Citrus Sinensis ID: 022648

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
cHHHHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccEEEccHHHHHHHHHHHHcccccccccccccEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEcccccHHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHccccccEEEEEccccccHHHcEEccccEccEEEEccHHHHHHHHcccccEEEccccccccEEcccEEEEEcccccEEEEEEEEEEHHHcEEEEEEEccccccHHHHHHHcHHHcEEEEcEcccEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEcEEEcccccEEEEEcEcccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYginvpkglavASVDEVKKAIQDAFPDHKELVVKSQIlaggrglgtfksglkggvhivKKEEVEDLAGKMLGQILVtkqtgpqgkivSKVYLCEKLSLVNEMYFAIMLDrktagpiiigcskggtsiedLAEKYPNMIVKVPidvfngitdedaakvvdglapkvadrnDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
mvrgllnklvsrsltvagqwqqqqLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQdafpdhkelVVKSQILaggrglgtfksglkggvHIVKKEEVEDLAGKMLGQILVtkqtgpqgkivSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHlvggslcivlllllfslvdvlvWIFFLFWVRSIL
*****LNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRS**
************************LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
*VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
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MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVGGQVELVIHLVGGSLCIVLLLLLFSLVDVLVWIFFLFWVRSIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
O82662 421 Succinyl-CoA ligase [ADP- yes no 0.792 0.553 0.806 1e-113
Q6K9N6 422 Succinyl-CoA ligase [ADP- yes no 0.795 0.554 0.811 1e-112
Q84LB6 417 Succinyl-CoA ligase [ADP- N/A no 0.782 0.551 0.804 1e-111
Q55AI5 445 Succinyl-CoA ligase [ADP- yes no 0.710 0.469 0.448 3e-46
Q148D5 463 Succinyl-CoA ligase [ADP- yes no 0.772 0.490 0.421 1e-43
O97580 425 Succinyl-CoA ligase [ADP- yes no 0.744 0.515 0.429 5e-43
Q9YI37 413 Succinyl-CoA ligase [ADP- N/A no 0.751 0.535 0.406 7e-43
Q9P567 447 Probable succinyl-CoA lig N/A no 0.748 0.492 0.422 2e-42
Q9P2R7 463 Succinyl-CoA ligase [ADP- yes no 0.741 0.470 0.426 3e-42
Q9Z2I9 463 Succinyl-CoA ligase [ADP- yes no 0.741 0.470 0.431 4e-42
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1 Back     alignment and function desciption
 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/233 (80%), Positives = 220/233 (94%)

Query: 2   VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
           +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA
Sbjct: 1   MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query: 62  IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121
           IQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQT
Sbjct: 61  IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query: 122 GPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181
           GPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+K
Sbjct: 121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query: 182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVS 234
           VPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LE++
Sbjct: 181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEIN 233

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5
>sp|Q6K9N6|SUCB_ORYSJ Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1 Back     alignment and function description
>sp|Q84LB6|SUCB_SOLLC Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1 Back     alignment and function description
>sp|Q55AI5|SUCB1_DICDI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1 Back     alignment and function description
>sp|Q148D5|SUCB1_BOVIN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1 Back     alignment and function description
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1 Back     alignment and function description
>sp|Q9YI37|SUCB1_COLLI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Columba livia GN=SUCLA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B9J10.140 PE=3 SV=1 Back     alignment and function description
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
TAIR|locus:2039037 421 AT2G20420 [Arabidopsis thalian 0.792 0.553 0.806 1.1e-101
UNIPROTKB|Q84LB6 417 Q84LB6 "Succinyl-CoA ligase [A 0.782 0.551 0.804 1.2e-99
UNIPROTKB|Q5F3B9 463 SUCLA2 "Uncharacterized protei 0.765 0.485 0.439 3e-46
UNIPROTKB|F1RK10 463 SUCLA2 "Succinyl-CoA ligase [A 0.765 0.485 0.439 1.2e-44
UNIPROTKB|O97580 425 SUCLA2 "Succinyl-CoA ligase [A 0.765 0.529 0.439 1.2e-44
ZFIN|ZDB-GENE-040426-1963 466 sucla2 "succinate-CoA ligase, 0.758 0.478 0.429 1.2e-44
DICTYBASE|DDB_G0271842 445 scsC "succinate-CoA ligase (AD 0.710 0.469 0.452 1.5e-44
UNIPROTKB|Q9P2R7 463 SUCLA2 "Succinyl-CoA ligase [A 0.765 0.485 0.435 5e-44
MGI|MGI:1306775 463 Sucla2 "succinate-Coenzyme A l 0.765 0.485 0.439 8.1e-44
RGD|1309397 437 Sucla2 "succinate-CoA ligase, 0.721 0.485 0.447 8.1e-44
TAIR|locus:2039037 AT2G20420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 188/233 (80%), Positives = 220/233 (94%)

