Citrus Sinensis ID: 022676

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MIAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM
Secondary Structure (PSIPRED)
ccccccEEcccccccccccccccccccccccccccccccccccEEcccccccEEEEccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEccHHHHHHHHccccHHHHHHHHcccccccEEEEEEEccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEEEccHHHHHHHHccHHHHHHHHHHcccccccEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccccEEEEEEccccEEEEEccccccEEEEEEccccccccccccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEccEcccccccccEEEEEEEcccHHHHHHHHcccHHHHHHHHHcccccccEEEEEEcccccccccHccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEEccHHHHHHHHccHHHHHHHHHHccHHHHcEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
miaqsltvnpfpnsflkchrpnpgflssSVSLNVSRWNEAMSMRLSRERTVGTTVLaskeqsssynsekkRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLgrisnenvenythgvfmRFQRKEHLVKFyenpfyskvlKEHVMpychglmnvdyeteveddilpifrkgedfnfGVEFVLLISFIQsafggpaeDALESLKRLTAEFPSLIvqstqgsnfnlsseIYTHAVVIRLRSVEAFEMFVgssdykemwsnkfqpiirtqlpvhfsvdpvgteim
Flexible Loop (DISEMBL)
MIAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRlsrertvgttvlaskeqsssynsekkrkvvEHICLLkakkdlseeeEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQpiirtqlpvhfsvdpvgteim
Low Complexity Region (SEG)
MIAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM
Disordered region (IsUnstruct)
**************FLKC******************************************************VVEHICLLKA**********DMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVD*******
Disordered Region (DISOPRED)
*******VNPFPNSFLKCHRPN**************WNEAMSMRLSRERTVGTT*******************VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAF*********SLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEI*
Disordered Region (DISEMBL)
MIAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRLSR**********************KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM
Disordered Region (DISPRO)
*IAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTTVLASKE*******EKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
297742557	298	unnamed protein product [Vitis vinifera]	0.989	0.973	0.653	1e-105
225426872	241	PREDICTED: uncharacterized protein LOC10	0.819	0.995	0.704	5e-98
224131606	230	predicted protein [Populus trichocarpa]	0.761	0.969	0.744	2e-96
449500011	287	PREDICTED: uncharacterized LOC101221322	0.979	1.0	0.597	3e-92
449457664	279	PREDICTED: uncharacterized protein LOC10	0.822	0.863	0.676	2e-91
356513411	289	PREDICTED: uncharacterized protein LOC10	0.866	0.878	0.642	2e-90
297826693	276	hypothetical protein ARALYDRAFT_320989 [	0.843	0.894	0.615	3e-86
356527616	310	PREDICTED: uncharacterized protein LOC10	0.761	0.719	0.695	8e-86
26984077	272	hypothetical protein [Arabidopsis thalia	0.866	0.933	0.598	9e-85
30685321	276	Stress responsive alpha-beta barrel doma	0.866	0.920	0.598	2e-84

>gi|297742557|emb|CBI34706.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/297 (65%), Positives = 232/297 (78%), Gaps = 7/297 (2%)

Query: 1   MIAQSLTVNPFPNSFLKCHRPNP---GFLSSSVSL-NVSRWNEAMSMRLSRERTVGTTVL 56
           M  Q+ T +P   S   C    P    FLSSS  L NV R N  ++++ S  +  G    
Sbjct: 5   MCIQTPTFSP---STTHCFFRQPISSPFLSSSRKLYNVLRLNGGVNVQFSNGKKRGAIFS 61

Query: 57  ASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRI 116
           AS  Q+SS ++E KRKVVEHICLLKAK++LSEEEEKDMLDYLYT+QYQM GI+AI+LGRI
Sbjct: 62  ASVGQNSSNDTEGKRKVVEHICLLKAKENLSEEEEKDMLDYLYTTQYQMRGIIAITLGRI 121

Query: 117 SNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDIL 176
           S++N+ENYTH V+MRFQRKE L KFYENPFY  VL+E VMPYCHGL+ VD+E+EVEDDIL
Sbjct: 122 SDQNIENYTHAVYMRFQRKEDLGKFYENPFYLGVLRERVMPYCHGLIYVDFESEVEDDIL 181

Query: 177 PIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLS 236
           PIFRKGE+FN+GVEF+LLISF +S FGGPAEDAL SL  L  EFPSLIVQSTQG NF  S
Sbjct: 182 PIFRKGEEFNYGVEFILLISFAKSKFGGPAEDALASLAELILEFPSLIVQSTQGLNFCPS 241

Query: 237 SEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM 293
           S+ YTH VVIR RS+EA E+F GS++YK++W +KFQ I++  LP+HFSVDPVGTEIM
Sbjct: 242 SKEYTHGVVIRFRSIEALELFTGSTEYKDIWRSKFQMIVQKTLPIHFSVDPVGTEIM 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426872|ref|XP_002277019.1| PREDICTED: uncharacterized protein LOC100244522 [Vitis vinifera]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 169/240 (70%), Positives = 202/240 (84%)

Query: 54  TVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISL 113
           + +  +  S+   +  K KVVEHICLLKAK++LSEEEEKDMLDYLYT+QYQM GI+AI+L
Sbjct: 2   STIIGRSASAKQKNAGKLKVVEHICLLKAKENLSEEEEKDMLDYLYTTQYQMRGIIAITL 61

Query: 114 GRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVED 173
           GRIS++N+ENYTH V+MRFQRKE L KFYENPFY  VL+E VMPYCHGL+ VD+E+EVED
Sbjct: 62  GRISDQNIENYTHAVYMRFQRKEDLGKFYENPFYLGVLRERVMPYCHGLIYVDFESEVED 121

Query: 174 DILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNF 233
           DILPIFRKGE+FN+GVEF+LLISF +S FGGPAEDAL SL  L  EFPSLIVQSTQG NF
Sbjct: 122 DILPIFRKGEEFNYGVEFILLISFAKSKFGGPAEDALASLAELILEFPSLIVQSTQGLNF 181

Query: 234 NLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM 293
             SS+ YTH VVIR RS+EA E+F GS++YK++W +KFQ I++  LP+HFSVDPVGTEIM
Sbjct: 182 CPSSKEYTHGVVIRFRSIEALELFTGSTEYKDIWRSKFQMIVQKTLPIHFSVDPVGTEIM 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131606|ref|XP_002321132.1| predicted protein [Populus trichocarpa] gi|222861905|gb|EEE99447.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 194/223 (86%)

Query: 71  RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFM 130
           RKVVEH+CLLKAKK LS+E+EKDMLDYLYTSQYQM GIVA+SLGRIS++NVENYTH VFM
Sbjct: 8   RKVVEHVCLLKAKKFLSDEDEKDMLDYLYTSQYQMRGIVAVSLGRISDDNVENYTHAVFM 67

Query: 131 RFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVE 190
           RFQ KE + +FYENPFY KVLKEHVMPYCH L+NVDYE+EVEDD++PIFRKGE+FN+G E
Sbjct: 68  RFQTKEDVTRFYENPFYLKVLKEHVMPYCHDLVNVDYESEVEDDMIPIFRKGEEFNYGEE 127

Query: 191 FVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRS 250
           FV L +F  SA G P EDAL SL++L  EFPSLIVQSTQGSNFNLSS+ YTHAVV R RS
Sbjct: 128 FVHLFAFDDSALGAPVEDALASLEKLKKEFPSLIVQSTQGSNFNLSSKEYTHAVVTRFRS 187

Query: 251 VEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM 293
            EAFE+FVGS++Y+++W +KF+ I R  LP+HFSVDPVG E+M
Sbjct: 188 SEAFEIFVGSTEYRDVWRSKFELITRKTLPIHFSVDPVGKEVM 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500011|ref|XP_004160978.1| PREDICTED: uncharacterized LOC101221322 [Cucumis sativus]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/293 (59%), Positives = 218/293 (74%), Gaps = 6/293 (2%)

Query: 1   MIAQSLTVNPFPNSFLKCHRPNPGFLSSSVSLNVSRWNEAMSMRLSRERTVGTTVLASKE 60
           M+ Q+ + NP  + F     P+   +S  +S NVS  +  +   + R     + + AS E
Sbjct: 1   MLIQAYSQNP--HFFFLPSNPS---ISPHLSFNVSH-SPKLKSPVGRRYESMSRISASGE 54

Query: 61  QSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNEN 120
            + +    KKRKV EHI LLKAK+++SEEEE DMLDYLYT+QYQM GIVA+SLGR  ++N
Sbjct: 55  HNPTIIVGKKRKVFEHISLLKAKENISEEEENDMLDYLYTTQYQMRGIVAVSLGRACDQN 114

Query: 121 VENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFR 180
            E YTHGV+MRFQ KE L KFY NPFY +VL EHVMPYCHGL++VDY++EVEDD+LPIFR
Sbjct: 115 NERYTHGVYMRFQSKEDLEKFYVNPFYLRVLNEHVMPYCHGLVHVDYKSEVEDDMLPIFR 174

Query: 181 KGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIY 240
           KGE+FN+GVEFVLLI F Q +FG P EDAL SL+RLT + PSLIVQ TQG NFN S + +
Sbjct: 175 KGEEFNYGVEFVLLIKFRQDSFGKPLEDALNSLERLTIDNPSLIVQFTQGLNFNPSCKEF 234

Query: 241 THAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM 293
           TH VVIR RS+ AFE+F GSS YK++W +KFQPII+  + +HFSVDPVGTEIM
Sbjct: 235 THGVVIRFRSINAFEIFTGSSQYKDIWKSKFQPIIQKTVALHFSVDPVGTEIM 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457664|ref|XP_004146568.1| PREDICTED: uncharacterized protein LOC101221322 [Cucumis sativus]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/241 (67%), Positives = 196/241 (81%)

Query: 53  TTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAIS 112
           + + AS E + +    KKRKV EHI LLKAK+++SEEEE DMLDYLYT+QYQM GIVA+S
Sbjct: 39  SRISASGEHNPTIIVGKKRKVFEHISLLKAKENISEEEENDMLDYLYTTQYQMRGIVAVS 98

Query: 113 LGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVE 172
           LGR  ++N E YTHGV+MRFQ KE L KFY NPFY +VL EHVMPYCHGL++VDY++EVE
Sbjct: 99  LGRACDQNNERYTHGVYMRFQSKEDLEKFYVNPFYLRVLNEHVMPYCHGLVHVDYKSEVE 158

Query: 173 DDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSN 232
           DD+LPIFRKGE+FN+GVEFVLLI F Q +FG P EDAL SL+RLT + PSLIVQ TQG N
Sbjct: 159 DDMLPIFRKGEEFNYGVEFVLLIKFRQDSFGKPLEDALNSLERLTIDNPSLIVQFTQGLN 218

Query: 233 FNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEI 292
           FN S + +TH VVIR RS+ AFE+F GSS YK++W +KFQPII+  + +HFSVDPVGTEI
Sbjct: 219 FNPSCKEFTHGVVIRFRSINAFEIFTGSSQYKDIWKSKFQPIIQKTVALHFSVDPVGTEI 278

Query: 293 M 293
           M
Sbjct: 279 M 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513411|ref|XP_003525407.1| PREDICTED: uncharacterized protein LOC100801905 [Glycine max]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/257 (64%), Positives = 198/257 (77%), Gaps = 3/257 (1%)

Query: 37  WNEAMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLD 96
           WN   S R ++   V  +V    ++S++  S++KRK+VEH+CLLKAK+DLSE+EE DMLD
Sbjct: 36  WNRFKSARKNQRMMVLCSV---DDRSNNLGSQRKRKIVEHVCLLKAKQDLSEDEENDMLD 92

Query: 97  YLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVM 156
           YLYT+QYQMGG+VAISLGRIS  N E YTH +FMRFQ+KE+L KFY+NPFY KVLK+HVM
Sbjct: 93  YLYTTQYQMGGVVAISLGRISAPNPERYTHALFMRFQKKENLEKFYDNPFYLKVLKDHVM 152

Query: 157 PYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRL 216
            YCHGL NVDYE+EV D++L IFRKGE+FN GVEFVLLISF + A G  AE AL SL  +
Sbjct: 153 TYCHGLTNVDYESEVADEMLSIFRKGEEFNHGVEFVLLISFNEDALGNQAEHALASLASM 212

Query: 217 TAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIR 276
             E PSLIVQ T G NF+ SS+ YTH VVIR RSVEAFE+F+ S +YK  W  KFQPI+ 
Sbjct: 213 MLESPSLIVQFTHGLNFSPSSKEYTHGVVIRFRSVEAFEIFINSKEYKNAWHYKFQPIVH 272

Query: 277 TQLPVHFSVDPVGTEIM 293
               +HFSVDPVGTEIM
Sbjct: 273 KSFSLHFSVDPVGTEIM 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826693|ref|XP_002881229.1| hypothetical protein ARALYDRAFT_320989 [Arabidopsis lyrata subsp. lyrata] gi|297327068|gb|EFH57488.1| hypothetical protein ARALYDRAFT_320989 [Arabidopsis lyrata subsp. lyrata]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/247 (61%), Positives = 191/247 (77%)

Query: 47  RERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMG 106
           R +       AS +Q +S  S K RKVVEH+CLLKAK+ LSEE EKDMLDYLYT+QYQM 
Sbjct: 30  RRKNPRVAFCASDDQIASSKSNKTRKVVEHVCLLKAKEGLSEEVEKDMLDYLYTTQYQMR 89

Query: 107 GIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVD 166
           GIVAIS+G I + N+E+YTH +FMRFQRKE L KFYEN F+ KVL EHV P+CHGL NVD
Sbjct: 90  GIVAISVGCIGDRNIEDYTHALFMRFQRKEDLGKFYENTFFLKVLNEHVTPFCHGLTNVD 149

Query: 167 YETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQ 226
           YE+EVEDDIL IFRKGE++N+G EFVLLI+F ++A     +DA++S  +LT+  PSLIVQ
Sbjct: 150 YESEVEDDILAIFRKGEEYNYGEEFVLLITFAKNASDKNTKDAMDSFAQLTSSLPSLIVQ 209

Query: 227 STQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVD 286
           STQGSNFN SS+ +THA V+R RS +A E+ V   +YK+MW ++F+P I   + +HFSVD
Sbjct: 210 STQGSNFNDSSKEFTHAAVVRFRSFDAMEILVEGREYKDMWRSQFEPFIEKAVALHFSVD 269

Query: 287 PVGTEIM 293
           PVGT++M
Sbjct: 270 PVGTDVM 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527616|ref|XP_003532404.1| PREDICTED: uncharacterized protein LOC100807996 [Glycine max]

 Score =  322 bits (826), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 180/223 (80%)

Query: 71  RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFM 130
           RK+VEH+CLLKAK DLSEEEE DML YLYT+QYQMGG+VAISLGRIS+ N E YTH +FM
Sbjct: 88  RKIVEHVCLLKAKHDLSEEEENDMLGYLYTTQYQMGGVVAISLGRISSPNPERYTHALFM 147

Query: 131 RFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKGEDFNFGVE 190
           RFQ+KE+L KFYENPFY KVLK++VM YCHGL NVDYE+EV D++L IFRKGE+FN GVE
Sbjct: 148 RFQKKENLEKFYENPFYMKVLKDYVMTYCHGLTNVDYESEVADEMLSIFRKGEEFNHGVE 207

Query: 191 FVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRS 250
           FVLLISF + A G  AE AL SL  +  E PSLIVQ T G N + SS+ YTH VVIR RS
Sbjct: 208 FVLLISFNEDALGNQAEHALASLASMMLESPSLIVQFTHGLNLSPSSKEYTHGVVIRFRS 267

Query: 251 VEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGTEIM 293
           VEAFE+F+ S +YK +W +KFQPI+     +HFSVDPVGTEIM
Sbjct: 268 VEAFEIFINSKEYKNVWHSKFQPIVHKSFSLHFSVDPVGTEIM 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26984077|gb|AAN85202.1| hypothetical protein [Arabidopsis thaliana]

 Score =  319 bits (817), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 193/254 (75%)

Query: 40  AMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLY 99
            M +   R +T   T  A+ +Q +S  S K RKVVEH+CLLKAK+ LSEE EKDMLDYLY
Sbjct: 19  GMFVHQCRTKTPRVTFCAADDQIASSKSNKTRKVVEHVCLLKAKEGLSEEVEKDMLDYLY 78

Query: 100 TSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYC 159
           T+QYQM GIVAIS+G I + N E +TH ++MRFQ+KE L KFYENPF+ KVL E+V P+C
Sbjct: 79  TTQYQMRGIVAISVGCIGDRNNEYFTHALYMRFQKKEDLDKFYENPFFLKVLNEYVTPFC 138

Query: 160 HGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAE 219
           HGL NVDYE+EVEDDIL IFRKGE++N+G EFVLLI+F +SA     +DA++S  +LT+ 
Sbjct: 139 HGLTNVDYESEVEDDILAIFRKGEEYNYGEEFVLLITFAKSASEKNTKDAMDSFAQLTSS 198

Query: 220 FPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQL 279
            PSLIVQSTQGSNFN SS+ +THA V+R RS +A E+F    +YK+MW ++F+P I    
Sbjct: 199 LPSLIVQSTQGSNFNGSSKEFTHAAVVRFRSFDAMEIFFEGREYKDMWRSQFEPFIEKSX 258

Query: 280 PVHFSVDPVGTEIM 293
            +HFSVDPVGT++M
Sbjct: 259 ALHFSVDPVGTDVM 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685321|ref|NP_180809.2| Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gi|51971963|dbj|BAD44646.1| unknown protein [Arabidopsis thaliana] gi|87116636|gb|ABD19682.1| At2g32500 [Arabidopsis thaliana] gi|330253600|gb|AEC08694.1| Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 193/254 (75%)

Query: 40  AMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLY 99
            M +   R +T   T  A+ +Q +S  S K RKVVEH+CLLKAK+ LSEE EKDMLDYLY
Sbjct: 23  GMFVHQCRTKTPRVTFCAADDQIASSKSNKTRKVVEHVCLLKAKEGLSEEVEKDMLDYLY 82

Query: 100 TSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYC 159
           T+QYQM GIVAIS+G I + N E +TH ++MRFQ+KE L KFYENPF+ KVL E+V P+C
Sbjct: 83  TTQYQMRGIVAISVGCIGDRNNEYFTHALYMRFQKKEDLDKFYENPFFLKVLNEYVTPFC 142

Query: 160 HGLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAE 219
           HGL NVDYE+EVEDDIL IFRKGE++N+G EFVLLI+F +SA     +DA++S  +LT+ 
Sbjct: 143 HGLTNVDYESEVEDDILAIFRKGEEYNYGEEFVLLITFAKSASEKNTKDAMDSFAQLTSS 202

Query: 220 FPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQL 279
            PSLIVQSTQGSNFN SS+ +THA V+R RS +A E+F    +YK+MW ++F+P I    
Sbjct: 203 LPSLIVQSTQGSNFNGSSKEFTHAAVVRFRSFDAMEIFFEGREYKDMWRSQFEPFIEKSE 262

Query: 280 PVHFSVDPVGTEIM 293
            +HFSVDPVGT++M
Sbjct: 263 ALHFSVDPVGTDVM 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2060231	276	AT2G32500 "AT2G32500" [Arabido	0.863	0.916	0.600	1.1e-78
TAIR|locus:2065949	263	AT2G31670 "AT2G31670" [Arabido	0.805	0.897	0.224	1.1e-09

TAIR|locus:2060231 AT2G32500 "AT2G32500" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 152/253 (60%), Positives = 193/253 (76%)

Query:    41 MSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYT 100
             M +   R +T   T  A+ +Q +S  S K RKVVEH+CLLKAK+ LSEE EKDMLDYLYT
Sbjct:    24 MFVHQCRTKTPRVTFCAADDQIASSKSNKTRKVVEHVCLLKAKEGLSEEVEKDMLDYLYT 83

Query:   101 SQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCH 160
             +QYQM GIVAIS+G I + N E +TH ++MRFQ+KE L KFYENPF+ KVL E+V P+CH
Sbjct:    84 TQYQMRGIVAISVGCIGDRNNEYFTHALYMRFQKKEDLDKFYENPFFLKVLNEYVTPFCH 143

Query:   161 GLMNVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEF 220
             GL NVDYE+EVEDDIL IFRKGE++N+G EFVLLI+F +SA     +DA++S  +LT+  
Sbjct:   144 GLTNVDYESEVEDDILAIFRKGEEYNYGEEFVLLITFAKSASEKNTKDAMDSFAQLTSSL 203

Query:   221 PSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLP 280
             PSLIVQSTQGSNFN SS+ +THA V+R RS +A E+F    +YK+MW ++F+P I     
Sbjct:   204 PSLIVQSTQGSNFNGSSKEFTHAAVVRFRSFDAMEIFFEGREYKDMWRSQFEPFIEKSEA 263

Query:   281 VHFSVDPVGTEIM 293
             +HFSVDPVGT++M
Sbjct:   264 LHFSVDPVGTDVM 276

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065949 AT2G31670 "AT2G31670" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 56/250 (22%), Positives = 111/250 (44%)

Query:    40 AMSMRLSRERTVGTTVLASKEQSSSYNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLY 99
             A ++  ++   +   +L  +  S   +S  + +++EHI L K K D    +   M++ L 
Sbjct:    15 AFTISTTKHSRINLRLLPRRSFSVMSSSTPQSQIIEHIVLFKTKDDADSTKITSMINNLN 74

Query:   100 TSQY--QMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMP 157
                Y  Q+  I    L RIS+     +TH +  R++ KE L  +  +P + +V+KE V+P
Sbjct:    75 ALAYLDQVLHISTSPLHRISSATA--FTHVLHSRYESKEDLASYAAHPDHVRVVKESVLP 132

Query:   158 YCHGLMNVDYETE-VEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRL 216
              C  +M VD+  + +   + P+   G      V  + L+   +        +    +K L
Sbjct:   133 ICDDIMAVDWIADRIPGTVAPL--PGS-----VAKLTLLKLKEDVADEAKSEITGVIKGL 185

Query:   217 TAEFPSLIVQSTQGSNFNLS-SEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPII 275
             + +FP  I Q T G NF+ + ++ ++ A +   + +   E      +      +K +  +
Sbjct:   186 SEKFPG-IDQITVGENFSPARAKGFSIASIAYFKDLSEMEAVDAQKELVNSQKDKVRDYV 244

Query:   276 RTQLPVHFSV 285
              + + V F V
Sbjct:   245 DSTIVVEFVV 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      293       293   0.00091  115 3  11 22  0.38    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  203 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.90u 0.13s 26.03t   Elapsed:  00:00:02
  Total cpu time:  25.90u 0.13s 26.03t   Elapsed:  00:00:02
  Start:  Fri May 10 11:39:32 2013   End:  Fri May 10 11:39:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam07876	96	pfam07876, Dabb, Stress responsive A/B Barrel Doma	3e-16
smart00886	97	smart00886, Dabb, Stress responsive A/B Barrel Dom	2e-13
pfam07876	96	pfam07876, Dabb, Stress responsive A/B Barrel Doma	0.001

>gnl|CDD|219615 pfam07876, Dabb, Stress responsive A/B Barrel Domain

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 74  VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR-ISNENVENYTHGVFMRF 132
           + HI L K K D+SEEE  ++L+ L   + ++ GI +I +GR +S E  + YTH +   F
Sbjct: 1   IRHIVLFKFKDDVSEEEIAEVLEGLEALKGEIPGIKSIEVGRNVSPEGNQGYTHALVSEF 60

Query: 133 QRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
           + KE L  +  +P +     E V P     + VD+E
Sbjct: 61  ESKEDLDAYLTHPAHVAF-VERVKPLVEKRVVVDFE 95

The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Arthrobacter nicotinovorans ORF106 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence. Length = 96

>gnl|CDD|214884 smart00886, Dabb, Stress responsive A/B Barrel Domain

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%)

Query: 74  VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENV--ENYTHGVFMR 131
           + HI L K K D SEE+ +++L+ L   +  + GI++I +GR  +       Y H +   
Sbjct: 1   IRHIVLFKLKDDASEEDIEELLEALEALKGLIPGILSIEVGRNVSPEGRSGGYDHVLVSE 60

Query: 132 FQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
           F+ +E L  +  +P +  V++  V P     + VD+E
Sbjct: 61  FEDEEDLDAYQVHPAHVAVVERLVPPLAEDRVVVDFE 97

The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence. Length = 97

>gnl|CDD|219615 pfam07876, Dabb, Stress responsive A/B Barrel Domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 189 VEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEI-YTHAVVIR 247
           +  ++L  F          + LE L+ L  E P  I     G N +      YTHA+V  
Sbjct: 1   IRHIVLFKFKDDVSEEEIAEVLEGLEALKGEIPG-IKSIEVGRNVSPEGNQGYTHALVSE 59

Query: 248 LRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSV 285
             S E  + ++    +      + +P++  ++ V F V
Sbjct: 60  FESKEDLDAYLTHPAHVAFVE-RVKPLVEKRVVVDFEV 96

The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera. It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus. Arthrobacter nicotinovorans ORF106 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an a/b barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PF07876	97	Dabb: Stress responsive A/B Barrel Domain; InterPr	99.93
PF07876	97	Dabb: Stress responsive A/B Barrel Domain; InterPr	99.93
PF03992	78	ABM: Antibiotic biosynthesis monooxygenase; InterP	97.82
PF03992	78	ABM: Antibiotic biosynthesis monooxygenase; InterP	96.81
COG1359	100	Uncharacterized conserved protein [Function unknow	95.84
PF11639	104	HapK: REDY-like protein HapK; InterPro: IPR021667	94.49
COG1359	100	Uncharacterized conserved protein [Function unknow	92.64
PRK10486	96	autoinducer-2 (AI-2) modifying protein LsrG; Provi	92.33
PRK10486	96	autoinducer-2 (AI-2) modifying protein LsrG; Provi	92.03
COG2329	105	Uncharacterized enzyme involved in biosynthesis of	91.45
PF01037	74	AsnC_trans_reg: AsnC family; InterPro: IPR019887 T	90.7
COG2329	105	Uncharacterized enzyme involved in biosynthesis of	90.47
COG5470	96	Uncharacterized conserved protein [Function unknow	86.5
TIGR02118	100	conserved hypothetical protein. This model represe	85.24
PRK13314	107	heme-degrading monooxygenase IsdG; Provisional	84.94
PF07045	65	DUF1330: Protein of unknown function (DUF1330); In	83.58
PRK13312	107	heme-degrading monooxygenase IsdG; Provisional	83.25
PF07045	65	DUF1330: Protein of unknown function (DUF1330); In	82.6
COG5470	96	Uncharacterized conserved protein [Function unknow	82.19

>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants

Probab=99.93  E-value=3.4e-25  Score=173.86  Aligned_cols=95  Identities=27%  Similarity=0.466  Sum_probs=90.1

Q ss_pred             EEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCC--CCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           74 VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENV--ENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        74 I~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~--~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      |+|||+||||++++++++++++++|.+|+++||||+++++|++.+++.  +||||+|+++|+|++||++|++||+|++++
T Consensus         1 I~Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~hp~H~~~~   80 (97)
T PF07876_consen    1 IRHIVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTHPAHQAFV   80 (97)
T ss_dssp             EEEEEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            799999999999999999999999999999999999999999999865  899999999999999999999999999998


Q ss_pred             HHhhccceeeeeeeeeec
Q 022676          152 KEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       152 ~~~i~p~~e~~~vvDye~  169 (293)
                       ++++|++++++++||+.
T Consensus        81 -~~~~p~~~~~~~~D~~V   97 (97)
T PF07876_consen   81 -EFLKPILEDRIVFDFEV   97 (97)
T ss_dssp             -HHHHGGEEEEEEEEEEE
T ss_pred             -HHHHHHhCceEEEEEEC
Confidence             67899999999999974

It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....

>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants

Probab=99.93  E-value=3.6e-25  Score=173.70  Aligned_cols=95  Identities=24%  Similarity=0.429  Sum_probs=90.7

Q ss_pred             eeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCC--CCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          189 VEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSS--EIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       189 i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~--kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      |+|||+||||+++++++++++++.|.+|++++|| |+++++|.|.++..  +|||||++++|+|.+|+++|+.||.|+++
T Consensus         1 I~Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~-i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~hp~H~~~   79 (97)
T PF07876_consen    1 IRHIVLFKLKPDATEEEIEEVLEALRALKDKIPG-IVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTHPAHQAF   79 (97)
T ss_dssp             EEEEEEEEESTTTCHHHHHHHHHHHHHHHHHSTT-ECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHhcccCCCc-eEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcCHHHHHH
Confidence            7899999999999999999999999999999999 99999999999964  99999999999999999999999999996


Q ss_pred             HHhhhhccccceeEEeeEe
Q 022676          267 WSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       267 ~~~~v~p~~e~i~vvDy~v  285 (293)
                      . +.++|++++++++||+|
T Consensus        80 ~-~~~~p~~~~~~~~D~~V   97 (97)
T PF07876_consen   80 V-EFLKPILEDRIVFDFEV   97 (97)
T ss_dssp             H-HHHHGGEEEEEEEEEEE
T ss_pred             H-HHHHHHhCceEEEEEEC
Confidence            5 89999999999999986

It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....

>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen

Probab=97.82  E-value=0.00029  Score=51.74  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ||.-|+.+++|++..++-++.+.+....+..+.||.+...+.++..   ++-.+.++..++|.++++++..+|.|+++.+
T Consensus         1 Mi~v~~~~~v~~~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~~~~W~s~~a~~~~~~s~~~~~~~~   77 (78)
T PF03992_consen    1 MITVIVKFKVKPGKEEEFLAAFQELAEATLRKEPGCLSYELYRSLD---DPNRYVIVERWESEEAFQAHFKSPEFKAFQE   77 (78)
T ss_dssp             EEEEEEEEEEETTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESS---STTEEEEEEEESSHHHHHHHHTSHHHHHHHH
T ss_pred             CEEEEEEEEeCcchHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC---CCCEEEEEEEECCHHHHHHHHcCHHHHHHHh
Confidence            7888999999998876666665555555766799999999998553   3456999999999999999999999998753

The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....

>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen

Probab=96.81  E-value=0.012  Score=42.98  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=55.9

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHH-hhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKR-LTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~-Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      ||.-|+.++.+++...+ ..+.++.+.. +.++.|| .+++....+...   .=...++..++|.++++++..+|.|++.
T Consensus         1 Mi~v~~~~~v~~~~~~~-f~~~~~~~~~~~~~~~~G-~~~~~~~~~~~~---~~~~~~~~~W~s~~a~~~~~~s~~~~~~   75 (78)
T PF03992_consen    1 MITVIVKFKVKPGKEEE-FLAAFQELAEATLRKEPG-CLSYELYRSLDD---PNRYVIVERWESEEAFQAHFKSPEFKAF   75 (78)
T ss_dssp             EEEEEEEEEEETTGHHH-HHHHHHHHHHHHHHTSTT-EEEEEEEEESSS---TTEEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred             CEEEEEEEEeCcchHHH-HHHHHHHHHHHHHhcCCC-cEEEEEEEecCC---CCEEEEEEEECCHHHHHHHHcCHHHHHH
Confidence            67788889988876633 3333444433 6567899 999999985432   2347799999999999999999999875


Q ss_pred             H
Q 022676          267 W  267 (293)
Q Consensus       267 ~  267 (293)
                      .
T Consensus        76 ~   76 (78)
T PF03992_consen   76 Q   76 (78)
T ss_dssp             H
T ss_pred             H
Confidence            4

The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....

>COG1359 Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.23  Score=39.42  Aligned_cols=91  Identities=11%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhh---hcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTA---EFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYK  264 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~---~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~  264 (293)
                      |+.+++..+|+.  .++.++++.+.+..|..   +=|| .+++.+-.+..   ..=++-++-.++|.++++.....| |.
T Consensus         1 ~~~i~~~~~~~~--~~~~~~~~~~~~~~lv~~sr~EeG-cl~Y~l~~d~~---~~~~~~~~E~w~d~~A~~~H~~s~-h~   73 (100)
T COG1359           1 MLMVIVLARFKP--KPGHREEFLDLLAELVEASRAEEG-CLSYELHRDPD---NPGRFVLIEVWEDEAALDAHLQSP-HF   73 (100)
T ss_pred             CcEEEEEEEEEe--CcchHHHHHHHHHHHHHHhccCCC-ceEEEEEEeCC---CCCEEEEEEEECCHHHHHHHhCCH-HH
Confidence            345677778875  33445666555555555   3489 99999998875   234567889999999999999999 55


Q ss_pred             HHHHhhhhccccceeEEeeEe
Q 022676          265 EMWSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       265 ~~~~~~v~p~~e~i~vvDy~v  285 (293)
                      +.+.+.+.+++.....+....
T Consensus        74 ~~~~~~~~~l~~~~~~i~~~~   94 (100)
T COG1359          74 QAFVAALPPLLAGPPEIRVLE   94 (100)
T ss_pred             HHHHHhChHhhcCCcEEEEEe
Confidence            568889999988755544433

>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY

Probab=94.49  E-value=0.4  Score=39.04  Aligned_cols=79  Identities=10%  Similarity=0.149  Sum_probs=60.2

Q ss_pred             EEEEEEecCCCCHHHHHHHHHHH-HhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHHh
Q 022676           76 HICLLKAKKDLSEEEEKDMLDYL-YTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEH  154 (293)
Q Consensus        76 HIVlfK~K~~~s~e~~~~~~~~L-~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~  154 (293)
                      =|++++||++++++..+.+.+.- ......+|.|+++++-+..+...-.|++.=+.+..|.+++..=..-+.-++++..|
T Consensus         4 IV~~i~Lk~gv~~~~fe~Wv~~tDy~tc~~L~sV~sF~V~r~s~~~~aPy~YiEiI~V~d~~~F~~dm~t~~fq~l~~~F   83 (104)
T PF11639_consen    4 IVHLIRLKDGVDPAAFERWVRETDYPTCPSLPSVRSFEVHRASSEADAPYHYIEIIDVSDMDAFGRDMATETFQRLVAEF   83 (104)
T ss_dssp             EEEEEEES-GGGHHHHHHHHHHTHHHHGGG-TTEEEEEEEE----TT-S-SEEEEEEES-HHHHHHHHTSHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHhcchhcccCCCceeeEEEEEccCCCCCCccEEEEEecCCHHHHHHHhccHHHHHHHHHH
Confidence            47899999999999988887654 34556699999999998766555679999999999999999888999999998876

The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.

>COG1359 Uncharacterized conserved protein [Function unknown]

Probab=92.64  E-value=2.8  Score=33.20  Aligned_cols=89  Identities=17%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             cEEEEEEEEecCCCC-HHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           73 VVEHICLLKAKKDLS-EEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        73 mI~HIVlfK~K~~~s-~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      |+.+++..+++..-. .++..+.+..+.+--.+=+|=+.+.+.++..   ..-.+.++=.+.|.+++++....|.-+++.
T Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~~~~~lv~~sr~EeGcl~Y~l~~d~~---~~~~~~~~E~w~d~~A~~~H~~s~h~~~~~   77 (100)
T COG1359           1 MLMVIVLARFKPKPGHREEFLDLLAELVEASRAEEGCLSYELHRDPD---NPGRFVLIEVWEDEAALDAHLQSPHFQAFV   77 (100)
T ss_pred             CcEEEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEEeCC---CCCEEEEEEEECCHHHHHHHhCCHHHHHHH
Confidence            456677777765432 2333333333333223358999999998874   356788999999999999999999999998


Q ss_pred             HHhhccceeeeeee
Q 022676          152 KEHVMPYCHGLMNV  165 (293)
Q Consensus       152 ~~~i~p~~e~~~vv  165 (293)
                      ++ +.+...+...+
T Consensus        78 ~~-~~~l~~~~~~i   90 (100)
T COG1359          78 AA-LPPLLAGPPEI   90 (100)
T ss_pred             Hh-ChHhhcCCcEE
Confidence            76 56776664433

>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional

Probab=92.33  E-value=2.9  Score=32.83  Aligned_cols=84  Identities=11%  Similarity=0.126  Sum_probs=59.6

Q ss_pred             EEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676           74 VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE  153 (293)
Q Consensus        74 I~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~  153 (293)
                      ..=|+-++.|++- .++..+.+..+.....+=||-+.+.+..+..   +.-...++=+++|.++|++....|.-+++.++
T Consensus         2 ~~~ia~~~~kpg~-~~~~~~~l~~~~~~sr~EpGcl~y~~~~~~~---~p~~~~~~E~w~d~~Al~~H~~tph~k~f~~~   77 (96)
T PRK10486          2 HVTLVEINVKEDK-VDEFIEVFRQNHLGSIQEPGNLRFDVLQDPE---VPTRFYIYEAYKDEAAVAFHKTTPHYKTCVEK   77 (96)
T ss_pred             EEEEEEEEECcch-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCC---CCCEEEEEEEeCCHHHHHHHhcCHHHHHHHHH
Confidence            3445667777774 3334444444443333469999999988753   46788999999999999999999999999876


Q ss_pred             hhccceeee
Q 022676          154 HVMPYCHGL  162 (293)
Q Consensus       154 ~i~p~~e~~  162 (293)
                      . .+.+.+-
T Consensus        78 ~-~~ll~~~   85 (96)
T PRK10486         78 L-EPLMTGP   85 (96)
T ss_pred             H-HHHHhCC
Confidence            4 5555543

>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional

Probab=92.03  E-value=2.1  Score=33.60  Aligned_cols=83  Identities=6%  Similarity=-0.019  Sum_probs=56.7

Q ss_pred             eEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHh
Q 022676          190 EFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSN  269 (293)
Q Consensus       190 ~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~  269 (293)
                      .=|+.++.|++. .++..+++..+..-..+=|| .+.+.+..+..   +.=...|+=.+.|.++++.....| |-+.+.+
T Consensus         3 ~~ia~~~~kpg~-~~~~~~~l~~~~~~sr~EpG-cl~y~~~~~~~---~p~~~~~~E~w~d~~Al~~H~~tp-h~k~f~~   76 (96)
T PRK10486          3 VTLVEINVKEDK-VDEFIEVFRQNHLGSIQEPG-NLRFDVLQDPE---VPTRFYIYEAYKDEAAVAFHKTTP-HYKTCVE   76 (96)
T ss_pred             EEEEEEEECcch-HHHHHHHHHHHHHHHhCCCC-ceEEEEEeCCC---CCCEEEEEEEeCCHHHHHHHhcCH-HHHHHHH
Confidence            345566667653 23333333333333334499 99999888753   345677999999999999999999 5555778


Q ss_pred             hhhccccce
Q 022676          270 KFQPIIRTQ  278 (293)
Q Consensus       270 ~v~p~~e~i  278 (293)
                      .+.++++.-
T Consensus        77 ~~~~ll~~~   85 (96)
T PRK10486         77 KLEPLMTGP   85 (96)
T ss_pred             HHHHHHhCC
Confidence            888888754

>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]

Probab=91.45  E-value=4.7  Score=32.52  Aligned_cols=71  Identities=17%  Similarity=0.157  Sum_probs=51.1

Q ss_pred             EecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676           81 KAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE  153 (293)
Q Consensus        81 K~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~  153 (293)
                      +++++. +++..+.......+.+.+||.+++++=+.... .++-.+++++..+|.+|..+...++.|.+.-+.
T Consensus        10 ~v~~g~-~~~fe~~f~~~~~~~~~~~Gf~~~~llr~~~~-~~~~~~~vvt~WeS~eaf~~W~~s~~~~~ah~~   80 (105)
T COG2329          10 AVKEGA-EEEFEERFANRAGLLEEMPGFIGFELLRPKTV-EDPDEYVVVTRWESEEAFKAWRKSDEFKEAHKA   80 (105)
T ss_pred             ecCCCc-HHHHHHHHHHHHhhhhcCCCceEEEEeecCcc-CCCceEEEEEEECCHHHHHhHhcCHHHHHHHHh
Confidence            344443 34555555666666667999999998876431 233348889999999999999999999985543

>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=90.70  E-value=2  Score=31.07  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             EEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhc
Q 022676           78 CLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFY  142 (293)
Q Consensus        78 VlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~  142 (293)
                      |+.+++++.  +..+++.+.|.+    +|+|..+..-      ++.||+.+.+.+.|.++|+.+.
T Consensus         1 V~V~~~~~~--~~~~~~~~~l~~----~p~V~~~~~v------tG~~d~~~~v~~~d~~~l~~~i   53 (74)
T PF01037_consen    1 VLVKVEPGH--DAYDEFAEALAE----IPEVVECYSV------TGEYDLILKVRARDMEELEEFI   53 (74)
T ss_dssp             EEEEESTTG--THHHHHHHHHHT----STTEEEEEEE------SSSSSEEEEEEESSHHHHHHHH
T ss_pred             CEEEEcCCC--chHHHHHHHHHc----CCCEEEEEEE------eCCCCEEEEEEECCHHHHHHHH
Confidence            566776555  556777777776    7999887533      4579999999999999999874

One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....

>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]

Probab=90.47  E-value=5.1  Score=32.32  Aligned_cols=75  Identities=20%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             CCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccce
Q 022676          202 FGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQ  278 (293)
Q Consensus       202 s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i  278 (293)
                      ..++.++.......+-+.+|| .++++.=.+.. ...+=...+++..+|.+|..+...+++|+++.+..-..++.+.
T Consensus        15 ~~~~fe~~f~~~~~~~~~~~G-f~~~~llr~~~-~~~~~~~~vvt~WeS~eaf~~W~~s~~~~~ah~~~~~~~~~~~   89 (105)
T COG2329          15 AEEEFEERFANRAGLLEEMPG-FIGFELLRPKT-VEDPDEYVVVTRWESEEAFKAWRKSDEFKEAHKAGRSNYISGP   89 (105)
T ss_pred             cHHHHHHHHHHHHhhhhcCCC-ceEEEEeecCc-cCCCceEEEEEEECCHHHHHhHhcCHHHHHHHHhcccccccCc
Confidence            345666777777777778999 88888665543 2233347888899999999999999999998776555545543

>COG5470 Uncharacterized conserved protein [Function unknown]

Probab=86.50  E-value=7  Score=31.50  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCc-cEEEEEEECCHHHHHhhccCcchHHHHHHhhccceeeeeeee
Q 022676           88 EEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENY-THGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVD  166 (293)
Q Consensus        88 ~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gy-thaL~s~F~s~edL~~Y~~HP~H~~vv~~~i~p~~e~~~vvD  166 (293)
                      .+..++-.........+--|=--++.|......+... +-.++++|+|.++.....+.|+.+++++..-...-...++||
T Consensus        15 ~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~Rq~~ad~~~iiVe   94 (96)
T COG5470          15 PEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAIRQAAADSEIIIVE   94 (96)
T ss_pred             HHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHHHhhcccccEEEEe
Confidence            4555555555555544444433344444333333333 789999999999999999999999988765433333444444

>TIGR02118 conserved hypothetical protein

Probab=85.24  E-value=11  Score=29.66  Aligned_cols=71  Identities=10%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             ecCCCCHHHHHH-HHHHHHhhhhcCCceEEEEEeecCC--CCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676           82 AKKDLSEEEEKD-MLDYLYTSQYQMGGIVAISLGRISN--ENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE  153 (293)
Q Consensus        82 ~K~~~s~e~~~~-~~~~L~~L~~~IPgv~~i~~G~~~s--~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~  153 (293)
                      =|+ .+.++... ..+.=..|..++||++.........  +....||-+..+.|+|.|++++-...|+-+++.+.
T Consensus         8 r~p-~~~e~F~~yy~~~H~pL~~~~pg~~~y~~~~~~~~~~~~~~~d~i~el~Fds~e~~~~a~~sp~~~~~~~D   81 (100)
T TIGR02118         8 EQP-EDGAAFDHHYRDTHVPLAQKLPGLRRYAVDKIVSGLPGSSPYYGMCELYFDSIEDFQAAFDSPEGKAAAAD   81 (100)
T ss_pred             CCC-CCHHHHHHHHHhccHHHHHhCcCceEEEEecccCCCCCCCCeeEEEEEEECCHHHHHHHHcCHHHHHHHHH
Confidence            345 77666443 3434446777799999998754322  22344999999999999999998888987776544

This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.

>PRK13314 heme-degrading monooxygenase IsdG; Provisional

Probab=84.94  E-value=6.6  Score=32.11  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             EEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           80 LKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        80 fK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ++++++..++-++.+  .=..+.++.||-+.+++-+.... .+.-.+...++.+|+|+.+++...++|.+.-+
T Consensus         8 i~V~~G~~~~~~erF--~r~~~ie~~pGF~~~~vLr~~~~-~~~~~y~v~T~Wes~eaF~aW~~S~aFr~AH~   77 (107)
T PRK13314          8 AKITKGNGHKLIDRF--NKVGKVETMPGFLGLEVLLTQNT-VDYDEVTISTRWNAKEDFQGWTKSPAFKAAHS   77 (107)
T ss_pred             EEeCCCchHHHHHHh--ccCCccccCCCcEEEEEecCCCC-CCCceEEEEEEECCHHHHHHHHcCHHHHHHHh
Confidence            566666655555555  23335667999999998876542 23335666799999999999999999998543

>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length

Probab=83.58  E-value=5  Score=29.31  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676          122 ENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus       122 ~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      ..++..++++|.|.++..++.++|+.+++
T Consensus        36 ~~~~~~viieFPs~~aa~~~~~speYq~~   64 (65)
T PF07045_consen   36 WDPDRVVIIEFPSMEAAKAWYNSPEYQAL   64 (65)
T ss_dssp             -SSSEEEEEEESSHHHHHHHHCSHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHCCHhHHhh
Confidence            56899999999999999999999999984

The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.

>PRK13312 heme-degrading monooxygenase IsdG; Provisional

Probab=83.25  E-value=5.2  Score=32.79  Aligned_cols=68  Identities=7%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             EEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCcc-EEEEEEECCHHHHHhhccCcchHHHH
Q 022676           80 LKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYT-HGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        80 fK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gyt-haL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      |+++++..++-++.+... .. .++.||-+.+++-+...+  .++| +...++.+|+|+.+++...++|.+--
T Consensus         9 i~V~~G~~~~~e~rF~~r-~~-ie~~pGF~~~~vLr~~~~--~~~d~y~v~T~WeseeaFeaW~~SdaFr~AH   77 (107)
T PRK13312          9 LTLTKGTAKDIIERFYTR-HG-IETLEGFDGMFVTQTLEQ--EDFDEVKILTVWKSKQAFTDWLKSDVFKAAH   77 (107)
T ss_pred             EEeCCCcHHHHHHHHccc-CC-cccCCCeEEEEEeecCCC--CCceEEEEEEEECCHHHHHHHhcCHHHHHHH
Confidence            556666655555555444 33 567999999998876543  3455 66679999999999999999988744

>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length

Probab=82.60  E-value=5.1  Score=29.26  Aligned_cols=29  Identities=24%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             CCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          238 EIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       238 kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      ...+..++++|+|.++..++..+|+++++
T Consensus        36 ~~~~~~viieFPs~~aa~~~~~speYq~~   64 (65)
T PF07045_consen   36 WDPDRVVIIEFPSMEAAKAWYNSPEYQAL   64 (65)
T ss_dssp             -SSSEEEEEEESSHHHHHHHHCSHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHCCHhHHhh
Confidence            55788999999999999999999999873

The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.

>COG5470 Uncharacterized conserved protein [Function unknown]

Probab=82.19  E-value=16  Score=29.41  Aligned_cols=86  Identities=17%  Similarity=0.142  Sum_probs=56.3

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC-CCCCc-eEEEEEEeCCHHHHHhhcCChhHHHHHHh
Q 022676          192 VLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL-SSEIY-THAVVIRLRSVEAFEMFVGSSDYKEMWSN  269 (293)
Q Consensus       192 IVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp-~~kGy-thafv~~F~s~eald~Y~~hp~H~~~~~~  269 (293)
                      |+.++.++   +++.++=.......-++.-|  +=+.-|-+.-. ..... |--+|++|+|.++......+|+++.+...
T Consensus         7 Ia~vdv~D---~e~y~~Y~~~~~~a~~~~Gg--r~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~   81 (96)
T COG5470           7 IADVDVRD---PEQYKDYVSKAKPAIEKFGG--RYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAI   81 (96)
T ss_pred             EEEEeecC---HHHHHHHHHHhHHHHHHhCC--eeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHH
Confidence            44444443   36666666666666666655  33444444444 44466 78899999999999999999999987665


Q ss_pred             hhhccccceeEEe
Q 022676          270 KFQPIIRTQLPVH  282 (293)
Q Consensus       270 ~v~p~~e~i~vvD  282 (293)
                      .-...-..++++|
T Consensus        82 Rq~~ad~~~iiVe   94 (96)
T COG5470          82 RQAAADSEIIIVE   94 (96)
T ss_pred             HhhcccccEEEEe
Confidence            4444444556655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1q4r_A	112	Protein AT3G17210; center for eukaryotic structura	3e-14
2qyc_A	103	Ferredoxin-like protein; stress responsive A/B bar	2e-13
3bgu_A	116	Ferredoxin-like protein of unknown function; ferre	5e-11
3bde_A	120	MLL5499 protein; stress responsive A/B barrel doma	5e-11
1tr0_A	108	Stable protein 1; plant protein; 1.80A {Populus tr	5e-10
3bb5_A	121	Stress responsive alpha-beta protein; dimeric ferr	2e-09
1rjj_A	111	Expressed protein; beta barrel, homodimer, structu	6e-08
3fmb_A	118	Dimeric protein of unknown function and ferredoxi	2e-07

>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A Length = 112

 Score = 66.9 bits (163), Expect = 3e-14
 Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 67  SEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR-ISNENVEN-Y 124
            E+ +  V+H+ L   K  +S E+ ++++         +  + A   G+ +S EN+   Y
Sbjct: 4   MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGY 63

Query: 125 THGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEV 171
           TH     F+ KE + ++  +P + +      +     ++ +DY+   
Sbjct: 64  THIFESTFESKEAVAEYIAHPAHVEF-ATIFLGSLDKVLVIDYKPTS 109

>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50} Length = 103

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 74  VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQ 133
             H+ +++    +     + + +Y+   + +  G++    G       + YTH     F 
Sbjct: 5   FLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFV 64

Query: 134 RKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
                  +   P +   +K  + P    ++  D E
Sbjct: 65  DAAAHDAYQVCPAH-VAMKAFMGPRIKRVVVYDGE 98

>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca} Length = 116

 Score = 57.9 bits (140), Expect = 5e-11
 Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 1/103 (0%)

Query: 66  NSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYT 125
           N   +   + HI L +    ++ ++ + ++  L      +  +   + G        NY 
Sbjct: 14  NLYFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYD 73

Query: 126 HGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
             V      ++    + ++P +       + P     + V + 
Sbjct: 74  FAVVADLDGEDGFRAYQDHPDHRAA-LAIIAPMLADRVAVQFA 115

>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti} Length = 120

 Score = 58.0 bits (140), Expect = 5e-11
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 71  RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFM 130
           + ++ H  +   K      EEK  L         + G+      R  +    +Y  G  M
Sbjct: 18  QGMIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPK-IDYHFGFSM 76

Query: 131 RFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
            F  +    ++ ++P +   +++  +P     + +DY 
Sbjct: 77  EFADQAAYTRYNDHPDHVAFVRDRWVPEVEKFLEIDYV 114

>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A Length = 108

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 67  SEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR-ISNENV---E 122
           + +  K+V+H  L + K +++ E+  + ++        +  + + + G  +  E+     
Sbjct: 2   ATRTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNR 61

Query: 123 NYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
            YTH     F+ K  L ++ ++   +    E  +P     + +DY 
Sbjct: 62  GYTHAFESTFESKSGLQEYLDSAALAAF-AEGFLPTLSQRLVIDYF 106

>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP} Length = 121

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 71  RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR-ISNENVE-NYTHGV 128
           + ++ H+ +L+ + + + +   + +  L     ++ G+     G     E     Y +G 
Sbjct: 18  QGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGF 77

Query: 129 FMRFQRKEHLVKFYENPFYSKV---LKEHVMPYCHGLMNVDYE 168
              F  K  L  +  +P + +    L         G++ VD E
Sbjct: 78  LCTFTDKAALDAYAVHPTHQRAGGMLVASCRNGADGILVVDLE 120

>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4 Length = 111

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 73  VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR---ISNENVENYTHGVF 129
             +H+ ++K K+D   +E    L+ L +   Q+  + +   G      +   + +TH   
Sbjct: 5   GFKHLVVVKFKEDTKVDEILKGLENLVS---QIDTVKSFEWGEDKESHDMLRQGFTHAFS 61

Query: 130 MRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILP 177
           M F+ K+  V F  +P + +            ++ +D+        + 
Sbjct: 62  MTFENKDGYVAFTSHPLHVEF-SAAFTAVIDKIVLLDFPVAAVKSSVV 108

>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis} Length = 118

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 71  RKVVEHICLLKAKKDLSEEEE----KDMLDYLYTSQYQMGGIVAISLGRISNENVENYTH 126
           + +V+HI L K + D+  EE+        + +     ++  I  I +G   N   E +  
Sbjct: 18  QGMVKHIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPG-ETWNI 76

Query: 127 GVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
            ++  F   + +  +  +P +     + +         VDYE
Sbjct: 77  ALYSEFDNLDDVKFYATHPEHVAA-GKILAETKESRACVDYE 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2qyc_A	103	Ferredoxin-like protein; stress responsive A/B bar	99.95
2qyc_A	103	Ferredoxin-like protein; stress responsive A/B bar	99.95
1tr0_A	108	Stable protein 1; plant protein; 1.80A {Populus tr	99.95
1q4r_A	112	Protein AT3G17210; center for eukaryotic structura	99.95
3bde_A	120	MLL5499 protein; stress responsive A/B barrel doma	99.94
3bgu_A	116	Ferredoxin-like protein of unknown function; ferre	99.94
1tr0_A	108	Stable protein 1; plant protein; 1.80A {Populus tr	99.94
3fmb_A	118	Dimeric protein of unknown function and ferredoxi	99.94
3bn7_A	120	Ferredoxin-like protein; stress responsive A/B bar	99.94
1q4r_A	112	Protein AT3G17210; center for eukaryotic structura	99.94
3bgu_A	116	Ferredoxin-like protein of unknown function; ferre	99.93
3bb5_A	121	Stress responsive alpha-beta protein; dimeric ferr	99.93
3bde_A	120	MLL5499 protein; stress responsive A/B barrel doma	99.93
3bn7_A	120	Ferredoxin-like protein; stress responsive A/B bar	99.93
3bb5_A	121	Stress responsive alpha-beta protein; dimeric ferr	99.93
3fmb_A	118	Dimeric protein of unknown function and ferredoxi	99.92
1rjj_A	111	Expressed protein; beta barrel, homodimer, structu	99.92
1rjj_A	111	Expressed protein; beta barrel, homodimer, structu	99.92
3f44_A	220	Putative monooxygenase; YP_193413.1, structural ge	98.72
3mcs_A	219	Putative monooxygenase; structural genomics, joint	98.08
3kg0_A	128	Snoab; polyketide, anthracycline, oxygenase, cofac	97.46
3kkf_A	105	Putative antibiotic biosynthesis monooxygenase; st	97.42
2fb0_A	94	Conserved hypothetical protein; SAD, bacteroides t	97.25
2gff_A	106	LSRG protein; dimeric alpha+beta barrel ferredoxin	97.18
1x7v_A	99	PA3566 protein, APC5058; structural genomics, prot	97.17
3kkf_A	105	Putative antibiotic biosynthesis monooxygenase; st	97.15
1y0h_A	102	Hypothetical protein RV0793; ferredoxin-like fold,	97.12
1iuj_A	106	Hypothetical protein TT1380; structural genomics,	97.02
1q8b_A	105	Protein YJCS; structural genomics, PSI, protein st	97.01
2omo_A	124	DUF176; structural genomics, APC6266, PSI-2, prote	96.94
3gz7_A	115	Putative antibiotic biosynthesis monooxygenase; NP	96.93
2fb0_A	94	Conserved hypothetical protein; SAD, bacteroides t	96.93
3e8o_A	119	Uncharacterized protein with erredoxin-like fold;	96.9
2bbe_A	108	Hypothetical protein SO0527; MCSG, structural geno	96.88
3bm7_A	115	Protein of unknown function with ferredoxin-like;	96.85
1tuv_A	114	Protein YGIN; menadione oxidase, monooxygenase, CO	96.85
3e8o_A	119	Uncharacterized protein with erredoxin-like fold;	96.81
1tuv_A	114	Protein YGIN; menadione oxidase, monooxygenase, CO	96.8
2omo_A	124	DUF176; structural genomics, APC6266, PSI-2, prote	96.7
4dpo_A	119	Conserved protein; structural genomics, PSI-biolog	96.69
2pd1_A	104	Hypothetical protein; unknown function, NE2512 pro	96.66
2gff_A	106	LSRG protein; dimeric alpha+beta barrel ferredoxin	96.65
1q8b_A	105	Protein YJCS; structural genomics, PSI, protein st	96.63
1x7v_A	99	PA3566 protein, APC5058; structural genomics, prot	96.62
2pd1_A	104	Hypothetical protein; unknown function, NE2512 pro	96.6
3gz7_A	115	Putative antibiotic biosynthesis monooxygenase; NP	96.45
1y0h_A	102	Hypothetical protein RV0793; ferredoxin-like fold,	96.44
3f44_A	220	Putative monooxygenase; YP_193413.1, structural ge	96.43
1iuj_A	106	Hypothetical protein TT1380; structural genomics,	96.38
3kg0_A	128	Snoab; polyketide, anthracycline, oxygenase, cofac	96.38
2ril_A	99	Antibiotic biosynthesis monooxygenase; YP_00109527	96.36
2ftr_A	108	BH0200; structural genomics, joint center for stru	96.35
2jdj_A	105	HAPK, REDY-like protein; prodigiosin, biosynthesis	96.34
2zdo_A	109	Heme-degrading monooxygenase ISDG; ruffling, prote	96.24
3bm7_A	115	Protein of unknown function with ferredoxin-like;	96.22
3hf5_A	116	4-methylmuconolactone methylisomerase; ferredoxin,	96.16
2bbe_A	108	Hypothetical protein SO0527; MCSG, structural geno	96.14
1sqe_A	109	Hypothetical protein PG130; structural genomics, P	96.01
4dpo_A	119	Conserved protein; structural genomics, PSI-biolog	95.98
4hl9_A	118	Antibiotic biosynthesis monooxygenase; nysgrc, PSI	95.94
2go8_A	122	Hypothetical protein YQJZ; SR435, protein structur	95.73
4hl9_A	118	Antibiotic biosynthesis monooxygenase; nysgrc, PSI	95.69
4dn9_A	122	Antibiotic biosynthesis monooxygenase; structural	95.55
3tvz_A	172	Putative uncharacterized protein YHGC; putative mo	95.45
3hf5_A	116	4-methylmuconolactone methylisomerase; ferredoxin,	95.06
1tz0_A	114	Hypothetical protein; structural genomics, protein	94.97
3hx9_A	124	Protein RV3592; DI-heme, beta barrel, dimer, oxido	94.96
4dn9_A	122	Antibiotic biosynthesis monooxygenase; structural	94.77
2zdo_A	109	Heme-degrading monooxygenase ISDG; ruffling, prote	94.67
3fj2_A	186	Monooxygenase-like protein; structural genomics, j	94.62
2go8_A	122	Hypothetical protein YQJZ; SR435, protein structur	94.05
2ftr_A	108	BH0200; structural genomics, joint center for stru	93.84
3fj2_A	186	Monooxygenase-like protein; structural genomics, j	93.63
1sqe_A	109	Hypothetical protein PG130; structural genomics, P	92.99
3hx9_A	124	Protein RV3592; DI-heme, beta barrel, dimer, oxido	92.82
3fgv_A	106	Uncharacterized protein with ferredoxin-like fold;	92.73
1lq9_A	112	Actva-ORF6 monooxygenase; aromatic polyketides, ac	92.54
2ril_A	99	Antibiotic biosynthesis monooxygenase; YP_00109527	91.94
3lo3_A	94	Uncharacterized conserved protein; structural geno	91.12
3mcs_A	219	Putative monooxygenase; structural genomics, joint	89.72
3fgv_A	106	Uncharacterized protein with ferredoxin-like fold;	88.49
1tz0_A	114	Hypothetical protein; structural genomics, protein	88.48
3hhl_A	143	RPA0582; alpha-beta-barrel, structural genomics, P	87.86
3hhl_A	143	RPA0582; alpha-beta-barrel, structural genomics, P	87.51
1lq9_A	112	Actva-ORF6 monooxygenase; aromatic polyketides, ac	86.89
3bf4_A	127	Ethyl TERT-butyl ether degradation ETHD protein; f	86.76
3lo3_A	94	Uncharacterized conserved protein; structural geno	86.66
3tvz_A	172	Putative uncharacterized protein YHGC; putative mo	86.53
3bf4_A	127	Ethyl TERT-butyl ether degradation ETHD protein; f	85.15
2fiu_A	99	Conserved hypothetical protein; alpha-beta, dimeri	81.55
2fiu_A	99	Conserved hypothetical protein; alpha-beta, dimeri	81.43
2jdj_A	105	HAPK, REDY-like protein; prodigiosin, biosynthesis	81.3

>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}

Probab=99.95  E-value=2.5e-28  Score=194.48  Aligned_cols=100  Identities=19%  Similarity=0.188  Sum_probs=96.5

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||+||||||||+++++++++++++.|++|+++||+ |+++++|.|.+++++||||+++++|+|.|||++|+.||.|+++ 
T Consensus         4 Mi~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hP~H~~~-   81 (103)
T 2qyc_A            4 MFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDG-LLLYHFGENVAARSQGYTHATSSAFVDAAAHDAYQVCPAHVAM-   81 (103)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTT-EEEEEEEECCCTTCTTCCEEEEEEESSHHHHHHHTTCHHHHHH-
T ss_pred             eEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCC-eEEEEECCCCCCCCCCccEEEEEEECCHHHHHHHhCCHHHHHH-
Confidence            99999999999999999999999999999999999 9999999999999999999999999999999999999999985 


Q ss_pred             HhhhhccccceeEEeeEeCCCC
Q 022676          268 SNKFQPIIRTQLPVHFSVDPVG  289 (293)
Q Consensus       268 ~~~v~p~~e~i~vvDy~v~~~g  289 (293)
                      ++.++|++++++++||++++.|
T Consensus        82 ~~~~~~~~~~~~v~D~~~~~~~  103 (103)
T 2qyc_A           82 KAFMGPRIKRVVVYDGEVPAIG  103 (103)
T ss_dssp             HHHHGGGEEEEEEEEEEEECC-
T ss_pred             HHHHHHHhcCcEEEEEecCCcC
Confidence            8999999999999999998875

>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}

Probab=99.95  E-value=6.1e-28  Score=192.19  Aligned_cols=99  Identities=13%  Similarity=0.192  Sum_probs=94.0

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      +||+||||||||+++++++++++++.|.+|+++||||+++++|+|.+++++||||+|+++|+|+|||++|+.||+|+++ 
T Consensus         3 ~Mi~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hP~H~~~-   81 (103)
T 2qyc_A            3 TMFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAARSQGYTHATSSAFVDAAAHDAYQVCPAHVAM-   81 (103)
T ss_dssp             EEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCTTCTTCCEEEEEEESSHHHHHHHTTCHHHHHH-
T ss_pred             ceEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCCCCCCccEEEEEEECCHHHHHHHhCCHHHHHH-
Confidence            4999999999999999999999999999999999999999999999877789999999999999999999999999998 


Q ss_pred             HHhhccceeeeeeeeeeccc
Q 022676          152 KEHVMPYCHGLMNVDYETEV  171 (293)
Q Consensus       152 ~~~i~p~~e~~~vvDye~~v  171 (293)
                      +++++|++++++++||+.+.
T Consensus        82 ~~~~~~~~~~~~v~D~~~~~  101 (103)
T 2qyc_A           82 KAFMGPRIKRVVVYDGEVPA  101 (103)
T ss_dssp             HHHHGGGEEEEEEEEEEEEC
T ss_pred             HHHHHHHhcCcEEEEEecCC
Confidence            56789999999999998753

>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A

Probab=99.95  E-value=2.3e-27  Score=190.40  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=93.5

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC----CCCCccEEEEEEECCHHHHHhhccC
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE----NVENYTHGVFMRFQRKEHLVKFYEN  144 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~----~~~gythaL~s~F~s~edL~~Y~~H  144 (293)
                      ++++||+||||||||+++++++++++.+.|.+|+++||||+++++|++.++    .++||||+|+++|+|+|||++|+.|
T Consensus         4 ~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~h   83 (108)
T 1tr0_A            4 RTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLDS   83 (108)
T ss_dssp             CCCCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHTC
T ss_pred             CCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHHhCC
Confidence            466799999999999999999999999999999999999999999999984    3589999999999999999999999


Q ss_pred             cchHHHHHHhhccceeeeeeeeeec
Q 022676          145 PFYSKVLKEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       145 P~H~~vv~~~i~p~~e~~~vvDye~  169 (293)
                      |+|+++++ .++|++++++++||+.
T Consensus        84 P~H~~~~~-~~~~~~~~~~v~D~~~  107 (108)
T 1tr0_A           84 AALAAFAE-GFLPTLSQRLVIDYFL  107 (108)
T ss_dssp             HHHHHHHH-HHGGGEEEEEEEEEEC
T ss_pred             HHHHHHHH-HHHHHhCCcEEEEEEe
Confidence            99999985 5689999999999974

>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A

Probab=99.95  E-value=2.1e-27  Score=192.14  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=94.0

Q ss_pred             CCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC--CCCCccEEEEEEECCHHHHHhhccCcch
Q 022676           70 KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE--NVENYTHGVFMRFQRKEHLVKFYENPFY  147 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~--~~~gythaL~s~F~s~edL~~Y~~HP~H  147 (293)
                      ++.||+||||||||+++++++++++++.|.+|+++||||+++++|++.++  .++||||+|+++|+|+|||++|+.||+|
T Consensus         7 ~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP~H   86 (112)
T 1q4r_A            7 AKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAH   86 (112)
T ss_dssp             ---CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHH
T ss_pred             CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhCCHHH
Confidence            56699999999999999999999999999999999999999999999986  3589999999999999999999999999


Q ss_pred             HHHHHHhhccceeeeeeeeeecccCC
Q 022676          148 SKVLKEHVMPYCHGLMNVDYETEVED  173 (293)
Q Consensus       148 ~~vv~~~i~p~~e~~~vvDye~~v~~  173 (293)
                      +++++ .++|++++++++||+.++..
T Consensus        87 ~~~~~-~~~~~~~~~~v~D~~~~~~~  111 (112)
T 1q4r_A           87 VEFAT-IFLGSLDKVLVIDYKPTSVS  111 (112)
T ss_dssp             HHHHH-HHHHTEEEEEEEEECCCCSC
T ss_pred             HHHHH-HHHHHhcCcEEEeeeccccc
Confidence            99986 46799999999999987754

>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}

Probab=99.94  E-value=5.4e-27  Score=192.89  Aligned_cols=100  Identities=16%  Similarity=0.286  Sum_probs=93.4

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      .++.||+||||||||++++++++++++++|++|+++||||+++++|+|.+++++ |||+|+++|+|+|||++|+.||+|+
T Consensus        16 ~~~~mI~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~-~d~~l~~~F~s~edl~~Y~~HP~H~   94 (120)
T 3bde_A           16 YFQGMIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKID-YHFGFSMEFADQAAYTRYNDHPDHV   94 (120)
T ss_dssp             --CCCEEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSC-CCEEEEEEESSHHHHHHHHTSHHHH
T ss_pred             CCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCC-ccEEEEEEECCHHHHHHHhCCHHHH
Confidence            467799999999999999999999999999999999999999999999987545 9999999999999999999999999


Q ss_pred             HHHHHhhccceeeeeeeeeec
Q 022676          149 KVLKEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       149 ~vv~~~i~p~~e~~~vvDye~  169 (293)
                      ++++++++|++++++++||+.
T Consensus        95 ~~v~~~~~p~~e~~~vvD~e~  115 (120)
T 3bde_A           95 AFVRDRWVPEVEKFLEIDYVP  115 (120)
T ss_dssp             HHHHHTHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHHHhccEEEEEEEE
Confidence            997778999999999999975

>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}

Probab=99.94  E-value=1.3e-26  Score=189.36  Aligned_cols=103  Identities=13%  Similarity=0.197  Sum_probs=96.5

Q ss_pred             cccccCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccC
Q 022676           65 YNSEKKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYEN  144 (293)
Q Consensus        65 ~~~~~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~H  144 (293)
                      ..+...+.||+||||||||+++++++++++++.|.+|+++||||+++++|++.+++++||||+|+++|+|+|||++|+.|
T Consensus        13 ~~~~~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y~~h   92 (116)
T 3bgu_A           13 ENLYFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQDH   92 (116)
T ss_dssp             CCCCCSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHHHHS
T ss_pred             hhhhcCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHHhcC
Confidence            34556778999999999999999999999999999999999999999999999877789999999999999999999999


Q ss_pred             cchHHHHHHhhccceeeeeeeeee
Q 022676          145 PFYSKVLKEHVMPYCHGLMNVDYE  168 (293)
Q Consensus       145 P~H~~vv~~~i~p~~e~~~vvDye  168 (293)
                      |+|+++. ++++|++++++++||+
T Consensus        93 P~H~~~~-~~~~p~~~~~~v~D~~  115 (116)
T 3bgu_A           93 PDHRAAL-AIIAPMLADRVAVQFA  115 (116)
T ss_dssp             HHHHHHH-HHHGGGEEEEEEEEEE
T ss_pred             HHHHHHH-HHHHHHhCceEEEEEE
Confidence            9999964 6789999999999997

>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A

Probab=99.94  E-value=1.5e-26  Score=185.55  Aligned_cols=96  Identities=18%  Similarity=0.295  Sum_probs=91.8

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCC----CCCCCceEEEEEEeCCHHHHHhhcCChhH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFN----LSSEIYTHAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~S----p~~kGythafv~~F~s~eald~Y~~hp~H  263 (293)
                      ||+||||||||+++++++++++++.|.+|+++||| |+++++|.|.+    .+++||||+++++|+|.|||++|+.||.|
T Consensus         8 mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP~H   86 (108)
T 1tr0_A            8 LVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPS-MKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLDSAAL   86 (108)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTT-CCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHTCHHH
T ss_pred             cEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCc-eEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHHhCCHHH
Confidence            89999999999999999999999999999999999 99999999999    45899999999999999999999999999


Q ss_pred             HHHHHhhhhccccceeEEeeEe
Q 022676          264 KEMWSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       264 ~~~~~~~v~p~~e~i~vvDy~v  285 (293)
                      +++ ++.++|++++++|+||++
T Consensus        87 ~~~-~~~~~~~~~~~~v~D~~~  107 (108)
T 1tr0_A           87 AAF-AEGFLPTLSQRLVIDYFL  107 (108)
T ss_dssp             HHH-HHHHGGGEEEEEEEEEEC
T ss_pred             HHH-HHHHHHHhCCcEEEEEEe
Confidence            884 578999999999999985

>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}

Probab=99.94  E-value=2e-26  Score=188.87  Aligned_cols=98  Identities=20%  Similarity=0.251  Sum_probs=90.1

Q ss_pred             CCCcEEEEEEEEecCCCCHHHH----HHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCc
Q 022676           70 KRKVVEHICLLKAKKDLSEEEE----KDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENP  145 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~----~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP  145 (293)
                      ..+||+||||||||++++++++    +++.+.|.+|+++||||+++++|++.++ .+||||+|+++|+|+|||++|+.||
T Consensus        17 ~~~mI~HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~-~~~yd~~l~~~F~s~e~l~~Y~~HP   95 (118)
T 3fmb_A           17 FQGMVKHIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNP-GETWNIALYSEFDNLDDVKFYATHP   95 (118)
T ss_dssp             CCSCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCT-TCCCCEEEEEEESSHHHHHHHHHSH
T ss_pred             CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCC-CCCceEEEEEEECCHHHHHHHhCCH
Confidence            5679999999999999999975    4556789999999999999999999885 6799999999999999999999999


Q ss_pred             chHHHHHHhhccceeeeeeeeeec
Q 022676          146 FYSKVLKEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       146 ~H~~vv~~~i~p~~e~~~vvDye~  169 (293)
                      +|+++++ +++|++++++++||+.
T Consensus        96 ~H~~~~~-~~~p~~e~~~vvDye~  118 (118)
T 3fmb_A           96 EHVAAGK-ILAETKESRACVDYEF  118 (118)
T ss_dssp             HHHHHHH-TTTTTEEEEEEEEEEC
T ss_pred             hHHHHHH-HHHHhhcccEEEEEEC
Confidence            9999987 7899999999999983

>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}

Probab=99.94  E-value=2.5e-26  Score=188.72  Aligned_cols=99  Identities=12%  Similarity=0.168  Sum_probs=90.9

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC-----CCCCccEEEEEEECCHHHHHhhcc
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE-----NVENYTHGVFMRFQRKEHLVKFYE  143 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~-----~~~gythaL~s~F~s~edL~~Y~~  143 (293)
                      .++.||+||||||||++++++++++++++|++|+ +||||+++++|+|.++     .++||||+|+++|+|+|||++|+.
T Consensus        16 ~~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~-~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~~   94 (120)
T 3bn7_A           16 YFQGMLFHQVFFWLKNPGDKADRDKLIAGLKALK-AIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYRD   94 (120)
T ss_dssp             ---CCEEEEEEEEESSTTCHHHHHHHHHHHHGGG-GSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHHHT
T ss_pred             CCCCcEEEEEEEEECCCCCHHHHHHHHHHHHhcc-CCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHHhC
Confidence            3567999999999999999999999999999999 8999999999999985     268999999999999999999999


Q ss_pred             CcchHHHHHHhhccceeeeeeeeeec
Q 022676          144 NPFYSKVLKEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       144 HP~H~~vv~~~i~p~~e~~~vvDye~  169 (293)
                      ||+|+++++ +++|++++++++||+.
T Consensus        95 HP~H~~~~~-~~~p~~e~~~v~D~~~  119 (120)
T 3bn7_A           95 HPLLQKFVA-DCSHLWSKVVVYDSMS  119 (120)
T ss_dssp             CHHHHHHHH-HHGGGEEEEEEEEEEC
T ss_pred             CHHHHHHHH-HHHHHhccEEEEEEee
Confidence            999999985 6799999999999974

>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A

Probab=99.94  E-value=1.8e-26  Score=186.62  Aligned_cols=102  Identities=19%  Similarity=0.219  Sum_probs=94.1

Q ss_pred             cccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC--CCCCceEEEEEEeCCHHHHHhhcCChh
Q 022676          185 FNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL--SSEIYTHAVVIRLRSVEAFEMFVGSSD  262 (293)
Q Consensus       185 ~~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp--~~kGythafv~~F~s~eald~Y~~hp~  262 (293)
                      +.-||+||||||||+++++++++++++.|.+|+++||| |+++++|.|.++  +++||||+|+++|+|.|||++|+.||.
T Consensus         7 ~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP~   85 (112)
T 1q4r_A            7 AKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEP-MKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPA   85 (112)
T ss_dssp             ---CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTT-CCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHH
T ss_pred             CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCc-eEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhCCHH
Confidence            34599999999999999999999999999999999999 999999999997  679999999999999999999999999


Q ss_pred             HHHHHHhhhhccccceeEEeeEeCCC
Q 022676          263 YKEMWSNKFQPIIRTQLPVHFSVDPV  288 (293)
Q Consensus       263 H~~~~~~~v~p~~e~i~vvDy~v~~~  288 (293)
                      |+++ .+.++|++++++++||+++.+
T Consensus        86 H~~~-~~~~~~~~~~~~v~D~~~~~~  110 (112)
T 1q4r_A           86 HVEF-ATIFLGSLDKVLVIDYKPTSV  110 (112)
T ss_dssp             HHHH-HHHHHHTEEEEEEEEECCCCS
T ss_pred             HHHH-HHHHHHHhcCcEEEeeecccc
Confidence            9985 578899999999999998654

>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}

Probab=99.93  E-value=1.7e-26  Score=188.65  Aligned_cols=98  Identities=19%  Similarity=0.415  Sum_probs=94.7

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKE  265 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~  265 (293)
                      ..||+||||||||+++++++++++++.|++|+++||| |+++++|.|.+++++||||+|+++|+|.|||++|+.||.|++
T Consensus        19 ~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~-i~~~~~G~~~s~~~~g~d~~l~~~F~s~edl~~Y~~hP~H~~   97 (116)
T 3bgu_A           19 GMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPE-LKNYAFGADLGLAAGNYDFAVVADLDGEDGFRAYQDHPDHRA   97 (116)
T ss_dssp             SCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTT-EEEEEEEECCSCSTTCCSEEEEEEEEHHHHHHHHHHSHHHHH
T ss_pred             CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCc-eEEEEEccCCCCCCCCeeEEEEEEECCHHHHHHHhcCHHHHH
Confidence            4599999999999999999999999999999999999 999999999999999999999999999999999999999998


Q ss_pred             HHHhhhhccccceeEEeeEe
Q 022676          266 MWSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       266 ~~~~~v~p~~e~i~vvDy~v  285 (293)
                       +++.++|++++++|+||++
T Consensus        98 -~~~~~~p~~~~~~v~D~~i  116 (116)
T 3bgu_A           98 -ALAIIAPMLADRVAVQFAL  116 (116)
T ss_dssp             -HHHHHGGGEEEEEEEEEEC
T ss_pred             -HHHHHHHHhCceEEEEEEC
Confidence             7899999999999999984

>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}

Probab=99.93  E-value=5e-26  Score=187.11  Aligned_cols=100  Identities=17%  Similarity=0.293  Sum_probs=91.8

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC--CCCCccEEEEEEECCHHHHHhhccCcc
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE--NVENYTHGVFMRFQRKEHLVKFYENPF  146 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~--~~~gythaL~s~F~s~edL~~Y~~HP~  146 (293)
                      .++.||+||||||||+++++++++++++.|.+|+++||||+++++|++.++  .+++|||+|+++|+|+|||++|+.||+
T Consensus        16 ~~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~hP~   95 (121)
T 3bb5_A           16 YFQGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAVHPT   95 (121)
T ss_dssp             ---CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHHSHH
T ss_pred             cCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHcCHh
Confidence            457799999999999999999999999999999999999999999999985  458999999999999999999999999


Q ss_pred             hHHHHHHhhccce----eeeeeeeeec
Q 022676          147 YSKVLKEHVMPYC----HGLMNVDYET  169 (293)
Q Consensus       147 H~~vv~~~i~p~~----e~~~vvDye~  169 (293)
                      |+++ +++++|++    ++++++||+.
T Consensus        96 H~~~-~~~~~p~~~gg~~~~~v~D~~~  121 (121)
T 3bb5_A           96 HQRA-GGMLVASCRNGADGILVVDLEV  121 (121)
T ss_dssp             HHHH-HHHHHHTBTTGGGGEEEEEEEC
T ss_pred             HHHH-HHHHHHHhCcCcCCEEEEeEEC
Confidence            9997 56789999    9999999973

>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}

Probab=99.93  E-value=1e-25  Score=185.21  Aligned_cols=98  Identities=8%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      .||+||||||||+++++++++++++.|++|+++||| |+++++|.|.+++++ |||||+++|+|.|||++|+.||.|+++
T Consensus        19 ~mI~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~-I~~~~vG~~~~~~~~-~d~~l~~~F~s~edl~~Y~~HP~H~~~   96 (120)
T 3bde_A           19 GMIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRG-VTHFEQLRQISPKID-YHFGFSMEFADQAAYTRYNDHPDHVAF   96 (120)
T ss_dssp             CCEEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTT-CEEEEEEECCCSSSC-CCEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred             CcEEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCc-eEEEEEccCCCCCCC-ccEEEEEEECCHHHHHHHhCCHHHHHH
Confidence            499999999999999999999999999999999999 999999999999766 999999999999999999999999996


Q ss_pred             HHhhhhccccceeEEeeEeC
Q 022676          267 WSNKFQPIIRTQLPVHFSVD  286 (293)
Q Consensus       267 ~~~~v~p~~e~i~vvDy~v~  286 (293)
                      +++.++|++++++++||++.
T Consensus        97 v~~~~~p~~e~~~vvD~e~~  116 (120)
T 3bde_A           97 VRDRWVPEVEKFLEIDYVPL  116 (120)
T ss_dssp             HHHTHHHHEEEEEEEEECCC
T ss_pred             HHHHHHHHhccEEEEEEEEe
Confidence            68999999999999999864

>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}

Probab=99.93  E-value=1.1e-25  Score=184.91  Aligned_cols=98  Identities=11%  Similarity=0.071  Sum_probs=91.4

Q ss_pred             cccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC-----CCCCceEEEEEEeCCHHHHHhhcC
Q 022676          185 FNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL-----SSEIYTHAVVIRLRSVEAFEMFVG  259 (293)
Q Consensus       185 ~~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp-----~~kGythafv~~F~s~eald~Y~~  259 (293)
                      ...||+||||||||+++++++++++++.|++|+ +||| |+++++|.|.++     +++||||||+++|+|.|||++|+.
T Consensus        17 ~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~-~Ip~-i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~~   94 (120)
T 3bn7_A           17 FQGMLFHQVFFWLKNPGDKADRDKLIAGLKALK-AIDV-IQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYRD   94 (120)
T ss_dssp             --CCEEEEEEEEESSTTCHHHHHHHHHHHHGGG-GSTT-CSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHHHT
T ss_pred             CCCcEEEEEEEEECCCCCHHHHHHHHHHHHhcc-CCCC-eEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHHhC
Confidence            345999999999999999999999999999999 8999 999999999995     389999999999999999999999


Q ss_pred             ChhHHHHHHhhhhccccceeEEeeEe
Q 022676          260 SSDYKEMWSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       260 hp~H~~~~~~~v~p~~e~i~vvDy~v  285 (293)
                      ||.|+++ ++.++|++++++|+||+.
T Consensus        95 HP~H~~~-~~~~~p~~e~~~v~D~~~  119 (120)
T 3bn7_A           95 HPLLQKF-VADCSHLWSKVVVYDSMS  119 (120)
T ss_dssp             CHHHHHH-HHHHGGGEEEEEEEEEEC
T ss_pred             CHHHHHH-HHHHHHHhccEEEEEEee
Confidence            9999884 579999999999999975

>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}

Probab=99.93  E-value=9.8e-26  Score=185.37  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC--CCCCceEEEEEEeCCHHHHHhhcCChhH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL--SSEIYTHAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp--~~kGythafv~~F~s~eald~Y~~hp~H  263 (293)
                      ..||+||||||||+++++++++++++.|.+|+++||| |+++++|.|.++  +++||||+|+++|+|.|||++|+.||+|
T Consensus        18 ~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~hP~H   96 (121)
T 3bb5_A           18 QGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPG-LTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAVHPTH   96 (121)
T ss_dssp             -CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTT-EEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHHSHHH
T ss_pred             CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHcCHhH
Confidence            4599999999999999999999999999999999999 999999999996  6899999999999999999999999999


Q ss_pred             HHHHHhhhhccc----cceeEEeeEe
Q 022676          264 KEMWSNKFQPII----RTQLPVHFSV  285 (293)
Q Consensus       264 ~~~~~~~v~p~~----e~i~vvDy~v  285 (293)
                      ++ +++.++|++    ++++|+||++
T Consensus        97 ~~-~~~~~~p~~~gg~~~~~v~D~~~  121 (121)
T 3bb5_A           97 QR-AGGMLVASCRNGADGILVVDLEV  121 (121)
T ss_dssp             HH-HHHHHHHTBTTGGGGEEEEEEEC
T ss_pred             HH-HHHHHHHHhCcCcCCEEEEeEEC
Confidence            98 689999999    9999999985

>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}

Probab=99.92  E-value=2.1e-25  Score=182.88  Aligned_cols=95  Identities=13%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             ceeEEEEEEecCCCCCChHH----HHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhH
Q 022676          188 GVEFVLLISFIQSAFGGPAE----DALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~----~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H  263 (293)
                      ||+||||||||+++++++++    ++.+.|++|+++||| |+++++|.|.|+ ++||||+|+++|+|.|||++|+.||+|
T Consensus        20 mI~HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~-i~~~~vG~~~s~-~~~yd~~l~~~F~s~e~l~~Y~~HP~H   97 (118)
T 3fmb_A           20 MVKHIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISV-IRKIEVGLNMNP-GETWNIALYSEFDNLDDVKFYATHPEH   97 (118)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTT-CSEEEEEECCCT-TCCCCEEEEEEESSHHHHHHHHHSHHH
T ss_pred             CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCC-eEEEEEeccCCC-CCCceEEEEEEECCHHHHHHHhCCHhH
Confidence            99999999999999998865    556789999999999 999999999985 579999999999999999999999999


Q ss_pred             HHHHHhhhhccccceeEEeeEe
Q 022676          264 KEMWSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       264 ~~~~~~~v~p~~e~i~vvDy~v  285 (293)
                      +++ .+.++|++++++|+||++
T Consensus        98 ~~~-~~~~~p~~e~~~vvDye~  118 (118)
T 3fmb_A           98 VAA-GKILAETKESRACVDYEF  118 (118)
T ss_dssp             HHH-HHTTTTTEEEEEEEEEEC
T ss_pred             HHH-HHHHHHhhcccEEEEEEC
Confidence            985 559999999999999985

>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4

Probab=99.92  E-value=3.5e-25  Score=178.60  Aligned_cols=99  Identities=17%  Similarity=0.278  Sum_probs=90.8

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecC-CC--CCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRIS-NE--NVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~-s~--~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      .||+||||||||+++   +++++++.+.+|+++||||+++++|++. ++  ..+||||+|+++|+|+|||++|+.||+|+
T Consensus         4 ~Mi~HiVlfklk~~~---~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~   80 (111)
T 1rjj_A            4 SGFKHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHV   80 (111)
T ss_dssp             SEEEEEEEEECSSCC---CHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHH
T ss_pred             CcEEEEEEEEECCcc---hHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHH
Confidence            499999999999998   5789999999999999999999999998 75  35899999999999999999999999999


Q ss_pred             HHHHHhhccceeeeeeeeeecccCCC
Q 022676          149 KVLKEHVMPYCHGLMNVDYETEVEDD  174 (293)
Q Consensus       149 ~vv~~~i~p~~e~~~vvDye~~v~~~  174 (293)
                      ++++. ++|++++++++||+.++...
T Consensus        81 ~~~~~-~~~~~~~~~v~D~~~~~~~~  105 (111)
T 1rjj_A           81 EFSAA-FTAVIDKIVLLDFPVAAVKS  105 (111)
T ss_dssp             HHHHH-HHHTCSEEEEEEEEECTTCC
T ss_pred             HHHHH-HHHHhcceEEEEeEcceecc
Confidence            99875 68999999999999877763

>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4

Probab=99.92  E-value=6.7e-25  Score=176.93  Aligned_cols=95  Identities=17%  Similarity=0.350  Sum_probs=89.2

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccC-CC--CCCCceEEEEEEeCCHHHHHhhcCChhHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNF-NL--SSEIYTHAVVIRLRSVEAFEMFVGSSDYK  264 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~-Sp--~~kGythafv~~F~s~eald~Y~~hp~H~  264 (293)
                      ||+||||||||+++   +++++++.+++|+++||| |+++++|.|. ++  +++||||+++++|+|.|||++|+.||+|+
T Consensus         5 Mi~HiVlfklk~~~---~~~~~~~~l~~L~~~ip~-i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~   80 (111)
T 1rjj_A            5 GFKHLVVVKFKEDT---KVDEILKGLENLVSQIDT-VKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHV   80 (111)
T ss_dssp             EEEEEEEEECSSCC---CHHHHHHHHHHHHGGGGG-SCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHH
T ss_pred             cEEEEEEEEECCcc---hHHHHHHHHHHHHhcCCc-eEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHH
Confidence            89999999999998   689999999999999999 9999999999 86  68999999999999999999999999998


Q ss_pred             HHHHhhhhccccceeEEeeEeCC
Q 022676          265 EMWSNKFQPIIRTQLPVHFSVDP  287 (293)
Q Consensus       265 ~~~~~~v~p~~e~i~vvDy~v~~  287 (293)
                      ++ .+.++|++++++++||+++.
T Consensus        81 ~~-~~~~~~~~~~~~v~D~~~~~  102 (111)
T 1rjj_A           81 EF-SAAFTAVIDKIVLLDFPVAA  102 (111)
T ss_dssp             HH-HHHHHHTCSEEEEEEEEECT
T ss_pred             HH-HHHHHHHhcceEEEEeEcce
Confidence            85 56889999999999999754

>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}

Probab=98.72  E-value=1.1e-06  Score=78.19  Aligned_cols=205  Identities=12%  Similarity=0.069  Sum_probs=148.4

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      ++|.+|+-++.|++-.++-.+.+.+.+.+...+=||-+.+.++.+..   ++-+..++=.|.|.+|+++-...|..+++.
T Consensus         5 ~pi~~i~~~~vkp~~~~~f~~~~~~~~~~s~~~E~G~l~y~~~~~~~---~p~~~~~~E~y~d~~A~~~H~~s~h~~~~~   81 (220)
T 3f44_A            5 TPIFKIKKLTIAENDRSEYIRYAEKNMHDSIPAEEGTLLIGSGHDDA---HGEDNYEIEVFRNKGAEDLHIAGSHADDFV   81 (220)
T ss_dssp             CCEEEEEEEEECGGGHHHHHHHHHHHHHHHTTTSTTEEEEEEEEETT---EEEEEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             CcEEEEEEEEECcchHHHHHHHHHHHhhhhhccCCCeEEEEEEecCC---CCcEEEEEEEECCHHHHHHHhcCHHHHHHH
Confidence            46899999999887665555555554444433359999999998653   457899999999999999999999999998


Q ss_pred             HHhhccceeeeeeeeeeccc--CCCccccccCCCCcccceeEEEEEEecCCCCCChHHHHH-HHHHHhhhhcCcceeeEE
Q 022676          152 KEHVMPYCHGLMNVDYETEV--EDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDAL-ESLKRLTAEFPSLIVQST  228 (293)
Q Consensus       152 ~~~i~p~~e~~~vvDye~~v--~~~~~~~~~~g~~~~~~i~HIVl~kFk~~~s~e~i~~l~-~~l~~Lk~~iPg~I~~~t  228 (293)
                      +. +.+++.+...++-.++.  ..........   =+-||..|+.++.|++.. ++..+++ +.+.....+=|| .+++.
T Consensus        82 ~~-~~~~l~~~~~~~l~p~~l~~k~~~~~~~~---~~~mI~~ia~~~vkpg~~-~~f~~~l~~~~~~~~r~EpG-cl~y~  155 (220)
T 3f44_A           82 ET-VNKIATKQKVIDLHPEVITTKAQRALNSY---ADNFVMRLIKVEVKDADA-EKFSHAVKKEMTTSMASEPG-MEIMM  155 (220)
T ss_dssp             HH-HHHHEEEEEEEEEEEEEEEECCC----------CCCEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHHCTT-EEEEE
T ss_pred             HH-HHHHhhCCceeeeeeEEeecchhhhhhcC---CCceEEEEEEEEECCCCH-HHHHHHHHHHHHHHHhCCCC-cEEEE
Confidence            76 57888887777665543  2221111111   256899999999997543 2233333 344444445699 99999


Q ss_pred             eeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccceeEEeeEeCCCC
Q 022676          229 QGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVG  289 (293)
Q Consensus       229 ~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i~vvDy~v~~~g  289 (293)
                      +..+..   ..-+..++-.++|.+++++....|.. +.+.+.+.+++++.-+..+.....|
T Consensus       156 ~~~d~~---~p~~f~~~E~w~d~~Al~aH~~s~hf-~~~~~~~~~ll~~~~v~~l~p~~l~  212 (220)
T 3f44_A          156 SGTNID---NPNEWYFIEVYANDEAYDIHVKTPHY-KEYIEETDGMVKSRDVKTLVRDTLA  212 (220)
T ss_dssp             EEEETT---EEEEEEEEEEESSHHHHHHHTTSHHH-HHHHHHTTTTEEEEEEEEEEEEEEE
T ss_pred             EEEcCC---CCCEEEEEEEECCHHHHHHHhcCHHH-HHHHHHHHHHhcCCceEEeechhhh
Confidence            998753   33468899999999999999999955 5578899999999888887765544

>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}

Probab=98.08  E-value=0.00072  Score=60.24  Aligned_cols=195  Identities=8%  Similarity=0.092  Sum_probs=138.7

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      ++|..|+-++.|++--++-.+.+.+-+.....+=||-+.+.+..+..   ++-+..|+=.|+|.+|+++=...|..+++.
T Consensus         5 ~pi~~ia~~~vkp~~~~~f~~~~~~~~~~s~r~EpG~l~y~~~~~~~---~p~~fv~~E~y~d~~A~~~H~~s~Hf~~f~   81 (219)
T 3mcs_A            5 VPILNVYDFEVKKDKETSYKSATEDYVNKTMGVEQGVLGLFAATDER---DKTTSYIVEIYNDYLAFSNHTKNQASKDFK   81 (219)
T ss_dssp             CCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECS---SSCEEEEEEEESSHHHHHHHHHSHHHHHHH
T ss_pred             ccEEEEEEEEECcCcHHHHHHHHHHHhhhhhhcCCCeEEEEEEeeCC---CCCEEEEEEEECCHHHHHHHhCCHHHHHHH
Confidence            46889999999887665555555554444423359999999998764   467899999999999999999999999998


Q ss_pred             HHhhccceeeee-eeeeecccCCCccccccCCCCcccceeEEEEEEecCCCCCChHHHHHHHHHHhhh---hcCcceeeE
Q 022676          152 KEHVMPYCHGLM-NVDYETEVEDDILPIFRKGEDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTA---EFPSLIVQS  227 (293)
Q Consensus       152 ~~~i~p~~e~~~-vvDye~~v~~~~~~~~~~g~~~~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~---~iPg~I~~~  227 (293)
                      +. +.+.+.++. ..++.+...+|-.+.  .+   ..++.=|+.++.|++.    .+++.+.+..+..   .=|| .+.+
T Consensus        82 ~~-~~~~l~~~~~~~~~~~~~~~~k~~~--~~---~~~~~via~~~vkp~~----~e~~~~~~~~~~~~sr~E~G-cl~y  150 (219)
T 3mcs_A           82 AV-IPQIAEGNLNSAEIDVQIAKDKKIE--QN---DNTFAVYTVIDVKPEN----DKEFAEIIKNIVETTFNEEG-TLLV  150 (219)
T ss_dssp             HH-HHHHEEEEEEEEEEEEEEEEECCCC--CC---TTCEEEEEEEEECGGG----HHHHHHHHHHHHHHHHHSTT-EEEE
T ss_pred             HH-HHHHHhCCcccceeeEEeccccccc--CC---CCcEEEEEEEEECcCc----HHHHHHHHHHHHHHHcCCCC-eEEE
Confidence            76 567877644 444554422222121  11   2245556667777643    4555555544444   3499 9999


Q ss_pred             EeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccceeEEeeE
Q 022676          228 TQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFS  284 (293)
Q Consensus       228 t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i~vvDy~  284 (293)
                      .+..+...   .=+..|+-.+.|.+|+++-...| |-+.+.+.+.+++++.-+.+..
T Consensus       151 ~~~~~~~~---p~~f~~~E~w~d~~A~~aH~~s~-Hf~~~~~~~~~~l~~~~~~~l~  203 (219)
T 3mcs_A          151 YLGTDRRN---FNKWCLFEVYKDIDSYLNHRSAK-YFKDYITQTKDMIAGKKRAELQ  203 (219)
T ss_dssp             EEEEETTE---EEEEEEEEEESSHHHHHHHHTSH-HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEecCCC---CCEEEEEEEECCHHHHHHHhcCH-HHHHHHHHHHHHHhCCceeecc
Confidence            99987643   23577999999999999999998 6566888999999987766654

>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A

Probab=97.46  E-value=0.0025  Score=51.98  Aligned_cols=84  Identities=8%  Similarity=0.025  Sum_probs=70.1

Q ss_pred             CCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH
Q 022676           70 KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK  149 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~  149 (293)
                      ...||.=|..|++|++  .++..+.+..+..+..+.||-+..++.+...   +.-.+.++++++|+|+++++...|.+++
T Consensus        20 ~~~mi~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~---~p~~yv~~~~W~s~ea~~a~~~S~~f~a   94 (128)
T 3kg0_A           20 DADEVTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRHTLLRERD---KDNSYVNIAVWTDHDAFRRALAQPGFLP   94 (128)
T ss_dssp             -CCCEEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEEEEEECTT---CSSEEEEEEEESSHHHHHHHHHCGGGHH
T ss_pred             CCCcEEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHcCHHHHH
Confidence            3459999999999998  7777788788777778899999999998663   3456799999999999999999999999


Q ss_pred             HHHHhhccce
Q 022676          150 VLKEHVMPYC  159 (293)
Q Consensus       150 vv~~~i~p~~  159 (293)
                      .++.+ .+.+
T Consensus        95 ~~~~l-~~~~  103 (128)
T 3kg0_A           95 HATAL-RALS  103 (128)
T ss_dssp             HHHHH-HHHE
T ss_pred             HHHhh-hhhc
Confidence            88764 4443

>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.0024  Score=49.50  Aligned_cols=98  Identities=8%  Similarity=0.059  Sum_probs=74.7

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      .+||.-|+-++.|++-.++-.+.+.+.+.....+=||-+.+.+.++..   ++-.+.++-+++|.+++++....|..+++
T Consensus         3 ~~mi~via~~~vkpg~~~~f~~~l~~~~~~s~r~EpGcl~y~~~~~~~---~p~~~~~~E~w~d~~a~~~H~~s~~~~~~   79 (105)
T 3kkf_A            3 ENNMVRLSRIIIDPERLEEYNAYLKEEIEVSMRLEPGVLVLYAVAEKE---RPNHVTILEIYADEAAYKSHIATPHFKKY   79 (105)
T ss_dssp             GGCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCTTEEEEEEEECSS---CTTEEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred             CCCEEEEEEEEECcCcHHHHHHHHHHHHHHHHhCCCCcEEEEEEEeCC---CCCEEEEEEEECCHHHHHHHhcCHHHHHH
Confidence            359999999999987544333333333334324579999999988653   46789999999999999999999999999


Q ss_pred             HHHhhccceeeeeeeeeecccC
Q 022676          151 LKEHVMPYCHGLMNVDYETEVE  172 (293)
Q Consensus       151 v~~~i~p~~e~~~vvDye~~v~  172 (293)
                      .+. +.+.+++...+...+...
T Consensus        80 ~~~-~~~~l~~~~~~~l~pi~~  100 (105)
T 3kkf_A           80 KEG-TLDMVQMLELIDATPLIP  100 (105)
T ss_dssp             HHH-HGGGEEEEEEEEECCSST
T ss_pred             HHH-HHHHhhCcceEEEeecCc
Confidence            876 579999887777765433

>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}

Probab=97.25  E-value=0.0065  Score=45.44  Aligned_cols=86  Identities=9%  Similarity=0.086  Sum_probs=66.7

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.=++-++.|++- .++..+.+..+.....+-||-+.+.+.++..   ++-.+.++-+++|.++++++...|..+++.
T Consensus         3 ~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG~l~~~~~~~~~---~p~~~~~~e~w~~~~a~~~h~~s~~~~~~~   78 (94)
T 2fb0_A            3 SMIRLNVFVRVNETN-REKAIEAAKELTACSLKEEGCIAYDTFESST---RRDVFMICETWQNAEVLAAHEKTAHFAQYV   78 (94)
T ss_dssp             CCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTTEEEEEEEECSS---CTTEEEEEEEESSHHHHHHHTTSHHHHHHH
T ss_pred             cEEEEEEEEEECccc-HHHHHHHHHHHHHHHhcCCCceEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhCCHHHHHHH
Confidence            488889999999885 4455555555544445689999999998764   345899999999999999999999999988


Q ss_pred             HHhhccceeee
Q 022676          152 KEHVMPYCHGL  162 (293)
Q Consensus       152 ~~~i~p~~e~~  162 (293)
                      +. +.+.+.+.
T Consensus        79 ~~-~~~~l~~~   88 (94)
T 2fb0_A           79 GI-IQELAEMK   88 (94)
T ss_dssp             HH-HHHHSEEE
T ss_pred             HH-HHHHhcCC
Confidence            76 45666543

>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A

Probab=97.18  E-value=0.0058  Score=47.12  Aligned_cols=85  Identities=9%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ||.=++-++.|++- .++..+.+..+.+...+-||-+.+.+.++..   ++-.+.++.+|+|.++++++...|..+++.+
T Consensus         1 Mi~vi~~~~vkpg~-~~~~~~~~~~~~~~~r~epG~l~~~~~~~~~---~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~   76 (106)
T 2gff_A            1 MHVTLVEINVKEDK-VDQFIEVFRANHLGSIREAGNLRFDVLRDEH---IPTRFYIYEAYTDEAAVAIHKTTPHYLQCVE   76 (106)
T ss_dssp             CEEEEEEEEBCGGG-HHHHHHHHHHHHHHHHTSTTEEEEEEEEESS---CTTEEEEEEEESSHHHHHHHTTSHHHHHHHH
T ss_pred             CEEEEEEEEECcCC-HHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhcCHHHHHHHH
Confidence            67788889998874 4444555555544445689999999998764   3468999999999999999999999999987


Q ss_pred             Hhhccceeee
Q 022676          153 EHVMPYCHGL  162 (293)
Q Consensus       153 ~~i~p~~e~~  162 (293)
                      . +.+.+.+.
T Consensus        77 ~-~~~~l~~~   85 (106)
T 2gff_A           77 Q-LAPLMTGP   85 (106)
T ss_dssp             H-HGGGBSSC
T ss_pred             H-HHHHhcCC
Confidence            6 46777653

>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11

Probab=97.17  E-value=0.011  Score=44.55  Aligned_cols=88  Identities=9%  Similarity=0.076  Sum_probs=67.4

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.-++-++.|++- .++..+.+..+.....+-||-+.+.+.++..   ++-.+.++.+++|.++++++...|..+++.
T Consensus         5 ~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG~l~~~~~~~~~---~p~~~~~~e~w~~~~a~~~h~~s~~~~~~~   80 (99)
T 1x7v_A            5 TPLTLIATITAAPGH-AEALERELRALVAPSRAEAGCLQYDLHQDRH---DSHLFYMIEQWRDDAALERHQNTEHFLRFS   80 (99)
T ss_dssp             SCEEEEEEEEECTTC-HHHHHHHHHHHHHHHHHSTTEEEEEEEECSS---CTTEEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             CcEEEEEEEEECCCC-HHHHHHHHHHHHHHHhCCCCceEEEEEecCC---CCCEEEEEEEECCHHHHHHHhcCHHHHHHH
Confidence            489999999999886 4445555555544445689999999998754   345789999999999999999999999988


Q ss_pred             HHhhccceeeeee
Q 022676          152 KEHVMPYCHGLMN  164 (293)
Q Consensus       152 ~~~i~p~~e~~~v  164 (293)
                      +. +.+......+
T Consensus        81 ~~-~~~~~~~~~v   92 (99)
T 1x7v_A           81 RG-NEALLQNVKI   92 (99)
T ss_dssp             TT-CGGGEEEEEE
T ss_pred             HH-HHHhcCCceE
Confidence            65 4566444433

>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.0062  Score=47.08  Aligned_cols=100  Identities=6%  Similarity=-0.007  Sum_probs=74.4

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHh-hhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRL-TAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYK  264 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~L-k~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~  264 (293)
                      |-||.-|+.++.|++.. ++..+++..+... ..+-|| .+++.+..+..   ..-+..++-.++|.+++++....|..+
T Consensus         3 ~~mi~via~~~vkpg~~-~~f~~~l~~~~~~s~r~EpG-cl~y~~~~~~~---~p~~~~~~E~w~d~~a~~~H~~s~~~~   77 (105)
T 3kkf_A            3 ENNMVRLSRIIIDPERL-EEYNAYLKEEIEVSMRLEPG-VLVLYAVAEKE---RPNHVTILEIYADEAAYKSHIATPHFK   77 (105)
T ss_dssp             GGCEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHHCTT-EEEEEEEECSS---CTTEEEEEEEESSHHHHHHHHTSHHHH
T ss_pred             CCCEEEEEEEEECcCcH-HHHHHHHHHHHHHHHhCCCC-cEEEEEEEeCC---CCCEEEEEEEECCHHHHHHHhcCHHHH
Confidence            35888899999987543 3333444433322 245799 99999887653   445788999999999999999999555


Q ss_pred             HHHHhhhhccccceeEEeeEeCCCCCc
Q 022676          265 EMWSNKFQPIIRTQLPVHFSVDPVGTE  291 (293)
Q Consensus       265 ~~~~~~v~p~~e~i~vvDy~v~~~g~~  291 (293)
                       .+.+.+.+++++.-+.....-+.|+.
T Consensus        78 -~~~~~~~~~l~~~~~~~l~pi~~~~~  103 (105)
T 3kkf_A           78 -KYKEGTLDMVQMLELIDATPLIPGLK  103 (105)
T ss_dssp             -HHHHHHGGGEEEEEEEEECCSSTTCC
T ss_pred             -HHHHHHHHHhhCcceEEEeecCcccc
Confidence             57789999999988888877677754

>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11

Probab=97.12  E-value=0.005  Score=46.69  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.-++-++.|++- .++..+.+..+.....+-||-+.+.+.++ ..   +-++.++.+++|.+++++....|..+++.
T Consensus         4 ~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG~l~~~~~~~-~~---~~~~~~~e~w~~~~a~~~h~~s~~~~~~~   78 (102)
T 1y0h_A            4 SPVAVIARFMPRPDA-RSALRALLDAMITPTRAEDGCRSYDLYES-AD---GGELVLFERYRSRIALDEHRGSPHYLNYR   78 (102)
T ss_dssp             SCEEEEEEECBCGGG-HHHHHHHHHHHHHHHHHSTTEEEEEEEEE-TT---SSCEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             ceEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEe-CC---CCEEEEEEEECCHHHHHHHhcChHHHHHH
Confidence            589899999998874 44445555555444456899999999988 43   35789999999999999999999999988


Q ss_pred             HHhhccceeee
Q 022676          152 KEHVMPYCHGL  162 (293)
Q Consensus       152 ~~~i~p~~e~~  162 (293)
                      +. +.+.+.+.
T Consensus        79 ~~-~~~~l~~~   88 (102)
T 1y0h_A           79 AQ-VGELLTRP   88 (102)
T ss_dssp             TT-SGGGBSSC
T ss_pred             HH-HHHHhcCC
Confidence            65 56777653

>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5

Probab=97.02  E-value=0.0057  Score=46.61  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ||.=|+-|++|++- .++..+.++.+.....+.||-+...+.++...   .-.+.++.+|+|.++++++...|.++++.+
T Consensus         1 Mi~vi~~~~v~~g~-~~~f~~~~~~~~~~~~~~pG~l~~~l~~~~~~---~~~~~~~~~W~s~~a~~a~~~s~~~~~~~~   76 (106)
T 1iuj_A            1 MFVTMNRIPVRPEY-AEQFEEAFRQRARLVDRMPGFIRNLVLRPKNP---GDPYVVMTLWESEEAFRAWTESPAFKEGHA   76 (106)
T ss_dssp             CEEEEEEECBCGGG-HHHHHHHHHHHGGGGTTSTTEEEEEEEEESST---TSCEEEEEEESCHHHHHHHHTSHHHHHHTT
T ss_pred             CEEEEEEEEeCcch-HHHHHHHHHHHHHHhccCCCceEEEEEecCCC---CCeEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence            56667777887764 45566666666666667899999999987642   357899999999999999999999999775


Q ss_pred             H
Q 022676          153 E  153 (293)
Q Consensus       153 ~  153 (293)
                      .
T Consensus        77 ~   77 (106)
T 1iuj_A           77 R   77 (106)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6

Probab=97.01  E-value=0.01  Score=45.86  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=69.4

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.-++-++.|++-..++..+.+..+.+...+-||-+.+.+.++..   ++-.+.++-+++|.+++++....|..+++.
T Consensus        12 ~mi~vi~~~~vkpg~d~~~f~~~l~~~~~~~r~epGcl~~~~~~~~~---~p~~~~~~E~w~d~~a~~~H~~s~~~~~~~   88 (105)
T 1q8b_A           12 SMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEP---SERKIMLWEIWENEEAVKIHFTKKHTIDVQ   88 (105)
T ss_dssp             CEEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTTEEEEEEEECCG---GGCEEEEEEEESSHHHHHHHTTSHHHHHHH
T ss_pred             eEEEEEEEEEECCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhcCHHHHHHH
Confidence            37999999999998746666666666655555689999999998753   345899999999999999999999999988


Q ss_pred             HHhhccceeee
Q 022676          152 KEHVMPYCHGL  162 (293)
Q Consensus       152 ~~~i~p~~e~~  162 (293)
                      +. +.+.+++.
T Consensus        89 ~~-~~~~l~~~   98 (105)
T 1q8b_A           89 KQ-ELTEVEWL   98 (105)
T ss_dssp             TT-TCEEEEEE
T ss_pred             HH-HHHHhhCh
Confidence            65 45666654

>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11

Probab=96.94  E-value=0.015  Score=46.66  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=69.8

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      ....||.=++-++.|++- .++..+++..+.+...+-||-+.+.+.++..   +.-.+.++-+|+|.++++++...|..+
T Consensus        19 ~~~~mi~vi~~~~vkpg~-~~~f~~~l~~~~~~sr~EpGcl~y~l~~~~~---dp~~f~~~E~W~d~eal~aH~~s~~~~   94 (124)
T 2omo_A           19 FQGHMYVTIVYASVKTDK-TEAFKEATRMNHEQSIREPGNMRFDILQSAD---DPTRFVLYEAYKTRKDAAAHKETAHYL   94 (124)
T ss_dssp             CCCSSEEEEEEEEBCGGG-HHHHHHHHHHHHHHHTTSTTEEEEEEEEESS---CTTEEEEEEEESSHHHHHHHTTSHHHH
T ss_pred             cCCceEEEEEEEEECcCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhCCHHHH
Confidence            345589999999999874 4455555555544445689999999998764   346899999999999999999999999


Q ss_pred             HHHHHhhccceeeee
Q 022676          149 KVLKEHVMPYCHGLM  163 (293)
Q Consensus       149 ~vv~~~i~p~~e~~~  163 (293)
                      ++.+. +.+.+.+..
T Consensus        95 ~~~~~-~~~ll~~~~  108 (124)
T 2omo_A           95 TWRDT-VADWMAEPR  108 (124)
T ss_dssp             HHHHH-HGGGBSSCC
T ss_pred             HHHHH-HHHHhcCCc
Confidence            99876 467777643

>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}

Probab=96.93  E-value=0.019  Score=45.68  Aligned_cols=90  Identities=9%  Similarity=0.059  Sum_probs=69.3

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHH-hhccCcchHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLV-KFYENPFYSKV  150 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~-~Y~~HP~H~~v  150 (293)
                      .||.=|+.+++|++-.++ ..+.+..+.....+-||-+.+.+.++..   ++-.+.++.+++|.++++ .|...|..+++
T Consensus        19 ~~i~via~~~vkpg~~~~-f~~~~~~~~~~~r~epGcl~y~l~r~~~---~p~~f~~~E~W~s~eal~~hf~~S~hf~~~   94 (115)
T 3gz7_A           19 GMIQEIASILVQPGREAD-FEAGVAQARPLFMRARGCHGVALHRSIE---APQRYTLVVDWETVDNHMVDFRQSADFQEW   94 (115)
T ss_dssp             SCEEEEEEEEBCTTCHHH-HHHHHHHHHHHHHTSTTEEEEEEEEESS---STTEEEEEEEESSHHHHHTTTTTSHHHHHH
T ss_pred             eEEEEEEEEEECCCCHHH-HHHHHHHHHHHHhcCCCeEEEEEEecCC---CCCEEEEEEEECCHHHHHHHHhcCHHHHHH
Confidence            588889999999886554 4444444555555689999999998764   345789999999999999 67999999998


Q ss_pred             HHHhhccceeeeeeee
Q 022676          151 LKEHVMPYCHGLMNVD  166 (293)
Q Consensus       151 v~~~i~p~~e~~~vvD  166 (293)
                      .+. +.|++++.-.+.
T Consensus        95 ~~~-~~~ll~~~p~i~  109 (115)
T 3gz7_A           95 RKL-VGECFAEPPQVH  109 (115)
T ss_dssp             HHH-HGGGBSSCCEEE
T ss_pred             HHH-HHHHhcCCCEEE
Confidence            876 578777654444

>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.013  Score=43.81  Aligned_cols=88  Identities=8%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKE  265 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~  265 (293)
                      ++||.-++.++.|++. .++..+++..+.....+-|| .+++.+..+..   ..-+..++.+++|.+++++...+|..++
T Consensus         2 ~~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG-~l~~~~~~~~~---~p~~~~~~e~w~~~~a~~~h~~s~~~~~   76 (94)
T 2fb0_A            2 NSMIRLNVFVRVNETN-REKAIEAAKELTACSLKEEG-CIAYDTFESST---RRDVFMICETWQNAEVLAAHEKTAHFAQ   76 (94)
T ss_dssp             CCCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTT-EEEEEEEECSS---CTTEEEEEEEESSHHHHHHHTTSHHHHH
T ss_pred             CcEEEEEEEEEECccc-HHHHHHHHHHHHHHHhcCCC-ceEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhCCHHHHH
Confidence            3578888888888764 34455555555544556799 99999988753   2347889999999999999999996655


Q ss_pred             HHHhhhhcccccee
Q 022676          266 MWSNKFQPIIRTQL  279 (293)
Q Consensus       266 ~~~~~v~p~~e~i~  279 (293)
                       +.+.+.++++.--
T Consensus        77 -~~~~~~~~l~~~p   89 (94)
T 2fb0_A           77 -YVGIIQELAEMKL   89 (94)
T ss_dssp             -HHHHHHHHSEEEE
T ss_pred             -HHHHHHHHhcCCc
Confidence             6778888887543

>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}

Probab=96.90  E-value=0.0094  Score=47.38  Aligned_cols=101  Identities=9%  Similarity=-0.019  Sum_probs=70.3

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      .||.=++.++.|++. .++..+++..+.+.-.+-|| .+++.+..+..   +.-+..++-+|+|.++++++...|..++ 
T Consensus        18 ~mi~via~~~vkpg~-~~~~~~~l~~~~~~~r~EpG-cl~y~l~~~~~---dp~~f~~~E~W~d~ea~~aH~~s~~~~~-   91 (119)
T 3e8o_A           18 TMVISHGTLSASAEH-AAHLRQLLVHIAQATRQEDG-CLLYLVSEDLS---QPGHFLITEHWDNLGAMHTHLALPGVTQ-   91 (119)
T ss_dssp             CCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTT-EEEEEEEEETT---STTEEEEEEEESSHHHHHHHHTCHHHHH-
T ss_pred             ceEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCC-cEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHcCHHHHH-
Confidence            377778888888764 34455555555555556799 99999988753   3347889999999999999999996655 


Q ss_pred             HHhhhhccccceeEEeeEeCCCCCcCC
Q 022676          267 WSNKFQPIIRTQLPVHFSVDPVGTEIM  293 (293)
Q Consensus       267 ~~~~v~p~~e~i~vvDy~v~~~g~~~~  293 (293)
                      +.+.+.+++..-..+.+--.-.|..||
T Consensus        92 ~~~~~~~ll~~~~~i~~~~~~~~~~~~  118 (119)
T 3e8o_A           92 AIDALKHLNVTDLKITAYEAGEAINIM  118 (119)
T ss_dssp             HHHHHHHTTCCCCEEEEEEBCSCEEEE
T ss_pred             HHHHHHHHhcCCCEEEEEecccccccC
Confidence            777899996544333333333444444

>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}

Probab=96.88  E-value=0.014  Score=45.11  Aligned_cols=86  Identities=9%  Similarity=0.063  Sum_probs=66.4

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH-H
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK-V  150 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~-v  150 (293)
                      .||.-++-++.|++-. ++..+.+..+.+...+-||-+.+.+.++..   ++-.+.++-+++|.+++++....|..++ +
T Consensus        12 ~mi~v~~~~~vkpg~~-~~f~~~~~~~~~~~~~epGcl~~~~~~~~~---~p~~~~~~E~w~~~~a~~~H~~s~~~~~~~   87 (108)
T 2bbe_A           12 QQIVCVASFLSKEGKT-EALIAALASLIPDTRREAGCIRYELNVSRD---EPRRVTFVEKFVDIAAFDEHCAKDAIQHYF   87 (108)
T ss_dssp             SSEEEEEEEEECTTCH-HHHHHHHHTTHHHHHTSTTEEEEEEEECSS---STTEEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             cEEEEEEEEEECCCcH-HHHHHHHHHHHHHHhcCCCcEEEEEEecCC---CCCEEEEEEEECCHHHHHHHhcChHHHHHH
Confidence            4799999999998754 444444444444444589999999998764   3458899999999999999999999999 8


Q ss_pred             HHHhhccceeee
Q 022676          151 LKEHVMPYCHGL  162 (293)
Q Consensus       151 v~~~i~p~~e~~  162 (293)
                      .+. +.+.+.+.
T Consensus        88 ~~~-~~~~l~~~   98 (108)
T 2bbe_A           88 HQV-MPELVESF   98 (108)
T ss_dssp             HHT-HHHHEEEE
T ss_pred             HHH-HHHhcccc
Confidence            865 46777773

>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}

Probab=96.85  E-value=0.019  Score=45.21  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHH-hhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLY-TSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK  149 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~-~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~  149 (293)
                      ..||.=++-++.|++-. ++..+.+..+. +...+-||-+.+.+.++..   +.-.+.++-+++|.+++++....|..++
T Consensus        18 ~~~i~vi~~~~vkpg~~-~~f~~~l~~~~~~~~r~EpGcl~y~l~~~~~---~p~~f~~~E~W~d~ea~~aH~~s~~~~~   93 (115)
T 3bm7_A           18 QGMIGVVATLKVQPAKA-AEFEKVFLDLAAKVKANEPGCLVYQLTRSKT---EEGVYKVLELYASMDALKHHGGTDYFKA   93 (115)
T ss_dssp             SSCEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHHCTTEEEEEEEECSS---STTEEEEEEEESSHHHHHHHHHCHHHHH
T ss_pred             CccEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhCCHHHHH
Confidence            45788999999998753 44444444444 4444579999999998764   3458999999999999999999999999


Q ss_pred             HHHHhhccceeeeeeeee
Q 022676          150 VLKEHVMPYCHGLMNVDY  167 (293)
Q Consensus       150 vv~~~i~p~~e~~~vvDy  167 (293)
                      +.+. +.+.+.+...+.+
T Consensus        94 ~~~~-~~~ll~~~~~i~~  110 (115)
T 3bm7_A           94 AGAA-MGPTMAGAPVIEY  110 (115)
T ss_dssp             HHHH-HGGGEEEEEEEEE
T ss_pred             HHHH-HHHHhcCCcEEEE
Confidence            9876 5688777555543

>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A

Probab=96.85  E-value=0.015  Score=45.91  Aligned_cols=95  Identities=7%  Similarity=-0.029  Sum_probs=68.4

Q ss_pred             ceeEEEEEEecCCC-CCChHHHHHHHHHHhhhhcCcceeeEEeeccCC---C--CCCCceEEEEEEeCCHHHHHhhcCCh
Q 022676          188 GVEFVLLISFIQSA-FGGPAEDALESLKRLTAEFPSLIVQSTQGSNFN---L--SSEIYTHAVVIRLRSVEAFEMFVGSS  261 (293)
Q Consensus       188 ~i~HIVl~kFk~~~-s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~S---p--~~kGythafv~~F~s~eald~Y~~hp  261 (293)
                      ||.=|+.++.|++. ..++..+++..+.....+-|| .+++.+..+.-   |  ....-+..++-+++|.+++++....|
T Consensus         1 Mi~via~~~vkpg~~~~~~f~~~l~~~~~~~r~EpG-cl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~   79 (114)
T 1tuv_A            1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEG-CHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTP   79 (114)
T ss_dssp             CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTT-EEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSH
T ss_pred             CEEEEEEEEECCCcchHHHHHHHHHHHHHHHccCCC-cEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCH
Confidence            67778888888763 334555555555555556799 99999988721   1  23455888999999999999999998


Q ss_pred             hHHHHHHhhhhccccceeEEeeE
Q 022676          262 DYKEMWSNKFQPIIRTQLPVHFS  284 (293)
Q Consensus       262 ~H~~~~~~~v~p~~e~i~vvDy~  284 (293)
                      ..++ +.+.+.++++..-+--|+
T Consensus        80 h~~~-~~~~~~~l~~~~~i~~~~  101 (114)
T 1tuv_A           80 HMKA-YSEAVKGDVLEMNIRILQ  101 (114)
T ss_dssp             HHHH-HHHHHTTTEEEEEEEEEC
T ss_pred             HHHH-HHHHHHHhccCCEEEEEE
Confidence            5555 777899998875443333

>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}

Probab=96.81  E-value=0.025  Score=44.89  Aligned_cols=88  Identities=8%  Similarity=0.025  Sum_probs=67.3

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      .+..||.=++-++.|++- .++..+.+..+.+...+-||-+.+.+.++..   +.-.+.++-+++|.++++++...|..+
T Consensus        15 ~~~~mi~via~~~vkpg~-~~~~~~~l~~~~~~~r~EpGcl~y~l~~~~~---dp~~f~~~E~W~d~ea~~aH~~s~~~~   90 (119)
T 3e8o_A           15 RRTTMVISHGTLSASAEH-AAHLRQLLVHIAQATRQEDGCLLYLVSEDLS---QPGHFLITEHWDNLGAMHTHLALPGVT   90 (119)
T ss_dssp             ---CCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTTEEEEEEEEETT---STTEEEEEEEESSHHHHHHHHTCHHHH
T ss_pred             CCCceEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHcCHHHH
Confidence            345799999999999875 4445555555555445689999999998764   356899999999999999999999999


Q ss_pred             HHHHHhhccceee
Q 022676          149 KVLKEHVMPYCHG  161 (293)
Q Consensus       149 ~vv~~~i~p~~e~  161 (293)
                      ++.+. +.+.+.+
T Consensus        91 ~~~~~-~~~ll~~  102 (119)
T 3e8o_A           91 QAIDA-LKHLNVT  102 (119)
T ss_dssp             HHHHH-HHHTTCC
T ss_pred             HHHHH-HHHHhcC
Confidence            99876 4577443

>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A

Probab=96.80  E-value=0.024  Score=44.66  Aligned_cols=89  Identities=8%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             cEEEEEEEEecCCC-CHHHHHHHHHHHHhhhhcCCceEEEEEeecCC---C--CCCCccEEEEEEECCHHHHHhhccCcc
Q 022676           73 VVEHICLLKAKKDL-SEEEEKDMLDYLYTSQYQMGGIVAISLGRISN---E--NVENYTHGVFMRFQRKEHLVKFYENPF  146 (293)
Q Consensus        73 mI~HIVlfK~K~~~-s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s---~--~~~gythaL~s~F~s~edL~~Y~~HP~  146 (293)
                      ||.=++-++.|++. ..++..+.+..+.....+=||-+.+.+.++..   |  ..++-++.++-+++|.+++++....|.
T Consensus         1 Mi~via~~~vkpg~~~~~~f~~~l~~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h   80 (114)
T 1tuv_A            1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH   80 (114)
T ss_dssp             CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHH
T ss_pred             CEEEEEEEEECCCcchHHHHHHHHHHHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHH
Confidence            67778899999884 35555666666555555689999999988721   0  134568999999999999999999999


Q ss_pred             hHHHHHHhhccceeee
Q 022676          147 YSKVLKEHVMPYCHGL  162 (293)
Q Consensus       147 H~~vv~~~i~p~~e~~  162 (293)
                      .+++.+. +.+..++.
T Consensus        81 ~~~~~~~-~~~l~~~~   95 (114)
T 1tuv_A           81 MKAYSEA-VKGDVLEM   95 (114)
T ss_dssp             HHHHHHH-HTTTEEEE
T ss_pred             HHHHHHH-HHHhccCC
Confidence            9998876 56777664

>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11

Probab=96.70  E-value=0.023  Score=45.51  Aligned_cols=98  Identities=8%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      .||.-++.++.|++. .++..+++..+.....+-|| .+++.+..+..   ..-++.++-+|+|.+++++....|..++ 
T Consensus        22 ~mi~vi~~~~vkpg~-~~~f~~~l~~~~~~sr~EpG-cl~y~l~~~~~---dp~~f~~~E~W~d~eal~aH~~s~~~~~-   95 (124)
T 2omo_A           22 HMYVTIVYASVKTDK-TEAFKEATRMNHEQSIREPG-NMRFDILQSAD---DPTRFVLYEAYKTRKDAAAHKETAHYLT-   95 (124)
T ss_dssp             SSEEEEEEEEBCGGG-HHHHHHHHHHHHHHHTTSTT-EEEEEEEEESS---CTTEEEEEEEESSHHHHHHHTTSHHHHH-
T ss_pred             ceEEEEEEEEECcCc-HHHHHHHHHHHHHHHhcCCC-cEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhCCHHHHH-
Confidence            377788888888753 34445555555444456799 99999887653   2347889999999999999999996665 


Q ss_pred             HHhhhhcccccee-EEeeE-eCCCCC
Q 022676          267 WSNKFQPIIRTQL-PVHFS-VDPVGT  290 (293)
Q Consensus       267 ~~~~v~p~~e~i~-vvDy~-v~~~g~  290 (293)
                      +.+.+.++++.-. +--|. +.|.|.
T Consensus        96 ~~~~~~~ll~~~~~v~~~~~l~p~g~  121 (124)
T 2omo_A           96 WRDTVADWMAEPRKGVIYGGLYPTGD  121 (124)
T ss_dssp             HHHHHGGGBSSCCEEEEEEEEESCC-
T ss_pred             HHHHHHHHhcCCcEEEEEEeecCCCC
Confidence            6778999987632 22222 445664

>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}

Probab=96.69  E-value=0.018  Score=45.92  Aligned_cols=85  Identities=6%  Similarity=0.068  Sum_probs=66.6

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.=++-++.|++- .++..+.+..+.+...+=||-+.+.+.++..   ++-.+.++-+++|.++++++...|..+++.
T Consensus        24 ~MI~via~~~vkpg~-~~~f~~~l~~~~~~~r~EpGcl~y~l~~~~~---dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~   99 (119)
T 4dpo_A           24 LAIRVVAKNQVKPEK-VQEFMNLCKSLIEETLKEEGCIDYGVYQELE---NPEILTMLEEWKDEGSLDQHIRSDHFKEIF   99 (119)
T ss_dssp             HCEEEEEEEEBCTTT-HHHHHHHHHHHHHHHHTSTTEEEEEEEEETT---EEEEEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             ceEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            489999999999884 4444444444444445689999999998764   356799999999999999999999999998


Q ss_pred             HHhhccceee
Q 022676          152 KEHVMPYCHG  161 (293)
Q Consensus       152 ~~~i~p~~e~  161 (293)
                      +. +.+.+++
T Consensus       100 ~~-~~~ll~~  108 (119)
T 4dpo_A          100 PL-LSECLDK  108 (119)
T ss_dssp             HH-HHHTBSS
T ss_pred             HH-HHHHhcC
Confidence            76 4577664

>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11

Probab=96.66  E-value=0.026  Score=42.93  Aligned_cols=83  Identities=14%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.-++-++.|++-. ++..+.+..+.+...+=||-+.+.+.++ .    +-++.++-+|+|.++++++...|..+++.
T Consensus         4 ~~i~v~~~~~vkpg~~-~~~~~~l~~~~~~~~~epG~l~~~~~~~-~----p~~~~~~E~w~~~~a~~~H~~s~~~~~~~   77 (104)
T 2pd1_A            4 TKLALFVRLEAKPGQE-AALADFLASALPLANAESGTTAWFALKF-G----PSTFGVFDAFADEAGRQAHLNGQIAAALM   77 (104)
T ss_dssp             CCEEEEEEEEBCTTCH-HHHHHHHHHTHHHHHTCTTEEEEEEEEC-S----SSEEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             eEEEEEEEEEeCCCCH-HHHHHHHHHHHHHHhCCCCcEEEEEEec-C----CCEEEEEEEECCHHHHHHHhCCHHHHHHH
Confidence            3788899999998764 4444444444444455899999999887 3    35899999999999999999999999988


Q ss_pred             HHhhccceee
Q 022676          152 KEHVMPYCHG  161 (293)
Q Consensus       152 ~~~i~p~~e~  161 (293)
                      +. +.+.+++
T Consensus        78 ~~-~~~ll~~   86 (104)
T 2pd1_A           78 AN-AATLLSS   86 (104)
T ss_dssp             HH-HHHHBSS
T ss_pred             HH-HHHHhcC
Confidence            75 4577665

>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A

Probab=96.65  E-value=0.019  Score=44.16  Aligned_cols=84  Identities=5%  Similarity=-0.050  Sum_probs=62.7

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.-|+.++.|++. .++..+++..+.+...+-|| .+++.+..+..   .+-+..++.+|+|.++++++...|..++ +
T Consensus         1 Mi~vi~~~~vkpg~-~~~~~~~~~~~~~~~r~epG-~l~~~~~~~~~---~p~~~~~~E~w~d~~a~~~h~~s~~~~~-~   74 (106)
T 2gff_A            1 MHVTLVEINVKEDK-VDQFIEVFRANHLGSIREAG-NLRFDVLRDEH---IPTRFYIYEAYTDEAAVAIHKTTPHYLQ-C   74 (106)
T ss_dssp             CEEEEEEEEBCGGG-HHHHHHHHHHHHHHHHTSTT-EEEEEEEEESS---CTTEEEEEEEESSHHHHHHHTTSHHHHH-H
T ss_pred             CEEEEEEEEECcCC-HHHHHHHHHHHHHHHhCCCC-cEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhcCHHHHH-H
Confidence            66677888887753 24444555555444456799 99999988753   2347889999999999999999996665 6


Q ss_pred             Hhhhhccccc
Q 022676          268 SNKFQPIIRT  277 (293)
Q Consensus       268 ~~~v~p~~e~  277 (293)
                      .+.+.++++.
T Consensus        75 ~~~~~~~l~~   84 (106)
T 2gff_A           75 VEQLAPLMTG   84 (106)
T ss_dssp             HHHHGGGBSS
T ss_pred             HHHHHHHhcC
Confidence            6788999875

>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6

Probab=96.63  E-value=0.023  Score=43.87  Aligned_cols=88  Identities=6%  Similarity=-0.156  Sum_probs=66.9

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.-++.++.|++...++..+++..+.....+-|| .+++.+..+...   .-+..++-+|+|.+++++....|..+ .+
T Consensus        13 mi~vi~~~~vkpg~d~~~f~~~l~~~~~~~r~epG-cl~~~~~~~~~~---p~~~~~~E~w~d~~a~~~H~~s~~~~-~~   87 (105)
T 1q8b_A           13 MHYITACLKIISDKDLNEIMKEFKKLEEETNKEEG-CITFHAYPLEPS---ERKIMLWEIWENEEAVKIHFTKKHTI-DV   87 (105)
T ss_dssp             EEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTT-EEEEEEEECCGG---GCEEEEEEEESSHHHHHHHTTSHHHH-HH
T ss_pred             EEEEEEEEEECCCCcHHHHHHHHHHHHHHHhcCCC-cEEEEEEEcCCC---CCEEEEEEEECCHHHHHHHhcCHHHH-HH
Confidence            67778888888875345666666666655567899 999998877532   23688999999999999999999554 57


Q ss_pred             HhhhhccccceeE
Q 022676          268 SNKFQPIIRTQLP  280 (293)
Q Consensus       268 ~~~v~p~~e~i~v  280 (293)
                      .+.+.+++++.--
T Consensus        88 ~~~~~~~l~~~e~  100 (105)
T 1q8b_A           88 QKQELTEVEWLMK  100 (105)
T ss_dssp             HTTTCEEEEEEEE
T ss_pred             HHHHHHHhhChhh
Confidence            7888888876543

>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11

Probab=96.62  E-value=0.043  Score=41.16  Aligned_cols=90  Identities=10%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.-++.++.|++. .++..+++..+.....+-|| .+++.+..+..   ..-+..++.+|+|.+++++....|..++ +
T Consensus         6 mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG-~l~~~~~~~~~---~p~~~~~~e~w~~~~a~~~h~~s~~~~~-~   79 (99)
T 1x7v_A            6 PLTLIATITAAPGH-AEALERELRALVAPSRAEAG-CLQYDLHQDRH---DSHLFYMIEQWRDDAALERHQNTEHFLR-F   79 (99)
T ss_dssp             CEEEEEEEEECTTC-HHHHHHHHHHHHHHHHHSTT-EEEEEEEECSS---CTTEEEEEEEESSHHHHHHHHTSHHHHH-H
T ss_pred             cEEEEEEEEECCCC-HHHHHHHHHHHHHHHhCCCC-ceEEEEEecCC---CCCEEEEEEEECCHHHHHHHhcCHHHHH-H
Confidence            67788888888765 34455555555555567899 99999887753   2346789999999999999999996655 7


Q ss_pred             HhhhhccccceeEEee
Q 022676          268 SNKFQPIIRTQLPVHF  283 (293)
Q Consensus       268 ~~~v~p~~e~i~vvDy  283 (293)
                      .+.+.++++...+.-|
T Consensus        80 ~~~~~~~~~~~~v~~~   95 (99)
T 1x7v_A           80 SRGNEALLQNVKIDQL   95 (99)
T ss_dssp             HTTCGGGEEEEEEEEE
T ss_pred             HHHHHHhcCCceEEEE
Confidence            7788888555444433

>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11

Probab=96.60  E-value=0.028  Score=42.75  Aligned_cols=82  Identities=7%  Similarity=-0.063  Sum_probs=61.3

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.-++.++.|++.. ++..+++..+.....+-|| .+++.+-.+ .    +-+..++-+|+|.++++++...|..++ +
T Consensus         5 ~i~v~~~~~vkpg~~-~~~~~~l~~~~~~~~~epG-~l~~~~~~~-~----p~~~~~~E~w~~~~a~~~H~~s~~~~~-~   76 (104)
T 2pd1_A            5 KLALFVRLEAKPGQE-AALADFLASALPLANAESG-TTAWFALKF-G----PSTFGVFDAFADEAGRQAHLNGQIAAA-L   76 (104)
T ss_dssp             CEEEEEEEEBCTTCH-HHHHHHHHHTHHHHHTCTT-EEEEEEEEC-S----SSEEEEEEEESSHHHHHHHHTSHHHHH-H
T ss_pred             EEEEEEEEEeCCCCH-HHHHHHHHHHHHHHhCCCC-cEEEEEEec-C----CCEEEEEEEECCHHHHHHHhCCHHHHH-H
Confidence            567777788877553 4444555554444456799 999999887 3    337889999999999999999996655 7


Q ss_pred             Hhhhhccccc
Q 022676          268 SNKFQPIIRT  277 (293)
Q Consensus       268 ~~~v~p~~e~  277 (293)
                      .+.+.+++++
T Consensus        77 ~~~~~~ll~~   86 (104)
T 2pd1_A           77 MANAATLLSS   86 (104)
T ss_dssp             HHHHHHHBSS
T ss_pred             HHHHHHHhcC
Confidence            7788888876

>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}

Probab=96.45  E-value=0.043  Score=43.58  Aligned_cols=90  Identities=12%  Similarity=0.084  Sum_probs=67.8

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHH-hhcCChhHH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFE-MFVGSSDYK  264 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald-~Y~~hp~H~  264 (293)
                      ..||.=|+.++.|++.. ++.++++..+.....+-|| .+++.+..+...   .=++.++.+++|.++++ .|...|..+
T Consensus        18 ~~~i~via~~~vkpg~~-~~f~~~~~~~~~~~r~epG-cl~y~l~r~~~~---p~~f~~~E~W~s~eal~~hf~~S~hf~   92 (115)
T 3gz7_A           18 QGMIQEIASILVQPGRE-ADFEAGVAQARPLFMRARG-CHGVALHRSIEA---PQRYTLVVDWETVDNHMVDFRQSADFQ   92 (115)
T ss_dssp             CSCEEEEEEEEBCTTCH-HHHHHHHHHHHHHHHTSTT-EEEEEEEEESSS---TTEEEEEEEESSHHHHHTTTTTSHHHH
T ss_pred             ceEEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCC-eEEEEEEecCCC---CCEEEEEEEECCHHHHHHHHhcCHHHH
Confidence            45888888899998654 4455555555555666799 999999987642   23578999999999999 679999666


Q ss_pred             HHHHhhhhccccceeEE
Q 022676          265 EMWSNKFQPIIRTQLPV  281 (293)
Q Consensus       265 ~~~~~~v~p~~e~i~vv  281 (293)
                      + +.+.+.|+++.--.+
T Consensus        93 ~-~~~~~~~ll~~~p~i  108 (115)
T 3gz7_A           93 E-WRKLVGECFAEPPQV  108 (115)
T ss_dssp             H-HHHHHGGGBSSCCEE
T ss_pred             H-HHHHHHHHhcCCCEE
Confidence            5 778999998865333

>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11

Probab=96.44  E-value=0.027  Score=42.51  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=61.7

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      .||.-++.++.|++. .++..+++..+.....+-|| .+++.+..+ ..   .-+..++.+|+|.+++++....|..++ 
T Consensus         4 ~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG-~l~~~~~~~-~~---~~~~~~~e~w~~~~a~~~h~~s~~~~~-   76 (102)
T 1y0h_A            4 SPVAVIARFMPRPDA-RSALRALLDAMITPTRAEDG-CRSYDLYES-AD---GGELVLFERYRSRIALDEHRGSPHYLN-   76 (102)
T ss_dssp             SCEEEEEEECBCGGG-HHHHHHHHHHHHHHHHHSTT-EEEEEEEEE-TT---SSCEEEEEEESSHHHHHHHHTSHHHHH-
T ss_pred             ceEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCC-cEEEEEEEe-CC---CCEEEEEEEECCHHHHHHHhcChHHHH-
Confidence            367777777777653 24444454544444456799 999999987 42   235779999999999999999996655 


Q ss_pred             HHhhhhccccc
Q 022676          267 WSNKFQPIIRT  277 (293)
Q Consensus       267 ~~~~v~p~~e~  277 (293)
                      +.+.+.+++++
T Consensus        77 ~~~~~~~~l~~   87 (102)
T 1y0h_A           77 YRAQVGELLTR   87 (102)
T ss_dssp             HHTTSGGGBSS
T ss_pred             HHHHHHHHhcC
Confidence            77789999876

>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}

Probab=96.43  E-value=0.023  Score=50.11  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=80.7

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      ....||..|+-++.|++-.++-.+.+.+.+.+...+=||-+.+.+.++..   +.-.+.++-+++|.+++++....|..+
T Consensus       112 ~~~~mI~~ia~~~vkpg~~~~f~~~l~~~~~~~~r~EpGcl~y~~~~d~~---~p~~f~~~E~w~d~~Al~aH~~s~hf~  188 (220)
T 3f44_A          112 YADNFVMRLIKVEVKDADAEKFSHAVKKEMTTSMASEPGMEIMMSGTNID---NPNEWYFIEVYANDEAYDIHVKTPHYK  188 (220)
T ss_dssp             --CCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT---EEEEEEEEEEESSHHHHHHHTTSHHHH
T ss_pred             CCCceEEEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhcCHHHH
Confidence            35689999999999987544444444345555445579999999998764   357899999999999999999999999


Q ss_pred             HHHHHhhccceeeeeeeeeecccCCCccccccCC
Q 022676          149 KVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKG  182 (293)
Q Consensus       149 ~vv~~~i~p~~e~~~vvDye~~v~~~~~~~~~~g  182 (293)
                      ++.+. +.+.+++..+..+++      .++..+|
T Consensus       189 ~~~~~-~~~ll~~~~v~~l~p------~~l~~~g  215 (220)
T 3f44_A          189 EYIEE-TDGMVKSRDVKTLVR------DTLATQG  215 (220)
T ss_dssp             HHHHH-TTTTEEEEEEEEEEE------EEEEESS
T ss_pred             HHHHH-HHHHhcCCceEEeec------hhhhhcc
Confidence            99875 679999998888876      4455566

>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5

Probab=96.38  E-value=0.023  Score=43.18  Aligned_cols=91  Identities=18%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.=|+.++.+++. .++..+.+..+.....+.|| .+++.+..+...   .-++.++.+|+|.++++++..+|.+++ +
T Consensus         1 Mi~vi~~~~v~~g~-~~~f~~~~~~~~~~~~~~pG-~l~~~l~~~~~~---~~~~~~~~~W~s~~a~~a~~~s~~~~~-~   74 (106)
T 1iuj_A            1 MFVTMNRIPVRPEY-AEQFEEAFRQRARLVDRMPG-FIRNLVLRPKNP---GDPYVVMTLWESEEAFRAWTESPAFKE-G   74 (106)
T ss_dssp             CEEEEEEECBCGGG-HHHHHHHHHHHGGGGTTSTT-EEEEEEEEESST---TSCEEEEEEESCHHHHHHHHTSHHHHH-H
T ss_pred             CEEEEEEEEeCcch-HHHHHHHHHHHHHHhccCCC-ceEEEEEecCCC---CCeEEEEEEECCHHHHHHHhcCHHHHH-H
Confidence            55556666666643 24444555555455556799 999999887642   236789999999999999999998776 5


Q ss_pred             Hhhhh----ccccc-eeEEeeE
Q 022676          268 SNKFQ----PIIRT-QLPVHFS  284 (293)
Q Consensus       268 ~~~v~----p~~e~-i~vvDy~  284 (293)
                      .+.+.    +++.. .-+.-|+
T Consensus        75 ~~~~~~~~~~~~~~~~~v~~~~   96 (106)
T 1iuj_A           75 HARSGTLPKEAFLGPNRLEAFE   96 (106)
T ss_dssp             TTTTSSSSCSCBSSCCEEEEEE
T ss_pred             HhccccCCcccccCCCceEEEE
Confidence            56776    66543 3343444

>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A

Probab=96.38  E-value=0.026  Score=45.82  Aligned_cols=82  Identities=12%  Similarity=0.116  Sum_probs=67.3

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.=|..|+.+++  .++.++.+..+.++..+.|| .++++.-.+..   ..-.+.++.+++|.++++++..+|.+++ +
T Consensus        23 mi~via~~~V~pg--~~~f~~~~~~~~~~~~~~pG-fi~~~L~r~~~---~p~~yv~~~~W~s~ea~~a~~~S~~f~a-~   95 (128)
T 3kg0_A           23 EVTFVNRFTVHGA--PAEFESVFARTAAFFARQPG-FVRHTLLRERD---KDNSYVNIAVWTDHDAFRRALAQPGFLP-H   95 (128)
T ss_dssp             CEEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTT-EEEEEEEECTT---CSSEEEEEEEESSHHHHHHHHHCGGGHH-H
T ss_pred             cEEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCC-ccEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHcCHHHHH-H
Confidence            7788899999998  77788888888888788999 99988877653   2346789999999999999999998886 5


Q ss_pred             Hhhhhcccc
Q 022676          268 SNKFQPIIR  276 (293)
Q Consensus       268 ~~~v~p~~e  276 (293)
                      .+.+.+++.
T Consensus        96 ~~~l~~~~~  104 (128)
T 3kg0_A           96 ATALRALST  104 (128)
T ss_dssp             HHHHHHHEE
T ss_pred             HHhhhhhcc
Confidence            567777654

>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}

Probab=96.36  E-value=0.029  Score=42.71  Aligned_cols=71  Identities=15%  Similarity=0.066  Sum_probs=55.3

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccC
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYEN  144 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~H  144 (293)
                      .||.-|..|+.|++. .++..+.+..+.....+-||-+..++.+.... .+.|.++++.+++|.|++++-..|
T Consensus         4 ~mi~~i~~~~v~pg~-~~~f~~~~~~~~~~~~~~pG~i~~~l~~~~~~-~~~~~~~~~~~W~s~ea~~a~~~~   74 (99)
T 2ril_A            4 APVTLINPFKVPADK-LEAAIEYWEAHRDFMAQQPGYLSTQLHQSIDE-GATYQLINVAIWQSEADFYQAAQK   74 (99)
T ss_dssp             CCEEEEEEEBCCTTC-HHHHHHHHHHHHHHHTTSTTEEEEEEEECSST-TSSCSEEEEEEESCHHHHHHHHHH
T ss_pred             ceEEEEEEEEECCcc-HHHHHHHHHHHHHHHhcCCCeeeEEEeecCCC-CCeEEEEEEEEECCHHHHHHHHHh
Confidence            489999999999885 44555555555555556999999999987653 455778999999999999995555

>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15

Probab=96.35  E-value=0.015  Score=45.74  Aligned_cols=80  Identities=14%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             CcEEEEEEEEecCCCCHHHHH-HHHHHHHhhhhcCCceEEEEEeecCC--CCCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           72 KVVEHICLLKAKKDLSEEEEK-DMLDYLYTSQYQMGGIVAISLGRISN--ENVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~-~~~~~L~~L~~~IPgv~~i~~G~~~s--~~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      .||+.+||++-+++  .++.. -..+.-..|..++||++.+.+.....  ....+|+.+..+.|+|.|++++....|+-+
T Consensus         7 ~Mik~~vly~~~~~--~e~F~~yy~~~H~PL~~~~pgl~~y~~~~~~~~~~~~~~yd~iael~fds~ea~~aa~~s~e~~   84 (108)
T 2ftr_A            7 MMVKLIALYEQPED--KQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEGK   84 (108)
T ss_dssp             EEEEEEEEEECCSC--HHHHHHHHHHTHHHHHTTSTTCCEEEEEEEEEBTTBCCSEEEEEEEEESSHHHHHHHHHSHHHH
T ss_pred             ceEEEEEEEeCCCC--HHHHHHHHHHhhHHHHhhCCCceEEEEEeccCCCCCCCCeeEEEEEEECCHHHHHHHHcCHhHH
Confidence            48999999997775  44433 33344445777899999987664321  123479999999999999999999888777


Q ss_pred             HHHHH
Q 022676          149 KVLKE  153 (293)
Q Consensus       149 ~vv~~  153 (293)
                      ++.+.
T Consensus        85 ~~~~D   89 (108)
T 2ftr_A           85 ASGKD   89 (108)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}

Probab=96.34  E-value=0.046  Score=43.49  Aligned_cols=80  Identities=9%  Similarity=0.098  Sum_probs=68.7

Q ss_pred             EEEEEEecCCCCHHHHHHHHHHH-HhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHHh
Q 022676           76 HICLLKAKKDLSEEEEKDMLDYL-YTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEH  154 (293)
Q Consensus        76 HIVlfK~K~~~s~e~~~~~~~~L-~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~  154 (293)
                      =|++++||++.+++..+.+.... ..+..++|+|+++.+-+......-.|.++=++.++|.|+...=...|.-+++++++
T Consensus         4 iv~~i~L~~g~d~~aFe~w~~evD~P~~~~LpsVrsF~V~R~~~~g~~py~yiEvi~v~s~eaf~~~m~S~~~~~~~~dF   83 (105)
T 2jdj_A            4 IIHKIRLFDVAQADAFEFWVQNVDYATCPDLPSVVRFDVHRASLQANAPYHYVEVIKITDRAAFDADMETSTFAGLVQAF   83 (105)
T ss_dssp             EEEEEEESCGGGHHHHHHHHHHTHHHHGGGCTTEEEEEEEECCCCTTCSCSEEEEEEESCHHHHHHHHTSHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHhchhhhccCCCcceeEEEEecccCCCCCeeEEEEEecCCHHHHHHHhcCHHHHHHHHHH
Confidence            47899999999999988886655 34777899999999998776534579999999999999999999999999999886


Q ss_pred             h
Q 022676          155 V  155 (293)
Q Consensus       155 i  155 (293)
                      .
T Consensus        84 ~   84 (105)
T 2jdj_A           84 S   84 (105)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A

Probab=96.24  E-value=0.011  Score=45.82  Aligned_cols=77  Identities=6%  Similarity=0.063  Sum_probs=59.7

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ||.=|.-++.|++-.++ ..+.+..+ ....+.||-+.+++-++... .++-.+.++++++|+|+++++...|.|++..+
T Consensus         4 Mi~vi~~~~v~pg~~~~-f~~~~~~~-~~~~~~pG~i~~~l~r~~~~-~~~~~~~~~~~W~s~ea~~a~~~s~~f~~~~~   80 (109)
T 2zdo_A            4 KFMAEARLTLTKGTAKD-IIERFYTR-HGIETLEGFDGMFVTQTLEQ-EDFDEVKILTVWKSKQAFTDWLKSDVFKAAHK   80 (109)
T ss_dssp             CEEEEEEEEEETTCHHH-HHHHTTSC-CSGGGCTTEEEEEEEEETTC-SSEEEEEEEEEESCHHHHHHHHTSHHHHHHHT
T ss_pred             EEEEEEEEEeCCCCHHH-HHHHHhcc-cccccCCCeEEEEEEecCCC-CCceEEEEEEEECCHHHHHHHHcCHHHHHHHH
Confidence            78888899998876444 44443444 55556999999999987753 22247999999999999999999999999765

>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}

Probab=96.22  E-value=0.056  Score=42.47  Aligned_cols=89  Identities=12%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHH-HhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLK-RLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~-~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      ||.-++.++.|++.. ++..+++..+. +...+-|| .+++.+..+...   .-+..++.+|+|.+++++....|..++ 
T Consensus        20 ~i~vi~~~~vkpg~~-~~f~~~l~~~~~~~~r~EpG-cl~y~l~~~~~~---p~~f~~~E~W~d~ea~~aH~~s~~~~~-   93 (115)
T 3bm7_A           20 MIGVVATLKVQPAKA-AEFEKVFLDLAAKVKANEPG-CLVYQLTRSKTE---EGVYKVLELYASMDALKHHGGTDYFKA-   93 (115)
T ss_dssp             CEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHHCTT-EEEEEEEECSSS---TTEEEEEEEESSHHHHHHHHHCHHHHH-
T ss_pred             cEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCCC-cEEEEEEEcCCC---CCEEEEEEEECCHHHHHHHhCCHHHHH-
Confidence            777788888887542 33444444444 44455799 999999887532   237889999999999999999996665 


Q ss_pred             HHhhhhccccceeEEe
Q 022676          267 WSNKFQPIIRTQLPVH  282 (293)
Q Consensus       267 ~~~~v~p~~e~i~vvD  282 (293)
                      +.+.+.+++++-..+.
T Consensus        94 ~~~~~~~ll~~~~~i~  109 (115)
T 3bm7_A           94 AGAAMGPTMAGAPVIE  109 (115)
T ss_dssp             HHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHhcCCcEEE
Confidence            6678899988754444

>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*

Probab=96.16  E-value=0.034  Score=44.69  Aligned_cols=83  Identities=12%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             CCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCC-C--------CCCCccEEEEEEECCHHHHHh
Q 022676           70 KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISN-E--------NVENYTHGVFMRFQRKEHLVK  140 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s-~--------~~~gythaL~s~F~s~edL~~  140 (293)
                      ..+||+-+.+.+=|++.|.|+..+--..=..|...+||++......... +        ....||-+--+-|+|.+|+++
T Consensus         7 ~~rMiKli~ll~Rk~gmS~EeF~~~w~~Hapla~~lpGl~~Y~q~~v~~~~~~~~~~~~~~~~~DgiaElwF~d~ea~~a   86 (116)
T 3hf5_A            7 EGRMIRILYLLVKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFASEEQYQV   86 (116)
T ss_dssp             HHTSEEEEEEEECCTTSCHHHHHHHHHHHHHHTTTCTTCSEEEEEEEEECCCCCSSCBCCCCCCCEEEEEEESSHHHHHH
T ss_pred             cCceEEEEEEEecCCCcCHHHHHHHHHHHHHHHHhCcCCccEEEEEEecCCCCCCCCcCCCCCcCEEEEEEECCHHHHHH
Confidence            3579999999999999999996554444445666789988776443211 1        012799999999999999999


Q ss_pred             hccCcchHHHHH
Q 022676          141 FYENPFYSKVLK  152 (293)
Q Consensus       141 Y~~HP~H~~vv~  152 (293)
                      ....|+.++..+
T Consensus        87 a~~sp~~~a~~~   98 (116)
T 3hf5_A           87 YMESDIRKAWFE   98 (116)
T ss_dssp             HHHCHHHHHHHH
T ss_pred             HhCCHHHHHHHh
Confidence            999999988654

>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}

Probab=96.14  E-value=0.057  Score=41.56  Aligned_cols=86  Identities=12%  Similarity=0.069  Sum_probs=63.4

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.-++.++.|++.. ++..+++..+.....+-|| .+++.+..+..   .+-+..++.+|+|.+++++....|..++.+
T Consensus        13 mi~v~~~~~vkpg~~-~~f~~~~~~~~~~~~~epG-cl~~~~~~~~~---~p~~~~~~E~w~~~~a~~~H~~s~~~~~~~   87 (108)
T 2bbe_A           13 QIVCVASFLSKEGKT-EALIAALASLIPDTRREAG-CIRYELNVSRD---EPRRVTFVEKFVDIAAFDEHCAKDAIQHYF   87 (108)
T ss_dssp             SEEEEEEEEECTTCH-HHHHHHHHTTHHHHHTSTT-EEEEEEEECSS---STTEEEEEEEESSHHHHHHHHTSHHHHHHH
T ss_pred             EEEEEEEEEECCCcH-HHHHHHHHHHHHHHhcCCC-cEEEEEEecCC---CCCEEEEEEEECCHHHHHHHhcChHHHHHH
Confidence            788888888887643 4444444444444456799 99999887753   234688999999999999999999554427


Q ss_pred             Hhhhhccccce
Q 022676          268 SNKFQPIIRTQ  278 (293)
Q Consensus       268 ~~~v~p~~e~i  278 (293)
                      .+.+.+++++.
T Consensus        88 ~~~~~~~l~~~   98 (108)
T 2bbe_A           88 HQVMPELVESF   98 (108)
T ss_dssp             HHTHHHHEEEE
T ss_pred             HHHHHHhcccc
Confidence            77889998873

>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*

Probab=96.01  E-value=0.015  Score=44.96  Aligned_cols=78  Identities=9%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.=|.-|++|++-.+ +..+.+..+ ....+.||-+.+++.++... .+.-.+.++.+++|.++++++...|.|++..
T Consensus         1 ~Mi~vi~~~~v~pg~~~-~f~~~~~~~-~~~~~~pG~l~~~l~r~~~~-~~~~~~~~~~~W~s~ea~~a~~~s~~f~~~~   77 (109)
T 1sqe_A            1 HMFMAENRLQLQKGSAE-ETIERFYNR-QGIETIEGFQQMFVTKTLNT-EDTDEVKILTIWESEDSFNNWLNSDVFKEAH   77 (109)
T ss_dssp             CCEEEEEEEEECTTCHH-HHGGGGGCC-TTGGGSTTEEEEEEEEETTC-SSSEEEEEEEEESCHHHHHHHHTSHHHHHCC
T ss_pred             CEEEEEEEEEECCCcHH-HHHHHHhcc-cccccCCCeEEEEEEEcCCC-CCCcEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            37888888999887543 344443444 55566899999999987753 2225789999999999999999999988754


Q ss_pred             H
Q 022676          152 K  152 (293)
Q Consensus       152 ~  152 (293)
                      +
T Consensus        78 ~   78 (109)
T 1sqe_A           78 K   78 (109)
T ss_dssp             -
T ss_pred             h
Confidence            4

>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}

Probab=95.98  E-value=0.055  Score=42.99  Aligned_cols=85  Identities=8%  Similarity=0.015  Sum_probs=64.0

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.-++.++.|++. .++..+++..+.+...+-|| .+++.+..+..   +.-+..++-+++|.++++++...|..++ +
T Consensus        25 MI~via~~~vkpg~-~~~f~~~l~~~~~~~r~EpG-cl~y~l~~~~~---dp~~f~~~E~W~d~ea~~aH~~s~~f~~-~   98 (119)
T 4dpo_A           25 AIRVVAKNQVKPEK-VQEFMNLCKSLIEETLKEEG-CIDYGVYQELE---NPEILTMLEEWKDEGSLDQHIRSDHFKE-I   98 (119)
T ss_dssp             CEEEEEEEEBCTTT-HHHHHHHHHHHHHHHHTSTT-EEEEEEEEETT---EEEEEEEEEEESSHHHHHHHHTSHHHHH-H
T ss_pred             eEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCC-cEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHcCHHHHH-H
Confidence            77788888888763 34444555555544456799 99999988753   3346889999999999999999996665 7


Q ss_pred             Hhhhhccccce
Q 022676          268 SNKFQPIIRTQ  278 (293)
Q Consensus       268 ~~~v~p~~e~i  278 (293)
                      .+.+.++++.-
T Consensus        99 ~~~~~~ll~~~  109 (119)
T 4dpo_A           99 FPLLSECLDKE  109 (119)
T ss_dssp             HHHHHHTBSSC
T ss_pred             HHHHHHHhcCC
Confidence            77889998843

>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}

Probab=95.94  E-value=0.061  Score=43.04  Aligned_cols=93  Identities=9%  Similarity=-0.058  Sum_probs=69.6

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      +.||.=|.-++.|++-- ++..++++.+.+.-.+=||-+.+.+.++..   +.-.+.++-+++|+++++++...|..+++
T Consensus        21 ~sMi~viA~~~vkP~~~-d~~~~~~~~l~~~tr~EpGcl~y~l~~d~~---dp~~f~~~E~w~d~~al~~H~~s~h~~~~   96 (118)
T 4hl9_A           21 QSMLKVIAQDFIKPEAI-DIVLPLYRELVEKTRQEPLCLAYDLFVDQK---DPGHFVFIEEWPDRAALDIHCATEHFTRL   96 (118)
T ss_dssp             --CEEEEEEEEECGGGH-HHHHHHHHHHHHHHHTSTTCCEEEEEEETT---EEEEEEEEEEESSHHHHHHHHHSHHHHHH
T ss_pred             heeeEEEEEEEECchhH-HHHHHHHHHHHHHHhcCCCcEEEEEEEcCC---CCCEEEEEEEeCCHHHHHHHHCCHHHHHH
Confidence            46899899999998753 344444444444444579999999998764   35678999999999999999999999999


Q ss_pred             HHHhhccceeeeeeeeee
Q 022676          151 LKEHVMPYCHGLMNVDYE  168 (293)
Q Consensus       151 v~~~i~p~~e~~~vvDye  168 (293)
                      ++. +.++..+-..|.+-
T Consensus        97 ~~~-l~~~l~~~~~i~~l  113 (118)
T 4hl9_A           97 VPL-INAHQRQDGTVVLM  113 (118)
T ss_dssp             HHH-HHTTEEEEEEEEEE
T ss_pred             HHH-HHHHhcCCCEEEEE
Confidence            876 56887766555543

>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5

Probab=95.73  E-value=0.023  Score=46.30  Aligned_cols=75  Identities=4%  Similarity=0.027  Sum_probs=50.9

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      ..|+  .|+|..++....+.-.++.+.+.++..++||-++++.-++.    +| -..-++.++|.|++++...||+|++.
T Consensus        11 ~pm~--aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~Es~~~~----dg-~~is~SyW~deeai~aW~~~~eHr~A   83 (122)
T 2go8_A           11 PPYY--AVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREA----DG-RGITVSYWDSMDAINHWRHHTEHQAA   83 (122)
T ss_dssp             SCEE--EEEEEEECC------CHHHHHHHHHHHHSTTEEEEEEEECT----TS-EEEEEEEESCHHHHHHHHHHC-----
T ss_pred             CCEE--EEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEEEEEcC----CC-CEEEEEEeCCHHHHHHHHhCHHHHHH
Confidence            4454  56888888766667788889999999999999999955433    24 67778999999999999999999985


Q ss_pred             HH
Q 022676          151 LK  152 (293)
Q Consensus       151 v~  152 (293)
                      .+
T Consensus        84 q~   85 (122)
T 2go8_A           84 KE   85 (122)
T ss_dssp             --
T ss_pred             HH
Confidence            43

>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}

Probab=95.69  E-value=0.057  Score=43.24  Aligned_cols=92  Identities=8%  Similarity=-0.046  Sum_probs=64.2

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKE  265 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~  265 (293)
                      ..||.=|..++.|++.- ++..++++.+.+...+=|| .+++.+-.+...   .=+..++-.++|.+|++++...|..++
T Consensus        21 ~sMi~viA~~~vkP~~~-d~~~~~~~~l~~~tr~EpG-cl~y~l~~d~~d---p~~f~~~E~w~d~~al~~H~~s~h~~~   95 (118)
T 4hl9_A           21 QSMLKVIAQDFIKPEAI-DIVLPLYRELVEKTRQEPL-CLAYDLFVDQKD---PGHFVFIEEWPDRAALDIHCATEHFTR   95 (118)
T ss_dssp             --CEEEEEEEEECGGGH-HHHHHHHHHHHHHHHTSTT-CCEEEEEEETTE---EEEEEEEEEESSHHHHHHHHHSHHHHH
T ss_pred             heeeEEEEEEEECchhH-HHHHHHHHHHHHHHhcCCC-cEEEEEEEcCCC---CCEEEEEEEeCCHHHHHHHHCCHHHHH
Confidence            45888888899988542 3333444444444445599 999998887542   245779999999999999999995555


Q ss_pred             HHHhhhhccccceeEEee
Q 022676          266 MWSNKFQPIIRTQLPVHF  283 (293)
Q Consensus       266 ~~~~~v~p~~e~i~vvDy  283 (293)
                       +.+.+.++++.-..+.+
T Consensus        96 -~~~~l~~~l~~~~~i~~  112 (118)
T 4hl9_A           96 -LVPLINAHQRQDGTVVL  112 (118)
T ss_dssp             -HHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHHHhcCCCEEEE
Confidence             77799998875544433

>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}

Probab=95.55  E-value=0.13  Score=41.15  Aligned_cols=88  Identities=9%  Similarity=0.007  Sum_probs=67.7

Q ss_pred             CCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH
Q 022676           70 KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK  149 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~  149 (293)
                      ...||.=|+-++.|++-.++-.+.++    +...+-||-+.+.+.++..   +.-.+.++-+++|.++++++...|..++
T Consensus        20 ~~~Mi~via~~~vkpg~~~ef~~~l~----~~~r~EpGcl~y~l~~~~~---dp~~f~~~E~W~d~ea~~aH~~s~~f~~   92 (122)
T 4dn9_A           20 FQSMYGLIGKMRATPGQRDALIAILV----EGASSMPGCLSYVVAQDPK---DPDAIWITEVWDSPESHKASLSLPSVQD   92 (122)
T ss_dssp             --CCEEEEEEEEESTTCHHHHHHHHH----HHTTTCTTEEEEEEEEETT---EEEEEEEEEEESCHHHHHHGGGSHHHHH
T ss_pred             CCCcEEEEEEEEECCCCHHHHHHHHH----HHHhCCCCCEEEEEEecCC---CCCEEEEEEEECCHHHHHHHHcCHHHHH
Confidence            45589999999999886555444443    2233579999999998764   3567899999999999999999999999


Q ss_pred             HHHHhhccceeeeeee
Q 022676          150 VLKEHVMPYCHGLMNV  165 (293)
Q Consensus       150 vv~~~i~p~~e~~~vv  165 (293)
                      +.+. +.+.+++.-.+
T Consensus        93 ~~~~-~~~ll~~~p~i  107 (122)
T 4dn9_A           93 AIAC-GRPLIAALDEH  107 (122)
T ss_dssp             HHHH-HGGGEEEEEEE
T ss_pred             HHHH-HHHHhcCCCee
Confidence            9876 57888876444

>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}

Probab=95.45  E-value=0.073  Score=45.37  Aligned_cols=79  Identities=10%  Similarity=0.042  Sum_probs=52.1

Q ss_pred             CCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH
Q 022676           70 KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK  149 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~  149 (293)
                      ...|+.-|.-++++++-.++ ..+..........+.||-+++++-+....    -++.++++++|+|+++++..+|+|++
T Consensus        68 ~~~m~~vin~~~V~pg~~~~-Fe~~~~~~~~~l~~~pGfi~~~llr~~~~----~~y~~~t~Wes~eaf~aw~~S~~f~~  142 (172)
T 3tvz_A           68 KHPGFAVLNNIAVTQEGRPL-FENKFKNRAGKVENEPGFEAIRVLRPLDS----DTYVILTLWETERAFQDWQQSDSYKE  142 (172)
T ss_dssp             SCCSEEEEEEEECCGGGHHH-HHHHHTSSHHHHTTSTTEEEEEEEEESSS----SEEEEEEEESCHHHHHHHTCC-----
T ss_pred             CCCcEEEEEEEEcCCCcHHH-HHHHHHHhHHHHhcCCCceEEEEEecCCC----CEEEEEEEECCHHHHHHHHcCHHHHH
Confidence            45788888888887764433 33333333344556999999999876642    46889999999999999999999998


Q ss_pred             HHHH
Q 022676          150 VLKE  153 (293)
Q Consensus       150 vv~~  153 (293)
                      ..+.
T Consensus       143 ah~~  146 (172)
T 3tvz_A          143 AHKK  146 (172)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            6543

>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*

Probab=95.06  E-value=0.13  Score=41.22  Aligned_cols=91  Identities=12%  Similarity=0.008  Sum_probs=68.8

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeec---cC----CC-CC-CCceEEEEEEeCCHHHHHhhc
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGS---NF----NL-SS-EIYTHAVVIRLRSVEAFEMFV  258 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~---N~----Sp-~~-kGythafv~~F~s~eald~Y~  258 (293)
                      ||+.+.+++=|++.|.|+-.+=...=..|..++|| +.....-.   ..    .+ .. ..|+-...+-|+|.+|+++..
T Consensus        10 MiKli~ll~Rk~gmS~EeF~~~w~~Hapla~~lpG-l~~Y~q~~v~~~~~~~~~~~~~~~~~DgiaElwF~d~ea~~aa~   88 (116)
T 3hf5_A           10 MIRILYLLVKPESMSHEQFRKECVVHFQMSAGMPG-LHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFASEEQYQVYM   88 (116)
T ss_dssp             SEEEEEEEECCTTSCHHHHHHHHHHHHHHTTTCTT-CSEEEEEEEEECCCCCSSCBCCCCCCCEEEEEEESSHHHHHHHH
T ss_pred             eEEEEEEEecCCCcCHHHHHHHHHHHHHHHHhCcC-CccEEEEEEecCCCCCCCCcCCCCCcCEEEEEEECCHHHHHHHh
Confidence            89999999999999998887654366777788999 66554432   00    11 11 288989999999999999999


Q ss_pred             CChhHHHHHHhhhhccccceeE
Q 022676          259 GSSDYKEMWSNKFQPIIRTQLP  280 (293)
Q Consensus       259 ~hp~H~~~~~~~v~p~~e~i~v  280 (293)
                      .+|+.+++ .+-...++..+..
T Consensus        89 ~sp~~~a~-~~d~~~F~~~i~~  109 (116)
T 3hf5_A           89 ESDIRKAW-FEHGKYFIGQLKP  109 (116)
T ss_dssp             HCHHHHHH-HHHHHHHCSEEEE
T ss_pred             CCHHHHHH-HhhHHHhhhhhhh
Confidence            99999874 4567777776643

>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5

Probab=94.97  E-value=0.042  Score=43.42  Aligned_cols=78  Identities=9%  Similarity=-0.023  Sum_probs=59.3

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      .||.=|..++++++..+ +..+..... .+....||-+.+++-+.... .+.-.+.++++++|.|+++++..+|+|++..
T Consensus         6 ~Mi~vi~~~~V~~g~~~-~fe~~~~~~-~~l~~~pGFi~~~llr~~~~-~~~~~y~~~~~W~s~eaf~aw~~S~~f~~~~   82 (114)
T 1tz0_A            6 YMFIETKTFTVKEGTSN-IVVERFTGE-GIIEKFEGFIDLSVLVKKVR-RGDEEVVVMIRWESEEAWKNWETSEEHLAGH   82 (114)
T ss_dssp             CCEEEEEEEEECTTCHH-HHHHHTCSC-CSGGGBTTEEEEEEEECCCS-SSSEEEEEEEEESCHHHHHHHHTCSCCCGGG
T ss_pred             ceEEEEEEEEECCCcHH-HHHHHHhcc-chhhcCCCeeEEEEEEcCCC-CCCcEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            38888888888877544 444444444 66777999999998887652 1345789999999999999999999998744


Q ss_pred             H
Q 022676          152 K  152 (293)
Q Consensus       152 ~  152 (293)
                      +
T Consensus        83 ~   83 (114)
T 1tz0_A           83 R   83 (114)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}

Probab=94.96  E-value=0.055  Score=43.80  Aligned_cols=72  Identities=13%  Similarity=0.072  Sum_probs=52.1

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      ||.=|.-|++|++- .++..+....+.....+.||-+.+++-+....   .-.+.++.+++|+|+++++...|+..
T Consensus         2 mivvi~~~~V~pg~-~~efe~~~~~~~~~~~~~pGfl~~~L~r~~~~---p~~yv~~~~WeS~ea~~aw~~S~fr~   73 (124)
T 3hx9_A            2 PVVKINAIEVPAGA-GPELEKRFAHRAHAVENSPGFLGFQLLRPVKG---EERYFVVTHWESDEAFQAWANGPAIA   73 (124)
T ss_dssp             CEEEEEEECCCTTC-HHHHHHHHHHTTTTTTTCTTEEEEEEEEEEES---CCSEEEEEEESCHHHHHHHHHTHHHH
T ss_pred             EEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC---CCEEEEEEEECCHHHHHHHHhChHHH
Confidence            45556667776654 34455555555555667899999999886642   34578999999999999999999433

>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}

Probab=94.77  E-value=0.29  Score=39.04  Aligned_cols=85  Identities=7%  Similarity=-0.030  Sum_probs=64.6

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.=|+.++.|++.    .+++.+.|.....+-|| .+++.+..+..   ..-+..++-+++|.+++++....|..++ +
T Consensus        23 Mi~via~~~vkpg~----~~ef~~~l~~~~r~EpG-cl~y~l~~~~~---dp~~f~~~E~W~d~ea~~aH~~s~~f~~-~   93 (122)
T 4dn9_A           23 MYGLIGKMRATPGQ----RDALIAILVEGASSMPG-CLSYVVAQDPK---DPDAIWITEVWDSPESHKASLSLPSVQD-A   93 (122)
T ss_dssp             CEEEEEEEEESTTC----HHHHHHHHHHHTTTCTT-EEEEEEEEETT---EEEEEEEEEEESCHHHHHHGGGSHHHHH-H
T ss_pred             cEEEEEEEEECCCC----HHHHHHHHHHHHhCCCC-CEEEEEEecCC---CCCEEEEEEEECCHHHHHHHHcCHHHHH-H
Confidence            77778888888754    44555555555556799 99999988753   3346789999999999999999996655 6


Q ss_pred             HhhhhccccceeEE
Q 022676          268 SNKFQPIIRTQLPV  281 (293)
Q Consensus       268 ~~~v~p~~e~i~vv  281 (293)
                      .+.+.++++..-.+
T Consensus        94 ~~~~~~ll~~~p~i  107 (122)
T 4dn9_A           94 IACGRPLIAALDEH  107 (122)
T ss_dssp             HHHHGGGEEEEEEE
T ss_pred             HHHHHHHhcCCCee
Confidence            77999999876544

>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A

Probab=94.67  E-value=0.13  Score=39.62  Aligned_cols=78  Identities=6%  Similarity=0.014  Sum_probs=55.8

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      +||.-|..++.+++.. ++..+....+ ..-.+.|| .++++.-.+....+ +-.+.++..++|.++++++..+|.|++.
T Consensus         3 mMi~vi~~~~v~pg~~-~~f~~~~~~~-~~~~~~pG-~i~~~l~r~~~~~~-~~~~~~~~~W~s~ea~~a~~~s~~f~~~   78 (109)
T 2zdo_A            3 MKFMAEARLTLTKGTA-KDIIERFYTR-HGIETLEG-FDGMFVTQTLEQED-FDEVKILTVWKSKQAFTDWLKSDVFKAA   78 (109)
T ss_dssp             CCEEEEEEEEEETTCH-HHHHHHTTSC-CSGGGCTT-EEEEEEEEETTCSS-EEEEEEEEEESCHHHHHHHHTSHHHHHH
T ss_pred             EEEEEEEEEEeCCCCH-HHHHHHHhcc-cccccCCC-eEEEEEEecCCCCC-ceEEEEEEEECCHHHHHHHHcCHHHHHH
Confidence            5777788888887553 3333443333 44456799 98888877654321 2378899999999999999999998886


Q ss_pred             HH
Q 022676          267 WS  268 (293)
Q Consensus       267 ~~  268 (293)
                      .+
T Consensus        79 ~~   80 (109)
T 2zdo_A           79 HK   80 (109)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*

Probab=94.62  E-value=0.37  Score=41.80  Aligned_cols=108  Identities=9%  Similarity=0.043  Sum_probs=71.9

Q ss_pred             hhhhhhhccCCceeEEEEeecccccc---------ccc-----------ccCCCcEEEEEEEEecCCCCHHHHHHHHHHH
Q 022676           39 EAMSMRLSRERTVGTTVLASKEQSSS---------YNS-----------EKKRKVVEHICLLKAKKDLSEEEEKDMLDYL   98 (293)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----------~~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L   98 (293)
                      .++++++-..+.+.+++....+.+-=         +.+           .....++.-+.-++++++. +++.++.....
T Consensus        31 ~~L~~I~~~~~dr~l~l~~~~~~~~L~~et~~~svF~~p~~YeVL~s~G~l~~~gfvv~n~~~V~~g~-~~~Fe~~f~~~  109 (186)
T 3fj2_A           31 HYLRQLMENYIGENVTLLQNFSQSLLYQESTGEKLFQEGKEYRVLQSSGSLKGFGIVVFEYIQLRDEE-IPIFLQMYQHA  109 (186)
T ss_dssp             HHHHHHHHHTCSSSEEEEECSSCEEEEEEEESCCTTCCSEEEEEEEEEECCCSCSEEEEEEEECCGGG-HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCceEEEEcCCccEEEEcCCCCcccCCCceEEEeeccCCcCCCCEEEEEEEEcCccc-HHHHHHHHHHh
Confidence            45666666667777766655443210         000           0122345555566665554 44455555555


Q ss_pred             HhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           99 YTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        99 ~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      ......+||-+++++-+...    .-++.+++..+|+||++++...|+|++.-
T Consensus       110 ~~~l~~~pGFis~eLLr~~~----~~~yv~lT~WeseeaF~aW~~S~afr~ah  158 (186)
T 3fj2_A          110 SLHFSETPGLQSTKLTKAMN----TNQFLIVSFWDSEVFFQEWKKTPLHKEIT  158 (186)
T ss_dssp             HTTGGGSTTEEEEEEEEETT----SSEEEEEEEESSHHHHHHHTTSHHHHHHH
T ss_pred             HHhhhcCCCceEEEEEecCC----CCEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            55556799999999888654    46788999999999999999999999866

>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5

Probab=94.05  E-value=0.13  Score=41.82  Aligned_cols=73  Identities=12%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHh
Q 022676          191 FVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSN  269 (293)
Q Consensus       191 HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~  269 (293)
                      -.|.|++......+...++.+.+..|..+.|| -++++.-.|.    .| -..-+..++|.+|+++...+|+|+++.+.
T Consensus        14 ~aViFe~~~~~~~~~Y~~la~~~~~la~~qpG-FI~~Es~~~~----dg-~~is~SyW~deeai~aW~~~~eHr~Aq~~   86 (122)
T 2go8_A           14 YAVIFSSVKSENDTGYGETAERMVSLAADQPG-FLGVESVREA----DG-RGITVSYWDSMDAINHWRHHTEHQAAKEK   86 (122)
T ss_dssp             EEEEEEEECC------CHHHHHHHHHHHHSTT-EEEEEEEECT----TS-EEEEEEEESCHHHHHHHHHHC--------
T ss_pred             EEEEEEEEeCCchhHHHHHHHHHHHHHhhCCC-ceEEEEEEcC----CC-CEEEEEEeCCHHHHHHHHhCHHHHHHHHh
Confidence            36788888865566677889999999999999 8888843332    25 56778899999999999999999986654

>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15

Probab=93.84  E-value=0.24  Score=38.75  Aligned_cols=87  Identities=8%  Similarity=0.076  Sum_probs=61.3

Q ss_pred             cceeEEEEEEecCCCCCChHHHH-HHHHHHhhhhcCcceeeEEeec--cCCCCCCCceEEEEEEeCCHHHHHhhcCChhH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDA-LESLKRLTAEFPSLIVQSTQGS--NFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l-~~~l~~Lk~~iPg~I~~~t~G~--N~Sp~~kGythafv~~F~s~eald~Y~~hp~H  263 (293)
                      .||+.+|+++=+++  .++-++= .+.-.-|..++|| ++.++...  ......-+|.-...+.|+|.+++++....|+-
T Consensus         7 ~Mik~~vly~~~~~--~e~F~~yy~~~H~PL~~~~pg-l~~y~~~~~~~~~~~~~~yd~iael~fds~ea~~aa~~s~e~   83 (108)
T 2ftr_A            7 MMVKLIALYEQPED--KQAFDEHYFNTHAPLTRKIPG-LRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEG   83 (108)
T ss_dssp             EEEEEEEEEECCSC--HHHHHHHHHHTHHHHHTTSTT-CCEEEEEEEEEBTTBCCSEEEEEEEEESSHHHHHHHHHSHHH
T ss_pred             ceEEEEEEEeCCCC--HHHHHHHHHHhhHHHHhhCCC-ceEEEEEeccCCCCCCCCeeEEEEEEECCHHHHHHHHcCHhH
Confidence            69999999986654  3444333 4556678888999 88766543  22123458999999999999999999999977


Q ss_pred             HHHHHhhhhccccc
Q 022676          264 KEMWSNKFQPIIRT  277 (293)
Q Consensus       264 ~~~~~~~v~p~~e~  277 (293)
                      +++. +-+.-+++.
T Consensus        84 ~~~~-~D~~~F~d~   96 (108)
T 2ftr_A           84 KASG-KDAMKFAGK   96 (108)
T ss_dssp             HHHH-HHHHHHTGG
T ss_pred             HHHH-HHHHHhcCC
Confidence            6644 445455543

>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*

Probab=93.63  E-value=0.63  Score=40.29  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=81.9

Q ss_pred             EEEEEEECCHHHHHhhc-cCcchHHHHHHhhccceeeeeeeeeecccCCCccccccCC----------CCcccceeEEEE
Q 022676          126 HGVFMRFQRKEHLVKFY-ENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKG----------EDFNFGVEFVLL  194 (293)
Q Consensus       126 haL~s~F~s~edL~~Y~-~HP~H~~vv~~~i~p~~e~~~vvDye~~v~~~~~~~~~~g----------~~~~~~i~HIVl  194 (293)
                      .=++++|=|..=|+.-. .||.+.-+    ++...++.+.+|...+     .++|.-+          +-=+.|+.-+..
T Consensus        21 ~kiy~T~Gt~~~L~~I~~~~~dr~l~----l~~~~~~~~L~~et~~-----~svF~~p~~YeVL~s~G~l~~~gfvv~n~   91 (186)
T 3fj2_A           21 KKVFITTGTEHYLRQLMENYIGENVT----LLQNFSQSLLYQESTG-----EKLFQEGKEYRVLQSSGSLKGFGIVVFEY   91 (186)
T ss_dssp             EEEEEEEECHHHHHHHHHHTCSSSEE----EEECSSCEEEEEEEES-----CCTTCCSEEEEEEEEEECCCSCSEEEEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHCCCCceE----EEEcCCccEEEEcCCC-----CcccCCCceEEEeeccCCcCCCCEEEEEE
Confidence            34788999999888875 88888732    2233455566666432     3444433          222236555555


Q ss_pred             EEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          195 ISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       195 ~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ++.+++. .++.++........-+..|| .++++.=....    .=++.+++.++|++|++++..+++|+++.
T Consensus        92 ~~V~~g~-~~~Fe~~f~~~~~~l~~~pG-Fis~eLLr~~~----~~~yv~lT~WeseeaF~aW~~S~afr~ah  158 (186)
T 3fj2_A           92 IQLRDEE-IPIFLQMYQHASLHFSETPG-LQSTKLTKAMN----TNQFLIVSFWDSEVFFQEWKKTPLHKEIT  158 (186)
T ss_dssp             EECCGGG-HHHHHHHHHHHHTTGGGSTT-EEEEEEEEETT----SSEEEEEEEESSHHHHHHHTTSHHHHHHH
T ss_pred             EEcCccc-HHHHHHHHHHhHHhhhcCCC-ceEEEEEecCC----CCEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            5555533 23333444444444456799 88888777654    34566999999999999999999998866

>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*

Probab=92.99  E-value=0.15  Score=39.22  Aligned_cols=77  Identities=9%  Similarity=0.030  Sum_probs=53.3

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||.=|..|+.+++.. ++..+.+..+ ..-...|| .++++.-.+..... .-++.++.+++|.++++++..+|.|++..
T Consensus         2 Mi~vi~~~~v~pg~~-~~f~~~~~~~-~~~~~~pG-~l~~~l~r~~~~~~-~~~~~~~~~W~s~ea~~a~~~s~~f~~~~   77 (109)
T 1sqe_A            2 MFMAENRLQLQKGSA-EETIERFYNR-QGIETIEG-FQQMFVTKTLNTED-TDEVKILTIWESEDSFNNWLNSDVFKEAH   77 (109)
T ss_dssp             CEEEEEEEEECTTCH-HHHGGGGGCC-TTGGGSTT-EEEEEEEEETTCSS-SEEEEEEEEESCHHHHHHHHTSHHHHHCC
T ss_pred             EEEEEEEEEECCCcH-HHHHHHHhcc-cccccCCC-eEEEEEEEcCCCCC-CcEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            666677788777543 3333333333 44456799 99998887764311 14688999999999999999999887744


Q ss_pred             H
Q 022676          268 S  268 (293)
Q Consensus       268 ~  268 (293)
                      +
T Consensus        78 ~   78 (109)
T 1sqe_A           78 K   78 (109)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}

Probab=92.82  E-value=0.24  Score=39.99  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=57.5

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      +||.=|..|+.+++.. ++.++....+.....+.|| .++++.-.+....   =.+.++.+++|.++++++..+| .+++
T Consensus         1 Mmivvi~~~~V~pg~~-~efe~~~~~~~~~~~~~pG-fl~~~L~r~~~~p---~~yv~~~~WeS~ea~~aw~~S~-fr~a   74 (124)
T 3hx9_A            1 MPVVKINAIEVPAGAG-PELEKRFAHRAHAVENSPG-FLGFQLLRPVKGE---ERYFVVTHWESDEAFQAWANGP-AIAA   74 (124)
T ss_dssp             -CEEEEEEECCCTTCH-HHHHHHHHHTTTTTTTCTT-EEEEEEEEEEESC---CSEEEEEEESCHHHHHHHHHTH-HHHT
T ss_pred             CEEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCCC---CEEEEEEEECCHHHHHHHHhCh-HHHH
Confidence            3555556666665432 3333333333344445699 9999887765321   2367999999999999999999 5554


Q ss_pred             HHh-hhhccccceeEEeeEe
Q 022676          267 WSN-KFQPIIRTQLPVHFSV  285 (293)
Q Consensus       267 ~~~-~v~p~~e~i~vvDy~v  285 (293)
                      ... ..+|+....-.+-|++
T Consensus        75 h~~~~~~~~~~g~p~~efev   94 (124)
T 3hx9_A           75 HAGHRANPVATGASLLEFEV   94 (124)
T ss_dssp             TTTCCCCCCCCCEEEEEEEE
T ss_pred             hhcccCCCcccCCCceeEEE
Confidence            442 3567755544444554

>3fgv_A Uncharacterized protein with ferredoxin-like fold; phosphoserine aminotransferase SERC, structural genomics; HET: MSE; 1.30A {Silicibacter pomeroyi dss-3}

Probab=92.73  E-value=0.38  Score=37.75  Aligned_cols=82  Identities=11%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             EEEEEe--cCCCCHHHHHHHHHHHHhhhhcCCceEE--EEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           77 ICLLKA--KKDLSEEEEKDMLDYLYTSQYQMGGIVA--ISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        77 IVlfK~--K~~~s~e~~~~~~~~L~~L~~~IPgv~~--i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      +|..++  |++- .++..+++..+.....+-||=+.  +.+..+... ...|     .+++|.|||++|..-|.-+++..
T Consensus        16 ~Via~l~~kp~~-~~~~~~~~~~lv~~tr~e~Gci~~~y~L~qd~~~-p~~f-----E~W~s~eal~~h~~~~~~~~~~~   88 (106)
T 3fgv_A           16 VVIVKSTPQRGK-FNAFAELVGKLVSETRDFPGCLGAYLMLAPERNE-QVVM-----HIWETPDALEAYLTWRADRGDFL   88 (106)
T ss_dssp             EEEEEECBCTTC-HHHHHHHHHHHHHHHHTSTTEEEEEEEEEGGGTE-EEEE-----EEESSHHHHHHHHHHHTTCHHHH
T ss_pred             EEEEEEEECCCC-HHHHHHHHHHHHHHHhCCCCCCcceEEEecCCCC-CCEE-----EEECCHHHHHHHHcCHHHHHHHH
Confidence            355565  4443 33445555555555556899999  777765432 1212     99999999999999999999887


Q ss_pred             Hhhccceeeeeeee
Q 022676          153 EHVMPYCHGLMNVD  166 (293)
Q Consensus       153 ~~i~p~~e~~~vvD  166 (293)
                      ++ .+++++-..|.
T Consensus        89 ~l-~~lla~~p~I~  101 (106)
T 3fgv_A           89 EI-NEYLEVEQDFK  101 (106)
T ss_dssp             HG-GGGBSSCCEEE
T ss_pred             HH-HHHhcCCcEEE
Confidence            74 67777655444

>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin, dihydroka streptomyces coelicolor, oxidoreductase; HET: PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB: 1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*

Probab=92.54  E-value=0.26  Score=38.85  Aligned_cols=82  Identities=2%  Similarity=-0.005  Sum_probs=59.0

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhh----hhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhh----ccC
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTS----QYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKF----YEN  144 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L----~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y----~~H  144 (293)
                      -+..|+-|..   +.++..+++.+.+.++    ..+-||-++.++.+...    +.+.+++.+++|++++++.    ...
T Consensus         9 ~~v~iva~~~---~~pg~~~~~~~~l~~~~~~~~r~epG~i~y~Lh~~~d----~~~~v~~e~W~s~ea~~ah~~~~~~s   81 (112)
T 1lq9_A            9 GFVAVVTFPV---DGPATQHKLVELATGGVQEWIREVPGFLSATYHASTD----GTAVVNYAQWESEQAYRVNFGADPRS   81 (112)
T ss_dssp             CEEEEEEEEB---SSHHHHHHHHHHHTTTTTGGGGGSTTEEEEEEEEETT----SSEEEEEEEESCHHHHHHHTTTSHHH
T ss_pred             CEEEEEEEEe---cCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEEEcCC----CCeEEEEEEECCHHHHHHHHhcccCC
Confidence            3666666665   2344555555555554    34579999999997653    4566999999999999999    999


Q ss_pred             cchHHHHHHhhccceeee
Q 022676          145 PFYSKVLKEHVMPYCHGL  162 (293)
Q Consensus       145 P~H~~vv~~~i~p~~e~~  162 (293)
                      |..+++++. +.+.+.+.
T Consensus        82 ~~f~~~~~~-~~~l~~~~   98 (112)
T 1lq9_A           82 AELREALSS-LPGLMGPP   98 (112)
T ss_dssp             HHHHHHHHT-STTBCSCC
T ss_pred             HHHHHHHHH-hHHHhcCc
Confidence            999998876 45666555

>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}

Probab=91.94  E-value=1.2  Score=33.46  Aligned_cols=71  Identities=13%  Similarity=0.066  Sum_probs=51.6

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCC
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGS  260 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~h  260 (293)
                      -||.-|..|+.|++. .++..+.+..+.....+.|| .++.+.-.+.... ..|...++.+++|.+++++-..|
T Consensus         4 ~mi~~i~~~~v~pg~-~~~f~~~~~~~~~~~~~~pG-~i~~~l~~~~~~~-~~~~~~~~~~W~s~ea~~a~~~~   74 (99)
T 2ril_A            4 APVTLINPFKVPADK-LEAAIEYWEAHRDFMAQQPG-YLSTQLHQSIDEG-ATYQLINVAIWQSEADFYQAAQK   74 (99)
T ss_dssp             CCEEEEEEEBCCTTC-HHHHHHHHHHHHHHHTTSTT-EEEEEEEECSSTT-SSCSEEEEEEESCHHHHHHHHHH
T ss_pred             ceEEEEEEEEECCcc-HHHHHHHHHHHHHHHhcCCC-eeeEEEeecCCCC-CeEEEEEEEEECCHHHHHHHHHh
Confidence            478888888888764 34455555555555567899 8888887765432 34678999999999999995554

>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0

Probab=91.12  E-value=1.3  Score=33.90  Aligned_cols=67  Identities=13%  Similarity=0.261  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCC-CccEEEEEEECCHHHHHhhccCcchHHHHHHh
Q 022676           87 SEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVE-NYTHGVFMRFQRKEHLVKFYENPFYSKVLKEH  154 (293)
Q Consensus        87 s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~-gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~  154 (293)
                      +.+..++-.+.......+..|-.-+. |......+. .++..++++|.|.++..++..+|+.|+..+-.
T Consensus        15 d~e~y~~Y~~~~~~~l~~~GG~~l~r-g~~~~lEG~~~~~~~viieFps~~aa~a~y~SpeYq~a~~~R   82 (94)
T 3lo3_A           15 DAEKLQQYGARVASTLAKYSGEVLVK-GSVEQLHGKFEHKAQVILEFPSREDAYNWYHSEEYQALISTR   82 (94)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCEEEEE-EECEEEESCCCCSEEEEEEESSHHHHHHHHHSHHHHTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEE-cccccccCCCCCCeEEEEECCCHHHHHHHHCCHHHHHHHHHH
Confidence            35555555555555554455544443 322222233 48999999999999999999999999977544

>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}

Probab=89.72  E-value=3.3  Score=36.39  Aligned_cols=95  Identities=8%  Similarity=0.151  Sum_probs=74.3

Q ss_pred             CCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH
Q 022676           70 KRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK  149 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~  149 (293)
                      ...++.=++-++.|++-.++-.+.+.+-....+ +=||.+.+.+.++..   +.-.+.|+=.++|.+++++-...|..++
T Consensus       110 ~~~~~~via~~~vkp~~~e~~~~~~~~~~~~sr-~E~Gcl~y~~~~~~~---~p~~f~~~E~w~d~~A~~aH~~s~Hf~~  185 (219)
T 3mcs_A          110 NDNTFAVYTVIDVKPENDKEFAEIIKNIVETTF-NEEGTLLVYLGTDRR---NFNKWCLFEVYKDIDSYLNHRSAKYFKD  185 (219)
T ss_dssp             CTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH-HSTTEEEEEEEEETT---EEEEEEEEEEESSHHHHHHHHTSHHHHH
T ss_pred             CCCcEEEEEEEEECcCcHHHHHHHHHHHHHHHc-CCCCeEEEEEEecCC---CCCEEEEEEEECCHHHHHHHhcCHHHHH
Confidence            345677788999988766655554444444444 469999999998764   3568999999999999999999999999


Q ss_pred             HHHHhhccceeeeeeeeeec
Q 022676          150 VLKEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       150 vv~~~i~p~~e~~~vvDye~  169 (293)
                      +++. +.+.+++...++..+
T Consensus       186 ~~~~-~~~~l~~~~~~~l~~  204 (219)
T 3mcs_A          186 YITQ-TKDMIAGKKRAELQV  204 (219)
T ss_dssp             HHHH-HGGGEEEEEEEEEEE
T ss_pred             HHHH-HHHHHhCCceeeccc
Confidence            9987 579999888877754

>3fgv_A Uncharacterized protein with ferredoxin-like fold; phosphoserine aminotransferase SERC, structural genomics; HET: MSE; 1.30A {Silicibacter pomeroyi dss-3}

Probab=88.49  E-value=1.2  Score=34.88  Aligned_cols=72  Identities=11%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHHHhh---hhcCcceee--EEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccce
Q 022676          204 GPAEDALESLKRLT---AEFPSLIVQ--STQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQ  278 (293)
Q Consensus       204 e~i~~l~~~l~~Lk---~~iPg~I~~--~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i  278 (293)
                      +.++++++.+.+|.   .+-|| .++  +..-.+...     -.-| ..++|.+|+++|...|.-+. +.+.+.++++.-
T Consensus        26 ~~~~~~~~~~~~lv~~tr~e~G-ci~~~y~L~qd~~~-----p~~f-E~W~s~eal~~h~~~~~~~~-~~~~l~~lla~~   97 (106)
T 3fgv_A           26 GKFNAFAELVGKLVSETRDFPG-CLGAYLMLAPERNE-----QVVM-HIWETPDALEAYLTWRADRG-DFLEINEYLEVE   97 (106)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEGGGTE-----EEEE-EEESSHHHHHHHHHHHTTCH-HHHHGGGGBSSC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCC-CCcceEEEecCCCC-----CCEE-EEECCHHHHHHHHcCHHHHH-HHHHHHHHhcCC
Confidence            34455544444444   46799 988  665554322     2233 99999999999998886555 667899999876


Q ss_pred             eEEee
Q 022676          279 LPVHF  283 (293)
Q Consensus       279 ~vvDy  283 (293)
                      ..+.+
T Consensus        98 p~I~~  102 (106)
T 3fgv_A           98 QDFKT  102 (106)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            55543

>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5

Probab=88.48  E-value=0.58  Score=36.71  Aligned_cols=78  Identities=10%  Similarity=-0.000  Sum_probs=54.2

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      +||.=|..++.+++.. ++.++..... .+....|| -++++.=.+.... ..=.+.++++++|.++++++..+|+|+++
T Consensus         6 ~Mi~vi~~~~V~~g~~-~~fe~~~~~~-~~l~~~pG-Fi~~~llr~~~~~-~~~~y~~~~~W~s~eaf~aw~~S~~f~~~   81 (114)
T 1tz0_A            6 YMFIETKTFTVKEGTS-NIVVERFTGE-GIIEKFEG-FIDLSVLVKKVRR-GDEEVVVMIRWESEEAWKNWETSEEHLAG   81 (114)
T ss_dssp             CCEEEEEEEEECTTCH-HHHHHHTCSC-CSGGGBTT-EEEEEEEECCCSS-SSEEEEEEEEESCHHHHHHHHTCSCCCGG
T ss_pred             ceEEEEEEEEECCCcH-HHHHHHHhcc-chhhcCCC-eeEEEEEEcCCCC-CCcEEEEEEEECCHHHHHHHHcCHHHHHH
Confidence            4766666677776543 3444444444 55667899 8888776665421 12368899999999999999999999875


Q ss_pred             HH
Q 022676          267 WS  268 (293)
Q Consensus       267 ~~  268 (293)
                      .+
T Consensus        82 ~~   83 (114)
T 1tz0_A           82 HR   83 (114)
T ss_dssp             GS
T ss_pred             HH
Confidence            44

>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A

Probab=87.86  E-value=2.4  Score=35.02  Aligned_cols=96  Identities=11%  Similarity=0.128  Sum_probs=58.7

Q ss_pred             cCCCcEEEEEEEEecCC---------CCHHHHHHHHHHHHhhhhcCCceEEEEEeecCC---CCCCCccEEEEEEECCHH
Q 022676           69 KKRKVVEHICLLKAKKD---------LSEEEEKDMLDYLYTSQYQMGGIVAISLGRISN---ENVENYTHGVFMRFQRKE  136 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~---------~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s---~~~~gythaL~s~F~s~e  136 (293)
                      .....|.=+=|+|||+.         +..+..++=.+....+..+..|=.-+..|....   +....++.+++++|.|.+
T Consensus        20 ~~~~pv~MlNLlrf~~~a~y~dg~~vtd~e~y~~Y~~~~~~~l~~~GG~~l~rG~~~~~lEG~~~e~~~~~viieFPS~~   99 (143)
T 3hhl_A           20 DREGPIHMLNLVRLRPRAAYPDGRETTGAEAYAAYGRDSGPVSERLGGXVVWQGQFELMLIGPQDEHWDHVFIAEYPSVA   99 (143)
T ss_dssp             CCSSCEEEEEEEEECSBCCCTTCCCCBHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEESCTTCCCSEEEEEEESCHH
T ss_pred             CCCCCEEEEehhcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEeecCCceeEECCCCCCCCeEEEEECCCHH
Confidence            34456777778888862         233334444444444444455544444332221   112348999999999999


Q ss_pred             HHHhhccCcchHHHHHHhhccceeeeeee
Q 022676          137 HLVKFYENPFYSKVLKEHVMPYCHGLMNV  165 (293)
Q Consensus       137 dL~~Y~~HP~H~~vv~~~i~p~~e~~~vv  165 (293)
                      +..++..+|+.|++.+-. ...+++...+
T Consensus       100 aa~a~y~SpeYq~a~~~R-~~a~~~~rli  127 (143)
T 3hhl_A          100 AFVEMIRDPVYREAVKHR-QAAVEDSRLI  127 (143)
T ss_dssp             HHHHHHHCHHHHHHHHHH-HHHEEEEEEE
T ss_pred             HHHHHHcCHHHHHHHHHH-HHhhccceeE
Confidence            999999999999976543 3555543333

>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A

Probab=87.51  E-value=2.3  Score=35.13  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             CceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccceeEEeeEeCCCCC
Q 022676          239 IYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPVHFSVDPVGT  290 (293)
Q Consensus       239 Gythafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i~vvDy~v~~~g~  290 (293)
                      .++..++++|+|.++..++..+|+++++.+ .=...+++...+=....++|.
T Consensus        86 ~~~~~viieFPS~~aa~a~y~SpeYq~a~~-~R~~a~~~~rli~~~~~~~~~  136 (143)
T 3hhl_A           86 HWDHVFIAEYPSVAAFVEMIRDPVYREAVK-HRQAAVEDSRLIRLXPLKPGX  136 (143)
T ss_dssp             CCSEEEEEEESCHHHHHHHHHCHHHHHHHH-HHHHHEEEEEEEEEEECCSCC
T ss_pred             CCCeEEEEECCCHHHHHHHHcCHHHHHHHH-HHHHhhccceeEEecCCCCCc
Confidence            489999999999999999999999998643 444556655555555556664

>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin, dihydroka streptomyces coelicolor, oxidoreductase; HET: PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB: 1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*

Probab=86.89  E-value=0.99  Score=35.48  Aligned_cols=83  Identities=11%  Similarity=0.056  Sum_probs=56.9

Q ss_pred             eeEEEEEEecCCCCCChHHHHHHHHHHhh----hhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhh----cCC
Q 022676          189 VEFVLLISFIQSAFGGPAEDALESLKRLT----AEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMF----VGS  260 (293)
Q Consensus       189 i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk----~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y----~~h  260 (293)
                      +..|+.+..   +.++..+++.+.+.++.    .+-|| .++++.=.+.    .|-+..++..++|.+|+++.    ..+
T Consensus        10 ~v~iva~~~---~~pg~~~~~~~~l~~~~~~~~r~epG-~i~y~Lh~~~----d~~~~v~~e~W~s~ea~~ah~~~~~~s   81 (112)
T 1lq9_A           10 FVAVVTFPV---DGPATQHKLVELATGGVQEWIREVPG-FLSATYHAST----DGTAVVNYAQWESEQAYRVNFGADPRS   81 (112)
T ss_dssp             EEEEEEEEB---SSHHHHHHHHHHHTTTTTGGGGGSTT-EEEEEEEEET----TSSEEEEEEEESCHHHHHHHTTTSHHH
T ss_pred             EEEEEEEEe---cCcchHHHHHHHHHHHHHHHhhcCCC-eEEEEEEEcC----CCCeEEEEEEECCHHHHHHHHhcccCC
Confidence            334444444   23445566666666663    35699 8887766553    35566999999999999999    888


Q ss_pred             hhHHHHHHhhhhccccceeE
Q 022676          261 SDYKEMWSNKFQPIIRTQLP  280 (293)
Q Consensus       261 p~H~~~~~~~v~p~~e~i~v  280 (293)
                      |..++ +.+.+.++++...+
T Consensus        82 ~~f~~-~~~~~~~l~~~~~~  100 (112)
T 1lq9_A           82 AELRE-ALSSLPGLMGPPKA  100 (112)
T ss_dssp             HHHHH-HHHTSTTBCSCCEE
T ss_pred             HHHHH-HHHHhHHHhcCccc
Confidence            85555 66788888876643

>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}

Probab=86.76  E-value=5  Score=32.44  Aligned_cols=86  Identities=5%  Similarity=-0.049  Sum_probs=56.5

Q ss_pred             cceeEEEEEEecCCCCCChH-HHHHHHHHHhhhhc--CcceeeEEeeccC--C-C-CCCCceEEEEEEeCCHHHHHhhcC
Q 022676          187 FGVEFVLLISFIQSAFGGPA-EDALESLKRLTAEF--PSLIVQSTQGSNF--N-L-SSEIYTHAVVIRLRSVEAFEMFVG  259 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i-~~l~~~l~~Lk~~i--Pg~I~~~t~G~N~--S-p-~~kGythafv~~F~s~eald~Y~~  259 (293)
                      -||+-+||++=+++  ++=. +--.+.=.-|..++  |+ ++.++.....  . + ...+|.-...+.|+|.|++++-. 
T Consensus        19 ~MiKl~VlY~r~~d--~~Fd~dYY~~~H~PLv~~l~gp~-Lr~y~v~~~~~~~~~g~~~~yd~iael~FdS~eal~aA~-   94 (127)
T 3bf4_A           19 GMIKVNVMYPYTEG--ARFDHAYYCDRHMPMVKARLGSA-CAYYTVEKGLAGSASGAPPAFVAMCAFICDSAENFYAAM-   94 (127)
T ss_dssp             SCEEEEEEEECCTT--CCBCHHHHHHTHHHHHHHHHGGG-CSEEEEEEEEECSSTTCCCSEEEEEEEEESCHHHHHHHH-
T ss_pred             ccEEEEEEEcCCCC--cchhHHHHHhhHHHHHHHhcccc-ceEEEEEccccCCCCCCCCCEEEEEEEEECCHHHHHHHh-
Confidence            49999999998877  2222 32233344455555  77 6776654322  1 2 35689999999999999999988 


Q ss_pred             ChhHHHHHHhhhhccccc
Q 022676          260 SSDYKEMWSNKFQPIIRT  277 (293)
Q Consensus       260 hp~H~~~~~~~v~p~~e~  277 (293)
                      .|+ -+++.+-+.-+++.
T Consensus        95 ~~~-~~~v~aDv~nFtd~  111 (127)
T 3bf4_A           95 YYH-GAEILGDIANYTDI  111 (127)
T ss_dssp             HHH-HHHHHHTGGGTBCC
T ss_pred             Ccc-HHHHHhhHHHhCCC
Confidence            454 44455556556554

>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0

Probab=86.66  E-value=2  Score=32.75  Aligned_cols=71  Identities=11%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC-CCC-CceEEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676          192 VLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL-SSE-IYTHAVVIRLRSVEAFEMFVGSSDYKEMWS  268 (293)
Q Consensus       192 IVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp-~~k-Gythafv~~F~s~eald~Y~~hp~H~~~~~  268 (293)
                      |+.++.++   ++..++=.+....+-.+..|  .=+..| ..-. ... ..+..++++|+|.++..++..+|+++++..
T Consensus         8 i~~~~v~d---~e~y~~Y~~~~~~~l~~~GG--~~l~rg-~~~~lEG~~~~~~~viieFps~~aa~a~y~SpeYq~a~~   80 (94)
T 3lo3_A            8 IVGLTPKD---AEKLQQYGARVASTLAKYSG--EVLVKG-SVEQLHGKFEHKAQVILEFPSREDAYNWYHSEEYQALIS   80 (94)
T ss_dssp             EEEEEECC---HHHHHHHHHHHHHHHHTTTC--EEEEEE-ECEEEESCCCCSEEEEEEESSHHHHHHHHHSHHHHTTHH
T ss_pred             EEEEEECC---HHHHHHHHHHHHHHHHHcCC--EEEEEc-ccccccCCCCCCeEEEEECCCHHHHHHHHCCHHHHHHHH
Confidence            34444443   44444444445555555666  333345 3222 222 378999999999999999999999988544

>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}

Probab=86.53  E-value=1.5  Score=37.07  Aligned_cols=130  Identities=15%  Similarity=0.108  Sum_probs=77.5

Q ss_pred             EEEEEECCHHHHHhhc-cCcchHHHHHHhhccceeeeeeeeeecccCCCccccccCC----------CCcccceeEEEEE
Q 022676          127 GVFMRFQRKEHLVKFY-ENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKG----------EDFNFGVEFVLLI  195 (293)
Q Consensus       127 aL~s~F~s~edL~~Y~-~HP~H~~vv~~~i~p~~e~~~vvDye~~v~~~~~~~~~~g----------~~~~~~i~HIVl~  195 (293)
                      =++++|=|..=|+.-. .||.|.=    ++....+..+.+|...     -.++|.-+          +.=+.|+.-|..+
T Consensus         8 ~i~~t~Gt~~~L~~i~~~~~~~~l----~l~~~~~~~~l~~~t~-----~~svF~~p~~y~Vl~~~g~~~~~m~~vin~~   78 (172)
T 3tvz_A            8 KVYITYGTADFLKTIVKKHPSENI----LLMQGQENAILIHETS-----GDTVFQAPHAYEVIDQVGEIKHPGFAVLNNI   78 (172)
T ss_dssp             EEEEEEECHHHHHHHHHHCTTSEE----EEEEESSCEEEEEEES-----SCCCSSSCEEEEEEEEESCCSCCSEEEEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHCCCCce----EEEEcCCceEEEEecC-----CCcccCCCCEEEEEeccCCCCCCcEEEEEEE
Confidence            3778888888888875 8888862    1223455677777442     13444333          2224587777778


Q ss_pred             EecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHHhhhh
Q 022676          196 SFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQ  272 (293)
Q Consensus       196 kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~~~v~  272 (293)
                      +.+++.. ++.++........-...|| .++++.-.....    =++.++++++|.++++++..+|+++++.+ ...
T Consensus        79 ~V~pg~~-~~Fe~~~~~~~~~l~~~pG-fi~~~llr~~~~----~~y~~~t~Wes~eaf~aw~~S~~f~~ah~-~~g  148 (172)
T 3tvz_A           79 AVTQEGR-PLFENKFKNRAGKVENEPG-FEAIRVLRPLDS----DTYVILTLWETERAFQDWQQSDSYKEAHK-KRG  148 (172)
T ss_dssp             ECCGGGH-HHHHHHHTSSHHHHTTSTT-EEEEEEEEESSS----SEEEEEEEESCHHHHHHHTCC------------
T ss_pred             EcCCCcH-HHHHHHHHHhHHHHhcCCC-ceEEEEEecCCC----CEEEEEEEECCHHHHHHHHcCHHHHHHHH-hcC
Confidence            8776432 2333333333344456899 888887665432    35678999999999999999999988554 454

>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}

Probab=85.15  E-value=1.4  Score=35.71  Aligned_cols=80  Identities=4%  Similarity=-0.075  Sum_probs=49.4

Q ss_pred             CCCcEEEEEEEEecCCCCHHHH--HHHHHHHHhhhhcC--CceEEEEEeecC--C-C-CCCCccEEEEEEECCHHHHHhh
Q 022676           70 KRKVVEHICLLKAKKDLSEEEE--KDMLDYLYTSQYQM--GGIVAISLGRIS--N-E-NVENYTHGVFMRFQRKEHLVKF  141 (293)
Q Consensus        70 ~~~mI~HIVlfK~K~~~s~e~~--~~~~~~L~~L~~~I--Pgv~~i~~G~~~--s-~-~~~gythaL~s~F~s~edL~~Y  141 (293)
                      ...|++-+||++=+++   ++.  +-..+.=..|..++  ||++.+.+....  . + ...+|+-+-.+.|+|.|++++-
T Consensus        17 ~~~MiKl~VlY~r~~d---~~Fd~dYY~~~H~PLv~~l~gp~Lr~y~v~~~~~~~~~g~~~~yd~iael~FdS~eal~aA   93 (127)
T 3bf4_A           17 FQGMIKVNVMYPYTEG---ARFDHAYYCDRHMPMVKARLGSACAYYTVEKGLAGSASGAPPAFVAMCAFICDSAENFYAA   93 (127)
T ss_dssp             CCSCEEEEEEEECCTT---CCBCHHHHHHTHHHHHHHHHGGGCSEEEEEEEEECSSTTCCCSEEEEEEEEESCHHHHHHH
T ss_pred             cCccEEEEEEEcCCCC---cchhHHHHHhhHHHHHHHhccccceEEEEEccccCCCCCCCCCEEEEEEEEECCHHHHHHH
Confidence            4569999999998776   221  11111111233334  667777664322  1 1 2457999999999999999998


Q ss_pred             ccCcchHHHHHH
Q 022676          142 YENPFYSKVLKE  153 (293)
Q Consensus       142 ~~HP~H~~vv~~  153 (293)
                      . -|.=+++++.
T Consensus        94 ~-~~~~~~v~aD  104 (127)
T 3bf4_A           94 M-YYHGAEILGD  104 (127)
T ss_dssp             H-HHHHHHHHHT
T ss_pred             h-CccHHHHHhh
Confidence            7 4544554433

>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16

Probab=81.55  E-value=1.8  Score=33.37  Aligned_cols=40  Identities=20%  Similarity=0.123  Sum_probs=29.6

Q ss_pred             EEEEEEeCCHHHHHhhcCChhHHHHHHhhhhccccceeEE
Q 022676          242 HAVVIRLRSVEAFEMFVGSSDYKEMWSNKFQPIIRTQLPV  281 (293)
Q Consensus       242 hafv~~F~s~eald~Y~~hp~H~~~~~~~v~p~~e~i~vv  281 (293)
                      ..++++|+|.++..++..+|+++++..-.-.....+++++
T Consensus        55 ~~viieFpS~~aa~~~~~s~~Yq~a~~~R~~a~~~~~~iv   94 (99)
T 2fiu_A           55 RNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIV   94 (99)
T ss_dssp             EEEEEEESSHHHHHHHHHSHHHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHcCHHHHHHHHHHHhhhceeEEEE
Confidence            7799999999999999999999986554433333344433

>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16

Probab=81.43  E-value=6.1  Score=30.26  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHHhh
Q 022676           87 SEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEHV  155 (293)
Q Consensus        87 s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~i  155 (293)
                      ..+..++-.+.......+-.|=.-+..+.........-...++++|.|.++..++..+|+.|+..+-.-
T Consensus        16 d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~~eG~~~~~~viieFpS~~aa~~~~~s~~Yq~a~~~R~   84 (99)
T 2fiu_A           16 DSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQ   84 (99)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCcEEEEECCCceEEecCCcCeEEEEECCCHHHHHHHHcCHHHHHHHHHHH
Confidence            455555555555554444555443332211111111222788899999999999999999999776543

>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}

Probab=81.30  E-value=14  Score=29.20  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             eEEEEEEecCCCCCChHHHH-HHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676          190 EFVLLISFIQSAFGGPAEDA-LESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWS  268 (293)
Q Consensus       190 ~HIVl~kFk~~~s~e~i~~l-~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~  268 (293)
                      .-|++|++|++++++.-+.= .+.=-.+..++|+ +.++.+=...+.-+-.|.+.=++.++|.+++..=...|.-+.+.+
T Consensus         3 ~iv~~i~L~~g~d~~aFe~w~~evD~P~~~~Lps-VrsF~V~R~~~~g~~py~yiEvi~v~s~eaf~~~m~S~~~~~~~~   81 (105)
T 2jdj_A            3 TIIHKIRLFDVAQADAFEFWVQNVDYATCPDLPS-VVRFDVHRASLQANAPYHYVEVIKITDRAAFDADMETSTFAGLVQ   81 (105)
T ss_dssp             EEEEEEEESCGGGHHHHHHHHHHTHHHHGGGCTT-EEEEEEEECCCCTTCSCSEEEEEEESCHHHHHHHHTSHHHHHHHH
T ss_pred             EEEEEEecCCCCCHHHHHHHHHhchhhhccCCCc-ceeEEEEecccCCCCCeeEEEEEecCCHHHHHHHhcCHHHHHHHH
Confidence            35889999999987666643 4445577888999 999998666554445799999999999999999889998877554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1q4ra_	103	d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Th	2e-14
d1tr0a_	106	d.58.4.4 (A:) Boiling stable protein 1 {European a	3e-13
d1rjja_	111	d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thal	4e-13

>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 103

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Hypothetical protein AT3G17210.1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.7 bits (160), Expect = 2e-14
 Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 74  VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR-ISNENVEN-YTHGVFMR 131
           V+H+ L   K  +S E+ ++++         +  + A   G+ +S EN+   YTH     
Sbjct: 2   VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFEST 61

Query: 132 FQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
           F+ KE + ++  +P + +      +     ++ +DY+
Sbjct: 62  FESKEAVAEYIAHPAHVEF-ATIFLGSLDKVLVIDYK 97

>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Boiling stable protein 1
species: European aspen (Populus tremula) [TaxId: 113636]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 69  KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGR----ISNENVENY 124
           +  K+V+H  L + K +++ E+  + ++        +  + + + G      S E    Y
Sbjct: 2   RTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGY 61

Query: 125 THGVFMRFQRKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYE 168
           TH     F+ K  L ++ ++   +    E  +P     + +DY 
Sbjct: 62  THAFESTFESKSGLQEYLDSAALAAF-AEGFLPTLSQRLVIDYF 104

>d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Hypothetical protein AT5G22580
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 74  VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQ 133
            +H+ ++K K+D   +E    L+ L +    +            +   + +TH   M F+
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 134 RKEHLVKFYENPFYSKVLKEHVMPYCHGLMNVDYETE 170
            K+  V F  +P + +            ++ +D+   
Sbjct: 66  NKDGYVAFTSHPLHVEF-SAAFTAVIDKIVLLDFPVA 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1tr0a_	106	Boiling stable protein 1 {European aspen (Populus	99.95
d1q4ra_	103	Hypothetical protein AT3G17210.1 {Thale cress (Ara	99.94
d1tr0a_	106	Boiling stable protein 1 {European aspen (Populus	99.94
d1q4ra_	103	Hypothetical protein AT3G17210.1 {Thale cress (Ara	99.93
d1rjja_	111	Hypothetical protein AT5G22580 {Thale cress (Arabi	99.9
d1rjja_	111	Hypothetical protein AT5G22580 {Thale cress (Arabi	99.9
d2omoa1	98	Hypothetical protein NE0621 {Nitrosomonas europaea	96.84
d1iuja_	102	Hypothetical protein TT1380 {Thermus thermophilus	96.64
d2omoa1	98	Hypothetical protein NE0621 {Nitrosomonas europaea	96.55
d1y0ha_	101	Hypothetical protein Rv0793 {Mycobacterium tubercu	96.46
d1tuva_	103	Hypothetical protein YgiN {Escherichia coli [TaxId	96.26
d1x7va_	98	Hypothetical protein PA3566 {Pseudomonas aeruginos	96.2
d2ftra1	103	Hypothetical protein BH0200 {Bacillus halodurans [	95.87
d1x7va_	98	Hypothetical protein PA3566 {Pseudomonas aeruginos	95.82
d2ftra1	103	Hypothetical protein BH0200 {Bacillus halodurans [	95.51
d1y0ha_	101	Hypothetical protein Rv0793 {Mycobacterium tubercu	95.38
d2pd1a1	100	Hypothetical protein NE2512 {Nitrosomonas europaea	94.99
d1tuva_	103	Hypothetical protein YgiN {Escherichia coli [TaxId	94.89
d2go8a1	108	Hypothetical protein YqjZ {Bacillus subtilis [TaxI	94.76
d1tz0a_	108	Hypothetical protein BC2969 {Bacillus cereus [TaxI	94.55
d1iuja_	102	Hypothetical protein TT1380 {Thermus thermophilus	94.49
d2zdpa1	109	Hypothetical protein PG130 (SAV0165) {Staphylococc	94.37
d2pd1a1	100	Hypothetical protein NE2512 {Nitrosomonas europaea	94.27
d2go8a1	108	Hypothetical protein YqjZ {Bacillus subtilis [TaxI	93.31
d2pgca1	206	Uncharacterized protein GOS_2596953 {environmental	93.23
d1q8ba_	93	Hypothetical protein YjcS {Bacillus subtilis [TaxI	92.92
d1q8ba_	93	Hypothetical protein YjcS {Bacillus subtilis [TaxI	92.27
d2fiua1	95	Hypothetical protein Atu0297 {Agrobacterium tumefa	90.32
d2zdpa1	109	Hypothetical protein PG130 (SAV0165) {Staphylococc	89.44
d2fiua1	95	Hypothetical protein Atu0297 {Agrobacterium tumefa	87.46
d1xbwa_	109	Hypothetical protein IsdG {Staphylococcus aureus [	85.44
d1tz0a_	108	Hypothetical protein BC2969 {Bacillus cereus [TaxI	84.99

>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Boiling stable protein 1
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=99.95  E-value=1.5e-27  Score=189.22  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=93.3

Q ss_pred             cCCCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC----CCCCccEEEEEEECCHHHHHhhccC
Q 022676           69 KKRKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE----NVENYTHGVFMRFQRKEHLVKFYEN  144 (293)
Q Consensus        69 ~~~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~----~~~gythaL~s~F~s~edL~~Y~~H  144 (293)
                      +.++||+||||||||+++++++++++++.|++|+++||||+++++|+|.++    +.+||||+|+++|+|++||++|+.|
T Consensus         2 ~~~~Mi~HiVlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~~~e~l~~Y~~h   81 (106)
T d1tr0a_           2 RTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLDS   81 (106)
T ss_dssp             CCCCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHTC
T ss_pred             CCCCeEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCceEEEEEEccCCccccccCCCcCEEEEEEECCHHHHHHHhCC
Confidence            357899999999999999999999999999999999999999999999865    3578999999999999999999999


Q ss_pred             cchHHHHHHhhccceeeeeeeeeec
Q 022676          145 PFYSKVLKEHVMPYCHGLMNVDYET  169 (293)
Q Consensus       145 P~H~~vv~~~i~p~~e~~~vvDye~  169 (293)
                      |.|+++++ +++|.+++++++||+.
T Consensus        82 P~H~~~~~-~~~p~~~~~~v~Df~l  105 (106)
T d1tr0a_          82 AALAAFAE-GFLPTLSQRLVIDYFL  105 (106)
T ss_dssp             HHHHHHHH-HHGGGEEEEEEEEEEC
T ss_pred             HhHHHHHH-HHHHHhcceEEEeEEe
Confidence            99999875 6789999999999974

>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Hypothetical protein AT3G17210.1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=3.7e-27  Score=185.95  Aligned_cols=98  Identities=17%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC--CCCCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE--NVENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~--~~~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      +|+||||||||+++++++++++++.|++|+++||||+++++|+|.++  ..+||||+|+++|+|+|||++|+.||+|+++
T Consensus         1 PI~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~y~~~l~~~F~s~e~l~~Y~~hP~H~~~   80 (103)
T d1q4ra_           1 PVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEF   80 (103)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHHHHH
T ss_pred             CeEEEEEEEECCCCCHHHHHHHHHHHHHhhhhCceeEEEEeccccCCcccCCCccEEEEEEECCHHHHHHHhCCHhHHHH
Confidence            58999999999999999999999999999999999999999999875  4578999999999999999999999999999


Q ss_pred             HHHhhccceeeeeeeeeeccc
Q 022676          151 LKEHVMPYCHGLMNVDYETEV  171 (293)
Q Consensus       151 v~~~i~p~~e~~~vvDye~~v  171 (293)
                      ++. ++|++++++++|||+..
T Consensus        81 ~~~-~~p~~~~~~v~Dfe~~~  100 (103)
T d1q4ra_          81 ATI-FLGSLDKVLVIDYKPTS  100 (103)
T ss_dssp             HHH-HHHTEEEEEEEEECCCC
T ss_pred             HHH-HHHhhccEEEEeeEeeE
Confidence            865 68999999999999865

>d1tr0a_ d.58.4.4 (A:) Boiling stable protein 1 {European aspen (Populus tremula) [TaxId: 113636]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Boiling stable protein 1
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=99.94  E-value=1.2e-26  Score=184.05  Aligned_cols=97  Identities=18%  Similarity=0.299  Sum_probs=92.3

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC----CCCCceEEEEEEeCCHHHHHhhcCChh
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL----SSEIYTHAVVIRLRSVEAFEMFVGSSD  262 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp----~~kGythafv~~F~s~eald~Y~~hp~  262 (293)
                      -||+|||+||||+++++++++++++.|.+|+++||| |+++++|.|.++    +++|||||++++|+|++|+++|+.||.
T Consensus         5 ~Mi~HiVlfklk~~~~~~~~~~~~~~l~~l~~~ip~-i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~~~e~l~~Y~~hP~   83 (106)
T d1tr0a_           5 KLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPS-MKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEYLDSAA   83 (106)
T ss_dssp             CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTT-CCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHHHTCHH
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCc-eEEEEEEccCCccccccCCCcCEEEEEEECCHHHHHHHhCCHh
Confidence            399999999999999999999999999999999999 999999999976    478999999999999999999999999


Q ss_pred             HHHHHHhhhhccccceeEEeeEe
Q 022676          263 YKEMWSNKFQPIIRTQLPVHFSV  285 (293)
Q Consensus       263 H~~~~~~~v~p~~e~i~vvDy~v  285 (293)
                      |+++ .+.++|++++++++||++
T Consensus        84 H~~~-~~~~~p~~~~~~v~Df~l  105 (106)
T d1tr0a_          84 LAAF-AEGFLPTLSQRLVIDYFL  105 (106)
T ss_dssp             HHHH-HHHHGGGEEEEEEEEEEC
T ss_pred             HHHH-HHHHHHHhcceEEEeEEe
Confidence            9985 679999999999999985

>d1q4ra_ d.58.4.4 (A:) Hypothetical protein AT3G17210.1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Hypothetical protein AT3G17210.1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.8e-26  Score=181.92  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=92.8

Q ss_pred             eeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC--CCCCceEEEEEEeCCHHHHHhhcCChhHHHH
Q 022676          189 VEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL--SSEIYTHAVVIRLRSVEAFEMFVGSSDYKEM  266 (293)
Q Consensus       189 i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp--~~kGythafv~~F~s~eald~Y~~hp~H~~~  266 (293)
                      |+|||+||||+++++++++++++.|.+|+++||| |+++++|.|.++  +++|||||++++|+|++|+++|+.||.|+++
T Consensus         2 I~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~-i~~~~~G~~~~~~~~~~~y~~~l~~~F~s~e~l~~Y~~hP~H~~~   80 (103)
T d1q4ra_           2 VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEP-MKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAHPAHVEF   80 (103)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTT-CCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHSHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHHHhhhhCce-eEEEEeccccCCcccCCCccEEEEEEECCHHHHHHHhCCHhHHHH
Confidence            7999999999999999999999999999999999 999999999986  6899999999999999999999999999985


Q ss_pred             HHhhhhccccceeEEeeEeCCC
Q 022676          267 WSNKFQPIIRTQLPVHFSVDPV  288 (293)
Q Consensus       267 ~~~~v~p~~e~i~vvDy~v~~~  288 (293)
                       .+.++|++++++++||+...+
T Consensus        81 -~~~~~p~~~~~~v~Dfe~~~~  101 (103)
T d1q4ra_          81 -ATIFLGSLDKVLVIDYKPTSV  101 (103)
T ss_dssp             -HHHHHHTEEEEEEEEECCCCS
T ss_pred             -HHHHHHhhccEEEEeeEeeEe
Confidence             678999999999999987544

>d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Hypothetical protein AT5G22580
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=4.5e-24  Score=170.83  Aligned_cols=99  Identities=17%  Similarity=0.318  Sum_probs=88.9

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC---CCCCceEEEEEEeCCHHHHHhhcCChhH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL---SSEIYTHAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp---~~kGythafv~~F~s~eald~Y~~hp~H  263 (293)
                      .|++|||+||||++++.   +++.+.+.+|+++||| |+++++|.|.+.   +++|||||++++|+|+++++.|+.||.|
T Consensus         4 ~~~~HiVlfklk~~~~~---e~i~~~l~~L~~~Ip~-i~~~~~G~~~~~~~~~~~~~d~~l~~~F~~~e~l~~Y~~hP~H   79 (111)
T d1rjja_           4 SGFKHLVVVKFKEDTKV---DEILKGLENLVSQIDT-VKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLH   79 (111)
T ss_dssp             SEEEEEEEEECSSCCCH---HHHHHHHHHHHGGGGG-SCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHH
T ss_pred             CceEEEEEEEECCCCCH---HHHHHHHHHHHhcCcc-ceEEEEeccCCCcccccCCccEEEEEEEcCHHHHHHHhCCHhH
Confidence            48999999999998874   5667778889999999 999999999864   5789999999999999999999999999


Q ss_pred             HHHHHhhhhccccceeEEeeEeCCCCC
Q 022676          264 KEMWSNKFQPIIRTQLPVHFSVDPVGT  290 (293)
Q Consensus       264 ~~~~~~~v~p~~e~i~vvDy~v~~~g~  290 (293)
                      +++ .+.++|++++++++||++.++-+
T Consensus        80 ~~~-~~~~~p~~~~~~v~Df~~~~v~~  105 (111)
T d1rjja_          80 VEF-SAAFTAVIDKIVLLDFPVAAVKS  105 (111)
T ss_dssp             HHH-HHHHHHTCSEEEEEEEEECTTCC
T ss_pred             HHH-HHHHHHHhcceEEEeEEcccccC
Confidence            985 56899999999999999987744

>d1rjja_ d.58.4.4 (A:) Hypothetical protein AT5G22580 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Plant stress-induced protein
domain: Hypothetical protein AT5G22580
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=3.3e-24  Score=171.62  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=86.8

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC---CCCCccEEEEEEECCHHHHHhhccCcch
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE---NVENYTHGVFMRFQRKEHLVKFYENPFY  147 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~---~~~gythaL~s~F~s~edL~~Y~~HP~H  147 (293)
                      .++++||||||||++++.+++.+   .+.+|+++||||+++++|++.+.   ..++|||+|+++|+|+|+|++|+.||.|
T Consensus         3 ~~~~~HiVlfklk~~~~~e~i~~---~l~~L~~~Ip~i~~~~~G~~~~~~~~~~~~~d~~l~~~F~~~e~l~~Y~~hP~H   79 (111)
T d1rjja_           3 TSGFKHLVVVKFKEDTKVDEILK---GLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLH   79 (111)
T ss_dssp             SSEEEEEEEEECSSCCCHHHHHH---HHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHH
T ss_pred             CCceEEEEEEEECCCCCHHHHHH---HHHHHHhcCccceEEEEeccCCCcccccCCccEEEEEEEcCHHHHHHHhCCHhH
Confidence            35799999999999998876554   45556668999999999998764   2478999999999999999999999999


Q ss_pred             HHHHHHhhccceeeeeeeeeecccCCC
Q 022676          148 SKVLKEHVMPYCHGLMNVDYETEVEDD  174 (293)
Q Consensus       148 ~~vv~~~i~p~~e~~~vvDye~~v~~~  174 (293)
                      +++++. ++|++++++++||+.+..++
T Consensus        80 ~~~~~~-~~p~~~~~~v~Df~~~~v~~  105 (111)
T d1rjja_          80 VEFSAA-FTAVIDKIVLLDFPVAAVKS  105 (111)
T ss_dssp             HHHHHH-HHHTCSEEEEEEEEECTTCC
T ss_pred             HHHHHH-HHHHhcceEEEeEEcccccC
Confidence            999865 78999999999999877664

>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein NE0621
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.84  E-value=0.0067  Score=44.34  Aligned_cols=90  Identities=10%  Similarity=0.045  Sum_probs=68.2

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      |+.=||-+++|++-.++-.+.+.+.....+ +-||-+++++.++..   +.-++.++-.++|.++++++...|.++++..
T Consensus         1 M~~~i~~~~vkp~~~~~f~~~~~~~~~~~~-~epG~l~~~~~~~~~---~p~~~~~~E~w~s~~a~~~H~~s~~~~~~~~   76 (98)
T d2omoa1           1 MYVTIVYASVKTDKTEAFKEATRMNHEQSI-REPGNMRFDILQSAD---DPTRFVLYEAYKTRKDAAAHKETAHYLTWRD   76 (98)
T ss_dssp             SEEEEEEEEBCGGGHHHHHHHHHHHHHHHT-TSTTEEEEEEEEESS---CTTEEEEEEEESSHHHHHHHTTSHHHHHHHH
T ss_pred             CEEEEEEEEECcCcHHHHHHHHHHHHHHHh-cCCCcEEEEEEEcCC---CCCEEEEEEEECCHHHHHHHHhCHHHHHHHH
Confidence            566678888888766555554444444444 489999999998764   3567899999999999999999999999887


Q ss_pred             Hhhccceeeeeeeee
Q 022676          153 EHVMPYCHGLMNVDY  167 (293)
Q Consensus       153 ~~i~p~~e~~~vvDy  167 (293)
                      . +.+...+-..+.+
T Consensus        77 ~-~~~ll~~p~~~~~   90 (98)
T d2omoa1          77 T-VADWMAEPRKGVI   90 (98)
T ss_dssp             H-HGGGBSSCCEEEE
T ss_pred             H-HHHHhcCCCEEEE
Confidence            6 5687776555544

>d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein TT1380
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.0047  Score=45.91  Aligned_cols=77  Identities=12%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ||.=++-|++|++-.++- .+....+.......||-+.+.+-+....   .-.+.++.+++|+++++++..+|.|++..+
T Consensus         1 M~vv~~~~~vkpg~~~~f-~~~~~~~~~~~~~~pG~~~~~l~r~~~~---~~~~~~~~~W~s~ea~~a~~~s~~f~~a~~   76 (102)
T d1iuja_           1 MFVTMNRIPVRPEYAEQF-EEAFRQRARLVDRMPGFIRNLVLRPKNP---GDPYVVMTLWESEEAFRAWTESPAFKEGHA   76 (102)
T ss_dssp             CEEEEEEECBCGGGHHHH-HHHHHHHGGGGTTSTTEEEEEEEEESST---TSCEEEEEEESCHHHHHHHHTSHHHHHHTT
T ss_pred             CEEEEEEEEECCCcHHHH-HHHHHHHHHHHhcCcCceEEEEEcCCCC---CceEEEEEEECCHHHHHHHhcCHHHHHHHH
Confidence            454455677777654444 4444555565567999999999887542   346899999999999999999999998544


Q ss_pred             H
Q 022676          153 E  153 (293)
Q Consensus       153 ~  153 (293)
                      .
T Consensus        77 ~   77 (102)
T d1iuja_          77 R   77 (102)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein NE0621
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.55  E-value=0.011  Score=43.04  Aligned_cols=87  Identities=7%  Similarity=-0.025  Sum_probs=61.3

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhh---hcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTA---EFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYK  264 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~---~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~  264 (293)
                      |+.=|+.++.|++..    ++..+.+..+..   +=|| .+++++..+...   .=+..++-.++|.++++++...|.++
T Consensus         1 M~~~i~~~~vkp~~~----~~f~~~~~~~~~~~~~epG-~l~~~~~~~~~~---p~~~~~~E~w~s~~a~~~H~~s~~~~   72 (98)
T d2omoa1           1 MYVTIVYASVKTDKT----EAFKEATRMNHEQSIREPG-NMRFDILQSADD---PTRFVLYEAYKTRKDAAAHKETAHYL   72 (98)
T ss_dssp             SEEEEEEEEBCGGGH----HHHHHHHHHHHHHHTTSTT-EEEEEEEEESSC---TTEEEEEEEESSHHHHHHHTTSHHHH
T ss_pred             CEEEEEEEEECcCcH----HHHHHHHHHHHHHHhcCCC-cEEEEEEEcCCC---CCEEEEEEEECCHHHHHHHHhCHHHH
Confidence            555567777766543    444444444433   4599 999999887533   24578999999999999999998555


Q ss_pred             HHHHhhhhccccceeEEee
Q 022676          265 EMWSNKFQPIIRTQLPVHF  283 (293)
Q Consensus       265 ~~~~~~v~p~~e~i~vvDy  283 (293)
                       .+.+.++|++..-.-+.+
T Consensus        73 -~~~~~~~~ll~~p~~~~~   90 (98)
T d2omoa1          73 -TWRDTVADWMAEPRKGVI   90 (98)
T ss_dssp             -HHHHHHGGGBSSCCEEEE
T ss_pred             -HHHHHHHHHhcCCCEEEE
Confidence             488899999876544444

>d1y0ha_ d.58.4.11 (A:) Hypothetical protein Rv0793 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein Rv0793
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.015  Score=42.59  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      ..+|.-++-|+.|++-. ++..++++.+...-.+=||-..+.+-++..    .-++.++-+|+|.++++++...|..+++
T Consensus         3 s~~i~v~~~~~~kpg~~-~~~~~~l~~~~~~~r~E~Gcl~y~~~~~~d----~~~~~~~E~w~~~~a~~~H~~s~~~~~~   77 (101)
T d1y0ha_           3 TSPVAVIARFMPRPDAR-SALRALLDAMITPTRAEDGCRSYDLYESAD----GGELVLFERYRSRIALDEHRGSPHYLNY   77 (101)
T ss_dssp             TSCEEEEEEECBCGGGH-HHHHHHHHHHHHHHHHSTTEEEEEEEEETT----SSCEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred             CCcEEEEEEEEECCchH-HHHHHHHHHHHHHHhhCCCceEEEEEEcCC----CCEEEEEEEECCHHHHHHHhCCHHHHHH
Confidence            34677788899998854 444445555544444579999999876532    2367889999999999999999999998


Q ss_pred             HHHhhccceeeeeeee
Q 022676          151 LKEHVMPYCHGLMNVD  166 (293)
Q Consensus       151 v~~~i~p~~e~~~vvD  166 (293)
                      .+. +.+.+++...|-
T Consensus        78 ~~~-~~~~l~~~~~i~   92 (101)
T d1y0ha_          78 RAQ-VGELLTRPVAVT   92 (101)
T ss_dssp             HTT-SGGGBSSCCEEE
T ss_pred             HHH-HHHHhcCCCEEE
Confidence            865 567777644443

>d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein YgiN
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.042  Score=40.89  Aligned_cols=87  Identities=7%  Similarity=0.036  Sum_probs=64.4

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhc---CcceeeEEeeccCCC-----CCCCceEEEEEEeCCHHHHHhhcC
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEF---PSLIVQSTQGSNFNL-----SSEIYTHAVVIRLRSVEAFEMFVG  259 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~i---Pg~I~~~t~G~N~Sp-----~~kGythafv~~F~s~eald~Y~~  259 (293)
                      ||.=|+.++.|++.  +..+++++.|..+....   || ..++.+-.|...     ..+-=+.-++-.|.|.+++++...
T Consensus         1 Mi~via~i~~kpg~--e~~e~~~~~l~~~~~~tr~E~G-cl~Y~~~~d~~~~~~~~~~dp~~~~~~E~w~s~~a~~~H~~   77 (103)
T d1tuva_           1 MLTVIAEIRTRPGQ--HHRQAVLDQFAKIVPTVLKEEG-CHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQ   77 (103)
T ss_dssp             CEEEEEEEEECSST--THHHHHHHHHHHHHHHHHHSTT-EEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHT
T ss_pred             CeEEEEEEEECCCh--hHHHHHHHHHHHHHHHHhcCCC-cEEEEEEeccccccccCCCCCCEEEEEEEECCHHHHHHHhC
Confidence            67778888888763  33456666666665544   99 999999877531     223347789999999999999999


Q ss_pred             ChhHHHHHHhhhhccccce
Q 022676          260 SSDYKEMWSNKFQPIIRTQ  278 (293)
Q Consensus       260 hp~H~~~~~~~v~p~~e~i  278 (293)
                      .| |.+.+.+.+.+++++.
T Consensus        78 t~-h~~~f~~~~~~lv~~~   95 (103)
T d1tuva_          78 TP-HMKAYSEAVKGDVLEM   95 (103)
T ss_dssp             SH-HHHHHHHHHTTTEEEE
T ss_pred             CH-HHHHHHHHHHhhhccC
Confidence            99 5555788899998864

>d1x7va_ d.58.4.11 (A:) Hypothetical protein PA3566 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein PA3566
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.20  E-value=0.058  Score=39.19  Aligned_cols=89  Identities=9%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKV  150 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~v  150 (293)
                      .++|.-|+-++.|++--++-.+.+.+..... .+=||-+.+.+.++..   +.-.+.++-.++|.++++++...|..+++
T Consensus         3 s~~i~via~~~~kpg~~~~~~~~l~~~~~~t-~~epGcl~~~~~~~~~---~~~~~~~~E~w~d~~a~~~H~~s~~~~~~   78 (98)
T d1x7va_           3 STPLTLIATITAAPGHAEALERELRALVAPS-RAEAGCLQYDLHQDRH---DSHLFYMIEQWRDDAALERHQNTEHFLRF   78 (98)
T ss_dssp             SSCEEEEEEEEECTTCHHHHHHHHHHHHHHH-HHSTTEEEEEEEECSS---CTTEEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred             CCCEEEEEEEEECCCCHHHHHHHHHHHHHHH-HcCCCceEEEEEEcCC---CCCEEEEEEEECCHHHHHHHhcCHHHHHH
Confidence            3578899999999876554444443333333 3469999999998664   34578999999999999999999988988


Q ss_pred             HHHhhccceeeeee
Q 022676          151 LKEHVMPYCHGLMN  164 (293)
Q Consensus       151 v~~~i~p~~e~~~v  164 (293)
                      .+. +.|.+++..+
T Consensus        79 ~~~-~~~ll~~~~i   91 (98)
T d1x7va_          79 SRG-NEALLQNVKI   91 (98)
T ss_dssp             HTT-CGGGEEEEEE
T ss_pred             HHH-HHHhccCcEE
Confidence            754 6787765433

>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: EthD-like
domain: Hypothetical protein BH0200
species: Bacillus halodurans [TaxId: 86665]

Probab=95.87  E-value=0.011  Score=44.17  Aligned_cols=89  Identities=10%  Similarity=0.047  Sum_probs=63.8

Q ss_pred             ccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC--CCCCceEEEEEEeCCHHHHHhhcCChhH
Q 022676          186 NFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL--SSEIYTHAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       186 ~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp--~~kGythafv~~F~s~eald~Y~~hp~H  263 (293)
                      |+||+-+|+++=+++ .++-.+--.+.-..|..++|| +..+....-..+  .+..|.-.-.+.|+|.+++++-...|+.
T Consensus         2 ~mm~k~~vly~~~~d-~e~F~~yy~~~H~pl~~~~pg-~~~y~~~~~~~~~~~~~~~~~vae~~F~d~e~l~~a~~s~~~   79 (103)
T d2ftra1           2 NMMVKLIALYEQPED-KQAFDEHYFNTHAPLTRKIPG-LRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEG   79 (103)
T ss_dssp             CEEEEEEEEEECCSC-HHHHHHHHHHTHHHHHTTSTT-CCEEEEEEEEEBTTBCCSEEEEEEEEESSHHHHHHHHHSHHH
T ss_pred             CccEEEEEEEcCCCC-HHHHHHHHHHhhHHHHHhcCC-ccEEEEEeeccCCCCCCCeeEEEEEEECCHHHHHHHHcCcch
Confidence            689999999995543 223333446777788889999 887765533322  4567988899999999999988889988


Q ss_pred             HHHHHhhhhccccc
Q 022676          264 KEMWSNKFQPIIRT  277 (293)
Q Consensus       264 ~~~~~~~v~p~~e~  277 (293)
                      +++.. -+.-+++.
T Consensus        80 ~~v~~-D~~~F~~~   92 (103)
T d2ftra1          80 KASGK-DAMKFAGK   92 (103)
T ss_dssp             HHHHH-HHHHHTGG
T ss_pred             HHHHh-HHHhhcCC
Confidence            77554 44445544

>d1x7va_ d.58.4.11 (A:) Hypothetical protein PA3566 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein PA3566
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.82  E-value=0.065  Score=38.93  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=62.0

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      +|.-|+.++.|++-- ++..+++..+..-..+=|| ...+.+..+...   .=...++-.|.|.+++++....|..++ +
T Consensus         5 ~i~via~~~~kpg~~-~~~~~~l~~~~~~t~~epG-cl~~~~~~~~~~---~~~~~~~E~w~d~~a~~~H~~s~~~~~-~   78 (98)
T d1x7va_           5 PLTLIATITAAPGHA-EALERELRALVAPSRAEAG-CLQYDLHQDRHD---SHLFYMIEQWRDDAALERHQNTEHFLR-F   78 (98)
T ss_dssp             CEEEEEEEEECTTCH-HHHHHHHHHHHHHHHHSTT-EEEEEEEECSSC---TTEEEEEEEESSHHHHHHHHTSHHHHH-H
T ss_pred             CEEEEEEEEECCCCH-HHHHHHHHHHHHHHHcCCC-ceEEEEEEcCCC---CCEEEEEEEECCHHHHHHHhcCHHHHH-H
Confidence            466677788876543 3333344434333344599 999999886542   236779999999999999999996655 7


Q ss_pred             HhhhhccccceeE
Q 022676          268 SNKFQPIIRTQLP  280 (293)
Q Consensus       268 ~~~v~p~~e~i~v  280 (293)
                      .+.+.|++++..+
T Consensus        79 ~~~~~~ll~~~~i   91 (98)
T d1x7va_          79 SRGNEALLQNVKI   91 (98)
T ss_dssp             HTTCGGGEEEEEE
T ss_pred             HHHHHHhccCcEE
Confidence            8899999986554

>d2ftra1 d.58.4.15 (A:4-106) Hypothetical protein BH0200 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: EthD-like
domain: Hypothetical protein BH0200
species: Bacillus halodurans [TaxId: 86665]

Probab=95.51  E-value=0.025  Score=42.10  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             CCcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCC--CCCCccEEEEEEECCHHHHHhhccCcchH
Q 022676           71 RKVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNE--NVENYTHGVFMRFQRKEHLVKFYENPFYS  148 (293)
Q Consensus        71 ~~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~--~~~gythaL~s~F~s~edL~~Y~~HP~H~  148 (293)
                      +-||+-+||++-+++ .++-.+-..+.-..|..++||++..........  ....|+-+-.+.|+|.|++++-...|+-+
T Consensus         2 ~mm~k~~vly~~~~d-~e~F~~yy~~~H~pl~~~~pg~~~y~~~~~~~~~~~~~~~~~vae~~F~d~e~l~~a~~s~~~~   80 (103)
T d2ftra1           2 NMMVKLIALYEQPED-KQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEGK   80 (103)
T ss_dssp             CEEEEEEEEEECCSC-HHHHHHHHHHTHHHHHTTSTTCCEEEEEEEEEBTTBCCSEEEEEEEEESSHHHHHHHHHSHHHH
T ss_pred             CccEEEEEEEcCCCC-HHHHHHHHHHhhHHHHHhcCCccEEEEEeeccCCCCCCCeeEEEEEEECCHHHHHHHHcCcchH
Confidence            348999999996553 233344455555667788999998876543322  24569999999999999999888889988


Q ss_pred             HHHHH
Q 022676          149 KVLKE  153 (293)
Q Consensus       149 ~vv~~  153 (293)
                      ++.+.
T Consensus        81 ~v~~D   85 (103)
T d2ftra1          81 ASGKD   85 (103)
T ss_dssp             HHHHH
T ss_pred             HHHhH
Confidence            87754

>d1y0ha_ d.58.4.11 (A:) Hypothetical protein Rv0793 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein Rv0793
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.38  E-value=0.066  Score=38.89  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             eeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676          189 VEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWS  268 (293)
Q Consensus       189 i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~  268 (293)
                      |.-++.|+.|++.. ++..++++.+......=|| ...+.+-.+..   .+ +..++-.|+|.++++++...|..++ +.
T Consensus         6 i~v~~~~~~kpg~~-~~~~~~l~~~~~~~r~E~G-cl~y~~~~~~d---~~-~~~~~E~w~~~~a~~~H~~s~~~~~-~~   78 (101)
T d1y0ha_           6 VAVIARFMPRPDAR-SALRALLDAMITPTRAEDG-CRSYDLYESAD---GG-ELVLFERYRSRIALDEHRGSPHYLN-YR   78 (101)
T ss_dssp             EEEEEEECBCGGGH-HHHHHHHHHHHHHHHHSTT-EEEEEEEEETT---SS-CEEEEEEESSHHHHHHHHTSHHHHH-HH
T ss_pred             EEEEEEEEECCchH-HHHHHHHHHHHHHHhhCCC-ceEEEEEEcCC---CC-EEEEEEEECCHHHHHHHhCCHHHHH-HH
Confidence            44455566666432 3334444444444445699 98888754422   22 5668899999999999999996655 77


Q ss_pred             hhhhccccceeEEee
Q 022676          269 NKFQPIIRTQLPVHF  283 (293)
Q Consensus       269 ~~v~p~~e~i~vvDy  283 (293)
                      +.+.++++.-..+-+
T Consensus        79 ~~~~~~l~~~~~i~~   93 (101)
T d1y0ha_          79 AQVGELLTRPVAVTV   93 (101)
T ss_dssp             TTSGGGBSSCCEEEE
T ss_pred             HHHHHHhcCCCEEEE
Confidence            899999887443333

>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein NE2512
species: Nitrosomonas europaea [TaxId: 915]

Probab=94.99  E-value=0.096  Score=38.28  Aligned_cols=81  Identities=7%  Similarity=-0.048  Sum_probs=58.2

Q ss_pred             eeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676          189 VEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWS  268 (293)
Q Consensus       189 i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~  268 (293)
                      +.=+|.|+-|++. .++..+++..+......=|| ...+....+ .|    =++.++-+|.|.+++++....|..+ .+.
T Consensus         4 ~~~~v~~~~kpg~-~~~~~~~l~~~~~~~~~E~G-cl~y~~~~~-~p----~~~~~~E~w~d~~a~~aH~~s~~~~-~~~   75 (100)
T d2pd1a1           4 LALFVRLEAKPGQ-EAALADFLASALPLANAESG-TTAWFALKF-GP----STFGVFDAFADEAGRQAHLNGQIAA-ALM   75 (100)
T ss_dssp             EEEEEEEEBCTTC-HHHHHHHHHHTHHHHHTCTT-EEEEEEEEC-SS----SEEEEEEEESSHHHHHHHHTSHHHH-HHH
T ss_pred             EEEEEEEEECCCc-HHHHHHHHHHHHHHhhcCCC-eeEEEEecC-CC----cEEEEEEEeCChHHHHHHHcCHHHH-HHH
Confidence            3345667777764 34555555555555555699 888877654 22    2688999999999999999999554 577


Q ss_pred             hhhhccccc
Q 022676          269 NKFQPIIRT  277 (293)
Q Consensus       269 ~~v~p~~e~  277 (293)
                      +.+.++++.
T Consensus        76 ~~~~~ll~~   84 (100)
T d2pd1a1          76 ANAATLLSS   84 (100)
T ss_dssp             HHHHHHBSS
T ss_pred             HHhHHHhcC
Confidence            899999875

>d1tuva_ d.58.4.11 (A:) Hypothetical protein YgiN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein YgiN
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.34  Score=35.55  Aligned_cols=89  Identities=8%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             cEEEEEEEEecCCCC-HHHHHHHHHHHHhhhhcCCceEEEEEeecCCC-----CCCCccEEEEEEECCHHHHHhhccCcc
Q 022676           73 VVEHICLLKAKKDLS-EEEEKDMLDYLYTSQYQMGGIVAISLGRISNE-----NVENYTHGVFMRFQRKEHLVKFYENPF  146 (293)
Q Consensus        73 mI~HIVlfK~K~~~s-~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~-----~~~gythaL~s~F~s~edL~~Y~~HP~  146 (293)
                      ||.=|+.++.|++-. .++..+.++.+..-...=||-..+.+..+...     ..+.-++.++=.++|.+++++....|.
T Consensus         1 Mi~via~i~~kpg~e~~e~~~~~l~~~~~~tr~E~Gcl~Y~~~~d~~~~~~~~~~dp~~~~~~E~w~s~~a~~~H~~t~h   80 (103)
T d1tuva_           1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH   80 (103)
T ss_dssp             CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHH
T ss_pred             CeEEEEEEEECCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEEeccccccccCCCCCCEEEEEEEECCHHHHHHHhCCHH
Confidence            677788999998753 24444444444443334599999999876531     235568999999999999999999999


Q ss_pred             hHHHHHHhhccceeee
Q 022676          147 YSKVLKEHVMPYCHGL  162 (293)
Q Consensus       147 H~~vv~~~i~p~~e~~  162 (293)
                      .+++.+. +.+.+++.
T Consensus        81 ~~~f~~~-~~~lv~~~   95 (103)
T d1tuva_          81 MKAYSEA-VKGDVLEM   95 (103)
T ss_dssp             HHHHHHH-HTTTEEEE
T ss_pred             HHHHHHH-HHhhhccC
Confidence            9999876 46766654

>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein YqjZ
species: Bacillus subtilis [TaxId: 1423]

Probab=94.76  E-value=0.033  Score=42.53  Aligned_cols=72  Identities=7%  Similarity=0.057  Sum_probs=47.7

Q ss_pred             EEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676           76 HICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE  153 (293)
Q Consensus        76 HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~  153 (293)
                      =.|+|..+.....+.=.++.+.|..|..++||-+.++--++.    .|. .+-++-++|.+++++...||+|+. +++
T Consensus        12 yaViF~~~~~~~~~~Y~~~a~~m~~la~~~pGflg~es~~~~----~g~-~itiSyW~d~~ai~~Wr~~~~H~~-Aq~   83 (108)
T d2go8a1          12 YAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREA----DGR-GITVSYWDSMDAINHWRHHTEHQA-AKE   83 (108)
T ss_dssp             EEEEEEEECC------CHHHHHHHHHHHHSTTEEEEEEEECT----TSE-EEEEEEESCHHHHHHHHHHC--------
T ss_pred             EEEEEEEEeCCCcchHHHHHHHHHHHHHhCCCccEEEEEEcC----CCC-EEEEEEECCHHHHHHHHhCHHHHH-HHH
Confidence            567787766555566778889999999999999999865543    232 466778999999999999999997 444

>d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein BC2969
species: Bacillus cereus [TaxId: 1396]

Probab=94.55  E-value=0.037  Score=42.06  Aligned_cols=75  Identities=9%  Similarity=-0.016  Sum_probs=56.1

Q ss_pred             CcEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHH
Q 022676           72 KVVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSK  149 (293)
Q Consensus        72 ~mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~  149 (293)
                      .||.=|.-|+++++-.++-++.+ .. .+..+++||-+.+++=+..+. .+...+..++..+|++++++|...|+|.+
T Consensus         2 ~M~Vv~n~~~v~~g~~~~~~~rf-~~-~~~le~~pGF~~~ellr~~~~-~~~~~~~v~t~Wedeeaf~aW~~S~~f~~   76 (108)
T d1tz0a_           2 YMFIETKTFTVKEGTSNIVVERF-TG-EGIIEKFEGFIDLSVLVKKVR-RGDEEVVVMIRWESEEAWKNWETSEEHLA   76 (108)
T ss_dssp             CCEEEEEEEEECTTCHHHHHHHT-CS-CCSGGGBTTEEEEEEEECCCS-SSSEEEEEEEEESCHHHHHHHHTCSCCCG
T ss_pred             eEEEEEEEEEeCCCCHHHHHHHh-cc-ccchhhcccceeEEEEeCCCC-CCCeEEEEEEEECCHHHHHHHHcChHHHH
Confidence            47777888888887766555555 33 345678999999996654332 23335788899999999999999999987

>d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein TT1380
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.064  Score=39.37  Aligned_cols=68  Identities=21%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             EEEEEecCCCCCChHHHHHHHHHHhh---hhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          192 VLLISFIQSAFGGPAEDALESLKRLT---AEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       192 IVl~kFk~~~s~e~i~~l~~~l~~Lk---~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      |..|+.|+    +..++..+.+..+.   ...|| .+++..-.+...   .=.+.++.+++|.++++++..+|.|+++.
T Consensus         5 ~~~~~vkp----g~~~~f~~~~~~~~~~~~~~pG-~~~~~l~r~~~~---~~~~~~~~~W~s~ea~~a~~~s~~f~~a~   75 (102)
T d1iuja_           5 MNRIPVRP----EYAEQFEEAFRQRARLVDRMPG-FIRNLVLRPKNP---GDPYVVMTLWESEEAFRAWTESPAFKEGH   75 (102)
T ss_dssp             EEEECBCG----GGHHHHHHHHHHHGGGGTTSTT-EEEEEEEEESST---TSCEEEEEEESCHHHHHHHHTSHHHHHHT
T ss_pred             EEEEEECC----CcHHHHHHHHHHHHHHHhcCcC-ceEEEEEcCCCC---CceEEEEEEECCHHHHHHHhcCHHHHHHH
Confidence            33444454    33444444444444   46799 888888765432   23578999999999999999999998743

>d2zdpa1 d.58.4.5 (A:0-108) Hypothetical protein PG130 (SAV0165) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein PG130 (SAV0165)
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.37  E-value=0.052  Score=41.11  Aligned_cols=76  Identities=8%  Similarity=0.125  Sum_probs=57.6

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVL  151 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv  151 (293)
                      |+.=++-|+++++-.++-++.+.+. .. ....||-+.+++=+.... .+...+..+++.+|+|++++|...++|.+.-
T Consensus         2 M~vv~n~~~V~~g~~~~fe~~f~~~-~~-l~~~pGF~~~~llr~~~~-~d~~~y~v~t~Weseeaf~aW~~S~~Fr~aH   77 (109)
T d2zdpa1           2 MFMAENRLQLQKGSAEETIERFYNR-QG-IETIEGFQQMFVTKTLNT-EDTDEVKILTIWESEDSFNNWLNSDVFKEAH   77 (109)
T ss_dssp             CEEEEEEEEECTTCHHHHHHTTSSC-CS-GGGSTTEEEEEEEEECSC-CSSEEEEEEEEESCHHHHHHHHTSHHHHHHT
T ss_pred             EEEEEEEEEeCCCcHHHHHHHHhcc-cc-hhcCCCcceEEEEecCCC-CCCeEEEEEEEECCHHHHHHHHcCHHHHHHH
Confidence            6666778888887766655555432 33 466999999998875542 3445789999999999999999999999854

>d2pd1a1 d.58.4.11 (A:1-100) Hypothetical protein NE2512 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PA3566-like
domain: Hypothetical protein NE2512
species: Nitrosomonas europaea [TaxId: 915]

Probab=94.27  E-value=0.17  Score=36.88  Aligned_cols=81  Identities=16%  Similarity=0.123  Sum_probs=61.0

Q ss_pred             EEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHHH
Q 022676           74 VEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKE  153 (293)
Q Consensus        74 I~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~  153 (293)
                      +.=+|-|+.|++- .++..++++.+......=||...+.+..+     +.-++.++-+|+|.++++++...|..+++.+.
T Consensus         4 ~~~~v~~~~kpg~-~~~~~~~l~~~~~~~~~E~Gcl~y~~~~~-----~p~~~~~~E~w~d~~a~~aH~~s~~~~~~~~~   77 (100)
T d2pd1a1           4 LALFVRLEAKPGQ-EAALADFLASALPLANAESGTTAWFALKF-----GPSTFGVFDAFADEAGRQAHLNGQIAAALMAN   77 (100)
T ss_dssp             EEEEEEEEBCTTC-HHHHHHHHHHTHHHHHTCTTEEEEEEEEC-----SSSEEEEEEEESSHHHHHHHHTSHHHHHHHHH
T ss_pred             EEEEEEEEECCCc-HHHHHHHHHHHHHHhhcCCCeeEEEEecC-----CCcEEEEEEEeCChHHHHHHHcCHHHHHHHHH
Confidence            4456888899986 45555555555554456899998887763     23479999999999999999999999999875


Q ss_pred             hhccceee
Q 022676          154 HVMPYCHG  161 (293)
Q Consensus       154 ~i~p~~e~  161 (293)
                       +.+.+++
T Consensus        78 -~~~ll~~   84 (100)
T d2pd1a1          78 -AATLLSS   84 (100)
T ss_dssp             -HHHHBSS
T ss_pred             -hHHHhcC
Confidence             4566654

>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein YqjZ
species: Bacillus subtilis [TaxId: 1423]

Probab=93.31  E-value=0.1  Score=39.62  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=47.2

Q ss_pred             EEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHHH
Q 022676          191 FVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMWS  268 (293)
Q Consensus       191 HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~~  268 (293)
                      -+|.|+.+.....++-.++-+.|..|..+.|| .++++-=.|.    .|. -..+..++|.+++++...||+|+.+.+
T Consensus        12 yaViF~~~~~~~~~~Y~~~a~~m~~la~~~pG-flg~es~~~~----~g~-~itiSyW~d~~ai~~Wr~~~~H~~Aq~   83 (108)
T d2go8a1          12 YAVIFSSVKSENDTGYGETAERMVSLAADQPG-FLGVESVREA----DGR-GITVSYWDSMDAINHWRHHTEHQAAKE   83 (108)
T ss_dssp             EEEEEEEECC------CHHHHHHHHHHHHSTT-EEEEEEEECT----TSE-EEEEEEESCHHHHHHHHHHC-------
T ss_pred             EEEEEEEEeCCCcchHHHHHHHHHHHHHhCCC-ccEEEEEEcC----CCC-EEEEEEECCHHHHHHHHhCHHHHHHHH
Confidence            36888887654455566899999999999999 8777744442    343 356778999999999999999988543

>d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {environmental samples}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Marine metagenome family DABB3
domain: Uncharacterized protein GOS 2596953
species: environmental samples

Probab=93.23  E-value=1.6  Score=34.96  Aligned_cols=152  Identities=10%  Similarity=0.037  Sum_probs=86.0

Q ss_pred             ceEEEEEeecCCCCCCCccEEEEEEECCHHHHH----hhccCcchHHHHHHhhccceeeeeeeeeecccCCCccccccCC
Q 022676          107 GIVAISLGRISNENVENYTHGVFMRFQRKEHLV----KFYENPFYSKVLKEHVMPYCHGLMNVDYETEVEDDILPIFRKG  182 (293)
Q Consensus       107 gv~~i~~G~~~s~~~~gythaL~s~F~s~edL~----~Y~~HP~H~~vv~~~i~p~~e~~~vvDye~~v~~~~~~~~~~g  182 (293)
                      |.....+|....- ...-||.++..|+|.++.+    .|+..|+-++++++.-. ....+...-+.....++..+-   +
T Consensus        38 Ga~~~~~~~v~~G-~~~gt~~i~~~y~s~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~---~  112 (206)
T d2pgca1          38 GAKGTRFGSIGTG-DHAGSLIFIQFYDDLTGYQKALEIQSKSSVFKEIMDSGKA-NIYLRNISTSLPTKFEQSYEH---P  112 (206)
T ss_dssp             CCCCEEEEEECSB-TTTTCEEEEEEESSHHHHHHHHHHHHHCHHHHHHHHHTCE-EEEEEEEEEECCCSCCCCCSC---C
T ss_pred             CCeEEEEEEEecC-CCcCcEEEEEEcCCHHHHHHHHHHhcCCHHHHHHHHhcCC-CcchhhehhheeeecCCCCCC---C
Confidence            5555567766543 3445999999999998765    56799999998876422 222222222211111111110   0


Q ss_pred             CCcccceeEEEEEEecCCCCCChHHHHHHHHHHhhhhc--CcceeeEEeeccCCCCCCCceEEEEEEeCCHHHH----Hh
Q 022676          183 EDFNFGVEFVLLISFIQSAFGGPAEDALESLKRLTAEF--PSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAF----EM  256 (293)
Q Consensus       183 ~~~~~~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~i--Pg~I~~~t~G~N~Sp~~kGythafv~~F~s~eal----d~  256 (293)
                             +=+++..+.-  ...+..+.++.+..|...+  .+ ..++.+|.=... ..+.||.+++.|+|.+++    |.
T Consensus       113 -------~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~i~~G-~~~~th~v~~~~~Sm~~l~~~~d~  181 (206)
T d2pgca1         113 -------KYIVLTRAEA--AMSDKDKFLNCINDTASCFKDNG-ALTLRFGNLLTG-SNVGNYLLGVGYPSMEAIEKTYDE  181 (206)
T ss_dssp             -------SEEEEEEEEC--CGGGHHHHHHHHHHTHHHHHHTT-CCEEEEEEBCSB-TTTTCEEEEEEESCHHHHHHHHHH
T ss_pred             -------ceEEEEEEEc--CCCCHHHHHHHHHHHHHHHhccC-CceEEEEeeecC-CCcceEEEEEeCCCHHHHHHHHHH
Confidence                   1235555643  3333455555555554422  22 234444443322 456799999999999876    46


Q ss_pred             hcCChhHHHHHHhhhhccc
Q 022676          257 FVGSSDYKEMWSNKFQPII  275 (293)
Q Consensus       257 Y~~hp~H~~~~~~~v~p~~  275 (293)
                      ...+|+.++ +.+++....
T Consensus       182 ~~~s~~f~~-f~~~~~~~~  199 (206)
T d2pgca1         182 LLAHSSYKE-LMTFAKVNM  199 (206)
T ss_dssp             HHTCHHHHH-HTTTCEEEE
T ss_pred             hhCCHHHHH-HHHHcccch
Confidence            668998887 445666433

>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Hypothetical protein YjcS
domain: Hypothetical protein YjcS
species: Bacillus subtilis [TaxId: 1423]

Probab=92.92  E-value=0.59  Score=33.70  Aligned_cols=84  Identities=6%  Similarity=-0.118  Sum_probs=55.7

Q ss_pred             ceeEEEEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCCCCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          188 GVEFVLLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNLSSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       188 ~i~HIVl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      ||-=+..+|++++...++..+.++.+.....+=|| ...+.+..+....   =+.-+.-.+.|.+++++....|..++ +
T Consensus         2 M~~v~a~~~v~~d~~~~~~~~~l~~l~~~tr~E~G-cl~y~~~~d~~~p---~~~~~~E~w~d~~a~~~H~~~~h~k~-f   76 (93)
T d1q8ba_           2 MHYITACLKIISDKDLNEIMKEFKKLEEETNKEEG-CITFHAYPLEPSE---RKIMLWEIWENEEAVKIHFTKKHTID-V   76 (93)
T ss_dssp             EEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTT-EEEEEEEECCGGG---CEEEEEEEESSHHHHHHHTTSHHHHH-H
T ss_pred             eEEEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCC-cEEEEEEecCCCC---CEEEEEEEECCHHHHHHHhcCHHHHH-H
Confidence            44444557776655544444444444444445599 9999999876432   25779999999999999999996655 4


Q ss_pred             Hhhhhcccc
Q 022676          268 SNKFQPIIR  276 (293)
Q Consensus       268 ~~~v~p~~e  276 (293)
                      .+...+.++
T Consensus        77 ~a~~~~~ve   85 (93)
T d1q8ba_          77 QKQELTEVE   85 (93)
T ss_dssp             HTTTCEEEE
T ss_pred             HHhccchhh
Confidence            444445544

>d1q8ba_ d.58.4.6 (A:) Hypothetical protein YjcS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Hypothetical protein YjcS
domain: Hypothetical protein YjcS
species: Bacillus subtilis [TaxId: 1423]

Probab=92.27  E-value=0.77  Score=33.04  Aligned_cols=78  Identities=12%  Similarity=0.056  Sum_probs=63.3

Q ss_pred             cEEEEEEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           73 VVEHICLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        73 mI~HIVlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      ||-=+..+|++++...++..+.++.+.+.-.+=||-..+.+.++...   .-.+.++=+++|.+++++....|..+++.+
T Consensus         2 M~~v~a~~~v~~d~~~~~~~~~l~~l~~~tr~E~Gcl~y~~~~d~~~---p~~~~~~E~w~d~~a~~~H~~~~h~k~f~a   78 (93)
T d1q8ba_           2 MHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPS---ERKIMLWEIWENEEAVKIHFTKKHTIDVQK   78 (93)
T ss_dssp             EEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTTEEEEEEEECCGG---GCEEEEEEEESSHHHHHHHTTSHHHHHHHT
T ss_pred             eEEEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCCcEEEEEEecCCC---CCEEEEEEEECCHHHHHHHhcCHHHHHHHH
Confidence            55556678888888877777777777776666799999999987642   457899999999999999999999998876


Q ss_pred             H
Q 022676          153 E  153 (293)
Q Consensus       153 ~  153 (293)
                      +
T Consensus        79 ~   79 (93)
T d1q8ba_          79 Q   79 (93)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Atu0297-like
domain: Hypothetical protein Atu0297
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.32  E-value=0.91  Score=32.80  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHhhhhcCCceEEEEEeecCC-CCCCCccEEEEEEECCHHHHHhhccCcchHHHHHHh
Q 022676           87 SEEEEKDMLDYLYTSQYQMGGIVAISLGRISN-ENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLKEH  154 (293)
Q Consensus        87 s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s-~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~~~  154 (293)
                      +++..++=.+....+..+-.|= -+..|.... ..+...+...+++|.|.|+..++.++|++|++.+..
T Consensus        14 d~e~~~~Y~~~~~~~~~~~GG~-~l~rg~~~~~~EG~~~~~~viieFps~e~A~~~~~SpeYq~~~~~R   81 (95)
T d2fiua1          14 DSERYKDYVSTAKPAFERFGAN-FLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIR   81 (95)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCE-EEEESCCEEEEESCCCSEEEEEEESSHHHHHHHHHSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCE-EEEECCceEEecCCCCceEEEEEcCCHHHHHHHHCCHHHHHHHHHH
Confidence            3556666666666666555553 233332221 123345556778999999999999999999977544

>d2zdpa1 d.58.4.5 (A:0-108) Hypothetical protein PG130 (SAV0165) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein PG130 (SAV0165)
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.44  E-value=0.18  Score=37.91  Aligned_cols=74  Identities=14%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHH---HHhhhhcCcceeeEEeeccCCCCCCC-ceEEEEEEeCCHHHHHhhcCChh
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESL---KRLTAEFPSLIVQSTQGSNFNLSSEI-YTHAVVIRLRSVEAFEMFVGSSD  262 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l---~~Lk~~iPg~I~~~t~G~N~Sp~~kG-ythafv~~F~s~eald~Y~~hp~  262 (293)
                      +|+-=+..|+++++-.    ++..+.+   ..| +..|| .++++.=.+.+  ..| ..+..++..+|++++++|..++.
T Consensus         1 ~M~vv~n~~~V~~g~~----~~fe~~f~~~~~l-~~~pG-F~~~~llr~~~--~~d~~~y~v~t~Weseeaf~aW~~S~~   72 (109)
T d2zdpa1           1 HMFMAENRLQLQKGSA----EETIERFYNRQGI-ETIEG-FQQMFVTKTLN--TEDTDEVKILTIWESEDSFNNWLNSDV   72 (109)
T ss_dssp             CCEEEEEEEEECTTCH----HHHHHTTSSCCSG-GGSTT-EEEEEEEEECS--CCSSEEEEEEEEESCHHHHHHHHTSHH
T ss_pred             CEEEEEEEEEeCCCcH----HHHHHHHhcccch-hcCCC-cceEEEEecCC--CCCCeEEEEEEEECCHHHHHHHHcCHH
Confidence            4666667777777554    3333333   233 56899 87777655322  234 46889999999999999999999


Q ss_pred             HHHHHH
Q 022676          263 YKEMWS  268 (293)
Q Consensus       263 H~~~~~  268 (293)
                      |+++.+
T Consensus        73 Fr~aH~   78 (109)
T d2zdpa1          73 FKEAHK   78 (109)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            998764

>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: Atu0297-like
domain: Hypothetical protein Atu0297
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.46  E-value=0.8  Score=33.11  Aligned_cols=70  Identities=16%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             EEEEecCCCCCChHHHHHHHHHHhhhhcCcceeeEEeeccCCC-CCCCceEEEEEEeCCHHHHHhhcCChhHHHHH
Q 022676          193 LLISFIQSAFGGPAEDALESLKRLTAEFPSLIVQSTQGSNFNL-SSEIYTHAVVIRLRSVEAFEMFVGSSDYKEMW  267 (293)
Q Consensus       193 Vl~kFk~~~s~e~i~~l~~~l~~Lk~~iPg~I~~~t~G~N~Sp-~~kGythafv~~F~s~eald~Y~~hp~H~~~~  267 (293)
                      +.++.++   ++..++=.+....+-.+..|  .=+..|.+... .........++.|+|.++..++..+|+++++.
T Consensus         8 ~~~~i~d---~e~~~~Y~~~~~~~~~~~GG--~~l~rg~~~~~~EG~~~~~~viieFps~e~A~~~~~SpeYq~~~   78 (95)
T d2fiua1           8 AQVDVRD---SERYKDYVSTAKPAFERFGA--NFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAA   78 (95)
T ss_dssp             EEEEESC---HHHHHHHHHHHHHHHHHTTC--EEEEESCCEEEEESCCCSEEEEEEESSHHHHHHHHHSHHHHHHH
T ss_pred             EEEEECC---HHHHHHHHHHHHHHHHHcCC--EEEEECCceEEecCCCCceEEEEEcCCHHHHHHHHCCHHHHHHH
Confidence            3445543   45555556666666666666  33344444322 22334556789999999999999999998743

>d1xbwa_ d.58.4.5 (A:) Hypothetical protein IsdG {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein IsdG
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.44  E-value=0.55  Score=35.31  Aligned_cols=72  Identities=7%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             EEEEecCCCCHHHHHHHHHHHHhhhhcCCceEEEEEeecCCCCCCCccEEEEEEECCHHHHHhhccCcchHHHHH
Q 022676           78 CLLKAKKDLSEEEEKDMLDYLYTSQYQMGGIVAISLGRISNENVENYTHGVFMRFQRKEHLVKFYENPFYSKVLK  152 (293)
Q Consensus        78 VlfK~K~~~s~e~~~~~~~~L~~L~~~IPgv~~i~~G~~~s~~~~gythaL~s~F~s~edL~~Y~~HP~H~~vv~  152 (293)
                      =-|+++++..++-++.+.+. ..| ...||-+.+++=+.... .+...+..+++.+|+||++++...++|++.-+
T Consensus         9 N~~~V~~g~~~~fe~rf~~r-~~l-~~~pGF~~~~lLr~~~~-~~~~~y~v~T~W~s~e~F~aW~~S~aF~~aH~   80 (109)
T d1xbwa_           9 NRLTLTKGTAKDIIERFYTR-HGI-ETLEGFDGMFVTQTLEQ-EDFDEVKILTVWKSKQAFTDWLKSDVFKAAHK   80 (109)
T ss_dssp             EEEEEETTCHHHHHHTTSSC-TTG-GGC-CEEEEEEEEESSC-SSEEEEEEEEEESSHHHHHHHHTSHHHHHHHH
T ss_pred             EEEEeCCChHHHHHHHHhcc-CCc-ccCCCcccEEEEECCCC-CCcEEEEEEEEECCHHHHHHHHcCHHHHHHHh
Confidence            34666666655555555443 334 66999999998765542 23346889999999999999999999887543

>d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Dimeric alpha+beta barrel
family: PG130-like
domain: Hypothetical protein BC2969
species: Bacillus cereus [TaxId: 1396]

Probab=84.99  E-value=0.72  Score=34.44  Aligned_cols=75  Identities=12%  Similarity=0.052  Sum_probs=51.4

Q ss_pred             cceeEEEEEEecCCCCCChHHHHHHHH--HHhhhhcCcceeeEEeeccCCCCCCCc-eEEEEEEeCCHHHHHhhcCChhH
Q 022676          187 FGVEFVLLISFIQSAFGGPAEDALESL--KRLTAEFPSLIVQSTQGSNFNLSSEIY-THAVVIRLRSVEAFEMFVGSSDY  263 (293)
Q Consensus       187 ~~i~HIVl~kFk~~~s~e~i~~l~~~l--~~Lk~~iPg~I~~~t~G~N~Sp~~kGy-thafv~~F~s~eald~Y~~hp~H  263 (293)
                      +||-=|..|+++++..    +++.+.+  .+.-+++|| -++++.=...  ..+++ .+..++..+|++++++|..+|+|
T Consensus         2 ~M~Vv~n~~~v~~g~~----~~~~~rf~~~~~le~~pG-F~~~ellr~~--~~~~~~~~~v~t~Wedeeaf~aW~~S~~f   74 (108)
T d1tz0a_           2 YMFIETKTFTVKEGTS----NIVVERFTGEGIIEKFEG-FIDLSVLVKK--VRRGDEEVVVMIRWESEEAWKNWETSEEH   74 (108)
T ss_dssp             CCEEEEEEEEECTTCH----HHHHHHTCSCCSGGGBTT-EEEEEEEECC--CSSSSEEEEEEEEESCHHHHHHHHTCSCC
T ss_pred             eEEEEEEEEEeCCCCH----HHHHHHhccccchhhccc-ceeEEEEeCC--CCCCCeEEEEEEEECCHHHHHHHHcChHH
Confidence            5766666777777553    4444444  334467899 7777743322  22444 47889999999999999999999


Q ss_pred             HHHHH
Q 022676          264 KEMWS  268 (293)
Q Consensus       264 ~~~~~  268 (293)
                      +++.+
T Consensus        75 ~~ah~   79 (108)
T d1tz0a_          75 LAGHR   79 (108)
T ss_dssp             CGGGS
T ss_pred             HHHHH
Confidence            87554