Citrus Sinensis ID: 022609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP
ccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEccEEEEEEcccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccEccccccccc
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNIniykypigklrvqpVGIIIFAAIMATLGFQVLIEAVEKLvkdeppkkmntVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSlvgqsappeILQKLTYLVIrhpevkridtvRAYTFGVLYFVEVdielpeelplkEAHAIGESLQNKIEKLPEVERAFVHLDyecdhkpehtvlnklpssqp
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEklvkdeppkkMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECdhkpehtvlnklpssqp
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDvvtnvvglvaavlgDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP
****NYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDH***************
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEH***********
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP
MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECD*****TVLNK******
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
Q10PP8397 Metal tolerance protein 4 yes no 1.0 0.740 0.850 1e-148
Q9M2P2411 Putative metal tolerance yes no 0.993 0.710 0.792 1e-138
Q6Z7K5410 Metal tolerance protein 3 no no 1.0 0.717 0.755 1e-133
Q5NA18415 Metal tolerance protein 5 no no 0.969 0.686 0.594 8e-94
Q9SAJ7402 Metal tolerance protein 9 no no 0.952 0.696 0.599 4e-92
Q0WU02428 Metal tolerance protein 1 no no 0.952 0.654 0.592 6e-91
Q9LDU0391 Metal tolerance protein 7 no no 0.959 0.721 0.584 7e-88
O80632394 Metal tolerance protein 1 no no 0.962 0.718 0.573 2e-78
Q0DHJ5376 Metal tolerance protein 6 no no 0.829 0.648 0.510 2e-69
C0SP78297 Uncharacterized transport yes no 0.887 0.878 0.266 3e-15
>sp|Q10PP8|MTP4_ORYSJ Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1 Back     alignment and function desciption
 Score =  525 bits (1351), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/295 (85%), Positives = 276/295 (93%), Gaps = 1/295 (0%)

Query: 1   MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYP 60
           MKISNYAN++LLA KI+ATIKSGSIAIAASTLDSLLDLMAGGILWFTH++MK+IN+YKYP
Sbjct: 103 MKISNYANMILLALKIYATIKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKSINVYKYP 162

Query: 61  IGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 120
           IGKLRVQPVGIIIFAA+MATLGFQV ++AVEKL+ +E P K+  VQL WLYSIMI ATVV
Sbjct: 163 IGKLRVQPVGIIIFAAVMATLGFQVFVQAVEKLIVNETPDKLTPVQLTWLYSIMIFATVV 222

Query: 121 KLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTI 180
           KLALW+YC++SGNKIVRAYAKDHYFDVVTNVVGL AAVLGD FYWWIDP GAI LAVYTI
Sbjct: 223 KLALWLYCRTSGNKIVRAYAKDHYFDVVTNVVGLAAAVLGDMFYWWIDPVGAIALAVYTI 282

Query: 181 TNWSETVMENAVSLVGQSAPPEILQKLTYLVIR-HPEVKRIDTVRAYTFGVLYFVEVDIE 239
           TNWS TV ENAVSLVG+SAPPE+LQKLTYL IR HP++KR+DTVRAYTFGVLYFVEVDIE
Sbjct: 283 TNWSGTVWENAVSLVGESAPPEMLQKLTYLAIRHHPQIKRVDTVRAYTFGVLYFVEVDIE 342

