Citrus Sinensis ID: 022611

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----

MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccc

cccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEccHHcccHccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc

maaatlsvrpnrlspgsqiprppavhhlnptchptplkptkselfRGLTSLSRRTLAASGvakagsraddsapfEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQrragkvvdssiryadvnpvgtpgmgpmpqwlQTSLKKstvsvenpstgdlgiqaGVYGALMVLTYVngtstssiapyagadvpglILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQvdivpflgihspaAVVSEFILFSQFLVSLYLR

maaatlsvrpnrlspgsqiprppavhhlnptchptplkPTKSELFRGLTSLSRRTLaasgvakagsraddsapfEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQrragkvvdssirYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKaavitigglvagavvgsavENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

*******************************************************************************NALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPV****************************GDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYL*

********************************************************************************ALKLLGVSETASFDEILRAKNSIVANCKD*QEAIAQVEAAYDMLLM**************************************SLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

************LSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRR******************PFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTS**********PSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

*********PNRLSPGSQIPRPPAVHHLNPTCHPTPLKP*KSELFRGLTSLSR*TLAAS*************PFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADVN******MGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
255560509		293	conserved hypothetical protein [Ricinus	0.993	0.996	0.752	1e-120
224103153		289	predicted protein [Populus trichocarpa]	0.952	0.968	0.753	1e-115
225428078		291	PREDICTED: uncharacterized protein LOC10	0.972	0.982	0.739	1e-114
356575460		280	PREDICTED: uncharacterized protein LOC10	0.948	0.996	0.738	1e-111
356536390		280	PREDICTED: uncharacterized protein LOC10	0.948	0.996	0.728	1e-110
297744582		219	unnamed protein product [Vitis vinifera]	0.744	1.0	0.844	1e-103
449458636		287	PREDICTED: uncharacterized protein LOC10	0.955	0.979	0.686	1e-102
217071890		287	unknown [Medicago truncatula] gi\|3885226	0.969	0.993	0.699	1e-100
297821285		287	hypothetical protein ARALYDRAFT_480941 [	0.945	0.968	0.676	1e-94
15226418		287	uncharacterized protein [Arabidopsis tha	0.942	0.965	0.664	3e-93

>gi\|255560509\|ref\|XP_002521269.1\| conserved hypothetical protein [Ricinus communis] gi\|223539537\|gb\|EEF41125.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/295 (75%), Positives = 247/295 (83%), Gaps = 3/295 (1%)

Query: 1   MAAATLSVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSRRTLAASG 60
           MAAA LSVRPN LS  S  PRPP       T   T L+  K E +R     SRR  +  G
Sbjct: 1   MAAAPLSVRPNSLSSNSAFPRPPTAP--TSTTISTQLQSIKKEPWRLTILPSRRYFSGKG 58

Query: 61  V-AKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEA 119
             A+A SRADDSAPFEMSVENALKLLGVSE ASFD+ILRAK SI+A+CKDDQEA+AQVEA
Sbjct: 59  ARARASSRADDSAPFEMSVENALKLLGVSEGASFDDILRAKKSILASCKDDQEAVAQVEA 118

Query: 120 AYDMLLMRSLTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTG 179
           AYDMLLM+SLTQRRAGKV +S IRYADV P+  PGMG +PQWLQ ++KK+ VSVE PSTG
Sbjct: 119 AYDMLLMQSLTQRRAGKVANSDIRYADVKPINGPGMGSVPQWLQATMKKTPVSVETPSTG 178

Query: 180 DLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKA 239
           DLGI+AGVYGA+MVLTYVNG S+ S+APYAGADVPGLILA++FGASLYF+T+KNVKLGKA
Sbjct: 179 DLGIRAGVYGAMMVLTYVNGASSISVAPYAGADVPGLILATTFGASLYFLTKKNVKLGKA 238

Query: 240 AVITIGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR 294
            +IT+GGL AGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR
Sbjct: 239 TLITLGGLAAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYLR 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224103153\|ref\|XP_002312946.1\| predicted protein [Populus trichocarpa] gi\|222849354\|gb\|EEE86901.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225428078\|ref\|XP_002278026.1\| PREDICTED: uncharacterized protein LOC100265837 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356575460\|ref\|XP_003555859.1\| PREDICTED: uncharacterized protein LOC100794285 [Glycine max]	Back alignment and taxonomy information

