Citrus Sinensis ID: 022682

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MATTRLTLPSTSRYILPFSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGIDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSASITAS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEcccccccccccEEEccccccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccEEEEEEccccccccccEEEEccccccccccEEEEEccEEEcccEEccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccHHHcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mattrltlpstsryilpfscssfkTVRYLsnsgfntgenrsvysdigqrksaapikfkASAAASDSLMITAKTevgrgidvSSLLANVTRAALKflrprpsvnptssnsHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVgsknikekssqipasnlfglfylktppkwvemgsvsqaqSRIGHAVMMVLQVEVLEKfnsipvvtsldLVCFAGAALLSSACIFLLSRLSASITAS
Flexible Loop (DISEMBL)
mattrltlpstsryilpfscssFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGIDVSSLLANVTRAALKflrprpsvnptssnshiQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSASITAS
Low Complexity Region (SEG)
MATTRLTLPSTSRYILPFSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRksaapikfkasaaasDSLMITAKTEVGRGIDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSASITAS
Disordered region (IsUnstruct)
***********SRYILPFSCSSFKTVRYLSNSGFNT******************************LMITAKTEVGRGIDVSSLLANVTRAALKFLR************HIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRL*******
Disordered Region (DISOPRED)
******************************************************************L*********************************************RFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIK**********LFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFL***********
Disordered Region (DISEMBL)
MATTRLTLPSTSRYILPFSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGIDVSSLLANVTRAALKFLRPRP********SHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSASITAS
Disordered Region (DISPRO)
****RLTLPSTSRYILPFSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGIDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLS******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATTRLTLPSTSRYILPFSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGIDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSASITAS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224137266	298	predicted protein [Populus trichocarpa]	0.972	0.956	0.575	9e-82
255538516	295	conserved hypothetical protein [Ricinus	0.959	0.952	0.554	4e-76
225458430	294	PREDICTED: uncharacterized protein LOC10	0.904	0.901	0.532	3e-73
302142416	292	unnamed protein product [Vitis vinifera]	0.890	0.893	0.531	8e-73
388503478	292	unknown [Lotus japonicus]	0.965	0.969	0.513	2e-72
356577169	292	PREDICTED: uncharacterized protein LOC10	0.880	0.883	0.522	1e-70
357474975	292	hypothetical protein MTR_4g082590 [Medic	0.860	0.863	0.505	1e-61
242038191	311	hypothetical protein SORBIDRAFT_01g00866	0.597	0.562	0.488	1e-43
115455231	344	Os03g0739700 [Oryza sativa Japonica Grou	0.593	0.505	0.502	1e-42
168061664	475	predicted protein [Physcomitrella patens	0.607	0.374	0.431	2e-41

>gi|224137266|ref|XP_002327083.1| predicted protein [Populus trichocarpa] gi|222835398|gb|EEE73833.1| predicted protein [Populus trichocarpa]

 Score =  309 bits (792), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 168/292 (57%), Positives = 210/292 (71%), Gaps = 7/292 (2%)

Query: 1   MATTRLTLPSTS-RYILPFSCSS--FKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKF 57
           M+TTRL   S   R++ P S +S  F TV+    +    GE + V  D G  K  + +  
Sbjct: 1   MSTTRLLRSSKPLRHVGPPSATSSPFSTVKCAGKATGLNGE-KMVSGDHGDHKRKSTVAV 59

Query: 58  KASAAASD-SLMITAKTEVGRG-IDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFI 115
           KAS A S  SL+      V RG ID++SLLA V+ A LK LRP P+         +Q+ I
Sbjct: 60  KASVATSQGSLLTVEPPRVERGLIDLASLLATVSNALLKVLRP-PASKSKQWKFQVQKLI 118

Query: 116 ERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEA 175
           E+ IIDCRFFT FAVAGSLLGS LCFVEGCFL+L+SY ++FN+LS+ ++Q  ++HL+IEA
Sbjct: 119 EKAIIDCRFFTLFAVAGSLLGSTLCFVEGCFLILESYFQYFNTLSRVSDQGHLVHLLIEA 178

Query: 176 IDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQA 235
           ID FLVGTA+LIFGVGLY MFVGSKN K+++  +P SNLFGLF LK+ P WVEM SVSQA
Sbjct: 179 IDSFLVGTAMLIFGVGLYVMFVGSKNPKDEALSLPDSNLFGLFSLKSLPTWVEMRSVSQA 238

Query: 236 QSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLS 287
           +S+IGHA+MM+LQV +LEKF +IP+ TSLDL CFAGA + SSACIFLLSRLS
Sbjct: 239 KSKIGHAIMMILQVGMLEKFKNIPLATSLDLACFAGAVMFSSACIFLLSRLS 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538516|ref|XP_002510323.1| conserved hypothetical protein [Ricinus communis] gi|223551024|gb|EEF52510.1| conserved hypothetical protein [Ricinus communis]

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/292 (55%), Positives = 202/292 (69%), Gaps = 11/292 (3%)

Query: 1   MATTRLTLPSTS--RYILP--FSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIK 56
           M TTR+ LPS     ++ P   + SS  TV+ +  +    GE      D  ++K    I 
Sbjct: 1   MTTTRM-LPSYRPMHHVHPPGLASSSVSTVKCIGKTSGLGGEKMVSSGDCDKKK--PKIA 57

Query: 57  FKASAAASDSLMITAKTEVGRG-IDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFI 115
            KAS A + SL ITA+  V RG ID++SLLA V  A +K LRP  +V         Q  +
Sbjct: 58  VKASVATTKSL-ITAEQVVDRGLIDLASLLAIVGNALVKVLRP--AVKRRQWKLQAQMLL 114

Query: 116 ERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEA 175
           E+ ++DCRFFT  AV GSLL S+LCFVEGCFL+L+SY  +F+SLS  ++Q  I+ L+IEA
Sbjct: 115 EKAVLDCRFFTLLAVGGSLLSSVLCFVEGCFLILESYFHYFSSLSHSSDQGHIVQLLIEA 174

Query: 176 IDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQA 235
           IDM+LVGTA+LIFGVGLYA+FVGSK  K     +P SNLFGLFYLKT P WV++ SVSQA
Sbjct: 175 IDMYLVGTAMLIFGVGLYAIFVGSKGSKGNGQWLPESNLFGLFYLKTLPTWVQVESVSQA 234

Query: 236 QSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLS 287
           +SRIGHAVMM+LQV +LEKF +IPVVTSLDL CFAGA + SSACIFLL +LS
Sbjct: 235 KSRIGHAVMMILQVGLLEKFKNIPVVTSLDLACFAGAIMFSSACIFLLLKLS 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458430|ref|XP_002281932.1| PREDICTED: uncharacterized protein LOC100245440 [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/276 (53%), Positives = 200/276 (72%), Gaps = 11/276 (3%)

Query: 18  FSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGR 77
            S S+  ++R LS +G  TG+   + S  G R+S   +  KAS AAS+S+ IT+  +   
Sbjct: 24  LSPSTSTSLRCLSKAGM-TGDK--ILSGDGNRRSM--VALKASVAASESV-ITSDPQANG 77

Query: 78  GIDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGS 137
           G  ++SLLA+   A LK +R   +VN       +Q F+ER+I++CRFFT FAVAGSL+GS
Sbjct: 78  GESLASLLASTANAVLKVVRQ--TVNSKPPKLQVQMFLERIIVNCRFFTLFAVAGSLIGS 135

Query: 138 ILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFV 197
           +LCF+EGCF++L+SY ++F++L+Q ++Q  +M L+ EAIDMFL+GT +L+FG+GL+ MFV
Sbjct: 136 VLCFIEGCFMILESYFQYFHTLAQSSDQGHVMKLLFEAIDMFLLGTVMLVFGMGLHVMFV 195

Query: 198 GSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNS 257
           GSK ++ K   +  SNLFGLF L+T P WV + SVSQA+SRIGHA+MM+LQV VLEKF S
Sbjct: 196 GSKTMQGKGQWLSDSNLFGLFSLRTIPTWVRIQSVSQAKSRIGHAIMMILQVGVLEKFQS 255

Query: 258 IPVVTSLDLVCFAGAALLSSACIFLLSRLSASITAS 293
           IP+ T LDL C AGA L+SSAC+FLLSRL   ITAS
Sbjct: 256 IPLATGLDLACAAGAILVSSACVFLLSRL---ITAS 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142416|emb|CBI19619.3| unnamed protein product [Vitis vinifera]

 Score =  279 bits (714), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 143/269 (53%), Positives = 196/269 (72%), Gaps = 8/269 (2%)

Query: 18  FSCSSFKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGR 77
            S S+  ++R LS +G  TG+   + S  G R+S   +  KAS AAS+S+ IT+  +   
Sbjct: 24  LSPSTSTSLRCLSKAGM-TGDK--ILSGDGNRRSM--VALKASVAASESV-ITSDPQANG 77

Query: 78  GIDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGS 137
           G  ++SLLA+   A LK +R   +VN       +Q F+ER+I++CRFFT FAVAGSL+GS
Sbjct: 78  GESLASLLASTANAVLKVVRQ--TVNSKPPKLQVQMFLERIIVNCRFFTLFAVAGSLIGS 135

Query: 138 ILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFV 197
           +LCF+EGCF++L+SY ++F++L+Q ++Q  +M L+ EAIDMFL+GT +L+FG+GL+ MFV
Sbjct: 136 VLCFIEGCFMILESYFQYFHTLAQSSDQGHVMKLLFEAIDMFLLGTVMLVFGMGLHVMFV 195

Query: 198 GSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNS 257
           GSK ++ K   +  SNLFGLF L+T P WV + SVSQA+SRIGHA+MM+LQV VLEKF S
Sbjct: 196 GSKTMQGKGQWLSDSNLFGLFSLRTIPTWVRIQSVSQAKSRIGHAIMMILQVGVLEKFQS 255

Query: 258 IPVVTSLDLVCFAGAALLSSACIFLLSRL 286
           IP+ T LDL C AGA L+SSAC+FLLSRL
Sbjct: 256 IPLATGLDLACAAGAILVSSACVFLLSRL 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503478|gb|AFK39805.1| unknown [Lotus japonicus]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/294 (51%), Positives = 198/294 (67%), Gaps = 11/294 (3%)

Query: 1   MATTRLTLPSTSR-YILPFSCSS---FKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIK 56
           MATTRL L  TSR + LP + SS    K VRY S +  N   +R + S  G+RK   PI+
Sbjct: 1   MATTRLVLQKTSRPFQLPLTPSSSLFTKCVRYQSKAKLNG--DRVIVSGKGERKPVGPIQ 58

Query: 57  FKASAAASDSLMITAKTEVGRG-IDVSSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFI 115
             AS A  + +  +    +G+  I +++ +A V  A L  LR    +     N   Q  I
Sbjct: 59  --ASVATINHITTSEPVVIGKWLIGLAAFIARVRNAMLVLLRRSVVIRVKKWNLQPQMLI 116

Query: 116 ERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQK-ANQAPIMHLVIE 174
           E  IIDCRFFT FAV G+LLGS+LCF+EGC L+++SY ++F  LS++  +Q  ++HL+IE
Sbjct: 117 ETAIIDCRFFTLFAVLGTLLGSVLCFLEGCLLVIESYAQYFQMLSKRLVDQGHLVHLLIE 176

Query: 175 AIDMFLVGTALLIFGVGLYAMFVGSKNI-KEKSSQIPASNLFGLFYLKTPPKWVEMGSVS 233
           AIDMFL+GTALL+FGVGLY MFVGS+   KEK      SNL GLF++++PP+WV M S+ 
Sbjct: 177 AIDMFLLGTALLVFGVGLYVMFVGSRTTNKEKEPWHCESNLLGLFHMQSPPRWVGMHSIE 236

Query: 234 QAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLS 287
           QA+S+IGHAVMM+LQV +LEKF  IP+VTSLDL CFA A L SSACIF+LS+L 
Sbjct: 237 QAKSKIGHAVMMILQVGLLEKFKDIPLVTSLDLACFASAVLTSSACIFVLSKLQ 290

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577169|ref|XP_003556700.1| PREDICTED: uncharacterized protein LOC100777990 [Glycine max]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/266 (52%), Positives = 188/266 (70%), Gaps = 8/266 (3%)

Query: 23  FKTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGI-DV 81
            K VRY S +  N   + ++ S  G+RK    +K   +  A+ + + T+K  + +G+ D+
Sbjct: 31  MKCVRYQSMASLNE-NHHNIGSVKGERKPVGAVK---ATIATTNHITTSKPVIQQGLSDL 86

Query: 82  SSLLANVTRAALKFLRPRPSVNPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSILCF 141
           ++L+A++  A L FLR      P   N   Q  IE+ IIDCRFFT FAVAGSL+GS+LCF
Sbjct: 87  ATLIASIRNAVLVFLRTFVKRKP--RNLRPQMLIEKAIIDCRFFTLFAVAGSLIGSVLCF 144

Query: 142 VEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKN 201
           VEGC L+++SY  +F+ LSQ+ +Q  ++HL+IEAID FL+GTALLIFGVG+Y MFVGS  
Sbjct: 145 VEGCLLVIESYAHYFHMLSQRLDQGHLVHLLIEAIDSFLMGTALLIFGVGIYVMFVGSST 204

Query: 202 I-KEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPV 260
             KE   Q+  SNL GLFY+K+PP+WV M S++QA+S+IGHAVMM+LQV +L+KF  IP+
Sbjct: 205 TSKETQPQLCGSNLLGLFYMKSPPRWVGMQSIAQAKSKIGHAVMMILQVGLLDKFKDIPL 264

Query: 261 VTSLDLVCFAGAALLSSACIFLLSRL 286
           VT LDL CFA A L SSACIF+LS+L
Sbjct: 265 VTGLDLACFAAAVLTSSACIFVLSKL 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474975|ref|XP_003607773.1| hypothetical protein MTR_4g082590 [Medicago truncatula] gi|355508828|gb|AES89970.1| hypothetical protein MTR_4g082590 [Medicago truncatula]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/271 (50%), Positives = 181/271 (66%), Gaps = 19/271 (7%)

Query: 24  KTVRYLSNSGFNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLMITAKTEVGRGIDVSS 83
           K VRY S +    G+N  V  +  +RK    +  KA+   +++L I+    V +G+  S 
Sbjct: 32  KCVRYQSLACLR-GDNIKVLPEKVERKPV--VVMKATMTTTNNLTISQPALVPQGL--SE 86

Query: 84  LLANVT---RAALKFLRPRPSV--NPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSI 138
           LLA +    R A+  +  R +V     + N H Q  IE+ I+DCRFFT FAVAGSLLGS+
Sbjct: 87  LLAEIVASIRNAMLVVLFRGAVIDRKITRNLHPQMLIEKAIMDCRFFTLFAVAGSLLGSV 146

Query: 139 LCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVG 198
           LCF+EGC L+++SY  + + LSQ  NQ  ++HL+IEAIDMFLVGTALL+FGVGLY MFVG
Sbjct: 147 LCFLEGCVLVIKSYAHYLHMLSQPLNQGHLVHLLIEAIDMFLVGTALLMFGVGLYVMFVG 206

Query: 199 SKNI-KEKSSQIPASNLFGLFY-LKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFN 256
           S    K+K S        GL Y +K+PP+WV M S+ QA+S+IGHAVMM+LQV ++EKFN
Sbjct: 207 SWTTGKQKESS-------GLLYIMKSPPRWVGMQSIEQAKSKIGHAVMMILQVGLIEKFN 259

Query: 257 SIPVVTSLDLVCFAGAALLSSACIFLLSRLS 287
            IP+VT LDL CFA A L SSA IF+LS+L+
Sbjct: 260 DIPMVTGLDLACFAAALLTSSATIFVLSKLN 290

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242038191|ref|XP_002466490.1| hypothetical protein SORBIDRAFT_01g008660 [Sorghum bicolor] gi|241920344|gb|EER93488.1| hypothetical protein SORBIDRAFT_01g008660 [Sorghum bicolor]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 130/176 (73%), Gaps = 1/176 (0%)

Query: 111 IQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMH 170
           I+R I +VII+C+ FT   VAGSL+GS+  F EGC ++++S+   F+++S   +Q   + 
Sbjct: 125 IERMIHQVIINCQSFTLIGVAGSLVGSVPLFAEGCAVVMKSFFMRFHAMSHTVDQGETIR 184

Query: 171 LVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMG 230
           L+IEA+DMFL+GTALL FG+G+Y MF GS++I++++  +  S+L G F LK   +   + 
Sbjct: 185 LLIEALDMFLIGTALLTFGMGMYTMFYGSQSIQQQARHVDTSHL-GAFNLKKLKEGARIR 243

Query: 231 SVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRL 286
           SV+QA++RI HA++++LQV VLEKF S+P++T LD+ CF GA L SSA +FLLS+L
Sbjct: 244 SVTQAKTRISHAILLLLQVGVLEKFKSVPLLTGLDMACFGGAVLASSASVFLLSKL 299

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455231|ref|NP_001051216.1| Os03g0739700 [Oryza sativa Japonica Group] gi|31126772|gb|AAP44691.1| unknown protein [Oryza sativa Japonica Group] gi|108710985|gb|ABF98780.1| expressed protein [Oryza sativa Japonica Group] gi|113549687|dbj|BAF13130.1| Os03g0739700 [Oryza sativa Japonica Group] gi|125545662|gb|EAY91801.1| hypothetical protein OsI_13445 [Oryza sativa Indica Group] gi|125587860|gb|EAZ28524.1| hypothetical protein OsJ_12504 [Oryza sativa Japonica Group] gi|215692815|dbj|BAG88259.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/175 (50%), Positives = 128/175 (73%), Gaps = 1/175 (0%)

Query: 115 IERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIE 174
           I + ++ C+ FT   VAGSL+GS+ CF+EGC  +++S+   F +L+Q  +QA I+ L+IE
Sbjct: 156 IHQGVVRCQSFTLIGVAGSLVGSVPCFLEGCGAVVRSFFVQFRALTQTIDQAEIIKLLIE 215

Query: 175 AIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQ 234
           AIDMFL+GTALL FG+G+Y MF GS++I+    Q   S+L G F LK   +   + S++Q
Sbjct: 216 AIDMFLIGTALLTFGMGMYIMFYGSRSIQNPGMQGDNSHL-GSFNLKKLKEGARIQSITQ 274

Query: 235 AQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSAS 289
           A++RIGHA++++LQ  VLEKF S+P+VT +D+ CFAGA L SSA +FLLS+LS +
Sbjct: 275 AKTRIGHAILLLLQAGVLEKFKSVPLVTGIDMACFAGAVLASSAGVFLLSKLSTT 329

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168061664|ref|XP_001782807.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665709|gb|EDQ52384.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 128/183 (69%), Gaps = 5/183 (2%)

Query: 112 QRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHL 171
           +  IERVI +CRFFT  AV GSL+GS+LCF++G   + QS+V++F +  Q  + + ++ L
Sbjct: 288 EAIIERVIFNCRFFTLMAVVGSLVGSVLCFLKGTLFVTQSFVEYFQAAWQGLSTSKVVFL 347

Query: 172 VIEAIDMFLVGTALLIFGVGLYAMFVGSKNI-----KEKSSQIPASNLFGLFYLKTPPKW 226
           ++EA+D++L+GT +LIFG+GLY +FV +  +     +E       SNLFGLF +K  PKW
Sbjct: 348 LVEAVDVYLMGTVMLIFGMGLYELFVDTLEVSGAECEEVREPACGSNLFGLFQMKERPKW 407

Query: 227 VEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRL 286
           +E+ S+ + ++++GH ++M+L V + EK   +P+   LDL+CF+ + LLSS C+FLLS+L
Sbjct: 408 LEIRSLDELKTKLGHVIVMILLVGMFEKSKKVPINNGLDLLCFSASILLSSGCLFLLSKL 467

Query: 287 SAS 289
            ++
Sbjct: 468 HST 470

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2140411	273	AT4G19390 "AT4G19390" [Arabido	0.617	0.663	0.384	1e-36
TAIR|locus:2173239	262	AT5G13720 [Arabidopsis thalian	0.587	0.656	0.348	9.8e-32
UNIPROTKB|Q5HU78	168	CJE1166 "Membrane protein, put	0.546	0.952	0.223	2.3e-08
TIGR_CMR|CJE_1166	168	CJE_1166 "membrane protein, pu	0.546	0.952	0.223	2.3e-08
UNIPROTKB|Q484I7	164	CPS_1797 "Putative membrane pr	0.525	0.939	0.247	1.4e-07
TIGR_CMR|CPS_1797	164	CPS_1797 "putative membrane pr	0.525	0.939	0.247	1.4e-07

TAIR|locus:2140411 AT4G19390 "AT4G19390" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 73/190 (38%), Positives = 125/190 (65%)

Query:   103 NPTSSNSHIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQK 162
             N T+    ++  IE+VI  CRF TF    GSLLGS+LCF++GC  ++ S++++       
Sbjct:    89 NSTNRFEALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------S 142

Query:   163 ANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASN---LFGLFY 219
              N+  ++ L++EAID++L+GT +L+FG+GLY +F+ + +  E  +    SN   LFG+F 
Sbjct:   143 VNRGKVIFLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFT 202

Query:   220 LKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSAC 279
             LK  P+W+E+ SVS+ ++++GH ++M+L + + +K   + + +  DL+C + +   SSAC
Sbjct:   203 LKERPQWLEVKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSAC 262

Query:   280 IFLLSRLSAS 289
             +FLLSRL+ S
Sbjct:   263 LFLLSRLNGS 272

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2173239 AT5G13720 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 61/175 (34%), Positives = 116/175 (66%)

Query:   115 IERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIE 174
             +ER+I D RF    AV GSL GS+LCF+ GC  ++++Y  ++ + S+  +   ++  ++E
Sbjct:    83 VERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCSKGIHTGQMVLRLVE 142

Query:   175 AIDMFLVGTALLIFGVGLYAMFVGSK--NIKEKSSQ-IPASNLFGLFYLKTPPKWVEMGS 231
             AID++L GT +LIF +GLY +F+     ++  +S + + +S+LFG+F +K  PKW+++ S
Sbjct:   143 AIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGMFAMKERPKWMKISS 202

Query:   232 VSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRL 286
             + + ++++GH ++M+L V++ E+   + + T LDL+ ++    LSSA +++L  L
Sbjct:   203 LDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNL 257

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q5HU78 CJE1166 "Membrane protein, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 132 (51.5 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 40/179 (22%), Positives = 83/179 (46%)

Query:   111 IQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQ----SYVKFFNSLSQKANQA 166
             +++  E +++  R  T   V   L+G+ + F    + +L+    +Y  FF++ S      
Sbjct:     2 LEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIFYTYNYFFDAGSNVDLHE 61

Query:   167 PIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKW 226
              ++ L+I A+D++L+   L IF  G+Y +F+    I+E             F      K 
Sbjct:    62 DVVALIIGAVDLYLMALVLFIFSFGVYELFISE--IEE-------------FKQTKQSKV 106

Query:   227 VEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSR 285
             +E+ S+ Q + ++   ++MVL V   ++   +   T +D+   AG+ L     ++ L +
Sbjct:   107 LEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGLYFLHK 165

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1166 CJE_1166 "membrane protein, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 132 (51.5 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 40/179 (22%), Positives = 83/179 (46%)

Query:   111 IQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQ----SYVKFFNSLSQKANQA 166
             +++  E +++  R  T   V   L+G+ + F    + +L+    +Y  FF++ S      
Sbjct:     2 LEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIFYTYNYFFDAGSNVDLHE 61

Query:   167 PIMHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKW 226
              ++ L+I A+D++L+   L IF  G+Y +F+    I+E             F      K 
Sbjct:    62 DVVALIIGAVDLYLMALVLFIFSFGVYELFISE--IEE-------------FKQTKQSKV 106

Query:   227 VEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSR 285
             +E+ S+ Q + ++   ++MVL V   ++   +   T +D+   AG+ L     ++ L +
Sbjct:   107 LEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGLYFLHK 165

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q484I7 CPS_1797 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 43/174 (24%), Positives = 83/174 (47%)

Query:   112 QRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGC---FLLLQSYVKFFNSLSQKANQAPI 168
             +RF E ++   R    F V   ++ +    + GC   F LLQ    +  + S   ++  +
Sbjct:     3 KRF-ESLLWSSRLLLLFGVVCCVITAATLILLGCVEVFHLLQGMFSYLITHSSDVSRDNL 61

Query:   169 MHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVE 228
             + +VIE +D FL+ + L IF  GLY +F+ S  I+E       SN       K   K  +
Sbjct:    62 VLMVIEILDTFLLSSILFIFAFGLYELFISS--IEE-------SN-------KHQSKAFQ 105

Query:   229 MGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFL 282
             + S+ + ++++G  ++M+L +++      I     ++++  A   LL S  ++L
Sbjct:   106 ISSIDELKAKLGKVIVMILVIKLFSYLVEIKPQNIVEILYMAIIVLLVSVSLWL 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1797 CPS_1797 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 43/174 (24%), Positives = 83/174 (47%)

Query:   112 QRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGC---FLLLQSYVKFFNSLSQKANQAPI 168
             +RF E ++   R    F V   ++ +    + GC   F LLQ    +  + S   ++  +
Sbjct:     3 KRF-ESLLWSSRLLLLFGVVCCVITAATLILLGCVEVFHLLQGMFSYLITHSSDVSRDNL 61

Query:   169 MHLVIEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVE 228
             + +VIE +D FL+ + L IF  GLY +F+ S  I+E       SN       K   K  +
Sbjct:    62 VLMVIEILDTFLLSSILFIFAFGLYELFISS--IEE-------SN-------KHQSKAFQ 105

Query:   229 MGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFL 282
             + S+ + ++++G  ++M+L +++      I     ++++  A   LL S  ++L
Sbjct:   106 ISSIDELKAKLGKVIVMILVIKLFSYLVEIKPQNIVEILYMAIIVLLVSVSLWL 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      293       278   0.00081  115 3  11 22  0.41    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.46u 0.12s 20.58t   Elapsed:  00:00:07
  Total cpu time:  20.46u 0.12s 20.58t   Elapsed:  00:00:07
  Start:  Fri May 10 12:01:08 2013   End:  Fri May 10 12:01:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam03350	124	pfam03350, UPF0114, Uncharacterized protein family	9e-26
COG2862	169	COG2862, COG2862, Predicted membrane protein [Func	2e-07

>gnl|CDD|217507 pfam03350, UPF0114, Uncharacterized protein family, UPF0114

 Score = 98.5 bits (246), Expect = 9e-26
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 15/138 (10%)

Query: 118 VIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAID 177
           +I   R+    AV G LLGS+L F++GC  L+  +++ F +     ++  ++  V+E ID
Sbjct: 1   LIFASRWLVLPAVIGLLLGSVLLFLKGCVELVHLFIETFRAHVFTIDETDLILAVLELID 60

Query: 178 MFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQS 237
           +FL+GT LLI G G Y +FV   +I E                   P+W+ + S+   + 
Sbjct: 61  LFLIGTLLLIVGFGGYELFVSKLDIAEHPDL---------------PEWLGIVSLDDLKQ 105

Query: 238 RIGHAVMMVLQVEVLEKF 255
           ++   ++++L V  L+ F
Sbjct: 106 KLAGVIVVILSVHFLKVF 123

Length = 124

>gnl|CDD|225417 COG2862, COG2862, Predicted membrane protein [Function unknown]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 32/179 (17%), Positives = 71/179 (39%), Gaps = 26/179 (14%)

Query: 113 RFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLV 172
           + IER+I   R+     V   L+ +++ F    F  +   +     + +      ++   
Sbjct: 6   KIIERLIFASRW-LLAPVYLGLIVALVLFAYKFFKEIWHLLPNLFDMGEND----LILAA 60

Query: 173 IEAIDMFLVGTALLIFGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSV 232
           +  +D+ LV   L++   G Y +FV   +I E                +  P W+ +  +
Sbjct: 61  LSLVDLLLVAGLLVMVSFGGYELFVSKLDIAE----------------EDKPSWLGIVDL 104

Query: 233 SQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCFAGAALLSSACIFLLSRLSASIT 291
           S  + ++  +++ +  V +L+ F +   ++   L+ F    L      F+LS L  +  
Sbjct: 105 SDLKQKLAASIVAISSVHLLKVFLNAKNLSDNKLMWFVIIHL-----TFVLSALYLAYK 158

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PRK05208	168	hypothetical protein; Provisional	100.0
TIGR00645	167	HI0507 conserved hypothetical transmembrane protei	100.0
PF03350	124	UPF0114: Uncharacterized protein family, UPF0114;	100.0
COG2862	169	Predicted membrane protein [Function unknown]	100.0

>PRK05208 hypothetical protein; Provisional

Probab=100.00  E-value=4.8e-38  Score=275.60  Aligned_cols=147  Identities=17%  Similarity=0.288  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHH
Q 022682          109 SHIQRFIERVIIDCRFFTFFAVAGSLLGSILCF-VEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLI  187 (293)
Q Consensus       109 ~~iE~~~E~~L~~sR~lvllaVi~sLl~SllLF-~~G~~~v~~~~~~~~~~~~~~~~~~~lIl~vIeaIDlfLIa~vLlI  187 (293)
                      +++|+.||+++|+|||++ +|||+||++|+.+| +.++.++++...+.+.     .++++++..++++||+||+|++|+|
T Consensus         3 ~~~e~~~E~~l~~sRwl~-~pv~~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lIDl~Lia~lLlI   76 (168)
T PRK05208          3 KRMERIIERLIFASRWLQ-APLYLGLSLALAVLVYKFFQELWHLLPHVFS-----LDESDLILVVLSLIDVVLVANLLVM   76 (168)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999995 99999999999999 8888888888777765     4688999999999999999999999


Q ss_pred             HhhcceeeceecCCccccCcCCCccccccccccCCCCcceeeCChhHHHHHHHHHHHHHHHHHHHHHhccCcccChhhHH
Q 022682          188 FGVGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLV  267 (293)
Q Consensus       188 f~~GlYELFIS~id~~~~~~~~~~s~l~g~f~l~~~P~WL~I~SlddLK~KL~~VIVmIL~V~fLe~fl~v~~~t~lDLL  267 (293)
                      |++|+||||||++|.++|+               ++|+||+++|+||||.||+++||||++|+|||+|++++..++.++.
T Consensus        77 v~~ggYElFISkid~~~~~---------------~~p~wL~~~~l~~LK~KL~~vIV~Is~V~llk~fl~~~~~~~~~~~  141 (168)
T PRK05208         77 VIFSGYENFVSRLDIDGHP---------------DEPEWLGKVDASSLKVKLAASIVAISSIHLLKTFMNADNYSDNKLM  141 (168)
T ss_pred             HHhhhHHHhhccCccccCC---------------CCCccceecCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence            9999999999999986553               6799999999999999999999999999999999999877776655


Q ss_pred             H-HHHHHHHH
Q 022682          268 C-FAGAALLS  276 (293)
Q Consensus       268 ~-~a~aIllv  276 (293)
                      | .+++...+
T Consensus       142 w~~~ihl~fv  151 (168)
T PRK05208        142 WQVIIHLTFV  151 (168)
T ss_pred             HHHHHHHHHH
Confidence            5 44555544

>TIGR00645 HI0507 conserved hypothetical transmembrane protein

Probab=100.00  E-value=1.6e-36  Score=265.70  Aligned_cols=155  Identities=12%  Similarity=0.275  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHh
Q 022682          111 IQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEG-CFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFG  189 (293)
Q Consensus       111 iE~~~E~~L~~sR~lvllaVi~sLl~SllLF~~G-~~~v~~~~~~~~~~~~~~~~~~~lIl~vIeaIDlfLIa~vLlIf~  189 (293)
                      +|+.||+++|+|||+ ++|||+||++|+.++... +.++++.+.+.     .+.++++++..++++||+||+|++|+||+
T Consensus         1 ~e~~~E~~l~~SRwl-l~pvy~gLi~a~~l~~~~f~~el~~~~~~~-----~~~~~~~~il~vl~lID~~Lia~lLlIv~   74 (167)
T TIGR00645         1 QENIIEKIIFASRWL-LAPIYLGLSLTLVILSYKFIKELWHLLINV-----NDMDENDLMLGVLNLVDVVMIAGLLVMVT   74 (167)
T ss_pred             ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999 899999999998864321 33444433322     23568899999999999999999999999


Q ss_pred             hcceeeceecCCccccCcCCCccccccccccCCCCcceeeCChhHHHHHHHHHHHHHHHHHHHHHhccCcccChhhHHHH
Q 022682          190 VGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPVVTSLDLVCF  269 (293)
Q Consensus       190 ~GlYELFIS~id~~~~~~~~~~s~l~g~f~l~~~P~WL~I~SlddLK~KL~~VIVmIL~V~fLe~fl~v~~~t~lDLL~~  269 (293)
                      +|+||||||++|.++++               ++|+||+++|+||||.||+++||||++|+|||+|++.+..++.+++|.
T Consensus        75 ~ggYElFISkid~~~~~---------------~~p~wL~~~~l~~LK~KL~~vIV~Is~I~lLk~fl~~~~~~~~~~~w~  139 (167)
T TIGR00645        75 IGGYEIFVSKLDTRNHP---------------EQPEWLSHVDATVLKVKVSMSIVAISSIHLLQTFMNASNMPENTMMWQ  139 (167)
T ss_pred             hccHhHhhccCccccCC---------------CCCCceeecCHHHHHHHHHHHHHHHhHHHHHHHHHhhhhCCHHHHHHH
Confidence            99999999999987654               679999999999999999999999999999999999987677776554


Q ss_pred             -HHHHHHH--HHHHHHHhhc
Q 022682          270 -AGAALLS--SACIFLLSRL  286 (293)
Q Consensus       270 -a~aIllv--a~aly~l~k~  286 (293)
                       ++++..+  ++.+-+.-|.
T Consensus       140 ~~ih~~fv~s~~~~a~~d~~  159 (167)
T TIGR00645       140 VLIHLGFVVSAIALAYTDKI  159 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence             4455444  3334444443

This conserved hypothetical protein with four predicted transmembrane regions is found in E. coli, Haemophilus influenzae, and Helicobacter pylori, among completed genomes. A similar protein from Aquifex aeolicus appears to share a central region of homology and a similar overall arrangement of hydrophobic stretches, and forms a bidirectional best hit with several members of the seed alignment. However, it is uncertain whether the observed similarity represents full-length homology and/or equivalent function, and so it is excluded from the seed and scores below the trusted cutoff.

>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes

Probab=100.00  E-value=6.1e-36  Score=249.66  Aligned_cols=124  Identities=31%  Similarity=0.679  Sum_probs=117.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHhhcceeece
Q 022682          118 VIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFGVGLYAMFV  197 (293)
Q Consensus       118 ~L~~sR~lvllaVi~sLl~SllLF~~G~~~v~~~~~~~~~~~~~~~~~~~lIl~vIeaIDlfLIa~vLlIf~~GlYELFI  197 (293)
                      ++|+|||++++|++|+++|+++||++|++++++.+.++++....+.++++++..++|++|+||+|++++||++|+|||||
T Consensus         1 ~l~~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~~g~YelFI   80 (124)
T PF03350_consen    1 LLFASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFAFGLYELFI   80 (124)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeeE
Confidence            47999999999999999999999999999999999999996556778999999999999999999999999999999999


Q ss_pred             ecCCccccCcCCCccccccccccCCCCcceeeCChhHHHHHHHHHHHHHHHHHHHHHhc
Q 022682          198 GSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFN  256 (293)
Q Consensus       198 S~id~~~~~~~~~~s~l~g~f~l~~~P~WL~I~SlddLK~KL~~VIVmIL~V~fLe~fl  256 (293)
                      |++|.++++               ++|+||+++|+||||+||+++||||++|+|||+|+
T Consensus        81 s~~~~~~~~---------------~~p~wL~i~s~~~LK~KL~~vIV~Il~V~~l~~~~  124 (124)
T PF03350_consen   81 SKLDIAEHD---------------DRPKWLGIRSLDDLKLKLGSVIVMILVVHFLKKFI  124 (124)
T ss_pred             ecccccccC---------------cccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999987764               67999999999999999999999999999999874

>COG2862 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=249.57  Aligned_cols=156  Identities=17%  Similarity=0.338  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHh
Q 022682          110 HIQRFIERVIIDCRFFTFFAVAGSLLGSILCFVEGCFLLLQSYVKFFNSLSQKANQAPIMHLVIEAIDMFLVGTALLIFG  189 (293)
Q Consensus       110 ~iE~~~E~~L~~sR~lvllaVi~sLl~SllLF~~G~~~v~~~~~~~~~~~~~~~~~~~lIl~vIeaIDlfLIa~vLlIf~  189 (293)
                      +.|+++|+++|+|||+ ++|||.+++.++.+|.++   .++.+++.+.+.. +.++.+++..++++||++|+|++++|++
T Consensus         3 ~~e~~~e~~i~~SRwl-l~pv~~gLi~al~lf~~~---f~~~i~~~~~~~~-~~~e~~lil~~l~liDl~Lva~lLvmv~   77 (169)
T COG2862           3 MLEKIIERLIFASRWL-LAPVYLGLIVALVLFAYK---FFKEIWHLLPNLF-DMGENDLILAALSLVDLLLVAGLLVMVS   77 (169)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHcccc-ccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999977 789999999999999988   3444444444432 3459999999999999999999999999


Q ss_pred             hcceeeceecCCccccCcCCCccccccccccCCCCcceeeCChhHHHHHHHHHHHHHHHHHHHHHhccCcc-cChhhHHH
Q 022682          190 VGLYAMFVGSKNIKEKSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQVEVLEKFNSIPV-VTSLDLVC  268 (293)
Q Consensus       190 ~GlYELFIS~id~~~~~~~~~~s~l~g~f~l~~~P~WL~I~SlddLK~KL~~VIVmIL~V~fLe~fl~v~~-~t~lDLL~  268 (293)
                      +|+||||||++|.++ +               ++|+||++.|++|||+|++++||+|++||||+.|++.+. .++.++++
T Consensus        78 ~g~YelFVskLd~~~-~---------------~~~~wL~~~d~~~LK~Kl~~sIV~IssV~~L~~fl~~~~~~~~~~~~~  141 (169)
T COG2862          78 FGGYELFVSKLDIAE-E---------------DKPSWLGIVDLSDLKQKLAASIVAISSVHLLKVFLNAKNLSDNKLMWF  141 (169)
T ss_pred             HhhHHHHHhhccccc-c---------------cccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHhchhhCCchhHHHH
Confidence            999999999999776 2               679999999999999999999999999999999999987 67899999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 022682          269 FAGAALLSSACIFLLSRL  286 (293)
Q Consensus       269 ~a~aIllva~aly~l~k~  286 (293)
                      +.+++..++-+.++.++-
T Consensus       142 ~~ihl~fv~sa~~~~~~d  159 (169)
T COG2862         142 VIIHLTFVLSALYLAYKD  159 (169)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999998888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 48/229 (20%)

Query: 34  FNTGENRSVYSDIGQRKSAAPIKFKASAAASDSLM-ITAKTEVGRGIDVSSLLANVTRAA 92
           F TGE++  Y DI      A +         D    I +K E+     +      V+   
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTL 65

Query: 93  LKF--LRPRPSVNPTSSNSHIQRFIERVI-IDCRFFTFFAVAGSLLGSILCFVEGCFLLL 149
             F  L  +           +Q+F+E V+ I+ +F         L+  I        ++ 
Sbjct: 66  RLFWTLLSKQ-------EEMVQKFVEEVLRINYKF---------LMSPIKTEQRQPSMMT 109

Query: 150 QSYVKFFNSLSQKANQAPIMHLVIEAIDMFL-VGTALLIF----GVGLYAMFVGS-KNI- 202
           + Y++  + L    NQ       +  +  +L +  ALL       V +  +  GS K   
Sbjct: 110 RMYIEQRDRL-YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWV 166

Query: 203 -KE--KSSQIPASNLFGLFYLKTPPKWVEMGSVSQAQSRIGHAVMMVLQ 248
             +   S ++     F +F       W+ + + +  ++     V+ +LQ
Sbjct: 167 ALDVCLSYKVQCKMDFKIF-------WLNLKNCNSPET-----VLEMLQ 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00