Query: 240 LPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP 294
           LPEELPLKEAHAIGESLQ KIE+LPEVERAFVHLD+ECDHKPEH +L+KLPSSQP
Sbjct: 343 LPEELPLKEAHAIGESLQIKIEELPEVERAFVHLDFECDHKPEHNILSKLPSSQP 397
Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9M2P2|MTPC3_ARATH Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z7K5|MTP3_ORYSJ Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1 Back     alignment and function description
>sp|Q5NA18|MTP5_ORYSJ Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAJ7|MTP9_ARATH Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2 Back     alignment and function description
>sp|Q0WU02|MTP10_ARATH Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDU0|MTP7_ORYSJ Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1 Back     alignment and function description
>sp|O80632|MTP11_ARATH Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1 Back     alignment and function description
>sp|Q0DHJ5|MTP6_ORYSJ Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2 Back     alignment and function description
>sp|C0SP78|YDFM_BACSU Uncharacterized transporter YdfM OS=Bacillus subtilis (strain 168) GN=ydfM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
242036401 399 hypothetical protein SORBIDRAFT_01g04182 1.0 0.736 0.854 1e-147
293332327 402 uncharacterized protein LOC100381541 [Ze 1.0 0.731 0.854 1e-147
414865709295 TPA: hypothetical protein ZEAMMB73_67337 1.0 0.996 0.854 1e-147
224076030 401 metal tolerance protein [Populus trichoc 0.993 0.728 0.849 1e-147
225435642 416 PREDICTED: metal tolerance protein 4 [Vi 0.996 0.704 0.843 1e-147
115451677 441 Os03g0226400 [Oryza sativa Japonica Grou 1.0 0.666 0.850 1e-147
122230824 397 RecName: Full=Metal tolerance protein 4; 1.0 0.740 0.850 1e-146
363806652 409 uncharacterized protein LOC100785952 [Gl 1.0 0.718 0.840 1e-146
24308633 422 Unknown protein [Oryza sativa Japonica G 1.0 0.696 0.850 1e-146
125542968 422 hypothetical protein OsI_10595 [Oryza sa 1.0 0.696 0.850 1e-146
>gi|242036401|ref|XP_002465595.1| hypothetical protein SORBIDRAFT_01g041820 [Sorghum bicolor] gi|241919449|gb|EER92593.1| hypothetical protein SORBIDRAFT_01g041820 [Sorghum bicolor] Back     alignment and taxonomy information
 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/295 (85%), Positives = 278/295 (94%), Gaps = 1/295 (0%)

Query: 1   MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYP 60
           MKISNYANIVLLA K++ATIKSGSIAIAASTLDSLLDLMAGGILWFTH++MK+IN+YKYP
Sbjct: 105 MKISNYANIVLLALKVYATIKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKSINVYKYP 164

Query: 61  IGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 120
           IGKLRVQPVGIIIFAA+MATLGFQV I+AVEKL+ +E P K+N VQL WLYSIMI ATVV
Sbjct: 165 IGKLRVQPVGIIIFAAVMATLGFQVFIQAVEKLIVNEAPDKLNQVQLLWLYSIMIFATVV 224

Query: 121 KLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTI 180
           KLALW+YC++SGNKIVRAYAKDHYFDVVTNVVGL AAVLGD FYWWIDP GAI LAVYTI
Sbjct: 225 KLALWLYCRTSGNKIVRAYAKDHYFDVVTNVVGLAAAVLGDRFYWWIDPIGAIALAVYTI 284

Query: 181 TNWSETVMENAVSLVGQSAPPEILQKLTYLVIR-HPEVKRIDTVRAYTFGVLYFVEVDIE 239
           +NWS TV ENAVSLVG+SAPPE+LQKLTYL IR HP++KR+DTVRAYTFGVLYFVEVDIE
Sbjct: 285 SNWSGTVWENAVSLVGESAPPEMLQKLTYLAIRHHPQIKRVDTVRAYTFGVLYFVEVDIE 344

Query: 240 LPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP 294
           LPE+LPLKEAHAIGESLQ KIE+LPEVERAFVHLD+ECDHKPEH++L+KLPSSQP
Sbjct: 345 LPEDLPLKEAHAIGESLQIKIEELPEVERAFVHLDFECDHKPEHSILSKLPSSQP 399