>gi\|356536390\|ref\|XP_003536721.1\| PREDICTED: uncharacterized protein LOC100790896 [Glycine max]	Back alignment and taxonomy information

>gi\|297744582\|emb\|CBI37844.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449458636\|ref\|XP_004147053.1\| PREDICTED: uncharacterized protein LOC101221865 [Cucumis sativus] gi\|449518109\|ref\|XP_004166086.1\| PREDICTED: uncharacterized LOC101221865 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|217071890\|gb\|ACJ84305.1\| unknown [Medicago truncatula] gi\|388522647\|gb\|AFK49385.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297821285\|ref\|XP_002878525.1\| hypothetical protein ARALYDRAFT_480941 [Arabidopsis lyrata subsp. lyrata] gi\|297324364\|gb\|EFH54784.1\| hypothetical protein ARALYDRAFT_480941 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15226418\|ref\|NP_179688.1\| uncharacterized protein [Arabidopsis thaliana] gi\|4454458\|gb\|AAD20905.1\| unknown protein [Arabidopsis thaliana] gi\|17978972\|gb\|AAL47447.1\| At2g20920/F5H14.11 [Arabidopsis thaliana] gi\|21700805\|gb\|AAM70526.1\| At2g20920/F5H14.11 [Arabidopsis thaliana] gi\|330252003\|gb\|AEC07097.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
TAIR\|locus:2051462		287	AT2G20920 [Arabidopsis thalian	0.942	0.965	0.615	1.4e-78
TAIR\|locus:2080883		278	AT3G51140 "AT3G51140" [Arabido	0.278	0.294	0.305	0.00035

TAIR\|locus:2051462 AT2G20920 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 187/304 (61%), Positives = 214/304 (70%)

Query:     1 MAAATLSV-RPNRLSPGSQ-IPRPPAVHHLNPTCHPTPLK-PT-KSELFRGLTSL--SRR 54
             MA A LS  RPNRLS  S  +P       L+P   PT L+ P+ K++L+R    L  +RR
Sbjct:     1 MATAALSAARPNRLSSASSDVP-------LHPLYLPTKLQFPSRKTQLWRSAAILLPTRR 53

Query:    55 TLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAI 114
               A     +A SRADDS PF+MSVE ALK+LGVSE ASFDEILRAK SI+A+ KDD  AI
Sbjct:    54 RCAPP---RASSRADDSPPFDMSVETALKVLGVSEGASFDEILRAKKSILASRKDDPNAI 110

Query:   115 AQVEAAYDMLLMRSLTQRRAGKVVDSSIRYADV---NPVGTPGMGPMPQWLQTSLKKSTV 171
             +Q EAAYDMLLM+SL QRRAGKVV ++IRYADV   NP+GT     + QW+    K   V
Sbjct:   111 SQAEAAYDMLLMQSLNQRRAGKVVSNNIRYADVKSSNPLGT---STVTQWM----KNPPV 163

Query:   172 SVENPSTGDLGIQAGVYGALMVLTYVNGTS-TSSIAPYAGADVPGLILASSFGASLYFMT 230
             SV+ PST DLGIQAGVYGA+MVLTYVNG+S  SS  PYAGADVPGLILASSFGASLYFMT
Sbjct:   164 SVDMPSTSDLGIQAGVYGAMMVLTYVNGSSFESSGMPYAGADVPGLILASSFGASLYFMT 223

Query:   231 RKNVKLGKXXXXXXXXXXXXXXXXXXXENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVS 290
             +K VKLGK                   E WL VD+VPFLG+HSPAAVVSEFI+FSQFLVS
Sbjct:   224 KKKVKLGKAAALTAGGLVAGAVVGSAIETWLHVDVVPFLGLHSPAAVVSEFIVFSQFLVS 283

Query:   291 LYLR 294
             L LR
Sbjct:   284 LCLR 287

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR\|locus:2080883 AT3G51140 "AT3G51140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_IX0151	hypothetical protein (290 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.1884.1.1	annotation not avaliable (196 aa)	•		•	0.534
	eugene3.00061626	hypothetical protein (259 aa)	•	•		0.522
	gw1.XIV.3174.1	hypothetical protein (202 aa)	•			0.506
	gw1.X.3026.1	hypothetical protein (245 aa)	•			0.506
	gw1.V.1611.1	hypothetical protein (733 aa)	•			0.506
	estExt_fgenesh4_pg.C_LG_X1887	hypothetical protein (235 aa)	•			0.506
	estExt_Genewise1_v1.C_LG_XIII0363	hypothetical protein (158 aa)	•			0.506
	estExt_Genewise1_v1.C_LG_VIII0078	hypothetical protein (95 aa)	•			0.506
	gw1.XV.3343.1	annotation not avaliable (57 aa)	•			0.504
	gw1.422.22.1	annotation not avaliable (198 aa)	•			0.504

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		294
pfam11833		193	pfam11833, DUF3353, Protein of unknown function (D	5e-57

>gnl\|CDD\|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353)	Back alignment and domain information

 Score =  181 bits (461), Expect = 5e-57
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 19/209 (9%)

Query: 88  SETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV-VDSSIRYAD 146
           SE ASF+EI  A+N ++A    D++A A++EAAYD +LM+ L +R+ GK+ V  +IRYA+
Sbjct: 1   SEDASFEEIQAARNRLLAEYAGDEQARAKIEAAYDAILMQRLRERQEGKIKVPEAIRYAE 60

Query: 147 VNPVGTPGMG--PMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSS 204
                       P P WLQ    +   S + PS   L I+  ++G L +L  + G     
Sbjct: 61  RAGKPAASKPVNPSPAWLQ----RLLPSFDLPSGQGLLIRLVLFGLLALLLLLQGP---- 112

Query: 205 IAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVITIGGLVAGAVVGSAVENWLQVD 264
                    P L LA   GA +YF+ RK  + G+A + ++GGLV G ++GS +   L   
Sbjct: 113 ------PSGPQLQLALGTGACIYFLNRKGRRFGRALLWSLGGLVVGLLLGSLLAVLLPPF 166

Query: 265 IVPFLGIHSPAAVVSEFILFSQFLVSLYL 293
           I+P  G  SP  + S       +L SL+L
Sbjct: 167 ILP--GSLSPEQIQSLPAYLLLWLGSLFL 193

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		294
PF11833		194	DUF3353: Protein of unknown function (DUF3353); In	100.0
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	99.21
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.05
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	99.05
PTZ00100		116	DnaJ chaperone protein; Provisional	99.05
KOG0713		336	consensus Molecular chaperone (DnaJ superfamily) [	99.03
PRK14296		372	chaperone protein DnaJ; Provisional	99.03
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	99.01
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	98.99
PRK14288		369	chaperone protein DnaJ; Provisional	98.98
PRK14299		291	chaperone protein DnaJ; Provisional	98.98
PRK14276		380	chaperone protein DnaJ; Provisional	98.98
PRK14286		372	chaperone protein DnaJ; Provisional	98.97
PTZ00037		421	DnaJ_C chaperone protein; Provisional	98.96
PRK14282		369	chaperone protein DnaJ; Provisional	98.95
PRK14287		371	chaperone protein DnaJ; Provisional	98.95
KOG0721		230	consensus Molecular chaperone (DnaJ superfamily) [	98.95
PRK14280		376	chaperone protein DnaJ; Provisional	98.93
PRK10767		371	chaperone protein DnaJ; Provisional	98.91
PRK14283		378	chaperone protein DnaJ; Provisional	98.91
PRK14279		392	chaperone protein DnaJ; Provisional	98.9
PRK14300		372	chaperone protein DnaJ; Provisional	98.9
PRK14294		366	chaperone protein DnaJ; Provisional	98.88
PRK14295		389	chaperone protein DnaJ; Provisional	98.88
PRK14285		365	chaperone protein DnaJ; Provisional	98.87
PRK14297		380	chaperone protein DnaJ; Provisional	98.86
PRK14301		373	chaperone protein DnaJ; Provisional	98.86
PRK14298		377	chaperone protein DnaJ; Provisional	98.86
PRK14277		386	chaperone protein DnaJ; Provisional	98.85
PRK10266		306	curved DNA-binding protein CbpA; Provisional	98.85
PRK14278		378	chaperone protein DnaJ; Provisional	98.84
PRK14291		382	chaperone protein DnaJ; Provisional	98.82
PRK14289		386	chaperone protein DnaJ; Provisional	98.81
PRK14281		397	chaperone protein DnaJ; Provisional	98.81
PRK14284		391	chaperone protein DnaJ; Provisional	98.73
PRK14290		365	chaperone protein DnaJ; Provisional	98.72
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	98.72
PRK14293		374	chaperone protein DnaJ; Provisional	98.7
KOG0715		288	consensus Molecular chaperone (DnaJ superfamily) [	98.69
PRK14292		371	chaperone protein DnaJ; Provisional	98.67
PHA03102		153	Small T antigen; Reviewed	98.63
KOG0712		337	consensus Molecular chaperone (DnaJ superfamily) [	98.57
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	98.56
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	98.31
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	98.31
KOG0719		264	consensus Molecular chaperone (DnaJ superfamily) [	98.26
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	98.26
KOG0691		296	consensus Molecular chaperone (DnaJ superfamily) [	98.19
PHA02624		647	large T antigen; Provisional	98.15
KOG0716		279	consensus Molecular chaperone (DnaJ superfamily) [	98.14
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.13
KOG0718		546	consensus Molecular chaperone (DnaJ superfamily) [	98.1
PRK05014		171	hscB co-chaperone HscB; Provisional	97.97
PRK01356		166	hscB co-chaperone HscB; Provisional	97.77
PRK00294		173	hscB co-chaperone HscB; Provisional	97.74
PRK03578		176	hscB co-chaperone HscB; Provisional	97.73
KOG0723		112	consensus Molecular chaperone (DnaJ superfamily) [	97.63
KOG0568		342	consensus Molecular chaperone (DnaJ superfamily) [	97.62
KOG0722		329	consensus Molecular chaperone (DnaJ superfamily) [	97.58
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	97.51
KOG0720		490	consensus Molecular chaperone (DnaJ superfamily) [	97.5
PF13446		62	RPT: A repeated domain in UCH-protein	97.16
KOG0714		306	consensus Molecular chaperone (DnaJ superfamily) [	97.09
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.06
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	96.69
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	96.63
KOG1150		250	consensus Predicted molecular chaperone (DnaJ supe	96.35
PRK01773		173	hscB co-chaperone HscB; Provisional	95.96
PF03656		127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	95.82
TIGR00714		157	hscB Fe-S protein assembly co-chaperone HscB. This	93.57
PF06570		206	DUF1129: Protein of unknown function (DUF1129); In	92.39
COG5269		379	ZUO1 Ribosome-associated chaperone zuotin [Transla	91.9
COG4858		226	Uncharacterized membrane-bound protein conserved i	88.83
PF04341		91	DUF485: Protein of unknown function, DUF485; Inter	84.54
PRK10263		1355	DNA translocase FtsK; Provisional	80.52

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised	Back alignment and domain information

Probab=100.00  E-value=1.6e-59  Score=418.94  Aligned_cols=190  Identities=46%  Similarity=0.735  Sum_probs=178.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccccccccC---CCCCCCCCCCCChHHH
Q 022611           88 SETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV-VDSSIRYADV---NPVGTPGMGPMPQWLQ  163 (294)
Q Consensus        88 s~~AS~eEIq~Ar~~l~~~y~~D~~~~~~IEaAYD~Ilm~~L~~Rq~GKi-v~~~IRyAd~---~~~~~~~~~~~P~Wlq  163 (294)
                      ||||||||||+|||++++||++|++++++||+|||+|||+||++||+||| |+++|||+|+   ++..+.+.++.|+|+|
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~   80 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ   80 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence            68999999999999999999999999999999999999999999999999 9999999999   3344444477899988


Q ss_pred             HhhhhCCceecCCCccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHhhhhhhhhhhhhhhhHHHHHHH
Q 022611          164 TSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGKAAVIT  243 (294)
Q Consensus       164 ~~lk~l~~~~~~Ps~~~L~~~a~if~~L~~~t~~~g~s~~~~~~~~~~~~p~L~LAls~~a~iYfL~rK~k~lgRA~ll~  243 (294)
                      ++    .++||+|++++|.+++++|++|++|+++++.          +++|+|+||+|+++||||||||+++||||++++
T Consensus        81 ~~----~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~----------~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~  146 (194)
T PF11833_consen   81 RL----LPSFDTPSSQDLLIRAAAFGALGLWSLLFPA----------ASGPGLQLALGLGACIYFLNRKERKLGRAFLWT  146 (194)
T ss_pred             hc----ccceeCCCcchHHHHHHHHHHHHHHHHHHcC----------CCCcchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            75    7889999999999999999999999999732          689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHHHHHHHHHHHHhhhc
Q 022611          244 IGGLVAGAVVGSAVENWLQVDIVPFLGIHSPAAVVSEFILFSQFLVSLYL  293 (294)
Q Consensus       244 ~ggLv~G~llGs~l~~~l~v~ivP~~~i~sp~~~vs~~~~~~lwlvssfL  293 (294)
                      +++|++||++|+++++|+.++++|  +..+||+++++++|++||++|+||
T Consensus       147 ~~~L~~G~~lGs~l~~~l~~~~~p--~~~s~~~~~sl~~~i~lwl~s~fL  194 (194)
T PF11833_consen  147 LGGLVVGLILGSLLASWLPVDIVP--GPWSPEQLVSLFTYILLWLVSLFL  194 (194)
T ss_pred             HHHHHHHHHHHHHHHhhcccccCC--CCCCHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999  677999999999999999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02624 large T antigen; Provisional	Back alignment and domain information

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13446 RPT: A repeated domain in UCH-protein	Back alignment and domain information

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []	Back alignment and domain information

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues	Back alignment and domain information

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins	Back alignment and domain information

>PRK10263 DNA translocase FtsK; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		294
2guz_A		71	Mitochondrial import inner membrane translocase su	3e-04

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71	Back alignment and structure

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 75  EMSVENALKLLGVSETA-SFDEILRA-KNSIVANCKD---DQEAIAQVEAAYDMLLMRSL 129
           +M+ + AL++L ++E   +  ++    +  ++AN  D         ++  A D L  R +
Sbjct: 10  KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGI 69

Query: 130 TQ 131
           ++
Sbjct: 70  SK 71

PyMOL of 2guz

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		294
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	99.31
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	99.27
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.26
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.25
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.24
2guz_A		71	Mitochondrial import inner membrane translocase su	99.24
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	99.22
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	99.21
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	99.18
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.18
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.18
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.17
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	99.14
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.11
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.11
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	99.09
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	99.08
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.04
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.02
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	98.96
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	98.94
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.89
2guz_B		65	Mitochondrial import inner membrane translocase su	98.86
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	98.84
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	98.84
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	98.78
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	98.72
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	98.64
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	98.58
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	98.57
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	98.54
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	98.44
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	98.39
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	98.14
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	96.03
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	81.01

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

Probab=99.31  E-value=4.1e-12  Score=100.35  Aligned_cols=64  Identities=23%  Similarity=0.243  Sum_probs=55.7

Q ss_pred             CCCCCCCCCccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHH
Q 022611           69 DDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQR  132 (294)
Q Consensus        69 ~~~~pf~m~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------~~~~~IEaAYD~Ilm~~L~~R  132 (294)
                      .++....|+..|+|++|||+++|+.+||++||++|..+||+|.        +.+.+|+.||++|.....|+.
T Consensus         7 ~~~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~   78 (99)
T 2yua_A            7 GSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK   78 (99)
T ss_dssp             CCCCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             CCCCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            3344457889999999999999999999999999999999873        588999999999998876654

PyMOL of 2yua

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		294
d1iura_		88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-04

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88	Back information, alignment and structure


class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 5/70 (7%), Positives = 18/70 (25%), Gaps = 9/70 (12%)

Query: 72  APFEMSVENALKLLGVSETASFDEILRA---------KNSIVANCKDDQEAIAQVEAAYD 122
            P    ++    ++  +      E  +           +    N     E    ++   +
Sbjct: 9   VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

Query: 123 MLLMRSLTQR 132
            L  ++   +
Sbjct: 69  RLEKQAFLDQ 78

PyMOL of d1iura_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		294
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	99.15
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.11
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	99.07
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	98.9
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	98.88
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	98.75
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	98.47

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1e-11  Score=96.39  Aligned_cols=54  Identities=11%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             CccchhhhhCCCCCCCHHHHHHHHHHHHHHcCCCH--------------HHHHHHHHHHHHHHHHHHH
Q 022611           77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------------EAIAQVEAAYDMLLMRSLT  130 (294)
Q Consensus        77 ~~~dpYevLGVs~~AS~eEIq~Ar~~l~~~y~~D~--------------~~~~~IEaAYD~Ilm~~L~  130 (294)
                      ..+|+|++|||+++||++||++||++|..+||+|.              +.+..|++||+.|.....|
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R   81 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK   81 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            45799999999999999999999999999999983              4578999999999764333

PyMOL of d1wjza_

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure