Citrus Sinensis ID: 022573

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ
cccccccccEEEEEccccHHHHHHHHHHHHccccEEEEcccHHHHHccHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHcccccccccccEEEEEcccccccccccccccccccccEEEEcccEEEEcccccccccccccccccccccccHHHHcccccccEEEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHcc
HHHHHccccEEEEEccccHHHHHHHHHHHHcccEEEEEEEHHHHHccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHccccccEEEEEEEEEcEHHHcEcccHHHHcEEEEEcEEEEEEcEcccccEcccccccHHHcccEccHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHcccEcHHHHHHHHHHHHHHHHcccccEEEEEEcEEcHHHHHHHHHHHccc
MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYyltgtvvgphpcpiMVREFQSIIGKETRKQAMekwggkpdVLLACVGsgsnalglfhefindedvRLIGVEAagfgldsgkhaatlakgevGVYHGAMSYllqdeegqilgthsvgvgleypgvgpeisflrdtgraefytaTDQEAVQAYQRLCRLEGIFPALEASHALAFLEKlcptlpngakvvvncsgggdkdvdTVVNYRYNQ
MIAKRMGRKSIVAatgagqhgVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVncsgggdkdvdtVVNYRYNQ
MIAKRMGRKSIVAATGAGQHGVataaacaklaldctVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ
**********IVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR***
MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR***
MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ
MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRYNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
O50046466 Tryptophan synthase beta N/A no 0.986 0.624 0.687 1e-123
P25269475 Tryptophan synthase beta no no 0.986 0.612 0.663 1e-120
P14671470 Tryptophan synthase beta no no 0.986 0.619 0.659 1e-119
P43283389 Tryptophan synthase beta N/A no 0.986 0.748 0.653 1e-118
P43284443 Tryptophan synthase beta N/A no 0.986 0.656 0.639 1e-116
Q3MBV3413 Tryptophan synthase beta yes no 1.0 0.714 0.600 1e-112
Q8YQM6413 Tryptophan synthase beta yes no 1.0 0.714 0.604 1e-112
Q59992412 Tryptophan synthase beta N/A no 0.986 0.706 0.619 1e-110
Q118P8409 Tryptophan synthase beta yes no 0.976 0.704 0.621 1e-110
Q8DG49410 Tryptophan synthase beta yes no 0.986 0.709 0.625 1e-110
>sp|O50046|TRPB_CAMAC Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1 Back     alignment and function desciption
 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 248/294 (84%), Gaps = 3/294 (1%)

Query: 1   MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
           ++AKR+G+K I+A TGAGQHGVATA  CA+  L C ++MG  DME+Q+  V  M+LLGA+
Sbjct: 170 LLAKRLGKKRIIAETGAGQHGVATATVCARFGLQCVIYMGAQDMERQALNVFRMRLLGAE 229

Query: 61  VKAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
           V+AV       K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVREF ++IGKETRKQ
Sbjct: 230 VRAVHSGTATLKDATSEAIRDWVTNVESTHYILGSVAGPHPYPMMVREFHAVIGKETRKQ 289

Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
           A+EKWGGKPDVL+ACVG GSNA+GLFHEF++D+DVR+IGVEAAGFGLDSGKHAATL KGE
Sbjct: 290 ALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGE 349

Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
           VGV HGAMSYLLQD++GQI+  HS+  GL+YPGVGPE SFL+D GRAE+Y  TD+EA++A
Sbjct: 350 VGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEA 409

Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
           ++RL RLEGI PALE SHALAFLEKLCPTLPNG KVV+NCSG GDKDV T + +
Sbjct: 410 FKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKH 463
The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
Camptotheca acuminata (taxid: 16922)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0
>sp|P25269|TRBP2_ARATH Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2 Back     alignment and function description
>sp|P14671|TRPB1_ARATH Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|P43283|TRPB1_MAIZE Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1 Back     alignment and function description
>sp|P43284|TRPB2_MAIZE Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1 Back     alignment and function description
>sp|Q3MBV3|TRPB_ANAVT Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8YQM6|TRPB2_NOSS1 Tryptophan synthase beta chain 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpB2 PE=3 SV=1 Back     alignment and function description
>sp|Q59992|TRPB_SYNY3 Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q118P8|TRPB_TRIEI Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1 Back     alignment and function description
>sp|Q8DG49|TRPB_THEEB Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
255554963 463 tryptophan synthase beta chain, putative 0.989 0.630 0.825 1e-142
449488466 1563 PREDICTED: tryptophan synthase beta chai 0.986 0.186 0.821 1e-142
449454865 455 PREDICTED: tryptophan synthase beta chai 0.989 0.641 0.821 1e-141
225444361 477 PREDICTED: tryptophan synthase beta chai 0.993 0.614 0.816 1e-141
302144077 407 unnamed protein product [Vitis vinifera] 0.993 0.719 0.816 1e-140
118489500 461 unknown [Populus trichocarpa x Populus d 0.989 0.633 0.801 1e-139
224116082393 predicted protein [Populus trichocarpa] 0.989 0.743 0.801 1e-138
42573495 465 tryptophan synthase beta chain [Arabidop 0.983 0.623 0.789 1e-133
26452400 465 unknown protein [Arabidopsis thaliana] g 0.983 0.623 0.789 1e-133
297843992 465 hypothetical protein ARALYDRAFT_471294 [ 0.983 0.623 0.772 1e-131
>gi|255554963|ref|XP_002518519.1| tryptophan synthase beta chain, putative [Ricinus communis] gi|223542364|gb|EEF43906.1| tryptophan synthase beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/292 (82%), Positives = 269/292 (92%)

Query: 1   MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
           MIAKRMG +++VAATGAGQHGVATAAACAKL+L CTVFMGT+DME+QSS VLLMKLLGA+
Sbjct: 169 MIAKRMGMETVVAATGAGQHGVATAAACAKLSLQCTVFMGTSDMERQSSNVLLMKLLGAE 228

Query: 61  VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAME 120
           VKAV G FK+ASSEAIR WVGNL+ SYYL GTVVGPHP P MVREFQS+IGKETR+QAME
Sbjct: 229 VKAVAGNFKDASSEAIREWVGNLQTSYYLAGTVVGPHPSPSMVREFQSVIGKETRRQAME 288

Query: 121 KWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
           KWGGKPDVL+ACVGSGSNALGLF+EFI DEDVRLIGVEAAGFGL+SGKHAATLAKGEVGV
Sbjct: 289 KWGGKPDVLVACVGSGSNALGLFNEFIGDEDVRLIGVEAAGFGLNSGKHAATLAKGEVGV 348

Query: 181 YHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240
           YHGAMSYLLQDEEGQI+G +S+GVGLEYPGV PE+SFL++  RAEFY+ATD+EA+ AYQR
Sbjct: 349 YHGAMSYLLQDEEGQIIGPYSIGVGLEYPGVSPELSFLKEIERAEFYSATDEEAINAYQR 408

Query: 241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 292
           LC+LEGI PALEASHALAFLEKLCP L NG KV+V+CSG GDKD  TV+NY+
Sbjct: 409 LCKLEGIIPALEASHALAFLEKLCPNLSNGTKVIVSCSGRGDKDAATVLNYK 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449488466|ref|XP_004158047.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449454865|ref|XP_004145174.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] gi|449473775|ref|XP_004153979.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225444361|ref|XP_002264829.1| PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144077|emb|CBI23182.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118489500|gb|ABK96552.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224116082|ref|XP_002317204.1| predicted protein [Populus trichocarpa] gi|222860269|gb|EEE97816.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42573495|ref|NP_974844.1| tryptophan synthase beta chain [Arabidopsis thaliana] gi|332006400|gb|AED93783.1| tryptophan synthase beta chain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452400|dbj|BAC43285.1| unknown protein [Arabidopsis thaliana] gi|28951055|gb|AAO63451.1| At5g28237 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843992|ref|XP_002889877.1| hypothetical protein ARALYDRAFT_471294 [Arabidopsis lyrata subsp. lyrata] gi|297335719|gb|EFH66136.1| hypothetical protein ARALYDRAFT_471294 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:1006230667465 AT5G28237 "AT5G28237" [Arabido 0.979 0.621 0.750 7.1e-116
TAIR|locus:2005543475 TSB2 "tryptophan synthase beta 0.986 0.612 0.639 1.1e-103
TAIR|locus:2160190470 TSB1 "tryptophan synthase beta 0.986 0.619 0.636 6e-103
TIGR_CMR|DET_1487399 DET_1487 "tryptophan synthase, 0.976 0.721 0.515 4.5e-82
TIGR_CMR|CHY_1582402 CHY_1582 "tryptophan synthase, 0.972 0.713 0.515 2.3e-78
TIGR_CMR|BA_1253397 BA_1253 "tryptophan synthase, 0.986 0.732 0.5 7.1e-77
UNIPROTKB|P66984422 trpB "Tryptophan synthase beta 0.986 0.689 0.493 1.3e-75
TIGR_CMR|CJE_0397392 CJE_0397 "tryptophan synthase, 0.986 0.742 0.481 1.5e-74
CGD|CAL0004378702 TRP5 [Candida albicans (taxid: 0.976 0.410 0.493 8.4e-74
UNIPROTKB|Q59KP3702 TRP5 "Likely tryptophan synthe 0.976 0.410 0.493 8.4e-74
TAIR|locus:1006230667 AT5G28237 "AT5G28237" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
 Identities = 217/289 (75%), Positives = 249/289 (86%)

Query:     1 MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
             MI++R+G   +VAATGAGQHGV              VFMG AD+EKQS  VL MKLLGAQ
Sbjct:   168 MISRRLGCSRVVAATGAGQHGVATAAACAKLSLECTVFMGAADIEKQSFNVLSMKLLGAQ 227

Query:    61 VKAVDGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAME 120
             V +V+G FK+ASSEAIRNWV NL  +YYL+GTVVGPHPCPI+VREFQS+IGKETR+QA +
Sbjct:   228 VISVEGTFKDASSEAIRNWVENLYTTYYLSGTVVGPHPCPIIVREFQSVIGKETRRQAKQ 287

Query:   121 KWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGV 180
              WGGKPDVL+ACVGSGSNALGLFHEF+ DEDVRL+GVEAAG GLDSGKH+ATLA G+VGV
Sbjct:   288 LWGGKPDVLVACVGSGSNALGLFHEFVGDEDVRLVGVEAAGLGLDSGKHSATLAFGDVGV 347

Query:   181 YHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQR 240
             YHG+MSYLLQD++GQIL  HSVGVGLEYPGVGPEISF+++TGRAEFYTATD+EA+QA  R
Sbjct:   348 YHGSMSYLLQDDQGQILKPHSVGVGLEYPGVGPEISFMKETGRAEFYTATDEEAIQACMR 407

Query:   241 LCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVV 289
             L RLEGI PALEASHALAFL+KL PTL +GAKVVVNCSG GDKD+DT++
Sbjct:   408 LSRLEGIIPALEASHALAFLDKLVPTLRDGAKVVVNCSGRGDKDLDTLI 456
GO:0000162 "tryptophan biosynthetic process" evidence=ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0004834 "tryptophan synthase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006568 "tryptophan metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
TAIR|locus:2005543 TSB2 "tryptophan synthase beta-subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160190 TSB1 "tryptophan synthase beta-subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1487 DET_1487 "tryptophan synthase, beta subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1582 CHY_1582 "tryptophan synthase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1253 BA_1253 "tryptophan synthase, beta subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P66984 trpB "Tryptophan synthase beta chain" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0397 CJE_0397 "tryptophan synthase, beta subunit" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
CGD|CAL0004378 TRP5 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59KP3 TRP5 "Likely tryptophan synthetase alpha chain" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8YQM6TRPB2_NOSS14, ., 2, ., 1, ., 2, 00.60401.00.7142yesno
Q0I6V1TRPB_SYNS34, ., 2, ., 1, ., 2, 00.58721.00.7057yesno
C1DH66TRPB_AZOVD4, ., 2, ., 1, ., 2, 00.54420.98640.7167yesno
B1J4B1TRPB_PSEPW4, ., 2, ., 1, ., 2, 00.55100.98640.7185yesno
A5N7P0TRPB_CLOK54, ., 2, ., 1, ., 2, 00.56010.97620.7272yesno
Q3AW11TRPB_SYNS94, ., 2, ., 1, ., 2, 00.56350.97620.6889yesno
A5GP60TRPB_SYNPW4, ., 2, ., 1, ., 2, 00.58760.97620.6923yesno
Q8DG49TRPB_THEEB4, ., 2, ., 1, ., 2, 00.62580.98640.7097yesno
A2BNV9TRPB_PROMS4, ., 2, ., 1, ., 2, 00.57670.98300.7004yesno
A9BD24TRPB_PROM44, ., 2, ., 1, ., 2, 00.57040.97620.6923yesno
Q7TUL2TRPB_PROMM4, ., 2, ., 1, ., 2, 00.57041.00.6766yesno
B0K8T6TRPB_THEP34, ., 2, ., 1, ., 2, 00.54630.97620.7365yesno
Q7TUH0TRPB_PROMP4, ., 2, ., 1, ., 2, 00.56650.98300.7004yesno
Q31D17TRPB_PROM94, ., 2, ., 1, ., 2, 00.58020.98300.7004yesno
Q7NGX9TRPB_GLOVI4, ., 2, ., 1, ., 2, 00.56700.97620.6956yesno
Q2JLD7TRPB_SYNJB4, ., 2, ., 1, ., 2, 00.59270.98640.6847yesno
Q3MBV3TRPB_ANAVT4, ., 2, ., 1, ., 2, 00.60061.00.7142yesno
Q8XXY0TRPB_RALSO4, ., 2, ., 1, ., 2, 00.54290.97620.7146yesno
Q8R9M9TRPB_THETN4, ., 2, ., 1, ., 2, 00.57040.97620.7365yesno
Q4KKP4TRPB_PSEF54, ., 2, ., 1, ., 2, 00.54420.98640.7167yesno
Q9V1G8TRPB1_PYRAB4, ., 2, ., 1, ., 2, 00.54260.98300.7474yesno
A7HPD3TRPB_PARL14, ., 2, ., 1, ., 2, 00.54760.98640.7185yesno
Q7VE26TRPB_PROMA4, ., 2, ., 1, ., 2, 00.59450.97620.6923yesno
Q3AGY2TRPB_SYNSC4, ., 2, ., 1, ., 2, 00.57380.97620.6889yesno
Q3KK59TRPB_PSEPF4, ., 2, ., 1, ., 2, 00.54080.98640.7097yesno
B9E151TRPB_CLOK14, ., 2, ., 1, ., 2, 00.56010.97620.7272yesno
P07345TRPB_PSEAE4, ., 2, ., 1, ., 2, 00.55100.98640.7238yesno
A2BUE1TRPB_PROM54, ., 2, ., 1, ., 2, 00.56650.98300.7004yesno
A3PAN2TRPB_PROM04, ., 2, ., 1, ., 2, 00.57670.98300.7004yesno
Q604P3TRPB_METCA4, ., 2, ., 1, ., 2, 00.53600.97620.7111yesno
A2BZZ2TRPB_PROM14, ., 2, ., 1, ., 2, 00.57040.97620.6906yesno
A8G2H0TRPB_PROM24, ., 2, ., 1, ., 2, 00.57670.98300.7004yesno
Q7TTS6TRPB_SYNPX4, ., 2, ., 1, ., 2, 00.57380.97620.6889yesno
A6TM76TRPB_ALKMQ4, ., 2, ., 1, ., 2, 00.53600.97620.72yesno
Q118P8TRPB_TRIEI4, ., 2, ., 1, ., 2, 00.62190.97620.7041yesno
B0K2T9TRPB_THEPX4, ., 2, ., 1, ., 2, 00.54980.97620.7365yesno
A2SHS4TRPB_METPP4, ., 2, ., 1, ., 2, 00.55630.98300.7038yesno
B7J4S9TRPB_ACIF24, ., 2, ., 1, ., 2, 00.55670.97620.7218yesno
Q46HK9TRPB_PROMT4, ., 2, ., 1, ., 2, 00.56700.97620.6906yesno
B5EK18TRPB_ACIF54, ., 2, ., 1, ., 2, 00.55670.97620.7218yesno
Q0AGX5TRPB_NITEC4, ., 2, ., 1, ., 2, 00.55670.97620.7218yesno
Q82WI2TRPB_NITEU4, ., 2, ., 1, ., 2, 00.55670.97620.7254yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.200.914
3rd Layer4.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006903001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (407 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029073001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (396 aa)
•••• •• 0.998
GSVIVG00023836001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (316 aa)
••••••• 0.994
GSVIVG00016051001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (389 aa)
• •• •• 0.977
GSVIVG00029306001
RecName- Full=N-(5'-phosphoribosyl)anthranilate isomerase; EC=5.3.1.24; (262 aa)
•••   • 0.977
GSVIVG00020704001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (430 aa)
• •• •• 0.973
GSVIVG00024135001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (517 aa)
• ••  • 0.965
GSVIVG00030640001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (141 aa)
•    •• 0.947
GSVIVG00032161001
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)
     •• 0.931
GSVIVG00000395001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (333 aa)
     •• 0.931
GSVIVG00000550001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (476 aa)
•  • •••0.929

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
PLN02618410 PLN02618, PLN02618, tryptophan synthase, beta chai 0.0
PRK04346397 PRK04346, PRK04346, tryptophan synthase subunit be 1e-178
COG0133396 COG0133, TrpB, Tryptophan synthase beta chain [Ami 1e-170
cd06446365 cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr 1e-152
PRK13028402 PRK13028, PRK13028, tryptophan synthase subunit be 1e-149
TIGR00263385 TIGR00263, trpB, tryptophan synthase, beta subunit 1e-147
PRK13803610 PRK13803, PRK13803, bifunctional phosphoribosylant 1e-131
PRK13802695 PRK13802, PRK13802, bifunctional indole-3-glycerol 8e-92
TIGR01415419 TIGR01415, trpB_rel, pyridoxal-phosphate dependent 4e-34
COG1350432 COG1350, COG1350, Predicted alternative tryptophan 8e-34
PRK12391427 PRK12391, PRK12391, tryptophan synthase subunit be 3e-33
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 2e-29
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 4e-26
cd01563324 cd01563, Thr-synth_1, Threonine synthase is a pyri 2e-11
COG0031300 COG0031, CysK, Cysteine synthase [Amino acid trans 3e-10
cd00640244 cd00640, Trp-synth-beta_II, Tryptophan synthase be 4e-10
COG0498411 COG0498, ThrC, Threonine synthase [Amino acid tran 2e-09
cd01561291 cd01561, CBS_like, CBS_like: This subgroup include 2e-09
cd01562304 cd01562, Thr-dehyd, Threonine dehydratase: The fir 3e-07
COG1171347 COG1171, IlvA, Threonine dehydratase [Amino acid t 3e-06
PRK06721352 PRK06721, PRK06721, threonine synthase; Reviewed 1e-05
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 1e-05
TIGR03945304 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio 4e-05
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 7e-05
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 1e-04
TIGR00260328 TIGR00260, thrC, threonine synthase 2e-04
PRK07409353 PRK07409, PRK07409, threonine synthase; Validated 8e-04
PRK07591421 PRK07591, PRK07591, threonine synthase; Validated 0.003
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain Back     alignment and domain information 
 Score =  568 bits (1466), Expect = 0.0
 Identities = 208/295 (70%), Positives = 251/295 (85%), Gaps = 3/295 (1%)

Query: 1   MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
           ++AKR+G+K I+A TGAGQHGVATA  CA+  L+C V+MG  DME+Q+  V  M+LLGA+
Sbjct: 112 LLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAE 171

Query: 61  VKAV---DGCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
           V+ V       K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F S+IGKETR+Q
Sbjct: 172 VRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQ 231

Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
           AMEKWGGKPDVL+ACVG GSNA+GLFHEFI+DEDVRLIGVEAAGFGLDSGKHAATL KGE
Sbjct: 232 AMEKWGGKPDVLVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGE 291

Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
           VGV HGAMSYLLQDE+GQI+  HS+  GL+YPGVGPE SFL+DTGRAE+Y+ TD+EA++A
Sbjct: 292 VGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEA 351

Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 292
           +QRL RLEGI PALE SHALA+LEKLCPTLP+G KVVVNCSG GDKDV+T + Y 
Sbjct: 352 FQRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNTAIKYL 406

Length = 410
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit Back     alignment and domain information
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed Back     alignment and domain information
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase Back     alignment and domain information
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated Back     alignment and domain information
>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PLN02618410 tryptophan synthase, beta chain 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
PRK13802695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
PRK08526403 threonine dehydratase; Provisional 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
PLN02356423 phosphateglycerate kinase 100.0
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PLN02550 591 threonine dehydratase 100.0
KOG1250457 consensus Threonine/serine dehydratases [Amino aci 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
PLN02970328 serine racemase 100.0
PRK06110322 hypothetical protein; Provisional 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
TIGR02079409 THD1 threonine dehydratase. This model represents 100.0
PRK06382406 threonine dehydratase; Provisional 100.0
PRK08639420 threonine dehydratase; Validated 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK08198404 threonine dehydratase; Provisional 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
PRK08638333 threonine dehydratase; Validated 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
PLN02565322 cysteine synthase 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK06815317 hypothetical protein; Provisional 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
PRK06260397 threonine synthase; Validated 100.0
PRK07409353 threonine synthase; Validated 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 100.0
PRK07334403 threonine dehydratase; Provisional 100.0
PRK08329347 threonine synthase; Validated 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
PLN00011323 cysteine synthase 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
PLN03013429 cysteine synthase 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
PLN02569484 threonine synthase 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PRK06450338 threonine synthase; Validated 100.0
PRK06381319 threonine synthase; Validated 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 100.0
PRK05638442 threonine synthase; Validated 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
KOG1481391 consensus Cysteine synthase [Amino acid transport 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
COG0498411 ThrC Threonine synthase [Amino acid transport and 99.98
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.95
PRK09225462 threonine synthase; Validated 99.95
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 99.94
cd01560460 Thr-synth_2 Threonine synthase catalyzes the final 99.94
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.88
KOG2616266 consensus Pyridoxalphosphate-dependent enzyme/pred 93.09
PF05368233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 88.07
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 83.34
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 82.48
PF00106167 adh_short: short chain dehydrogenase alcohol dehyd 81.27
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 80.9
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information 
Probab=100.00  E-value=1.9e-51  Score=376.14  Aligned_cols=292  Identities=71%  Similarity=1.217  Sum_probs=260.9

Q ss_pred             cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEe---cCchhHHHHHHHHH
Q 022573            2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAV---DGCFKEASSEAIRN   78 (295)
Q Consensus         2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~---~~~~~~~~~~~~~~   78 (295)
                      +|++++++.+|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||+|+.+   +++++++..+++++
T Consensus       113 ~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~  192 (410)
T PLN02618        113 LAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRD  192 (410)
T ss_pred             HHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            577889999999888899999999999999999999999965555667899999999999999   55777877666667


Q ss_pred             HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEee
Q 022573           79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVE  158 (295)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve  158 (295)
                      ++++..+.+|+.++..|+|||+.++++|+++++.|+.+|++++.+..||+||+|+|+||+++|++.+|+..+.++||+||
T Consensus       193 ~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~~~~v~ligVE  272 (410)
T PLN02618        193 WVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFIDDEDVRLIGVE  272 (410)
T ss_pred             HHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHhCCCceEEEEE
Confidence            77765678999999889999987889999999999999998888878999999999999999999999878999999999


Q ss_pred             cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573          159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY  238 (295)
Q Consensus       159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~  238 (295)
                      |.++...+..++.++..|+++.+++...|+++++.+++..+++|++||+++++++.+.+++....++++.|+|+|+++++
T Consensus       273 a~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~  352 (410)
T PLN02618        273 AAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAF  352 (410)
T ss_pred             eCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHH
Confidence            99985544456678888988877777778888877878888999999999999988777777788999999999999999


Q ss_pred             HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573          239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY  293 (295)
Q Consensus       239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~  293 (295)
                      ++|++++||+++++|+.+++++++++++++++++||+++||+|.||++++.+++.
T Consensus       353 ~~La~~eGIi~~~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~v~~~~~  407 (410)
T PLN02618        353 QRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNTAIKYLQ  407 (410)
T ss_pred             HHHHHHcCceEchhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcCCHHHHHHHhc
Confidence            9999999999999999999999999988888999999999999999999988764

>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1wdw_B385 Structural Basis Of Mutual Activation Of The Trypto 9e-87
1v8z_A388 X-Ray Crystal Structure Of The Tryptophan Synthase 1e-86
2o2e_A422 Mycobacterium Tuberculosis Tryptophan Synthase Beta 8e-81
2dh5_A397 Crystal Structure Of E. Coli Holo-Trpb Length = 397 1e-76
3pr2_B391 Tryptophan Synthase Indoline Quinonoid Structure Wi 2e-76
2tys_B397 Crystal Structures Of Mutant (Betak87t) Tryptophan 2e-76
1kfe_B394 Crystal Structure Of Alphat183v Mutant Of Tryptopha 2e-76
1k8x_B397 Crystal Structure Of Alphat183v Mutant Of Tryptopha 2e-76
1qop_B396 Crystal Structure Of Wild-type Tryptophan Synthase 2e-76
1x1q_A418 Crystal Structure Of Tryptophan Synthase Beta Chain 2e-76
1ubs_B397 Tryptophan Synthase (E.C.4.2.1.20) With A Mutation 2e-76
1a50_B396 Crystal Structure Of Wild-Type Tryptophan Synthase 2e-76
1ttp_B397 Tryptophan Synthase (E.C.4.2.1.20) In The Presence 2e-76
1a5a_B397 Cryo-Crystallography Of A True Substrate, Indole-3- 2e-76
1k7x_B396 Crystal Structure Of The Beta-Ser178pro Mutant Of T 3e-76
2j9y_B397 Tryptophan Synthase Q114n Mutant In Complex With Co 8e-76
1fuy_B396 Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTA 1e-75
1qoq_B396 Crystal Structure Of Wild-type Tryptophan Synthase 2e-75
2j9z_B397 Tryptophan Synthase T110 Mutant Complex Length = 39 4e-75
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan Synthase A2b2 Complex From A Hyperthermophile, Pyrococcus Furiosus Length = 385 Back     alignment and structure 
Iteration: 1

 Score =  316 bits (810), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 149/293 (50%), Positives = 206/293 (70%), Gaps = 3/293 (1%)
Query: 1   MIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLLGAQ 60
           ++AK MG+  ++A TGAGQHGV              ++MG  D+E+Q   V  MKLLGA 
Sbjct: 91  LLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGAN 150
Query: 61  VKAVDG---CFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
           V  V+      K+A +EA+R+WV   E ++YL G+VVGPHP P +VR+FQS+IG+E + Q
Sbjct: 151 VIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQ 210
Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
            +E  G  PDV++ACVG GSNA+G+F+ F+ND+ V+L+GVEA G GL+SGKH+A+L  G+
Sbjct: 211 ILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQ 270
Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
           VGV+HG +SY LQDEEGQI  THS+  GL+YPGVGPE ++L+   RAE+ T TD+EA++A
Sbjct: 271 VGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKA 330
Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVN 290
           +  L R EGI PALE++HA+A+  KL   +     ++VN SG GDKD+D V+ 
Sbjct: 331 FHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLK 383
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2 Subunit From Hyperthermophile, Pyrococcus Furiosus Length = 388 Back     alignment and structure
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Subunit Dimer (Apoform) Length = 422 Back     alignment and structure
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb Length = 397 Back     alignment and structure
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9 Inhibitor In Alpha Site Length = 391 Back     alignment and structure
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan Synthase Alpha2 Beta2 Complex With Ligands Bound To The Active Sites Of The Alpha And Beta Subunits Reveal Ligand-Induced Conformational Changes Length = 397 Back     alignment and structure
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium With L-ser Bound To The Beta Site Length = 394 Back     alignment and structure
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthase From Salmonella Typhimurium Length = 397 Back     alignment and structure
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From Thermus Thermophilus Hb8 Length = 418 Back     alignment and structure
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys 87->thr In The B Subunit And In The Presence Of Ligand L-Serine Length = 397 Back     alignment and structure
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase Complexed With 5- Fluoroindole Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of Cesium, Room Temperature Length = 397 Back     alignment and structure
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate, Indole-3-Glycerol Phosphate, Bound To A Mutant (Alphad60n) Tryptophan Synthase Alpha2beta2 Complex Reveals The Correct Orientation Of Active Site Alpha Glu 49 Length = 397 Back     alignment and structure
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of Tryptophan Synthase Length = 396 Back     alignment and structure
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound Ii Length = 397 Back     alignment and structure
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF TRYPTOPHAN Synthase Complexed With 5-Fluoro-Indole-Propanol Phosphate Length = 396 Back     alignment and structure
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase Complexed With Indole Glycerol Phosphate Length = 396 Back     alignment and structure
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 1e-173
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 1e-173
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 1e-173
1x1q_A418 Tryptophan synthase beta chain; structural genomic 1e-172
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 1e-34
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 3e-23
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 7e-21
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 1e-20
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 4e-15
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 2e-14
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 2e-12
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 2e-08
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 7e-08
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 4e-07
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 4e-07
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 2e-05
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 8e-05
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 2e-04
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Length = 422 Back     alignment and structure
 Score =  485 bits (1251), Expect = e-173
 Identities = 154/295 (52%), Positives = 207/295 (70%), Gaps = 3/295 (1%)

Query: 1   MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
           ++A+RMG+  ++A TGAGQHGVATA ACA L LDC ++MG  D  +Q+  V  M+LLGA+
Sbjct: 122 LLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAE 181

Query: 61  VKAVD---GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
           V AV       K+A +EA R+WV N + +YY  GT  GPHP P MVR+FQ IIG E R Q
Sbjct: 182 VVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQ 241

Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
              + G  PD ++ACVG GSNA+G+FH F++D  VRL+G EAAG G+++G+HAAT   G 
Sbjct: 242 IQGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAGDGVETGRHAATFTAGS 301

Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
            G +HG+ SYLLQDE+GQ + +HS+  GL+YPGVGPE ++L++ GR ++   TD EA+ A
Sbjct: 302 PGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDA 361

Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR 292
           +  LCR+EGI PA+E++HA+A   KL   L  GA +VVN SG GDKDV+T   + 
Sbjct: 362 FGLLCRMEGIIPAIESAHAVAGALKLGVELGRGAVIVVNLSGRGDKDVETAAKWF 416
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Length = 388 Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Length = 396 Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Length = 418 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 100.0
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 100.0
1kl7_A514 Threonine synthase; threonine synthesis, pyridoxal 99.97
4f4f_A468 Threonine synthase; structural genomics, niaid, na 99.97
3v7n_A487 Threonine synthase; ssgcid, structural genomics, s 99.97
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 88.33
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 83.24
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=5.1e-48  Score=358.65  Aligned_cols=291  Identities=51%  Similarity=0.907  Sum_probs=231.1

Q ss_pred             ccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHHHH
Q 022573            3 AKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRNW   79 (295)
Q Consensus         3 a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~~~   79 (295)
                      |++.+++.+|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+++++.+||+|+.++.   +++++..++.+.+
T Consensus       120 a~~~g~~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~~~~  199 (418)
T 1x1q_A          120 ARRMGKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDW  199 (418)
T ss_dssp             HHHHTCCEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5667888888878899999999999999999999999986444445788899999999999984   7888877665556


Q ss_pred             HhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhc--CCCceEEEe
Q 022573           80 VGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFIN--DEDVRLIGV  157 (295)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~--~~~~~vi~v  157 (295)
                      +++..+.+|+.+++.|+|||+.++.+|++|++.|+.+|+.++.+..||+||+|+|+||+++|++.+||.  .|.+|||+|
T Consensus       200 ~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~vigV  279 (418)
T 1x1q_A          200 ITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGV  279 (418)
T ss_dssp             HHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEEEEE
T ss_pred             HHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeEEEE
Confidence            666445688888998999997665679999999999998776566699999999999999999999964  789999999


Q ss_pred             ecCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHH
Q 022573          158 EAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA  237 (295)
Q Consensus       158 e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a  237 (295)
                      ||.++..+...+..++..|.....++...|++.+..+....++++++||+++.+++....+.+.+.++++.|+|+|++++
T Consensus       280 e~~g~~~~~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a  359 (418)
T 1x1q_A          280 EAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALEG  359 (418)
T ss_dssp             EECCTTSSSCHHHHHHHHTCEEEETTEEEEBCCC----------------CSBCCHHHHHHHHHTSEEEEEECHHHHHHH
T ss_pred             ecCCcccccHHHHHHHHcCCeeeeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEEEEECHHHHHHH
Confidence            99997544345667888888776554433443333344455789999999888887666677777899999999999999


Q ss_pred             HHHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhHh
Q 022573          238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYRY  293 (295)
Q Consensus       238 ~~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~~  293 (295)
                      +++|++++||++++++|+++++++++.+++.++++||+++||+|++|++.+.+++.
T Consensus       360 ~~~l~~~egi~~~~~sa~a~a~a~~~~~~~~~~~~Vv~vlsG~g~kd~~~~~~~~~  415 (418)
T 1x1q_A          360 FKLLARLEGIIPALESAHAIAYAAKVVPEMDKDQVVVINLSGRGDKDVTEVMRLLG  415 (418)
T ss_dssp             HHHHHHHHSCCBCHHHHHHHHHHHHHTTTSCTTCEEEEEECBBGGGTHHHHHHTCC
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCHHHHHHHhc
Confidence            99999999999999999999999999877778899999999999999999988764
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1v8za1386 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun 3e-73
d1qopb_390 c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S 2e-71
d1o58a_293 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 4e-24
d1jbqa_355 c.79.1.1 (A:) Cystathionine beta-synthase {Human ( 3e-20
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 4e-19
d1tdja1331 c.79.1.1 (A:5-335) Threonine deaminase {Escherichi 6e-18
d1ve1a1302 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C 3e-17
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 4e-16
d1v7ca_351 c.79.1.1 (A:) Threonine synthase {Thermus thermoph 1e-15
d1e5xa_477 c.79.1.1 (A:) Threonine synthase {Mouse-ear cress 8e-14
d1v71a1318 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S 3e-13
d1fcja_302 c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei 5e-11
d1wkva1382 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C 5e-11
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 6e-11
d1ve5a1310 c.79.1.1 (A:2-311) Threonine deaminase {Thermus th 5e-08
d2bhsa1292 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C 7e-08
d1y7la1310 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C 8e-08
d1z7wa1320 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C 4e-06
d1p5ja_319 c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa 8e-05
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  228 bits (581), Expect = 3e-73
 Identities = 155/294 (52%), Positives = 213/294 (72%), Gaps = 3/294 (1%)

Query: 1   MIAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQ 60
           ++AK MG+  ++A TGAGQHGVATA A A L +   ++MG  D+E+Q   V  MKLLGA 
Sbjct: 91  LLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGAN 150

Query: 61  VKAVDGC---FKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQ 117
           V  V+      K+A +EA+R+WV   E ++YL G+VVGPHP P +VR+FQS+IG+E + Q
Sbjct: 151 VIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQ 210

Query: 118 AMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGE 177
            +E  G  PDV++ACVG GSNA+G+F+ F+ND+ V+L+GVEA G GL+SGKH+A+L  G+
Sbjct: 211 ILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQ 270

Query: 178 VGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQA 237
           VGV+HG +SY LQDEEGQI  THS+  GL+YPGVGPE ++L+   RAE+ T TD+EA++A
Sbjct: 271 VGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKA 330

Query: 238 YQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 291
           +  L R EGI PALE++HA+A+  KL   +     ++VN SG GDKD+D V+  
Sbjct: 331 FHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKV 384
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 100.0
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 99.96
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 99.95
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 99.95
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.8
d1kl7a_511 Threonine synthase {Baker's yeast (Saccharomyces c 99.48
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 94.48
d1gu7a2189 2,4-dienoyl-CoA reductase {Yeast (Candida tropical 92.17
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 91.75
d1o8ca277 Hypothetical protein YhdH {Escherichia coli [TaxId 90.94
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 89.9
d1v3va2182 Leukotriene b4 12-hydroxydehydrogenase/prostagland 88.05
d1gtea4196 Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su 87.74
d1o89a2177 Hypothetical protein YhdH {Escherichia coli [TaxId 87.69
d1qora2179 Quinone oxidoreductase {Escherichia coli [TaxId: 5 87.68
d2fzwa2176 Alcohol dehydrogenase {Human (Homo sapiens), diffe 87.59
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 87.3
d1piwa2168 Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas 87.06
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 87.0
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 86.51
d1lvla2115 Dihydrolipoamide dehydrogenase {Pseudomonas putida 86.36
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 85.63
d3grsa2125 Glutathione reductase {Human (Homo sapiens) [TaxId 85.43
d1kjqa2111 Glycinamide ribonucleotide transformylase PurT, N- 85.16
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 85.03
d1h6va2122 Mammalian thioredoxin reductase {Rat (Rattus norve 84.98
d1uufa2168 Hypothetical protein YahK {Escherichia coli [TaxId 84.86
d1iz0a2171 Quinone oxidoreductase {Thermus thermophilus [TaxI 84.35
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 84.08
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 83.9
d1trba1190 Thioredoxin reductase {Escherichia coli [TaxId: 56 81.99
d1p0fa2174 Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 81.91
d1e3ia2174 Alcohol dehydrogenase {Mouse (Mus musculus), class 81.9
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 81.37
d1kola2195 Formaldehyde dehydrogenase {Pseudomonas putida [Ta 81.32
d1yb5a2174 Quinone oxidoreductase {Human (Homo sapiens) [TaxI 81.32
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 81.22
d2jhfa2176 Alcohol dehydrogenase {Horse (Equus caballus) [Tax 81.17
d1gega_255 meso-2,3-butanediol dehydrogenase {Klebsiella pneu 80.14
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.4e-42  Score=317.49  Aligned_cols=291  Identities=53%  Similarity=0.916  Sum_probs=232.2

Q ss_pred             cccccCCcEEEEeCCCChHHHHHHHHHHHcCCceEEEeeCCCcccchhhHHHHHHcCCEEEEecC---chhHHHHHHHHH
Q 022573            2 IAKRMGRKSIVAATGAGQHGVATAAACAKLALDCTVFMGTADMEKQSSKVLLMKLLGAQVKAVDG---CFKEASSEAIRN   78 (295)
Q Consensus         2 ~a~~~~~~~~V~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~l~~~GA~v~~~~~---~~~~~~~~~~~~   78 (295)
                      .|++.|+..+|+++|+||||+++|++|+++|++|+||||..+++.+..|+.+++.+||+|+.+++   .+.++..++.++
T Consensus        92 ~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~  171 (386)
T d1v8za1          92 LAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRD  171 (386)
T ss_dssp             HHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHhhcCCceeEeecccchHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHH
Confidence            57888998889988999999999999999999999999986555556788999999999999976   355666666555


Q ss_pred             HHhccCCceeeeCcccCCCCCchhhhhhhhhhhHHHHHHHHHHhCCCCCEEEEecCCchhHHHhhhhhhcCCCceEEEee
Q 022573           79 WVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVE  158 (295)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~e~~~ei~~q~~~~~d~vvv~vG~Gg~~~G~~~~~~~~~~~~vi~ve  158 (295)
                      ........++......++++++..+..++.+++.|+..|+.++.+..||+||+|+|+|++++|+..+++..+++++|+|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~~~~v~iigve  251 (386)
T d1v8za1         172 WVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVE  251 (386)
T ss_dssp             HHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTTCTTSEEEEEE
T ss_pred             HHhhhhhhhhccccccCccccchhhhccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhhccCceEEEEe
Confidence            54443344555555555555555567789999999999998888888999999999999999999988889999999999


Q ss_pred             cCCCCCCccchhhhhccCceeeeecccccccccccccccccccccccCCCCCCCchhHHHhhcCCceEEEeCHHHHHHHH
Q 022573          159 AAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAY  238 (295)
Q Consensus       159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~  238 (295)
                      |.++.........++..|.....+....+...+..+......++..++..+..++....+.....++.+.|+|+|+++++
T Consensus       252 p~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD~E~~~a~  331 (386)
T d1v8za1         252 AGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAF  331 (386)
T ss_dssp             EEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHH
T ss_pred             cCcccccccccccccccCccccccchhheeccCCCCcccccccccccccccccchHHHHHHhcCceEEEEECHHHHHHHH
Confidence            98875433333455666665554443333333334444445666667776666665556666677789999999999999


Q ss_pred             HHHHHHhCCCCCcchhhHHHHHHHhcCCCCCCCeEEEEecCCCcCChHHHHHhH
Q 022573          239 QRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNYR  292 (295)
Q Consensus       239 ~~l~~~~gi~~~~ssa~a~aa~~~~~~~~~~~~~vv~v~tg~g~~~~~~~~~~~  292 (295)
                      ++|+++|||+++|++|.+++++++++++++++++||+++||+|+||++++.+.+
T Consensus       332 ~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV~iltG~G~kD~~~~~~~~  385 (386)
T d1v8za1         332 HELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVS  385 (386)
T ss_dssp             HHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHH
T ss_pred             HHHHHhcCCeeccHHHHHHHHHHHHHHHcCCCCEEEEEeCCCccccHHHHHHhc
Confidence            999999999999999999999999998899999999999999999999998875
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Back     information, alignment and structure
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure