Citrus Sinensis ID: 022591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIGQGPPLKAYDIRHVSKDENSPASVDRVKTRCRVKRVVKPKANCNKAEVNMVDELARCAEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETASLLFRAEPESGAKPSERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLDFPA
Secondary Structure (PSIPRED)
ccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccEcccEcccccccccccHEEEEEEHccHHHHHHHHHHccHHccHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHHHcccccEEcccHHcccccccccccccEEEccccccccccHHHcccccccEEccccccccccccccHHcccccccHccccccccccccccccccEEccccccccccccccccccHHHHccccccccccccccccccccccccEEEEEEEccccccccccccEEEEccccEEEEcccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mrmscngcrvlrkgcnencsirpclqwikspesqaNATVFLAKFYGraglmnlinagpehlrpAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLkgapitpinseaaaigqgpplkaydirhvskdenspasvdrvktrcrvkrvvkpkancnkAEVNMVDELARCAEEMNrstshesslshqsELAVVEneskesdsmvSAETAETASLLfraepesgakpservgwdscgeiglgleltlgfepvavsranhvvpmkkrkledrstcdvdtckvelgldfpa
Flexible Loop (DISEMBL)
mrmscngcrvlrkgcnencSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSeaaaigqgppLKAYDIRHVskdenspasvdrvktrcrvkrvvkpkancnkaevnMVDELARCAEEMNRstshesslshqseLAVVENESKESDSMVSAETAETASllfraepesgakpservgwDSCGEIGLGLELTLGFEPVAVSranhvvpmkkrkledrstcdvdtckvelgldfpa
Low Complexity Region (SEG)
MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIGQGPPLKAYDIRHVSKDENSPASVDrvktrcrvkrvvkpkANCNKAEVNMVDELARCAEEMNRstshesslshqselAVVENESKESDSMVSAETAETASLLFRAEPESGAKPSERVGWDSCgeiglgleltlgfePVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLDFPA
Disordered region (IsUnstruct)
****CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG******AY********************RCRVKRVVK**ANC*************************************************************************VGWDSCGEIGLGLELTLGFEPVAVSRANHVVPM*********TCDVDTCKVELG*****
Disordered Region (DISOPRED)
**MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPI****************************************************************************************************************************************LGLELTLGFE****************************CKVELGLDFP*
Disordered Region (DISEMBL)
MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIGQGPPLKAYDIRHVSK***********KTRCRVKRVVKPKANCNKAEVNMVDELARCA*************************************AETASLLFRAE**********VGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLDFPA
Disordered Region (DISPRO)
***SCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIGQGPPLKAYDIRHVS***********************************************************************************************************GEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLDFPA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIGQGPPLKAYDIRHVSKDENSPASVDRVKTRCRVKRVVKPKANCNKAEVNMVDELARCAEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETASLLFRAEPESGAKPSERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLDFPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9M886	263	LOB domain-containing pro	yes	no	0.867	0.969	0.600	3e-84
Q9CA30	233	LOB domain-containing pro	no	no	0.775	0.978	0.507	1e-60
Q9SN23	247	LOB domain-containing pro	no	no	0.374	0.445	0.7	1e-43
Q9FN11	250	LOB domain-containing pro	no	no	0.374	0.44	0.654	9e-43
Q9SZE8	240	LOB domain-containing pro	no	no	0.377	0.462	0.666	5e-42
O64836	311	LOB domain-containing pro	no	no	0.268	0.254	0.321	1e-07
Q9SJW5	188	LOB domain-containing pro	no	no	0.326	0.510	0.32	2e-07
Q9ZW96	233	LOB domain-containing pro	no	no	0.146	0.184	0.702	3e-07
Q9FKZ3	313	LOB domain-containing pro	no	no	0.268	0.252	0.321	1e-06
Q9LQR0	190	LOB domain-containing pro	no	no	0.353	0.547	0.270	2e-06

>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1

 Score =  311 bits (797), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/298 (60%), Positives = 206/298 (69%), Gaps = 43/298 (14%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+E+CSIRPCL WIKSPE+QANATVFLAKFYGRAGLMNLINAGP H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRP +FRSLL+EACGRIVNPIYGSVGLLWSG+WQLCQ AVEAV+KG P+  I ++AA IG
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 QGPPLKAYDIRHVSKDENSPAS------VDRVKTRCRVKRVVKPKANCNKAEVNMVDELA 174
           QGPPLK YDIRH+SKD+NS A+      +   KTR R KRV         + V +  E  
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRV---------STVAIQAE-- 168

Query: 175 RCAEEMNRSTSHESSLSHQSEL-AVVENESKESDSMVSAETAETASLLFRAEPESGAKPS 233
             +E  +   SH+SSLSHQSE+ A  E ESKES+S VS        L F      G+   
Sbjct: 169 --SEGKSDEASHDSSLSHQSEIVAAHEGESKESESNVS------EVLAFSPPAVKGS--- 217

Query: 234 ERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVD-TCKVELGL 290
                   GEI   L+LTL  EP  VSRA HVVP+KKR++    TC  + TCK EL L
Sbjct: 218 --------GEI--KLDLTLRLEP--VSRAYHVVPVKKRRIGVFGTCQKESTCKTELML 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/258 (50%), Positives = 170/258 (65%), Gaps = 30/258 (11%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MR+SCNGCRVLRKGCN++C+IRPCLQWIKS +SQANAT+FLAKFYGRAGL+NLI +GP+H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPI--TPINSEAAA 118
           LRPA+FRSLLYEACGRIVNP+ GSVGL+WSG+W  CQAAV+AVL G PI  TP+ S +A+
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 119 IGQGPPLKAYDIRHVSKDENSPA-SVDRVKTRCRVKRVVKPKANCNKAEVNMVDELARCA 177
               PP + YDIRHV+KD  +   S + + TR       K K    + +   V++L  C+
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNAN---KSKTQTGRFKRESVNQLGECS 177

Query: 178 EEMNRSTSHESSLSHQSELAVVEN-ESKESDSMVSAETAETASLLFRAEPESGAKPSERV 236
            +M +  S  SS +H      +EN ES+                  R  P + + P+  +
Sbjct: 178 HDMWQLPS--SSATHGYGHFTLENVESR------------------REAPFNQSSPN--L 215

Query: 237 GWDSCGEIG-LGLELTLG 253
           G+D   +I  +GLEL LG
Sbjct: 216 GFDDQVDINEVGLELRLG 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 96/110 (87%)

Query: 3   MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62
           MSCNGCRVLRKGC+ENC +RPC+QWI+SPE+Q +ATVF+AKF+GRAGLM+ I+A PE   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI 112
           PA+F+SLLYEACGR VNP+ G+VGLLW+G+W +CQAAVE VL+G  + PI
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1

 Score =  174 bits (440), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 96/110 (87%)

Query: 3   MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62
           MSCNGCRVLRKGC+ENC +RPC+QWI++ ++Q +ATVF+AKF+GRAGLM+ I+A P+  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI 112
           PA+F+SLLYEACGR VNP+ G++G+LW+G+W +CQAAVE VL+G  + PI
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1

 Score =  171 bits (434), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 95/111 (85%)

Query: 3   MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62
           MSCNGCRVLRKGC+E C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ I++ PE  R
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 63  PAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPIN 113
           PA+F+SLL+EACGR VNP+ G+VG+LW+ +W +CQAAVE VL+G  + PI+
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 5  CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
          C  C++LR+ C + C   P       P +     +F+ + +G + +  ++N  P   R  
Sbjct: 6  CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query: 65 VFRSLLYEACGRIVNPIYGSVGLL 88
             SL YEA  RI +PIYG VGL+
Sbjct: 61 TVNSLFYEAEARIRDPIYGCVGLI 84

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 5   CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
           C GC+ LR+ C E C   P   +    E  +N    + K +G +    LI+  P+H R  
Sbjct: 8   CGGCKFLRRKCVEGCVFAP---YFCYEEGSSNFAA-IHKVFGASNFSKLISHLPDHDRCD 63

Query: 65  VFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVL 104
             R++ YEA  R+ +PIYG V  ++S   Q+     + VL
Sbjct: 64  AVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVL 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 4/47 (8%)

Query: 246 LGLELTLGFEPVAVSRANHVV-PMKKRKLEDRSTC-DVDTCKVELGL 290
           +GLELTLG EP+A  R NHVV PMKKRKLE   T  D DTCK+ELGL
Sbjct: 185 IGLELTLGLEPLA--RGNHVVVPMKKRKLERCGTSEDEDTCKIELGL 229

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 5  CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
          C  C+ LR+ C + C   P       P  Q     F+ K +G + +  L+N    + R  
Sbjct: 8  CAACKFLRRKCTQECVFAPYF-----PPDQPQKFAFVHKVFGASNVAKLLNELASNQRED 62

Query: 65 VFRSLLYEACGRIVNPIYGSVGLL 88
             SL YEA  R+ +P+YG VGL+
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLI 86

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 5   CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
           C  C++LR+ C E C + P       P   A  T+   + +G + ++  +   PE  R  
Sbjct: 34  CAACKILRRRCAERCVLAPYF----PPTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88

Query: 65  VFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSE 115
              S++YEA  RI +P+YG  G ++    Q+ +  ++A L  A +  +N +
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSE--LQAQLAKAQVEMVNMQ 137

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
356573974	293	PREDICTED: LOB domain-containing protein	0.965	0.969	0.702	1e-105
356545723	288	PREDICTED: LOB domain-containing protein	0.942	0.961	0.681	1e-104
118481089	296	unknown [Populus trichocarpa]	0.976	0.969	0.726	1e-104
356569068	301	PREDICTED: LOB domain-containing protein	0.935	0.913	0.671	1e-104
449455806	364	PREDICTED: LOB domain-containing protein	0.952	0.769	0.689	1e-103
388509766	287	unknown [Medicago truncatula]	0.952	0.975	0.671	1e-98
356527484	296	PREDICTED: LOB domain-containing protein	0.928	0.922	0.662	3e-98
449515508	253	PREDICTED: LOB domain-containing protein	0.782	0.909	0.766	5e-93
224127658	233	predicted protein [Populus trichocarpa]	0.785	0.991	0.627	7e-93
225452030	283	PREDICTED: LOB domain-containing protein	0.795	0.826	0.727	1e-92

>gi|356573974|ref|XP_003555129.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/303 (70%), Positives = 234/303 (77%), Gaps = 19/303 (6%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+E+CSIRPCLQWIK+PESQANATVFLAKFYGRAGLMNLINAGPE 
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPES 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEA+LKG PITPI SEAAA G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAILKGEPITPITSEAAANG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVDRVKTRCRVKR----VVKPKANCNKAEVNMVDELARC 176
           + PPLKAYDIRHVSKDENS     + KTR R  R    ++KPKA+        V      
Sbjct: 121 RAPPLKAYDIRHVSKDENSANETPKAKTRSRFNRTGSTLIKPKAS-KGTPTGFVPIEPVE 179

Query: 177 AEEMNRSTSHESSLSHQSELAV-VENESKESDSMVSAETAETASLLFRAEPESGAKPSER 235
            E  NR+TSHES LSH SE AV VE ESKES+S VS ET    S LF  EPES AK S+R
Sbjct: 180 PETANRTTSHESGLSHLSEAAVMVEGESKESESDVSVET----SNLFHEEPESVAKTSDR 235

Query: 236 VGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRK-LEDRSTCDV---DTCKVELGLD 291
            G +S  EI  GLELTLGFEP  VSR +HVVPMKKRK +  +S  D    D+CK+ELGL+
Sbjct: 236 TG-ESGNEI--GLELTLGFEP--VSRVHHVVPMKKRKIIASKSYGDSAEKDSCKMELGLE 290

Query: 292 FPA 294
           +PA
Sbjct: 291 YPA 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545723|ref|XP_003541285.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/305 (68%), Positives = 236/305 (77%), Gaps = 28/305 (9%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+E+CSIRPCLQWIK+PESQANATVFLAKFYGRAGLMNLINAGPE+
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPEN 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKG PITPI SEAAA G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEAAANG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVDRVKTRCRVKR----VVKPKANCNKAEVNMVDELARC 176
           + PPLKAYDIRHVSKD+NS     + KTR R KR    ++KPKA+     V +  E+A  
Sbjct: 121 RAPPLKAYDIRHVSKDQNSANETPKTKTRSRFKRTSGTLIKPKASKGTGFVPVEPEMA-- 178

Query: 177 AEEMNRSTSHESSLSHQSE-LAVVENESKESDSMVSAETAETASLLFRAEPESGAKPSER 235
               NR+ SHES LSH SE  A+VE ESKES+S+VS +T    S L   EPE  AK S  
Sbjct: 179 ----NRTASHESGLSHLSEATAMVEGESKESESVVSMDT----SNLIHEEPEWVAKTS-- 228

Query: 236 VGWDSCGEIG--LGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTC----DVDTCKVELG 289
              D  GE G  +GLELTLGFEP  VSR +HVVPMKKRK+ +  +C    + D+CK+ELG
Sbjct: 229 ---DGTGESGNEIGLELTLGFEP--VSRLHHVVPMKKRKIIELKSCGDSAEKDSCKMELG 283

Query: 290 LDFPA 294
           L++PA
Sbjct: 284 LEYPA 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481089|gb|ABK92498.1| unknown [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/300 (72%), Positives = 243/300 (81%), Gaps = 13/300 (4%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKS ESQANATVFLAKFYGRAGLMNLINAGPEH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSSESQANATVFLAKFYGRAGLMNLINAGPEH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGL+WSGSWQLCQAAVEAVLKGAPITPINSEAA  G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQLCQAAVEAVLKGAPITPINSEAAVNG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVD--RVKTRCRVKRVVKPKAN-----CNKAEVNMVDEL 173
            GPPLK YDIRHVSK+ENS AS D  R +TRCRV+RVVKPKA+      N      VD L
Sbjct: 121 HGPPLKVYDIRHVSKEENSAASNDANRARTRCRVRRVVKPKASKRACFGNGLASIAVDTL 180

Query: 174 ARCAEEMNRSTSHESSLSHQSELAVVENESKESD-SMVSAETAETASLLFRAEPESGAK- 231
           +   +E+ R TSHESS+SHQSELAV++ +SKESD SMVS ETAE ASLLF   PES    
Sbjct: 181 S-ARDELTRCTSHESSVSHQSELAVLDGDSKESDESMVSVETAE-ASLLFPPNPESKNDC 238

Query: 232 PSERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLD 291
            +  V  +    + LGL+LTLG EP  VSRA+HVVP+KKR++E   + DVDTCK+EL L+
Sbjct: 239 KAHDVASNGISGLELGLDLTLGLEP--VSRAHHVVPVKKRRVEAYGSGDVDTCKMELRLE 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569068|ref|XP_003552728.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/314 (67%), Positives = 239/314 (76%), Gaps = 39/314 (12%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNL+NAGPEH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRI+NPIYGSVGLLWSGSWQLCQAAVE VLKGAPITPI SEAAA G
Sbjct: 61  LRPAIFRSLLYEACGRILNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVD-----RVKTRCRVKRVV-----KPKANCNKAEVNMV 170
           +GPPLKAYDIRHVSKDENS A+ +     RVKTR RVKR +     KPK+  N+   N  
Sbjct: 121 RGPPLKAYDIRHVSKDENSAAASNETQHQRVKTRSRVKRPLANNNAKPKSTTNENNNNKG 180

Query: 171 DELARC----------AEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETASL 220
            EL              E MNRS SH+S+LSHQSE A     + ES+SM+SAET ET S+
Sbjct: 181 TELGSAEPSLVACEWTEEVMNRSGSHDSTLSHQSEAA----NAVESESMLSAETPET-SI 235

Query: 221 LFRAEPESGAKPSERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRS--- 277
           LFR EPE+  K   RV  D      +GLELTLGFEP  VSRA  VVP+KKR++E ++   
Sbjct: 236 LFREEPETNPK---RVSDD------VGLELTLGFEP--VSRARPVVPVKKRRIELKNFSG 284

Query: 278 TCDVDTCKVELGLD 291
           + +  +CK+ELGL+
Sbjct: 285 SAESGSCKMELGLE 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455806|ref|XP_004145641.1| PREDICTED: LOB domain-containing protein 41-like [Cucumis sativus]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/316 (68%), Positives = 238/316 (75%), Gaps = 36/316 (11%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 63  MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPDH 122

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAA  G
Sbjct: 123 LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAATTG 182

Query: 121 QGPPLKAYDIRHVSKDENSPASVD-----RVKTRCRVKR-VVKPKANCNKAEVNMVDELA 174
            GPPLKAYDIRHVSKDENS AS D      VKTRCR KR  VK KA+   A   +VDE  
Sbjct: 183 DGPPLKAYDIRHVSKDENSVASNDGGANRPVKTRCRFKRSSVKAKASKGIAS-TVVDEST 241

Query: 175 R--CAEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETA-----SLLFRAEPE 227
           R  C+ E+NRS+S ESSLSHQS+   +ENESKE++SM+S ETAE +     S+LFR+E  
Sbjct: 242 RPVCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPRPAQSVLFRSEST 301

Query: 228 SGAK-------PSERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTC- 279
            G +       PSE           L LELTLG EPV   RA HV+PMKKRK+E      
Sbjct: 302 GGREGVSVPIPPSE-----------LALELTLGMEPVL--RAQHVIPMKKRKIEAEVGLR 348

Query: 280 -DVDTCKVELGLDFPA 294
              +TC   LGLDF A
Sbjct: 349 PKSETCNTVLGLDFAA 364

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509766|gb|AFK42949.1| unknown [Medicago truncatula]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/301 (67%), Positives = 227/301 (75%), Gaps = 21/301 (6%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNL+NAGPEH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQA VEAVLKGAPITPI SEAAA G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQATVEAVLKGAPITPITSEAAANG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVD----RVKTRCRVKRVVKPKANCNKAEVNMVDELARC 176
           +GPPLKAYDIRHVSK+ENS AS +    RVK R R KR    K    + E +  D     
Sbjct: 121 RGPPLKAYDIRHVSKEENSAASTELTQQRVKPRSR-KRSSLAKLKIQEEEKSSNDNKG-V 178

Query: 177 AEEMNRSTSHESSLSHQSE-LAVVENESKESDSMVSAETAETASLLFRAEPE--SGAKPS 233
            E MNRS SHESS+SHQSE +AVV+ ESK+S+S       ET+ +LFR EPE     KP+
Sbjct: 179 EEVMNRSVSHESSISHQSEAVAVVDGESKDSES-------ETSMILFRDEPELDRKMKPA 231

Query: 234 ERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLDFP 293
           +R G +  GE  +GLELTLG EPV+       V  ++  L+D   C V +  VELGL +P
Sbjct: 232 DRTGEN--GEEKVGLELTLGLEPVSRVYHVVPVKKRRVVLKD---CGVGSWNVELGLQYP 286

Query: 294 A 294
           A
Sbjct: 287 A 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527484|ref|XP_003532339.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/311 (66%), Positives = 231/311 (74%), Gaps = 38/311 (12%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNL+NAGPEH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE VLKGAPITPI SEAAA G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVD-----RVKTRCRVKR-VVKPKANCNKAEVNMV---- 170
           + PPLKAYDIRHV KDENS A+ +     RVKTR RVKR + KPK+  N+          
Sbjct: 121 RCPPLKAYDIRHVFKDENSAAASNETQHQRVKTRSRVKRPLAKPKSTANQNNNINTKNTG 180

Query: 171 -----DE--LARC---AEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETASL 220
                DE  L  C    E +NRS SH+S+LSHQSE A     + ES+S++SAET    S+
Sbjct: 181 TEFGSDEPGLVACDWTEEALNRSGSHDSTLSHQSEAA----NAVESESILSAET----SI 232

Query: 221 LFRAEPESGAKPSERVGWDSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCD 280
           LFR EPES  K  +R          +GLELTLGFEP  VS A HVVP+KKR++ D     
Sbjct: 233 LFRDEPESNPKRLDRTD-------DVGLELTLGFEP--VSGAQHVVPVKKRRI-DLKDFS 282

Query: 281 VDTCKVELGLD 291
             +CK+ELGL+
Sbjct: 283 GSSCKMELGLE 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515508|ref|XP_004164791.1| PREDICTED: LOB domain-containing protein 41-like [Cucumis sativus]

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 187/244 (76%), Positives = 204/244 (83%), Gaps = 14/244 (5%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPDH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAA  G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAATTG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVDR-----VKTRCRVKR-VVKPKANCNKAEVNMVDELA 174
            GPPLKAYDIRHVSKDENS AS D      VKTRCR KR  VK KA+   A   +VDE  
Sbjct: 121 DGPPLKAYDIRHVSKDENSVASNDGGANRPVKTRCRFKRSSVKAKASKGIAST-VVDEST 179

Query: 175 R--CAEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETA-----SLLFRAEPE 227
           R  C+ E+NRS+S ESSLSHQS+   +ENESKE++SM+S ETAE +     S+LFR+E  
Sbjct: 180 RPVCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPRPAQSVLFRSEST 239

Query: 228 SGAK 231
            GA+
Sbjct: 240 GGAR 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127658|ref|XP_002329332.1| predicted protein [Populus trichocarpa] gi|222870786|gb|EEF07917.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (888), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 184/293 (62%), Positives = 206/293 (70%), Gaps = 62/293 (21%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC+ENCSIRPCLQWIKS ESQANATVFLAKFYGRAGLMNLINAGPEH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSSESQANATVFLAKFYGRAGLMNLINAGPEH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+FRSLLYEACGRIVNPIYGSVGL+WSGSWQLCQAAVEAVLKGAPITPINSEAA  G
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWQLCQAAVEAVLKGAPITPINSEAAVNG 120

Query: 121 QGPPLKAYDIRHVSKDENSPASVD--RVKTRCRVKRVVKPKANCNKAEVNMVDELARCAE 178
            GPPLK YDIRHVSK+ENS AS D  R +TRCR                           
Sbjct: 121 HGPPLKVYDIRHVSKEENSAASNDANRARTRCR--------------------------- 153

Query: 179 EMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETASLLFRAEPESGAKPSERVGW 238
                    SS+SHQSELAV++ +SKESD  ++ + A                       
Sbjct: 154 ---------SSVSHQSELAVLDGDSKESDESMAHDVAS---------------------- 182

Query: 239 DSCGEIGLGLELTLGFEPVAVSRANHVVPMKKRKLEDRSTCDVDTCKVELGLD 291
           +    + LGL+LTLG EP  VSRA+HVVP+KKR++E   + DVDTCK+EL L+
Sbjct: 183 NGISGLELGLDLTLGLEP--VSRAHHVVPVKKRRVEAYGSGDVDTCKMELRLE 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452030|ref|XP_002283795.1| PREDICTED: LOB domain-containing protein 41 [Vitis vinifera] gi|147795554|emb|CAN72182.1| hypothetical protein VITISV_004355 [Vitis vinifera]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/242 (72%), Positives = 195/242 (80%), Gaps = 8/242 (3%)

Query: 1   MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
           MRMSCNGCRVLRKGC++NC+IRPCLQWIK+PESQANATVFLAKFYGRAGLMNLIN+GPEH
Sbjct: 1   MRMSCNGCRVLRKGCSDNCTIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINSGPEH 60

Query: 61  LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
           LRPA+F SLLYEACGRIVNPIYGSVGLLWSGSW LCQAAVEAVLKG PIT I SEAAA G
Sbjct: 61  LRPAIFSSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAVLKGEPITQITSEAAATG 120

Query: 121 QGPPLKAYDIRHVSKDENSPAS-VDRVKTRCRVKRVVKPKANCNKAEVNMVDELAR---- 175
           QGPPLKAYDIRHVSKDENS A+ + R K RCR KR      + NKA  N V E  +    
Sbjct: 121 QGPPLKAYDIRHVSKDENSAANDLHRAKNRCRFKRSGVRAKSGNKAGTNSVAESKQGMNR 180

Query: 176 --CAEEMNRSTSHESSLSHQSELAVVENESKESDSMVSAETAETASLLFRAEPESGAKPS 233
              A+E+NRSTSH+S++SH SE   VE ES+E+ SMVS ETAE  S LFRAE +   KP 
Sbjct: 181 GSLADELNRSTSHDSTVSHPSEPHTVEGESRETVSMVSVETAE-PSFLFRAEQKRVQKPE 239

Query: 234 ER 235
           +R
Sbjct: 240 KR 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2076829	263	LBD41 "LOB domain-containing p	0.690	0.771	0.627	4.7e-72
TAIR|locus:2019698	233	LBD40 "AT1G67100" [Arabidopsis	0.469	0.592	0.822	3.7e-70
TAIR|locus:2201267	233	LBD42 "AT1G68510" [Arabidopsis	0.605	0.763	0.587	6.1e-55
TAIR|locus:2083063	247	LBD38 "LOB domain-containing p	0.374	0.445	0.7	6.6e-42
TAIR|locus:2158247	250	LBD37 "LOB domain-containing p	0.374	0.44	0.654	9.6e-41
TAIR|locus:2120071	240	LBD39 "AT4G37540" [Arabidopsis	0.377	0.462	0.666	6.8e-40
TAIR|locus:2042501	188	LBD14 "LOB domain-containing p	0.326	0.510	0.32	1.5e-07
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.353	0.547	0.270	1.5e-06
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.340	0.581	0.276	4.8e-06
TAIR|locus:2074648	165	LBD21 "LOB domain-containing p	0.408	0.727	0.263	4.9e-06

TAIR|locus:2076829 LBD41 "LOB domain-containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 133/212 (62%), Positives = 152/212 (71%)

Query:     1 MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
             MRMSCNGCRVLRKGC+E+CSIRPCL WIKSPE+QANATVFLAKFYGRAGLMNLINAGP H
Sbjct:     1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query:    61 LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
             LRP +FRSLL+EACGRIVNPIYGSVGLLWSG+WQLCQ AVEAV+KG P+  I ++AA IG
Sbjct:    61 LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query:   121 QGPPLKAYDIRHVSKDENSPASVDXXXXXXXXXXXXXXXANCNKAE-VNMVDELARCAEE 179
             QGPPLK YDIRH+SKD+NS A+                 A   +A+ V+ V   A    +
Sbjct:   121 QGPPLKIYDIRHISKDDNSAAAA--------TGSTDLKLAKTRRAKRVSTVAIQAESEGK 172

Query:   180 MNRXXXXXXXXXXXXXXAVVENESKESDSMVS 211
              +               A  E ESKES+S VS
Sbjct:   173 SDEASHDSSLSHQSEIVAAHEGESKESESNVS 204

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2019698 LBD40 "AT1G67100" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 116/141 (82%), Positives = 127/141 (90%)

Query:     1 MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
             MRMSCNGCRVLRKGC+ENCSIRPCLQWIKS ESQANATVFLAKFYGRAGLMNL+N GP+H
Sbjct:     1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query:    61 LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAAIG 120
             LRPA+FRSLLYEACGRIVNPIYGSVGLLWSG+W LCQAAVEAV++G+P+TPI  +AA  G
Sbjct:    61 LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query:   121 QGPPL--KAYDIRHVS-KDEN 138
             Q PP   K  DIRHVS +DEN
Sbjct:   121 QAPPFNNKLCDIRHVSSRDEN 141

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2201267 LBD42 "AT1G68510" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 107/182 (58%), Positives = 133/182 (73%)

Query:     1 MRMSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60
             MR+SCNGCRVLRKGCN++C+IRPCLQWIKS +SQANAT+FLAKFYGRAGL+NLI +GP+H
Sbjct:     1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query:    61 LRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPIT--PINSEAAA 118
             LRPA+FRSLLYEACGRIVNP+ GSVGL+WSG+W  CQAAV+AVL G PIT  P+ S +A+
Sbjct:    61 LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query:   119 IGQGPPLKAYDIRHVSKDENSPASVDXXXXXXXXXXXXXXXANCNKAEVNMVDELARCAE 178
                 PP + YDIRHV+KD  +    D                   + +   V++L  C+ 
Sbjct:   121 HQIIPPHRTYDIRHVAKDPTTGG--DSSENLATRVNANKSKTQTGRFKRESVNQLGECSH 178

Query:   179 EM 180
             +M
Sbjct:   179 DM 180

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083063 LBD38 "LOB domain-containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 77/110 (70%), Positives = 96/110 (87%)

Query:     3 MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62
             MSCNGCRVLRKGC+ENC +RPC+QWI+SPE+Q +ATVF+AKF+GRAGLM+ I+A PE   
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query:    63 PAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI 112
             PA+F+SLLYEACGR VNP+ G+VGLLW+G+W +CQAAVE VL+G  + PI
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2158247 LBD37 "LOB domain-containing protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 72/110 (65%), Positives = 96/110 (87%)

Query:     3 MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62
             MSCNGCRVLRKGC+ENC +RPC+QWI++ ++Q +ATVF+AKF+GRAGLM+ I+A P+  R
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query:    63 PAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI 112
             PA+F+SLLYEACGR VNP+ G++G+LW+G+W +CQAAVE VL+G  + PI
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110

GO:0005634 "nucleus" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2120071 LBD39 "AT4G37540" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 74/111 (66%), Positives = 95/111 (85%)

Query:     3 MSCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLR 62
             MSCNGCRVLRKGC+E C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ I++ PE  R
Sbjct:     1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query:    63 PAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPIN 113
             PA+F+SLL+EACGR VNP+ G+VG+LW+ +W +CQAAVE VL+G  + PI+
Sbjct:    61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2042501 LBD14 "LOB domain-containing protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 32/100 (32%), Positives = 49/100 (49%)

Query:     5 CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
             C GC+ LR+ C E C   P   +    E  +N    + K +G +    LI+  P+H R  
Sbjct:     8 CGGCKFLRRKCVEGCVFAPYFCY---EEGSSNFAA-IHKVFGASNFSKLISHLPDHDRCD 63

Query:    65 VFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVL 104
               R++ YEA  R+ +PIYG V  ++S   Q+     + VL
Sbjct:    64 AVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVL 103

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 30/111 (27%), Positives = 54/111 (48%)

Query:     5 CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
             C  C++LR+ C E C + P       P   A  T+   + +G + ++  +   PE  R  
Sbjct:    34 CAACKILRRRCAERCVLAPYFP----PTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88

Query:    65 VFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSE 115
                S++YEA  RI +P+YG  G ++    Q+ +  ++A L  A +  +N +
Sbjct:    89 AVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSE--LQAQLAKAQVEMVNMQ 137

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 29/105 (27%), Positives = 51/105 (48%)

Query:     5 CNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPA 64
             C  C++LR+ C ++C   P   +  + E Q  A V   + +G + +  ++   P H R  
Sbjct:    14 CAACKLLRRRCAQDCVFSP---YFPADEPQKFANVH--RVFGASNVNKMLQELPIHQRGD 68

Query:    65 VFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPI 109
                S++YEA  R+ +P+YG VG + S   Q+     +  L  A +
Sbjct:    69 AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2074648 LBD21 "LOB domain-containing protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 34/129 (26%), Positives = 60/129 (46%)

Query:     4 SCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRP 63
             SC  C++L++ C   C   P   + +S +    A V   K +G + +  L+   PE  R 
Sbjct:    11 SCAACKLLKRRCTPTCIFAP---YFRSSDLITFAKVH--KVFGASNVSKLLGEVPEEQRQ 65

Query:    64 AVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE-AVLKGAPITPI---NSEAAAI 119
                 SL YEA  R+ +P+YG +G + S   ++ +   + AV +   +      NS+ + +
Sbjct:    66 ETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNNSQVSPL 125

Query:   120 GQGPPLKAY 128
                P L A+
Sbjct:   126 DDSPELAAF 134

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M886	LBD41_ARATH	No assigned EC number	0.6006	0.8673	0.9695	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_123000043 hypothetical protein (233 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	5e-39

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  132 bits (334), Expect = 5e-39
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 4   SCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRP 63
            C  C+ LR+ C  +C + P       P  Q      + K +G + +  L+ A P   R 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYF-----PAEQPARFANVHKLFGASNVTKLLKALPPEQRD 55

Query: 64  AVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPI 109
              RSLLYEA  R  +P+YG VG++WS   QL Q   E  L  A +
Sbjct: 56  DAMRSLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.8e-45  Score=297.44  Aligned_cols=101  Identities=30%  Similarity=0.576  Sum_probs=97.4

Q ss_pred             CChhhhhccCCCCCCCccccCCCCCCCChhhhhhHHHHHhhcccccHHHHHhcCCCCChHHHHHHhhhhhcccccCCCcc
Q 022591            4 SCNGCRVLRKGCNENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYG   83 (294)
Q Consensus         4 ~CAACK~LRRkC~~dCilAPYFPw~~spe~q~naf~fvhKVFG~SNV~KmL~~lp~~~R~dA~~SL~YEA~aR~rDPVyG   83 (294)
                      +|||||||||+|+++|+||||||     .++.+.|.++|||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP-----~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G   75 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFP-----ADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG   75 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCC-----hhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence            79999999999999999999998     5667889999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhHHHHHHHHHHHHcCCCc
Q 022591           84 SVGLLWSGSWQLCQAAVEAVLKGAPI  109 (294)
Q Consensus        84 cvGiI~~Lq~Qi~qaavEavL~ga~I  109 (294)
                      |+|+||.|||||+++++|+++.+++|
T Consensus        76 c~G~i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   76 CVGIISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999998876

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00