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|293332327|ref|NP_001167840.1| uncharacterized protein LOC100381541 [Zea mays] gi|223944355|gb|ACN26261.1| unknown [Zea mays] gi|414865710|tpg|DAA44267.1| TPA: hypothetical protein ZEAMMB73_673370 [Zea mays] Back     alignment and taxonomy information
>gi|414865709|tpg|DAA44266.1| TPA: hypothetical protein ZEAMMB73_673370 [Zea mays] Back     alignment and taxonomy information
>gi|224076030|ref|XP_002304880.1| metal tolerance protein [Populus trichocarpa] gi|222842312|gb|EEE79859.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435642|ref|XP_002285662.1| PREDICTED: metal tolerance protein 4 [Vitis vinifera] gi|297746418|emb|CBI16474.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115451677|ref|NP_001049439.1| Os03g0226400 [Oryza sativa Japonica Group] gi|113547910|dbj|BAF11353.1| Os03g0226400, partial [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|122230824|sp|Q10PP8.1|MTP4_ORYSJ RecName: Full=Metal tolerance protein 4; Short=OsMTP4 gi|108706950|gb|ABF94745.1| Metal tolerance protein C3, putative, expressed [Oryza sativa Japonica Group] gi|215686904|dbj|BAG89754.1| unnamed protein product [Oryza sativa Japonica Group] gi|215687275|dbj|BAG91840.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|363806652|ref|NP_001242003.1| uncharacterized protein LOC100785952 [Glycine max] gi|255635321|gb|ACU18014.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|24308633|gb|AAN52756.1| Unknown protein [Oryza sativa Japonica Group] gi|125585466|gb|EAZ26130.1| hypothetical protein OsJ_09993 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125542968|gb|EAY89107.1| hypothetical protein OsI_10595 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
TAIR|locus:2095873411 AT3G58060 [Arabidopsis thalian 0.989 0.708 0.754 7.7e-119
TAIR|locus:2032830428 AT1G16310 [Arabidopsis thalian 0.952 0.654 0.560 1.3e-82
TAIR|locus:2039697394 MTP11 [Arabidopsis thaliana (t 0.962 0.718 0.549 5.2e-81
DICTYBASE|DDB_G0285541434 DDB_G0285541 "putative cation 0.921 0.624 0.416 2.1e-54
WB|WBGene00018948446 F56C9.3 [Caenorhabditis elegan 0.404 0.266 0.475 1e-45
ASPGD|ASPL0000076507558 AN5049 [Emericella nidulans (t 0.928 0.489 0.357 3.1e-44
WB|WBGene00019841489 R02F11.3 [Caenorhabditis elega 0.935 0.562 0.339 1.2e-42
UNIPROTKB|G4MRQ3561 MGG_04623 "Cation efflux famil 0.928 0.486 0.342 4.8e-39
ASPGD|ASPL0000052398401 AN10155 [Emericella nidulans ( 0.955 0.700 0.314 1.9e-37
WB|WBGene00019803341 PDB1.1 [Caenorhabditis elegans 0.921 0.794 0.324 1.7e-36
TAIR|locus:2095873 AT3G58060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 221/293 (75%), Positives = 254/293 (86%)

Query:     1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYP 60
             M+ISN+ANI LLA KI+AT+KSGSIAIAASTLDSLLDLMAGGILWFTH++MKN+NIYKYP
Sbjct:   117 MQISNWANIFLLALKIYATVKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKNVNIYKYP 176

Query:    61 IGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 120
             IGKLRVQPVGIIIFAA+MATLGFQVL+ A E+L+ +EP +KMN VQL WLYSIM+ AT +
Sbjct:   177 IGKLRVQPVGIIIFAAVMATLGFQVLLVAAEQLISNEPSEKMNHVQLIWLYSIMLSATAI 236

Query:   121 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWWIDPAGAILLAVYTI 180
             KL LWIYCKSS N IVRAYAKDH+FD              ++FYWW+DP GAILLA+YTI
Sbjct:   237 KLVLWIYCKSSRNHIVRAYAKDHHFDVVTNVLGLVAAVLANAFYWWLDPTGAILLAIYTI 296

Query:   181 TNWSETVMENAVSLVGQSAPPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEVDI 238
              NWS TVMENAVSL+GQSAPPE+LQKLTYLV+R     +K +DTVRAYTFGVLYFVEVDI
Sbjct:   297 VNWSGTVMENAVSLIGQSAPPEVLQKLTYLVMRQGGDNIKHVDTVRAYTFGVLYFVEVDI 356

Query:   239 ELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPS 291
             ELPE+LPLKEAHAIGESLQ K+E+LPEVERAFVHLD+EC HKPEH+VL+ +P+
Sbjct:   357 ELPEDLPLKEAHAIGESLQIKLEELPEVERAFVHLDFECHHKPEHSVLSTIPN 409
GO:0005634 "nucleus" evidence=ISM
GO:0006812 "cation transport" evidence=IEA;ISS
GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS
GO:0015562 "efflux transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2032830 AT1G16310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039697 MTP11 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0285541 DDB_G0285541 "putative cation efflux pump" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00018948 F56C9.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000076507 AN5049 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00019841 R02F11.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRQ3 MGG_04623 "Cation efflux family protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000052398 AN10155 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00019803 PDB1.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10PP8MTP4_ORYSJNo assigned EC number0.85081.00.7405yesno
Q9M2P2MTPC3_ARATHNo assigned EC number0.79250.99310.7104yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb01g041820.1
hypothetical protein (399 aa)
(Sorghum bicolor)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
COG0053304 COG0053, MMT1, Predicted Co/Zn/Cd cation transport 2e-44
pfam01545273 pfam01545, Cation_efflux, Cation efflux family 3e-42
TIGR01297268 TIGR01297, CDF, cation diffusion facilitator famil 9e-31
PRK09509299 PRK09509, fieF, ferrous iron efflux protein F; Rev 7e-09
COG1230296 COG1230, CzcD, Co/Zn/Cd efflux system component [I 7e-07
COG3965314 COG3965, COG3965, Predicted Co/Zn/Cd cation transp 5e-04
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information 
 Score =  152 bits (386), Expect = 2e-44
 Identities = 73/280 (26%), Positives = 146/280 (52%), Gaps = 12/280 (4%)

Query: 1   MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFT-HVAMKNINIYKY 59
             IS   N+ L   K+ A I +GS+A+ A  + SL D++A  I+     ++ K  +   +
Sbjct: 15  ALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPD-RDH 73

Query: 60  PIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATV 119
           P G  + + +  +I + ++   GF++L+EA+++L+  +P +            + + + V
Sbjct: 74  PYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLA-----LGVALISIV 128

Query: 120 VKLALWIY----CKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILL 175
           +K AL+ Y     K + ++ + A A  H  DV+T++  LV  +     + W+DP  A+L+
Sbjct: 129 IKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLDPLAALLI 188

Query: 176 AVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVE 235
           ++Y +        E+   L+  +  PE L+K+  +++  P VK +  +R    G   F++
Sbjct: 189 SLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFID 248

Query: 236 VDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLD 274
           V IE+  +L L+EAH I + ++ +I+K  P+V    +H++
Sbjct: 249 VHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288

Length = 304
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family Back     alignment and domain information
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter Back     alignment and domain information
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 100.0
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 100.0
PRK03557312 zinc transporter ZitB; Provisional 100.0
TIGR01297268 CDF cation diffusion facilitator family transporte 100.0
COG1230296 CzcD Co/Zn/Cd efflux system component [Inorganic i 100.0
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 100.0
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 100.0
KOG1482379 consensus Zn2+ transporter [Inorganic ion transpor 100.0
KOG1483404 consensus Zn2+ transporter ZNT1 and related Cd2+/Z 100.0
KOG1484354 consensus Putative Zn2+ transporter MSC2 (cation d 100.0
COG3965314 Predicted Co/Zn/Cd cation transporters [Inorganic 99.97
KOG2802503 consensus Membrane protein HUEL (cation efflux sup 99.83
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 98.58
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 98.28
TIGR01297268 CDF cation diffusion facilitator family transporte 98.24
PRK03557312 zinc transporter ZitB; Provisional 97.58
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 96.37
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 95.12
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 94.35
COG1230296 CzcD Co/Zn/Cd efflux system component [Inorganic i 92.74
PF03780108 Asp23: Asp23 family; InterPro: IPR005531 This entr 92.65
PF09580177 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ 90.27
TIGR02898158 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ 89.18
TIGR03406174 FeS_long_SufT probable FeS assembly SUF system pro 87.36
COG4858226 Uncharacterized membrane-bound protein conserved i 87.17
PF0188372 DUF59: Domain of unknown function DUF59; InterPro: 86.54
PRK0578384 hypothetical protein; Provisional 85.95
TIGR0294599 SUF_assoc FeS assembly SUF system protein. Members 84.58
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 83.53
PF0103774 AsnC_trans_reg: AsnC family; InterPro: IPR019887 T 81.29
KOG1484 354 consensus Putative Zn2+ transporter MSC2 (cation d 80.39
PF0270080 PurS: Phosphoribosylformylglycinamidine (FGAM) syn 80.34
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-55  Score=387.68  Aligned_cols=277  Identities=26%  Similarity=0.410  Sum_probs=257.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609            2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL   81 (294)
Q Consensus         2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~   81 (294)
                      ++|++.|+++++.|+++|+.+||.||+|||+||++|++++++.+++.+.++||+|++|||||+|+|++++++.++++++.
T Consensus        16 ~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~   95 (304)
T COG0053          16 LISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAA   95 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----hcchhhhhhhhhhhhhHHHHHHHHHHH
Q 022609           82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVGLVAA  157 (294)
Q Consensus        82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~l~a~~~~~~~d~~~s~~~~i~~  157 (294)
                      |+.++++++.++++|.+.+     ...+++++++++.+++.+++++.++    .+++.+++++.|.++|.+++++++++.
T Consensus        96 g~~i~~~a~~~~~~~~~~~-----~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl  170 (304)
T COG0053          96 GFEILLEAIKRLISPQPVE-----PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGL  170 (304)
T ss_pred             HHHHHHHHHHHHhCCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999977764     3578899999999999999998865    458899999999999999999888776


Q ss_pred             HHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEE
Q 022609          158 VLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD  237 (294)
Q Consensus       158 ~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~  237 (294)
                      .....+|+|+||++++++++++++.+++++|++...|+|+.+|++..+++++.+.+.|+|.++|++|.|+.|+.+++++|
T Consensus       171 ~~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~  250 (304)
T COG0053         171 LGSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVH  250 (304)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEE
Confidence            63334589999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCChhHHHHHHHHHHHHHhc-CCCcceEEEEeeccCCCCCcc
Q 022609          238 IELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDHKPEH  283 (294)
Q Consensus       238 i~v~~~~~v~~~~~i~~~i~~~l~~-~~~v~~v~i~~ep~~~~~~~~  283 (294)
                      +++|+++|++|+|++++++++++++ .+.+.+++||+||......+.
T Consensus       251 i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~~  297 (304)
T COG0053         251 IEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEEK  297 (304)
T ss_pred             EEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccccccc
Confidence            9999999999999999999999986 444999999999986555443

>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only] Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family Back     alignment and domain information
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis Back     alignment and domain information
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family Back     alignment and domain information
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function Back     alignment and domain information
>PRK05783 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02945 SUF_assoc FeS assembly SUF system protein Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
2qfi_A300 Structure Of The Zinc Transporter Yiip Length = 300 2e-07
3h90_A283 Structural Basis For The Autoregulation Of The Zinc 2e-07
3j1z_P306 Inward-facing Conformation Of The Zinc Transporter 1e-06
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip Length = 300 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/276 (19%), Positives = 117/276 (42%), Gaps = 23/276 (8%)
Query: 10  VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 61
           +LL  KIFA   +GS++I A+ +DSL+D+ A         ++ N+ + +Y +        
Sbjct: 22  LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 72
Query: 62  -GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 120
            G  + + +  +  +  ++     + +  ++ L+   P        +  + +++    +V
Sbjct: 73  FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 132
Query: 121 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWW--IDPAGAILLAVY 178
               W+  + + ++ VRA    +  D               S+Y W   D   A+ + +Y
Sbjct: 133 SFQRWV-VRRTQSQAVRADMLHYQSDVMMNGAILLALGL--SWYGWHRADALFALGIGIY 189
Query: 179 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDI 238
            + +      E   SL+ ++ P E  Q++  +V   P V     +R    G   F+++ +
Sbjct: 190 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHL 249
Query: 239 ELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274
           E+ + LPL +AH + + ++  I +        +H D
Sbjct: 250 EMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 285
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc Transporter Yiip Length = 283 Back     alignment and structure
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip Revealed By Cryo-electron Microscopy Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 2e-42
2zzt_A107 Putative uncharacterized protein; cation diffusion 1e-15
3byp_A94 CZRB protein; membrane protein, zinc transporter, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283 Back     alignment and structure
 Score =  146 bits (371), Expect = 2e-42
 Identities = 55/277 (19%), Positives = 116/277 (41%), Gaps = 11/277 (3%)

Query: 3   ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGI-LWFTHVAMKNINIYKYPI 61
            +     +LL  KIFA   +GS++I A+ +DSL+D+ A    L     +++  +   +  
Sbjct: 8   AATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD-DNHSF 66

Query: 62  GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVK 121
           G  + + +  +  +  ++     + +  ++ L+   P              + I A +  
Sbjct: 67  GHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-----DPGVGVIVTIVALICT 121

Query: 122 LALWIYCKSSGNKI----VRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAV 177
           + L  + +    +     VRA    +  DV+ N   L+A  L    +   D   A+ + +
Sbjct: 122 IILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGI 181

Query: 178 YTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD 237
           Y + +      E   SL+ ++ P E  Q++  +V   P V     +R    G   F+++ 
Sbjct: 182 YILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIH 241

Query: 238 IELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 274
           +E+ + LPL +AH + + ++  I +        +H D
Sbjct: 242 LEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Length = 107 Back     alignment and structure
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Length = 94 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
3j1z_P306 YIIP, cation efflux family protein; zinc transport 100.0
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 100.0
3byp_A94 CZRB protein; membrane protein, zinc transporter, 99.67
2zzt_A107 Putative uncharacterized protein; cation diffusion 99.6
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 97.59
3j1z_P306 YIIP, cation efflux family protein; zinc transport 97.56
2jsx_A95 Protein NAPD; TAT, proofreading, cytoplasm, chaper 87.15
3cq1_A103 Putative uncharacterized protein TTHB138; DTDP-4-k 84.05
3lno_A108 Putative uncharacterized protein; alpha-beta fold, 83.59
1uwd_A103 Hypothetical protein TM0487; similar to PAAD prote 80.29
2cvi_A83 75AA long hypothetical regulatory protein ASNC; st 80.09
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
Probab=100.00  E-value=2.7e-56  Score=396.88  Aligned_cols=277  Identities=22%  Similarity=0.269  Sum_probs=254.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHHH
Q 022609            2 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL   81 (294)
Q Consensus         2 ~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~~   81 (294)
                      ++++++|++++++|+++|+.+||.||+|||+||++|+++.++++++.+.++||+|++|||||+|+|+++++++++++++.
T Consensus        16 ~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~   95 (306)
T 3j1z_P           16 RASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGS   95 (306)
T ss_dssp             HHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhhhhhhhhhhhhHHHHHHHHHHH
Q 022609           82 GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS----GNKIVRAYAKDHYFDVVTNVVGLVAA  157 (294)
Q Consensus        82 ~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~l~a~~~~~~~d~~~s~~~~i~~  157 (294)
                      |+.+++++++++++|++.+     ...+++++++++++++..++++.++.    +|+++++++.|.+.|.++|++++++.
T Consensus        96 ~~~i~~eai~~l~~p~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~  170 (306)
T 3j1z_P           96 AFLLLFYGGERLLNPSPVE-----NATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLAL  170 (306)
T ss_dssp             HHHHHHHHHHTTTTTCCGG-----GTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHhhhheecCCCcc-----ccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHH
Confidence            9999999999999998764     23556777888899998888877653    47899999999999999999777765


Q ss_pred             HHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHcCCCcceeeEEEEEEeCCeEEEEEE
Q 022609          158 VLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVD  237 (294)
Q Consensus       158 ~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~~~~~~~g~~~~v~~~  237 (294)
                      ++..++|+|+||++++++++++++.+++++|++...|+|+++|++..++|++.+++.|+|.++|++|+|+.|+++++++|
T Consensus       171 ~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~h  250 (306)
T 3j1z_P          171 VLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFH  250 (306)
T ss_dssp             SSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEEC
T ss_pred             HHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEE
Confidence            55555699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCChhHHHHHHHHHHHHHhcCCCcceEEEEeeccCCCCCcc
Q 022609          238 IELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEH  283 (294)
Q Consensus       238 i~v~~~~~v~~~~~i~~~i~~~l~~~~~v~~v~i~~ep~~~~~~~~  283 (294)
                      +++|+++|++|+|++.+++|+++++.+++.+++||+||...+++++
T Consensus       251 i~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~ePt~~  296 (306)
T 3j1z_P          251 LELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTTQ  296 (306)
T ss_dssp             CEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTSCCCCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCcc
Confidence            9999999999999999999999987667889999999987665443
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Back     alignment and structure
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Back     alignment and structure
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Back     alignment and structure
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* Back     alignment and structure
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0 Back     alignment and structure
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A Back     alignment and structure
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d2qfia2204 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF { 1e-22
d2qfia182 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF 5e-22
d3bypa182 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB { 6e-18
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

 Score = 91.0 bits (225), Expect = 1e-22
 Identities = 35/195 (17%), Positives = 76/195 (38%), Gaps = 1/195 (0%)

Query: 3   ISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIG 62
            +     +LL  KIFA   +GS++I A+ +DSL+D+ A                  +  G
Sbjct: 11  AATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFG 70

Query: 63  KLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKL 122
             + + +  +  +  ++     + +  ++ L+   P      V +      +I   ++  
Sbjct: 71  HGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPM-TDPGVGVIVTIVALICTIILVS 129

Query: 123 ALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITN 182
                 + + ++ VRA    +  DV+ N   L+A  L    +   D   A+ + +Y + +
Sbjct: 130 FQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYS 189

Query: 183 WSETVMENAVSLVGQ 197
                 E   SL+ +
Sbjct: 190 ALRMGYEAVQSLLDR 204
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82 Back     information, alignment and structure
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 99.96
d3bypa182 Putative Zinc transporter CzrB {Thermus thermophil 99.63
d2qfia182 Ferrous-iron efflux pump FieF (YiiP) {Escherichia 99.59
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 93.96
d2cu6a191 Hypothetical protein TTHB138 {Thermus thermophilus 90.99
d1i1ga280 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 84.93
d2cg4a286 Regulatory protein AsnC {Escherichia coli [TaxId: 82.48
d1uwda_102 Hypothetical protein TM0487 {Thermotoga maritima [ 81.52
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.9e-37  Score=254.60  Aligned_cols=192  Identities=19%  Similarity=0.143  Sum_probs=168.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHhHHHHHHHHHHHH
Q 022609            1 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMAT   80 (294)
Q Consensus         1 ~~is~~~~l~~~~~~~~~~~~~~S~allada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~E~l~~l~~~~~l~~   80 (294)
                      +++++++|+++++.|+++|+.+||.++++||+|++.|+++.++++++.+.++||+|++|||||+|.|+++++++++++++
T Consensus         9 ~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~   88 (204)
T d2qfia2           9 AIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISG   88 (204)
T ss_dssp             SHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTTTTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH----HHhcchhhhhhhhhhhhhHHHHHHHHHH
Q 022609           81 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYC----KSSGNKIVRAYAKDHYFDVVTNVVGLVA  156 (294)
Q Consensus        81 ~~~~i~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~l~a~~~~~~~d~~~s~~~~i~  156 (294)
                      .++.++.++++++++|++...     ..+++.+++++.+++..++++.    ||.+|+++++++.|++.|.+++.+++++
T Consensus        89 ~~~~~~~~si~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s~~vii~  163 (204)
T d2qfia2          89 SALFLFLTGIQHLISPTPMTD-----PGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLA  163 (204)
T ss_dssp             STTGGGSSCTTSSTTTSSSST-----TTSCCCCCGGGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHTCCSSTTCCC
T ss_pred             HHHHHHHHHHHHHHhcccccc-----cHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876643     3344455556666666554444    4556889999999999999999876665


Q ss_pred             HHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022609          157 AVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQ  197 (294)
Q Consensus       157 ~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~~~~~Ll~~  197 (294)
                      ..+....|+|+||++++++++++++.+++++|++.+.|+|+
T Consensus       164 ~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~  204 (204)
T d2qfia2         164 LGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR  204 (204)
T ss_dssp             TTSSCSSTTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred             HHHHHhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            55555558999999999999999999999999999999985
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure