELVPQITRAAPDAVLLVTSNPVDLLTDLA---TQLA---PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH  170 (304)
T ss_dssp             HHHHHHHHHHCSSSEEEECSSSHHHHHHHH---HHHS---CSSCEEECTTHHHHHHHHHHHHHHHTSCGGGEECCEEESS
T ss_pred             HHHHHHHHHhCCCeEEEEecCchHHHHHHH---HHhC---ChhcEEeCCcCchHHHHHHHHHHHhCcCHHHceEEEecCC
Confidence            999999999999999999999999999876   5654   78999999 9999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCC
Q 022546          158 AGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNG  226 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~  226 (295)
                      |+ +++|+||++++++.+           ++++.++++.+++++++++|++   +||+++|++|.++++++++|++|.+ 
T Consensus       171 g~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~~~~a~a~~~~~~ai~~~~~-  245 (304)
T 2v6b_A          171 GD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATYYGIGAALARITEAVLRDRR-  245 (304)
T ss_dssp             ST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CCHHHHHHHHHHHHHHHTTCC-
T ss_pred             CC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcHHHHHHHHHHHHHHHHhCCC-
Confidence            99 899999999986531           3566789999999999999998   6689999999999999999999964 


Q ss_pred             CCceeEEE-EeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          227 VPDIVECT-FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       227 ~~~v~~~~-~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                        .+++++ +++| | . +|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       246 --~~~~~~~~~~g-y-g-~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  302 (304)
T 2v6b_A          246 --AVLTVSAPTPE-Y-G-VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFKQQL  302 (304)
T ss_dssp             --EEEEEEEEETT-T-T-EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC-----
T ss_pred             --cEEEEEEEECC-c-C-cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence              578887 7899 8 3 99999999999999999997 999999999999999999888753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.4e-50  Score=366.31  Aligned_cols=269  Identities=28%  Similarity=0.449  Sum_probs=238.1

Q ss_pred             CCCcCeEEEEeCCC--chhHHHhhhCCC---CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            4 DPLVSSLSLYDIAN--TPGVAADVSHIN---SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~---~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      .+..++++|+|+++  +++...|+.|..   ...++.  . + | ++++++||+||++.+.++++|++|++++.+|++++
T Consensus        22 ~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~--~-~-d-~~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~   96 (319)
T 1a5z_A           22 KGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--A-G-D-YADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVM   96 (319)
T ss_dssp             HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--E-C-C-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE--e-C-C-HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence            45577999999986  567777777643   122333  2 2 4 47899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCC
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGH  157 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h  157 (295)
                      +++++.|++++|+++++++|||++++++++   ++.+| ||++||||+ |.||++|+++++|+++|++|++|+++|||+|
T Consensus        97 ~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~---~~~~~-~~~~rviG~~t~ld~~r~~~~la~~lgv~~~~v~~~v~G~h  172 (319)
T 1a5z_A           97 KEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH  172 (319)
T ss_dssp             HHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBCS
T ss_pred             HHHHHHHHhhCCCeEEEEeCCcHHHHHHHH---HHHhC-CChhhEEeeCccHHHHHHHHHHHHHhCcCHHHceEEEEeCC
Confidence            999999999999999999999999999886   68888 999999999 8999999999999999999999999999999


Q ss_pred             CCceeeeccccCcCCCC-------C---CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCC
Q 022546          158 AGVTILPLFSQATPKSN-------N---LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGV  227 (295)
Q Consensus       158 g~~~~vp~~s~~~v~~~-------~---~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~  227 (295)
                      |+ +++|+||++++++.       .   ++++.++++.++++++++++++   +||+++|++|.++++++++|++|.+  
T Consensus       173 g~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~~~~~~ai~~~~~--  246 (319)
T 1a5z_A          173 GD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGATHYAIALAVADIVESIFFDEK--  246 (319)
T ss_dssp             ST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHHHHHTTCC--
T ss_pred             CC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhc---cCCchHHHHHHHHHHHHHHHHhCCC--
Confidence            98 89999999988652       1   4566788999999999999999   4578999999999999999999854  


Q ss_pred             CceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          228 PDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       228 ~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                       .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++++.
T Consensus       247 -~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~  308 (319)
T 1a5z_A          247 -RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEIT  308 (319)
T ss_dssp             -EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence             578887 789988 57899999999999999999997 9999999999999999999998763

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.2e-48  Score=355.98  Aligned_cols=270  Identities=18%  Similarity=0.228  Sum_probs=231.4

Q ss_pred             CCCcCeEEEEeCCC--chhHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCC----CCCCHHHHHHHHH
Q 022546            4 DPLVSSLSLYDIAN--TPGVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRK----PGMTRDDLFNINA   75 (295)
Q Consensus         4 ~~~~~ei~L~D~~~--~~~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~----~g~~r~~~~~~n~   75 (295)
                      .+...+++|+|+++  +++.+.|+.|..  ....++.+.  +|+ +++++||+||++.+.+++    +|++|++++.+|+
T Consensus        23 ~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~   99 (309)
T 1hyh_A           23 QGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTS   99 (309)
T ss_dssp             HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHH
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHH
Confidence            34467999999987  667777877543  111233322  355 889999999999999988    9999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEe
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVI  154 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~vi  154 (295)
                      ++++++++.+.+++|+++++++|||+|++++++   ++.++ +|++||+|+ |.||++|++..++++++++++++++++|
T Consensus       100 ~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~---~~~~~-~~~~rvig~gt~ld~~r~~~~~a~~l~~~~~~v~~~v~  175 (309)
T 1hyh_A          100 SMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL  175 (309)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHHHHHHHHTCCGGGCBCCEE
T ss_pred             HHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHH---HHhcC-CCHHHEeecCccchHHHHHHHHHHHhCCChhheEEEEE
Confidence            999999999999999999999999999999886   67777 999999999 9999999999999999999999999999


Q ss_pred             eCCCCceeeeccccCcCCCCC------CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCC
Q 022546          155 GGHAGVTILPLFSQATPKSNN------LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVP  228 (295)
Q Consensus       155 G~hg~~~~vp~~s~~~v~~~~------~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~  228 (295)
                      |+||+ +++|+||++.+++.+      ++++.|+++.++++++++++++.   ||+++|++|.++++++++|++|++   
T Consensus       176 G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~~~~~a~a~~~~~~ai~~~~~---  248 (309)
T 1hyh_A          176 GEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYTSYGVATSAIRIAKAVMADAH---  248 (309)
T ss_dssp             BCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHHHTTCC---
T ss_pred             eCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCchHHHHHHHHHHHHHHHcCCC---
Confidence            99998 899999999886532      45667899999999999999995   478999999999999999999975   


Q ss_pred             ceeEEE-EeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546          229 DIVECT-FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF  291 (295)
Q Consensus       229 ~v~~~~-~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~~  291 (295)
                      .+++++ +++|   +++++|+||++|++|+++++++ +|+++|+++|++|++.|++.++...+.
T Consensus       249 ~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~~~  308 (309)
T 1hyh_A          249 AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVDT  308 (309)
T ss_dssp             EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            578876 7788   6899999999999999999997 999999999999999999999987753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=2.7e-46  Score=341.57  Aligned_cols=267  Identities=30%  Similarity=0.456  Sum_probs=237.2

Q ss_pred             eEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546            9 SLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC   82 (295)
Q Consensus         9 ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~   82 (295)
                      +++|+|+++  +++.++|+.+..    ...++..   ++|+ +++++||+||++.|.|+++|++|.+++.+|++++++++
T Consensus        30 ~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~  105 (317)
T 2ewd_A           30 DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVA  105 (317)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHH
T ss_pred             eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHH
Confidence            699999987  566678887642    1234553   2465 89999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCce
Q 022546           83 TAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVT  161 (295)
Q Consensus        83 ~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~  161 (295)
                      +.|.+++|+++++++|||++++++.+   ++.++ +|++||+|+ |.+|+.|++..+++++|+++++++++|+|+||+ +
T Consensus       106 ~~i~~~~~~~iii~~sNp~~~~~~~~---~~~~~-~~~~rviG~~t~ld~~r~~~~la~~lg~~~~~v~~~v~g~Hg~-~  180 (317)
T 2ewd_A          106 EGVKKYCPNAFVICITNPLDVMVSHF---QKVSG-LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGD-G  180 (317)
T ss_dssp             HHHHHHCTTSEEEECCSSHHHHHHHH---HHHHC-CCGGGEEESCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-T
T ss_pred             HHHHHHCCCcEEEEeCChHHHHHHHH---HHhhC-CCHHHEEeccCcHHHHHHHHHHHHHhCcChhhceEEEEecCCC-c
Confidence            99999999999999999999999876   68888 999999999 799999999999999999999999999999998 8


Q ss_pred             eeeccccCcCCCC---------CCCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeE
Q 022546          162 ILPLFSQATPKSN---------NLSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVE  232 (295)
Q Consensus       162 ~vp~~s~~~v~~~---------~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~  232 (295)
                      ++|+||.+++++.         .++.++++++.++++.+++++++.. |+|+++|++|.++++++++|++|++   .+++
T Consensus       181 ~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~~~~~~a~a~~~~~~ai~~~~~---~~~~  256 (317)
T 2ewd_A          181 MVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYFAPAAAAVKMAEAYLKDKK---AVVP  256 (317)
T ss_dssp             CEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEE
T ss_pred             eeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCchHHHHHHHHHHHHHHHHcCCC---eEEE
Confidence            9999999977652         1466778888888888999999864 7889999999999999999999864   5788


Q ss_pred             EE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          233 CT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       233 ~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                      ++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..
T Consensus       257 ~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  314 (317)
T 2ewd_A          257 CSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVNTISKVLD  314 (317)
T ss_dssp             EEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            86 789998 57999999999999999999997 9999999999999999999988753

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=9.6e-44  Score=334.47  Aligned_cols=268  Identities=12%  Similarity=0.090  Sum_probs=216.2

Q ss_pred             CCC-cCeEEEEeCCC-chhHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHH-----------
Q 022546            4 DPL-VSSLSLYDIAN-TPGVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRD-----------   68 (295)
Q Consensus         4 ~~~-~~ei~L~D~~~-~~~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~-----------   68 (295)
                      .++ ++||+|+|+++ ....+.|+.+..  ...+++.   ++|+++|++||||||+++|.++++|++|+           
T Consensus        27 ~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~---t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvg  103 (417)
T 1up7_A           27 EDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIG  103 (417)
T ss_dssp             TTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCC
T ss_pred             cCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEE---eCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCccc
Confidence            566 89999999987 322366776532  1134443   46778999999999999999887777764           


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHH
Q 022546           69 ---------DLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYA  139 (295)
Q Consensus        69 ---------~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la  139 (295)
                               .++.+|+++++++++.|+++| |||+||+|||+|++|+++   +|.+   |++||||+|... .|+++++|
T Consensus       104 qeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~---~k~~---p~~rviG~c~~~-~r~~~~la  175 (417)
T 1up7_A          104 QETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV---RNYL---EYEKFIGLCNVP-INFIREIA  175 (417)
T ss_dssp             CSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH---HHTT---CCSSEEECCSHH-HHHHHHHH
T ss_pred             ccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH---HHhC---CCCCEEEeCCCH-HHHHHHHH
Confidence                     357999999999999999999 999999999999999986   6754   677999997543 49999999


Q ss_pred             hhcCCCCccceEEEee-----------CCCCceeeeccccC---cCCC---CCC---------------------CHHHH
Q 022546          140 GKVNVPVAEVNVPVIG-----------GHAGVTILPLFSQA---TPKS---NNL---------------------SDEEI  181 (295)
Q Consensus       140 ~~l~v~~~~v~~~viG-----------~hg~~~~vp~~s~~---~v~~---~~~---------------------~~~~~  181 (295)
                      +.+|++|++|+++++|           +||+ +++|.||..   ++.+   .++                     +++.+
T Consensus       176 ~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~  254 (417)
T 1up7_A          176 EMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMF  254 (417)
T ss_dssp             HHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECGGGHHHHTHHHHH
T ss_pred             HHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCCchHHHHHHhcCCCccchhhhccCCHHHH
Confidence            9999999999999999           9998 899999985   4422   223                     12333


Q ss_pred             HHH---------HHHhhchhhhhh--------hhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---
Q 022546          182 KAL---------TKRTQDGGTEVV--------EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---  240 (295)
Q Consensus       182 ~~i---------~~~v~~~~~~i~--------~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---  240 (295)
                      +++         .+++++.+++++        +. .+||+++|  |.+++++++||++|++   .+++++ +++|+|   
T Consensus       255 ~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~l  328 (417)
T 1up7_A          255 KKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHLIRDLETDEG---KIHIVNTRNNGSIENL  328 (417)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHHHHHHHSSSC---EEEEEEEECTTSSTTS
T ss_pred             HhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHHHHHHHcCCC---eEEEEEEecCCccCCC
Confidence            444         466777788888        22 24566755  6999999999999975   588887 779987   


Q ss_pred             CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 022546          241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQ  290 (295)
Q Consensus       241 ~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~  290 (295)
                      |+|+++|+||+||++|++++... +|+++|+++++.++...+..++.+++
T Consensus       329 p~d~~vevP~~vg~~Gi~~i~~~-~L~~~e~~~l~~~~~~e~l~veA~~~  377 (417)
T 1up7_A          329 PDDYVLEIPCYVRSGRVHTLSQG-KGDHFALSFIHAVKMYERLTIEAYLK  377 (417)
T ss_dssp             CTTCEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEeEEEeCCceEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999886 99999999999999999988887753

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=5.6e-42  Score=314.23  Aligned_cols=274  Identities=25%  Similarity=0.348  Sum_probs=231.5

Q ss_pred             CeEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546            8 SSLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT   83 (295)
Q Consensus         8 ~ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~   83 (295)
                      .+++|+|+++    ..+.++|+.|+..... .....+.+++++++|+|+||.+++.+++++++|.+++..|+.+++++++
T Consensus        36 ~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~  114 (327)
T 1y7t_A           36 VILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGR  114 (327)
T ss_dssp             EEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4999999874    4678899998643211 1112234667999999999999999999999999999999999999999


Q ss_pred             HHHhhC-CCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHhhcCCCCccce-EEEeeCCCCce
Q 022546           84 AIANYC-PHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKVNVPVAEVN-VPVIGGHAGVT  161 (295)
Q Consensus        84 ~i~~~~-p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~  161 (295)
                      .+++++ |+++++++|||+|+++++.   ++.++.+|+.++.|.|.+|+.|++..+++++|+++..++ .+|+|+|++ +
T Consensus       115 a~~~~~~~~~~vvv~snp~~~~~~~~---~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~  190 (327)
T 1y7t_A          115 ALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-T  190 (327)
T ss_dssp             HHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-T
T ss_pred             HHHhhcCCCeEEEEeCCchhhhHHHH---HHHcCCCChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-e
Confidence            999997 9999999999999998875   566623899999999999999999999999999999998 578999998 8


Q ss_pred             eeeccccCcCCCCC----CCHHH-HHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-E
Q 022546          162 ILPLFSQATPKSNN----LSDEE-IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-F  235 (295)
Q Consensus       162 ~vp~~s~~~v~~~~----~~~~~-~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~  235 (295)
                      ++|.|+++.+.+.+    ++.+. ++++.++++++|++|++.| | +++++++|.++++++++|++|++. +.+++++ +
T Consensus       191 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-~~~~~~~a~a~~~~~~~i~~~~~~-~~~~~~~~~  267 (327)
T 1y7t_A          191 MFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-ASSAASAANAAIEHIRDWALGTPE-GDWVSMAVP  267 (327)
T ss_dssp             CEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-SCCHHHHHHHHHHHHHHHHTBCCT-TCCEEEEEE
T ss_pred             EEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-CCchHHHHHHHHHHHHHHHcCCCC-CeEEEEEEE
Confidence            99999998776532    23322 4789999999999999976 3 234556789999999999999631 2477887 7


Q ss_pred             eeCCC--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 022546          236 VQSSV--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGLESLKPELKASIEKGIQF  291 (295)
Q Consensus       236 ~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l~~s~~~l~~~~~~~~~~  291 (295)
                      ++|+|  ++++|||+||++ ++|++++++ + +|+++|+++|++|++.|+++++.+.++
T Consensus       268 ~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~-~l~~~e~~~l~~s~~~l~~~~~~~~~~  324 (327)
T 1y7t_A          268 SQGEYGIPEGIVYSFPVTA-KDGAYRVVEGL-EINEFARKRMEITAQELLDEMEQVKAL  324 (327)
T ss_dssp             CSSGGGCCTTSEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCccCCCCCeEEEEEEEE-cCCeEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            79988  589999999999 999999988 6 999999999999999999999988764

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=2.5e-41  Score=320.81  Aligned_cols=268  Identities=14%  Similarity=0.166  Sum_probs=211.1

Q ss_pred             CCC-cCeEEEEeCCC--c--hhHHHhhhC-----CCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHH----
Q 022546            4 DPL-VSSLSLYDIAN--T--PGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDD----   69 (295)
Q Consensus         4 ~~~-~~ei~L~D~~~--~--~~~~~Dl~~-----~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~----   69 (295)
                      .++ ++||+|+|+++  .  ++ +.|+.+     ...+.+++.   |+|+++|++|||+||++++.++++|++|++    
T Consensus        32 ~~l~~~ev~L~Di~~~~e~~~~-~~~~~~~~~~~~~~~~~i~~---t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~  107 (450)
T 1s6y_A           32 HELPVGELWLVDIPEGKEKLEI-VGALAKRMVEKAGVPIEIHL---TLDRRRALDGADFVTTQFRVGGLEARAKDERIPL  107 (450)
T ss_dssp             TTCCEEEEEEECCGGGHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGG
T ss_pred             CCCCCCEEEEEEcCCChHHHHH-HHHHHHHHHhhcCCCcEEEE---eCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhh
Confidence            456 89999999976  2  22 233332     223445654   357789999999999999999888887764    


Q ss_pred             ----------------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHH
Q 022546           70 ----------------LFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVR  133 (295)
Q Consensus        70 ----------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R  133 (295)
                                      ++.+|+++++++++.|+++||+||+|++|||+|++|+++   +|.+   |++||||+|.+. .|
T Consensus       108 ~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~---~k~~---p~~rViG~c~~~-~r  180 (450)
T 1s6y_A          108 KYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV---LRYT---KQEKVVGLCNVP-IG  180 (450)
T ss_dssp             GGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHC---CCCCEEECCSHH-HH
T ss_pred             hcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH---HHhC---CCCCEEEeCCcH-HH
Confidence                            489999999999999999999999999999999999987   6764   678999997654 59


Q ss_pred             HHHHHHhhcCCCCccceEEEee-----------CCCCceeeeccccCcCC----C--------CCCC-------------
Q 022546          134 AKTFYAGKVNVPVAEVNVPVIG-----------GHAGVTILPLFSQATPK----S--------NNLS-------------  177 (295)
Q Consensus       134 ~~~~la~~l~v~~~~v~~~viG-----------~hg~~~~vp~~s~~~v~----~--------~~~~-------------  177 (295)
                      +++++|+.+|++|++|+++++|           +||+ +++|.|+.....    +        .++.             
T Consensus       181 ~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~p~~  259 (450)
T 1s6y_A          181 MRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKVLPCP  259 (450)
T ss_dssp             HHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC------------CCCCHHHHHHHCSBCCG
T ss_pred             HHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhccccccccccccCccHHHHHHhcCCccch
Confidence            9999999999999999999999           9998 899999874331    1        0111             


Q ss_pred             --------HHHH-------------HHHHHHhhchhhhhh-----hhcc----CCCcchhhHHHHHHHHHHHHHcCcCCC
Q 022546          178 --------DEEI-------------KALTKRTQDGGTEVV-----EAKA----GKGSATLSMAYAGAVFADACLMGLNGV  227 (295)
Q Consensus       178 --------~~~~-------------~~i~~~v~~~~~~i~-----~~~~----~kg~~~~s~a~a~~~~i~ai~~~~~~~  227 (295)
                              ++.+             .++.+++++.+++++     ..+.    ++|  .+++|.+++++++||++|++  
T Consensus       260 y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~~--~~~~~~~a~~ii~AI~~d~~--  335 (450)
T 1s6y_A          260 YHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRG--GAYYSDAACSLISSIYNDKR--  335 (450)
T ss_dssp             GGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CC--SCCHHHHHHHHHHHHHHTCC--
T ss_pred             hhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhccc--chHHHHHHHHHHHHHHcCCC--
Confidence                    2211             245667777888888     3221    123  34566999999999999975  


Q ss_pred             CceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 022546          228 PDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI  289 (295)
Q Consensus       228 ~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~~  289 (295)
                       .+++++ +++|+|   |+|+++|+||+||++|+++++.. +|+++|+++++.++..-+-.++.++
T Consensus       336 -~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~e~l~veAa~  399 (450)
T 1s6y_A          336 -DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSFERVAAEAAV  399 (450)
T ss_dssp             -CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             588887 679987   58999999999999999999887 9999999999999887766666554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=4.2e-39  Score=293.74  Aligned_cols=269  Identities=24%  Similarity=0.414  Sum_probs=232.3

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC---CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS---PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~---~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      ..+.+++++|+|+++  +.+.++|+.|...   +.++..   +++ ++++++||+||++.+.++++|++|.+++.+|+++
T Consensus        28 ~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-~~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~  103 (319)
T 1lld_A           28 QRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNI  103 (319)
T ss_dssp             HTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESC-GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCC-HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Confidence            356678999999986  5667888776531   224432   234 4789999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec-chhhHHHHHHHHHhhcCCCCccceEEEeeC
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV-TTLDVVRAKTFYAGKVNVPVAEVNVPVIGG  156 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~  156 (295)
                      ++++++.|++++|++++++++||++.+++++   ++.++ +|++||+|. |.+|+.|++..+++++++++.+++.++||+
T Consensus       104 ~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~---~~~~~-~~~~~vig~~~~l~~~r~~~~~a~~~~v~~~~v~~~~~G~  179 (319)
T 1lld_A          104 LKAIMPNLVKVAPNAIYMLITNPVDIATHVA---QKLTG-LPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGE  179 (319)
T ss_dssp             HHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHT-CCTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEECCEEBS
T ss_pred             HHHHHHHHHHhCCCceEEEecCchHHHHHHH---HHhcC-CCHHHEeeccccHhHHHHHHHHHHHhCCCHHHeEEEEEeC
Confidence            9999999999999999999999999999876   66777 999999999 999999999999999999999999999999


Q ss_pred             CCCceeeeccccCcCCCC----------C--CCHHHHHHHHHHhhchhhhhhhhccCCCcchhhHHHHHHHHHHHHHcCc
Q 022546          157 HAGVTILPLFSQATPKSN----------N--LSDEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGL  224 (295)
Q Consensus       157 hg~~~~vp~~s~~~v~~~----------~--~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~  224 (295)
                      ||+ +++|+|+++.+++.          .  .+++.+.++.+++++.++++++   .+|.+.+++|.+.++|+++|++|.
T Consensus       180 ~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~---~~G~~~~~~a~~~~sm~~di~~~~  255 (319)
T 1lld_A          180 HGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GKGATNYAIGMSGVDIIEAVLHDT  255 (319)
T ss_dssp             SST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHT---SCCSCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhh---CCCCchHHHHHHHHHHHHHHHcCC
Confidence            998 89999999876531          1  2334478888999999999988   457888999999999999999986


Q ss_pred             CCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022546          225 NGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK  287 (295)
Q Consensus       225 ~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~  287 (295)
                      +   .+++++ +++|.| ..+.++|+||.++++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       256 ~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  316 (319)
T 1lld_A          256 N---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ  316 (319)
T ss_dssp             C---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             C---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            4   466776 889988 67899999999999999999997 99999999999999999998875

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=6.5e-40  Score=312.39  Aligned_cols=268  Identities=13%  Similarity=0.136  Sum_probs=203.4

Q ss_pred             CC-cCeEEEEeCCC--chhHHHhhhCC-----CCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCH---------
Q 022546            5 PL-VSSLSLYDIAN--TPGVAADVSHI-----NSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTR---------   67 (295)
Q Consensus         5 ~~-~~ei~L~D~~~--~~~~~~Dl~~~-----~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r---------   67 (295)
                      ++ .+||+|+|+++  +++ ..|+.+.     ..+.+++.   |+|+++|++|||+||++++.++++|++|         
T Consensus        54 ~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g  129 (472)
T 1u8x_X           54 EFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYG  129 (472)
T ss_dssp             TSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcC
Confidence            66 89999999987  444 3465543     23456664   3577899999999999999987777777         


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHH
Q 022546           68 -----------DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKT  136 (295)
Q Consensus        68 -----------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~  136 (295)
                                 ++++.+|+++++++++.|+++||+||+|++|||+|++|+++   +|.+   |++||||+|.+. .|+++
T Consensus       130 ~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~---~k~~---p~~rViG~c~~~-~r~~~  202 (472)
T 1u8x_X          130 VVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT---RRLR---PNSKILNICDMP-VGIED  202 (472)
T ss_dssp             CCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH---HHHS---TTCCEEECCSHH-HHHHH
T ss_pred             cccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH---HHhC---CCCCEEEeCCcH-HHHHH
Confidence                       55589999999999999999999999999999999999986   6664   678999997654 49999


Q ss_pred             HHHhhcCCCC-ccceEEEee-----------C-CCCceeeeccccCcC-CC-----------CCCCHHH-----------
Q 022546          137 FYAGKVNVPV-AEVNVPVIG-----------G-HAGVTILPLFSQATP-KS-----------NNLSDEE-----------  180 (295)
Q Consensus       137 ~la~~l~v~~-~~v~~~viG-----------~-hg~~~~vp~~s~~~v-~~-----------~~~~~~~-----------  180 (295)
                      ++|+.||++| ++|+++++|           + ||+ +++|.||...+ .+           .++..+-           
T Consensus       203 ~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (472)
T 1u8x_X          203 RMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADP  281 (472)
T ss_dssp             HHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSSCCCC-------CTTSHHHHHHHHHHTST
T ss_pred             HHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCCCccccccccccchHHHHHhhcCcccccc
Confidence            9999999998 999999999           8 998 89999987432 00           0111000           


Q ss_pred             ---------H----HHHHH----------Hhhc-hhhhhhhhc-cC--CC---cchh---hHHHHHHHHHHHHHcCcCCC
Q 022546          181 ---------I----KALTK----------RTQD-GGTEVVEAK-AG--KG---SATL---SMAYAGAVFADACLMGLNGV  227 (295)
Q Consensus       181 ---------~----~~i~~----------~v~~-~~~~i~~~~-~~--kg---~~~~---s~a~a~~~~i~ai~~~~~~~  227 (295)
                               +    +++.+          ++++ .+.++++.. .+  +|   ++.|   ++|.+++++++||++|++  
T Consensus       282 e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ii~AI~~d~~--  359 (472)
T 1u8x_X          282 DTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTG--  359 (472)
T ss_dssp             TSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCCTTTHHHHHHHHHHHHTCC--
T ss_pred             ccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCcccccccccHHHHHHHHHHHHHhcCCC--
Confidence                     0    11111          1222 222222210 02  33   4445   899999999999999975  


Q ss_pred             CceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          228 PDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       228 ~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                       .+++++ +++|.|   |+|+++|+||+||++|++++... +|+++|+++++.-...-+-.++.+
T Consensus       360 -~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~~~~~~e~l~veAa  422 (472)
T 1u8x_X          360 -ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLMEQQVSVEKLTVEAW  422 (472)
T ss_dssp             -EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             588887 679986   58999999999999999999887 999999999988766555555544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.97  E-value=1.1e-30  Score=247.02  Aligned_cols=262  Identities=19%  Similarity=0.174  Sum_probs=180.7

Q ss_pred             cCeEEEEeCCC--c--hhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCC------------CCCCCCCCH---
Q 022546            7 VSSLSLYDIAN--T--PGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG------------VPRKPGMTR---   67 (295)
Q Consensus         7 ~~ei~L~D~~~--~--~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g------------~~~~~g~~r---   67 (295)
                      .++|+|+|+++  +  .+...+.... .+.+++   .|+|+++|++|||+||++..            .|+|+|+.|   
T Consensus        33 ~geV~L~Di~~e~le~~~~~~~~l~~-~~~~I~---~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vg  108 (450)
T 3fef_A           33 SGTVALYDLDFEAAQKNEVIGNHSGN-GRWRYE---AVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVG  108 (450)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHTTSTT-SCEEEE---EESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHhc-cCCeEE---EECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccch
Confidence            45999999986  2  1233332222 233444   35688899999999999875            578888744   


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHHHHHHHHh
Q 022546           68 -------DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAG  140 (295)
Q Consensus        68 -------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R~~~~la~  140 (295)
                             ...+.+|+++++++++.|+++||+||+|++|||+|++|+++   +|.   +|+.||||+|... .++++.+|+
T Consensus       109 et~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~---~k~---~p~~rviG~C~~~-~~~~~~~a~  181 (450)
T 3fef_A          109 DTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL---YKV---FPGIKAIGCCHEV-FGTQKLLAE  181 (450)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHH---CTTCEEEECCSHH-HHHHHHHHH
T ss_pred             hhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHH---CCCCCEEEeCCcH-HHHHHHHHH
Confidence                   57788999999999999999999999999999999999986   565   6789999999875 799999999


Q ss_pred             hc----C---CCCccceEEEee-CCCCceeeeccccCcCCCCCCCHHH------------------------------HH
Q 022546          141 KV----N---VPVAEVNVPVIG-GHAGVTILPLFSQATPKSNNLSDEE------------------------------IK  182 (295)
Q Consensus       141 ~l----~---v~~~~v~~~viG-~hg~~~~vp~~s~~~v~~~~~~~~~------------------------------~~  182 (295)
                      .|    |   +++++|+..+.| ||..     .|++.+..+.++.+.-                              .-
T Consensus       182 ~l~~~lg~~~~~~~~v~~~~~GlNH~~-----w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (450)
T 3fef_A          182 MVTERLGIEVPRREDIRVNVLGINHFT-----WITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAF  256 (450)
T ss_dssp             HHHHHHCCCCSCGGGEEEEEEEETTEE-----EEEEEEETTEEHHHHHHHHHHHHTTTCCCCTTCCTTSCTTCCCSHHHH
T ss_pred             HHHhhcCCCCCChhHeEEEEeeecCeE-----eEEEEEECCEEChHHHHHHHHhhcccccccccccccccccchhhHHHH
Confidence            99    5   779999999999 8843     2333322221000000                              00


Q ss_pred             HHHHH----------------------------------------hhchhhhhhhhccC-CCcchhhHHHHHHHHHHHHH
Q 022546          183 ALTKR----------------------------------------TQDGGTEVVEAKAG-KGSATLSMAYAGAVFADACL  221 (295)
Q Consensus       183 ~i~~~----------------------------------------v~~~~~~i~~~~~~-kg~~~~s~a~a~~~~i~ai~  221 (295)
                      ++.+.                                        +.+...+..+...+ +.-..-..+.+++++++||+
T Consensus       257 ~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ii~aI~  336 (450)
T 3fef_A          257 DLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALL  336 (450)
T ss_dssp             HHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCSCCHHHHHHHHT
T ss_pred             HHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHHHHhcCCcCcCcCccHHHHHHHHHHHH
Confidence            00000                                        00000000000000 00000001256789999999


Q ss_pred             cCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022546          222 MGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKG  288 (295)
Q Consensus       222 ~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~~~  288 (295)
                      +|++   .+++++ .++|.|   |+|+++|+||++|++|+.++... +|++.++++++.-...-+-.++.+
T Consensus       337 ~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g-~Lp~~~~~l~~~~~~~e~l~veAa  403 (450)
T 3fef_A          337 GLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSG-ALPKGVEMLAARHISNQEAVADAG  403 (450)
T ss_dssp             TSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9975   578887 678986   68999999999999999998764 999999999887665555445544

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.96  E-value=1e-27  Score=228.34  Aligned_cols=265  Identities=17%  Similarity=0.112  Sum_probs=177.3

Q ss_pred             cCeEEEEeCCC--chhHHHhhhC-----CCCCCeEEEeeCCCchhhhcCCCcEEEEcCCC------------CCCCCCCH
Q 022546            7 VSSLSLYDIAN--TPGVAADVSH-----INSPAQVEGYAGEEQLGKALEGSDVVIIPAGV------------PRKPGMTR   67 (295)
Q Consensus         7 ~~ei~L~D~~~--~~~~~~Dl~~-----~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~------------~~~~g~~r   67 (295)
                      ..||+|+|+++  +++ +.++.+     ...+.+++.   |+|+++|++|||+||++++.            |+|+|+.|
T Consensus        32 ~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~  107 (480)
T 1obb_A           32 GSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYR  107 (480)
T ss_dssp             TCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTT
T ss_pred             CCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhCCCCEEEECCCccccccccccccccccccccc
Confidence            78999999987  333 333322     223445654   35777999999999999986            44556544


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecchhhHHH
Q 022546           68 --------------DDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVR  133 (295)
Q Consensus        68 --------------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t~ld~~R  133 (295)
                                    ..++.+|+++++++++.|+++||+||+|++|||+|++|+++   +|    +|++||||+|.++. +
T Consensus       108 ~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~---~k----~p~~rviG~c~~~~-~  179 (480)
T 1obb_A          108 GIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV---TR----TVPIKAVGFCHGHY-G  179 (480)
T ss_dssp             CTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH---HH----HSCSEEEEECSGGG-H
T ss_pred             chhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH---HH----CCCCcEEecCCCHH-H
Confidence                          34689999999999999999999999999999999999986   56    67899999964443 4


Q ss_pred             HHHHHHhhcCCCCccceEEEee-CCCC---------ceeee-----------------cccc--CcCC-------C----
Q 022546          134 AKTFYAGKVNVPVAEVNVPVIG-GHAG---------VTILP-----------------LFSQ--ATPK-------S----  173 (295)
Q Consensus       134 ~~~~la~~l~v~~~~v~~~viG-~hg~---------~~~vp-----------------~~s~--~~v~-------~----  173 (295)
                      +++++ +.+|++|++|+++|+| ||..         ++.+|                 .|+.  ..+.       +    
T Consensus       180 ~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~  258 (480)
T 1obb_A          180 VMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPI  258 (480)
T ss_dssp             HHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHHHTGGGCCCSSTTCCTTSHHHHHHHHHHSSCEE
T ss_pred             HHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHHccCccccccccccchhhhHHHHHHHhcCCeec
Confidence            78999 9999999999999999 5543         01111                 1321  0000       0    


Q ss_pred             -------CCC------C------------HH-----H----HHHHHHHhhchhhhhhhhccCCC--------cchh----
Q 022546          174 -------NNL------S------------DE-----E----IKALTKRTQDGGTEVVEAKAGKG--------SATL----  207 (295)
Q Consensus       174 -------~~~------~------------~~-----~----~~~i~~~v~~~~~~i~~~~~~kg--------~~~~----  207 (295)
                             ++.      +            .+     +    +.+......+.-+++.+...-++        .++|    
T Consensus       259 ~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (480)
T 1obb_A          259 GDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITKKVAKFIKENPSVRLSDLGSVLGKDLSEKQF  338 (480)
T ss_dssp             GGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCSSSSCCSHHHHHH
T ss_pred             CCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccc
Confidence                   111      0            00     0    11111111112222222110001        0111    


Q ss_pred             ------------hHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCC-CCHHH
Q 022546          208 ------------SMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGP-LSDYE  270 (295)
Q Consensus       208 ------------s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~-L~~~E  270 (295)
                                  ..+..++++++||++|++   .++.++ .++|.+   |+|.++++||+++++|+.++.- ++ |++..
T Consensus       339 ~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~lp~d~vVEvp~~v~~~G~~p~~~-g~~lP~~~  414 (480)
T 1obb_A          339 VLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKI-EPPLPDRV  414 (480)
T ss_dssp             HHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCC-SSCCCHHH
T ss_pred             ccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCCCCCCeEEEEEEEEcCCCCEeecc-CCCCCHHH
Confidence                        112667899999999975   466666 568864   7899999999999999999754 58 99999


Q ss_pred             HHH-HHHHHHHHHHHHHHH
Q 022546          271 KQG-LESLKPELKASIEKG  288 (295)
Q Consensus       271 ~~~-l~~s~~~l~~~~~~~  288 (295)
                      +++ ++.-...-+-.++.+
T Consensus       415 ~~l~~~~~~~~e~l~veA~  433 (480)
T 1obb_A          415 VKYYLRPRIMRMEMALEAF  433 (480)
T ss_dssp             HHHTHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHH
Confidence            999 776655544444444

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.95  E-value=1.1e-27  Score=228.87  Aligned_cols=251  Identities=16%  Similarity=0.103  Sum_probs=169.3

Q ss_pred             CCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCC-------------------
Q 022546            5 PLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGV-------------------   59 (295)
Q Consensus         5 ~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~-------------------   59 (295)
                      +..+||+|+|+++  +.+...++++..    .+.+++.   |+|+++||+||||||+++|.                   
T Consensus        29 ~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~---t~d~~eAl~gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~i  105 (477)
T 3u95_A           29 REDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVK---TESLDEAIEGADFIINTAYPYDPRYHDSGSQRWDEVTKV  105 (477)
T ss_dssp             STTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEE---ESCHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEE---eCCHHHHhCCCCEEEECcccccccccccccccceeeecc
Confidence            3468999999987  567777777652    2345553   46889999999999999864                   


Q ss_pred             CCCCCCCHHHH---------------HHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCee
Q 022546           60 PRKPGMTRDDL---------------FNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF  124 (295)
Q Consensus        60 ~~~~g~~r~~~---------------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kvi  124 (295)
                      |+|+|++|..+               ..+|++++.++++.|+++|||||+||+|||++++|+++   +|++|    .|++
T Consensus       106 p~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~tNP~~i~t~a~---~~~~~----~k~v  178 (477)
T 3u95_A          106 GEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQTANPVFEITQAV---RRWTG----ANII  178 (477)
T ss_dssp             HHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH---HHHHC----CCEE
T ss_pred             CcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEecChHHHHHHHH---HHhCC----CCeE
Confidence            23666665443               24799999999999999999999999999999999987   78776    5899


Q ss_pred             ecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcC---------------------------------
Q 022546          125 GVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATP---------------------------------  171 (295)
Q Consensus       125 G~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v---------------------------------  171 (295)
                      |+|....  ....+++.||+++++|+..+.|-++. +-+..|+....                                 
T Consensus       179 GlC~~~~--~~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~~~G~D~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~d  255 (477)
T 3u95_A          179 GFCHGVA--GVYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFRYRGKDAYPLLDEWIEKELSKWEPKNPWDTQMSPAAMD  255 (477)
T ss_dssp             EECCGGG--HHHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEEETTEECHHHHHHHHHHHTTTCCCSSTTCCTTSHHHHH
T ss_pred             EECCCHH--HHHHHHHHhCCCHHHcEEEEeecCCC-eeeeeeeecCCcccHHHHHHHHhhcccccccCccccccchHHHH
Confidence            9996543  33557788999999999999994444 33332221100                                 


Q ss_pred             -----C---------CC----CCCHH----------------HHHHHHHHhhchh-------hhhhhh--------c--c
Q 022546          172 -----K---------SN----NLSDE----------------EIKALTKRTQDGG-------TEVVEA--------K--A  200 (295)
Q Consensus       172 -----~---------~~----~~~~~----------------~~~~i~~~v~~~~-------~~i~~~--------~--~  200 (295)
                           +         ..    .+..+                ++..+.+.++...       .++.+.        .  .
T Consensus       256 ~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (477)
T 3u95_A          256 MYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHLRRARERLIKLAEEVQENPHLKITEKHPEI  335 (477)
T ss_dssp             HHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHCTTT
T ss_pred             HHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHHhhccchhcccccchh
Confidence                 0         00    00000                0000111111111       111100        0  0


Q ss_pred             CCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 022546          201 GKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL  274 (295)
Q Consensus       201 ~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l  274 (295)
                      ..++..+|  .+++++|+||++|++   .++.++ .++|.+   |+|.++++||+|+++|+.++ ..+++.....+++
T Consensus       336 ~~~~~~~~--e~a~~ii~AI~~~~~---~~~~vNv~N~G~I~nLP~DavVEVpc~Vd~~Gi~P~-~vg~~p~~~~~l~  407 (477)
T 3u95_A          336 FPKGRLSG--EQHIPFINAIANNKR---VRLFLNVENQGALKDFPDDLVMELPVWVDSSGIHRE-KVEPDLTHRIKIF  407 (477)
T ss_dssp             SCSSCCCC--CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEEC-CCCSCCCHHHHHH
T ss_pred             cccccccH--HHHHHHHHHHhCCCC---eEEEEEeecCcccCCCCCCcEEEEEEEEcCCCcccc-cCCCCCHHHHHHH
Confidence            01122344  677899999999975   466666 568875   78999999999999999986 4557877776664

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=83.19  E-value=4.9  Score=37.83  Aligned_cols=92  Identities=12%  Similarity=0.052  Sum_probs=52.3

Q ss_pred             eEEEEeCCC--chhHHHhhhCCCC------------------CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHH
Q 022546            9 SLSLYDIAN--TPGVAADVSHINS------------------PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRD   68 (295)
Q Consensus         9 ei~L~D~~~--~~~~~~Dl~~~~~------------------~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~   68 (295)
                      +++++|+++  ..+.+..++....                  ..+++.   |+| .+++++||+||++.+.|...+.++ 
T Consensus        45 ~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~---ttd-~ea~~~aDvViiaVptp~~~~~~~-  119 (478)
T 3g79_A           45 KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC---TPD-FSRISELDAVTLAIQTPFANPKDL-  119 (478)
T ss_dssp             EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE---ESC-GGGGGGCSEEEECCCCCCCSSCCS-
T ss_pred             eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE---eCc-HHHHhcCCEEEEecCCchhccCCc-
Confidence            899999986  3446666665321                  123443   345 589999999999887765433221 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-cCCccchHHHH
Q 022546           69 DLFNINAGIVKSLCTAIANYC-PHALVNMI-SNPVNSTVPIA  108 (295)
Q Consensus        69 ~~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~d~~t~~~  108 (295)
                         ..+...++..++.|.++. |..+|+.- |-|.+..-.++
T Consensus       120 ---~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~  158 (478)
T 3g79_A          120 ---EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA  158 (478)
T ss_dssp             ---SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHH
T ss_pred             ---cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHH
Confidence               112333444455555554 44544443 55655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	6e-48
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-46
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	3e-34
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	8e-31
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	3e-30
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	6e-29
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	1e-28
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-24
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-23
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	2e-23
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	2e-23
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	3e-23
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	4e-23
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	7e-23
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	2e-22
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	2e-22
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	2e-22
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	5e-22
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	5e-22
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	1e-21
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	2e-21
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	4e-21
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	7e-21
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	1e-20
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	1e-20
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	2e-20
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	2e-20
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	6e-20
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	1e-19
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	2e-19
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	3e-19
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	9e-19
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	1e-18
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	1e-18
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	4e-18
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	6e-17
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	2e-16
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	3e-16
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	1e-15
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	1e-15
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	2e-15
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	1e-14
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	1e-13
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	2e-13
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	3e-12
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	6e-12
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	4e-11

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  155 bits (393), Expect = 6e-48
 Identities = 79/169 (46%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 126 VTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALT 185
           VTTLD++R+ TF A        EV VPVIGGH+GVTILPL SQ      + +++E+  LT
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV--SFTEQEVADLT 58

Query: 186 KRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPF 245
           KR Q+ GTEVVEAKAG GSATLSM  A A F  + +  L G   +VEC +V+       F
Sbjct: 59  KRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARF 118

Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFANR 294
           F+  + LGKNG +E   +G LS +E+  LE +   LK  I  G +F N+
Sbjct: 119 FSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 167

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  152 bits (385), Expect = 1e-46
 Identities = 86/168 (51%), Positives = 117/168 (69%), Gaps = 1/168 (0%)

Query: 126 VTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALT 185
           VTTLD+VRA  F A    +  A V+VPVIGGHAG TI+PL SQ TPK  +   +++  LT
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPK-VDFPQDQLSTLT 59

Query: 186 KRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPF 245
            R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   +VEC+FV+S  T+ P+
Sbjct: 60  GRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPY 119

Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
           F++ + LGK G ++ LG+G +S +E++ +    PELKASI+KG +F  
Sbjct: 120 FSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  119 bits (300), Expect = 3e-34
 Identities = 83/125 (66%), Positives = 99/125 (79%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           +K  PLVS L+LYDIA+TPGVAAD+SHI + A V+GY G EQL   L+G DVV+IPAGVP
Sbjct: 20  LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           RKPGMTRDDLFN NA IV +L  A A +CP A++ +ISNPVNST+PI AEVFKK G Y+ 
Sbjct: 80  RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNP 139

Query: 121 KKLFG 125
            K+FG
Sbjct: 140 NKIFG 144

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  111 bits (278), Expect = 8e-31
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 129 LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPK---SNNLSDEEIKALT 185
           LD  R ++F A ++ V + ++N  V+GGH    +  +          S+ L  E I  L 
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63

Query: 186 KRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPF 245
           +RT++GG E+VE    +GSA  + A +     ++ ++    V         Q  + +  F
Sbjct: 64  ERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-DKTF 121

Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
               V+LG+NG +++  +  L   +   L+     +  + + 
Sbjct: 122 VGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKM 162

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  109 bits (274), Expect = 3e-30
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 129 LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQAT---PKSNNLSDEEIKALT 185
           LD  R +TF A +  V V +V   ++GGH    +           P S  ++ + +  + 
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63

Query: 186 KRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPF 245
           +RT+ GG E+V      GSA  + A A A   +A L     V  +      Q  + ++ F
Sbjct: 64  ERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF 122

Query: 246 FASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
               V LG  G +++L L PL++ E   L +    ++A+++ 
Sbjct: 123 G-VPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 162

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (264), Expect = 6e-29
 Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 2/122 (1%)

Query: 5   PLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKP 63
           P  S LSLYDIA  TPGVA D+SHI +  +++G++GE+    ALEG+DVV+I AGV RKP
Sbjct: 25  PSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGVRRKP 83

Query: 64  GMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKL 123
           GM R DLFN+NAGIVK+L   +A  CP A + +I+NPVN+TV IAAEV KKAG YD+ KL
Sbjct: 84  GMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKL 143

Query: 124 FG 125
           FG
Sbjct: 144 FG 145

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  106 bits (265), Expect = 1e-28
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 16/182 (8%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-------- 178
           T LD  RAK   A K+ V   +V   +I G+   T  P  + A  K              
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 179 --EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFV 236
                       Q  G  V++A+  K S+ +S A A          G      +      
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKAR--KLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIIS 118

Query: 237 QSS---VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
             +   V +   ++  V +       V GL P++D+ ++ ++    EL    E   +F +
Sbjct: 119 DGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLS 177

Query: 294 RS 295
            +
Sbjct: 178 SA 179

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 94.9 bits (235), Expect = 2e-24
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 8/170 (4%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-----EEI 181
             LD  R +     ++ V     +  VIG H G ++  ++S     S  L       ++ 
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSGMNVASIKLHPLDGTNKDK 61

Query: 182 KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVT 241
           +   K  +D      E    KG  + ++  + A  A+  +  L  V  +         + 
Sbjct: 62  QDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIK 121

Query: 242 ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQF 291
           +  F +    L  +G   ++ +  L   E+Q L+     L   I+K ++F
Sbjct: 122 DNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTLW-DIQKDLKF 169

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 92.6 bits (229), Expect = 1e-23
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-------- 178
           T LD  R +   A +  V V  V+  + G H G + +PL+  AT     +SD        
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHD 59

Query: 179 ----EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT 234
               ++ + + +  ++   ++     GKG+   ++  +G    +A L   N +  +    
Sbjct: 60  PLDADKREEIHQEVKNAAYKI---INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSML 116

Query: 235 FVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
                ++++        L + G +  +   P+SD E   L+     LK +  +
Sbjct: 117 KDFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 167

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 91.3 bits (226), Expect = 2e-23
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 1   MKLDPLVSSLSLYDIANTP--GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
             L+  V  ++L DIA     G A D++H  +                L+GS+++++ AG
Sbjct: 19  CLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAG 78

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           + RKPGMTR DL + NAGI+K +   I    P + + +++NP++    I      K    
Sbjct: 79  LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGK 134

Query: 119 DEKKLFGV 126
              ++FG+
Sbjct: 135 PRNEVFGM 142

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 92.2 bits (228), Expect = 2e-23
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 14/176 (7%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN---------NLS 177
           T LD  R +T  A         V+V VIG H    +                        
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 178 DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQ 237
            + ++   ++T+    E++E K     A                  +  +   +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 238 SSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGIQFAN 293
             +      +  V LGK+G + +L L  L++ E +        LK +I +     N
Sbjct: 122 KDL----CISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEITAEEN 172

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 91.8 bits (227), Expect = 3e-23
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 10/170 (5%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTK 186
           T+LD  R +   A  VNV    V+  ++G H G T  P++S A      +  E +KA  +
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTI-AEWVKAHPE 58

Query: 187 RTQDGGTEVVE------AKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
             +D   ++ E       +  K         A A+   +  +  +    +    ++    
Sbjct: 59  IKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQY 118

Query: 241 TEL-PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289
                +  +   + +NG   +L + PL+D+E++ ++    +LK  +    
Sbjct: 119 GINDLYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAF 167

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 91.0 bits (225), Expect = 4e-23
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 9/166 (5%)

Query: 124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN--LSDEEI 181
           FG   LD  R +   + + + PV  V   ++G H G   +P+FS+ +    +   S +E 
Sbjct: 1   FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 58

Query: 182 KALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVT 241
           + L    Q+     ++    KG+     A   A   +A L     V         +    
Sbjct: 59  EQLLGDLQESA---MDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHE 115

Query: 242 ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
           +   F   V LG NG +E++    L DYE+  +     +L    +K
Sbjct: 116 D-TAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 159

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 7e-23
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 16/171 (9%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-------- 178
             LD  R +   A K+ +  +  +  ++G H G + + ++S       +L +        
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 179 ---EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTF 235
              E  K + K   +   EV++ K     A            ++ L  L+ +  +     
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVA---DLIESMLKNLSRIHPVSTMVK 118

Query: 236 VQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
               +    F +    L   G   V+    L D E   L+     L    +
Sbjct: 119 GMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKKSADTLWDIQK 168

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 89.5 bits (221), Expect = 2e-22
 Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 16/169 (9%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD------EE 180
           T LD  R +       ++    V+   +G H G +    +S        +         +
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           + A+ +  + GG  V+    GKG  +  +A +    A A +   +    +          
Sbjct: 61  LAAIEEEARKGGFTVL---NGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-- 115

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289
               + +    +G++G      L  L+  E++ L   +  ++   ++ +
Sbjct: 116 ---MYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIV 160

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEE---QLGKALEGSDVVIIPA 57
           +       +L L     +      V+     +               +  E  D  ++  
Sbjct: 49  VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIG 108

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAE 110
             PR PGM R  L +IN  I      A+      +  V ++ NP N+   I  +
Sbjct: 109 AKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLK 162

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.1 bits (220), Expect = 2e-22
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 10/169 (5%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTK 186
             LD  R +     K+ V     +  V+G H G + +P++S        L        T 
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVNVAGVTLKSLNPAIGTD 61

Query: 187 RTQDGGTEVV--------EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQS 238
           + +     V         E    KG  + ++  +    A + L  L  V  +        
Sbjct: 62  KNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFH 121

Query: 239 SVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
            + E  F +    LG++G  + + +  ++  E+  L+     L    + 
Sbjct: 122 GIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKKSADTLWNMQKN 169

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 88.3 bits (218), Expect = 5e-22
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 21/175 (12%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-------- 178
           T+LD  R +     + NV    V+  ++G H G +    +S AT  +  + D        
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 179 -EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQ 237
            +++  L    ++   +++  K        +  Y            +    + V      
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKG-------ATFYGIGTALMRISKAILRDENAVLPVGAY 112

Query: 238 SSVT---ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289
                     +  +   +G  G  +++   PLS  E + ++     LK  +  G+
Sbjct: 113 MDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGL 166

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 88.4 bits (218), Expect = 5e-22
 Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 14/172 (8%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN---------LS 177
           T LD  R +       +V    V+  +IG H    +                       +
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 178 DEEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQ 237
            ++++ +    +D   +++E K                        +  V   ++  + +
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 238 SSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEKGI 289
             V    +      + +NG  EV+ +  L+D EK         LK+ + +  
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARAF 167

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 87.1 bits (215), Expect = 1e-21
 Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 6/165 (3%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD---EEIKA 183
           T LD  RAK   A K    V  +    + G+   T+ P    A        +    E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 184 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFV--QSSVT 241
                          +A   S+  S A A         +G      +        +  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 242 ELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
           E   ++  V         V GL  ++++ ++ +E    EL   +E
Sbjct: 122 EGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEITAQELLDEME 165

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 85.8 bits (212), Expect = 2e-21
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 1   MKLDPLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
                +   + L DIA         D+ H +S        G +   +    +D+V+I AG
Sbjct: 20  AAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG 78

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
             +KPG +R +L      I+K++   +    P+A+  +I+NPV+    IA  V +K    
Sbjct: 79  PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGL 134

Query: 119 DEKKLFG 125
            E ++FG
Sbjct: 135 PENQIFG 141

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 85.1 bits (210), Expect = 4e-21
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 1   MKLDPLVSSLSLYDI--ANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
           +    L   L L D+      G A D+         +              SD+VII AG
Sbjct: 19  LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           +PRKPGMTR+DL   NAGIVK +   I  +  + ++ ++SNP++    +A          
Sbjct: 79  LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGL 134

Query: 119 DEKKLFGV 126
            ++++ G+
Sbjct: 135 PKERVIGM 142

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 85.3 bits (210), Expect = 7e-21
 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 3/163 (1%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN--NLSDEEIKAL 184
           T LD +R K   A    V + EV   +IG H    +  L + +            +   +
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFKELPI 62

Query: 185 TKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELP 244
            +  +D  T+  +    KG +    A A        +     +  +      +       
Sbjct: 63  DEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDV 122

Query: 245 FFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
                V++G++G +EV+ +  L   E          +K   E+
Sbjct: 123 CIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 164

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 84.9 bits (209), Expect = 1e-20
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 6/163 (3%)

Query: 129 LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLS----DEEIKAL 184
           LD  RA +  A K   PV+ +    + G+   T+   +  A     ++     D+     
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 185 TKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIV-ECTFVQSSVTEL 243
           T     G        A   S+  S A A        ++G  G    +   +     + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
             F   V         V GL  +  + ++ +     EL     
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNELLEEQN 164

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 84.1 bits (207), Expect = 1e-20
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 129 LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATP--------KSNNLSDEE 180
           LD  R K + + K+NV   +VN  ++G H    +L                 +  +SD E
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAE 62

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           ++A+  RT +   E+V   A    A  +     A      L  +     ++E  +  S +
Sbjct: 63  LEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI 122

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELK 282
               F  + V LG NG ++V+ L  L+  EK   +    E K
Sbjct: 123 ----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETK 159

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 84.1 bits (207), Expect = 2e-20
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSD-------- 178
           T LD +R +   + K+ V V  V+  +IG H G + LPL+S       N+++        
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCN 59

Query: 179 ---EEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTF 235
              E+ K + +  +  G  +      KG+    +A +     +  L   N +  +     
Sbjct: 60  FTEEDKKKIAEDVKTAGATI---IKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 116

Query: 236 VQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
               + +    +    +   G  EVL    L+  E++ L     ++K  + +
Sbjct: 117 GMYGIED-VAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 166

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 83.6 bits (206), Expect = 2e-20
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYA---GEEQLGKALEGSDVVIIPA 57
           +        L L DI    GV   V        +         ++   A +  DV I+  
Sbjct: 28  VFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVG 87

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKK 114
            +PR+ GM R DL   N  I K    A+  Y      V ++ NP N+    A++    
Sbjct: 88  SMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPS 145

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 83.2 bits (205), Expect = 6e-20
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 11/166 (6%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEE------ 180
           T LD  RAK   A K  V   +V+   I G+   T +P F  A      + +        
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSS- 239
            +  T   Q  G  +++      S+  S A + A    + +             +   + 
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 240 --VTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA 283
             + E   F+   R   +G  E+       D+  + ++  + EL A
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 80.9 bits (199), Expect = 1e-19
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 1   MKLDPLVSSLSLYDIANTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
           +    L   + L  +   P G A D+   +     +              SDV+++ +G 
Sbjct: 20  LAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 79

Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
           PRKPGM+R+DL  +NA I ++  +  A   P+A++ M++NP+++   +AAEV      + 
Sbjct: 80  PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG----FP 135

Query: 120 EKKLFG 125
           ++++ G
Sbjct: 136 KERVIG 141

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 80.8 bits (199), Expect = 2e-19
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 10/128 (7%)

Query: 1   MKLDPLVSSLSLYDIANTP--GVAADVSH-INSPAQVEGYAGEEQLGKALEGSDVVIIPA 57
           M L    + L L D+      G A D++H +    Q+  YAG+      ++  DV+++ A
Sbjct: 20  MALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY---SDVKDCDVIVVTA 76

Query: 58  GVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGT 117
           G  RKPG TR DL   N  I K +   I  Y  H ++ ++SNPV+    +     +K   
Sbjct: 77  GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSG 132

Query: 118 YDEKKLFG 125
               K+ G
Sbjct: 133 LPVGKVIG 140

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 79.7 bits (196), Expect = 3e-19
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           + +      + L D+         +  I+                 L+GSDVVI+ AGVP
Sbjct: 19  LLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVP 78

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG TR  L   NA ++K +   ++ Y P ++V +++NPV+    +    F K    D 
Sbjct: 79  QKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDP 134

Query: 121 KKLFG 125
           +K+FG
Sbjct: 135 RKVFG 139

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 79.0 bits (194), Expect = 9e-19
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 1   MKLDPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGV 59
            K  P++  L     A              +   + G    +    A + +D  ++    
Sbjct: 31  GKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAA 90

Query: 60  PRKPGMTRDDLFNINAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKKAGTY 118
           PRK GM R DL  +N  I      A+A        V ++ NP N+   IA   +K A   
Sbjct: 91  PRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGL 147

Query: 119 DEKK 122
           + + 
Sbjct: 148 NPRN 151

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 78.6 bits (193), Expect = 1e-18
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 7   VSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPG 64
           +  + L+DI      G A D SH N  A              L G+DVVI+ AG  + PG
Sbjct: 27  LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFTKAPG 86

Query: 65  MT-----RDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYD 119
            +     RDDL  +N  I+  +   I   CP+A + +++NPV+  V +      +     
Sbjct: 87  KSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVP 142

Query: 120 EKKLFGV 126
           + K+ G+
Sbjct: 143 KNKIIGL 149

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 79.1 bits (194), Expect = 1e-18
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%)

Query: 129 LDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATP--------KSNNLSDEE 180
           LD  R + + A  ++V   +V   VIG H    +  +              K   +++++
Sbjct: 4   LDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63

Query: 181 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSV 240
           ++ + + T+  G E+V    G+GSA  + A +    A + L     V         +  +
Sbjct: 64  LEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL 122

Query: 241 TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE 286
            +  F      +G  G + V+ L  L++ EK+  +    ++ A  +
Sbjct: 123 KD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNK 166

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 12/130 (9%)

Query: 1   MKLDPLVSSLSLYDIAN----TPGVAADVSH-INSPAQVEGYAGEEQLGKALEGSDVVII 55
           + L  +   +   DI +    T G AAD +H I   +      G  +      GSDVV+I
Sbjct: 20  IALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE---DTAGSDVVVI 76

Query: 56  PAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            AG+PR+PG TR DL   NA I++ + +++  +    +    SNPV+    +      +A
Sbjct: 77  TAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEA 132

Query: 116 GTYDEKKLFG 125
           G    +++ G
Sbjct: 133 GDRSREQVIG 142

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.3 bits (182), Expect = 6e-17
 Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 27/144 (18%)

Query: 2   KLDPLVSSLSLYDIANTP-GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
             D  +  +  YDI      +  D        + +    +     A+  +  VI      
Sbjct: 24  SEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDT-FEGAVVDAKYVIFQFRPG 82

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIAN-------------------YCPHALVNMISNPV 101
              G   D+   +  G++    T +                        +A +   +NP 
Sbjct: 83  GLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPS 142

Query: 102 NSTVPIAAEVFKKAGTYDEKKLFG 125
                   E  +     + +K  G
Sbjct: 143 G----HITEFVRNY--LEYEKFIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 1   MKLDPLVSSLSLYDIANTP-GVAADVSHINSPAQVEG-YAGEEQLGKALEGSDVVIIPAG 58
             L  L   +    +   P G A D+SH+ S          E     AL G+D VI+ AG
Sbjct: 26  CALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85

Query: 59  VPRKPG-----MTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFK 113
           + + PG      +R+DL   N+ I++ +   I  YCP   + +++NP++  V +  E   
Sbjct: 86  LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASG 145

Query: 114 KAGTYDEKKLFG 125
                    + G
Sbjct: 146 ----VPTNMICG 153

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 72.0 bits (176), Expect = 3e-16
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVP 60
           M    +     + D+         +   ++ A               + +D+V+I AG P
Sbjct: 24  MAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83

Query: 61  RKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDE 120
           +KPG +R DL N N  I+ S+   + +     +  + +NPV+    I      K   + +
Sbjct: 84  QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPK 139

Query: 121 KKLFG 125
           +++ G
Sbjct: 140 ERVIG 144

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 1   MKLDPLVSSLSLYDIANTP--GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
           + L  L   L+L D       G A D+ H  S           +       S +VII AG
Sbjct: 38  ILLKGLADELALVDADTDKLRGEALDLQH-GSLFLSTPKIVFGKDYNVSANSKLVIITAG 96

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
                G TR DL   N  I+K++   +    P   + +++NPV+    +      K   +
Sbjct: 97  ARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVVW----KISGF 152

Query: 119 DEKKLFG 125
              ++ G
Sbjct: 153 PVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 1e-15
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 1   MKLDPLVSSLSLYDIAN--TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
           +    L   L+L D+      G   D+ H +   Q      + +       S +V++ AG
Sbjct: 39  ILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD-KDYSVTANSKIVVVTAG 97

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
           V ++ G +R +L   N  + K +   I  Y P  ++ ++SNPV+    +      K    
Sbjct: 98  VRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGL 153

Query: 119 DEKKLFG 125
            + ++ G
Sbjct: 154 PKHRVIG 160

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 1   MKLDPLVSSLSLYDIANTP--GVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAG 58
           +    +   + L D   +   G A D +H    A                 +D+V+I AG
Sbjct: 25  LMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD-YDDCRDADLVVICAG 83

Query: 59  VPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTY 118
             +KPG TR DL + N  I +S+  ++       L  + +NPV+    I      K    
Sbjct: 84  ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGL 139

Query: 119 DEKKLFG 125
             +++ G
Sbjct: 140 PHERVIG 146

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 67.8 bits (165), Expect = 1e-14
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 9/130 (6%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGE-EQLGKALEGSDVVIIPAGV 59
           +    +       D       A  +   ++ A +E +         AL  +DVVI   G 
Sbjct: 20  LIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGN 79

Query: 60  PR----KPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKA 115
            +     P   R       + +V+S+ T +     H ++ +ISNPV+    +   +F+  
Sbjct: 80  IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHV 135

Query: 116 GTYDEKKLFG 125
             +   K+ G
Sbjct: 136 TGFPAHKVIG 145

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 31/144 (21%)

Query: 7   VSSLSLYDIANTP--GVAADVSH---INSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPR 61
           V  L L DI                 +                +AL+G+D V     V  
Sbjct: 30  VGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGG 89

Query: 62  KPGMTRDDLFNINAGIV--------------------KSLCTAIANYCPHALVNMISNPV 101
                +D+   +  G++                      +   +   CP A +   +NP 
Sbjct: 90  LEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPA 149

Query: 102 NSTVPIAAEVFKKAGTYDEKKLFG 125
                +  E   +     ++K+ G
Sbjct: 150 G----MVTEAVLRY--TKQEKVVG 167

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 25/133 (18%)

Query: 7   VSSLSLYDI----ANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRK 62
           +  L LYD      +    A DV        +E  A  +   +A    D V+    V + 
Sbjct: 32  IRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDP-EEAFTDVDFVMAHIRVGKY 90

Query: 63  PGMTRDDLFNINAGIV--------------------KSLCTAIANYCPHALVNMISNPVN 102
                D+   +  G+V                      +   +  Y P A +   SNP  
Sbjct: 91  AMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA 150

Query: 103 STVPIAAEVFKKA 115
                   +   +
Sbjct: 151 IVAEATRRLRPNS 163

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 1   MKLDPLVSSLSLYDIANTPGVAADVSHINS------PAQVEGYAGEEQLGKALEGSDVVI 54
           +  +P +  L L    ++      +            +    Y   ++  + ++ SDVVI
Sbjct: 20  LAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVI 79

Query: 55  IPAGVPRKPGMTRDDLFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKK 114
           I +GVPRK GM+R DL   NA IV      IA  C   +  +I+NPV+     A      
Sbjct: 80  ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKAL----V 134

Query: 115 AGTYDEKKLFG 125
              ++  ++FG
Sbjct: 135 DSKFERNQVFG 145

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.4 bits (146), Expect = 6e-12
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 19/164 (11%)

Query: 127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTK 186
             LD  R K          +      +IG H G ++    S A        + + +A+  
Sbjct: 2   NQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKSLADFDG----EVDWEAVEN 54

Query: 187 RTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDI---VECTFVQSSVTEL 243
             +    EV++    KG+     A A      A +     +      ++  +   +V   
Sbjct: 55  DVRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV--- 108

Query: 244 PFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIEK 287
                  +LGKNGA EV  +  LSD E + L +    L+  +E+
Sbjct: 109 -AVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRERLEE 149

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.2 bits (140), Expect = 4e-11
 Identities = 15/136 (11%), Positives = 29/136 (21%), Gaps = 29/136 (21%)

Query: 7   VSSLSLYDIA--NTPGVAADVSHINSPAQVE-GYAGEEQLGKALEGSDVVIIPAGVPRKP 63
            S+++L DI       +             +  +     L   +  +D VI  A V    
Sbjct: 31  GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVGGHT 90

Query: 64  GMTRDDLFNI--------------------------NAGIVKSLCTAIANYCPHALVNMI 97
            + +                                       +   I    P A     
Sbjct: 91  YLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQA 150

Query: 98  SNPVNSTVPIAAEVFK 113
           +NP+     +      
Sbjct: 151 ANPIFEGTTLVTRTVP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	100.0
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	100.0
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	100.0
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	100.0
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	100.0
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.98
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.98
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.98
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.98
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.97
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.97
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.97
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.97
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.96
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.96
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.96
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.96
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.96
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.96
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.95
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.95
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.95
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.95
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.94
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.94
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.93
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.92
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.91
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.9
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.89
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.86
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.84
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.81
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.99
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.57
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.48
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.89
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.38
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.14

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.1e-34  Score=240.09  Aligned_cols=164  Identities=23%  Similarity=0.254  Sum_probs=142.5

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEE-EeeCCCCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVP-VIGGHAGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEV  195 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i  195 (295)
                      |.||++|||++||+++||+|++|+++ |||+||+ ++||+||++++++.++          +....+++.++++++++++
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            78999999999999999999999875 5599999 8999999999976432          2234578889999999999


Q ss_pred             hhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeC-CC--CCccEEEEeEEEcCCceEEEccCCCCCHHHH
Q 022546          196 VEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQS-SV--TELPFFASKVRLGKNGADEVLGLGPLSDYEK  271 (295)
Q Consensus       196 ~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~  271 (295)
                      ++.+  +++++|++|.|+++++++|+++.+... +++++ +.+| +|  ++++|||+||++|++|++++.++ +|+++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            9864  367889999999999999999887553 44544 6676 56  68999999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcC
Q 022546          272 QGLESLKPELKASIEKGIQFANRS  295 (295)
Q Consensus       272 ~~l~~s~~~l~~~~~~~~~~~~~~  295 (295)
                      ++|++|++.|+++++.+.++++.|
T Consensus       156 ~~l~~Sa~~L~~~~~~~~~~l~~~  179 (179)
T d5mdha2         156 EKMDLTAKELAEEKETAFEFLSSA  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999865

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.1e-34  Score=233.61  Aligned_cols=167  Identities=47%  Similarity=0.710  Sum_probs=145.7

Q ss_pred             cchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcc
Q 022546          126 VTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSA  205 (295)
Q Consensus       126 ~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~  205 (295)
                      +|.||++||++++|+++|++|++|+++|+|+||+++++|++|++..  ..++..+++++.+++++++.++++.+.|++++
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~--~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~   78 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG--VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSA   78 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT--CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC--CCCcHHHHHHHHHHHHhhhhhhhhhhccCcch
Confidence            3789999999999999999999999999999998777786666543  24778889999999999999999988788899


Q ss_pred             hhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546          206 TLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI  285 (295)
Q Consensus       206 ~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~  285 (295)
                      .||+|.++++++.+|+.+.++...+..+++.....++++|||+||++|++|+++++++++|+++|+++|+.|+++|++.+
T Consensus        79 ~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I  158 (167)
T d2cmda2          79 TLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDI  158 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999877654444444443334678999999999999999999985699999999999999999999


Q ss_pred             HHHhhhhhc
Q 022546          286 EKGIQFANR  294 (295)
Q Consensus       286 ~~~~~~~~~  294 (295)
                      +++++|+++
T Consensus       159 ~~~~~fi~~  167 (167)
T d2cmda2         159 ALGQEFVNK  167 (167)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999999985

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.5e-34  Score=234.61  Aligned_cols=167  Identities=51%  Similarity=0.810  Sum_probs=144.5

Q ss_pred             cchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcc
Q 022546          126 VTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSA  205 (295)
Q Consensus       126 ~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~  205 (295)
                      +|.|||+|||++||++||++|++|+++|+|+||+++++|+||++.+++ .+..++++++.++++++++++++.+.+.+++
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~-~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~   79 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKV-DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA   79 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCC-CCCHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCC-CCcHHHHHHHHHHHHHhHHHHHHhhcCcChH
Confidence            378999999999999999999999999999997768999888887765 4788899999999999999999988666778


Q ss_pred             hhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 022546          206 TLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASI  285 (295)
Q Consensus       206 ~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~  285 (295)
                      .++++.++++++.+++.+.++...+.++++....+.+++|||+||+||++|+++++++++|+++|+++|+.|++.|++.+
T Consensus        80 ~~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I  159 (169)
T d1mlda2          80 TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASI  159 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence            88999999999999987765444454444332222568999999999999999999986799999999999999999999


Q ss_pred             HHHhhhhh
Q 022546          286 EKGIQFAN  293 (295)
Q Consensus       286 ~~~~~~~~  293 (295)
                      +++++|+.
T Consensus       160 ~~g~~fi~  167 (169)
T d1mlda2         160 KKGEEFVK  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999985

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=4e-34  Score=234.87  Aligned_cols=154  Identities=24%  Similarity=0.425  Sum_probs=140.4

Q ss_pred             hhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC----CCCHHHHHHHHHHhhchhhhhhhhccCCC
Q 022546          128 TLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN----NLSDEEIKALTKRTQDGGTEVVEAKAGKG  203 (295)
Q Consensus       128 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~----~~~~~~~~~i~~~v~~~~~~i~~~~~~kg  203 (295)
                      +||++||+++||+++|++|++|+++||||||+ +++|+||++++++.    .++++.++++.++++++|+++++.+ |||
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            79999999999999999999999999999999 89999999999764    2556678899999999999999865 789


Q ss_pred             cchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 022546          204 SATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPEL  281 (295)
Q Consensus       204 ~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l  281 (295)
                      +++|++|.++.+++.+++.+.+   .+++++ +.+|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999865   477776 778988 67999999999999999999998 99999999999999999


Q ss_pred             HHHHHH
Q 022546          282 KASIEK  287 (295)
Q Consensus       282 ~~~~~~  287 (295)
                      ++.++.
T Consensus       157 ~~~i~~  162 (163)
T d1guza2         157 DENCKM  162 (163)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            988763

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.1e-34  Score=231.29  Aligned_cols=145  Identities=23%  Similarity=0.264  Sum_probs=129.2

Q ss_pred             chhhHHHHHHHHHhhcCCCCccc-eEEEeeCCCCceeeeccccCcCCCCCCCHHHHHHHHHHhhchhhhhhhhccCCCcc
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEV-NVPVIGGHAGVTILPLFSQATPKSNNLSDEEIKALTKRTQDGGTEVVEAKAGKGSA  205 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v-~~~viG~hg~~~~vp~~s~~~v~~~~~~~~~~~~i~~~v~~~~~~i~~~~~~kg~~  205 (295)
                      |.|||+|||++|++.+   +.++ ++||+||||+ ++||+||.++++++    .+++++.+++++++++|++.   ||+|
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~g~----~~~~~i~~~v~~~g~eIi~~---kG~t   70 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFDGE----VDWEAVENDVRFVAAEVIKR---KGAT   70 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCBSC----CCHHHHHHHHHTTHHHHHHH---HSSC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-ccccccccccccCc----cchhHhHHHHHHHHHHhhhh---ccce
Confidence            6899999999998765   4455 8999999999 89999999999764    24568899999999999994   5899


Q ss_pred             hhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHH
Q 022546          206 TLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKA  283 (295)
Q Consensus       206 ~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~  283 (295)
                      +||+|.++++++++|+.|.+   .++|++ +++|+| .+|+|+|+||+||++|++ ++++ +|+++|+++|++|++.|++
T Consensus        71 ~~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~  145 (152)
T d1ojua2          71 IFGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRE  145 (152)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999975   588997 789999 679999999999999985 8898 9999999999999999998


Q ss_pred             HHHH
Q 022546          284 SIEK  287 (295)
Q Consensus       284 ~~~~  287 (295)
                      .++.
T Consensus       146 ~i~~  149 (152)
T d1ojua2         146 RLEE  149 (152)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8764

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=100.00  E-value=6.9e-34  Score=233.70  Aligned_cols=154  Identities=27%  Similarity=0.433  Sum_probs=140.9

Q ss_pred             hhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCC----CCHHHHHHHHHHhhchhhhhhhhccCCC
Q 022546          128 TLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN----LSDEEIKALTKRTQDGGTEVVEAKAGKG  203 (295)
Q Consensus       128 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~----~~~~~~~~i~~~v~~~~~~i~~~~~~kg  203 (295)
                      +||++||++++|++||++|++|+++|||+||+ +++|+||++++++.+    +++..++++.++++++++++++.+ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            69999999999999999999999999999999 899999999997643    456778999999999999998865 789


Q ss_pred             cchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHH
Q 022546          204 SATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPEL  281 (295)
Q Consensus       204 ~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l  281 (295)
                      ++.|++|.++++++++|+.+.+   .+++++ +++|+| .++++||+||++|++|+++++++ +||++|+++|++|++.|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999875   467766 789998 67899999999999999999998 99999999999999999


Q ss_pred             HHHHHH
Q 022546          282 KASIEK  287 (295)
Q Consensus       282 ~~~~~~  287 (295)
                      +++++.
T Consensus       157 k~~i~~  162 (164)
T d1uxja2         157 RATLDT  162 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=6.7e-34  Score=235.30  Aligned_cols=159  Identities=19%  Similarity=0.320  Sum_probs=144.2

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC---------CCCHHHHHHHHHHhhchhhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN---------NLSDEEIKALTKRTQDGGTEVVE  197 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~---------~~~~~~~~~i~~~v~~~~~~i~~  197 (295)
                      |.||++||+++||+++|++|++|+++|||+||+ +++|+||++++++.         .+..+++.++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            789999999999999999999999999999998 99999999999763         24566788899999999999988


Q ss_pred             hccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 022546          198 AKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE  275 (295)
Q Consensus       198 ~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~  275 (295)
                      .   +|++.|++|.++.+++++++.+.+   .+++++ +++++| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ~---k~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 L---KGATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             H---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             h---hhhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            4   578999999999999999999864   466665 789988 78999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 022546          276 SLKPELKASIEKGIQFAN  293 (295)
Q Consensus       276 ~s~~~l~~~~~~~~~~~~  293 (295)
                      +|++.|++++++++..++
T Consensus       153 ~s~~~l~~~i~~~l~~l~  170 (171)
T d1ez4a2         153 DSAATLKKVLNDGLAELE  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998764

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=8e-34  Score=234.65  Aligned_cols=153  Identities=21%  Similarity=0.355  Sum_probs=137.5

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC------------CCCHHHHHHHHHHhhchhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN------------NLSDEEIKALTKRTQDGGTE  194 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~------------~~~~~~~~~i~~~v~~~~~~  194 (295)
                      |+||++||+++||+++|+++++|+++|||+||+ +++|+||++++++.            .++...++++.+++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            789999999999999999999999999999999 99999999988652            13455678999999999999


Q ss_pred             hhhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 022546          195 VVEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQ  272 (295)
Q Consensus       195 i~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~  272 (295)
                      |++   +||++.|++|.++++++.+|+.+..   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            998   5689999999999999999999864   466666 778888 78999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 022546          273 GLESLKPELKASIEK  287 (295)
Q Consensus       273 ~l~~s~~~l~~~~~~  287 (295)
                      +|++|++.||+.+++
T Consensus       153 ~l~~sa~~lk~~~~~  167 (170)
T d1llda2         153 ALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987653

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=100.00  E-value=3.6e-33  Score=233.55  Aligned_cols=162  Identities=21%  Similarity=0.178  Sum_probs=138.5

Q ss_pred             chhhHHHHHHHHHhhcCCCCccce-EEEeeCCCCceeeeccccCcCCCCC----CCHHH--HHHHHHHhhchhhhhhhhc
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVN-VPVIGGHAGVTILPLFSQATPKSNN----LSDEE--IKALTKRTQDGGTEVVEAK  199 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~-~~viG~hg~~~~vp~~s~~~v~~~~----~~~~~--~~~i~~~v~~~~~~i~~~~  199 (295)
                      |.||++|||++||+++||+|++|+ .+||||||+ ++||+||++++++.+    .+++.  ++++.+.++++++++++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            789999999999999999999997 568899999 999999999997642    23333  4889999999999999975


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCC-C--CCccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHH
Q 022546          200 AGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSS-V--TELPFFASKVRLGKNGADEVLG-LGPLSDYEKQGL  274 (295)
Q Consensus       200 ~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~v~~-~~~L~~~E~~~l  274 (295)
                        ++++++|+|.|+++++++|+.+++.. .+++++ +++|+ |  ++|+|||+||++|++|+++++. + +|+++|+++|
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~-~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l-~L~~~e~~~l  155 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEG-DWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWERI  155 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTT-CCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCC-ceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCC-CCCHHHHHHH
Confidence              35677789999999999999998754 355665 67885 7  5799999999999999999975 6 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 022546          275 ESLKPELKASIEKGIQFAN  293 (295)
Q Consensus       275 ~~s~~~l~~~~~~~~~~~~  293 (295)
                      ++|+++|+++.+...+++.
T Consensus       156 ~~S~~eL~~e~~~v~~Llg  174 (188)
T d7mdha2         156 KKSEAELLAEKKCVAHLTG  174 (188)
T ss_dssp             HHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999887766553

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=5e-33  Score=230.67  Aligned_cols=156  Identities=22%  Similarity=0.359  Sum_probs=135.8

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCC---------CCHHHHHHHHHHhhchhhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN---------LSDEEIKALTKRTQDGGTEVVE  197 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~---------~~~~~~~~i~~~v~~~~~~i~~  197 (295)
                      |+||++||+++||+++|++|++|+++||||||+ +++|+||++++++.+         ....++.+.....+.++.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            799999999999999999999999999999999 999999999997632         2344566677677777877776


Q ss_pred             hccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 022546          198 AKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE  275 (295)
Q Consensus       198 ~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~  275 (295)
                      .+ ++|+++|++|.++++++++|+.+.+   .+++++ +.+|+| .+++|||+||+||++|+++++++ +|+++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            55 7899999999999999999999864   477776 678888 56899999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHH
Q 022546          276 SLKPELKASIEKG  288 (295)
Q Consensus       276 ~s~~~l~~~~~~~  288 (295)
                      +|++.|+++.+..
T Consensus       156 ~s~~~l~~~~~~v  168 (174)
T d1pzga2         156 KSVDDVMALNKAV  168 (174)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999865543

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.7e-33  Score=228.45  Aligned_cols=157  Identities=22%  Similarity=0.341  Sum_probs=139.9

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC----------CCCHHHHHHHHHHhhchhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN----------NLSDEEIKALTKRTQDGGTEVV  196 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~----------~~~~~~~~~i~~~v~~~~~~i~  196 (295)
                      |+||++||+++||+++|++|++|+++|||+||+ +++|+||++++++.          .++.+.++++.+.+++++++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            689999999999999999999999999999999 99999999988652          2455667899999999999998


Q ss_pred             hhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 022546          197 EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL  274 (295)
Q Consensus       197 ~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l  274 (295)
                      ..   ++++.|++|.++++++.+++.+.+   .+.+++ +.+|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        81 ~~---~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 ER---KGATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             ec---cccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            84   478999999999999999999864   466666 678887 67999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 022546          275 ESLKPELKASIEKGIQF  291 (295)
Q Consensus       275 ~~s~~~l~~~~~~~~~~  291 (295)
                      ++|++.|++.++.....
T Consensus       154 ~~sa~~lk~~i~~l~~~  170 (172)
T d1a5za2         154 RKSASILKNAINEITAE  170 (172)
T ss_dssp             HHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.7e-33  Score=232.38  Aligned_cols=154  Identities=22%  Similarity=0.330  Sum_probs=136.6

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEV  195 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i  195 (295)
                      |+||++||+++||+++|++|++|+++||||||+ +++|+||++++++.+           ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            789999999999999999999999999999999 999999999987532           12234578999999999999


Q ss_pred             hhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 022546          196 VEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQG  273 (295)
Q Consensus       196 ~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~  273 (295)
                      ++   +++++.|++|.++++++++++.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +||++|+++
T Consensus        80 ~~---~~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IK---NKGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HH---HTSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hh---hhhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            88   4589999999999999999999864   477776 789998 56999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 022546          274 LESLKPELKASIEKG  288 (295)
Q Consensus       274 l~~s~~~l~~~~~~~  288 (295)
                      |++|++.|++++++.
T Consensus       153 l~~s~~~lk~~~~~v  167 (169)
T d1y6ja2         153 LRFSAEQVKKVLNEV  167 (169)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998864

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.2e-32  Score=226.47  Aligned_cols=153  Identities=27%  Similarity=0.341  Sum_probs=137.3

Q ss_pred             hhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCC---------CCCHHHHHHHHHHhhchhhhhhhh
Q 022546          128 TLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSN---------NLSDEEIKALTKRTQDGGTEVVEA  198 (295)
Q Consensus       128 ~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~---------~~~~~~~~~i~~~v~~~~~~i~~~  198 (295)
                      +||++||+++||+++|++|++|+++|||+||+ +++|+||++++++.         ...++++.++.+.++++++++++ 
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN-   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh-
Confidence            69999999999999999999999999999999 89999999988652         24456778899999999999988 


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 022546          199 KAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES  276 (295)
Q Consensus       199 ~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~  276 (295)
                        ++|++.|++|.+++.++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++
T Consensus        80 --~~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          80 --LHASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             --HTSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             --hccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence              5578999999999999999999875   466665 789998 77999999999999999999998 899999999999


Q ss_pred             HHHHHHHHHHHH
Q 022546          277 LKPELKASIEKG  288 (295)
Q Consensus       277 s~~~l~~~~~~~  288 (295)
                      |+++|++..+.|
T Consensus       154 s~~~lk~~~~~A  165 (165)
T d1t2da2         154 AIAETKRMKALA  165 (165)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999887653

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.98  E-value=5.6e-32  Score=221.24  Aligned_cols=156  Identities=25%  Similarity=0.420  Sum_probs=138.8

Q ss_pred             eecchhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCC--CCHHHHHHHHHHhhchhhhhhhhccC
Q 022546          124 FGVTTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN--LSDEEIKALTKRTQDGGTEVVEAKAG  201 (295)
Q Consensus       124 iG~t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~--~~~~~~~~i~~~v~~~~~~i~~~~~~  201 (295)
                      || |+||++||+++||+++|++|++|+++|||+||+ +++|+||++++++++  ...++++++.++++..+.++++   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            46 899999999999999999999999999999999 899999999987542  4566788888999999999877   5


Q ss_pred             CCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 022546          202 KGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKP  279 (295)
Q Consensus       202 kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~  279 (295)
                      ++++.+++|.++++++.+++.+..   .+++++ +++++| +++++||+||++|++|+++++++ +|+++|+++|++|++
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhccc---cceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            578999999999999999998864   355555 778887 77999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHH
Q 022546          280 ELKASIEKG  288 (295)
Q Consensus       280 ~l~~~~~~~  288 (295)
                      .|++++++.
T Consensus       152 ~L~~~~~~i  160 (161)
T d1o6za2         152 KLSDQYDKI  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998763

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.98  E-value=2.1e-32  Score=224.49  Aligned_cols=156  Identities=15%  Similarity=0.215  Sum_probs=135.5

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCC----C--HHHHHHHHHHhhchhhhhhhhcc
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNL----S--DEEIKALTKRTQDGGTEVVEAKA  200 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~----~--~~~~~~i~~~v~~~~~~i~~~~~  200 (295)
                      |.||++||+++||+++|++|++|+++|||+||+ +++|+||++++++.++    .  +..++++.++++++++++++.  
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--   78 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG--   78 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHH--
Confidence            689999999999999999999999999999999 8999999999976422    1  224579999999999999984  


Q ss_pred             CCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEEEeeCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 022546          201 GKGSATLSMAYAGAVFADACLMGLNGVPDIVECTFVQSSVTELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPE  280 (295)
Q Consensus       201 ~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~  280 (295)
                       ||+++|++|.++.+++.++..+.+   .+.+++...+  .+++|||+||++|++|+++++++ +|+++|+++|++|++.
T Consensus        79 -kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          79 -KGYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             -HHhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence             578999999999999999999864   3555553222  35799999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 022546          281 LKASIEKGIQFA  292 (295)
Q Consensus       281 l~~~~~~~~~~~  292 (295)
                      |+++++++++.+
T Consensus       152 l~~~~~~~~~~l  163 (163)
T d1hyha2         152 IQQRFDEIVDTL  163 (163)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=1.6e-32  Score=226.30  Aligned_cols=156  Identities=20%  Similarity=0.288  Sum_probs=130.9

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCCC------HHHHHHHHHHhhchhhhhhhhcc
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLS------DEEIKALTKRTQDGGTEVVEAKA  200 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~------~~~~~~i~~~v~~~~~~i~~~~~  200 (295)
                      |+||++||++++|++||++|++|+++|||+||+ +++|+||++++++.++.      ...++++.++++++++++++   
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---   78 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHH---
Confidence            799999999999999999999999999999999 99999999998763221      12356788888888888877   


Q ss_pred             CCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 022546          201 GKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL  277 (295)
Q Consensus       201 ~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s  277 (295)
                      .++++.|++|.+++.++.+++.+.+   .+++++ ++.++|  ++++|||+||++|++|+++++++ +||++|+++|++|
T Consensus        79 ~k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          79 LKGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             hccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence            4577889999999999999999864   355554 677775  78999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 022546          278 KPELKASIEKGIQ  290 (295)
Q Consensus       278 ~~~l~~~~~~~~~  290 (295)
                      ++.|++.+++..+
T Consensus       155 a~~lk~~~~~~k~  167 (168)
T d1hyea2         155 AEIIKKYCEEVKN  167 (168)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.98  E-value=4.4e-32  Score=223.52  Aligned_cols=155  Identities=23%  Similarity=0.347  Sum_probs=136.2

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEVV  196 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i~  196 (295)
                      |.||++||+++||++||++|++|+++|||+||+ +++|+||++++++.++          .....+++.+.++..+.+++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            789999999999999999999999999999999 9999999998865211          12345678888888888887


Q ss_pred             hhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 022546          197 EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL  274 (295)
Q Consensus       197 ~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l  274 (295)
                      ..   +|++.|++|.++.+++.+++.+.+   .+++++ +.+++| ++++|||+||++|++|+++++++ +||++|+++|
T Consensus        80 ~~---~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 EK---KGATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             Hh---hccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            74   478999999999999999999864   467776 678888 78999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 022546          275 ESLKPELKASIEKGI  289 (295)
Q Consensus       275 ~~s~~~l~~~~~~~~  289 (295)
                      ++|++.|++.+++|+
T Consensus       153 ~~s~~~lk~~i~~a~  167 (168)
T d1ldna2         153 HHSAATLKSVLARAF  167 (168)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999875

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.97  E-value=4.6e-32  Score=224.32  Aligned_cols=152  Identities=19%  Similarity=0.235  Sum_probs=134.6

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCC-----------CCHHHHHHHHHHhhchhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNN-----------LSDEEIKALTKRTQDGGTEV  195 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~-----------~~~~~~~~i~~~v~~~~~~i  195 (295)
                      |.||++||+++||+++|+++++|+++|||+||+ +++|+||++++++.+           ...+.++++.+++++++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            789999999999999999999999999999999 899999999987531           12234678888999999999


Q ss_pred             hhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 022546          196 VEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQ  272 (295)
Q Consensus       196 ~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~  272 (295)
                      ++.   +++++|++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---~~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IKL---KGYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             eec---ccccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            884   478999999999999999999854   578887 679998  56999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHH
Q 022546          273 GLESLKPELKASIE  286 (295)
Q Consensus       273 ~l~~s~~~l~~~~~  286 (295)
                      +|++|++.|++..+
T Consensus       155 ~l~~Sa~~l~~~~~  168 (172)
T d1i0za2         155 QLKKSADTLWDIQK  168 (172)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.3e-31  Score=213.42  Aligned_cols=125  Identities=66%  Similarity=1.061  Sum_probs=113.5

Q ss_pred             CCCCCCcCeEEEEeCCCchhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIANTPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS   80 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~   80 (295)
                      |+++++++||+|+|+++++|+++|++|+...........+.+.+++++|||+||+++|.|+++||+|++++..|++++++
T Consensus        20 l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~   99 (144)
T d1mlda1          20 LKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT   99 (144)
T ss_dssp             HHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHH
T ss_pred             HHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHH
Confidence            45789999999999988999999999987555555544556778999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           81 LCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        81 i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +++.|.+++|+++++++|||+|+|++++++++|+++.||++||||
T Consensus       100 i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1         100 LTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             HHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             HHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999988887777799999998

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.97  E-value=3e-33  Score=231.60  Aligned_cols=158  Identities=22%  Similarity=0.364  Sum_probs=138.5

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCC----------CHHHHHHHHHHhhchhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNL----------SDEEIKALTKRTQDGGTEVV  196 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~----------~~~~~~~i~~~v~~~~~~i~  196 (295)
                      |.||++||+++||+++|+++++|+++||||||+ +++|+||++++++.+.          +...++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            789999999999999999999999999999999 9999999998876322          12234677778888899988


Q ss_pred             hhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 022546          197 EAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV-TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGL  274 (295)
Q Consensus       197 ~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l  274 (295)
                      +   ++|++.|++|.++++++.+++.+.+   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCC---CCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCC---CccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   6789999999999999999999865   366665 789999 67899999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 022546          275 ESLKPELKASIEKGIQFA  292 (295)
Q Consensus       275 ~~s~~~l~~~~~~~~~~~  292 (295)
                      ++|+++|++.+++++.-+
T Consensus       153 ~~s~~~lk~~i~~~~~~~  170 (172)
T d1llca2         153 QKSASQLKKVLTDAFAKN  170 (172)
T ss_dssp             HTTTTTTTTTTTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999888877644

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.97  E-value=1.3e-31  Score=220.88  Aligned_cols=156  Identities=22%  Similarity=0.316  Sum_probs=132.2

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCC--------CHHHHHHHHHHhhchhhhhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNL--------SDEEIKALTKRTQDGGTEVVEA  198 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~--------~~~~~~~i~~~v~~~~~~i~~~  198 (295)
                      |.||++||+++||++||++|++|+++|||+||+ +++|+||++++++.++        ....+.++..++++++.++.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            789999999999999999999999999999999 8999999999875322        112334555666777777766 


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 022546          199 KAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLE  275 (295)
Q Consensus       199 ~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~  275 (295)
                        +++++.|++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence              4578999999999999999999864   477776 779998  57899999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 022546          276 SLKPELKASIEKGIQF  291 (295)
Q Consensus       276 ~s~~~l~~~~~~~~~~  291 (295)
                      +|++.|+ ++.+.++|
T Consensus       155 ~s~~~l~-~~~k~lkf  169 (169)
T d1ldma2         155 KSATTLW-DIQKDLKF  169 (169)
T ss_dssp             HHHHHHH-HHHHTCCC
T ss_pred             HHHHHHH-HHHHhcCC
Confidence            9999998 56666554

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.97  E-value=2.4e-31  Score=212.92  Aligned_cols=119  Identities=28%  Similarity=0.429  Sum_probs=105.5

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCCCC-eEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINSPA-QVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~~-~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +++++++||+|+|+++  ++|+++||+|+.... ..... .++| +++++|||+||+++|.++++|++|++++..|++++
T Consensus        21 ~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~-~~~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~   98 (143)
T d1llda1          21 AQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNIL   98 (143)
T ss_dssp             HHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESC-GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHH
T ss_pred             HhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCC-HHHhhCCcEEEEecccccCCCCchhhhhhhhHHHH
Confidence            4689999999999988  899999999985321 12222 2345 58899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      +++++.|++++|+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        99 ~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~---~~~sg-~p~~rViG~  142 (143)
T d1llda1          99 KAIMPNLVKVAPNAIYMLITNPVDIATHVA---QKLTG-LPENQIFGS  142 (143)
T ss_dssp             HHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHT-CCTTSEEEC
T ss_pred             HHHHHHHHhhCCCeEEEEeCCchHHHHHHH---HHHHC-CChhhccCC
Confidence            999999999999999999999999999987   89999 999999997

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.9e-30  Score=213.67  Aligned_cols=159  Identities=23%  Similarity=0.224  Sum_probs=129.6

Q ss_pred             cchhhHHHHHHHHHhhcCCCCccceEE-EeeCCCCceeeeccccCcCCCCCC----CHH-HHHHHHHHhhchhhhhhhhc
Q 022546          126 VTTLDVVRAKTFYAGKVNVPVAEVNVP-VIGGHAGVTILPLFSQATPKSNNL----SDE-EIKALTKRTQDGGTEVVEAK  199 (295)
Q Consensus       126 ~t~ld~~R~~~~la~~l~v~~~~v~~~-viG~hg~~~~vp~~s~~~v~~~~~----~~~-~~~~i~~~v~~~~~~i~~~~  199 (295)
                      +|.||++|||++||+++|++|++|+++ |||+||+ +++|+||++++++.++    .+. ...+..++..+.+.+++.. 
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA-   78 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHH-
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHH-
Confidence            488999999999999999999999875 6799999 8999999999986432    222 2344444555555566554 


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 022546          200 AGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLES  276 (295)
Q Consensus       200 ~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~  276 (295)
                       .+++++|++|.++++++++++.+.++. .++|++ +++|+|  ++++++|+||+++++|++.+.++ +||++|+++|+.
T Consensus        79 -~~~~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          79 -RGASSAASAANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHHTBCCTT-CCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             -hccCchhhHHHHHHHHHHHHhcccCCC-CceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence             356789999999999999999986643 578887 779998  68999999999987777666667 999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 022546          277 LKPELKASIEKGI  289 (295)
Q Consensus       277 s~~~l~~~~~~~~  289 (295)
                      |+++|+++++...
T Consensus       156 s~~~L~~~~e~vk  168 (173)
T d1y7ta2         156 TAQELLDEMEQVK  168 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998654

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-30  Score=214.48  Aligned_cols=154  Identities=21%  Similarity=0.324  Sum_probs=132.0

Q ss_pred             chhhHHHHHHHHHhhcCCCCccceEEEeeCCCCceeeeccccCcCCCCCCC-----------HHHHHHHHHHhhchhhhh
Q 022546          127 TTLDVVRAKTFYAGKVNVPVAEVNVPVIGGHAGVTILPLFSQATPKSNNLS-----------DEEIKALTKRTQDGGTEV  195 (295)
Q Consensus       127 t~ld~~R~~~~la~~l~v~~~~v~~~viG~hg~~~~vp~~s~~~v~~~~~~-----------~~~~~~i~~~v~~~~~~i  195 (295)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++.++.           ....+.+....+..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            789999999999999999999999999999999 89999999998763221           123457777888888888


Q ss_pred             hhhccCCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 022546          196 VEAKAGKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQ  272 (295)
Q Consensus       196 ~~~~~~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~  272 (295)
                      +..   ++++.|++|.++..++.+++.+.+   .+++++ +.+|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~~---k~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LDM---KGYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hhc---ccchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            774   478999999999999999998864   467776 678888  57999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 022546          273 GLESLKPELKASIEKGI  289 (295)
Q Consensus       273 ~l~~s~~~l~~~~~~~~  289 (295)
                      +|++|++.|++ +.+.+
T Consensus       155 ~l~~s~~~lk~-~~k~l  170 (172)
T d2ldxa2         155 LLKKSADTLWN-MQKNL  170 (172)
T ss_dssp             HHHHHHHHHHH-HTSCS
T ss_pred             HHHHHHHHHHH-HHHhc
Confidence            99999999984 44443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.8e-30  Score=206.37  Aligned_cols=121  Identities=62%  Similarity=0.997  Sum_probs=111.8

Q ss_pred             CCCcCeEEEEeCCC-chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 022546            4 DPLVSSLSLYDIAN-TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLC   82 (295)
Q Consensus         4 ~~~~~ei~L~D~~~-~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~   82 (295)
                      .++++||+|+|+++ ++|+++||+|+........+.++++ +++++|||+||+++|.|+++|++|++++.+|++++++++
T Consensus        24 ~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~  102 (145)
T d2cmda1          24 LPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLV  102 (145)
T ss_dssp             SCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHH
T ss_pred             CCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHH
Confidence            48899999999977 8899999999976666666666666 589999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           83 TAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        83 ~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +.|.+++|+++++++|||+|+|+++++++++.+|.||++|+||
T Consensus       103 ~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1         103 QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             HHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             HHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            9999999999999999999999999998888888899999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.96  E-value=2.8e-30  Score=206.67  Aligned_cols=118  Identities=31%  Similarity=0.424  Sum_probs=99.2

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +++++++||+|+|+++  ++|+++||+|+.. ......++  .| +++++|||+||+++|.++++|++|++++.+|++++
T Consensus        21 ~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~   97 (142)
T d1y6ja1          21 ALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIA   97 (142)
T ss_dssp             HHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCCC------CHHHHHHHHHHHH
T ss_pred             HhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee--Cc-HHHhCCCceEEEecccccCcCcchhHHhhHHHHHH
Confidence            4688999999999988  8999999999753 23445443  34 58999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      +++++.|++++|+|+++++|||+|+||+++   +|.|| ||++||||+
T Consensus        98 ~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~---~k~sg-~p~~rViG~  141 (142)
T d1y6ja1          98 KEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWSG-LPVGKVIGS  141 (142)
T ss_dssp             HHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEEC
T ss_pred             HHHHHHhhccCCCceEEEecChHHHHHHHH---HHHHC-CCccceecC
Confidence            999999999999999999999999999987   89999 999999997

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=2.5e-30  Score=206.53  Aligned_cols=118  Identities=29%  Similarity=0.401  Sum_probs=103.9

Q ss_pred             CCCCCCcCeEEEEeCCC----chhHHHhhhCCC-CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN----TPGVAADVSHIN-SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA   75 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~----~~~~~~Dl~~~~-~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~   75 (295)
                      |+++++++||+|+|++.    ++|+++||+|+. ++.+.+..++  + +++++|||+||+++|.|+++||+|++++..|+
T Consensus        20 l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~--~-~~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~   96 (142)
T d1o6za1          20 IALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG--G-YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNA   96 (142)
T ss_dssp             HHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC--C-GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeC--C-HHHhhhcCEEEEecccccccCCchhhHHHHHH
Confidence            35789999999999863    679999999953 2233344433  4 58899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +|++++++.|++++|+++++++|||+|+||+++   +|.+| ||++||||
T Consensus        97 ~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~---~k~sg-~~~~rViG  142 (142)
T d1o6za1          97 PIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL---YEAGD-RSREQVIG  142 (142)
T ss_dssp             HHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH---HHHSS-SCGGGEEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEecChHHHHHHHH---HHHHC-cCcccccC
Confidence            999999999999999999999999999999986   89999 99999998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.9e-30  Score=207.57  Aligned_cols=117  Identities=33%  Similarity=0.586  Sum_probs=105.3

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA   75 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~   75 (295)
                      +++++++||+|+|+++  ++|+++||+|+.    ..+++..   ++| +++++|||+||+++|.|+++|++|++++.+|+
T Consensus        20 ~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~---~~d-~~~~~~adiVvitag~~~~~g~~r~~l~~~n~   95 (142)
T d1ojua1          20 LLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNA   95 (142)
T ss_dssp             HHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHH
T ss_pred             HhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc---CCC-HHHhccccEEEEeccccCCCCCchHHHHHHhh
Confidence            4578999999999988  899999999974    2234443   346 58999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      ++++++++.|++++|+|+++++|||+|+||+++   +|.+| ||++||||+
T Consensus        96 ~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViG~  142 (142)
T d1ojua1          96 GIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGM  142 (142)
T ss_dssp             HHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSC-CCTTSEEEC
T ss_pred             HHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH---HHHHC-CChhcEecC
Confidence            999999999999999999999999999999986   89999 999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=4.3e-30  Score=205.25  Aligned_cols=118  Identities=34%  Similarity=0.580  Sum_probs=105.3

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +++++++||+|+|+++  ++|+++|++|+.. ..+....+  +| +++++|||+||+++|.++++|++|.+++.+|++++
T Consensus        20 ~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag~~~~~g~~r~dl~~~N~~I~   96 (140)
T d1a5za1          20 LMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVM   96 (140)
T ss_dssp             HHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEEecccccccchhccccccccccccccccC--Cc-HHHhcCCCEEEEecccccCCCcchhhhhccccchH
Confidence            4578899999999987  8999999999752 22334433  34 58899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      +++++.|+++||+||++++|||+|+||+++   +|.+| ||++||||+
T Consensus        97 ~~i~~~i~~~~p~aivivvtNPvd~~t~~~---~k~sg-~p~~rViGt  140 (140)
T d1a5za1          97 KEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGS  140 (140)
T ss_dssp             HHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEEC
T ss_pred             HHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHHC-cCccceeCc
Confidence            999999999999999999999999999987   89999 999999995

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.2e-30  Score=210.53  Aligned_cols=118  Identities=25%  Similarity=0.329  Sum_probs=106.1

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGI   77 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i   77 (295)
                      +++++++||+|+|+++  ++|+++||+|+...  ..+...+  .| +++++|||+||+++|.++++|++|++++.+|+++
T Consensus        26 ~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~d-~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i  102 (148)
T d1ldna1          26 MNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAI  102 (148)
T ss_dssp             HHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHH
T ss_pred             HhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE--CC-HHHhccceeEEEecccccccCcchhHHHHHHHHH
Confidence            4678999999999988  89999999997532  2344433  45 5899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           78 VKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        78 ~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      ++++++.|++++|+|+++++|||+|+||+++   +|++| ||++||||+
T Consensus       103 ~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~---~k~sg-~p~~rViG~  147 (148)
T d1ldna1         103 FRSIVESVMASGFQGLFLVATNPVDILTYAT---WKFSG-LPHERVIGS  147 (148)
T ss_dssp             HHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHT-CCGGGEEEC
T ss_pred             HHHHHHHHHhhCCCceEEEecCccHHHHHHH---HHHHC-cChhheecC
Confidence            9999999999999999999999999999987   89999 999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.96  E-value=3e-30  Score=209.82  Aligned_cols=118  Identities=23%  Similarity=0.398  Sum_probs=105.2

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      |+++++++||+|+|+++  ++|+++||+|+..  +.....  .+.| +++++|||+||+++|.++++|++|++++.+|++
T Consensus        39 l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~--~~~d-~~~~~~adiVVitAg~~~~~g~tR~~l~~~N~~  115 (160)
T d1i0za1          39 ILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV--ADKD-YSVTANSKIVVVTAGVRQQEGESRLNLVQRNVN  115 (160)
T ss_dssp             HHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEE--ECSS-GGGGTTCSEEEECCSCCCCTTCCGGGGHHHHHH
T ss_pred             HHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEE--eccc-hhhcccccEEEEecCCccccCcchHHHHHHHHH
Confidence            35789999999999987  8999999999753  222222  2345 588999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +++++++.|++++|+|+++++|||+|+||+++   ++.+| ||++||||
T Consensus       116 i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~---~k~sg-lp~~rViG  160 (160)
T d1i0za1         116 VFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT---WKLSG-LPKHRVIG  160 (160)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999987   89999 99999998

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.96  E-value=7.5e-29  Score=204.67  Aligned_cols=159  Identities=20%  Similarity=0.200  Sum_probs=123.5

Q ss_pred             hhhHHHHHHHHHhhcCCCCccceE-EEeeCCCCceeeeccccCcCCCCCCC------HHHHHHHHHHhhchhhhhhhhcc
Q 022546          128 TLDVVRAKTFYAGKVNVPVAEVNV-PVIGGHAGVTILPLFSQATPKSNNLS------DEEIKALTKRTQDGGTEVVEAKA  200 (295)
Q Consensus       128 ~ld~~R~~~~la~~l~v~~~~v~~-~viG~hg~~~~vp~~s~~~v~~~~~~------~~~~~~i~~~v~~~~~~i~~~~~  200 (295)
                      .||++|||++||+++|++|++|++ +|||+||+ +++|+||++++++.++.      ....+++.+.+++++.++...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            589999999999999999999976 78899999 99999999999764221      1123456666666777776654 


Q ss_pred             CCCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 022546          201 GKGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV--TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL  277 (295)
Q Consensus       201 ~kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s  277 (295)
                      +++++.++.+.++..+..++. +.++  .+++++ +++|+|  ++++|||+||++|++|++.+.++ +|+++|+++|++|
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~-~~~~--~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVL-GTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHH-CCTT--CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHh-CCCc--cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            444444444444444555554 4332  366776 779998  68999999999999999999988 8999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q 022546          278 KPELKASIEKGIQFA  292 (295)
Q Consensus       278 ~~~l~~~~~~~~~~~  292 (295)
                      +++|+++++...+.+
T Consensus       156 ~~~L~~e~~~v~~ll  170 (171)
T d1b8pa2         156 LNELLEEQNGVQHLL  170 (171)
T ss_dssp             HHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999988877664

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=1.5e-30  Score=209.07  Aligned_cols=118  Identities=20%  Similarity=0.246  Sum_probs=98.5

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC--CCeEEEeeCCCchhhhcCCCcEEEEcCCCCC----CCCCCHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS--PAQVEGYAGEEQLGKALEGSDVVIIPAGVPR----KPGMTRDDLFNI   73 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~--~~~v~~~~~t~d~~~al~daDiVvi~~g~~~----~~g~~r~~~~~~   73 (295)
                      +++++++||+|+|+++  ++|+++||+|+..  +.......  +| +++++|||+||+++|.++    ++|++|++++.+
T Consensus        21 ~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~--~d-~~~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~   97 (146)
T d1hyha1          21 IAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--ND-WAALADADVVISTLGNIKLQQDNPTGDRFAELKF   97 (146)
T ss_dssp             HHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SC-GGGGTTCSEEEECCSCGGGTC-------CTTHHH
T ss_pred             HhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec--cC-HHHhccccEEEEeccccccccccCCccHHHHHHH
Confidence            4568899999999988  7899999999752  22333333  35 588999999999999876    788999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           74 NAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        74 n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      |+++++++++.|++++|++|++++|||+|+||+++   +|.+| ||++||||+
T Consensus        98 N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViGt  146 (146)
T d1hyha1          98 TSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGT  146 (146)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH---HHHhC-CCccceeCc
Confidence            99999999999999999999999999999999987   89999 999999995

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.95  E-value=9.4e-29  Score=198.03  Aligned_cols=117  Identities=33%  Similarity=0.560  Sum_probs=105.0

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINA   75 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~   75 (295)
                      +++++++||+|+|+++  ++++++|++|..    ..+++..   ++| +++++|||+||+++|.|+++|++|.+++.+|+
T Consensus        20 ~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~---~~~-~~~~~dadvvvitag~~~~~g~~r~~l~~~N~   95 (142)
T d1guza1          20 AEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SND-YADTANSDIVIITAGLPRKPGMTREDLLMKNA   95 (142)
T ss_dssp             HHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHH
T ss_pred             HhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe---cCC-HHHhcCCeEEEEEEecCCCCCCchHHHHHHHH
Confidence            4678999999999988  789999999974    2334432   345 58999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           76 GIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        76 ~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      ++++++++.|.++||+||++++|||+|++|+++   +|.+| ||++||||+
T Consensus        96 ~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~---~~~sg-~p~~rviG~  142 (142)
T d1guza1          96 GIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGM  142 (142)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEE
T ss_pred             HHHHHHHHHhhccCCCeEEEEecCChHHHHHHH---HHHhC-CChHhEeeC
Confidence            999999999999999999999999999999987   89999 999999996

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.8e-29  Score=205.07  Aligned_cols=118  Identities=25%  Similarity=0.376  Sum_probs=105.2

Q ss_pred             CCCCCCcCeEEEEeCCC--chhHHHhhhCCCCC--CeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN--TPGVAADVSHINSP--AQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~~--~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      |+++++++||+|+|+++  ++|+++||+|+...  ......  +.| +++++|||+||+++|.++++|++|++++..|++
T Consensus        38 l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~--~~d-~~~~~~adivvitag~~~~~~~~R~dll~~N~~  114 (159)
T d2ldxa1          38 ILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF--GKD-YNVSANSKLVIITAGARMVSGQTRLDLLQRNVA  114 (159)
T ss_dssp             HHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE--ESS-GGGGTTEEEEEECCSCCCCTTTCSSCTTHHHHH
T ss_pred             HHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEe--ccc-hhhhccccEEEEecccccCCCCCHHHHHHHHHH
Confidence            45789999999999987  89999999998632  122222  245 588999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +++++++.|++++|+++++++|||+|+||+++   ++.+| ||++||||
T Consensus       115 i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~---~k~sg-~p~~rV~G  159 (159)
T d2ldxa1         115 IMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV---WKISG-FPVGRVIG  159 (159)
T ss_dssp             HHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH---HHHHC-SCTTTEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999987   89999 99999998

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=2.4e-28  Score=195.79  Aligned_cols=119  Identities=31%  Similarity=0.537  Sum_probs=102.2

Q ss_pred             CCCCCCcCeEEEEeCCC----chhHHHhhhCCC--CCCeEEEee-CCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHH
Q 022546            1 MKLDPLVSSLSLYDIAN----TPGVAADVSHIN--SPAQVEGYA-GEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNI   73 (295)
Q Consensus         1 l~~~~~~~ei~L~D~~~----~~~~~~Dl~~~~--~~~~v~~~~-~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~   73 (295)
                      |+++++++||+|+|+++    ++|+++||+|+.  ..+.++.+. +++| +++++|||+||+|+|.|+++|++|++++.+
T Consensus        20 l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVVitAG~~~~~g~sR~dl~~~   98 (145)
T d1hyea1          20 LAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVIITSGVPRKEGMSRMDLAKT   98 (145)
T ss_dssp             HHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEEECCSCCCCTTCCHHHHHHH
T ss_pred             HHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEEEecccccCCCCChhhhhhh
Confidence            35789999999999976    578999999963  223333322 2345 589999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           74 NAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        74 n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      |++|++++++.+.+++|++++ ++|||+|+|++++   +|.+| ||++||||
T Consensus        99 Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~---~k~sg-~p~~rViG  145 (145)
T d1hyea1          99 NAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA---LVDSK-FERNQVFG  145 (145)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH---HHHHC-CCTTSEEE
T ss_pred             hHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH---HHHHC-cCcccccC
Confidence            999999999999999999865 6899999999987   89999 99999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.95  E-value=5.2e-29  Score=200.10  Aligned_cols=118  Identities=25%  Similarity=0.421  Sum_probs=95.2

Q ss_pred             CCCCCcCeEEEEeCCC--chhHHHhhhCCCC-CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHH
Q 022546            2 KLDPLVSSLSLYDIAN--TPGVAADVSHINS-PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIV   78 (295)
Q Consensus         2 ~~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~-~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~   78 (295)
                      +++++++||+|+|+++  ++|+++||+|+.. .......+  .| +++++|||+||+++|.++++|++|++++.+|++++
T Consensus        25 ~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~--~d-~~~~~~adivvitag~~~~~g~~r~~l~~~N~~i~  101 (146)
T d1ez4a1          25 AQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITAGAPQKPGESRLDLVNKNLNIL  101 (146)
T ss_dssp             HHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECCCC----------CHHHHHHHH
T ss_pred             HhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee--cc-HHHhccccEEEEecccccCCCCCHHHHHHHHHHHH
Confidence            4678999999999988  8999999999753 22223333  35 47899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           79 KSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        79 ~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      +++++.|++++|+++++++|||+|+|++++   ++.+| ||++||||+
T Consensus       102 ~~~~~~i~~~~p~aivivvtNPvdv~t~~~---~k~sg-~p~~rViG~  145 (146)
T d1ez4a1         102 SSIVKPVVDSGFDGIFLVAANPVDILTYAT---WKFSG-FPKERVIGS  145 (146)
T ss_dssp             HHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             HHHHHHHhhcCCCcEEEEeCCccHHHHHHH---HHHHC-cCccceecC
Confidence            999999999999999999999999999887   89999 999999997

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=1.5e-28  Score=198.12  Aligned_cols=115  Identities=33%  Similarity=0.615  Sum_probs=101.2

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCC-----HHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMT-----RDDLF   71 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~-----r~~~~   71 (295)
                      +++ ++||+|+|+++  ++|+++|++|+..    +..+..   +++ +++++|||+||+++|.++++|++     |++++
T Consensus        24 ~~~-l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~---~~~-~~~~~~advvvitag~~~~~g~~~~~~~R~~l~   98 (150)
T d1t2da1          24 QKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNT-YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLL   98 (150)
T ss_dssp             HTT-CCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECC-GGGGTTCSEEEECCSCSSCTTCCSTTCCGGGGH
T ss_pred             hCC-CCeEEEEeccCCcceeeecchhhhccccCCCcEEEe---ccc-ccccCCCcEEEEecccccCCCCCccccchhHHH
Confidence            455 47999999988  8999999999742    223332   234 68999999999999999999876     99999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        72 ~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      ..|+++++++++.|+++||+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        99 ~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~~~sg-~p~~rViG~  149 (150)
T d1t2da1          99 PLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHSG-VPKNKIIGL  149 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH---HHHHC-CCchheecc
Confidence            9999999999999999999999999999999999987   89999 999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.94  E-value=3.6e-27  Score=188.54  Aligned_cols=114  Identities=30%  Similarity=0.581  Sum_probs=92.5

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCCC----CCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHINS----PAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAG   76 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~~----~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~   76 (295)
                      ++++ .|++|+|+++  +.|+++|++|+..    ..++..   ++| +++++|||+||+++|.++++|++|.+++..|++
T Consensus        22 ~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d-~~~~~~advvvitag~~~~~~~~r~dl~~~N~~   96 (142)
T d1uxja1          22 AKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNN-YADTANSDVIVVTSGAPRKPGMSREDLIKVNAD   96 (142)
T ss_dssp             HHTC-SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEEECCSCC---------CHHHHHH
T ss_pred             hCCc-ceEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCc-HHHhcCCCEEEEeeeccCCcCcchhHHHhHHHH
Confidence            4555 4799999988  7999999999852    234443   356 478999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           77 IVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        77 i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      +++++++.|.+++|+|+++++|||+|+||+++   ++.+| ||++||||
T Consensus        97 i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~---~~~sg-lp~~rViG  141 (142)
T d1uxja1          97 ITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIG  141 (142)
T ss_dssp             HHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             HHHHHHHHHhccCCCceEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999987   89999 99999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.93  E-value=2.3e-27  Score=192.20  Aligned_cols=116  Identities=31%  Similarity=0.642  Sum_probs=102.1

Q ss_pred             CCCCcCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCC-----CHHHHH
Q 022546            3 LDPLVSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGM-----TRDDLF   71 (295)
Q Consensus         3 ~~~~~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~-----~r~~~~   71 (295)
                      ++++ .||+|+|+++  ++|+++|++|+.    ....+..   +++++++++|||+||+++|.++++|+     +|++++
T Consensus        28 ~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~  103 (154)
T d1pzga1          28 LREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLL  103 (154)
T ss_dssp             HHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGH
T ss_pred             hCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCchhhhhcCCCeEEEecccccCCCCCCcccchhhhh
Confidence            4454 5899999988  899999999963    2223332   35667899999999999999999985     899999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           72 NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        72 ~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      ..|+++++++++.|+++||+|+++++|||+|+||+++   ++.+| ||++||||+
T Consensus       104 ~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~---~~~sg-~p~~rViG~  154 (154)
T d1pzga1         104 PFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICGM  154 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             hhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHhC-cChhcEecC
Confidence            9999999999999999999999999999999999987   89999 999999996

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.92  E-value=1.6e-25  Score=184.74  Aligned_cols=115  Identities=23%  Similarity=0.324  Sum_probs=100.3

Q ss_pred             CeEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 022546            8 SSLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCT   83 (295)
Q Consensus         8 ~ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~i~~   83 (295)
                      -+|+|+|++.    ++|.++|++|++++. ++....+++.+++++|||+||+++|.|++|||+|.|++.+|++|++++++
T Consensus        56 i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~  134 (175)
T d7mdha1          56 IALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGK  134 (175)
T ss_dssp             EEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCccccchhcchhhhhccccccc-ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3899999976    589999999998643 33333334568999999999999999999999999999999999999999


Q ss_pred             HHHhhCC-CeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeec
Q 022546           84 AIANYCP-HALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGV  126 (295)
Q Consensus        84 ~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~  126 (295)
                      .|.+|+| +++|+++|||+|++|+++   +|++.++|++||+|+
T Consensus       135 ~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         135 ALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             HHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             HHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            9999986 899999999999999987   787545999999986

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=7.7e-25  Score=177.35  Aligned_cols=117  Identities=26%  Similarity=0.366  Sum_probs=98.0

Q ss_pred             CCcCeEEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHH
Q 022546            5 PLVSSLSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS   80 (295)
Q Consensus         5 ~~~~ei~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~~n~~i~~~   80 (295)
                      ....+|+|+|++.    ++++.+|+.|+..+. ......+.+.+++++|||+||+++|.|+++||+|.+++.+|++++++
T Consensus        32 ~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~  110 (154)
T d5mdha1          32 DQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKC  110 (154)
T ss_dssp             TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHH
T ss_pred             CCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHH
Confidence            3456899999977    566677778876432 22222234557999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC-eEEEEecCCccchHHHHHHHHHHh-CCCCCCCeeec
Q 022546           81 LCTAIANYCPH-ALVNMISNPVNSTVPIAAEVFKKA-GTYDEKKLFGV  126 (295)
Q Consensus        81 i~~~i~~~~p~-a~viv~tNP~d~~t~~~~~~~k~s-g~~~~~kviG~  126 (295)
                      +++.|.+++|+ +++|++|||+|+||+++   +|++ | ||++||+|+
T Consensus       111 ~~~~i~k~a~~~~~iivvsNPvD~mt~v~---~k~s~g-~P~~~v~~m  154 (154)
T d5mdha1         111 QGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPS-IPKENFSCL  154 (154)
T ss_dssp             HHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTT-SCGGGEEEC
T ss_pred             HHHHHHhhCCCceEEEEecCcHHHHHHHH---HHHcCC-CCHHHEeCC
Confidence            99999999975 57889999999999987   8999 6 999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.8e-24  Score=173.97  Aligned_cols=119  Identities=24%  Similarity=0.448  Sum_probs=98.6

Q ss_pred             CCCCCcCe-----EEEEeCCC----chhHHHhhhCCCCCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHHH
Q 022546            2 KLDPLVSS-----LSLYDIAN----TPGVAADVSHINSPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFN   72 (295)
Q Consensus         2 ~~~~~~~e-----i~L~D~~~----~~~~~~Dl~~~~~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~~   72 (295)
                      ++.+++++     +.|+|.+.    +++.++|+.|+..+ .++....+.+.+++++|||+||+++|.+++||++|++++.
T Consensus        25 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~  103 (154)
T d1y7ta1          25 AAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQ  103 (154)
T ss_dssp             HTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHH
T ss_pred             HhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHH
Confidence            45666664     56666654    68889999998753 3333333344579999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCC-CeEEEEecCCccchHHHHHHHHHH-hCCCCCCCeee
Q 022546           73 INAGIVKSLCTAIANYCP-HALVNMISNPVNSTVPIAAEVFKK-AGTYDEKKLFG  125 (295)
Q Consensus        73 ~n~~i~~~i~~~i~~~~p-~a~viv~tNP~d~~t~~~~~~~k~-sg~~~~~kviG  125 (295)
                      +|+++++++++.|.+|+| +++++++|||+|+||+++   +|+ +| ||++|||+
T Consensus       104 ~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg-~p~~rvia  154 (154)
T d1y7ta1         104 VNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPG-LNPRNFTA  154 (154)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTT-SCGGGEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCC-CcHHhccC
Confidence            999999999999999985 799999999999999987   787 56 99999985

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.89  E-value=1.9e-24  Score=177.64  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=93.9

Q ss_pred             cCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHH-----------
Q 022546            7 VSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDD-----------   69 (295)
Q Consensus         7 ~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~-----------   69 (295)
                      .+||+|+|+++  +.+.++|+.|..    ....++... ++|++++++|||+||++++.++++|++|++           
T Consensus        30 ~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~  108 (169)
T d1s6ya1          30 VGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQ  108 (169)
T ss_dssp             EEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCC
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceec
Confidence            47999999988  679999997742    122333332 356789999999999999988776665554           


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecc
Q 022546           70 ---------LFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT  127 (295)
Q Consensus        70 ---------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t  127 (295)
                               ++.+|+++++++++.|+++|||||++++|||+|+||+++   +|+   +|++||||+|
T Consensus       109 ~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~---~k~---~p~~kviGlC  169 (169)
T d1s6ya1         109 ETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV---LRY---TKQEKVVGLC  169 (169)
T ss_dssp             SSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHH---CCCCCEEECC
T ss_pred             cccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH---HHH---CCCCCEEeeC
Confidence                     468999999999999999999999999999999999987   676   5788999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=7e-23  Score=167.39  Aligned_cols=110  Identities=17%  Similarity=0.199  Sum_probs=92.3

Q ss_pred             cCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHHHH---------
Q 022546            7 VSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLF---------   71 (295)
Q Consensus         7 ~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~~~---------   71 (295)
                      .+||+|+|+++  +++.+.|+.+..    .+.++..   ++|++++++|||+||+++|.++++|++|++++         
T Consensus        32 ~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~  108 (167)
T d1u8xx1          32 IRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA---TTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ  108 (167)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE---ESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCC
T ss_pred             CCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe---cCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceee
Confidence            47999999998  676677777642    2334443   35778999999999999999998888888775         


Q ss_pred             -----------HHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           72 -----------NINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        72 -----------~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                                 .+|+++++++++.|+++||+||++++|||+|++|+++   +|+   +|++|||.
T Consensus       109 ~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~---~k~---~P~~rVI~  167 (167)
T d1u8xx1         109 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT---RRL---RPNSKILN  167 (167)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH---HHH---STTCCEEE
T ss_pred             ccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH---HHH---CCcccccC
Confidence                       5779999999999999999999999999999999987   676   68899984

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=8.1e-23  Score=166.63  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=88.7

Q ss_pred             CCcCeEEEEeCCC-chhHHHhhhCCC--CCCeEEEeeCCCchhhhcCCCcEEEEcCCCCCCCCCCHHH------------
Q 022546            5 PLVSSLSLYDIAN-TPGVAADVSHIN--SPAQVEGYAGEEQLGKALEGSDVVIIPAGVPRKPGMTRDD------------   69 (295)
Q Consensus         5 ~~~~ei~L~D~~~-~~~~~~Dl~~~~--~~~~v~~~~~t~d~~~al~daDiVvi~~g~~~~~g~~r~~------------   69 (295)
                      ..++||+|+|+++ ..+.+.|+.|..  ....+..   +++.+++++|||+||+++|.+++++++|++            
T Consensus        27 ~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t~~~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~  103 (162)
T d1up7a1          27 VRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQE  103 (162)
T ss_dssp             SCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCS
T ss_pred             cCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---ecCcccccCCCCEEEEecccCCCCCcchHhhhhhhcCeeeee
Confidence            4578999999988 556678887753  2234443   235589999999999999988777666554            


Q ss_pred             --------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeeecc
Q 022546           70 --------LFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVT  127 (295)
Q Consensus        70 --------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG~t  127 (295)
                              ...|+++.+.++.+ ++++||+||++++|||+|++|+++   +|+   +|++||+|+|
T Consensus       104 ~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~---~~~---~p~~rviGlC  162 (162)
T d1up7a1         104 TTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV---RNY---LEYEKFIGLC  162 (162)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH---HHT---TCCSSEEECC
T ss_pred             ccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH---HHh---CCCCCEEeeC
Confidence                    45677788887765 778899999999999999999986   676   4678999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=8.8e-21  Score=155.67  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=88.9

Q ss_pred             cCeEEEEeCCC--chhHHHhhhCCC----CCCeEEEeeCCCchhhhcCCCcEEEEcCCC------------------CCC
Q 022546            7 VSSLSLYDIAN--TPGVAADVSHIN----SPAQVEGYAGEEQLGKALEGSDVVIIPAGV------------------PRK   62 (295)
Q Consensus         7 ~~ei~L~D~~~--~~~~~~Dl~~~~----~~~~v~~~~~t~d~~~al~daDiVvi~~g~------------------~~~   62 (295)
                      .+||+|+|+++  +++++.|+.|..    .+.++..   ++|++++++|||+|+++.+.                  +++
T Consensus        31 ~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~---~td~~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~  107 (171)
T d1obba1          31 GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK---TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRG  107 (171)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE---eCChhhcccCCCeEeeecccccccceeeehhcchhhhhccC
Confidence            46999999997  788899998852    2334443   46789999999999997654                  345


Q ss_pred             CCCCHHH--------HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccchHHHHHHHHHHhCCCCCCCeee
Q 022546           63 PGMTRDD--------LFNINAGIVKSLCTAIANYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFG  125 (295)
Q Consensus        63 ~g~~r~~--------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~d~~t~~~~~~~k~sg~~~~~kviG  125 (295)
                      ++++|.+        .+.+|+++++++++.|+++||+||+|++|||+|+||+++   +|++| +   |+||
T Consensus       108 ~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t~~~---~k~~~-~---k~iG  171 (171)
T d1obba1         108 IDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV---TRTVP-I---KAVG  171 (171)
T ss_dssp             TTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH---HHHSC-S---EEEE
T ss_pred             CCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHHHHH---HHhcC-C---CccC
Confidence            5555544        467999999999999999999999999999999999987   78877 4   8887

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=5.1e-07  Score=76.95  Aligned_cols=73  Identities=11%  Similarity=0.039  Sum_probs=57.3

Q ss_pred             CCcchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 022546          202 KGSATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESL  277 (295)
Q Consensus       202 kg~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s  277 (295)
                      +++..|+  ..++++|+||.+|.+   ..+.++ .++|.+   |++.++++||+|+++|+.++ ..++|++...+++..-
T Consensus       127 ~~~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~  200 (253)
T d1up7a2         127 RGGSMYS--TAAAHLIRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTL-SQGKGDHFALSFIHAV  200 (253)
T ss_dssp             STTTTHH--HHHHHHHHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEB-CCCCCCHHHHHHHHHH
T ss_pred             ccCcchH--HHHHHHHHHHHcCCC---cEEEEeCCCcCcCCCCChhhheEEEEEecCCccccc-ccCCCcHHHHHHHHHH
Confidence            3455566  889999999999975   355555 567765   78999999999999999997 5569999988877654


Q ss_pred             HHH
Q 022546          278 KPE  280 (295)
Q Consensus       278 ~~~  280 (295)
                      ...
T Consensus       201 ~~~  203 (253)
T d1up7a2         201 KMY  203 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.48  E-value=2.2e-06  Score=73.87  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 022546          211 YAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKPELKASIE  286 (295)
Q Consensus       211 ~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~~~  286 (295)
                      ..++++|+||.+|.+   ..+.++ .++|.+   |+|.++++||+|+++|+.++ ..++|++..++++..-...-+-.++
T Consensus       153 e~av~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~k~~e~Ltve  228 (276)
T d1u8xx2         153 SYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPI-TVGTIPQFQKGLMEQQVSVEKLTVE  228 (276)
T ss_dssp             HHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC---cEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEee-ecCCCcHHHHHHHHHHHHHHHHHHH
Confidence            778999999999975   345555 567765   78999999999999999996 5569999998888765444333344


Q ss_pred             HH
Q 022546          287 KG  288 (295)
Q Consensus       287 ~~  288 (295)
                      .+
T Consensus       229 Aa  230 (276)
T d1u8xx2         229 AW  230 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.89  E-value=4.4e-05  Score=65.17  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             cchhhHHHHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 022546          204 SATLSMAYAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQGLESLKP  279 (295)
Q Consensus       204 ~~~~s~a~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~~l~~s~~  279 (295)
                      +..++  ..++++|.||.+|.+   ..+.++ .++|.+   |+|+++++||+|+++|+.++ ..++|++..++++.....
T Consensus       141 ~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~~~  214 (270)
T d1s6ya2         141 GAYYS--DAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPI-AVGDLPVAVRGLVQQIKS  214 (270)
T ss_dssp             SCCHH--HHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHHHHHHH
T ss_pred             CcchH--HHHHHHHHHHhcCCC---eEEEEECCCCCcCCCCCccceEEEEEEEECCceEee-ecCCCcHHHHHHHHHHHH
Confidence            34455  889999999999975   355555 567765   78999999999999999997 456999999988877654


Q ss_pred             HHHHHHHHH
Q 022546          280 ELKASIEKG  288 (295)
Q Consensus       280 ~l~~~~~~~  288 (295)
                      .-+-.++.+
T Consensus       215 ~e~L~veAa  223 (270)
T d1s6ya2         215 FERVAAEAA  223 (270)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444344433

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.00025  Score=60.53  Aligned_cols=53  Identities=11%  Similarity=-0.053  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCC
Q 022546          211 YAGAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLS  267 (295)
Q Consensus       211 ~a~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~  267 (295)
                      ..++++|.||.+|++   ..+.++ .++|.+   |+|.+++|||+|+++|+.++ ..+++.
T Consensus       153 e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~-~vg~~~  209 (278)
T d1vjta2         153 EQHIPFINAIANNKR---VRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHRE-KVEPDL  209 (278)
T ss_dssp             CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEEC-CCCSCC
T ss_pred             HHHHHHHHHHhCCCC---eEEEEECCCCCcCCCCCchhheEeEEEEeCCceeee-ecCCCC
Confidence            677899999999975   355555 568875   78999999999999999996 444443

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.001  Score=57.39  Aligned_cols=61  Identities=18%  Similarity=0.054  Sum_probs=46.9

Q ss_pred             HHHHHHHHHcCcCCCCceeEEE-EeeCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHH-HHHH
Q 022546          213 GAVFADACLMGLNGVPDIVECT-FVQSSV---TELPFFASKVRLGKNGADEVLGLGPLSDYEKQ-GLES  276 (295)
Q Consensus       213 ~~~~i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~v~~~~~L~~~E~~-~l~~  276 (295)
                      ++++|.||.+|++   .++.++ .++|.+   |+|.+++|||+|+++|+.++---++|++.-.. +++.
T Consensus       184 a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~~  249 (308)
T d1obba2         184 HIPFIDALLNDNK---ARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRP  249 (308)
T ss_dssp             HHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHH
T ss_pred             HHHHHHHHHcCCC---eEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHHH
Confidence            7899999999975   355555 567775   78999999999999999997421478887644 4443