Query:     2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
             +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA
Sbjct:     1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query:    62 IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121
             IQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQT
Sbjct:    61 IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query:   122 GPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181
             GPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+K
Sbjct:   121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query:   182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVS 234
             VPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LE++
Sbjct:   181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEIN 233
GO:0003824 "catalytic activity" evidence=IEA
GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA;IDA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016874 "ligase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
UNIPROTKB|Q84LB6 Q84LB6 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3B9 SUCLA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK10 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O97580 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1963 sucla2 "succinate-CoA ligase, ADP-forming, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271842 scsC "succinate-CoA ligase (ADP-forming)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2R7 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1306775 Sucla2 "succinate-Coenzyme A ligase, ADP-forming, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309397 Sucla2 "succinate-CoA ligase, ADP-forming, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O82662SUCB_ARATH6, ., 2, ., 1, ., 50.80680.79250.5534yesno
Q6K9N6SUCB_ORYSJ6, ., 2, ., 1, ., 50.81190.79590.5545yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.921
4th Layer6.2.1.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028552001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotgun sequence); (423 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00031891001
SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (329 aa)
••••••• 0.999
GSVIVG00037069001
SubName- Full=Chromosome chr17 scaffold_85, whole genome shotgun sequence; (336 aa)
••••••• 0.999
GSVIVG00024946001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (528 aa)
•  •••• 0.999
GSVIVG00020593001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (276 aa)
•  • •• 0.997
GSVIVG00018534001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (973 aa)
•  • •• 0.997
GSVIVG00027295001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (225 aa)
•  • •• 0.993
GSVIVG00004046001
SubName- Full=Chromosome undetermined scaffold_588, whole genome shotgun sequence; (302 aa)
•  • •• 0.993
GSVIVG00019672001
RecName- Full=Dihydrolipoyl dehydrogenase; EC=1.8.1.4; (502 aa)
•  • •• 0.956
GSVIVG00018944001
RecName- Full=Citrate synthase; (466 aa)
•  •  • 0.908
GSVIVG00009618001
RecName- Full=L-lactate dehydrogenase; EC=1.1.1.27; (350 aa)
•   ••• 0.896

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
PLN00124 422 PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi 1e-151
pfam08442202 pfam08442, ATP-grasp_2, ATP-grasp domain 5e-65
PRK00696 388 PRK00696, sucC, succinyl-CoA synthetase subunit be 3e-61
COG0045 387 COG0045, SucC, Succinyl-CoA synthetase, beta subun 3e-51
TIGR01016 386 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be 8e-46
PRK14046 392 PRK14046, PRK14046, malate--CoA ligase subunit bet 3e-39
pfam01071193 pfam01071, GARS_A, Phosphoribosylglycinamide synth 0.003
>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information 
 Score =  429 bits (1105), Expect = e-151
 Identities = 190/233 (81%), Positives = 216/233 (92%)

Query: 1   MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
           M+RGLLNKL SRSL+VAG+WQ QQLRRLNIHEYQGAELM+KYG+NVPKG A +S+DEVKK
Sbjct: 1   MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKK 60

Query: 61  AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120
           A++  FPD  E+VVKSQILAGGRGLGTFK+GLKGGVHIVKK++ E+LAGKMLGQILVTKQ
Sbjct: 61  ALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKKDKAEELAGKMLGQILVTKQ 120

Query: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180
           TGP GK V+KVYLCEK+SLVNEMYFAI+LDR +AGP+II CSKGGTSIEDLAEK+P  I+
Sbjct: 121 TGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKII 180

Query: 181 KVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEV 233
           KVPID+F GITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFC+ DCT++E+
Sbjct: 181 KVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEI 233

Length = 422
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
PLN00124 422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 100.0
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 100.0
COG0045 387 SucC Succinyl-CoA synthetase, beta subunit [Energy 100.0
PRK14046 392 malate--CoA ligase subunit beta; Provisional 100.0
TIGR01016 386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 100.0
PRK00696 388 sucC succinyl-CoA synthetase subunit beta; Provisi 100.0
KOG2799 434 consensus Succinyl-CoA synthetase, beta subunit [E 100.0
PLN02235 423 ATP citrate (pro-S)-lyase 100.0
KOG1447 412 consensus GTP-specific succinyl-CoA synthetase, be 100.0
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 100.0
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 99.45
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.4
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.39
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.35
PLN02257434 phosphoribosylamine--glycine ligase 99.35
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 99.33
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.33
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.33
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 99.32
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.32
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.31
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 99.3
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.3
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.28
PLN02948 577 phosphoribosylaminoimidazole carboxylase 99.27
PRK14570364 D-alanyl-alanine synthetase A; Provisional 99.26
COG1042598 Acyl-CoA synthetase (NDP forming) [Energy producti 99.26
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 99.25
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.25
PRK08654 499 pyruvate carboxylase subunit A; Validated 99.25
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 99.25
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.25
PRK08591 451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.23
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.23
PRK05586447 biotin carboxylase; Validated 99.22
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.2
PRK07178 472 pyruvate carboxylase subunit A; Validated 99.19
PRK12833 467 acetyl-CoA carboxylase biotin carboxylase subunit; 99.19
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.19
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.18
PRK08462445 biotin carboxylase; Validated 99.16
PLN02735 1102 carbamoyl-phosphate synthase 99.15
PLN02735 1102 carbamoyl-phosphate synthase 99.15
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 99.13
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.13
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 99.12
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.12
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.09
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 99.08
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 99.07
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 99.07
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 99.07
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 99.06
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 99.03
PRK12999 1146 pyruvate carboxylase; Reviewed 98.98
PRK06524 493 biotin carboxylase-like protein; Validated 98.97
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 98.94
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 98.94
PRK07206416 hypothetical protein; Provisional 98.93
PRK10446300 ribosomal protein S6 modification protein; Provisi 98.92
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 98.92
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 98.91
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 98.89
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 98.89
PRK14016 727 cyanophycin synthetase; Provisional 98.88
PRK02186 887 argininosuccinate lyase; Provisional 98.86
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 98.86
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 98.85
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 98.82
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 98.76
PRK05784 486 phosphoribosylamine--glycine ligase; Provisional 98.74
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 98.71
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 98.68
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 98.57
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 98.55
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 98.52
KOG0238 670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 98.42
PRK06849389 hypothetical protein; Provisional 98.4
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 98.36
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 98.34
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 98.34
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 98.33
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 98.26
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 98.2
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 97.96
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 97.55
KOG1254 600 consensus ATP-citrate lyase [Energy production and 97.52
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 97.49
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 97.48
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 97.46
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 97.35
PLN02941328 inositol-tetrakisphosphate 1-kinase 97.03
COG3919415 Predicted ATP-grasp enzyme [General function predi 96.74
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 96.05
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 96.05
PRK12458338 glutathione synthetase; Provisional 95.91
PRK05246316 glutathione synthetase; Provisional 95.47
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 95.02
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 94.05
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 91.41
COG2232389 Predicted ATP-dependent carboligase related to bio 91.32
COG1042 598 Acyl-CoA synthetase (NDP forming) [Energy producti 91.07
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 90.6
PF1028138 Ish1: Putative stress-responsive nuclear envelope 86.57
PF11379355 DUF3182: Protein of unknown function (DUF3182); In 82.2
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-49  Score=385.87  Aligned_cols=248  Identities=75%  Similarity=1.152  Sum_probs=234.2

Q ss_pred             CchhhhhhhhcccccccchhhhhhhcccCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCC--CCeEEEEEee
Q 022648            1 MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD--HKELVVKSQI   78 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g--~~PvVlKaq~   78 (294)
                      |.+|..+++.+.+..+...+..+|.++|+|+||++|++|++||||+|++.++++++|+.++++++  +  .+|+|+|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l--~~~~~pvVvKaqv   78 (422)
T PLN00124          1 MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKM--FPDEGEVVVKSQI   78 (422)
T ss_pred             CchhHHHHHHHhhhhhhchhhhhcccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh--cccCCcEEEEEEe
Confidence            67889999999988888777667889999999999999999999999999999999999999998  5  4799999999


Q ss_pred             ecCCCCCcccccCCcCcEEEc-CHHHHHHHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceE
Q 022648           79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI  157 (294)
Q Consensus        79 ~~ggrgK~~~~~sd~GGV~l~-s~eea~~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPv  157 (294)
                      ++|||||++|++..+|||+++ + +++.+++++|+++.++++|+++.|..+++++|+|++..+.|+|+|+++||..++|+
T Consensus        79 ~~GGRGka~hKs~~~GGV~l~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpv  157 (422)
T PLN00124         79 LAGGRGLGTFKNGLKGGVHIVKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPL  157 (422)
T ss_pred             ccCCccccccccccCCeEEECCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcE
Confidence            999999998877779999999 6 99999999999998889999988999999998888888999999999999778999


Q ss_pred             EEecCCCCceeeeccccCCCeEEEEeecCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeecee
Q 022648          158 IIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNF  237 (294)
Q Consensus       158 il~s~~GGv~vE~l~~~~pd~v~~~~l~p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~  237 (294)
                      ++++..||++||.+++.+||.+.+++++|..+++++++++++..+++++.+.+++++++.+||++|.++|++++|||||+
T Consensus       158 il~s~~GGv~IEeva~~~pd~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~  237 (422)
T PLN00124        158 IIACSKGGTSIEDLAEKFPEKIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLA  237 (422)
T ss_pred             EEEECCCCccHHHhhhhCchheeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceE
Confidence            98888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcEEEEEEEE
Q 022648          238 YISLVLLICMSLLV  251 (294)
Q Consensus       238 v~~dg~~valDa~i  251 (294)
                      ++++|+++|+||++
T Consensus       238 vt~~G~~valDAKi  251 (422)
T PLN00124        238 ETADGQLVAADAKL  251 (422)
T ss_pred             EccCCCEEEEEEEE
Confidence            99999999999998

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion] Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [] Back     alignment and domain information
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
2fp4_B 395 Crystal Structure Of Pig Gtp-Specific Succinyl-Coa 1e-38
1eud_B 396 Crystal Structure Of Phosphorylated Pig Heart, Gtp- 1e-38
1euc_B 396 Crystal Structure Of Dephosphorylated Pig Heart, Gt 1e-38
1scu_B 388 The Crystal Structure Of Succinyl-Coa Synthetase Fr 7e-21
1cqi_B 385 Crystal Structure Of The Complex Of Adp And Mg2+ Wi 9e-21
1jll_B 388 Crystal Structure Analysis Of The E197betaa Mutant 4e-20
3ufx_B 397 Thermus Aquaticus Succinyl-coa Synthetase In Comple 1e-14
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 3/208 (1%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58
Query: 88  FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  EV   LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 59  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEVS 234
             +N A +Q+KKLY LF + D T +EV+
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVN 206
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396 Back     alignment and structure
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388 Back     alignment and structure
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385 Back     alignment and structure
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388 Back     alignment and structure
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 397 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
2fp4_B 395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 3e-90
2nu8_B 388 SCS-beta, succinyl-COA synthetase beta chain; citr 2e-81
3ufx_B 397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 4e-60
3mwd_A 425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 1e-50
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 2e-12
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 3e-04
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395 Back     alignment and structure
 Score =  272 bits (699), Expect = 3e-90
 Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 3/207 (1%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  E V  LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 59  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEV 233
             +N A +Q+KKLY LF + D T +EV
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEV 205
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388 Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397 Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425 Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
2fp4_B 395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 100.0
3ufx_B 397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 100.0
2nu8_B 388 SCS-beta, succinyl-COA synthetase beta chain; citr 100.0
3mwd_A 425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 100.0
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 100.0
1wr2_A238 Hypothetical protein PH1789; structural genomics, 100.0
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.57
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.52
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.52
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.44
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.43
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 99.42
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 99.41
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.41
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 99.4
3ouz_A446 Biotin carboxylase; structural genomics, center fo 99.38
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.36
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.35
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.35
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.34
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 99.33
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.33
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 99.32
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 99.31
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.31
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 99.3
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 99.3
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 99.29
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.28
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 99.28
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 99.28
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.28
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 99.26
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 99.26
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 99.22
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 99.21
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 99.17
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 99.17
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 99.17
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 99.16
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 99.15
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.14
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 99.12
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.12
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 99.11
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 99.11
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.08
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 99.08
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 99.06
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.05
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 99.05
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 99.04
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 99.02
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 99.01
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 99.0
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 98.98
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 98.98
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 98.96
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 98.95
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 98.78
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 98.77
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 98.6
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 98.36
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 98.28
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 98.25
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 98.13
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 97.53
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 97.46
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 97.3
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 97.19
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 97.18
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 97.17
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 97.03
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 84.65
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
Probab=100.00  E-value=9.1e-46  Score=357.56  Aligned_cols=222  Identities=39%  Similarity=0.635  Sum_probs=210.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCC-eEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHH
Q 022648           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (294)
Q Consensus        28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~-PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~  105 (294)
                      |+||||++|++|++||||+|++.+++|++|+.++++++  | + |+|+|||+++||||||+|+++..|||+++ |+++++
T Consensus         1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~l--g-~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~   77 (395)
T 2fp4_B            1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--N-AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG   77 (395)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--T-CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred             CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHc--C-CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence            78999999999999999999999999999999999999  8 8 89999998899999999954444999999 999999


Q ss_pred             HHHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeec
Q 022648          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (294)
Q Consensus       106 ~a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~  185 (294)
                      +++++++++.++++|+++.|..+++++||+|++++.|+|+++.+||.+++|++++|.+||++||.++.++||++++++++
T Consensus        78 ~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~id  157 (395)
T 2fp4_B           78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID  157 (395)
T ss_dssp             HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC
T ss_pred             HHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecC
Confidence            99999998877788888888888999999999999999999999999877999999999999999988899999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEEe
Q 022648          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLVG  252 (294)
Q Consensus       186 p~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i~  252 (294)
                      |..++++++|+++++.+|+++.+.+++++++.+||++|.+.|++++||||++++++|.++|+||++.
T Consensus       158 p~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~  224 (395)
T 2fp4_B          158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKIN  224 (395)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEE
T ss_pred             CCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEE
Confidence            9999999999999999999999999999999999999999999999999999999977999999994
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d2nu7b2238 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta- 2e-32
d1eucb2246 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta- 2e-28
d1a9xa5275 d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta 0.001
d1a9xa6259 d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta 0.002
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (294), Expect = 2e-32
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 8/206 (3%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+HEYQ  +L A+YG+  P G A  +  E ++A           VVK Q+ AGGRG   
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASK--IGAGPWVVKCQVHAGGRGKA- 57

Query: 88  FKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
                 G   +  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   
Sbjct: 58  -----GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112

Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVA 207
           ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       ++   L  +  
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172

Query: 208 DRNDAIEQVKKLYKLFCESDCTLLEV 233
                 +    L  +F E D  L+E+
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEI 198
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 100.0
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.52
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.42
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.42
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.41
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.4
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.39
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.39
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 99.38
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.21
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.16
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.06
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 99.06
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 98.98
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 98.82
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 98.72
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 97.52
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 93.22
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-44  Score=321.83  Aligned_cols=215  Identities=30%  Similarity=0.484  Sum_probs=201.8

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHhCCCCCeEEEEEeeecCCCCCcccccCCcCcEEEc-CHHHHHH
Q 022648           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (294)
Q Consensus        28 ~~L~E~~ak~lL~~yGIpvp~~~~a~s~eEa~~aa~~l~~g~~PvVlKaq~~~ggrgK~~~~~sd~GGV~l~-s~eea~~  106 (294)
                      |+|+|||||++|++||||||++.+++|++||.++++++  |++|+|+|+|+..+||||       .|||+++ +++++.+
T Consensus         1 m~L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~i--G~~pvVlKaq~~~~hk~~-------~GGV~~~~~~~e~~~   71 (238)
T d2nu7b2           1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKI--GAGPWVVKCQVHAGGRGK-------AGGVKVVNSKEDIRA   71 (238)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHH--CSSCEEEEECCSSSCTTT-------TTCEEEECSHHHHHH
T ss_pred             CchhHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHh--CCCcEEEEEeeccccccc-------ceEEEeccccHHHHH
Confidence            89999999999999999999999999999999999999  844999999977787777       7999999 9999999


Q ss_pred             HHHHHhhchhhhhccCCCCcccceEEEEeecCCCeeEEEEEEEcCCCCceEEEecCCCCceeeeccccCCCeEEEEeecC
Q 022648          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (294)
Q Consensus       107 a~~~~l~~~~~~~q~~~~g~~i~~vLVee~v~~~~El~lgv~~D~~~~gPvil~s~~GGv~vE~l~~~~pd~v~~~~l~p  186 (294)
                      ++.+++++.+.+.++.+.|..+++++||+|++++.|+|+|+++||.|++++++++..||+++|.+.+.+|..+...++++
T Consensus        72 ~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~~  151 (238)
T d2nu7b2          72 FAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDP  151 (238)
T ss_dssp             HHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECCT
T ss_pred             HHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEEecccceeeEeeeccccccccccccCc
Confidence            99999998888888888899999999999999999999999999998766677777899999999998898888889999


Q ss_pred             CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHhhccCCCcEEEeeceeEecCCcEEEEEEEE
Q 022648          187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEVSMNFYISLVLLICMSLLV  251 (294)
Q Consensus       187 ~~gl~~~~a~~~~~~lg~~~~~~~~l~~~l~~L~~l~~~~d~~~LEINPL~v~~dg~~valDa~i  251 (294)
                      ..+++...+.+++..+|.++.+..++++++.++|++|.+.+++++|||||+++++|+++|+||++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki  216 (238)
T d2nu7b2         152 LTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKL  216 (238)
T ss_dssp             TTCCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEE
T ss_pred             ccccchhhHHHHHHhcCCcchhhHHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEE
Confidence            99999999999999999999999999999999999999999999999999999999889999998
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure