Citrus Sinensis ID: 022710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEEEEEEEEcccccEEEEEEEccccccccccccccccEEEEEEcccccccEEEEcccccccccccEEEEEEEEccccHHHHHHccccccEEEEEccccccEEcccccccccccEEEEEEEcccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHccEEEccccHcccccHHHHHHHHHHHHHccccccccEEccccEEEEEEccccccEEEEEccccccccccccEEEEEEEccccHHHHHHHcccccEEEEEcccccEEEEcccccccccccEEEEEccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHccccEEEEEEccccccccccccEHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHccccHHHHHHcc
Coil and Loop (DISEMBL)
malalspspslphahvsqtfppmsilrripllhlkPQRRRLATLAAAAVRqdttvwtptplaeispaaeslfhvsidisdapdiasshtraGQYLQLRVvdvgkptflaiasppsfasasGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGrgfavdriqppdeyptvLIFAtgsgispiRSLIesgfsskersdVRLYYGARNLKRMAYQDKFKewessgvkivpvlsqpdgnwsgetGYVQAAFSRAKkifnpqgtgvvlcGQKQMAEEVTSIVLAEGVSSEKILKNF
Flexible Loop (DISEMBL)
malalspspslphahvsqtfppMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLiesgfsskersdVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIvlaegvssekilknf
Low Complexity Region (SEG)
MALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQrrrlatlaaaavrQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIasppsfasasgafEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF
Disordered region (IsUnstruct)
**********************MSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHV******************QYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF*****SDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLA************
Disordered Region (DISOPRED)
*********************************LKP*RRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF
Disordered Region (DISEMBL)
*************AHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF
Disordered Region (DISPRO)
*****SPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
P43394	317	Fruit protein pKIWI502 OS	N/A	no	0.976	0.902	0.485	4e-76
Q8U2E4	292	Sulfhydrogenase 1 subunit	yes	no	0.679	0.681	0.276	1e-11
Q5QYQ8	408	Na(+)-translocating NADH-	yes	no	0.525	0.377	0.293	2e-09
A8GAC4	407	Na(+)-translocating NADH-	yes	no	0.522	0.375	0.259	2e-09
Q15YQ1	408	Na(+)-translocating NADH-	yes	no	0.525	0.377	0.293	8e-09
A1JNZ2	407	Na(+)-translocating NADH-	yes	no	0.515	0.371	0.285	3e-08
Q66DP5	329	CDP-6-deoxy-L-threo-D-gly	yes	no	0.723	0.644	0.248	4e-08
A5DQE4	294	NADH-cytochrome b5 reduct	N/A	no	0.597	0.595	0.252	4e-08
Q7WTJ2	353	Phenol hydroxylase P5 pro	yes	no	0.614	0.509	0.266	4e-08
Q66E01	407	Na(+)-translocating NADH-	no	no	0.522	0.375	0.271	4e-08

>sp|P43394|K502_ACTDE Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502 PE=2 SV=1

 Score =  285 bits (728), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 146/301 (48%), Positives = 203/301 (67%), Gaps = 15/301 (4%)

Query: 4   ALSPSPSLP-HAHVSQTFP---PMSILRRIPLLHLKPQRRRL----ATLAAAAVRQDTTV 55
           +LS  PSL  H+ +S   P   P++ LR  P L      R L    A L   A+RQDT +
Sbjct: 14  SLSRHPSLTLHSSLSHAPPHHRPVAFLRH-PTLRYHHHGRLLSVASAILQDTAIRQDTYI 72

Query: 56  WTPTPLAEISPAA-ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLA 109
           WTP P++ + PAA ESLF V +D+S +PD+  +    GQY+Q+R+ +       +P +  
Sbjct: 73  WTPVPISRVLPAAAESLFKVIVDLSRSPDLVYNFVSPGQYVQIRIPEAIVNPPPRPAYFY 132

Query: 110 IASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169
           IASPPS    +  FEFL++SV G+T+EVLC LK+GDVV+++Q++GRGF +++I PP++YP
Sbjct: 133 IASPPSLVKKNLEFEFLIRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYP 192

Query: 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVP 229
           TVLI  TG G+S  RS IE GF + +RSDVRLYYGA NL+ M YQ++FK+WE+SGV+++P
Sbjct: 193 TVLISVTGYGMSAGRSFIEEGFGANKRSDVRLYYGAENLETMGYQERFKDWEASGVRVIP 252

Query: 230 VLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           VLS+P  NW+G  GYVQ  + + K I +P+ TG VL G   M EE   I++A+GVS EKI
Sbjct: 253 VLSRPPPNWNGAVGYVQDVYLKDKPIADPRTTGAVLIGNPNMVEETRGILVAQGVSREKI 312

Query: 290 L 290
           L
Sbjct: 313 L 313

Actinidia deliciosa (taxid: 3627)

>sp|Q8U2E4|HYD1G_PYRFU Sulfhydrogenase 1 subunit gamma OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=hydG PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 18/217 (8%)

Query: 80  DAPDIASSHT-RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138
           + P++A   T + GQ++QL +  VG+      +SP       G FE  ++  AG    V+
Sbjct: 40  EDPELAEKWTFKPGQFVQLTIPGVGEVPISICSSP----MRKGFFELCIRK-AGRVTTVV 94

Query: 139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER-S 197
             LK GD V +    G GF VD  +  D    +L+ A G G +P+RS+      ++ +  
Sbjct: 95  HRLKPGDTVLVRGPYGNGFPVDEWEGMD----LLLIAAGLGTAPLRSVFLYAMDNRWKYG 150

Query: 198 DVRLYYGARNLKRMAYQDKFKEW----ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAK 253
           ++     AR  K + +  + +      E+  VKI+  +++ D NW G  G  Q     A 
Sbjct: 151 NITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTR-DPNWPGLKGRPQQFIVEAN 209

Query: 254 KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
              NP+ T V +CG  +M + V   ++  G   E I 
Sbjct: 210 T--NPKNTAVAICGPPRMYKSVFEALINYGYRPENIF 244

Part of a bifunctional enzyme complex that functions as an NADPH-dependent hydrogen-evolving hydrogenase with sulfur reducing activity. May play a role in hydrogen cycling during fermentative growth. Activity not exhibited with NAD. The beta and gamma subunits form the sulfur reducing component that catalyzes the cytoplasmic production of hydrogen sulfide in the presence of elemental sulfur. Not active in the presence of sodium sulfate, sodium sulfite, sodium thiosulfate or cysteine.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 9

EC: 7

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5QYQ8|NQRF_IDILO Na(+)-translocating NADH-quinone reductase subunit F OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=nqrF PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 131 AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRS-LIES 189
           AG  +  +  LK GD V IS   G  FA       D    ++    G+G++P+RS L + 
Sbjct: 242 AGKMSSYIFSLKPGDKVTISGPFGEFFA------KDTDAEMVFIGGGAGMAPMRSHLFDQ 295

Query: 190 GFSSKERSDVRLYYGARNLKRMAYQDKF----KEWESSGVKIVPVLSQPDGNWSGETGYV 245
               K    V  +YGAR+ K M Y + F    +E E+    +     QP+ NW G+TG++
Sbjct: 296 MRRIKTDRKVSFWYGARSKKEMFYVEDFDMLAEENENFDWHVALSDPQPEDNWEGDTGFI 355

Query: 246 QAA-FSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
               + R  K  + P+     +CG   M   V +++   GV  E I+
Sbjct: 356 HNVLYERYLKDHDAPEDCEFYMCGPPVMNAAVINLLKDLGVEDENIM 402

NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.

Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) (taxid: 283942)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A8GAC4|NQRF_SERP5 Na(+)-translocating NADH-quinone reductase subunit F OS=Serratia proteamaculans (strain 568) GN=nqrF PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G  +  +  LK GD V IS   G  FA       D    ++    G+G++P+RS I    
Sbjct: 242 GIMSSYIWSLKAGDKVTISGPFGEFFA------KDTDAEMIFIGGGAGMAPMRSHIFDQL 295

Query: 192 SS-KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLS----QPDGNWSGETGYVQ 246
           +  K +  +  +YGAR+L+ M Y++ F + ++        ++    QP+ NW+G TG++ 
Sbjct: 296 NRLKSKRKITFWYGARSLREMFYEEDFNQLQAENENFTWHVALSDPQPEDNWTGYTGFIH 355

Query: 247 AAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                +  +    P+     +CG   M   V  ++   GV  E I+
Sbjct: 356 NVLLENYLRNHPAPEDCEFYMCGPPMMNAAVIKMLKDLGVEDENIM 401

NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q15YQ1|NQRF_PSEA6 Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=nqrF PE=3 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 131 AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190
           AG  +  +  LK+GD   IS   G  FA    +  D    ++    G+G++P+RS I   
Sbjct: 242 AGKMSSYIWSLKEGDKATISGPFGEFFA----KKTD--AEMVFIGGGAGMAPMRSHIFDQ 295

Query: 191 FSS-KERSDVRLYYGARNLKRMAYQDKFK--EWESSGVKIVPVLS--QPDGNWSGETGYV 245
               K    +  +YGAR+L+ M Y + F   + E+   K    LS  QP+ NW G TG++
Sbjct: 296 LRRLKTDRKISFWYGARSLREMFYVEDFDMLQKENDNFKWHVALSDPQPEDNWEGMTGFI 355

Query: 246 QAAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                 +  K    P+     +CG   M   V S++   GV  E I+
Sbjct: 356 HQVLLENYLKDHPAPEDCEFYMCGPPMMNAAVISMLKDLGVEDENIM 402

NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) (taxid: 342610)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A1JNZ2|NQRF_YERE8 Na(+)-translocating NADH-quinone reductase subunit F OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=nqrF PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G  +  +  LK GD V IS   G  FA       D    ++    G+G++P+RS I    
Sbjct: 242 GIMSSYIWSLKPGDKVVISGPFGEFFA------KDTDAEMVFIGGGAGMAPMRSHIFDQL 295

Query: 192 S---SKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGY 244
               SK R  +  +YGAR+ + M Y++ F +   E+   +    LS  QP+ NW+G TG+
Sbjct: 296 KRLHSKRR--ISFWYGARSRREMFYEEDFDQLQAENDNFRWHVALSDPQPEDNWTGYTGF 353

Query: 245 VQAAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
           +      +  K    P+     +CG   M   V  ++   GV  E I+
Sbjct: 354 IHNVLLENYLKNHPAPEDCEFYMCGPPMMNAAVIKMLKDLGVEDENIM 401

NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q66DP5|ASCD_YERPS CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ascD PE=1 SV=3

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 100/245 (40%), Gaps = 33/245 (13%)

Query: 58  PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFA 117
           P  L  I    E +  +S+ +   P  A     AGQY+ L +   G+    +IA+ P   
Sbjct: 102 PCKLDSIEFVGEDIAILSLRL---PPTAKIQYLAGQYIDLIIN--GQRRSYSIANAPG-- 154

Query: 118 SASGAFEFLVKSVAGSTAE--VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA 175
             +G  E  V+ V        +   LK   ++ I    G  F  +     D  P V + A
Sbjct: 155 -GNGNIELHVRKVVNGVFSNIIFNELKLQQLLRIEGPQGTFFVRE-----DNLPIVFL-A 207

Query: 176 TGSGISPIRSLIESGFSSKERSDVRLYYG---ARNLKRMAYQDKFKEW--ESSGVKIVPV 230
            G+G +P++S++E+  +  ++  V +Y+G     N     Y D   EW  +   +  VPV
Sbjct: 208 GGTGFAPVKSMVEALINKNDQRQVHIYWGMPAGHNF----YSDIANEWAIKHPNIHYVPV 263

Query: 231 LSQPDGNWSGETGYVQAAFSR---AKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287
           +S  D  W+G TG+V  A         +FN     V  CG   M     +  +  G++  
Sbjct: 264 VSGDDSTWTGATGFVHQAVLEDIPDLSLFN-----VYACGSLAMITAARNDFINHGLAEN 318

Query: 288 KILKN 292
           K   +
Sbjct: 319 KFFSD 323

Participates in the conversion of CDP-6-deoxy-D-glycero-L-threo-4-hexulose to 3,6-dideoxy-D-glycero-D-glycero-4-hexulose together with CDP-6-deoxy-D-glycero-L-threo-4-hexulose-3-dehydrase (E1) in two consecutive steps. The detailed mechanism of E3 is not yet resolved.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A5DQE4|MCR1_PICGU NADH-cytochrome b5 reductase 2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCR1 PE=3 SV=2

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 23/198 (11%)

Query: 112 SPPSFASASGAFEFLVKSV-AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           +P S     G  +F++K    G  +    GLK+GD V       +G  V     P+++ +
Sbjct: 101 TPVSDVDQKGTIDFVIKKYDGGKMSTHFHGLKEGDTVSF-----KGPIVKWKWEPNQFQS 155

Query: 171 VLIFATGSGISPIRSLI-ESGFSSKERSDVRLYYGARNLKRMAYQ---DKFKEWESSGVK 226
           + +   G+GI+P+  L+ E   + ++++ V+L+YG    + +  +   D   E     V 
Sbjct: 156 IALIGGGTGITPLYQLLHEITKNPEDKTKVKLFYGNLTEEDILIKKELDDIAEKHKDQVS 215

Query: 227 IVPVLSQPDGNWSGETGYVQAAF--------SRAKKIF--NPQGTGVVLCGQK---QMAE 273
           I   + +   NW GETG++   F        S+  K+F   P G    L G K       
Sbjct: 216 ITYFVDKASANWKGETGHIDKEFLQSNLPGPSKDSKVFVCGPPGLYKALSGVKVSPTDQG 275

Query: 274 EVTSIVLAEGVSSEKILK 291
           EVT ++   G + E + K
Sbjct: 276 EVTGVLAELGYTKENVYK 293

May mediate the reduction of outer membrane cytochrome b5.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q7WTJ2|DMPP_ACICP Phenol hydroxylase P5 protein OS=Acinetobacter calcoaceticus (strain PHEA-2) GN=mphP PE=1 SV=3

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 19/199 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG--STAEVLCGLKKGDVV 147
           +AGQY+ ++  ++      +IA+ PS     G  E  ++ V G  +T  V   L  GD +
Sbjct: 133 QAGQYINVQFPNIEGTRAFSIANSPS---EVGIVELHIRKVEGGAATTYVHEQLATGDQL 189

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
           +IS   G+ F    ++  D+   + I A GSG+S  +S+I     S +   + L+ GAR+
Sbjct: 190 DISGPYGQFF----VRKSDDQNAIFI-AGGSGLSSPQSMILDLLESGDSRTIYLFQGARD 244

Query: 208 LKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGYVQAAFSRAKKIFNPQ--GT 261
           L  +  ++ F++   +    + +P L+  +P+  W+G TG+V  A +     F  +  G 
Sbjct: 245 LAELYNRELFEQLVKDYPNFRYIPALNAPKPEDQWTGFTGFVHEAVA---DYFENRCGGH 301

Query: 262 GVVLCGQKQMAEEVTSIVL 280
              LCG   M +   S ++
Sbjct: 302 KAYLCGPPIMIDSAISTLM 320

Probable electron transfer from NADPH, via FAD and the 2Fe-2S center, to the oxygenase activity site of the enzyme.

Acinetobacter calcoaceticus (strain PHEA-2) (taxid: 871585)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 7

>sp|Q66E01|NQRF_YERPS Na(+)-translocating NADH-quinone reductase subunit F OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=nqrF PE=3 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G  +  +  LK GD V IS   G  FA       D    ++    G+G++P+RS I    
Sbjct: 242 GIMSSYIWSLKPGDKVVISGPFGEFFA------KDTDAEMVFIGGGAGMAPMRSHIFDQL 295

Query: 192 SS-KERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGYVQ 246
                +  +  +YGAR+ + M Y++ F +   E+   +    LS  QP+ NW+G TG++ 
Sbjct: 296 KRLHSKRKISFWYGARSRREMFYEEDFDQLQAENDNFRWHVALSDPQPEDNWTGYTGFIH 355

Query: 247 AAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                +  K    P+     +CG   M   V  ++   GV  E I+
Sbjct: 356 NVLLENYLKDHPAPEDCEFYMCGPPMMNAAVIKMLKDLGVEDENIM 401

NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
224111562	255	predicted protein [Populus trichocarpa]	0.870	1.0	0.800	1e-119
225424144	290	PREDICTED: fruit protein pKIWI502 [Vitis	0.959	0.968	0.719	1e-118
147838607	290	hypothetical protein VITISV_018719 [Viti	0.959	0.968	0.715	1e-118
356536242	295	PREDICTED: fruit protein pKIWI502-like [	0.986	0.979	0.719	1e-117
297849940	295	oxidoreductase NAD-binding domain-contai	0.976	0.969	0.712	1e-116
357444597	385	Fruit protein pKIWI502 [Medicago truncat	0.979	0.745	0.708	1e-115
224099439	255	predicted protein [Populus trichocarpa]	0.866	0.996	0.784	1e-115
18394201	295	FAD/NAD(P)-binding oxidoreductase [Arabi	0.976	0.969	0.698	1e-115
255582909	292	Fruit protein PKIWI502, putative [Ricinu	0.938	0.941	0.719	1e-113
449434568	304	PREDICTED: fruit protein pKIWI502-like [	0.918	0.884	0.736	1e-111

>gi|224111562|ref|XP_002315901.1| predicted protein [Populus trichocarpa] gi|222864941|gb|EEF02072.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/256 (80%), Positives = 236/256 (92%), Gaps = 1/256 (0%)

Query: 38  RRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQL 97
           RRRLAT+AAA VRQDTT+WT  PL+EI PAAESLFHVSID+SD PD+A+SHTRAGQYLQL
Sbjct: 1   RRRLATVAAA-VRQDTTIWTQAPLSEIEPAAESLFHVSIDVSDYPDLAASHTRAGQYLQL 59

Query: 98  RVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGF 157
           RV DV KP+FLAIASPPS+A+  GAFEFLVKSVAGSTAE+LCGLKKGDVVE+SQ  GRGF
Sbjct: 60  RVPDVEKPSFLAIASPPSYAAEKGAFEFLVKSVAGSTAELLCGLKKGDVVELSQATGRGF 119

Query: 158 AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217
            +D+I+P ++YPTVLIFATGSGISPIRSLIESGFS+ +RSDVRLYYGARN+KRMAYQD+F
Sbjct: 120 EIDQIEPAEKYPTVLIFATGSGISPIRSLIESGFSADKRSDVRLYYGARNIKRMAYQDRF 179

Query: 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS 277
           K+WESSGVKIVPVLSQPDG W+GETGYVQAAF+ AK+I++P GTG VLCGQKQM EE+TS
Sbjct: 180 KDWESSGVKIVPVLSQPDGRWTGETGYVQAAFAMAKQIYSPTGTGAVLCGQKQMTEEITS 239

Query: 278 IVLAEGVSSEKILKNF 293
           I++++GVS EKILKNF
Sbjct: 240 ILVSDGVSIEKILKNF 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424144|ref|XP_002283966.1| PREDICTED: fruit protein pKIWI502 [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/292 (71%), Positives = 248/292 (84%), Gaps = 11/292 (3%)

Query: 2   ALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPL 61
           +++L+P    PHAH      PMSI+R     HLK  RRR  ++AAA +RQDTTVWTP PL
Sbjct: 10  SVSLTPHLRFPHAHRKY---PMSIIR-----HLK--RRRFTSIAAA-LRQDTTVWTPAPL 58

Query: 62  AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASG 121
           + + PAA+SLFHV+ID+SD+PDI SSH+ AGQYLQLR+ D  KP+FLAIASPPS A+A G
Sbjct: 59  SSVHPAADSLFHVTIDVSDSPDILSSHSSAGQYLQLRLPDFAKPSFLAIASPPSLAAARG 118

Query: 122 AFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
            FEFLVKSV GSTAE+LCGLKKGDVVE++  MGRGF +DRI PP++Y TVLIFATGSGIS
Sbjct: 119 EFEFLVKSVPGSTAELLCGLKKGDVVELTPAMGRGFDIDRISPPEDYHTVLIFATGSGIS 178

Query: 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGE 241
           PIRSLIESGFS+ +RSDVRLYYGARNL+RMAYQD+FK+WES+GVKIVPVLSQPD +W+GE
Sbjct: 179 PIRSLIESGFSADKRSDVRLYYGARNLQRMAYQDRFKDWESTGVKIVPVLSQPDNSWTGE 238

Query: 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           TGYVQAAF+RAKKI++PQ TG VLCGQ QM EEVTSI++ +GVSSEKILKNF
Sbjct: 239 TGYVQAAFARAKKIYSPQSTGAVLCGQGQMTEEVTSILVTDGVSSEKILKNF 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838607|emb|CAN69513.1| hypothetical protein VITISV_018719 [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/292 (71%), Positives = 247/292 (84%), Gaps = 11/292 (3%)

Query: 2   ALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPL 61
           +++L+P    PHAH      PMSI+R     HLK  RRR  ++AAA +RQDTTVWTP PL
Sbjct: 10  SVSLTPHLRFPHAHRKY---PMSIIR-----HLK--RRRFTSIAAA-LRQDTTVWTPAPL 58

Query: 62  AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASG 121
           + + PAA+SLFHV+ID+SD+PDI SSH+ AGQYLQLR+ D  KP+FLAIASP S A+A G
Sbjct: 59  SSVHPAADSLFHVTIDVSDSPDILSSHSSAGQYLQLRLPDFAKPSFLAIASPXSLAAARG 118

Query: 122 AFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
            FEFLVKSV GSTAE+LCGLKKGDVVE++  MGRGF +DRI PP++Y TVLIFATGSGIS
Sbjct: 119 EFEFLVKSVPGSTAELLCGLKKGDVVELTPAMGRGFDIDRISPPEDYHTVLIFATGSGIS 178

Query: 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGE 241
           PIRSLIESGFS+ +RSDVRLYYGARNL+RMAYQD+FK+WES+GVKIVPVLSQPD +W+GE
Sbjct: 179 PIRSLIESGFSADKRSDVRLYYGARNLQRMAYQDRFKDWESTGVKIVPVLSQPDNSWTGE 238

Query: 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           TGYVQAAF+RAKKI++PQ TG VLCGQ QM EEVTSI++ +GVSSEKILKNF
Sbjct: 239 TGYVQAAFARAKKIYSPQSTGAVLCGQGQMTEEVTSILVTDGVSSEKILKNF 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536242|ref|XP_003536648.1| PREDICTED: fruit protein pKIWI502-like [Glycine max]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/299 (71%), Positives = 250/299 (83%), Gaps = 10/299 (3%)

Query: 1   MALALSPSPSL------PHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTT 54
           M+L  SP PSL      PH H S   P MSILRR+PL     +RRRLAT++AA +RQDT 
Sbjct: 1   MSLLFSPPPSLTGLSLHPHVHFS---PSMSILRRLPLNLRTTRRRRLATVSAA-LRQDTA 56

Query: 55  VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPP 114
           VWTP PL+E+  AAESLFH++ID+SDAPD+A+SHT AGQYLQLRV D  KP+FLAIASPP
Sbjct: 57  VWTPAPLSEVEHAAESLFHIAIDVSDAPDLAASHTLAGQYLQLRVPDAPKPSFLAIASPP 116

Query: 115 SFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF 174
             A+A G FEFLVKSVAGSTAE LC LK+GDVVE+SQVMG GF +DRI PP+ + TVL+F
Sbjct: 117 KLAAARGVFEFLVKSVAGSTAEALCALKRGDVVELSQVMGNGFDIDRIHPPENFGTVLVF 176

Query: 175 ATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQP 234
           ATGSGISPIRSLIESGF + +RSDVRLYYGARNL+RMAYQD+FK+WESSGVKIVPVLSQP
Sbjct: 177 ATGSGISPIRSLIESGFDAGKRSDVRLYYGARNLQRMAYQDRFKDWESSGVKIVPVLSQP 236

Query: 235 DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           D NW+GE+GYVQAAFSR K+I +P  TG VLCGQKQM EEVTSI++A+GVS++KILKNF
Sbjct: 237 DENWTGESGYVQAAFSREKQISDPLTTGAVLCGQKQMTEEVTSILVADGVSADKILKNF 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849940|ref|XP_002892851.1| oxidoreductase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338693|gb|EFH69110.1| oxidoreductase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/289 (71%), Positives = 245/289 (84%), Gaps = 3/289 (1%)

Query: 8   SPSLPHAHVSQTFPPMSILRRIPL---LHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEI 64
           +PS+ HAH S +  PM ILRR+PL   L L    R  + ++AAAVRQD ++WTP PL+ I
Sbjct: 7   APSVTHAHFSHSLSPMFILRRLPLTRHLRLSRNNRVASVVSAAAVRQDASLWTPAPLSLI 66

Query: 65  SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFE 124
             AAESLFH+SIDIS+APD+ +S+TR GQYLQLRV DV KP+F+AIASPPS A++ GAFE
Sbjct: 67  ESAAESLFHISIDISNAPDLVASYTRPGQYLQLRVPDVEKPSFMAIASPPSLAASRGAFE 126

Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
           FLVKS+AGSTAE+LCGLKKG+ VE+S VMG GF +D I PP++YPTVLIFATGSGISPIR
Sbjct: 127 FLVKSIAGSTAEILCGLKKGETVELSPVMGNGFNIDLIDPPEKYPTVLIFATGSGISPIR 186

Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGY 244
           SLIESGF +  RSDVRLYYGARNLKRMAYQDKFKEWESSGVK+VPVLSQPD  W GETGY
Sbjct: 187 SLIESGFGADRRSDVRLYYGARNLKRMAYQDKFKEWESSGVKVVPVLSQPDDGWKGETGY 246

Query: 245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           VQAAF+RAK++  P+ TG VLCGQKQMAEE+TSI++A+GVS++K+LKNF
Sbjct: 247 VQAAFARAKQLAAPKATGAVLCGQKQMAEEITSILVADGVSNDKLLKNF 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444597|ref|XP_003592576.1| Fruit protein pKIWI502 [Medicago truncatula] gi|355481624|gb|AES62827.1| Fruit protein pKIWI502 [Medicago truncatula]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 246/295 (83%), Gaps = 8/295 (2%)

Query: 3   LALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQ----RRRLATLAAAAVRQDTTVWTP 58
           L+L+P     HAH S T  PMSILRR    +L P     R RLATL+AA VRQDTTVWTP
Sbjct: 95  LSLTPPQIHSHAHFSPTPFPMSILRR---FNLNPTNHRLRHRLATLSAA-VRQDTTVWTP 150

Query: 59  TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFAS 118
            PL+EI PAAESLFHVSID+SD+PD+A+SHTRAGQYLQL+V D  KP+FLAIASPP  A 
Sbjct: 151 APLSEIEPAAESLFHVSIDVSDSPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAI 210

Query: 119 ASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178
             G FEFLVKSV GSTAE LCGLKKGDVVE+S VMG GF + RI PP+++ TVL+FATGS
Sbjct: 211 KLGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGS 270

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNW 238
           GISPIRSLIESGF + +RSDVRL+YGARNLKRMAYQ++F++WESSGVKIVPVLSQ D +W
Sbjct: 271 GISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFEDWESSGVKIVPVLSQADDSW 330

Query: 239 SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           +GE+G+VQAA++RAK++ NP  TG VLCGQKQM EE+TSI++A+GVS+EKILKNF
Sbjct: 331 TGESGFVQAAYTRAKELSNPSSTGAVLCGQKQMTEEITSILVADGVSAEKILKNF 385

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099439|ref|XP_002311484.1| predicted protein [Populus trichocarpa] gi|222851304|gb|EEE88851.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/255 (78%), Positives = 235/255 (92%), Gaps = 1/255 (0%)

Query: 39  RRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLR 98
           RRLAT+AAA V QDTTVWT  PL+ I PAAESLFHV ID+ D+PD+A+SHTRAGQYLQLR
Sbjct: 2   RRLATVAAA-VWQDTTVWTQAPLSGIEPAAESLFHVRIDVLDSPDLAASHTRAGQYLQLR 60

Query: 99  VVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFA 158
           V DV KP+FLAIASPPS A++ GAF+FLVKSVAGSTAE+LCGLK+GDVVE+SQ MGRGF 
Sbjct: 61  VPDVEKPSFLAIASPPSDAASKGAFDFLVKSVAGSTAELLCGLKRGDVVELSQAMGRGFD 120

Query: 159 VDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218
           +++I+P ++YPTVLIFATGSGISPIRSLIESGF++ +RSDVRLYYGARN+KRMAYQD+FK
Sbjct: 121 IEQIEPAEKYPTVLIFATGSGISPIRSLIESGFNADKRSDVRLYYGARNVKRMAYQDRFK 180

Query: 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSI 278
           +WESSGVKIVPVLSQPD NW+GE+ YVQAAFSRAK+I++P GTGVVLCGQKQM EE+TSI
Sbjct: 181 DWESSGVKIVPVLSQPDDNWTGESNYVQAAFSRAKQIYSPTGTGVVLCGQKQMTEEITSI 240

Query: 279 VLAEGVSSEKILKNF 293
           ++++GVSSEKILKNF
Sbjct: 241 LVSDGVSSEKILKNF 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394201|ref|NP_563963.1| FAD/NAD(P)-binding oxidoreductase [Arabidopsis thaliana] gi|5103813|gb|AAD39643.1|AC007591_8 Contains a PF|00175 Oxidoreductase FAD/NADH-binding domain. ESTs gb|H76345 and gb|AA651465 come from this gene [Arabidopsis thaliana] gi|12744999|gb|AAK06879.1|AF344328_1 unknown protein [Arabidopsis thaliana] gi|15451092|gb|AAK96817.1| Unknown protein [Arabidopsis thaliana] gi|18377448|gb|AAL66890.1| unknown protein [Arabidopsis thaliana] gi|332191150|gb|AEE29271.1| FAD/NAD(P)-binding oxidoreductase [Arabidopsis thaliana]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/289 (69%), Positives = 243/289 (84%), Gaps = 3/289 (1%)

Query: 8   SPSLPHAHVSQTFPPMSILRRIPL---LHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEI 64
           +PS+ HAH S +  PM ILR +PL   L L    R  + ++AAAVRQD ++WTP PL+ I
Sbjct: 7   APSVTHAHFSHSLSPMFILRHLPLTRHLRLSRNNRVASVVSAAAVRQDASLWTPAPLSLI 66

Query: 65  SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFE 124
             AAESLFH+SIDIS+APD+ +S+TR GQYLQ+RV DV KP+F+AIASPPS AS+ GAFE
Sbjct: 67  ESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPSFMAIASPPSLASSRGAFE 126

Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
           FLVKS+AGSTAE+LCGLKKG+ VE+S VMG GF +D I PP+EYPTVLIFATGSGISPIR
Sbjct: 127 FLVKSIAGSTAEILCGLKKGETVELSSVMGNGFNIDLIDPPEEYPTVLIFATGSGISPIR 186

Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGY 244
           SLIESGF +  RSDVRLYYGARNL RMAYQ+KFKEWES+GVK+VPVLSQPD  W GETGY
Sbjct: 187 SLIESGFGADRRSDVRLYYGARNLNRMAYQEKFKEWESAGVKVVPVLSQPDDGWKGETGY 246

Query: 245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           VQAAF+RAK++  P+ TG VLCGQKQMAEE+TS+++A+GVS++K+LKNF
Sbjct: 247 VQAAFARAKQLSAPKATGAVLCGQKQMAEEITSMLVADGVSNDKLLKNF 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582909|ref|XP_002532226.1| Fruit protein PKIWI502, putative [Ricinus communis] gi|223528083|gb|EEF30157.1| Fruit protein PKIWI502, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/285 (71%), Positives = 237/285 (83%), Gaps = 10/285 (3%)

Query: 11  LPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVR--QDTTVWTPTPLAEISPAA 68
           +PHAH S    PMSILRR     L P+   +  +A+ A    QDTT+W+  PL+ I PAA
Sbjct: 16  IPHAHNSH---PMSILRR-----LTPRNLNIRRVASVAAAARQDTTLWSHAPLSLIEPAA 67

Query: 69  ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVK 128
           ESLFH++ID+SD+PD+ SSH+RAGQYLQLR+ DV KP+FLAIASPPS+A+  GAFEFLVK
Sbjct: 68  ESLFHITIDVSDSPDVVSSHSRAGQYLQLRIPDVEKPSFLAIASPPSYAAKKGAFEFLVK 127

Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE 188
           SV  STAE+LC LKKGDVVE++Q MG GF +DRI PP++Y TVLIFATGSGISPIRSLIE
Sbjct: 128 SVPASTAELLCRLKKGDVVELTQAMGGGFDIDRISPPEKYCTVLIFATGSGISPIRSLIE 187

Query: 189 SGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA 248
           SGF +  RSDVRLYYGARNL RMAYQD+FKEWESSGVKIVPVLS+PD  W+GE+GYVQAA
Sbjct: 188 SGFGANRRSDVRLYYGARNLNRMAYQDRFKEWESSGVKIVPVLSEPDDRWTGESGYVQAA 247

Query: 249 FSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           FSRAK+I NP  TG VLCGQKQMAEEVTSI+LA+GVSSEKILKNF
Sbjct: 248 FSRAKQIDNPVATGAVLCGQKQMAEEVTSILLADGVSSEKILKNF 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434568|ref|XP_004135068.1| PREDICTED: fruit protein pKIWI502-like [Cucumis sativus] gi|449506357|ref|XP_004162727.1| PREDICTED: fruit protein pKIWI502-like [Cucumis sativus]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/273 (73%), Positives = 233/273 (85%), Gaps = 4/273 (1%)

Query: 25  ILRRIPLLHLKPQRR----RLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISD 80
           ++RR+   HL+   R    R AT AAAAVRQDT  WT  PLAE+ PAAESLFHVSID+SD
Sbjct: 32  LIRRLTPGHLRFNLRHHAGRFATAAAAAVRQDTAAWTQAPLAEVEPAAESLFHVSIDVSD 91

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG 140
           APD+A+SHTRAGQYLQLRV DV KPTFLAIASPP  ASA G F+FLVKSV GS AE+LCG
Sbjct: 92  APDLAASHTRAGQYLQLRVPDVEKPTFLAIASPPLLASAEGVFQFLVKSVEGSIAELLCG 151

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR 200
           LKKGDVV++SQVMG+GF VD+I PP ++P+V IFATGSGISPIRSLIESGF + +R+DVR
Sbjct: 152 LKKGDVVQLSQVMGKGFDVDQIAPPQDFPSVFIFATGSGISPIRSLIESGFGASKRTDVR 211

Query: 201 LYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQG 260
           LYYGARNLKRMAYQD+F EWESSGVK+VPVLSQP+ +W+G++GYVQAAFS AKK F+P  
Sbjct: 212 LYYGARNLKRMAYQDRFDEWESSGVKVVPVLSQPESDWTGDSGYVQAAFSNAKKAFDPLS 271

Query: 261 TGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
           TG V+CGQK M EEVTSI++A+GVSSEKILKNF
Sbjct: 272 TGAVICGQKPMTEEVTSILVADGVSSEKILKNF 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2037708	295	AT1G15140 [Arabidopsis thalian	0.976	0.969	0.643	4.5e-98
TIGR_CMR|CHY_0934	280	CHY_0934 "hydrogenase, gamma s	0.648	0.678	0.257	2e-11
TIGR_CMR|GSU_0085	280	GSU_0085 "heterodisulfide redu	0.576	0.603	0.265	1.4e-09
TIGR_CMR|SPO_A0033	406	SPO_A0033 "NADH:ubiquinone oxi	0.525	0.379	0.293	1.8e-07
UNIPROTKB|Q8EID5	405	nqrF "Na(+)-translocating NADH	0.522	0.377	0.289	2.4e-07
TIGR_CMR|SO_0907	405	SO_0907 "NADH:ubiquinone oxido	0.522	0.377	0.289	2.4e-07
TAIR|locus:2156917	360	FNR1 "AT5G66190" [Arabidopsis	0.501	0.408	0.260	3.2e-07
TAIR|locus:2198651	369	FNR2 "AT1G20020" [Arabidopsis	0.508	0.403	0.251	4.5e-07
TIGR_CMR|CPS_1085	407	CPS_1085 "NADH:ubiquinone oxid	0.525	0.378	0.281	5.4e-07
UNIPROTKB|Q8EHV4	418	nqrF "Na(+)-translocating NADH	0.522	0.366	0.295	5.7e-07

TAIR|locus:2037708 AT1G15140 [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 186/289 (64%), Positives = 223/289 (77%)

Query:     8 SPSLPHAHVSQTFPPMSILRRIPL---LHLKPQXXXXXXXXXXXXXQDTTVWTPTPLAEI 64
             +PS+ HAH S +  PM ILR +PL   L L                QD ++WTP PL+ I
Sbjct:     7 APSVTHAHFSHSLSPMFILRHLPLTRHLRLSRNNRVASVVSAAAVRQDASLWTPAPLSLI 66

Query:    65 SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIXXXXXXXXXXXXXE 124
               AAESLFH+SIDIS+APD+ +S+TR GQYLQ+RV DV KP+F+AI             E
Sbjct:    67 ESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPSFMAIASPPSLASSRGAFE 126

Query:   125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
             FLVKS+AGSTAE+LCGLKKG+ VE+S VMG GF +D I PP+EYPTVLIFATGSGISPIR
Sbjct:   127 FLVKSIAGSTAEILCGLKKGETVELSSVMGNGFNIDLIDPPEEYPTVLIFATGSGISPIR 186

Query:   185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGY 244
             SLIESGF +  RSDVRLYYGARNL RMAYQ+KFKEWES+GVK+VPVLSQPD  W GETGY
Sbjct:   187 SLIESGFGADRRSDVRLYYGARNLNRMAYQEKFKEWESAGVKVVPVLSQPDDGWKGETGY 246

Query:   245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKNF 293
             VQAAF+RAK++  P+ TG VLCGQKQMAEE+TS+++A+GVS++K+LKNF
Sbjct:   247 VQAAFARAKQLSAPKATGAVLCGQKQMAEEITSMLVADGVSNDKLLKNF 295

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

TIGR_CMR|CHY_0934 CHY_0934 "hydrogenase, gamma subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 172 (65.6 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 53/206 (25%), Positives = 91/206 (44%)

Query:    90 RAGQYLQLRVVDVGKPTFLAIXXXXXXXXXXXXXEFLVKSVAGSTAEVLCGLKKGDVVEI 149
             + GQ  Q+ +  VG+ T ++I             EF +K V G    V+  ++ G  V I
Sbjct:    43 KPGQVAQISIFGVGEAT-ISITSSPTRTGML---EFSIKKV-GRLTSVIHQMEPGMKVGI 97

Query:   150 SQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD---VRLYYGAR 206
                 G  F  + ++  D    +L    G G++P+RSLI+   + + R D   V + YGAR
Sbjct:    98 RGPYGNHFPYEMMKGKD----LLFIGGGIGLAPLRSLIDFVLAPENRKDYGKVEILYGAR 153

Query:   207 NLKRMAYQ-DKFKEW-ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
             +   + ++ D F  W +    K+   + +P+  W G  G+V A         NPQ    +
Sbjct:   154 SSADLCFKYDLFDNWPKQPDTKVYVTIDRPEEGWDGHVGFVPAYLEELNP--NPQNKVTI 211

Query:   265 LCGQKQMAEEVTSIVLAEGVSSEKIL 290
              CG   M + V   +   G S ++++
Sbjct:   212 TCGPPIMIKFVLQALEKMGYSEDQVV 237

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|GSU_0085 GSU_0085 "heterodisulfide reductase, cytochrome reductase subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 158 (60.7 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 50/188 (26%), Positives = 81/188 (43%)

Query:    90 RAGQYLQLRVVDVGKPTFLAIXXXXXXXXXXXXXEFLVKSVAGSTAEVLCGLKKGDVVEI 149
             RAGQ+ +      G+ TF                E   ++V G   E L  L+ GD + +
Sbjct:    44 RAGQFAEYSAFGAGEATFCI----ASAPTRQGYIECCFRAV-GRVTEALRSLETGDTIGV 98

Query:   150 SQVMGRGFAVDRIQPPDEYPTVLIFATGS-GISPIRSLIESGFSSKER-SDVRLYYGARN 207
                 G  F V+       +   L+F  G   + P+R+LI      +E+  D+ + YGAR 
Sbjct:    99 RGPYGNSFPVEEF-----FGKNLVFVAGGIALPPLRTLIWQCLDWREKFGDITIVYGART 153

Query:   208 LKRMAYQDKFKEWES-SGVKIVPVLSQPDGN---WSGETGYVQAAFSRAKKIFNPQGTGV 263
                + Y+ + +EWE  S V++V  +  P GN   W G+ G+V     +A    +   T  
Sbjct:   154 EADLVYKRELREWEERSDVRLVKTVD-PGGNSPSWDGQVGFVPTVLEQAAPAAD--NTIA 210

Query:   264 VLCGQKQM 271
             ++CG   M
Sbjct:   211 LVCGPPVM 218

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_A0033 SPO_A0033 "NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 144 (55.7 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 49/167 (29%), Positives = 77/167 (46%)

Query:   131 AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190
             AG  +  +  LK GD V IS   G  FA D     D+   ++    G+G++P+RS I   
Sbjct:   240 AGKMSSYIFNLKPGDEVTISGPFGEFFARDT----DK--EMVFIGGGAGMAPMRSHIFDQ 293

Query:   191 FSS-KERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGYV 245
                 K +  +  +YGAR+ K M + + F     E+   +    LS  QP+ +W G TG++
Sbjct:   294 LKRLKSKRKISFWYGARSKKEMFFVEDFDMLAAENPNFEWHVALSDAQPEDDWKGYTGFI 353

Query:   246 Q-AAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                 F    K    P+     +CG   M + V +++L  GV  E I+
Sbjct:   354 HNVLFEEYLKNHPAPEDCEFYMCGPPIMNQSVINMLLELGVDREDIM 400

GO:0006814 "sodium ion transport" evidence=ISS

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=ISS

UNIPROTKB|Q8EID5 nqrF "Na(+)-translocating NADH-quinone reductase subunit F" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 48/166 (28%), Positives = 74/166 (44%)

Query:   132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
             G  +  +  LK GD V IS   G  F  D      +   V I   G+G++P+RS I    
Sbjct:   240 GKMSSYIFNLKAGDKVTISGPFGEFFVKDT-----DAEMVFI-GGGAGMAPMRSHIFDQL 293

Query:   192 SSKE-RSDVRLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLSQP--DGNWSGETGYVQ 246
              SK+ +  +  +YGAR+ + + YQ  F    +     V    LS+P  + NW+G TG++ 
Sbjct:   294 KSKKTKRKMSFWYGARSTREVFYQQDFDTLAAENDNFVWHVALSEPLPEDNWTGYTGFIH 353

Query:   247 AAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                  +  K    P+     +CG   M   V  ++ + GV  E IL
Sbjct:   354 NVLYENYLKNHKAPEDCEFYMCGPPIMNSSVIKMLESLGVEPENIL 399

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

TIGR_CMR|SO_0907 SO_0907 "NADH:ubiquinone oxidoreductase, Na translocating, beta subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 48/166 (28%), Positives = 74/166 (44%)

Query:   132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
             G  +  +  LK GD V IS   G  F  D      +   V I   G+G++P+RS I    
Sbjct:   240 GKMSSYIFNLKAGDKVTISGPFGEFFVKDT-----DAEMVFI-GGGAGMAPMRSHIFDQL 293

Query:   192 SSKE-RSDVRLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLSQP--DGNWSGETGYVQ 246
              SK+ +  +  +YGAR+ + + YQ  F    +     V    LS+P  + NW+G TG++ 
Sbjct:   294 KSKKTKRKMSFWYGARSTREVFYQQDFDTLAAENDNFVWHVALSEPLPEDNWTGYTGFIH 353

Query:   247 AAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                  +  K    P+     +CG   M   V  ++ + GV  E IL
Sbjct:   354 NVLYENYLKNHKAPEDCEFYMCGPPIMNSSVIKMLESLGVEPENIL 399

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

TAIR|locus:2156917 FNR1 "AT5G66190" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 43/165 (26%), Positives = 79/165 (47%)

Query:   130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
             V G  +  LC LK GD  +I+  +G+    + + P D   T+++  TG+GI+P RS +  
Sbjct:   174 VKGVCSNFLCDLKPGDEAKITGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFLWK 229

Query:   190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
              F  +E  D +      L+ G      + Y+++F   KE      ++   +S+   N  G
Sbjct:   230 MFF-EEHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKNPDNFRLDFAVSREQTNEKG 288

Query:   241 ETGYVQAAFSR-AKKIFN---PQGTGVVLCGQKQMAEEVTSIVLA 281
             E  Y+Q   +  A++++       T V +CG K M + +  I+++
Sbjct:   289 EKMYIQTRMAEYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 333

GO:0003959 "NADPH dehydrogenase activity" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IDA

GO:0045157 "electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198651 FNR2 "AT1G20020" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 42/167 (25%), Positives = 81/167 (48%)

Query:   128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
             ++V G  +  LC L  G  V+++  +G+    + + P D   TV++ ATG+GI+P RS +
Sbjct:   181 ETVKGVCSNFLCDLAPGSDVKLTGPVGK----EMLMPKDPNATVIMLATGTGIAPFRSFL 236

Query:   188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWESSG---VKIVPVLSQPDGNW 238
                F  K   D +      L+ G      + YQ++F + ++      ++   +S+   N 
Sbjct:   237 WKMFFEKH-DDYKFNGLAWLFLGVPTTSSLLYQEEFDKMKAKAPENFRVDYAISREQAND 295

Query:   239 SGETGYVQAAFSR--AK--KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
              GE  Y+Q   ++  A+  ++     T V +CG K M + +  I+++
Sbjct:   296 KGEKMYIQTRMAQYAAELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 342

GO:0003959 "NADPH dehydrogenase activity" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TIGR_CMR|CPS_1085 CPS_1085 "NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 140 (54.3 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 47/167 (28%), Positives = 75/167 (44%)

Query:   131 AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190
             AG  +  +  LK GD V IS   G  FA +     +E   ++    G+G++P+RS I   
Sbjct:   241 AGKMSSFIFSLKAGDKVTISGPFGEFFAKET---DNE---MVFIGGGAGMAPMRSHIFDQ 294

Query:   191 FSSKE-RSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGYV 245
                 E +  +  +YGAR+ + M Y+D +     ++   +    LS  QP+ NW G TG++
Sbjct:   295 LKRLESKRKMSFWYGARSKREMFYEDDYNGLAADNDNFQWHVALSDPQPEDNWDGLTGFI 354

Query:   246 Q-AAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                 F    K    P+     +CG   M   V  ++   GV  E I+
Sbjct:   355 HNVLFEEYLKDHEAPEDCEYYMCGPPMMNAAVIGMLKDLGVEDENIM 401

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|Q8EHV4 nqrF "Na(+)-translocating NADH-quinone reductase subunit F" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 140 (54.3 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 49/166 (29%), Positives = 71/166 (42%)

Query:   132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
             G  +  +  LK GD V IS   G  FA D      +   V I   G+G++P+RS I    
Sbjct:   253 GKMSSYIWSLKAGDKVTISGPFGEFFAKDT-----DAEMVFI-GGGAGMAPMRSHIFDQL 306

Query:   192 SS-KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLS--QPDGNWSGETGYVQ 246
                K +  +  +YGAR+ + M Y + F    +     V    LS  QP+ NW G TG++ 
Sbjct:   307 KRLKSKRKMSFWYGARSKREMFYVEDFDGLAAENDNFVWHVALSDPQPEDNWDGYTGFIH 366

Query:   247 AAF--SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
                  +  K    P+     +CG   M   V  ++   GV  E IL
Sbjct:   367 NVLYENYLKNHDAPEDCEFYMCGPPMMNAAVIGMLKNLGVEDENIL 412

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
cd06211	238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	2e-30
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	4e-30
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	3e-29
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	6e-25
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	3e-24
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	6e-21
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	2e-20
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	2e-20
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	2e-19
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	1e-18
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	5e-18
cd06213	227	cd06213, oxygenase_e_transfer_subunit, The oxygena	1e-15
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	1e-15
cd06214	241	cd06214, PA_degradation_oxidoreductase_like, NAD(P	3e-15
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	3e-15
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	1e-14
PRK08051	232	PRK08051, fre, FMN reductase; Validated	2e-14
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	3e-14
cd06218	246	cd06218, DHOD_e_trans, FAD/NAD binding domain in t	6e-14
cd06220	233	cd06220, DHOD_e_trans_like2, FAD/NAD binding domai	2e-12
TIGR01941	405	TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, N	2e-12
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	5e-12
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	1e-11
COG2871	410	COG2871, NqrF, Na+-transporting NADH:ubiquinone ox	1e-11
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	2e-11
cd06209	228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	6e-11
cd06190	232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	7e-11
cd06210	236	cd06210, MMO_FAD_NAD_binding, Methane monooxygenas	2e-09
cd06191	231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	8e-09
PLN03115	367	PLN03115, PLN03115, ferredoxin--NADP(+) reductase;	9e-09
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	1e-08
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	3e-08
PRK05464	409	PRK05464, PRK05464, Na(+)-translocating NADH-quino	4e-08
cd06184	247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	1e-07
TIGR02911	261	TIGR02911, sulfite_red_B, sulfite reductase, subun	2e-07
PRK00054	250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	3e-07
COG0369	587	COG0369, CysJ, Sulfite reductase, alpha subunit (f	4e-07
PRK08221	263	PRK08221, PRK08221, anaerobic sulfite reductase su	5e-07
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	1e-06
cd06219	248	cd06219, DHOD_e_trans_like1, FAD/NAD binding domai	2e-06
cd06192	243	cd06192, DHOD_e_trans_like, FAD/NAD binding domain	4e-06
TIGR03224	411	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc	9e-06
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	2e-05
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	4e-05
cd06207	382	cd06207, CyPoR_like, NADPH cytochrome p450 reducta	6e-05
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	1e-04
cd06201	289	cd06201, SiR_like2, Cytochrome p450- like alpha su	2e-04
cd06182	267	cd06182, CYPOR_like, NADPH cytochrome p450 reducta	2e-04
cd06206	384	cd06206, bifunctional_CYPOR, These bifunctional pr	5e-04
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	7e-04
PLN03116	307	PLN03116, PLN03116, ferredoxin--NADP+ reductase; P	7e-04
cd06196	218	cd06196, FNR_like_1, Ferredoxin reductase-like pro	0.004

>gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

 Score =  113 bits (286), Expect = 2e-30
 Identities = 66/208 (31%), Positives = 94/208 (45%), Gaps = 19/208 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC--GLKKGDVV 147
           +AGQY+ L+          +IAS PS    +G  E  ++ V G  A       LK+GD +
Sbjct: 37  QAGQYVNLQAPGYEGTRAFSIASSPS---DAGEIELHIRLVPGGIATTYVHKQLKEGDEL 93

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
           EIS   G  F    ++  D+ P + I A GSG+S  RS+I       +   + L++GAR 
Sbjct: 94  EISGPYGDFF----VRDSDQRPIIFI-AGGSGLSSPRSMILDLLERGDTRKITLFFGART 148

Query: 208 LKRMAYQDKFKEWES--SGVKIVPVLS--QPDGNWSGETGYVQAAFSRAKKIFNPQGTG- 262
              + Y D+F+  E      K VP LS   P+ NW G TG+V  A   AKK F     G 
Sbjct: 149 RAELYYLDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDA---AKKHFKNDFRGH 205

Query: 263 -VVLCGQKQMAEEVTSIVLAEGVSSEKI 289
              LCG   M +     ++   +    I
Sbjct: 206 KAYLCGPPPMIDACIKTLMQGRLFERDI 233

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score =  112 bits (283), Expect = 4e-30
 Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 90  RAGQYLQLRVVDVGKPT--FLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCGLKKGDV 146
           + GQY+ L +   G+      +IAS P      G  E  VK V  G  +  L  LK GD 
Sbjct: 24  KPGQYVDLHLPGDGRGLRRAYSIASSPD---EEGELELTVKIVPGGPFSAWLHDLKPGDE 80

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           VE+S   G  F      P +E   V++ A G GI+P RS++    + K   ++ L YGAR
Sbjct: 81  VEVSGPGGDFF-----LPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGAR 135

Query: 207 NLKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
               + + D+ +E    G   ++V  LS+      G  G +         + +  G  V 
Sbjct: 136 TPADLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVY 195

Query: 265 LCGQKQMAEEVTSIVLAEGVSSEKIL 290
           +CG   MA+ V   +++ GV  E+I 
Sbjct: 196 ICGPPAMAKAVREALVSLGVPEERIH 221

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score =  110 bits (278), Expect = 3e-29
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 15/204 (7%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGDVV 147
            AGQYL L ++D G     +IAS P      G  E  +++V G   +  V   LK+  +V
Sbjct: 27  LAGQYLDL-LLDDGDKRPFSIASAPH---EDGEIELHIRAVPGGSFSDYVFEELKENGLV 82

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
            I   +G  F    ++   + P +LI A G+G +PI+S++E   +   +  + LY+GAR 
Sbjct: 83  RIEGPLGDFF----LREDSDRPLILI-AGGTGFAPIKSILEHLLAQGSKRPIHLYWGART 137

Query: 208 LKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVL 265
            + +   +  + W         VPVLS+P+  W G TG V  A    +   +     V  
Sbjct: 138 EEDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAV--LEDFPDLSDFDVYA 195

Query: 266 CGQKQMAEEVTSIVLAEGVSSEKI 289
           CG  +M        + +G+  E  
Sbjct: 196 CGSPEMVYAARDDFVEKGLPEENF 219

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 99.2 bits (248), Expect = 6e-25
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 15/205 (7%)

Query: 90  RAGQYLQLRVVDVGKPT-FLAIASPPSFASASGAFEFLVKSVAG--STAEVLCGLKKGDV 146
            AGQY+ + V    +     + A+PP+     G  EF V++V G   +  +   LK GD 
Sbjct: 25  WAGQYVNVTVPGRPRTWRAYSPANPPN---EDGEIEFHVRAVPGGRVSNALHDELKVGDR 81

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           V +S   G       ++   + P + I A G+G++P+R+++E      E   V L++GAR
Sbjct: 82  VRLSGPYGT----FYLRRDHDRPVLCI-AGGTGLAPLRAIVEDALRRGEPRPVHLFFGAR 136

Query: 207 NLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
             + +   +      +    +++VPV+S  +G W+G  G V     R     +     + 
Sbjct: 137 TERDLYDLEGLLALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDGP--DWADHDIY 194

Query: 265 LCGQKQMAEEVTSIVLAEGVSSEKI 289
           +CG   M +     +LA G   E+I
Sbjct: 195 ICGPPAMVDATVDALLARGAPPERI 219

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score = 98.1 bits (245), Expect = 3e-24
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 20/225 (8%)

Query: 69  ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVK 128
              F + ++     D      + GQ++ L +  VG+       S  S  +  G  E  ++
Sbjct: 11  IKTFTLRLED---DDEELFTFKPGQFVMLSLPGVGEAPI----SISSDPTRRGPLELTIR 63

Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT--VLIFATGSGISPIRSL 186
            V G   E L  LK GD V +    G GF      P +E     +L+ A G G++P+RSL
Sbjct: 64  RV-GRVTEALHELKPGDTVGLRGPFGNGF------PVEEMKGKDLLLVAGGLGLAPLRSL 116

Query: 187 IESGFSSKER-SDVRLYYGARNLKRMAYQDKFKEWE-SSGVKIVPVLSQPDGNWSGETGY 244
           I     ++E    V L YGAR  + + ++++ KEW   S V+++  + + +  W+G  G 
Sbjct: 117 INYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGL 176

Query: 245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           V           +P  T  ++CG   M   V   +L  GV  E+I
Sbjct: 177 VTDLLPELT--LDPDNTVAIVCGPPIMMRFVAKELLKLGVPEEQI 219

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 85.0 bits (211), Expect = 6e-21
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 175 ATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE--SSGVKIVPVLS 232
           A G+GI+P+ S++++    ++ ++V L YG R    +  +++ +E       +K+V V S
Sbjct: 3   AGGTGIAPLYSVLKALLEDEDGTEVYLVYGNRTEDDLLLREELEELAKKYPNLKVVAV-S 61

Query: 233 QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEV 275
           + D  W G  GYV  A        +   T V +CG   M + V
Sbjct: 62  RTDDGWYGRKGYVTDALLEEHLSEDLGDTDVYVCGPPPMMKAV 104

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 87.6 bits (218), Expect = 2e-20
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 27/212 (12%)

Query: 90  RAGQYLQLRV-VDVGKPTFLAIASPPSFASASGA--FEFLVKSV-AGSTAEVLCGLKKGD 145
           +AGQ+ +L +  D GK     +    S ASA      EF +  V  G     L  LK GD
Sbjct: 26  QAGQFTKLGLPNDDGKL----VRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLKPGD 81

Query: 146 VVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD-VRLYY 203
            + +  +  G    +D + P      + + ATG+GI+P  S++       ER D + L +
Sbjct: 82  TIYVGKKPTGF-LTLDEVPPGK---RLWLLATGTGIAPFLSMLRD-LEIWERFDKIVLVH 136

Query: 204 GARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN--- 257
           G R  + +AYQD+ +          + VP++S+   N +  TG +      + ++     
Sbjct: 137 GVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKENGAL-TGRIPDLI-ESGELEEHAG 194

Query: 258 ----PQGTGVVLCGQKQMAEEVTSIVLAEGVS 285
               P+ + V+LCG  QM ++   ++  +G S
Sbjct: 195 LPLDPETSHVMLCGNPQMIDDTQELLKEKGFS 226

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 60/191 (31%), Positives = 81/191 (42%), Gaps = 26/191 (13%)

Query: 110 IASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169
           IA+PP   S        +    GS+   +  LK GD V  S   G  F         +  
Sbjct: 107 IATPPPGNSD-------IPPGIGSS--YIFNLKPGDKVTASGPFGEFFI-----KDTDRE 152

Query: 170 TVLIFATGSGISPIRSLIESGFSSKERSDVR---LYYGARNLKRMAYQDKFK--EWESSG 224
            V I   G+G++P+RS I      K     R    +YGAR+LK + YQ++F+  E E   
Sbjct: 153 MVFIGG-GAGMAPLRSHIFHLL--KTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPN 209

Query: 225 VKIVPVLS--QPDGNWSGETGYVQAAFSR--AKKIFNPQGTGVVLCGQKQMAEEVTSIVL 280
            K  PVLS  QP+ NW G TG++         KK   P+     LCG   M   V  ++ 
Sbjct: 210 FKYHPVLSEPQPEDNWDGYTGFIHQVLLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLD 269

Query: 281 AEGVSSEKILK 291
             GV  E I  
Sbjct: 270 DLGVPRENIAF 280

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 84.8 bits (210), Expect = 2e-19
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 19/213 (8%)

Query: 82  PDIASSHTRAGQYLQLRVVDVG-KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139
               +   + GQ++ LRV     +P   ++AS P      G  E  ++    G   + + 
Sbjct: 29  LPFVALTFKPGQFVMLRVPGGVRRP--YSLASAPD---DKGELELHIRVYEVGKVTKYIF 83

Query: 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDV 199
           GLK+GD + +   +G GF  ++I  P     VL+ A G+GI+P+ ++ +      + + V
Sbjct: 84  GLKEGDKIRVRGPLGNGFLREKIGKP-----VLLIAGGTGIAPLYAIAKELKEKGDANKV 138

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ 259
            L YGAR  K +   D+ +E   +  ++ PV       W G  G+V       K++ + +
Sbjct: 139 TLLYGARTAKDLLLLDELEEL--AEKEVHPVTDD---GWKGRKGFVTTDV--LKELLDLE 191

Query: 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292
              V +CG   M + V   +   GV     L +
Sbjct: 192 VDDVYICGPPAMVKAVREKLKEYGVPISASLVS 224

Length = 252

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 19/237 (8%)

Query: 59  TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFAS 118
             +  +      +  + + + +   I      AGQY+ + V    +    ++A+ P+   
Sbjct: 3   GTVVAVEALTHDIRRLRLRLEEPEPIK---FFAGQYVDITVPGTEETRSFSMANTPA--- 56

Query: 119 ASGAFEFLVKSVAGST-AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFAT 176
             G  EF++K   G   +  L  GL  GD V ++   G       ++   + P VLI   
Sbjct: 57  DPGRLEFIIKKYPGGLFSSFLDDGLAVGDPVTVTGPYGTCT----LRESRDRPIVLI-GG 111

Query: 177 GSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQ- 233
           GSG++P+ SL+    +S     VR +YGAR  + + Y ++             +P LS+ 
Sbjct: 112 GSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIAALGEKIPDFTFIPALSES 171

Query: 234 -PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
             D  WSGETG V     R +      G  V LCG   M +    ++   GV  ++I
Sbjct: 172 PDDEGWSGETGLVTEVVQRNEA--TLAGCDVYLCGPPPMIDAALPVLEMSGVPPDQI 226

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 20/214 (9%)

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGS--TAE 136
            PD        GQY+ + + + G+P   A  ++S P        +   VK   G   +  
Sbjct: 27  PPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD---EDSLYRISVKREDGGGGSNW 83

Query: 137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER 196
           +   LK GD +E+S   G  F +D +        +L+ A G GI+P  S++ +    +  
Sbjct: 84  LHDHLKVGDTLEVSAPAGD-FVLDDLPERK----LLLLAGGIGITPFLSMLRT-LLDRGP 137

Query: 197 SDVRLYYGARNLKRMAYQD-KFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255
           +DV L + AR    +A++D      E     ++ + ++         G +    SR    
Sbjct: 138 ADVVLVHAARTPADLAFRDELELAAELPNALLLGLYTE----RGKLQGRIDV--SRLLSA 191

Query: 256 FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
               G  V LCG     + V   + A GV  +++
Sbjct: 192 APDGGREVYLCGPGPFMQAVRLALEALGVPDDRV 225

Length = 266

>gnl|CDD|99809 cd06213, oxygenase_e_transfer_subunit, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 29/234 (12%)

Query: 67  AAESLFH--VSIDI-SDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAF 123
           A E L H  V + +  D P       +AGQY +L +  +      + A+ P      G  
Sbjct: 7   AQERLTHDIVRLTVQLDRP----IAYKAGQYAELTLPGLPAARSYSFANAPQ---GDGQL 59

Query: 124 EFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
            F ++ V G   +  +    + G+ + +    G  F +     P + P + I A GSG++
Sbjct: 60  SFHIRKVPGGAFSGWLFGADRTGERLTVRGPFGD-FWLR----PGDAPILCI-AGGSGLA 113

Query: 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ----DKFKEWESSGVKIVPVLSQ--PD 235
           PI +++E   ++  + DV L +GAR  +R  Y                + +PVLS+   D
Sbjct: 114 PILAILEQARAAGTKRDVTLLFGART-QRDLYALDEIAAIAARWRGRFRFIPVLSEEPAD 172

Query: 236 GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
            +W G  G V    +          T   LCG   M +   +++ A G++ E I
Sbjct: 173 SSWKGARGLVTEHIAE----VLLAATEAYLCGPPAMIDAAIAVLRALGIAREHI 222

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 227

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 26/215 (12%)

Query: 91  AGQYLQLRVVDVGK-------PTFLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCGLK 142
            GQ+++L+  D G+       P      SP       G F+ L+K    G  ++ L  LK
Sbjct: 31  VGQHVELKAPDDGEQVVRPYTPI-----SPDD---DKGYFDLLIKIYPGGKMSQYLHSLK 82

Query: 143 KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRL 201
            GD VEI    G+       +P  +   + + A G+GI+P+  LI +     E ++ + L
Sbjct: 83  PGDTVEIRGPFGK----FEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISL 138

Query: 202 YYGARNLKRMAYQDKFKEWESSG---VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP 258
            Y  R  + +  +++  E         K+  VLS+P   W G  G++     +      P
Sbjct: 139 LYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPP 198

Query: 259 QGTGVVL-CG-QKQMAEEVTSIVLAEGVSSEKILK 291
               +VL CG    +   V  ++   G   + + K
Sbjct: 199 SEDTLVLVCGPPPMIEGAVKGLLKELGYKKDNVFK 233

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 37/235 (15%)

Query: 74  VSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVA 131
           ++ D+ +    A  + R GQ+L LRV   G+    +  I S P            VK V 
Sbjct: 19  ITFDVPEELRDAFRY-RPGQFLTLRVPIDGEEVRRSYSICSSPG----DDELRITVKRVP 73

Query: 132 GSTAEV-LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           G          LK GD +E+    GR F +  +     Y   ++FA GSGI+P+ S++++
Sbjct: 74  GGRFSNWANDELKAGDTLEVMPPAGR-FTLPPLPGARHY---VLFAAGSGITPVLSILKT 129

Query: 190 GFSSKERSDVRLYYGARN------------LKRMAYQDKFKEWESSGVKIVPVLSQPDGN 237
             + +  S V L YG R             LK   Y D+          ++ VLS+  G+
Sbjct: 130 ALAREPASRVTLVYGNRTEASVIFREELADLKA-RYPDRL--------TVIHVLSREQGD 180

Query: 238 WSGETGYVQAAFSRA---KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
                G + AA   A     +   +     LCG + M + V + +L  GV +E+I
Sbjct: 181 PDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVPAERI 235

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 17/166 (10%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG--STAEVLCGLKKGDVV 147
            AGQY++  + D GK    +IA+ P    + G  E  ++ + G   T  V   LK+ D++
Sbjct: 133 LAGQYIEFILKD-GKRRSYSIANAPH---SGGPLELHIRHMPGGVFTDHVFGALKERDIL 188

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
            I   +G  F    ++   + P VL+ A+G+G +PI+S++E   +   +  V LY+GAR 
Sbjct: 189 RIEGPLGTFF----LREDSDKPIVLL-ASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARR 243

Query: 208 LKRMAYQDKF-KEW--ESSGVKIVPVLSQPDG--NWSGETGYVQAA 248
            + + Y     ++W  E    + VPV+S       W+G TG+V  A
Sbjct: 244 PEDL-YLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQA 288

Length = 339

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF-----S 192
           LC LK GD V+I+  +G+      + P D   T+++ ATG+GI+P RS +   F      
Sbjct: 109 LCDLKPGDDVQITGPVGKTM----LLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD 164

Query: 193 SKERSDVRLYYGARNLKRMAYQD---KFKEWESSGVKIVPVLSQPDGNWSGETGYVQ-AA 248
            K      L++G  N   + Y D   K+ +      +I    S+   N  G   YVQ   
Sbjct: 165 YKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRI 224

Query: 249 FSRAKKIFN---PQGTGVVLCGQKQM 271
              A++I+N      T V +CG K M
Sbjct: 225 AEYAEEIWNLLDKDNTHVYICGLKGM 250

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|236142 PRK08051, fre, FMN reductase; Validated

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 22/191 (11%)

Query: 64  ISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASA---- 119
           +    ++++ V +     P+   S  RAGQYL + + +  K  F +IAS P         
Sbjct: 10  VEAITDTVYRVRL----VPEAPFSF-RAGQYLMVVMGEKDKRPF-SIASTPREKGFIELH 63

Query: 120 SGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSG 179
            GA E      A     V+  + K   +E+   +  G A  R +   E P +LI A G+G
Sbjct: 64  IGASEL--NLYAM---AVMERILKDGEIEVD--IPHGDAWLREE--SERPLLLI-AGGTG 113

Query: 180 ISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGN 237
            S  RS++ +  +      + LY+G R    +   D+ +        +  VPV+ QP+  
Sbjct: 114 FSYARSILLTALAQGPNRPITLYWGGREEDHLYDLDELEALALKHPNLHFVPVVEQPEEG 173

Query: 238 WSGETGYVQAA 248
           W G+TG V  A
Sbjct: 174 WQGKTGTVLTA 184

Length = 232

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 28/224 (12%)

Query: 82  PDIASSHT-RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG 140
           P++A S T + GQ++Q+ +  VG+   ++I S P+     G FE  ++   G    V+  
Sbjct: 30  PELAESFTFKPGQFVQVTIPGVGEVP-ISICSSPT---RKGFFELCIRRA-GRVTTVIHR 84

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER-SDV 199
           LK+GD+V +    G GF VD +    E   +L+ A G G++P+RS++     ++ +  ++
Sbjct: 85  LKEGDIVGVRGPYGNGFPVDEM----EGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNI 140

Query: 200 RLYYGARNLKRMAYQDK----FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255
            L YGA+  + + + D+      E E   VKI+  +++ D  W G  G  Q    R  K 
Sbjct: 141 TLIYGAKYYEDLLFYDELIKDLAEAE--NVKIIQSVTR-DPEWPGCHGLPQGFIERVCKG 197

Query: 256 ----------FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
                      +P+ T   +CG   M + V   ++  G   E+I
Sbjct: 198 VVTDLFREANTDPKNTYAAICGPPVMYKFVFKELINRGYRPERI 241

Length = 289

>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

 Score = 69.5 bits (171), Expect = 6e-14
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 33/212 (15%)

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS---GAFEFLVKSVAGSTAEV 137
           AP+IA+   + GQ++ LRV D   P  L    P S        G    L K V G    +
Sbjct: 18  APEIAA-AAKPGQFVMLRVPDGSDP-LLR--RPISIHDVDPEEGTITLLYK-VVGKGTRL 72

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISP----IRSLIESGFSS 193
           L  LK GD +++   +G GF +     PD+   VL+   G GI+P     + L E G   
Sbjct: 73  LSELKAGDELDVLGPLGNGFDL-----PDDDGKVLLVGGGIGIAPLLFLAKQLAERG--- 124

Query: 194 KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAK 253
                V +  G R+   +   ++F+   +  V +       DG+  G  G+V       K
Sbjct: 125 ---IKVTVLLGFRSADDLFLVEEFEALGAE-VYVATD----DGSA-GTKGFVTDLL---K 172

Query: 254 KIFNPQGTGVVL-CGQKQMAEEVTSIVLAEGV 284
           ++       VV  CG + M + V  +    GV
Sbjct: 173 ELLAEARPDVVYACGPEPMLKAVAELAAERGV 204

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 246

>gnl|CDD|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 21/175 (12%)

Query: 113 PPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL 172
           P S +   G     VK V G     L  LK+GD + I    G GF +           VL
Sbjct: 41  PMSLSYIDGPNSITVKKV-GEATSALHDLKEGDKLGIRGPYGNGFELV-------GGKVL 92

Query: 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLS 232
           +   G GI+P+  L E     K+ +DV +  GAR  + + + D+         ++  +++
Sbjct: 93  LIGGGIGIAPLAPLAERL---KKAADVTVLLGARTKEELLFLDRL----RKSDEL--IVT 143

Query: 233 QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287
             DG++ G  G+V       K++   +   + +CG + M  +V  I+   GV ++
Sbjct: 144 TDDGSY-GFKGFVTDLL---KELDLEEYDAIYVCGPEIMMYKVLEILDERGVRAQ 194

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 233

>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDV 199
           LK GD V IS   G  FA D      +   V I   G+G++P+RS I       K +  +
Sbjct: 249 LKPGDKVTISGPFGEFFAKD-----TDAEMVFI-GGGAGMAPMRSHIFDQLKRLKSKRKI 302

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLS--QPDGNWSGETGYVQAAF--SRAK 253
             +YGAR+L+ M YQ+ F + E+     V    LS  QP+ NW+G TG++      +  K
Sbjct: 303 SFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENYLK 362

Query: 254 KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
               P+     +CG   M   V  ++   GV  E IL
Sbjct: 363 DHDAPEDCEFYMCGPPMMNAAVIKMLEDLGVERENIL 399

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump [Transport and binding proteins, Cations and iron carrying compounds]. Length = 405

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 21/210 (10%)

Query: 90  RAGQYLQLRVVDV-GKPTF--LAIASPPSFASASGAFEFLVKSVAGSTAEV----LCGLK 142
            AGQ++ LR+  + G       +IAS P+     G  E  VK V G   EV       +K
Sbjct: 32  LAGQHVDLRLTAIDGYTAQRSYSIASSPT---QRGRVELTVKRVPG--GEVSPYLHDEVK 86

Query: 143 KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY 202
            GD++E+   +G  F  +   P    P VL+ A GSGI P+ S+I            RL 
Sbjct: 87  VGDLLEVRGPIG-TFTWN---PLHGDPVVLL-AGGSGIVPLMSMIRYRRDLGWPVPFRLL 141

Query: 203 YGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGN-WSGETGYVQAAFSRAKKIFNPQ 259
           Y AR  + + ++D+ ++       + +   L++     W G  G + A    A+ +    
Sbjct: 142 YSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADL-IAELVPPLA 200

Query: 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           G  V +CG     E  T ++L  GV  ++I
Sbjct: 201 GRRVYVCGPPAFVEAATRLLLELGVPRDRI 230

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 17/137 (12%)

Query: 90  RAGQYLQLRV----VDVGKPTFLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKK 143
           RAGQ+++L V    V   +    +++S P      G     VK+      +  ++  L  
Sbjct: 47  RAGQHVRLGVEIDGVRHWRS--YSLSSSP--TQEDGTITLTVKAQPDGLVSNWLVNHLAP 102

Query: 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIESGFSSKERSDVRLY 202
           GDVVE+SQ  G  F       PD  P  L+  A GSGI+P+ S++ +  +    +DV L 
Sbjct: 103 GDVVELSQPQG-DF-----VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLL 156

Query: 203 YGARNLKRMAYQDKFKE 219
           Y AR  + + + D+ + 
Sbjct: 157 YYARTREDVIFADELRA 173

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI-ESGFSSKERSDV 199
           LK GD V IS   G  FA D      +   V I   G+G++P+RS I +       +  +
Sbjct: 254 LKPGDKVTISGPFGEFFAKD-----TDAEMVFIGG-GAGMAPMRSHIFDQLKRLHSKRKI 307

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLS--QPDGNWSGETGYVQAAF--SRAK 253
             +YGAR+L+ M YQ+ F + ++          LS   P+ NW G TG++      +  K
Sbjct: 308 SFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLK 367

Query: 254 KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
               P+     +CG   M   V  ++   GV  E IL
Sbjct: 368 DHEAPEDCEYYMCGPPLMNASVIKMLKDLGVERENIL 404

Length = 410

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 21/224 (9%)

Query: 69  ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAF---EF 125
           E     ++ +   P   +   RAGQ+  LR    G         P + +SA        F
Sbjct: 5   EVRPTTTLTL--EPRGPALGHRAGQFAFLRFDASGWEE----PHPFTISSAPDPDGRLRF 58

Query: 126 LVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRS 185
            +K++   T  +   LK G  V +    GR F  D  +       + I A G GI+P  +
Sbjct: 59  TIKALGDYTRRLAERLKPGTRVTVEGPYGR-FTFDDRRAR----QIWI-AGGIGITPFLA 112

Query: 186 LIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245
           L+E+  +  +   V L+Y  R+ +   + D+ +   ++   ++ V+  P          V
Sbjct: 113 LLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVIDSPSDGRLTLEQLV 172

Query: 246 QAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           +A       + +     V  CG   MA+ +   + A GV + + 
Sbjct: 173 RAL------VPDLADADVWFCGPPGMADALEKGLRALGVPARRF 210

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

 Score = 60.7 bits (148), Expect = 6e-11
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 38/237 (16%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           + E+   ++S   +++++ +A  +A      GQY+ L+V     P      S  SF+SA 
Sbjct: 6   VTEVERLSDSTIGLTLELDEAGALA---FLPGQYVNLQV-----PGTDETRSY-SFSSAP 56

Query: 121 GA--FEFLVKSVAG--------STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           G    EFL++ + G          A+       GD + ++  +G  +  +  +P      
Sbjct: 57  GDPRLEFLIRLLPGGAMSSYLRDRAQP------GDRLTLTGPLGSFYLREVKRP------ 104

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK---FKEWESSGVKI 227
           +L+ A G+G++P  S+++          V L YG      +   D+     E    G   
Sbjct: 105 LLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELDRLEALAER-LPGFSF 163

Query: 228 VPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV 284
             V++ PD +W    GYV        +  N     V LCG   M + V S +  +G+
Sbjct: 164 RTVVADPD-SWHPRKGYVTDHL--EAEDLNDGDVDVYLCGPPPMVDAVRSWLDEQGI 217

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228

>gnl|CDD|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

 Score = 60.7 bits (148), Expect = 7e-11
 Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 19/208 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTA-EVLCGLKK-GDVV 147
             GQY  L +  V      ++A+    A+ASG +EF++K   G  A   L    + GD +
Sbjct: 25  LPGQYALLALPGVEGARAYSMAN---LANASGEWEFIIKRKPGGAASNALFDNLEPGDEL 81

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD--VRLYYGA 205
           E+    G  +    ++P ++   V I A GSG++P+ S++     S   SD  V L+YG 
Sbjct: 82  ELDGPYGLAY----LRPDEDRDIVCI-AGGSGLAPMLSILRGAARSPYLSDRPVDLFYGG 136

Query: 206 RNLKRMAYQDKFKEWESSG--VKIVPVLSQPDG----NWSGETGYVQAAFSRAKKIFNPQ 259
           R    +   D+     + G  +++ P +S         W G TG+V              
Sbjct: 137 RTPSDLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD-RLA 195

Query: 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSE 287
                  G   M + V  +++ EGV   
Sbjct: 196 EFEFYFAGPPPMVDAVQRMLMIEGVVPF 223

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. Length = 232

>gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 91  AGQYLQLRV--VDVGKPTFLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGDV 146
            GQ++++ +   D  +       S  +  +  G  EFL++ + G   +  +    K G  
Sbjct: 37  PGQFVEIEIPGTDTRRSY-----SLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQR 91

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           + +   +G  F +      +        A G+G++P+ S++       E  + RL++G  
Sbjct: 92  LNLRGPLGA-FGLRE----NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVN 146

Query: 207 NLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSR--AKKIFNPQGTG 262
               + Y D+ K    S   + +   + +P G W G  G V  A     A     P    
Sbjct: 147 TEAELFYLDELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPD--- 203

Query: 263 VVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
           + LCG   M +   +     GV  E++ 
Sbjct: 204 IYLCGPPGMVDAAFAAAREAGVPDEQVY 231

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236

>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 20/209 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGD 145
           R GQ++ L++   G+       + S P    A       VK V G   +  +   ++ G 
Sbjct: 29  RPGQHVTLKLDFDGEELRRCYSLCSSP----APDEISITVKRVPGGRVSNYLREHIQPGM 84

Query: 146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGA 205
            VE+    G    V + QPP  Y   L+ A GSGI+P+ ++I +   +   SD  L + A
Sbjct: 85  TVEVMGPQGH--FVYQPQPPGRY---LLVAAGSGITPLMAMIRATLQTAPESDFTLIHSA 139

Query: 206 RNLKRMAYQDKFKEWESS--GVKIVPVLSQ--PDGNWSGETGYVQAAFSRAKKIFNPQGT 261
           R    M +  + +E       ++++ + ++   D +        +   S    +   +  
Sbjct: 140 RTPADMIFAQELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQ--SLGAALIPDRLE 197

Query: 262 -GVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
               +CG   M + V + +   G+  E+I
Sbjct: 198 REAFICGPAGMMDAVETALKELGMPPERI 226

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 231

>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional

 Score = 55.4 bits (133), Expect = 9e-09
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   T+++ ATG+GI+P RS +  
Sbjct: 181 VKGVCSNFLCDLKPGAEVKITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 236

Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
            F  K   D +      L+ G      + Y+++F   KE      ++   +S+   N  G
Sbjct: 237 MFFEKH-DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKG 295

Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
           E  Y+Q   +       ++     T V +CG K M + +  I+++
Sbjct: 296 EKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVS 340

Length = 367

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 38/214 (17%)

Query: 90  RAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGSTAEVLCG------- 140
           + GQ+L L +   G+  + A  ++S PS      +    VK V G       G       
Sbjct: 29  KPGQFLTLELEIDGETVYRAYTLSSSPS---RPDSLSITVKRVPG-------GLVSNWLH 78

Query: 141 --LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD 198
             LK GD +  S   G    +D   P D+    L+ + GSGI+P+ S+      ++  +D
Sbjct: 79  DNLKVGDELWASGPAGEFTLIDH--PADKL---LLLSAGSGITPMMSMARWLLDTRPDAD 133

Query: 199 VRLYYGARNLKRMAYQDKFKEWES-----SGVKIVPVLSQPD-GNWSGETGYVQAA-FSR 251
           +   + AR+   + + D   E E         ++  +L QP  G W G  G + A   + 
Sbjct: 134 IVFIHSARSPADIIFAD---ELEELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLAL 190

Query: 252 AKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285
                  +   V +CG     + V S++   G  
Sbjct: 191 LVPDLKER--TVFVCGPAGFMKAVKSLLAELGFP 222

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 34/207 (16%)

Query: 85  ASSHTRA-----GQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVL 138
           AS+H R      GQY +L++         + A+ P+   A+   +FL++ +  G  +  L
Sbjct: 128 ASAHGRQLDFLPGQYARLQIPGTDDWRSYSFANRPN---ATNQLQFLIRLLPDGVMSNYL 184

Query: 139 ---CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE 195
              C +  GD +     +G  F +  +    E P V + A G+G+S    +++       
Sbjct: 185 RERCQV--GDEILFEAPLG-AFYLREV----ERPLVFV-AGGTGLSAFLGMLDELAEQGC 236

Query: 196 RSDVRLYYGARN------LKRM-AYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA 248
              V LYYG R+      L+R+ AY ++         +  PV+S+   +W G+ GY+   
Sbjct: 237 SPPVHLYYGVRHAADLCELQRLAAYAERLP-----NFRYHPVVSKASADWQGKRGYIHEH 291

Query: 249 FSRAKKIFNPQGTGVVLCGQKQMAEEV 275
           F +A+     Q   + LCG   M E V
Sbjct: 292 FDKAQ--LRDQAFDMYLCGPPPMVEAV 316

Length = 340

>gnl|CDD|235481 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSD 198
            LK GD V IS   G  FA D      +   V I   G+G++P+RS I       K +  
Sbjct: 252 SLKPGDKVTISGPFGEFFAKD-----TDAEMVFIGG-GAGMAPMRSHIFDQLKRLKSKRK 305

Query: 199 VRLYYGARNLKRMAYQDKFK--EWESSGVKIVPVLS--QPDGNWSGETGYVQAAF--SRA 252
           +  +YGAR+L+ M Y + F     E+   K    LS   P+ NW+G TG++      +  
Sbjct: 306 ISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLYENYL 365

Query: 253 KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
           K    P+     +CG   M   V  ++   GV  E IL
Sbjct: 366 KDHEAPEDCEYYMCGPPMMNAAVIKMLKDLGVEDENIL 403

Length = 409

>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 13/155 (8%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR 200
           +K GDV+E+S   G  F +D      + P VLI + G GI+P+ S++E+  +      V 
Sbjct: 91  VKVGDVLEVSAPAGD-FVLD---EASDRPLVLI-SAGVGITPMLSMLEALAAEGPGRPVT 145

Query: 201 LYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGE----TGYVQAAFSRAKK 254
             + ARN    A++D+ +E  +    +K+    S+P+     E     G +  A    ++
Sbjct: 146 FIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLAL--LRE 203

Query: 255 IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           +  P      LCG     + V   + A GV +E+I
Sbjct: 204 LLLPADADFYLCGPVPFMQAVREGLKALGVPAERI 238

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247

>gnl|CDD|131957 TIGR02911, sulfite_red_B, sulfite reductase, subunit B

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 41/201 (20%), Positives = 89/201 (44%), Gaps = 18/201 (8%)

Query: 92  GQYLQLRVVDVGKPTFLAIASPPSFAS-ASGAFEFLVKSVAGSTAEVLCGLKKGDVVEIS 150
           GQ+ ++ +   G+       +P S +    G  +  ++ V   T EV   LK+GD + + 
Sbjct: 34  GQFFEVSLPKYGE-------APISVSGIGEGYIDLTIRRVGKVTDEVF-TLKEGDNLFLR 85

Query: 151 QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS--SKERSDVRLYYGARNL 208
              G GF VD  +  +    +++ A G+G++P++ ++E  F    KE   + L  G +  
Sbjct: 86  GPYGNGFDVDNYKHKE----LVVVAGGTGVAPVKGVVEY-FVKNPKEIKSLNLILGFKTP 140

Query: 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQ 268
             + +++   EW+ + + +   L + + ++ G  G V         + + +    ++ G 
Sbjct: 141 DDILFKEDIAEWKGN-INLTLTLDEAEEDYKGNIGLVTKYIPEL-TLKDIEEVQAIVVGP 198

Query: 269 KQMAEEVTSIVLAEGVSSEKI 289
             M +     +L +G+  E I
Sbjct: 199 PIMMKFTVQELLKKGIKEENI 219

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum [Central intermediary metabolism, Sulfur metabolism]. Length = 261

>gnl|CDD|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 26/200 (13%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASAS-GAFEFLVKSVAGSTAEVLCGLKKGDVVE 148
           + GQ++ + V  V     L    P S +         L + V G   + L  LK+GD ++
Sbjct: 33  KPGQFVMVWVPGVEP--LLER--PISISDIDKNEITILYRKV-GEGTKKLSKLKEGDELD 87

Query: 149 ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208
           I   +G GF ++ I        VL+   G G++P+  L +     K+  +V    GAR  
Sbjct: 88  IRGPLGNGFDLEEI-----GGKVLLVGGGIGVAPLYELAKEL--KKKGVEVTTVLGARTK 140

Query: 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVL-CG 267
             + ++++F +       +    +  DG+  G  G+V          ++      +  CG
Sbjct: 141 DEVIFEEEFAK----VGDVYV--TTDDGS-YGFKGFVTDVLDELDSEYD-----AIYSCG 188

Query: 268 QKQMAEEVTSIVLAEGVSSE 287
            + M ++V  I+  + V + 
Sbjct: 189 PEIMMKKVVEILKEKKVPAY 208

Length = 250

>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 29/191 (15%)

Query: 104 KPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCGLKK-GDVVEISQVM 153
           KP   +IAS  S   +       V  V          G  +  L  L + GD + +    
Sbjct: 372 KPRLYSIAS--SPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQP 429

Query: 154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR-MA 212
            + F   R+    E P ++I   G+GI+P R+ ++   ++       L++G R+      
Sbjct: 430 NKNF---RLPEDPETPIIMI-GPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFL 485

Query: 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETG---YVQAAF-SRAKKIFN--PQGTGVVLC 266
           YQ++++E+   GV     L+     +S +     YVQ     +A +++    +G  + +C
Sbjct: 486 YQEEWEEYLKDGVLTRLDLA-----FSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVC 540

Query: 267 GQ-KQMAEEVT 276
           G  K MA++V 
Sbjct: 541 GDAKGMAKDVE 551

Length = 587

>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 41/201 (20%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 92  GQYLQLRVVDVGKPTFLAIASPPSFASAS-GAFEFLVKSVAGSTAEVLCGLKKGDVVEIS 150
           GQ+ ++ +  VG+       +P S +    G  +  ++ V G   + +  LK+GD + + 
Sbjct: 36  GQFFEVSLPKVGE-------APISVSDYGDGYIDLTIRRV-GKVTDEIFNLKEGDKLFLR 87

Query: 151 QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS--SKERSDVRLYYGARNL 208
              G GF VD  +  +    +++ A G+G++P++ L+   F    +E   + L  G +N 
Sbjct: 88  GPYGNGFPVDTYKGKE----LIVVAGGTGVAPVKGLMRY-FYENPQEIKSLDLILGFKNP 142

Query: 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQ 268
             + +++  K W    + ++  L + +  + G  G V   +     + +     V++ G 
Sbjct: 143 DDILFKEDLKRWREK-INLILTLDEGEEGYRGNVGLV-TKYIPELTLKDIDNMQVIVVGP 200

Query: 269 KQMAEEVTSIVLAEGVSSEKI 289
             M +      L  G+  E I
Sbjct: 201 PIMMKFTVLEFLKRGIKEENI 221

Length = 263

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           +  +   +  +  V ++              GQY+ LR    G     +  S P      
Sbjct: 1   VVSLQRLSPDVLRVRLEPDRPLPY-----LPGQYVNLRRAG-GLARSYSPTSLPD---GD 51

Query: 121 GAFEFLVKSV-AGSTAEVLCGL-KKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178
              EF ++    G+ +  L    + G  + +    G+ F         E P +L+   G+
Sbjct: 52  NELEFHIRRKPNGAFSGWLGEEARPGHALRLQGPFGQAFYRPEYG---EGPLLLV-GAGT 107

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW---ESSGVKIVPVLSQPD 235
           G++P+  +  +      + ++RL +GAR+   +        W   E    + +P +S+  
Sbjct: 108 GLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPAL-LWLAREHPNFRYIPCVSEG- 165

Query: 236 GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
              S     V+A    A      +   V LCG   M   V       G   ++I
Sbjct: 166 ---SQGDPRVRAGRIAAHLPPLTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRI 216

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99815 cd06219, DHOD_e_trans_like1, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)

Query: 68  AESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLV 127
           A ++    I+   AP IA    + GQ++ +R  + G+   L IA    +    G    +V
Sbjct: 10  APNVKLFEIE---APLIAK-KAKPGQFVIVRADEKGERIPLTIAD---WDPEKGTITIVV 62

Query: 128 KSVAGSTAEVLCGLKKGDVVEISQV---MGRGFAVDRIQPPDEYPTVLIFATGSGISPI- 183
           + V  ST E L  L++GD  +I  V   +G+   ++       Y TV+    G GI+PI 
Sbjct: 63  QVVGKSTRE-LATLEEGD--KIHDVVGPLGKPSEIE------NYGTVVFVGGGVGIAPIY 113

Query: 184 ---RSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219
              ++L E+G      + V    GAR    +  +D+F+ 
Sbjct: 114 PIAKALKEAG------NRVITIIGARTKDLVILEDEFRA 146

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, forming FADH2 via a semiquinone intermediate, and then transfers a hydride ion to convert NADP+ to NADPH. Length = 248

>gnl|CDD|99789 cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLAIA-SPPSFASASGAFEFLVKSVAGSTAEVLC 139
           AP  A    R GQ++ LR  +   P    I  S        G    LV+     T   + 
Sbjct: 18  APLAAR-LFRPGQFVFLRNFE--SPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKL-IA 73

Query: 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDV 199
            LK G+ +++   +G GF     + P +  TVL+ A G G++P+  + +    +   + V
Sbjct: 74  ELKPGEKLDVMGPLGNGF-----EGPKKGGTVLLVAGGIGLAPLLPIAK--KLAANGNKV 126

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIV 228
            +  GA+  K   + D++ E  +      
Sbjct: 127 TVLAGAKKAK-EEFLDEYFELPADVEIWT 154

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 243

>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)

Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
            +V G  +  LC LKKGD V++    G  F    + P     ++++  TG+G +P+R++ 
Sbjct: 231 NAVRGVASNYLCDLKKGDKVQVIGPFGSTF----LMPNHPESSIMMICTGTGSAPMRAMT 286

Query: 188 E-------SGFSSKERSDVRLYYGARNLKRMAY----QDKFKEWESSGVKIVPVLSQPDG 236
           E        G   K    + L++GAR  + + Y    Q   K++            QP  
Sbjct: 287 ERRRRRRDHGEGGK----LMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSRTPEQP-- 340

Query: 237 NWSGETGYVQAAF-SRAKKIF---NPQGTGVVLCGQKQMAEEV 275
                  YVQ A   RA  +        T + +CG K M E V
Sbjct: 341 -----KRYVQDAIRERAADVAALLKDPNTYIYICGLKGMEEGV 378

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 21/190 (11%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGA--FEFLVKSVAGSTAEVLCGLKKGDVV 147
           +AGQ+  L++    +   +    P + A +       F +K++   T  +   LK G  +
Sbjct: 244 QAGQFAFLKIE--IEEFRMR-PHPFTIACSHEGSELRFSIKALGDFTKTLKDNLKVGTKL 300

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
           E+    G+ F  +R        T +  A G GI+P  S++ +    K    V L+Y +RN
Sbjct: 301 EVDGPYGK-FDFERGLN-----TQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRN 354

Query: 208 LKRMAYQDKFKEW--ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVL 265
            +   Y ++ +    +   V +  +        S + GY+       +    P+   V  
Sbjct: 355 WEEALYAEELRALAQKLPNVVLHII-------DSSKDGYL-DQEDLERYPDRPRTRSVFF 406

Query: 266 CGQKQMAEEV 275
           CG  +M + +
Sbjct: 407 CGPIKMMDSL 416

Length = 438

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 29/196 (14%)

Query: 112  SPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV 171
            SP +     G    L +   G+  E +  L+ GD VE+      G  ++R +P D+    
Sbjct: 970  SPITLPDDLGVISILARGDKGTLKEWISALRPGDSVEMKAC--GGLRIER-RPADKQ--- 1023

Query: 172  LIF-----------ATGSGISPIRSLIESGFSSKERSD----VRLYYGARNLKRMAYQDK 216
             +F           A G+G++P+  +I +    K   D    +RL Y A ++  + Y++ 
Sbjct: 1024 FVFRGHVIRKLALIAGGTGVAPMLQIIRAAL-KKPYVDSIESIRLIYAAEDVSELTYREL 1082

Query: 217  FKEWESSG---VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTG--VVLCGQKQM 271
             + +        K   VL+ P   W+   G+V  A  +      P      V +CG   M
Sbjct: 1083 LESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQ--SALQPPSKDLLVAICGPPVM 1140

Query: 272  AEEVTSIVLAEGVSSE 287
               V + +LA G + E
Sbjct: 1141 QRAVKADLLALGYNME 1156

Length = 1167

>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 48/235 (20%), Positives = 80/235 (34%), Gaps = 73/235 (31%)

Query: 97  LRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDV 146
           L +  + KP + +I+S P           LV  V+          G  +  L GLK G  
Sbjct: 156 LELCPLIKPRYYSISSSP--LKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQR 213

Query: 147 VEISQVMGRGFAVDRIQP-----PDEYPTVLIFA-TGSGISPIRSLIE--SGFS--SKER 196
           V +            I+      P +    +I    G+G++P R+ ++  +       E 
Sbjct: 214 VTVF-----------IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEI 262

Query: 197 SDVRLYYGARNLKR-MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSR--AK 253
             V LY+G R+  +   Y+++ +E+E SGV                   +  AFSR   K
Sbjct: 263 GPVLLYFGCRHEDKDYLYKEELEEYEKSGV----------------LTTLGTAFSRDQPK 306

Query: 254 KI----------------FNPQGTGVVLCGQKQ-MAEEVTS----IVLAEGVSSE 287
           K+                       + +CG    M  +V      I+   G   E
Sbjct: 307 KVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDE 361

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 33/218 (15%)

Query: 90  RAGQYLQLRVVDVGKPT--FLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGD 145
             GQ+L LR    G+      +I S P    A G     VK + G   +      ++ GD
Sbjct: 34  APGQHLTLRREVDGEELRRSYSICSAP----APGEIRVAVKKIPGGLFSTWANDEIRPGD 89

Query: 146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGA 205
            +E+    G  F  D +  P     V   A GSGI+P+ S+ E+  +++ RS   L YG 
Sbjct: 90  TLEVMAPQGL-FTPD-LSTPHAGHYVA-VAAGSGITPMLSIAETVLAAEPRSTFTLVYGN 146

Query: 206 RNLKRMAYQDKFKEWE-------------SSGVKIVPVLS-QPDGNWSGETGYVQAAFSR 251
           R    + + ++  + +             S   +  P+LS + DG              R
Sbjct: 147 RRTASVMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDR 206

Query: 252 AKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           A + F        LCG + M ++    +   GV + ++
Sbjct: 207 ADEWF--------LCGPQAMVDDAEQALTGLGVPAGRV 236

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 24/179 (13%)

Query: 105 PTFLAIASPPSFASASGAFEFLV-KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQ 163
           P F ++AS    +S+ G  E  V K   G  +  L GLK GD ++        F     +
Sbjct: 100 PRFYSLAS----SSSDGFLEICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSF-----R 150

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA-YQDKFKEWES 222
           P      V++   G+GI+P+   I +   +  R  + LY+G R+      Y+D+  ++ +
Sbjct: 151 PAKGAAPVILIGAGTGIAPLAGFIRA---NAARRPMHLYWGGRDPASDFLYEDELDQYLA 207

Query: 223 SG--VKIVPVLSQPDGNWSGETGYVQAAF-SRAKKIFN--PQGTGVVLCGQKQMAEEVT 276
            G   ++    S+     + +  YVQ    + A+++      G  +++CG + MA+ V 
Sbjct: 208 DGRLTQLHTAFSR-----TPDGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVA 261

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289

>gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 43/206 (20%)

Query: 65  SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-----KPTFLAIASPPSFASA 119
             +  S  H+  D+S    +        +Y     + V      +P + +IAS P     
Sbjct: 11  PDSPRSTRHLEFDLSGNSVL--------KYQPGDHLGVIPPNPLQPRYYSIASSPDVDP- 61

Query: 120 SGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169
            G     V+ V           G  +  L GL+ G  V    V  R  A     P D   
Sbjct: 62  -GEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAKV---TVFIRP-APSFRLPKDPTT 116

Query: 170 TVLIFATGSGISPIRSLIESGF----SSKERSDVRLYYGARNLKR-MAYQDKFKEWESSG 224
            +++   G+GI+P R  ++       + K R    L++G RN      Y+++ +E    G
Sbjct: 117 PIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDG 176

Query: 225 VKIVPVLSQPDGNWSGETG----YVQ 246
                 L++ D  +S E      YVQ
Sbjct: 177 -----ALTRLDVAFSREQAEPKVYVQ 197

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267

>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 32/131 (24%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR----------LYYGARN-----L 208
           P D    +++ A G+G++P R  ++      ER+ +           L++G R+     L
Sbjct: 226 PSDPSTPLIMIAAGTGLAPFRGFLQ------ERAALLAQGRKLAPALLFFGCRHPDHDDL 279

Query: 209 KRMAYQDKFKEWESSG-VKIVPVLSQPDGNWSGETGYVQ-AAFSRAKKIFN--PQGTGVV 264
               Y+D+ +EWE++G V +    S+P G       YVQ   ++  ++++    QG  V 
Sbjct: 280 ----YRDELEEWEAAGVVSVRRAYSRPPGGG---CRYVQDRLWAEREEVWELWEQGARVY 332

Query: 265 LCGQKQMAEEV 275
           +CG  +MA  V
Sbjct: 333 VCGDGRMAPGV 343

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 65/232 (28%)

Query: 68  AESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPP-----SFASAS-- 120
              +  ++I     P       + GQ++ L         F ++ S       + AS+   
Sbjct: 9   DSDVIRLTI-----PKPKPFKWKPGQHVYLN--------FPSLLSFWQSHPFTIASSPED 55

Query: 121 --GAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVD-----RIQPPDEYPTVLI 173
                  ++++  G T  +L    K     +S  +     V+       +    Y  VL+
Sbjct: 56  EQDTLSLIIRAKKGFTTRLLRKALKSPGGGVSLKV----LVEGPYGSSSEDLLSYDNVLL 111

Query: 174 FATGSGISP----IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVP 229
            A GSGI+     +R L+     +     V+L +  R+ + +       EW       + 
Sbjct: 112 VAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDL-------EW------FLD 158

Query: 230 VL--SQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV 279
            L  +Q          YV               T VV+CG   + ++V + V
Sbjct: 159 ELRAAQELEVDGEIEIYV---------------TRVVVCGPPGLVDDVRNAV 195

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP--TVLIFATGSGISPIRSLIESGF---- 191
           LC  K GD V+I+   G+   +     P+E P  T ++ ATG+GI+P R  +   F    
Sbjct: 129 LCDAKPGDKVQITGPSGKVMLL-----PEEDPNATHIMVATGTGIAPFRGFLRRMFMEDV 183

Query: 192 -SSKERSDVRLYYGARNLKRMAYQDKF----KEWESSGVKIVPVLSQPDGNWSGETGYVQ 246
            + K      L+ G  N   + Y D+F    K++  +  +    LS+   N  G   YVQ
Sbjct: 184 PAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDN-FRYDYALSREQKNKKGGKMYVQ 242

Query: 247 AAFS-RAKKIFN--PQGTGVVLCGQKQM 271
                 + +IF     G  +  CG K M
Sbjct: 243 DKIEEYSDEIFKLLDNGAHIYFCGLKGM 270

Length = 307

>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 42/181 (23%)

Query: 124 EFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
           EF++KS        E L  L+ GD + I    G   A++      + P V I A G+GI+
Sbjct: 62  EFVIKSYPDHDGVTEQLGRLQPGDTLLIEDPWG---AIE-----YKGPGVFI-AGGAGIT 112

Query: 182 P----IRSLIESG--------FSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVP 229
           P    +R L   G        F++K   D            +  +D+ ++    G+K + 
Sbjct: 113 PFIAILRDLAAKGKLEGNTLIFANKTEKD------------IILKDELEKML--GLKFIN 158

Query: 230 VLS-QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK 288
           V++ + D  +    G +  AF   K+          +CG   M E +   +   GV  + 
Sbjct: 159 VVTDEKDPGY--AHGRIDKAF--LKQHVTDFNQHFYVCGPPPMEEAINGALKELGVPEDS 214

Query: 289 I 289
           I
Sbjct: 215 I 215

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	100.0
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	100.0
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	100.0
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	100.0
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	100.0
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	100.0
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	100.0
PRK08051	232	fre FMN reductase; Validated	100.0
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	100.0
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	100.0
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	100.0
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	100.0
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	100.0
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	100.0
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	100.0
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	100.0
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	100.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	100.0
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	100.0
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	100.0
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	100.0
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	100.0
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	100.0
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	100.0
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	100.0
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	100.0
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	100.0
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	100.0
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	100.0
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	100.0
PRK10926	248	ferredoxin-NADP reductase; Provisional	100.0
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	100.0
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	100.0
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	100.0
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	100.0
PRK05713	312	hypothetical protein; Provisional	100.0
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	100.0
PTZ00274	325	cytochrome b5 reductase; Provisional	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	100.0
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	100.0
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	100.0
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	100.0
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	100.0
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	100.0
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	100.0
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	100.0
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	100.0
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	100.0
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	100.0
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	100.0
PRK05802	320	hypothetical protein; Provisional	100.0
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	100.0
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	100.0
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	100.0
cd06193	235	siderophore_interacting Siderophore interacting pr	99.98
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.97
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.96
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.96
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.96
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.94
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.93
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.93
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.93
PLN02292	702	ferric-chelate reductase	99.92
cd06203	398	methionine_synthase_red Human methionine synthase	99.92
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.91
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.91
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.89
PRK06214	530	sulfite reductase; Provisional	99.89
PLN02631	699	ferric-chelate reductase	99.89
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.88
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.88
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.83
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.82
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	99.79
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.78
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	99.77
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.74
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	99.66
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	99.6
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.5
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.13
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	98.89
PF04954	119	SIP: Siderophore-interacting protein; InterPro: IP	98.24
PLN02631	699	ferric-chelate reductase	85.3
PLN02844	722	oxidoreductase/ferric-chelate reductase	85.04
PLN02292	702	ferric-chelate reductase	84.15

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=100.00  E-value=3.2e-40  Score=301.09  Aligned_cols=227  Identities=19%  Similarity=0.377  Sum_probs=196.0

Q ss_pred             CCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      +..+..++|++++.++++++.++|+.++..  ....|+||||++|++++...+|+|||++.|..   ++.++|+||.++ 
T Consensus       103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~---~~~l~~~ik~~~~  177 (340)
T PRK11872        103 DTLKISGVVTAVELVSETTAILHLDASAHG--RQLDFLPGQYARLQIPGTDDWRSYSFANRPNA---TNQLQFLIRLLPD  177 (340)
T ss_pred             ccceeeEEEEEEEecCCCeEEEEEEcCCCC--CccCcCCCCEEEEEeCCCCceeecccCCCCCC---CCeEEEEEEECCC
Confidence            445678999999999999999999875321  23578999999999987666899999999865   789999999975 


Q ss_pred             CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |.+|+||+ ++++||+|.++||+|+ |.++.     ..++++|||||+||||++++++++...+...+++|+|++|+.++
T Consensus       178 G~~s~~L~~~l~~G~~v~i~gP~G~-f~l~~-----~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d  251 (340)
T PRK11872        178 GVMSNYLRERCQVGDEILFEAPLGA-FYLRE-----VERPLVFVAGGTGLSAFLGMLDELAEQGCSPPVHLYYGVRHAAD  251 (340)
T ss_pred             CcchhhHhhCCCCCCEEEEEcCcce-eEeCC-----CCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcEEEEEecCChHH
Confidence            57899997 5999999999999998 55542     45799999999999999999999987665678999999999999


Q ss_pred             cccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710          211 MAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK  288 (293)
Q Consensus       211 ~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~  288 (293)
                      ++|.++|++|+.  .+++++.+++++++.|.+..|++++.+.+..  ....+..+|+|||+.|++.+.+.|++.|+++++
T Consensus       252 l~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~--l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~  329 (340)
T PRK11872        252 LCELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQ--LRDQAFDMYLCGPPPMVEAVKQWLDEQALENYR  329 (340)
T ss_pred             hccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhh--cCcCCCEEEEeCCHHHHHHHHHHHHHcCCCHHH
Confidence            999999999976  4899999999888889899999998876532  223456799999999999999999999999999


Q ss_pred             eecc
Q 022710          289 ILKN  292 (293)
Q Consensus       289 I~~~  292 (293)
                      ||++
T Consensus       330 i~~E  333 (340)
T PRK11872        330 LYYE  333 (340)
T ss_pred             EEEe
Confidence            9986

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=100.00  E-value=1.3e-39  Score=280.87  Aligned_cols=218  Identities=26%  Similarity=0.507  Sum_probs=188.9

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHh
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEV  137 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~  137 (293)
                      ++|++++.+++++++++|+.++     ...|+||||++|.+++. ..|+|||++.+..   ++.++|+||.++ |.+|++
T Consensus         1 ~~v~~~~~~t~~~~~l~l~~~~-----~~~~~pGQ~v~l~~~~~-~~r~ySi~s~~~~---~~~l~~~vk~~~~G~~s~~   71 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPA-----PLDFLAGQYLDLLLDDG-DKRPFSIASAPHE---DGEIELHIRAVPGGSFSDY   71 (224)
T ss_pred             CEEEEEEeCCCceEEEEEecCC-----CcccCCCCEEEEEcCCC-CceeeecccCCCC---CCeEEEEEEecCCCccHHH
Confidence            5799999999999999998653     25789999999999863 5799999999865   789999999986 678988


Q ss_pred             hhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 022710          138 LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK  216 (293)
Q Consensus       138 L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~  216 (293)
                      |++ +++||+|.++||+|. |.+..    +..++++|||||+||||++++++++...+...++.|+|++|+.++++|+++
T Consensus        72 l~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~  146 (224)
T cd06189          72 VFEELKENGLVRIEGPLGD-FFLRE----DSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDEL  146 (224)
T ss_pred             HHHhccCCCEEEEecCCcc-EEecc----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHH
Confidence            875 999999999999998 54432    247789999999999999999999987666678999999999999999999


Q ss_pred             HHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          217 FKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       217 l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      |++|.++  +++++.+++++++.|.+..|++++.+.+.  ..+..+..+|+|||+.|++++.+.|++.|+++++||++
T Consensus       147 l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~--~~~~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e  222 (224)
T cd06189         147 LEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLED--FPDLSDFDVYACGSPEMVYAARDDFVEKGLPEENFFSD  222 (224)
T ss_pred             HHHHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhh--ccCccccEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence            9999874  78888888988777888889998877663  22345678999999999999999999999999999987

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=100.00  E-value=1.4e-39  Score=283.07  Aligned_cols=226  Identities=27%  Similarity=0.434  Sum_probs=191.0

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~  134 (293)
                      ...++|.+++.++++++.++|+.+++.   ...|+||||+.|++++....|+|||++.+.+   ++.++|+||.++ |.+
T Consensus         6 ~~~~~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~i~~~~~G~~   79 (238)
T cd06211           6 DFEGTVVEIEDLTPTIKGVRLKLDEPE---EIEFQAGQYVNLQAPGYEGTRAFSIASSPSD---AGEIELHIRLVPGGIA   79 (238)
T ss_pred             EEeEEEEEEEecCCCEEEEEEEcCCCC---cCccCCCCeEEEEcCCCCCccccccCCCCCC---CCEEEEEEEECCCCcc
Confidence            457999999999999999999976532   2478999999999987656799999999865   789999999874 689


Q ss_pred             hHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 022710          135 AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY  213 (293)
Q Consensus       135 s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~  213 (293)
                      |++|+ ++++||+|.++||+|+ |.+..    +..+++||||||+||||++++++++...+...++.|+|++|+.++++|
T Consensus        80 s~~l~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~  154 (238)
T cd06211          80 TTYVHKQLKEGDELEISGPYGD-FFVRD----SDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYY  154 (238)
T ss_pred             hhhHhhcCCCCCEEEEECCccc-eEecC----CCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhcc
Confidence            99997 6999999999999998 43432    245799999999999999999999986665578999999999999999


Q ss_pred             HHHHHHHHhC--CcEEEEEEecC--CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710          214 QDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI  289 (293)
Q Consensus       214 ~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I  289 (293)
                      .++|++|+..  +++++++++++  ++.|.+..|++++.+.+.. ..+..+..+|+|||+.|++.+.+.|.+.|+++++|
T Consensus       155 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~-~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i  233 (238)
T cd06211         155 LDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKHF-KNDFRGHKAYLCGPPPMIDACIKTLMQGRLFERDI  233 (238)
T ss_pred             HHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHHHHHHhc-ccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHc
Confidence            9999999864  78888888875  3467778899988765521 11335678999999999999999999999999999


Q ss_pred             eccC
Q 022710          290 LKNF  293 (293)
Q Consensus       290 ~~~~  293 (293)
                      |++.
T Consensus       234 ~~e~  237 (238)
T cd06211         234 YYEK  237 (238)
T ss_pred             cccC
Confidence            9873

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=100.00  E-value=1e-39  Score=291.45  Aligned_cols=229  Identities=25%  Similarity=0.442  Sum_probs=187.0

Q ss_pred             CCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCC
Q 022710           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG  132 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G  132 (293)
                      +..|..++|++++++++++..++|++..+.......|+||||++|++++.+. ++|||++.|..   ++.++|+||.. |
T Consensus         2 ~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~-~pySias~p~~---~~~l~l~Ik~~-G   76 (289)
T PRK08345          2 PYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE-VPISICSSPTR---KGFFELCIRRA-G   76 (289)
T ss_pred             CcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCc-eeeEecCCCCC---CCEEEEEEEeC-C
Confidence            5568899999999999998888887654321123468999999999986443 68999999865   78999999987 9


Q ss_pred             cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCcccc
Q 022710          133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRM  211 (293)
Q Consensus       133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~  211 (293)
                      .+|++|+++++||+|.++||+|.+|.++.    ...++++||||||||||++++++++++.. ...+++|+|++|+.+++
T Consensus        77 ~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~  152 (289)
T PRK08345         77 RVTTVIHRLKEGDIVGVRGPYGNGFPVDE----MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDL  152 (289)
T ss_pred             hHHHHHHhCCCCCEEEEeCCCCCCCCccc----ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHh
Confidence            99999999999999999999998775542    23568999999999999999999987654 45799999999999999


Q ss_pred             ccHHHHHHHHh--CCcEEEEEEecCCCCCCc------------cccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHH
Q 022710          212 AYQDKFKEWES--SGVKIVPVLSQPDGNWSG------------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS  277 (293)
Q Consensus       212 ~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~------------~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~  277 (293)
                      +|+++|++|+.  .+++++.++++++ .|.+            ..|++.+.+.+.  ..+..+..+|+|||++|++.+.+
T Consensus       153 ~~~deL~~l~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~~~~~~vyiCGP~~m~~~v~~  229 (289)
T PRK08345        153 LFYDELIKDLAEAENVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDLFREA--NTDPKNTYAAICGPPVMYKFVFK  229 (289)
T ss_pred             hHHHHHHHHHhcCCCEEEEEEecCCC-CCcCccccccccccccccCchhhhhhhc--CCCccccEEEEECCHHHHHHHHH
Confidence            99999999965  3788888888743 2321            246666665542  23345678999999999999999


Q ss_pred             HHHHcCCCccCeeccC
Q 022710          278 IVLAEGVSSEKILKNF  293 (293)
Q Consensus       278 ~L~~~Gv~~~~I~~~~  293 (293)
                      .|++.|+++++||+++
T Consensus       230 ~L~~~Gv~~~~i~~~l  245 (289)
T PRK08345        230 ELINRGYRPERIYVTL  245 (289)
T ss_pred             HHHHcCCCHHHEEEEe
Confidence            9999999999999863

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=100.00  E-value=1.9e-39  Score=280.45  Aligned_cols=219  Identities=21%  Similarity=0.428  Sum_probs=188.7

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~  136 (293)
                      .++|++++.+++++++++|+.++.   ....|+||||++|++++....|+|||++.|.    ++.++|+||.++ |.+|+
T Consensus         3 ~~~V~~~~~~t~~~~~l~l~~~~~---~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~----~~~i~~~i~~~~~G~~s~   75 (228)
T cd06209           3 EATVTEVERLSDSTIGLTLELDEA---GALAFLPGQYVNLQVPGTDETRSYSFSSAPG----DPRLEFLIRLLPGGAMSS   75 (228)
T ss_pred             eEEEEEEEEcCCCeEEEEEEcCCC---CcCccCCCCEEEEEeCCCCcccccccccCCC----CCeEEEEEEEcCCCcchh
Confidence            689999999999999999997653   2357899999999998766789999999886    589999999864 78999


Q ss_pred             hhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710          137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (293)
Q Consensus       137 ~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (293)
                      ||++ +++||+|.++||+|. |.+..     ..++++|||||+||||++++++++.......+++|+|++|+.++++|.+
T Consensus        76 ~l~~~l~~G~~v~v~gP~G~-~~~~~-----~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~~~r~~~~~~~~~  149 (228)
T cd06209          76 YLRDRAQPGDRLTLTGPLGS-FYLRE-----VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELD  149 (228)
T ss_pred             hHHhccCCCCEEEEECCccc-ceecC-----CCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEEecCCHHHhccHH
Confidence            9997 999999999999998 43432     3478999999999999999999998666667899999999999999999


Q ss_pred             HHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          216 KFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       216 ~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      +|++|...  ++++++++++++. |.+..|++++.+.+.  .....+..+|+|||+.|++.+++.|++.|+++++|+++
T Consensus       150 ~l~~l~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~--~~~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E  225 (228)
T cd06209         150 RLEALAERLPGFSFRTVVADPDS-WHPRKGYVTDHLEAE--DLNDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYE  225 (228)
T ss_pred             HHHHHHHhCCCeEEEEEEcCCCc-cCCCcCCccHHHHHh--hccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeee
Confidence            99999864  7888888887654 667788998877653  22334678999999999999999999999999999987

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=100.00  E-value=2.3e-39  Score=281.34  Aligned_cols=226  Identities=19%  Similarity=0.402  Sum_probs=192.1

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccc-cccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDI-ASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s  135 (293)
                      .++|++++.++++++.++|+.++..++ ....|+||||++|++++...+|+|||++.|..   ++.++|+||..+ |.+|
T Consensus         3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~~~i~~~~~G~~s   79 (236)
T cd06210           3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNW---DGRLEFLIRLLPGGAFS   79 (236)
T ss_pred             eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCC---CCEEEEEEEEcCCCccc
Confidence            688999999999999999997543100 12578999999999997777899999999875   789999999875 6799


Q ss_pred             Hhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          136 EVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       136 ~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      +||++ +++||+|.++||+|+ |.++.    +..++++|||||+||||++++++++...+...+++|+|++|+.++++|.
T Consensus        80 ~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~  154 (236)
T cd06210          80 TYLETRAKVGQRLNLRGPLGA-FGLRE----NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYL  154 (236)
T ss_pred             hhhhhCcCCCCEEEEecCcce-eeecC----CCCccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecCCHHHhhhH
Confidence            99997 999999999999998 76652    2467899999999999999999998766556789999999999999999


Q ss_pred             HHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       215 ~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++|++|...  +++++++++++++.|.+..|++.+.+.+.. ........+|+|||+.|++.+++.|++.|+++++|+.+
T Consensus       155 ~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l-~~~~~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E  233 (236)
T cd06210         155 DELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDL-ASSDAKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYLE  233 (236)
T ss_pred             HHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhh-cccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence            999999864  789999988877778788889888766531 11223567999999999999999999999999999986

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=3.7e-39  Score=279.32  Aligned_cols=222  Identities=23%  Similarity=0.452  Sum_probs=189.3

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~  136 (293)
                      +++|.+++.+++++++++|+.+.+.   ...|+||||+.|++++.+..|+|||++.|.+   .+.++|+||.++ |.+|.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~~~G~~s~   75 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPE---PIKFFAGQYVDITVPGTEETRSFSMANTPAD---PGRLEFIIKKYPGGLFSS   75 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCC---cCCcCCCCeEEEEcCCCCcccccccCCCCCC---CCEEEEEEEECCCCchhh
Confidence            5789999999999999999976542   3578999999999987777899999999874   689999999975 57899


Q ss_pred             hhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710          137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (293)
Q Consensus       137 ~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (293)
                      ||++ +++||+|.+.||+|+ |.+..    +..++++|||||+||||++++++++...+...++.|+|++|+.++++|.+
T Consensus        76 ~l~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~  150 (232)
T cd06212          76 FLDDGLAVGDPVTVTGPYGT-CTLRE----SRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLE  150 (232)
T ss_pred             HHhhcCCCCCEEEEEcCccc-ceecC----CCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEeccchHHhccHH
Confidence            9986 999999999999998 44432    24679999999999999999999998766667899999999999999999


Q ss_pred             HHHHHHhC--CcEEEEEEecCC--CCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          216 KFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       216 ~l~~l~~~--~i~~~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      +|++|...  +++++++++++.  +.|.+..|++++.+.+.  ..+..+..+|+|||++|++.+.+.|++.|+++++||+
T Consensus       151 ~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~  228 (232)
T cd06212         151 EIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRN--EATLAGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFY  228 (232)
T ss_pred             HHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhh--ccCccCCEEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence            99999764  677887888753  45667788988866552  2333467899999999999999999999999999998


Q ss_pred             c
Q 022710          292 N  292 (293)
Q Consensus       292 ~  292 (293)
                      +
T Consensus       229 e  229 (232)
T cd06212         229 D  229 (232)
T ss_pred             c
Confidence            7

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>PRK08051 fre FMN reductase; Validated

Probab=100.00  E-value=5e-39  Score=278.60  Aligned_cols=221  Identities=20%  Similarity=0.347  Sum_probs=188.1

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCC-cc
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG-ST  134 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G-~~  134 (293)
                      +.+++|.+++.++++++.++|+.++     ...|+||||++|+++.. ..|+|||++.|..   ++.++|.||..++ ..
T Consensus         2 ~~~~~v~~i~~~~~~~~~l~l~~~~-----~~~~~pGQ~v~l~~~~~-~~r~ySias~p~~---~~~l~~~v~~~~~~~~   72 (232)
T PRK08051          2 TLSCKVTSVEAITDTVYRVRLVPEA-----PFSFRAGQYLMVVMGEK-DKRPFSIASTPRE---KGFIELHIGASELNLY   72 (232)
T ss_pred             eeEEEEEEEecCCCCeEEEEEecCC-----CCccCCCCEEEEEcCCC-cceeecccCCCCC---CCcEEEEEEEcCCCcc
Confidence            5689999999999999999997543     24789999999999753 5689999999864   7889999999763 44


Q ss_pred             hHhh-hcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 022710          135 AEVL-CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY  213 (293)
Q Consensus       135 s~~L-~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~  213 (293)
                      +.++ .++++||+|.+.||+|+++ +..    +..+++||||||+||||++++++++...+...++.++|++|+.++++|
T Consensus        73 ~~~~~~~l~~G~~v~v~gP~G~~~-~~~----~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~~~  147 (232)
T PRK08051         73 AMAVMERILKDGEIEVDIPHGDAW-LRE----ESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYWGGREEDHLYD  147 (232)
T ss_pred             hHHHHHHcCCCCEEEEEcCCCceE-ccC----CCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHhhh
Confidence            5555 5799999999999999844 331    246789999999999999999999987666789999999999999999


Q ss_pred             HHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH-HHcCCCccCee
Q 022710          214 QDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV-LAEGVSSEKIL  290 (293)
Q Consensus       214 ~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L-~~~Gv~~~~I~  290 (293)
                      .++|++|+.+  +++++.+++++++.|.+..|++.+.+.+.  ..+..+..+|+|||++|++.+.+.| ++.|+++++|+
T Consensus       148 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~  225 (232)
T PRK08051        148 LDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQD--FGSLAEYDIYIAGRFEMAKIARELFCRERGAREEHLF  225 (232)
T ss_pred             hHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhh--ccCcccCEEEEECCHHHHHHHHHHHHHHcCCCHHHee
Confidence            9999999874  78999998888888888889998877652  2233456899999999999999999 99999999999


Q ss_pred             cc
Q 022710          291 KN  292 (293)
Q Consensus       291 ~~  292 (293)
                      ++
T Consensus       226 ~e  227 (232)
T PRK08051        226 GD  227 (232)
T ss_pred             cc
Confidence            76

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=100.00  E-value=2.9e-39  Score=288.04  Aligned_cols=226  Identities=25%  Similarity=0.431  Sum_probs=188.7

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-----------------------------C--
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----------------------------G--  103 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-----------------------------~--  103 (293)
                      .+..++|++++.++++++.++|+.+++.   ...|+||||++|++++.                             +  
T Consensus         8 ~~~~~~v~~~~~~~~d~~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (283)
T cd06188           8 KKWECTVISNDNVATFIKELVLKLPSGE---EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEP   84 (283)
T ss_pred             ceEEEEEEEcccccchhhheEEecCCCc---eeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCc
Confidence            4557999999999999999999976532   24689999999999753                             1  


Q ss_pred             ceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEE
Q 022710          104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI  173 (293)
Q Consensus       104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivl  173 (293)
                      ..|+|||++.|..   ++.++|+||..          .|.+|+||+++++||+|.+.||+|. |.+.     +..+++||
T Consensus        85 ~~R~ySias~p~~---~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~l~-----~~~~~~vl  155 (283)
T cd06188          85 VSRAYSLANYPAE---EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGE-FFIK-----DTDREMVF  155 (283)
T ss_pred             cccccCcCCCCCC---CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECcccc-cccc-----CCCCcEEE
Confidence            2489999999975   78999999962          3789999999999999999999998 5444     25679999


Q ss_pred             EEeCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCC--CCCCccccccchH
Q 022710          174 FATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAA  248 (293)
Q Consensus       174 ia~GtGIaP~~sll~~~~~~~~-~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~--~~~~~~~g~v~~~  248 (293)
                      |||||||||+++|+++++..+. ..+++|+|++|+.++++|.++|++|...  +++++++++++.  +.|.+..|++++.
T Consensus       156 IAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~  235 (283)
T cd06188         156 IGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQV  235 (283)
T ss_pred             EEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHH
Confidence            9999999999999999865443 4789999999999999999999999864  788888888754  5677788999987


Q ss_pred             HHhhhcc--CCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          249 FSRAKKI--FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       249 ~~~~~~~--~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      +.+....  .+..+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus       236 ~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e  281 (283)
T cd06188         236 LLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFD  281 (283)
T ss_pred             HHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence            7664211  1234678999999999999999999999999999987

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=100.00  E-value=7.5e-39  Score=292.38  Aligned_cols=224  Identities=25%  Similarity=0.487  Sum_probs=191.8

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Cc
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GS  133 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~  133 (293)
                      .+.+++|++++.++++++.++|+.++.   ....|+||||++|++++ +..|+|||++.|..   .+.++|+||.++ |.
T Consensus       101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~---~~~~~~pGQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~ik~~~~G~  173 (339)
T PRK07609        101 KKLPCRVASLERVAGDVMRLKLRLPAT---ERLQYLAGQYIEFILKD-GKRRSYSIANAPHS---GGPLELHIRHMPGGV  173 (339)
T ss_pred             eEEEEEEEEEEcCCCcEEEEEEEcCCC---CCCccCCCCeEEEECCC-CceeeeecCCCCCC---CCEEEEEEEecCCCc
Confidence            466899999999999999999997542   23578999999999985 45799999999874   689999999875 68


Q ss_pred             chHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 022710          134 TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA  212 (293)
Q Consensus       134 ~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~  212 (293)
                      +|+||+ ++++||+|.++||+|. |.+..    +..+++|||||||||||++++++++...+...+++|+|++|+.++++
T Consensus       174 ~s~~l~~~l~~G~~v~v~gP~G~-~~~~~----~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl~  248 (339)
T PRK07609        174 FTDHVFGALKERDILRIEGPLGT-FFLRE----DSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDLY  248 (339)
T ss_pred             cHHHHHHhccCCCEEEEEcCcee-EEecC----CCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEecCChHHhc
Confidence            899997 6999999999999998 54442    35678999999999999999999998766667899999999999999


Q ss_pred             cHHHHHHHHhC--CcEEEEEEec--CCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710          213 YQDKFKEWESS--GVKIVPVLSQ--PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK  288 (293)
Q Consensus       213 ~~~~l~~l~~~--~i~~~~~~s~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~  288 (293)
                      +.+++++|..+  ++++++++++  +++.|.+..|++++.+.+.  ..+..+..+|+|||+.|++.+.+.|.+.|+++++
T Consensus       249 ~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~--~~~~~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~  326 (339)
T PRK07609        249 LSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED--FPDLSGHQVYACGSPVMVYAARDDFVAAGLPAEE  326 (339)
T ss_pred             cHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh--cccccCCEEEEECCHHHHHHHHHHHHHcCCCHHH
Confidence            99999999764  7888888887  3566878889999887663  2333467899999999999999999999999999


Q ss_pred             eecc
Q 022710          289 ILKN  292 (293)
Q Consensus       289 I~~~  292 (293)
                      ||++
T Consensus       327 i~~e  330 (339)
T PRK07609        327 FFAD  330 (339)
T ss_pred             eEEe
Confidence            9986

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=1.6e-38  Score=275.77  Aligned_cols=225  Identities=25%  Similarity=0.429  Sum_probs=190.7

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-CC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-VG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      |.+++|++++.+++++++++|+.++..   ...|+||||++|+++. .+  ..|+|||++.|.+   .+.++|+||..+ 
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~---~~~l~l~v~~~~~   74 (235)
T cd06217           1 WRVLRVTEIIQETPTVKTFRLAVPDGV---PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ---RGRVELTVKRVPG   74 (235)
T ss_pred             CceEEEEEEEecCCCeEEEEEECCCCC---cCCcCCcCeEEEEEecCCCceeeeeecccCCCCC---CCeEEEEEEEcCC
Confidence            789999999999999999999976532   2478999999999972 22  3599999999875   679999999875 


Q ss_pred             CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |.+|.||++ +++||.|.+.||+|. |.+..    ...++++|||||+||||++++++++...+...++.++|++++.++
T Consensus        75 G~~s~~l~~~l~~Gd~v~i~gP~G~-~~~~~----~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~~~~  149 (235)
T cd06217          75 GEVSPYLHDEVKVGDLLEVRGPIGT-FTWNP----LHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAED  149 (235)
T ss_pred             CcchHHHHhcCCCCCEEEEeCCcee-eEeCC----CCCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCCHHH
Confidence            678999985 899999999999998 76542    246789999999999999999999987666788999999999999


Q ss_pred             cccHHHHHHHHhC--CcEEEEEEecC-CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          211 MAYQDKFKEWESS--GVKIVPVLSQP-DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       211 ~~~~~~l~~l~~~--~i~~~~~~s~~-~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      ++|.++|.++..+  +++++++++++ ++.+.+..|++.+...+.. ..+..+..+|+|||++|++++.+.|++.|++++
T Consensus       150 ~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~  228 (235)
T cd06217         150 VIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAEL-VPPLAGRRVYVCGPPAFVEAATRLLLELGVPRD  228 (235)
T ss_pred             hhHHHHHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhh-CCCccCCEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence            9999999999873  68888888876 4566677899987765432 223456899999999999999999999999999


Q ss_pred             Ceecc
Q 022710          288 KILKN  292 (293)
Q Consensus       288 ~I~~~  292 (293)
                      +|+++
T Consensus       229 ~i~~E  233 (235)
T cd06217         229 RIRTE  233 (235)
T ss_pred             HEeec
Confidence            99986

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=2.1e-38  Score=276.15  Aligned_cols=232  Identities=21%  Similarity=0.315  Sum_probs=203.8

Q ss_pred             ccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEE
Q 022710           50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLV  127 (293)
Q Consensus        50 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~V  127 (293)
                      -.++..|.++++++++.++.|+..++|.++.+.  .......||||.++++..+  ..|+||+.+.+.+   .|.++|+|
T Consensus        45 ~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~--~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~---~g~~~l~V  119 (286)
T KOG0534|consen   45 LVDPESYYPFRLIDKTELSHDTSLFRFVLPSAD--HVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD---KGYFDLVV  119 (286)
T ss_pred             ccCCcceEEEEEEEEEeccCCceeEEEecCCch--hccCcccceEEEEEecCCCcEEEEecCCccCccc---cceEEEEE
Confidence            345557999999999999999999999987544  3467899999999999654  4799999999985   69999999


Q ss_pred             EEeC-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEcc
Q 022710          128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGA  205 (293)
Q Consensus       128 k~~~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~  205 (293)
                      |.+. |.+|+||++|++||+|+++||.|+ |.+++    +.++++.|||||||||||++++++++... +.+++.|+|++
T Consensus       120 K~Y~~G~mS~~l~~LkiGd~ve~rGP~G~-~~~~~----~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N  194 (286)
T KOG0534|consen  120 KVYPKGKMSQHLDSLKIGDTVEFRGPIGE-FKYDP----QKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYAN  194 (286)
T ss_pred             EeccCCcccHHHhcCCCCCEEEEecCccc-eEecC----CCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEec
Confidence            9987 799999999999999999999999 77763    35899999999999999999999999764 47899999999


Q ss_pred             CCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccCCCC-CcEEEEeCChHHHH-HHHHHHH
Q 022710          206 RNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAE-EVTSIVL  280 (293)
Q Consensus       206 r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~vCGp~~~~~-~~~~~L~  280 (293)
                      ++.+|++++++|++++..   ++++++++++++..|.+..|++.+.+..+....+.. ++.+++|||++|++ .+...|+
T Consensus       195 ~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le  274 (286)
T KOG0534|consen  195 KTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQGNLE  274 (286)
T ss_pred             CCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHH
Confidence            999999999999999884   789999999999999999999999887764444444 59999999999998 5888888


Q ss_pred             HcCCCccCeec
Q 022710          281 AEGVSSEKILK  291 (293)
Q Consensus       281 ~~Gv~~~~I~~  291 (293)
                      +.|+++++|++
T Consensus       275 ~Lg~~~~~vf~  285 (286)
T KOG0534|consen  275 KLGYNEDQVFV  285 (286)
T ss_pred             hcCCChHhEEe
Confidence            89999999875

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=100.00  E-value=2.9e-38  Score=276.19  Aligned_cols=226  Identities=23%  Similarity=0.363  Sum_probs=190.6

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC----CceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----GKPTFLAIASPPSFASASGAFEFLVKS  129 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~----~~~r~ySi~s~p~~~~~~~~~~~~Vk~  129 (293)
                      ..|..++|++++.+++++++++|+.++...  ...|+||||+.|+++..    ...|+|||++.|.    ++.++|.||.
T Consensus         4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~l~~~ik~   77 (247)
T cd06184           4 RGFRPFVVARKVAESEDITSFYLEPADGGP--LPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN----GDYYRISVKR   77 (247)
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC----CCeEEEEEEE
Confidence            468999999999999999999999754321  24789999999999643    3579999999986    5699999998


Q ss_pred             eC-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710          130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (293)
Q Consensus       130 ~~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~  207 (293)
                      .+ |.+|+||++ +++||+|.|.||+|. |.++.    +..++++||||||||||++++++++...+...++.|+|++|+
T Consensus        78 ~~~G~~s~~l~~~~~~Gd~v~i~gP~G~-~~~~~----~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~i~l~~~~r~  152 (247)
T cd06184          78 EPGGLVSNYLHDNVKVGDVLEVSAPAGD-FVLDE----ASDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARN  152 (247)
T ss_pred             cCCCcchHHHHhcCCCCCEEEEEcCCCc-eECCC----CCCCcEEEEeccccHhHHHHHHHHHHhcCCCCcEEEEEEcCc
Confidence            75 789999997 999999999999998 76652    256789999999999999999999986656788999999999


Q ss_pred             ccccccHHHHHHHHhC--CcEEEEEEecCCCCC----CccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHH
Q 022710          208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLA  281 (293)
Q Consensus       208 ~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~----~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~  281 (293)
                      .++++|+++|++|...  +++++++++++.+.+    .+..|+++......  .....+..+|+|||++|++++.+.|++
T Consensus       153 ~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~v~icGp~~m~~~v~~~l~~  230 (247)
T cd06184         153 SAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRE--LLLPADADFYLCGPVPFMQAVREGLKA  230 (247)
T ss_pred             hhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHhh--ccCCCCCEEEEECCHHHHHHHHHHHHH
Confidence            9999999999999864  889999988765443    45568887654442  223457899999999999999999999


Q ss_pred             cCCCccCeecc
Q 022710          282 EGVSSEKILKN  292 (293)
Q Consensus       282 ~Gv~~~~I~~~  292 (293)
                      .|+++++|+++
T Consensus       231 ~G~~~~~i~~e  241 (247)
T cd06184         231 LGVPAERIHYE  241 (247)
T ss_pred             cCCCHHHeeee
Confidence            99999999986

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=100.00  E-value=2.8e-38  Score=272.27  Aligned_cols=217  Identities=27%  Similarity=0.477  Sum_probs=186.2

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC-ceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhh
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVL  138 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~-~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L  138 (293)
                      |++++.++++++.++|+.++.     ..|+||||+.|++++.. ..|+|||++.|.+   .+.++|+||..+ |.+|+||
T Consensus         1 v~~~~~~~~~~~~~~l~~~~~-----~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~---~~~~~~~i~~~~~G~~s~~l   72 (224)
T cd06187           1 VVSVERLTHDIAVVRLQLDQP-----LPFWAGQYVNVTVPGRPRTWRAYSPANPPNE---DGEIEFHVRAVPGGRVSNAL   72 (224)
T ss_pred             CeeeeecCCCEEEEEEEeCCC-----CCcCCCceEEEEcCCCCCcceeccccCCCCC---CCEEEEEEEeCCCCcchHHH
Confidence            467899999999999987543     46899999999998654 5799999999874   689999999874 7899999


Q ss_pred             hc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710          139 CG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (293)
Q Consensus       139 ~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (293)
                      ++ +++||+|.+.||+|. |.+..    +.+++++|||||+||||++++++++...+...++.++|++++.++++|.++|
T Consensus        73 ~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~~~~~~l  147 (224)
T cd06187          73 HDELKVGDRVRLSGPYGT-FYLRR----DHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGL  147 (224)
T ss_pred             hhcCccCCEEEEeCCccc-eEecC----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhhcChHHH
Confidence            97 999999999999998 54432    2467899999999999999999999866666799999999999999999999


Q ss_pred             HHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          218 KEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       218 ~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++|...  +++++++++++++.|.+..|++.+.+.+.  ..+..++.+|+|||++|++.+.+.|++.|+++++|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e  222 (224)
T cd06187         148 LALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRD--GPDWADHDIYICGPPAMVDATVDALLARGAPPERIHFD  222 (224)
T ss_pred             HHHHHhCCCeEEEEEeCCCCCccCCCcccHHHHHHHh--ccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence            999864  67888888876666777889999887652  22345688999999999999999999999999999986

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=100.00  E-value=3.5e-38  Score=273.03  Aligned_cols=220  Identities=19%  Similarity=0.305  Sum_probs=184.6

Q ss_pred             eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (293)
Q Consensus        60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~  136 (293)
                      +|++++.+++++++++|+.++..   ...|+||||++|+++..  ..+|+|||++.+.    .+.++|.||.++ |.+|+
T Consensus         2 ~v~~i~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~l~~~v~~~~~G~~s~   74 (231)
T cd06191           2 RVAEVRSETPDAVTIVFAVPGPL---QYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA----PDEISITVKRVPGGRVSN   74 (231)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCC---CCCCCCCCeEEEEEecCCeEEeeeeeccCCCC----CCeEEEEEEECCCCccch
Confidence            68999999999999999975432   24689999999998643  3468999999886    688999999876 67999


Q ss_pred             hhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710          137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (293)
Q Consensus       137 ~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (293)
                      ||+ ++++||+|.+.||+|+ |.++.    +..++++||||||||||++++++++.......++.++|++|+.++++|.+
T Consensus        75 ~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~  149 (231)
T cd06191          75 YLREHIQPGMTVEVMGPQGH-FVYQP----QPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQ  149 (231)
T ss_pred             HHHhcCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHHH
Confidence            998 6999999999999998 76652    24678999999999999999999998666678999999999999999999


Q ss_pred             HHHHHHhC--CcEEEEEEecCC--CCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          216 KFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       216 ~l~~l~~~--~i~~~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      +|++|+..  ++++++++++++  +.|.+..+++.+.+.+. ...+..+..+|+|||+.|++.+.+.|++.|+++++|++
T Consensus       150 el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~  228 (231)
T cd06191         150 ELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAA-LIPDRLEREAFICGPAGMMDAVETALKELGMPPERIHT  228 (231)
T ss_pred             HHHHHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHH-hCccccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence            99999863  889999888753  34556667777655542 22233457899999999999999999999999999998


Q ss_pred             c
Q 022710          292 N  292 (293)
Q Consensus       292 ~  292 (293)
                      |
T Consensus       229 E  229 (231)
T cd06191         229 E  229 (231)
T ss_pred             c
Confidence            7

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=5.4e-38  Score=271.69  Aligned_cols=222  Identities=21%  Similarity=0.338  Sum_probs=188.0

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s  135 (293)
                      .+|++++.+++++++++|+.++..   ...|+||||+.|+++..+  ..|+|||++.|.+   .+.++|+||..+ |.+|
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~s   74 (231)
T cd06215           1 LRCVKIIQETPDVKTFRFAAPDGS---LFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR---PDSLSITVKRVPGGLVS   74 (231)
T ss_pred             CeEEEEEEcCCCeEEEEEECCCCC---cCCcCCCCeEEEEEecCCCeEEEeeecccCCCC---CCcEEEEEEEcCCCcch
Confidence            378999999999999999976432   257899999999997544  4689999999875   678999999876 6899


Q ss_pred             Hhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          136 EVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       136 ~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      +||+ ++++||++.+.||+|. |.+..    ...+++||||||+||||++++++++.+.+...+++++|++|+.++++|.
T Consensus        75 ~~l~~~~~~G~~v~i~gP~G~-f~~~~----~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~  149 (231)
T cd06215          75 NWLHDNLKVGDELWASGPAGE-FTLID----HPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFA  149 (231)
T ss_pred             HHHHhcCCCCCEEEEEcCcce-eEeCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHH
Confidence            9997 6999999999999998 76542    2468999999999999999999999876666789999999999999999


Q ss_pred             HHHHHHHh--CCcEEEEEEecCCCC-CCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          215 DKFKEWES--SGVKIVPVLSQPDGN-WSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       215 ~~l~~l~~--~~i~~~~~~s~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      ++|++|..  .+++++++++++++. |.+..|++++...+. ...+..+..+|+|||+.|++.+.+.|++.|+++++|++
T Consensus       150 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~  228 (231)
T cd06215         150 DELEELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLAL-LVPDLKERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQ  228 (231)
T ss_pred             HHHHHHHHHCCCeEEEEEEccCCCCcccccCCcCCHHHHHH-hcCCccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence            99999987  478888888887664 777889998755443 22333457899999999999999999999999999998


Q ss_pred             c
Q 022710          292 N  292 (293)
Q Consensus       292 ~  292 (293)
                      +
T Consensus       229 e  229 (231)
T cd06215         229 E  229 (231)
T ss_pred             e
Confidence            7

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=6.3e-38  Score=270.79  Aligned_cols=217  Identities=22%  Similarity=0.428  Sum_probs=185.1

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~  136 (293)
                      +++|++++.+++++++++|+.+.     ...|+||||+.|++++....|+|||++.|..   .+.++|+||..+ |.+|+
T Consensus         2 ~~~v~~~~~~t~~~~~~~l~~~~-----~~~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~---~~~l~~~vk~~~~G~~s~   73 (227)
T cd06213           2 RGTIVAQERLTHDIVRLTVQLDR-----PIAYKAGQYAELTLPGLPAARSYSFANAPQG---DGQLSFHIRKVPGGAFSG   73 (227)
T ss_pred             eEEEEEEeecCCCEEEEEEecCC-----CCCcCCCCEEEEEeCCCCcccccccCCCCCC---CCEEEEEEEECCCCcchH
Confidence            57899999999999999998642     2468999999999986666899999999874   689999999865 68999


Q ss_pred             hhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710          137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (293)
Q Consensus       137 ~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (293)
                      +|. .+++||+|.++||+|. |.+..     ..++++|||||+||||++++++++.+.+...++.++|++|+.++++|.+
T Consensus        74 ~l~~~l~~G~~v~i~gP~G~-~~~~~-----~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~~~~~~~~~  147 (227)
T cd06213          74 WLFGADRTGERLTVRGPFGD-FWLRP-----GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALD  147 (227)
T ss_pred             HHHhcCCCCCEEEEeCCCcc-eEeCC-----CCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhccHH
Confidence            995 5999999999999998 54541     3478999999999999999999998766667899999999999999999


Q ss_pred             HHHHHHhC---CcEEEEEEecCC--CCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCee
Q 022710          216 KFKEWESS---GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL  290 (293)
Q Consensus       216 ~l~~l~~~---~i~~~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~  290 (293)
                      +|++++..   +++++.+++++.  ..|.+..|++.+.+.+.  .  ..+..+|+|||++|++.+.+.|++.|+++++||
T Consensus       148 ~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~--~--~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~  223 (227)
T cd06213         148 EIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEV--L--LAATEAYLCGPPAMIDAAIAVLRALGIAREHIH  223 (227)
T ss_pred             HHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhh--c--cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEe
Confidence            99998853   688888887753  34667778888876552  2  356789999999999999999999999999999


Q ss_pred             cc
Q 022710          291 KN  292 (293)
Q Consensus       291 ~~  292 (293)
                      .+
T Consensus       224 ~e  225 (227)
T cd06213         224 AD  225 (227)
T ss_pred             cc
Confidence            86

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=100.00  E-value=7.4e-38  Score=280.53  Aligned_cols=238  Identities=19%  Similarity=0.275  Sum_probs=192.5

Q ss_pred             hhccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCCCCCC
Q 022710           48 AVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASG  121 (293)
Q Consensus        48 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~~~~~  121 (293)
                      .+.+++..|..++|++++.+++++..++|+..++.  ....|+||||+.|+++..      ...|+||+++.|.+   ++
T Consensus        25 ~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~--~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~---~~   99 (300)
T PTZ00319         25 PVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPT--QRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE---KG   99 (300)
T ss_pred             ccccCcCceEEEEEEEEEEcCCCceEEEEECCCCc--ccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc---CC
Confidence            56678889999999999999999999999975432  235789999999999743      23689999998865   78


Q ss_pred             eEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCC----CCC-------CCCCeEEEEEeCcch
Q 022710          122 AFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRI----QPP-------DEYPTVLIFATGSGI  180 (293)
Q Consensus       122 ~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~----~p~-------~~~~~ivlia~GtGI  180 (293)
                      .++|+||.+          .|.+|+||+++++||+|.++||+|. |.+...    .+.       ...++++||||||||
T Consensus       100 ~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGI  178 (300)
T PTZ00319        100 YVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGK-FEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGI  178 (300)
T ss_pred             EEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEcccee-eEecCCcceeeccccccccccccceEEEEecCccc
Confidence            999999986          3799999999999999999999998 544310    000       123589999999999


Q ss_pred             hHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHHHHhC-CcEEEEEEec-CCCCCCccccccchHHHhhhcc-C
Q 022710          181 SPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKEWESS-GVKIVPVLSQ-PDGNWSGETGYVQAAFSRAKKI-F  256 (293)
Q Consensus       181 aP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~i~~~~~~s~-~~~~~~~~~g~v~~~~~~~~~~-~  256 (293)
                      ||++++++++.... +..+++|+|++|+.++++|.++|++++.. ++++++++++ +++.|.+..|++++.+.++... .
T Consensus       179 aP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~  258 (300)
T PTZ00319        179 TPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVP  258 (300)
T ss_pred             CHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHhhCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCc
Confidence            99999999987653 44689999999999999999999987543 7888888887 4456777889999876653211 1


Q ss_pred             -----CCCCcEEEEeCChHHHH-HHHHHHHHcCCCccCeec
Q 022710          257 -----NPQGTGVVLCGQKQMAE-EVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       257 -----~~~~~~v~vCGp~~~~~-~~~~~L~~~Gv~~~~I~~  291 (293)
                           +..+..+|+|||+.|++ .+.+.|++.|++.++||.
T Consensus       259 ~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~~  299 (300)
T PTZ00319        259 DPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGYTADNMFT  299 (300)
T ss_pred             cccccccCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence                 11357899999999999 578899999999999985

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=100.00  E-value=5.8e-38  Score=275.22  Aligned_cols=220  Identities=27%  Similarity=0.546  Sum_probs=186.8

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhc
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG  140 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~  140 (293)
                      |.+++.+++++..++|+++.+.. ....|+||||+.|+++..+. ++|||++.|..   ++.++|+||.. |.+|++|++
T Consensus         1 v~~i~~~t~~v~~~~l~~~~~~~-~~~~~~pGQ~i~l~~~~~~~-~pySi~s~~~~---~~~l~~~Ik~~-G~~S~~L~~   74 (253)
T cd06221           1 IVEVVDETEDIKTFTLRLEDDDE-ELFTFKPGQFVMLSLPGVGE-APISISSDPTR---RGPLELTIRRV-GRVTEALHE   74 (253)
T ss_pred             CceEEeccCCceEEEEEeCCCcc-ccCCcCCCCEEEEEcCCCCc-cceEecCCCCC---CCeEEEEEEeC-ChhhHHHHc
Confidence            46789999999999999765421 12578999999999986554 78999999975   78999999987 899999999


Q ss_pred             CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHH
Q 022710          141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKE  219 (293)
Q Consensus       141 l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~  219 (293)
                      +++||+|.++||+|++|.++.    ...+++||||+|+||||+++|++++.... ...+++|+|++|+.++++|+++|++
T Consensus        75 l~~G~~v~i~gP~G~~f~~~~----~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~  150 (253)
T cd06221          75 LKPGDTVGLRGPFGNGFPVEE----MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKE  150 (253)
T ss_pred             CCCCCEEEEECCcCCCccccc----ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHH
Confidence            999999999999999775431    24689999999999999999999998643 4578999999999999999999999


Q ss_pred             HHhC-CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          220 WESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       220 l~~~-~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      |..+ +++++++++++.+.|.+..|++++.+.+.  .....+..+|+|||++|++.+.+.|++.|+++++||..
T Consensus       151 l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~~~  222 (253)
T cd06221         151 WAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPEL--TLDPDNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVS  222 (253)
T ss_pred             HHhcCCeEEEEEeCCCCCCccCCccccchhHHhc--CCCcCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEe
Confidence            9875 78888888887777777788998876653  23335678999999999999999999999999999975

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=100.00  E-value=6.1e-38  Score=271.69  Aligned_cols=217  Identities=23%  Similarity=0.438  Sum_probs=182.5

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhhh
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC  139 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L~  139 (293)
                      |++++.+++++++++|+.+++     ..|+||||+.|++++....|+|||++.|..   .+.++|+||..+ |.+|++|+
T Consensus         1 ~~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~~~~~vk~~~~G~~s~~l~   72 (232)
T cd06190           1 LVDVRELTHDVAEFRFALDGP-----ADFLPGQYALLALPGVEGARAYSMANLANA---SGEWEFIIKRKPGGAASNALF   72 (232)
T ss_pred             CCceEEcCCCEEEEEEEcCCc-----cccCCCCEEEEECCCCCcccCccCCcCCCC---CCEEEEEEEEcCCCcchHHHh
Confidence            467889999999999997542     368999999999987657799999998874   689999999875 67899998


Q ss_pred             c-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc--CCCCcEEEEEccCCccccccHHH
Q 022710          140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS--KERSDVRLYYGARNLKRMAYQDK  216 (293)
Q Consensus       140 ~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~--~~~~~v~l~~~~r~~~~~~~~~~  216 (293)
                      + +++||+|.++||+|.++ +.    ++..++++|||||+||||++++++++.+.  ....+++|+|++|+.++++|.++
T Consensus        73 ~~~~~g~~v~v~gP~G~~~-~~----~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~e  147 (232)
T cd06190          73 DNLEPGDELELDGPYGLAY-LR----PDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDE  147 (232)
T ss_pred             hcCCCCCEEEEECCcccce-ec----CCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHH
Confidence            6 79999999999999854 32    13467899999999999999999999865  44679999999999999999999


Q ss_pred             HHHHHhC--CcEEEEEEecCCC----CCCccccccchHHHhhhccCC-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ccC
Q 022710          217 FKEWESS--GVKIVPVLSQPDG----NWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAEGVS-SEK  288 (293)
Q Consensus       217 l~~l~~~--~i~~~~~~s~~~~----~~~~~~g~v~~~~~~~~~~~~-~~~~~v~vCGp~~~~~~~~~~L~~~Gv~-~~~  288 (293)
                      |++|...  +++++++++++..    .|.+..|++++.+.+.  ..+ ..+..+|+|||+.|++.+.+.|.+.|+. +++
T Consensus       148 l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~  225 (232)
T cd06190         148 LSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEAT--LGDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQ  225 (232)
T ss_pred             HHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhh--ccCCccccEEEEECCHHHHHHHHHHHHHhCCCChHh
Confidence            9999874  7888888876543    3677889998876653  222 4568999999999999999999998754 999


Q ss_pred             eecc
Q 022710          289 ILKN  292 (293)
Q Consensus       289 I~~~  292 (293)
                      ||++
T Consensus       226 i~~e  229 (232)
T cd06190         226 IHFD  229 (232)
T ss_pred             eeec
Confidence            9987

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=1.1e-37  Score=267.69  Aligned_cols=212  Identities=19%  Similarity=0.332  Sum_probs=177.1

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC---ceeeEEecCCCCCCCCCCeEEEEEEEeC--C
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG---KPTFLAIASPPSFASASGAFEFLVKSVA--G  132 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~r~ySi~s~p~~~~~~~~~~~~Vk~~~--G  132 (293)
                      .++|++++.++++++.++|+.++.     ..|+||||++|+++..+   ..|+|||++.|.    ++.++|+||.++  |
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~----~~~l~~~vk~~~~~g   72 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPEG-----YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE----DDVLEFVIKSYPDHD   72 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCCc-----CCCCCCCEEEEEeeCCCCCccccccccccCCC----CCeEEEEEEEcCCCC
Confidence            578999999999999999986432     47899999999997543   579999999986    689999999875  5


Q ss_pred             cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 022710          133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA  212 (293)
Q Consensus       133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~  212 (293)
                      .+|++|+++++||+|.++||+|+ |.+        .+++||||+||||||++++++++...+...+++|+|++|+.++++
T Consensus        73 ~~s~~l~~l~~G~~v~i~gP~G~-~~~--------~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~  143 (218)
T cd06196          73 GVTEQLGRLQPGDTLLIEDPWGA-IEY--------KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDII  143 (218)
T ss_pred             cHhHHHHhCCCCCEEEEECCccc-eEe--------cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEEecCCHHHHh
Confidence            78999999999999999999998 533        246999999999999999999998766667899999999999999


Q ss_pred             cHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       213 ~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      |.++|++|.  +++++++++++... ....|++++.+.++  ........+|+|||+.|++.+.+.|++.|+++++|+++
T Consensus       144 ~~~el~~l~--~~~~~~~~s~~~~~-~~~~g~~~~~~l~~--~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~E  218 (218)
T cd06196         144 LKDELEKML--GLKFINVVTDEKDP-GYAHGRIDKAFLKQ--HVTDFNQHFYVCGPPPMEEAINGALKELGVPEDSIVFE  218 (218)
T ss_pred             hHHHHHHhh--cceEEEEEcCCCCC-CeeeeEECHHHHHH--hcCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecC
Confidence            999999996  56777777764332 12467887655543  22233468999999999999999999999999999986

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=100.00  E-value=2.8e-37  Score=287.92  Aligned_cols=226  Identities=21%  Similarity=0.358  Sum_probs=187.3

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS  129 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~  129 (293)
                      ..|.+++|++++.++++++.++|+.++...  ...|+||||+.|+++..+    .+|+|||++.|.    ++.++|+||.
T Consensus       152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~----~~~l~~~Vk~  225 (399)
T PRK13289        152 RGWRDFRVVKKVPESEVITSFYLEPVDGGP--VADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN----GKYYRISVKR  225 (399)
T ss_pred             CCcEEEEEEEEEECCCCEEEEEEEcCCCCc--CCCCCCCCeEEEEEecCCccccceeEEEeeeCCC----CCeEEEEEEE
Confidence            457889999999999999999999654321  247899999999986432    249999999986    6799999998


Q ss_pred             eC-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710          130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (293)
Q Consensus       130 ~~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~  207 (293)
                      .+ |.+|.||++ +++||+|.++||+|+ |.++.    +..+++|||||||||||++++++++.......+++|+|++|+
T Consensus       226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~  300 (399)
T PRK13289        226 EAGGKVSNYLHDHVNVGDVLELAAPAGD-FFLDV----ASDTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARN  300 (399)
T ss_pred             CCCCeehHHHhhcCCCCCEEEEEcCccc-cccCC----CCCCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence            76 689999986 999999999999998 76653    246789999999999999999999986666789999999999


Q ss_pred             ccccccHHHHHHHHhC--CcEEEEEEecCCCC-CC----ccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHH
Q 022710          208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGN-WS----GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL  280 (293)
Q Consensus       208 ~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~-~~----~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~  280 (293)
                      .++++|+++|++|...  +++++++++++... +.    +..|++.+.....  .....+..+|+|||+.|++.+.+.|+
T Consensus       301 ~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~--~~~~~~~~vyiCGp~~m~~~v~~~L~  378 (399)
T PRK13289        301 GGVHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEA--WLPDPDADFYFCGPVPFMQFVAKQLL  378 (399)
T ss_pred             hhhchHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHh--hCCCCCCEEEEECCHHHHHHHHHHHH
Confidence            9999999999999864  78888888875432 21    2347887654442  12223678999999999999999999


Q ss_pred             HcCCCccCeecc
Q 022710          281 AEGVSSEKILKN  292 (293)
Q Consensus       281 ~~Gv~~~~I~~~  292 (293)
                      +.|+++++||++
T Consensus       379 ~~Gv~~~~I~~E  390 (399)
T PRK13289        379 ELGVPEERIHYE  390 (399)
T ss_pred             HcCCCHHHeeee
Confidence            999999999986

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=100.00  E-value=2e-37  Score=270.03  Aligned_cols=219  Identities=24%  Similarity=0.385  Sum_probs=183.7

Q ss_pred             eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-C--ceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-G--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (293)
Q Consensus        60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s  135 (293)
                      +|++++.+++++++++|+.+.     ...|+||||+.|+++.. +  ..|+|||++.+.    ++.++|.||.++ |.+|
T Consensus         1 ~v~~~~~~t~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~----~~~i~~~i~~~~~G~~s   71 (241)
T cd06195           1 TVLKRRDWTDDLFSFRVTRDI-----PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY----EENLEFYIILVPDGPLT   71 (241)
T ss_pred             CeEEEEEcCCCEEEEEEcCCC-----CCccCCCCeEEEeccCCCCCeeeecccccCCCC----CCeEEEEEEEecCCCCc
Confidence            478899999999999998543     25789999999999864 3  468999999986    689999999864 7899


Q ss_pred             HhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          136 EVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       136 ~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      +||+++++||+|.+. ||+|+ |.++..   ...++++||||||||||++++++++.......+++|+|++|+.++++|.
T Consensus        72 ~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~d~~~~  147 (241)
T cd06195          72 PRLFKLKPGDTIYVGKKPTGF-LTLDEV---PPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQ  147 (241)
T ss_pred             hHHhcCCCCCEEEECcCCCCc-eeecCC---CCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEccCCHHHhhhH
Confidence            999999999999999 99998 766531   1467999999999999999999999765566899999999999999999


Q ss_pred             HHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh---c---cCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          215 DKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---K---IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       215 ~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~---~---~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      ++|++|...   +++++++++++++.| +..|++++.+....   .   .....+..+|+|||++|++.+.+.|++.|++
T Consensus       148 ~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~  226 (241)
T cd06195         148 DEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFS  226 (241)
T ss_pred             HHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            999999875   788988888877766 56788887654210   0   1122467899999999999999999999999


Q ss_pred             c------cCeecc
Q 022710          286 S------EKILKN  292 (293)
Q Consensus       286 ~------~~I~~~  292 (293)
                      +      .+||+|
T Consensus       227 ~~~~~~~~~~~~E  239 (241)
T cd06195         227 KNHRRKPGNITVE  239 (241)
T ss_pred             ccccCCCceEEEe
Confidence            9      999876

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=100.00  E-value=2.4e-37  Score=265.79  Aligned_cols=215  Identities=27%  Similarity=0.425  Sum_probs=180.1

Q ss_pred             EeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhhh
Q 022710           63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC  139 (293)
Q Consensus        63 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L~  139 (293)
                      .++.++++++.++|+.++     ...|+||||+.|+++..  ...|+|||++.|..   .+.++|+||.++ |.+|+||+
T Consensus         2 ~~~~~~~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~~~l~vk~~~~G~~s~~l~   73 (223)
T cd00322           2 ATEDVTDDVRLFRLQLPN-----GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE---EGELELTVKIVPGGPFSAWLH   73 (223)
T ss_pred             ceEEecCCeEEEEEecCC-----CCCcCCCcEEEEEecCCCCcceeeeeccCCCCC---CCeEEEEEEEeCCCchhhHHh
Confidence            467788999999998654     25789999999999863  56899999999974   589999999987 79999999


Q ss_pred             cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 022710          140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE  219 (293)
Q Consensus       140 ~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~  219 (293)
                      ++++||+|.+.||+|+++ +.    .+..++++|||+|+||||++++++++.......+++++|++|+.++++|+++|++
T Consensus        74 ~~~~G~~v~i~gP~G~~~-~~----~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~  148 (223)
T cd00322          74 DLKPGDEVEVSGPGGDFF-LP----LEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEE  148 (223)
T ss_pred             cCCCCCEEEEECCCcccc-cC----cccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhhHHHHHHH
Confidence            999999999999999954 22    1367899999999999999999999986656789999999999999999999999


Q ss_pred             HHh--CCcEEEEEEecCCCCCCccccccc--hHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          220 WES--SGVKIVPVLSQPDGNWSGETGYVQ--AAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       220 l~~--~~i~~~~~~s~~~~~~~~~~g~v~--~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      |..  .+++++++.+++...+....+.+.  +.+..  ......+..+|+|||+.|++.+.+.|.+.|+++++|+++
T Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~e  223 (223)
T cd00322         149 LAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILA--LLPDDSGALVYICGPPAMAKAVREALVSLGVPEERIHTE  223 (223)
T ss_pred             HHHhCCCeEEEEEecCCCCCCCcccceeeHHHHHHh--hcccccCCEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence            986  378888888887666655555544  22222  223346789999999999999999999999999999975

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=4.5e-37  Score=268.14  Aligned_cols=221  Identities=23%  Similarity=0.365  Sum_probs=184.7

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCC-CCCCCCeEEEEEEEe
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPS-FASASGAFEFLVKSV  130 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~-~~~~~~~~~~~Vk~~  130 (293)
                      ..+..++|++++.+++++++++|+.++.    ...|+||||++|.++..+  ..|+|||++.+. .   ++.++|+||.+
T Consensus        15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~----~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~---~~~l~~~ik~~   87 (243)
T cd06216          15 ARELRARVVAVRPETADMVTLTLRPNRG----WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQE---DGTITLTVKAQ   87 (243)
T ss_pred             cceeEEEEEEEEEcCCCcEEEEEecCCC----CCCcCCCceEEEEEEECCeEEEEEEeccCCCcCC---CCeEEEEEEEc
Confidence            3566899999999999999999986432    357899999999986433  469999999885 4   78999999997


Q ss_pred             C-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710          131 A-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (293)
Q Consensus       131 ~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~  208 (293)
                      + |.+|.||++ +++||+|.+.||+|+ |.++.    +..++++|||||+||||++++++++.......++.++|++|+.
T Consensus        88 ~~G~~s~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~~  162 (243)
T cd06216          88 PDGLVSNWLVNHLAPGDVVELSQPQGD-FVLPD----PLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTR  162 (243)
T ss_pred             CCCcchhHHHhcCCCCCEEEEECCcee-eecCC----CCCCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCCh
Confidence            5 689999985 999999999999998 76652    2368999999999999999999999866556889999999999


Q ss_pred             cccccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710          209 KRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS  286 (293)
Q Consensus       209 ~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~  286 (293)
                      ++++|.++|++|.+  .+++++++++++     +..|++.+...+. ...+..+..+|+|||+.|++++.+.|++.|++ 
T Consensus       163 ~~~~~~~el~~l~~~~~~~~~~~~~s~~-----~~~g~~~~~~l~~-~~~~~~~~~vyvcGp~~m~~~~~~~l~~~Gv~-  235 (243)
T cd06216         163 EDVIFADELRALAAQHPNLRLHLLYTRE-----ELDGRLSAAHLDA-VVPDLADRQVYACGPPGFLDAAEELLEAAGLA-  235 (243)
T ss_pred             hhhHHHHHHHHHHHhCCCeEEEEEEcCC-----ccCCCCCHHHHHH-hccCcccCeEEEECCHHHHHHHHHHHHHCCCc-
Confidence            99999999999984  378888887764     3457777654442 22333457999999999999999999999999 


Q ss_pred             cCeeccC
Q 022710          287 EKILKNF  293 (293)
Q Consensus       287 ~~I~~~~  293 (293)
                      ++|+++.
T Consensus       236 ~~i~~e~  242 (243)
T cd06216         236 DRLHTER  242 (243)
T ss_pred             cceeecc
Confidence            9999873

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=100.00  E-value=2.6e-37  Score=272.43  Aligned_cols=217  Identities=18%  Similarity=0.414  Sum_probs=183.4

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTA  135 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s  135 (293)
                      ..+++|+++++++++++.++|+.+       ..|+||||+.|++++.+. ++|||++.+     ++.++|+||.. |.+|
T Consensus         7 ~~~~~v~~i~~~t~~~~~~~l~~~-------~~~~pGQfi~l~~~~~~~-~pySi~~~~-----~~~~~~~Ik~~-G~~S   72 (263)
T PRK08221          7 PAAYKILDITKHTDIEYTFRVEVD-------GPVKPGQFFEVSLPKVGE-APISVSDYG-----DGYIDLTIRRV-GKVT   72 (263)
T ss_pred             CccEEEEEEeccCCcEEEEEecCC-------CCCCCCceEEEEeCCCCc-ceeeccCCC-----CCEEEEEEEeC-Cchh
Confidence            346999999999999999999742       268999999999986544 789998875     67899999988 9999


Q ss_pred             HhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccH
Q 022710          136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       136 ~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-~~~v~l~~~~r~~~~~~~~  214 (293)
                      ++|+++++||+|.++||+|++|.++.    ...+++||||+||||||++|+++++..... ..+++|+|++|+.++++|.
T Consensus        73 ~~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~  148 (263)
T PRK08221         73 DEIFNLKEGDKLFLRGPYGNGFPVDT----YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFK  148 (263)
T ss_pred             hHHHhCCCCCEEEEECCCCCCcccCc----cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHH
Confidence            99999999999999999998776652    245799999999999999999999875433 4689999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          215 DKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       215 ~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++|++|.. ++++++++++++..|.+..|++.+.+.+. ...+..+..+|+|||+.|++.+.+.|++.|++.++|+..
T Consensus       149 ~el~~~~~-~~~~~~~~~~~~~~~~~~~G~v~~~l~~~-~~~~~~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~~~  224 (263)
T PRK08221        149 EDLKRWRE-KINLILTLDEGEEGYRGNVGLVTKYIPEL-TLKDIDNMQVIVVGPPIMMKFTVLEFLKRGIKEENIWVS  224 (263)
T ss_pred             HHHHHHhh-cCcEEEEecCCCCCCccCccccChhhHhc-cCCCcCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence            99999987 44566667777777878889999866552 122335678999999999999999999999999999875

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=100.00  E-value=3e-37  Score=280.91  Aligned_cols=221  Identities=20%  Similarity=0.346  Sum_probs=182.3

Q ss_pred             eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-CceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-GKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (293)
Q Consensus        57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~  134 (293)
                      ..++|.+++.++++++.++|+.++     ...|+||||++|++++. ...|+|||++.|..   .+.++|+||..+ |.+
T Consensus        10 ~~~~V~~i~~~t~~v~~l~l~~~~-----~~~f~pGQfv~l~~~~~~~~~R~ySias~p~~---~~~l~i~Vk~~~~G~~   81 (332)
T PRK10684         10 NRMQVHSIVQETPDVWTISLICHD-----FYPYRAGQYALVSIRNSAETLRAYTLSSTPGV---SEFITLTVRRIDDGVG   81 (332)
T ss_pred             eeEEEEEEEccCCCeEEEEEcCCC-----CCCcCCCCEEEEEecCCCEeeeeecccCCCCC---CCcEEEEEEEcCCCcc
Confidence            388999999999999999997532     24789999999999854 34689999999875   678999999976 688


Q ss_pred             hHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 022710          135 AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY  213 (293)
Q Consensus       135 s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~  213 (293)
                      |+||+ ++++||+|.+.||+|+ |.+..    ...+++||||||+||||+++|++++...+...+++|+|++|+.++++|
T Consensus        82 S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r~~~~~~~  156 (332)
T PRK10684         82 SQWLTRDVKRGDYLWLSDAMGE-FTCDD----KAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVRTPQDVIF  156 (332)
T ss_pred             hhHHHhcCCCCCEEEEeCCccc-cccCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCCChHHhhh
Confidence            99997 6999999999999998 75542    245789999999999999999999876666689999999999999999


Q ss_pred             HHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          214 QDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       214 ~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      .++|++|...  +++++++.+++. ......|++.+....+ ...+..+..+|+|||+.|++.+.+.|++.|+++++||+
T Consensus       157 ~~el~~l~~~~~~~~~~~~~~~~~-~~~~~~grl~~~~l~~-~~~~~~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~  234 (332)
T PRK10684        157 ADEWRQLKQRYPQLNLTLVAENNA-TEGFIAGRLTRELLQQ-AVPDLASRTVMTCGPAPYMDWVEQEVKALGVTADRFFK  234 (332)
T ss_pred             HHHHHHHHHHCCCeEEEEEeccCC-CCCccccccCHHHHHH-hcccccCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEe
Confidence            9999999874  667766655432 1112468887655442 12333467899999999999999999999999999998


Q ss_pred             c
Q 022710          292 N  292 (293)
Q Consensus       292 ~  292 (293)
                      +
T Consensus       235 E  235 (332)
T PRK10684        235 E  235 (332)
T ss_pred             e
Confidence            6

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=100.00  E-value=3.5e-37  Score=266.93  Aligned_cols=223  Identities=22%  Similarity=0.383  Sum_probs=188.3

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s  135 (293)
                      ++|.+++.+++++..++|+.++..  ....++||||++|+++..  ...|+|||++.+..   ++.++|+||.++ |.+|
T Consensus         1 ~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~---~~~~~~~v~~~~~G~~s   75 (234)
T cd06183           1 FKLVSKEDISHDTRIFRFELPSPD--QVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD---KGYFDLLIKIYPGGKMS   75 (234)
T ss_pred             CEeEEeEecCCCEEEEEEECCCCC--CcCCCCcccEEEEEecCCCcccccccccccCCCc---CCEEEEEEEECCCCcch
Confidence            468999999999999999976531  235789999999999864  35689999998865   678999999974 7899


Q ss_pred             HhhhcCCCCCEEEEEeecCCCccccCCCCCCCC-CeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCcccccc
Q 022710          136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEY-PTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAY  213 (293)
Q Consensus       136 ~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~-~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~  213 (293)
                      +||+++++||+|.++||+|. |.++.    +.. +++||||||+||||++++++++.... ...+++++|++|+.++.+|
T Consensus        76 ~~l~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~  150 (234)
T cd06183          76 QYLHSLKPGDTVEIRGPFGK-FEYKP----NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILL  150 (234)
T ss_pred             hHHhcCCCCCEEEEECCccc-eeecC----CCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhh
Confidence            99999999999999999998 76652    233 79999999999999999999997543 4579999999999999999


Q ss_pred             HHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccC-CCCCcEEEEeCChHHHH-HHHHHHHHcCCCccC
Q 022710          214 QDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF-NPQGTGVVLCGQKQMAE-EVTSIVLAEGVSSEK  288 (293)
Q Consensus       214 ~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~v~vCGp~~~~~-~~~~~L~~~Gv~~~~  288 (293)
                      .++|++|...   +++++++++++++.|.+..|++++.+.+..... ...+..+|+|||++|++ .+++.|++.|+++++
T Consensus       151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~  230 (234)
T cd06183         151 REELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGYKKDN  230 (234)
T ss_pred             HHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCCCHHH
Confidence            9999999863   789998888887778888899988765532111 23567899999999999 999999999999999


Q ss_pred             eec
Q 022710          289 ILK  291 (293)
Q Consensus       289 I~~  291 (293)
                      ||.
T Consensus       231 i~~  233 (234)
T cd06183         231 VFK  233 (234)
T ss_pred             EEe
Confidence            985

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=100.00  E-value=8.2e-37  Score=267.65  Aligned_cols=219  Identities=21%  Similarity=0.339  Sum_probs=182.1

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      .|..++|.++++++++++.|+|..++...   ..|+||||+.|.++..+  ..|.|||+|+|..   ++.+.|.||+.+ 
T Consensus         4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~---~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~---~~~~~isVk~~~~   77 (266)
T COG1018           4 GFRRVTVTSVEPETDDVFSFTLEPPDGLR---LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDE---DSLYRISVKREDG   77 (266)
T ss_pred             ceEEEEEEEEEEecCceEEEEEEcCCCCc---cccCCCCeEEEEecCCCceeeEEEEeccCCCC---CceEEEEEEEeCC
Confidence            58899999999999999999999765431   26999999999999664  6799999999985   679999999998 


Q ss_pred             CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |..|+||+ ++++||+|.+.+|.|. |.++..    ...+++|||||+||||++||++.+.+.+. .+|.++|++|+.++
T Consensus        78 G~~S~~Lh~~lk~Gd~l~v~~P~G~-F~l~~~----~~~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~h~~R~~~~  151 (266)
T COG1018          78 GGGSNWLHDHLKVGDTLEVSAPAGD-FVLDDL----PERKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLVHAARTPAD  151 (266)
T ss_pred             CcccHHHHhcCCCCCEEEEecCCCC-ccCCCC----CCCcEEEEeccccHhHHHHHHHHHHHhCC-CCEEEEEecCChhh
Confidence            79999999 7999999999999998 877642    34489999999999999999999987777 99999999999999


Q ss_pred             cccHHHHHHHHhC--C-cEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          211 MAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       211 ~~~~~~l~~l~~~--~-i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      +.|+|+ +.+...  + ..+..+.+     +....|+++......  ........+|+|||.+|++.++..|.+.|++.+
T Consensus       152 ~af~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~--~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~  223 (266)
T COG1018         152 LAFRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLS--AAPDGGREVYLCGPGPFMQAVRLALEALGVPDD  223 (266)
T ss_pred             cchhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhc--cCCCCCCEEEEECCHHHHHHHHHHHHHcCCChh
Confidence            999998 777653  3 34444443     223456666655442  222222899999999999999999999999999


Q ss_pred             CeeccC
Q 022710          288 KILKNF  293 (293)
Q Consensus       288 ~I~~~~  293 (293)
                      +||++.
T Consensus       224 ~vh~E~  229 (266)
T COG1018         224 RVHLEG  229 (266)
T ss_pred             cEEEee
Confidence            999863

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=100.00  E-value=7.4e-37  Score=263.15  Aligned_cols=215  Identities=16%  Similarity=0.272  Sum_probs=175.6

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhhh
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC  139 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L~  139 (293)
                      |.+++.+++++++++|+.++.     ..|+||||++|++++ ...|+|||++.|..   .+.++|+||..+ |.+|.||+
T Consensus         1 V~~~~~~~~~~~~i~l~~~~~-----~~~~pGQ~v~l~~~~-~~~r~ySi~s~~~~---~~~~~~~i~~~~~G~~s~~l~   71 (222)
T cd06194           1 VVSLQRLSPDVLRVRLEPDRP-----LPYLPGQYVNLRRAG-GLARSYSPTSLPDG---DNELEFHIRRKPNGAFSGWLG   71 (222)
T ss_pred             CceeeecCCCEEEEEEecCCC-----CCcCCCCEEEEEcCC-CCceeeecCCCCCC---CCEEEEEEEeccCCccchHHH
Confidence            467889999999999986532     468999999999986 45699999999874   589999999875 68999999


Q ss_pred             c-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710          140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (293)
Q Consensus       140 ~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (293)
                      + +++||+|.+.||+|+++...    ....++++|||||+||||+++++++++..+...++.++|++|+.++++|+++|+
T Consensus        72 ~~~~~G~~v~i~gP~G~~~~~~----~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~  147 (222)
T cd06194          72 EEARPGHALRLQGPFGQAFYRP----EYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALL  147 (222)
T ss_pred             hccCCCCEEEEecCcCCeeccC----CCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHH
Confidence            7 79999999999999955332    125678999999999999999999988666678999999999999999999999


Q ss_pred             HHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          219 EWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       219 ~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      +|+..  ++++++++++++..+..  ++..+....  .........+|+|||++|++.+++.|++.|+++++||++
T Consensus       148 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e  219 (222)
T cd06194         148 WLAREHPNFRYIPCVSEGSQGDPR--VRAGRIAAH--LPPLTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYAD  219 (222)
T ss_pred             HHHHHCCCeEEEEEEccCCCCCcc--cccchhhhh--hccccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence            99863  78888888876544311  122222222  112234688999999999999999999999999999986

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=100.00  E-value=1.3e-36  Score=265.96  Aligned_cols=218  Identities=22%  Similarity=0.367  Sum_probs=175.7

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEc--CCCceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV--DVGKPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~--~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      .|..++|++++++++++++++|+.+.      ..|+||||++|.++  +....|+|||++.|.    ++.++|+||.++ 
T Consensus         3 ~~~~~~V~~i~~~t~~v~~l~l~~~~------~~~~pGQfv~l~~~~~g~~~~R~ySias~p~----~~~l~~~ik~~~~   72 (248)
T PRK10926          3 DWVTGKVTKVQNWTDALFSLTVHAPV------DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD----NPDLEFYLVTVPE   72 (248)
T ss_pred             ccEEEEEEEEEEcCCCeEEEEEeCCC------CCCCCCCEEEEEEecCCcEEEeeecccCCCC----CCeEEEEEEEeCC
Confidence            58999999999999999999998531      26899999999985  333569999999986    568999999875 


Q ss_pred             CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710          132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (293)
Q Consensus       132 G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~  211 (293)
                      |.+|+||+++++||+|.+.||.+.+|.++..   ...++++||||||||||++++++++.+.+...+++|+|++|+.+++
T Consensus        73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~---~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~  149 (248)
T PRK10926         73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEV---PDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAARYAADL  149 (248)
T ss_pred             CCcChHHHhCCCCCEEEEecCCCcceEccCC---CCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeCCcHHHH
Confidence            7899999999999999999988555665521   1347999999999999999999998755566789999999999999


Q ss_pred             ccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh------ccCCCCCcEEEEeCChHHHHHHHHHHHH-
Q 022710          212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK------KIFNPQGTGVVLCGQKQMAEEVTSIVLA-  281 (293)
Q Consensus       212 ~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~------~~~~~~~~~v~vCGp~~~~~~~~~~L~~-  281 (293)
                      +|+++|++|+..   +++++.++++++. +.+..|++++.+.+..      ...+..+..+|+|||+.|++.+.+.|.+ 
T Consensus       150 ~~~~el~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~  228 (248)
T PRK10926        150 SYLPLMQELEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET  228 (248)
T ss_pred             HHHHHHHHHHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence            999999999763   6888888887542 3335688876543211      0112345789999999999999999976 


Q ss_pred             cCCCc
Q 022710          282 EGVSS  286 (293)
Q Consensus       282 ~Gv~~  286 (293)
                      .|+++
T Consensus       229 ~~~~~  233 (248)
T PRK10926        229 RQMTK  233 (248)
T ss_pred             cCccc
Confidence            57754

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=100.00  E-value=9.6e-37  Score=279.84  Aligned_cols=229  Identities=21%  Similarity=0.306  Sum_probs=185.2

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G  132 (293)
                      |+.++|.+++.++++++.|+|+.+++. .....|+|||||+|+++..  ...|+|||++.|.    ++.++|+||.++ |
T Consensus         1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~-~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~----~~~l~i~vk~~~~G   75 (352)
T TIGR02160         1 FHRLTVAEVERLTADAVAISFEIPDEL-AEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA----PGEIRVAVKKIPGG   75 (352)
T ss_pred             CeEeEEEEEEecCCCeEEEEEeCCccc-cccCCCCCCCeEEEEEecCCcEeeeeccccCCCC----CCcEEEEEEEeCCC
Confidence            567899999999999999999875421 0124789999999998633  3468999999885    689999999986 5


Q ss_pred             cchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710          133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (293)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~  211 (293)
                      .+|.||+ ++++||+|.+.||+|+ |.++...  ...++++|||||+||||+++|+++++..+...++.|+|++|+.+++
T Consensus        76 ~~S~~l~~~l~~Gd~v~v~gP~G~-f~~~~~~--~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~  152 (352)
T TIGR02160        76 LFSTWANDEIRPGDTLEVMAPQGL-FTPDLST--PHAGHYVAVAAGSGITPMLSIAETVLAAEPRSTFTLVYGNRRTASV  152 (352)
T ss_pred             cchHHHHhcCCCCCEEEEeCCcee-eecCCCc--cccccEEEEeccccHhHHHHHHHHHHhcCCCceEEEEEEeCCHHHH
Confidence            7899997 7999999999999998 7655311  1347899999999999999999998876666899999999999999


Q ss_pred             ccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh---ccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       212 ~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~---~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      +|.++|++|...   +++++++++++++.+.+..|+++.....+.   .........+|+|||+.|++.+++.|.+.|++
T Consensus       153 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~  232 (352)
T TIGR02160       153 MFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGVP  232 (352)
T ss_pred             HHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence            999999999763   488888888876665555677653222111   11123457899999999999999999999999


Q ss_pred             ccCeecc
Q 022710          286 SEKILKN  292 (293)
Q Consensus       286 ~~~I~~~  292 (293)
                      +++||++
T Consensus       233 ~~~i~~E  239 (352)
T TIGR02160       233 AGRVHLE  239 (352)
T ss_pred             HHHEEEE
Confidence            9999986

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=100.00  E-value=8.3e-37  Score=285.07  Aligned_cols=224  Identities=25%  Similarity=0.425  Sum_probs=187.0

Q ss_pred             eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------------------------------Cce
Q 022710           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GKP  105 (293)
Q Consensus        57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------------------------------~~~  105 (293)
                      .+++|++++.++++++.++|+.++...   ..|+||||++|++++.                               ...
T Consensus       134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~---~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (409)
T PRK05464        134 WECTVISNDNVATFIKELVLKIPEGEE---VPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI  210 (409)
T ss_pred             EEEEEEEcccCCchhheEEEecCCCCc---ccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence            379999999999999999999764322   3689999999998742                               346


Q ss_pred             eeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEE
Q 022710          106 TFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA  175 (293)
Q Consensus       106 r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia  175 (293)
                      |+|||++.|..   ++.++|+||..          .|.+|.||+++++||+|.+.||+|++| +.     +..+++||||
T Consensus       211 R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~-----~~~~~ivlIA  281 (409)
T PRK05464        211 RAYSMANYPEE---KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFF-AK-----DTDAEMVFIG  281 (409)
T ss_pred             eeeccCCCCCC---CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcE-ec-----CCCceEEEEE
Confidence            89999999975   67999999973          378999999999999999999999954 33     1467999999


Q ss_pred             eCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecC--CCCCCccccccchHHH
Q 022710          176 TGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFS  250 (293)
Q Consensus       176 ~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~v~~~~~  250 (293)
                      |||||||+++++++++.. +...+++|+|++|+.++++|.++|++|...  +++++++++++  ++.|.+..|++.+.+.
T Consensus       282 gGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~  361 (409)
T PRK05464        282 GGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLY  361 (409)
T ss_pred             eccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHH
Confidence            999999999999987654 345789999999999999999999999763  78888888764  3557778899998776


Q ss_pred             hhhc--cCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          251 RAKK--IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       251 ~~~~--~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      +...  .....+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus       362 ~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E  405 (409)
T PRK05464        362 ENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLD  405 (409)
T ss_pred             HhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEc
Confidence            5321  12335678999999999999999999999999999987

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=100.00  E-value=2.4e-36  Score=263.04  Aligned_cols=226  Identities=26%  Similarity=0.413  Sum_probs=186.2

Q ss_pred             eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-Cc
Q 022710           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GS  133 (293)
Q Consensus        57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~  133 (293)
                      ..++|++++.+++++++++|+.+.+.. ....|+||||+.|+++..  ..+|+||+++.+.    ++.++|+|+.++ |.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~----~~~l~~~i~~~~~G~   76 (241)
T cd06214           2 HPLTVAEVVRETADAVSITFDVPEELR-DAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG----DDELRITVKRVPGGR   76 (241)
T ss_pred             ceEEEEEEEecCCCeEEEEEecCcccC-CCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC----CCcEEEEEEEcCCCc
Confidence            468899999999999999999754310 114789999999999743  3678999999886    458999999875 68


Q ss_pred             chHhhh-cCCCCCEEEEEeecCCCccccCCCCCC-CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710          134 TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPD-EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (293)
Q Consensus       134 ~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~-~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~  211 (293)
                      +|.||+ ++++|+++.+.||+|+ |.+..    + .+++++|||+||||||++++++++.......+++++|++|+.+++
T Consensus        77 ~s~~l~~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v~l~~~~r~~~~~  151 (241)
T cd06214          77 FSNWANDELKAGDTLEVMPPAGR-FTLPP----LPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASV  151 (241)
T ss_pred             cchhHHhccCCCCEEEEeCCccc-cccCC----CCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcEEEEEEeCCHHHh
Confidence            899997 7999999999999998 54442    2 478999999999999999999998866556889999999999999


Q ss_pred             ccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc---cCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK---IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       212 ~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~---~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      +|.++|++|...   ++++++++++++..|.+..|++.+.+..+..   ........+|+|||+.|++.+.+.|++.|++
T Consensus       152 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~~  231 (241)
T cd06214         152 IFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVP  231 (241)
T ss_pred             hHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCCC
Confidence            999999999764   6788888887766676677888765443211   1223468899999999999999999999999


Q ss_pred             ccCeecc
Q 022710          286 SEKILKN  292 (293)
Q Consensus       286 ~~~I~~~  292 (293)
                      +++|+++
T Consensus       232 ~~~i~~e  238 (241)
T cd06214         232 AERIHRE  238 (241)
T ss_pred             HHHeecc
Confidence            9999986

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=100.00  E-value=1.7e-36  Score=266.95  Aligned_cols=215  Identities=17%  Similarity=0.399  Sum_probs=180.2

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV  137 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~  137 (293)
                      .++|+++.+++++++.+++..  +     ..|+||||++|++++.+ .++||+++.+     ++.++|+||.. |.+|.+
T Consensus         7 ~~~v~~~~~~t~~~~~~~~~~--~-----~~~~pGQ~v~l~~~~~~-~~pySi~~~~-----~~~l~~~Vk~~-G~~S~~   72 (261)
T TIGR02911         7 KSEILEIIKHTDIEYTFRMSY--D-----GPVKPGQFFEVSLPKYG-EAPISVSGIG-----EGYIDLTIRRV-GKVTDE   72 (261)
T ss_pred             eEEEEEEeeccCCEEEEEcCC--C-----CCCCCCcEEEEEecCCC-ccceecCCCC-----CCeEEEEEEeC-chhhHH
Confidence            589999999999999888863  1     36899999999998644 4789998853     68999999987 999999


Q ss_pred             hhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHH
Q 022710          138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDK  216 (293)
Q Consensus       138 L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~  216 (293)
                      |+++++||+|.++||+|++|.++.    +..++++|||+|+||||++++++++.... ...++.|+|++|+.++++|+++
T Consensus        73 L~~l~~Gd~v~i~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~e  148 (261)
T TIGR02911        73 VFTLKEGDNLFLRGPYGNGFDVDN----YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKED  148 (261)
T ss_pred             HHcCCCCCEEEEecCCCCCcccCc----cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHH
Confidence            999999999999999999776552    24679999999999999999999987543 3468999999999999999999


Q ss_pred             HHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       217 l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      |++|... ..++++++.+.+.|.+..|++.+.+.+. ...+..+..+|+|||++|++++++.|++.|+++++|++.
T Consensus       149 L~~l~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~-~~~~~~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~~~  222 (261)
T TIGR02911       149 IAEWKGN-INLTLTLDEAEEDYKGNIGLVTKYIPEL-TLKDIEEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVS  222 (261)
T ss_pred             HHHHHhc-CcEEEEEcCCCCCCcCCeeccCHhHHhc-cCCCccceEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence            9999873 4556666666667777888998766542 122344678999999999999999999999999999875

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>PRK05713 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=274.04  Aligned_cols=213  Identities=17%  Similarity=0.291  Sum_probs=176.4

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~  134 (293)
                      ..+++|++++.++++++.++|+...     ...|+||||++|++++ +..|+|||++.|..   .+.++|+||.++ |.+
T Consensus        91 ~~~~~V~~~~~~t~dv~~l~l~~~~-----~~~~~~GQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~I~~~~~G~~  161 (312)
T PRK05713         91 GLPARVVALDWLGGDVLRLRLEPER-----PLRYRAGQHLVLWTAG-GVARPYSLASLPGE---DPFLEFHIDCSRPGAF  161 (312)
T ss_pred             cCCeEEEEEecCCCCEEEEEEccCC-----cCCcCCCCEEEEecCC-CcccccccCcCCCC---CCeEEEEEEEcCCCcc
Confidence            4579999999999999999998532     2578999999999864 46799999999865   688999999765 678


Q ss_pred             hHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       135 s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      |.||+++++||+|.+++|+|..|.++.   ....+++|||||||||||++|+++++.+.+...+++|+|++|+.++++|.
T Consensus       162 s~~l~~l~~Gd~v~l~~p~gg~~~~~~---~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~  238 (312)
T PRK05713        162 CDAARQLQVGDLLRLGELRGGALHYDP---DWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLA  238 (312)
T ss_pred             chhhhcCCCCCEEEEccCCCCceEecC---CCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEEcCchHHhhhH
Confidence            999999999999999999985565542   11457899999999999999999999876666789999999999999999


Q ss_pred             HHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       215 ~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++|++|+..  +++++++.+.          .+.+.+.+  ......+..+|+|||+.|++.+.+.|.+.|++.++||++
T Consensus       239 ~el~~l~~~~~~~~~~~~~~~----------~~~~~l~~--~~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e  306 (312)
T PRK05713        239 EPLAALAGRHPQLSVELVTAA----------QLPAALAE--LRLVSRQTMALLCGSPASVERFARRLYLAGLPRNQLLAD  306 (312)
T ss_pred             HHHHHHHHHCCCcEEEEEECc----------chhhhhhh--ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence            999999863  7888776543          23343332  111234578999999999999999999999999999986

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=100.00  E-value=1.7e-36  Score=282.60  Aligned_cols=225  Identities=25%  Similarity=0.421  Sum_probs=186.8

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------------------------------Cc
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GK  104 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------------------------------~~  104 (293)
                      +.+++|++++.+++++++++|+.++..   ...|+||||++|+++..                               ..
T Consensus       129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~---~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (405)
T TIGR01941       129 KWECEVISNDNVATFIKELVLKLPDGE---SVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEET  205 (405)
T ss_pred             eeeeEEEEcccccchhheEEEecCCCc---eeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcc
Confidence            347999999999999999999976432   23689999999998732                               34


Q ss_pred             eeeEEecCCCCCCCCCCeEEEEEEEe---------C-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEE
Q 022710          105 PTFLAIASPPSFASASGAFEFLVKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF  174 (293)
Q Consensus       105 ~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivli  174 (293)
                      .|+|||++.|..   ++.++|+||..         + |.+|.||+++++||+|.++||+|+++ +..     ..+++|||
T Consensus       206 ~R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~-l~~-----~~~~lvlI  276 (405)
T TIGR01941       206 VRAYSMANYPAE---KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFF-AKD-----TDAEMVFI  276 (405)
T ss_pred             ceeecCCCCCCC---CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCe-ecC-----CCCCEEEE
Confidence            699999999975   78999999973         3 78999999999999999999999954 331     45789999


Q ss_pred             EeCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecC--CCCCCccccccchHH
Q 022710          175 ATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAF  249 (293)
Q Consensus       175 a~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~v~~~~  249 (293)
                      |||+||||+++++++.+.. +...+++++|++|+.++++|.++|++|...  +++++++++++  ++.|.+..|++++.+
T Consensus       277 AgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l  356 (405)
T TIGR01941       277 GGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVL  356 (405)
T ss_pred             ecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHH
Confidence            9999999999999976643 445789999999999999999999999764  78888887764  456778889998877


Q ss_pred             Hhhhc--cCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          250 SRAKK--IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       250 ~~~~~--~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      .++..  .....+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus       357 ~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E  401 (405)
T TIGR01941       357 YENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDLGVERENILLD  401 (405)
T ss_pred             HHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEe
Confidence            54321  12235678999999999999999999999999999987

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=100.00  E-value=5.4e-36  Score=270.04  Aligned_cols=214  Identities=18%  Similarity=0.330  Sum_probs=174.6

Q ss_pred             CCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-----CceeeEEecCCCCCCCCCCeEEEEE
Q 022710           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLV  127 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-----~~~r~ySi~s~p~~~~~~~~~~~~V  127 (293)
                      ...|.+++|.+++.+++++++++|+++..   ..+.|.||||+++.++..     ...|.|||+|.|..   ++.++|+|
T Consensus        49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~---~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~---~~~le~~I  122 (325)
T PTZ00274         49 SQRYEPYQLGEVIPITHDTALFRFLLHSE---EEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT---KGYFDIIV  122 (325)
T ss_pred             CCceEEEEEEEEEEeCCCeEEEEEeCCcc---cccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC---CCeEEEEE
Confidence            45799999999999999999999997542   235789999999987632     24699999999975   78999999


Q ss_pred             EEeC-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC------CCCcEE
Q 022710          128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK------ERSDVR  200 (293)
Q Consensus       128 k~~~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~------~~~~v~  200 (293)
                      |+++ |.+|.||+++++||+|.++||.|. |.++.    +..+++|||||||||||++||++++++.+      +..+|+
T Consensus       123 K~~~~G~~S~~L~~lk~Gd~v~v~GP~f~-~~~~~----~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~  197 (325)
T PTZ00274        123 KRKKDGLMTNHLFGMHVGDKLLFRSVTFK-IQYRP----NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLS  197 (325)
T ss_pred             EEcCCCcccHHHhcCCCCCEEEEeCCeee-cccCC----CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEE
Confidence            9986 589999999999999999999775 54432    34579999999999999999999987543      345899


Q ss_pred             EEEccCCccccccHHHHHHHHhC---CcEEEEEEecC--CCCCCccccccchHHHhhhccCCC--CCcEEEEeCChHHHH
Q 022710          201 LYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQMAE  273 (293)
Q Consensus       201 l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~--~~~~v~vCGp~~~~~  273 (293)
                      |+|++|+.++++|.++|++|+..   +++++++++++  ++.|.+..|++++.+..+. ..+.  .+..+|+|||++|++
T Consensus       198 Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~-~~~~~~~~~~vylCGPp~Mm~  276 (325)
T PTZ00274        198 FLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRT-MPAPEEKKKIIMLCGPDQLLN  276 (325)
T ss_pred             EEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHh-cCCCccCCcEEEEeCCHHHHH
Confidence            99999999999999999999863   58898888865  4567788899998764421 2222  336799999999999


Q ss_pred             HHHHH
Q 022710          274 EVTSI  278 (293)
Q Consensus       274 ~~~~~  278 (293)
                      .+...
T Consensus       277 av~~~  281 (325)
T PTZ00274        277 HVAGT  281 (325)
T ss_pred             HhcCC
Confidence            88543

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=1.3e-35  Score=296.25  Aligned_cols=236  Identities=20%  Similarity=0.304  Sum_probs=195.3

Q ss_pred             hccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEE
Q 022710           49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFL  126 (293)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~  126 (293)
                      ..+++..|.+++|++++.++++++.|+|+++.+.  ....++|||||+|+++..+  ..|.||+++.+..   .+.|+|+
T Consensus       627 ~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~--~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~---~g~lel~  701 (888)
T PLN02252        627 VALNPREKIPCRLVEKISLSHDVRLFRFALPSED--HVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE---VGHFELV  701 (888)
T ss_pred             cccccCceEEEEEEEEEEccCCeEEEEEEECCCc--ccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC---CCEEEEE
Confidence            4567788999999999999999999999986542  3357899999999986333  4689999999875   7899999


Q ss_pred             EEEe----------CCcchHhhhcCCCCCEEEEEeecCCC-------ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710          127 VKSV----------AGSTAEVLCGLKKGDVVEISQVMGRG-------FAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (293)
Q Consensus       127 Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~-------f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~  189 (293)
                      ||.+          .|.+|++|+++++||+|.|+||+|++       |.++..  +...++++||||||||||++++|++
T Consensus       702 VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~--~~~~~~vvmIAGGsGITPi~silr~  779 (888)
T PLN02252        702 IKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGK--PKFAKKLAMLAGGTGITPMYQVIQA  779 (888)
T ss_pred             EEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccc--cccCceEEEEecceehhHHHHHHHH
Confidence            9987          37899999999999999999999982       222210  1245799999999999999999999


Q ss_pred             hhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCC-CCCCccccccchHHHhhhccCCCCCcEEE
Q 022710          190 GFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPD-GNWSGETGYVQAAFSRAKKIFNPQGTGVV  264 (293)
Q Consensus       190 ~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~-~~~~~~~g~v~~~~~~~~~~~~~~~~~v~  264 (293)
                      ++.. .+..++.|+|++|+.++++|+++|++|+.+   +++++++++++. +.|.+..|++++.+.++.......+..+|
T Consensus       780 ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy  859 (888)
T PLN02252        780 ILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL  859 (888)
T ss_pred             HHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence            9764 346799999999999999999999999863   689999988865 67888899999876653222223467899


Q ss_pred             EeCChHHHHH-HHHHHHHcCCCccCeec
Q 022710          265 LCGQKQMAEE-VTSIVLAEGVSSEKILK  291 (293)
Q Consensus       265 vCGp~~~~~~-~~~~L~~~Gv~~~~I~~  291 (293)
                      +|||+.|++. ++..|++.|+++++|++
T Consensus       860 iCGPp~Mi~~av~~~L~~~G~~~~~I~~  887 (888)
T PLN02252        860 MCGPPPMIEFACQPNLEKMGYDKDSILV  887 (888)
T ss_pred             EeCCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence            9999999995 78899999999999975

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=2.5e-35  Score=265.24  Aligned_cols=223  Identities=22%  Similarity=0.309  Sum_probs=175.1

Q ss_pred             CceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--------ceeeEEecCCCCCCC-CC
Q 022710           55 VWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--------KPTFLAIASPPSFAS-AS  120 (293)
Q Consensus        55 ~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--------~~r~ySi~s~p~~~~-~~  120 (293)
                      .+..++|++++.++     +++++|+|+.+.     .+.|.||||+.|.+++..        ..|.|||+|.|.... +.
T Consensus        23 ~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-----~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~   97 (307)
T PLN03116         23 APYTATIVSVERIVGPKAPGETCHIVIDHGG-----NVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDG   97 (307)
T ss_pred             CCEEEEEEeeEEcccCCCCCceEEEEEecCC-----CCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCC
Confidence            45589999999998     899999999643     257899999999887421        369999999985311 12


Q ss_pred             CeEEEEEEEe--------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHH
Q 022710          121 GAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSL  186 (293)
Q Consensus       121 ~~~~~~Vk~~--------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sl  186 (293)
                      ..++|+||..              .|.+|+||+++++||+|.++||+|++|..+.   .+..+++|||||||||||++||
T Consensus        98 ~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~---~~~~~~~vlIAgGtGIaP~~sm  174 (307)
T PLN03116         98 KTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPE---EDPNATHIMVATGTGIAPFRGF  174 (307)
T ss_pred             CEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCC---CCCCCcEEEEecCccHHHHHHH
Confidence            3899999975              3789999999999999999999998543221   1245789999999999999999


Q ss_pred             HHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhcc--C
Q 022710          187 IESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI--F  256 (293)
Q Consensus       187 l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~--~  256 (293)
                      +++++..+.     ..++.|+|++|+.++++|.++|++|...   +++++++++++.+.|.+..|++++.+.+....  .
T Consensus       175 l~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~  254 (307)
T PLN03116        175 LRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFK  254 (307)
T ss_pred             HHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHh
Confidence            998865331     3579999999999999999999999774   68999999988777877788888866542110  0


Q ss_pred             -CCCCcEEEEeCChHHHHHHHHHHH----HcCCC
Q 022710          257 -NPQGTGVVLCGQKQMAEEVTSIVL----AEGVS  285 (293)
Q Consensus       257 -~~~~~~v~vCGp~~~~~~~~~~L~----~~Gv~  285 (293)
                       ...+..+|+|||++|++.+.+.|.    +.|++
T Consensus       255 ~~~~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~~  288 (307)
T PLN03116        255 LLDNGAHIYFCGLKGMMPGIQDTLKRVAEERGES  288 (307)
T ss_pred             hhcCCcEEEEeCCHHHHHHHHHHHHHHHHHcCcc
Confidence             124578999999999987766654    44654

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=2.5e-35  Score=263.00  Aligned_cols=220  Identities=24%  Similarity=0.356  Sum_probs=178.3

Q ss_pred             CCceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------CceeeEEecCCCCCC-CCC
Q 022710           54 TVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------GKPTFLAIASPPSFA-SAS  120 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------~~~r~ySi~s~p~~~-~~~  120 (293)
                      +.+..++|++++.++     +++++++|+...     ...|+|||||.|.+++.       ...|+|||++.|... .++
T Consensus         6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~   80 (286)
T cd06208           6 KNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG-----KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDG   80 (286)
T ss_pred             CCCeEEEEEeceeccCCCCCcceEEEEEeCCC-----cccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCC
Confidence            456679999999999     699999998632     25789999999987631       136999999988531 124


Q ss_pred             CeEEEEEEEeC-----------CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710          121 GAFEFLVKSVA-----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (293)
Q Consensus       121 ~~~~~~Vk~~~-----------G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~  189 (293)
                      +.++|+||..+           |.+|.||+++++||+|.+.||+|++|..+    .+..++++||||||||||+++++++
T Consensus        81 ~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~~  156 (286)
T cd06208          81 KTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIATGTGIAPFRSFLRR  156 (286)
T ss_pred             CEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEecCccHHHHHHHHHH
Confidence            79999999874           77899999999999999999999855332    1235689999999999999999999


Q ss_pred             hhcc-----CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cCC
Q 022710          190 GFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN  257 (293)
Q Consensus       190 ~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~  257 (293)
                      +...     +...+++|+|++|+.++++|.++|++|+..   +++++++++++++.|.+..|++++.+.+...    ...
T Consensus       157 ~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~  236 (286)
T cd06208         157 LFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLD  236 (286)
T ss_pred             HHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHh
Confidence            8754     234689999999999999999999999873   6899999998877787888999887664211    122


Q ss_pred             CCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          258 PQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       258 ~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      ..+..+|+|||++|++.+.+.|.+.
T Consensus       237 ~~~~~vYiCGp~~m~~~v~~~L~~~  261 (286)
T cd06208         237 KDNTHVYICGLKGMEPGVDDALTSV  261 (286)
T ss_pred             cCCcEEEEeCCchHHHHHHHHHHHH
Confidence            3456899999999999999999873

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=4e-35  Score=267.31  Aligned_cols=221  Identities=23%  Similarity=0.362  Sum_probs=176.4

Q ss_pred             CCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---C---ceeeEEecCCCCCC-CCC
Q 022710           53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFA-SAS  120 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~---~~r~ySi~s~p~~~-~~~  120 (293)
                      ++....++|+.++.+..     ++++++|+.+.     ...|.||||+.|..++.   +   ..|.|||+|.+..+ .++
T Consensus        87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-----~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~  161 (367)
T PLN03115         87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-----EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDS  161 (367)
T ss_pred             cCCCeEEEEEeecccccCCCCCceEEEEEcCCC-----CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCC
Confidence            33445678888888876     89999997543     25789999999998642   1   46899999998421 125


Q ss_pred             CeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHh
Q 022710          121 GAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG  190 (293)
Q Consensus       121 ~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~  190 (293)
                      +.++|+||+.          .|..|+||+++++||+|.+.||+|++|.++    .+...++|||||||||||++++++++
T Consensus       162 ~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp----~~~~~~iImIAgGTGIAP~rs~L~~~  237 (367)
T PLN03115        162 KTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMP----KDPNATIIMLATGTGIAPFRSFLWKM  237 (367)
T ss_pred             CEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCC----cCCCCCEEEEeCCeeHHHHHHHHHHH
Confidence            7899999975          378999999999999999999999966443    23456899999999999999999987


Q ss_pred             hccC-C----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cCCC
Q 022710          191 FSSK-E----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNP  258 (293)
Q Consensus       191 ~~~~-~----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~  258 (293)
                      +... .    ...+.|+|++|+.++++|.++|++|+..   ++++++++|++++.|.+.++|+++.+.+...    ....
T Consensus       238 ~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~  317 (367)
T PLN03115        238 FFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKK  317 (367)
T ss_pred             HhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhccc
Confidence            5322 1    3579999999999999999999999763   7899999999988888889999997765321    1223


Q ss_pred             CCcEEEEeCChHHHHHHHHHHHHc
Q 022710          259 QGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       259 ~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      .++.+|+|||++|++.+.++|.+.
T Consensus       318 ~~~~vYiCGp~~M~~~V~~~l~~l  341 (367)
T PLN03115        318 DNTYVYMCGLKGMEKGIDDIMVSL  341 (367)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHH
Confidence            568999999999999888887653

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=3.5e-35  Score=251.74  Aligned_cols=203  Identities=23%  Similarity=0.358  Sum_probs=164.8

Q ss_pred             CCeEEEEEEcCCCccccccCCCCCeEEEEEEcC--CCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhh-cCCCCC
Q 022710           69 ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC-GLKKGD  145 (293)
Q Consensus        69 ~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~-~l~~Gd  145 (293)
                      .+++.++|+..++    ...|+|||||+|++++  ....|+|||++.|..   ++.++|+||.. |.+|++|+ ++++||
T Consensus         7 ~~~~~i~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~-G~~t~~l~~~l~~G~   78 (216)
T cd06198           7 RPTTTLTLEPRGP----ALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP---DGRLRFTIKAL-GDYTRRLAERLKPGT   78 (216)
T ss_pred             cceEEEEEeeCCC----CCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC---CCeEEEEEEeC-ChHHHHHHHhCCCCC
Confidence            4678888886443    1578999999999986  356799999999875   67999999987 88999998 899999


Q ss_pred             EEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC-C
Q 022710          146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS-G  224 (293)
Q Consensus       146 ~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~  224 (293)
                      +|.++||+|+ |.+..     ..++++|||+|+||||++++++++...+...+++++|++|+.++++|.++|++|... +
T Consensus        79 ~v~i~gP~G~-~~~~~-----~~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~  152 (216)
T cd06198          79 RVTVEGPYGR-FTFDD-----RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAG  152 (216)
T ss_pred             EEEEECCCCC-Ccccc-----cCceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhcC
Confidence            9999999998 76652     478999999999999999999999866666799999999999999999999999875 5


Q ss_pred             cEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          225 VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       225 i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++++++.+. .+.+....+.+    ..  ......+..+|+|||+.|++.+++.|++.|+++++|+++
T Consensus       153 ~~~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E  213 (216)
T cd06198         153 VVLHVIDSP-SDGRLTLEQLV----RA--LVPDLADADVWFCGPPGMADALEKGLRALGVPARRFHYE  213 (216)
T ss_pred             eEEEEEeCC-CCcccchhhhh----hh--cCCCcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchh
Confidence            677665443 22222211111    11  122345689999999999999999999999999999986

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=100.00  E-value=6.9e-35  Score=259.34  Aligned_cols=203  Identities=22%  Similarity=0.366  Sum_probs=168.6

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L  138 (293)
                      ++|++++.++++++.++|+.++.    ...++||||++|+++..+.+++|||++.+..   ++.++|+||.. |.+|++|
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~~----~~~~~pGQfv~l~~~~~~~~rpySias~~~~---~~~i~l~vk~~-G~~T~~L   73 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPRV----AKKAKPGQFVIVRIDEKGERIPLTIADYDRE---KGTITIVFQAV-GKSTRKL   73 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCchh----hccCCCCeEEEEEeCCCCCceeeEeeEEcCC---CCEEEEEEEeC-CcHHHHH
Confidence            57899999999999999986432    2468999999999986666789999997754   78999999998 9999999


Q ss_pred             hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710          139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (293)
Q Consensus       139 ~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (293)
                      +++++||+| .+.||+|++|..+      ..+++++||||+||||++++++++.+.+  .+++++|++|+.++++|.++|
T Consensus        74 ~~l~~Gd~v~~i~GP~G~~~~~~------~~~~~llIaGGiGiaPl~~l~~~l~~~~--~~v~l~~g~r~~~d~~~~~el  145 (281)
T PRK06222         74 AELKEGDSILDVVGPLGKPSEIE------KFGTVVCVGGGVGIAPVYPIAKALKEAG--NKVITIIGARNKDLLILEDEM  145 (281)
T ss_pred             hcCCCCCEEeeEEcCCCCCcccC------CCCeEEEEeCcCcHHHHHHHHHHHHHCC--CeEEEEEecCCHHHhhcHHHH
Confidence            999999999 7999999977543      3579999999999999999999986533  589999999999999999999


Q ss_pred             HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCC-CcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      ++|...   ++ + +. ++.|.+..|++.+.+.+.  ..+.. ...+|+|||+.|++.+.+.|++.|++
T Consensus       146 ~~~~~~---~~-v-~~-~d~~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~  206 (281)
T PRK06222        146 KAVSDE---LY-V-TT-DDGSYGRKGFVTDVLKEL--LESGKKVDRVVAIGPVIMMKFVAELTKPYGIK  206 (281)
T ss_pred             HhhCCe---EE-E-Ec-CCCCcCcccchHHHHHHH--hhcCCCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence            988752   22 2 22 346777889998876552  22222 46799999999999999999999986

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=100.00  E-value=1.7e-34  Score=252.20  Aligned_cols=204  Identities=22%  Similarity=0.390  Sum_probs=169.2

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---CceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV  137 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~  137 (293)
                      |.+++.+++++++++|+.++.    ...|+||||+.|++++.   ...|+|||++.|..   ++.++|+||.. |..|+|
T Consensus         1 V~~~~~~t~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~---~~~l~l~v~~~-G~~s~~   72 (246)
T cd06218           1 VLSNREIADDIYRLVLEAPEI----AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE---EGTITLLYKVV-GKGTRL   72 (246)
T ss_pred             CcceeEecCCeEEEEEeCcch----hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC---CCEEEEEEEEE-CcchHH
Confidence            467899999999999996542    35789999999999862   35789999998854   78999999998 888999


Q ss_pred             hhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710          138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (293)
Q Consensus       138 L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (293)
                      |+++++||+|.+.||+|++|.++     +..++++||||||||||++++++++..  ...++.|+|++|+.++++|+++|
T Consensus        73 l~~l~~Gd~v~i~gP~G~~~~~~-----~~~~~~vlIagGtGIaP~~s~l~~~~~--~~~~v~l~~~~r~~~d~~~~~eL  145 (246)
T cd06218          73 LSELKAGDELDVLGPLGNGFDLP-----DDDGKVLLVGGGIGIAPLLFLAKQLAE--RGIKVTVLLGFRSADDLFLVEEF  145 (246)
T ss_pred             HhcCCCCCEEEEEecCCCCcCCC-----CCCCcEEEEecccCHHHHHHHHHHHHh--cCCceEEEEEccchhhhhhHHHH
Confidence            99999999999999999867654     257899999999999999999999875  34789999999999999999999


Q ss_pred             HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      ++|..   ++.+. +  .+.|.+..|++++.+.+.  ..+..+..+|+|||+.|++.+++.|++.|++..
T Consensus       146 ~~l~~---~~~~~-~--~~~~~~~~g~v~~~l~~~--~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~  207 (246)
T cd06218         146 EALGA---EVYVA-T--DDGSAGTKGFVTDLLKEL--LAEARPDVVYACGPEPMLKAVAELAAERGVPCQ  207 (246)
T ss_pred             HhhCC---cEEEE-c--CCCCCCcceehHHHHHHH--hhccCCCEEEEECCHHHHHHHHHHHHhcCCCEE
Confidence            99853   23222 2  233556778999877663  223356899999999999999999999999854

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=100.00  E-value=4e-34  Score=266.16  Aligned_cols=220  Identities=21%  Similarity=0.354  Sum_probs=173.6

Q ss_pred             CCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---C---ceeeEEecCCCCCCC-CC
Q 022710           53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFAS-AS  120 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~---~~r~ySi~s~p~~~~-~~  120 (293)
                      .+....++|++++.+++     ++++|+|+.++.    ...|+||||++|.+++.   +   ..|+|||+|.+.... +.
T Consensus       139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~----~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~  214 (411)
T TIGR03224       139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH----PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGY  214 (411)
T ss_pred             CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC----cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCC
Confidence            33456799999999954     999999997542    25789999999998742   2   368999999874210 12


Q ss_pred             CeEEEEEEEeC---------CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhh
Q 022710          121 GAFEFLVKSVA---------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF  191 (293)
Q Consensus       121 ~~~~~~Vk~~~---------G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~  191 (293)
                      +.++|+||.++         |.+|+||+++++||+|.++||+|++|.++.    ...+++|||||||||||+++|++++.
T Consensus       215 ~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~----~~~~~lllIagGtGIAP~~s~l~~~~  290 (411)
T TIGR03224       215 NNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPN----HPESSIMMICTGTGSAPMRAMTERRR  290 (411)
T ss_pred             CEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCC----CCCCCEEEEecccCcHHHHHHHHHHH
Confidence            57999999874         889999999999999999999999776542    23578999999999999999999986


Q ss_pred             cc---CCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEE
Q 022710          192 SS---KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVV  264 (293)
Q Consensus       192 ~~---~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~  264 (293)
                      ..   +...+++|+|++|+.++++|.++|++|....+++++++++.++.   .+|++++.+.+...    .....+..+|
T Consensus       291 ~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~~~sr~~~~---~~g~V~d~l~~~~~~v~~ll~~~~~~vY  367 (411)
T TIGR03224       291 RRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLKDPNTYIY  367 (411)
T ss_pred             HHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEEEeccCCcc---CcccHhhHHHHhHHHHHHHHhcCCcEEE
Confidence            42   34579999999999999999999999987777777788875442   46888887655311    1122457899


Q ss_pred             EeCChHHHHHHHHHHHHcC
Q 022710          265 LCGQKQMAEEVTSIVLAEG  283 (293)
Q Consensus       265 vCGp~~~~~~~~~~L~~~G  283 (293)
                      +|||+.|++.+.+.|.+.+
T Consensus       368 iCGp~~M~~~v~~~L~~~~  386 (411)
T TIGR03224       368 ICGLKGMEEGVLDAFRDVC  386 (411)
T ss_pred             EECCHHHHHHHHHHHHHHH
Confidence            9999999888888877654

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=100.00  E-value=4.7e-34  Score=243.82  Aligned_cols=205  Identities=20%  Similarity=0.299  Sum_probs=164.9

Q ss_pred             eEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-C-cchHhhh
Q 022710           62 AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G-STAEVLC  139 (293)
Q Consensus        62 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G-~~s~~L~  139 (293)
                      ++++.+++++++++|+.++...  ...|+||||++|++++ ...|+|||++.|.+   .+.++|+||.++ | .+|.||+
T Consensus         1 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~pGQ~~~l~~~~-~~~r~ySi~s~~~~---~~~l~~~v~~~~~g~~~s~~l~   74 (211)
T cd06185           1 VRIRDEAPDIRSFELEAPDGAP--LPAFEPGAHIDVHLPN-GLVRQYSLCGDPAD---RDRYRIAVLREPASRGGSRYMH   74 (211)
T ss_pred             CceEEcCCCeEEEEEEeCCCCc--CCCCCCCceEEEEcCC-CCceeeeccCCCCC---CCEEEEEEEeccCCCchHHHHH
Confidence            3578999999999999765432  1379999999999986 55799999999874   699999999886 3 4799997


Q ss_pred             -cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710          140 -GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (293)
Q Consensus       140 -~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (293)
                       .+++||+|.++||+|. |.++.     ..++++|||+|+||||++++++++...  ..++.++|++|+.++++|.++|+
T Consensus        75 ~~~~~Gd~v~i~gP~g~-f~~~~-----~~~~~v~ia~GtGiap~~~il~~~~~~--~~~v~l~~~~r~~~~~~~~~~l~  146 (211)
T cd06185          75 ELLRVGDELEVSAPRNL-FPLDE-----AARRHLLIAGGIGITPILSMARALAAR--GADFELHYAGRSREDAAFLDELA  146 (211)
T ss_pred             hcCCCCCEEEEcCCccC-CcCCC-----CCCcEEEEeccchHhHHHHHHHHHHhC--CCCEEEEEEeCCCcchhHHHHHh
Confidence             5899999999999997 76652     467899999999999999999998643  36899999999999999999999


Q ss_pred             HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       219 ~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++...++++.  .+...     ....+.+.+..   .  ..+..+|+|||+.|++.+.+.|++.|++.++|+++
T Consensus       147 ~~~~~~~~~~--~~~~~-----~~~~~~~~~~~---~--~~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e  208 (211)
T cd06185         147 ALPGDRVHLH--FDDEG-----GRLDLAALLAA---P--PAGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFE  208 (211)
T ss_pred             hhcCCcEEEE--ECCCC-----CccCHHHHhcc---C--CCCCEEEEECCHHHHHHHHHHHHHcCCChhheEee
Confidence            9974455543  33221     12334444332   1  23578999999999999999999999999999986

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=4.6e-34  Score=249.88  Aligned_cols=205  Identities=21%  Similarity=0.333  Sum_probs=167.1

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L  138 (293)
                      ++|+++++++++++.++|+.++.    ...|+||||++|+++..+..++|||++.|.+   ++.++|+||.. |..|.+|
T Consensus         1 ~~v~~~~~~t~d~~~~~l~~~~~----~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~---~~~~~~~vk~~-G~~t~~l   72 (248)
T cd06219           1 YKILEKEELAPNVKLFEIEAPLI----AKKAKPGQFVIVRADEKGERIPLTIADWDPE---KGTITIVVQVV-GKSTREL   72 (248)
T ss_pred             CEEEEEEEeCCCeEEEEEEChhh----hccCCCCcEEEEEcCCCCCccceEeEEEcCC---CCEEEEEEEeC-CchHHHH
Confidence            47899999999999999996532    2478999999999876666789999998754   78999999987 8899999


Q ss_pred             hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710          139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (293)
Q Consensus       139 ~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (293)
                      .++++||++ .++||+|++|..+      +.++++|||||+||||++++++++.+.+  .+++|+|++|+.++++|.++|
T Consensus        73 ~~l~~G~~v~~i~gP~G~~~~~~------~~~~~lliagG~GiaP~~~~l~~~~~~~--~~v~l~~~~r~~~~~~~~~el  144 (248)
T cd06219          73 ATLEEGDKIHDVVGPLGKPSEIE------NYGTVVFVGGGVGIAPIYPIAKALKEAG--NRVITIIGARTKDLVILEDEF  144 (248)
T ss_pred             HhcCCCCEeeeeecCCCCCeecC------CCCeEEEEeCcccHHHHHHHHHHHHHcC--CeEEEEEEcCCHHHhhhHHHH
Confidence            999999999 6999999955432      4678999999999999999999986543  689999999999999999999


Q ss_pred             HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS  286 (293)
Q Consensus       218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~  286 (293)
                      ++|..+   ++.. +  ++.|.+..|++.+.+.+.. ........+|+|||+.|++.+.+.|++.|++.
T Consensus       145 ~~l~~~---~~~~-~--~~~~~~~~g~v~~~l~~~~-~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~  206 (248)
T cd06219         145 RAVSDE---LIIT-T--DDGSYGEKGFVTDPLKELI-ESGEKVDLVIAIGPPIMMKAVSELTRPYGIPT  206 (248)
T ss_pred             HhhcCe---EEEE-e--CCCCCCccccchHHHHHHH-hccCCccEEEEECCHHHHHHHHHHHHHcCCCE
Confidence            999642   2222 2  2345566788887665521 12234467999999999999999999999974

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=100.00  E-value=5e-34  Score=294.82  Aligned_cols=235  Identities=20%  Similarity=0.337  Sum_probs=195.6

Q ss_pred             hhccCCCCceeeeEeEee---eCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCe
Q 022710           48 AVRQDTTVWTPTPLAEIS---PAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGA  122 (293)
Q Consensus        48 ~~~~~~~~~~~~~v~~~~---~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~  122 (293)
                      ...+++..|.+++|++++   +.+++++.++|++++..  ..+.|.|||||.|+++..  ...|+||++|.|..   .+.
T Consensus       906 ~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~--~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~---~~~  980 (1167)
T PTZ00306        906 KYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGAL--QRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDD---LGV  980 (1167)
T ss_pred             CcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcc--cccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCC---CCe
Confidence            456678899999999997   56889999999986532  335799999999998633  35699999999975   789


Q ss_pred             EEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC---------CccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc
Q 022710          123 FEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR---------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS  193 (293)
Q Consensus       123 ~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~---------~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~  193 (293)
                      ++|+||...|.+|+||+++++||+|+++||+|.         .|.++    ++..++++||||||||||+++|+++++..
T Consensus       981 i~l~Vr~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~----~~~~~~ivlIAGGtGItP~~sml~~~l~~ 1056 (1167)
T PTZ00306        981 ISILARGDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFR----GHVIRKLALIAGGTGVAPMLQIIRAALKK 1056 (1167)
T ss_pred             EEEEEEcCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeec----cCCCceEEEEECCccHhHHHHHHHHHHhC
Confidence            999999756899999999999999999998772         13332    23567899999999999999999998864


Q ss_pred             C---CCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeC
Q 022710          194 K---ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG  267 (293)
Q Consensus       194 ~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCG  267 (293)
                      +   ...+++|+|++|+.++++|+++|++|+.+   +|+++++++++++.|.+..|++++.+.++.......+..+|+||
T Consensus      1057 ~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCG 1136 (1167)
T PTZ00306       1057 PYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICG 1136 (1167)
T ss_pred             cccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeC
Confidence            3   24689999999999999999999999863   58999999988888888889998875553222233567899999


Q ss_pred             ChHHHHHHHHHHHHcCCCccCeec
Q 022710          268 QKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       268 p~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      |+.|++.+.+.|++.|+++++||+
T Consensus      1137 P~~mv~~v~~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306       1137 PPVMQRAVKADLLALGYNMELVRT 1160 (1167)
T ss_pred             CHHHHHHHHHHHHHcCCCHHHeEE
Confidence            999999999999999999999986

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=100.00  E-value=1.5e-33  Score=246.87  Aligned_cols=207  Identities=20%  Similarity=0.319  Sum_probs=171.0

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeCC
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAG  132 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G  132 (293)
                      +|..++|+++++++++++.++|+.+     ....|+||||++|+++..+  .+|+|||++.|     ++.++|+||.. |
T Consensus         3 ~~~~~~V~~~~~~t~d~~~l~l~~~-----~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-----~~~l~l~Vk~~-G   71 (250)
T PRK00054          3 KPENMKIVENKEIAPNIYTLVLDGE-----KVFDMKPGQFVMVWVPGVEPLLERPISISDID-----KNEITILYRKV-G   71 (250)
T ss_pred             CceEEEEEEEEEecCCeEEEEEeCc-----cccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-----CCEEEEEEEEc-C
Confidence            4778999999999999999999843     2357899999999998643  47899999987     57999999987 8


Q ss_pred             cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 022710          133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA  212 (293)
Q Consensus       133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~  212 (293)
                      ..|++|+++++||+|.+.||+|+.|.++.     ..+++++||+|+||||++++++++...+  .+++++|++|+.++++
T Consensus        72 ~~t~~l~~l~~G~~v~i~gP~G~~f~l~~-----~~~~~vlIagG~GiaP~~s~l~~~~~~~--~~v~l~~~~r~~~d~~  144 (250)
T PRK00054         72 EGTKKLSKLKEGDELDIRGPLGNGFDLEE-----IGGKVLLVGGGIGVAPLYELAKELKKKG--VEVTTVLGARTKDEVI  144 (250)
T ss_pred             hHHHHHhcCCCCCEEEEEcccCCCCCCCC-----CCCeEEEEeccccHHHHHHHHHHHHHcC--CcEEEEEEcCCHHHhh
Confidence            99999999999999999999998786642     5679999999999999999999986433  5799999999999999


Q ss_pred             cHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       213 ~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      |.++|++++.    +.+ .+  ++.|.+..|++++.+.+.  .  .....+|+|||++|++.+.+.|++.|+ +..|..
T Consensus       145 ~~~el~~~~~----~~~-~~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~~l~~~Gv-~~~~~~  211 (250)
T PRK00054        145 FEEEFAKVGD----VYV-TT--DDGSYGFKGFVTDVLDEL--D--SEYDAIYSCGPEIMMKKVVEILKEKKV-PAYVSL  211 (250)
T ss_pred             hHHHHHhcCC----EEE-Ee--cCCCCCcccchhHhHhhh--c--cCCCEEEEeCCHHHHHHHHHHHHHcCC-cEEEEE
Confidence            9999998542    211 12  344556778898877652  1  344689999999999999999999999 444443

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=1.8e-33  Score=245.36  Aligned_cols=206  Identities=20%  Similarity=0.216  Sum_probs=165.1

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC--CCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L  138 (293)
                      |++++.+++++++++|+.++.    ...|+||||++|+++.  ....|+|||++.+..   .+.++|+||.. |.+|+||
T Consensus         1 i~~~~~~t~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~---~~~l~l~i~~~-G~~t~~l   72 (243)
T cd06192           1 IVKKEQLEPNLVLLTIKAPLA----ARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE---EGTISLLVEIR-GPKTKLI   72 (243)
T ss_pred             CceEEEecCCEEEEEEEccch----hhcCCCCCeEEEecCCCCCceeeeeEeeecCCC---CCEEEEEEEEc-CchHHHH
Confidence            467889999999999996532    2578999999999973  346799999999865   78999999987 8999999


Q ss_pred             hcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710          139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (293)
Q Consensus       139 ~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (293)
                      +++++||+|.+.||+|++|...     +..++++||||||||||++++++++...  ..+++++|++|+.++++|.++|+
T Consensus        73 ~~~~~G~~l~i~gP~G~~~~~~-----~~~~~~lliagGtGiap~~~~l~~~~~~--~~~v~l~~~~r~~~d~~~~~el~  145 (243)
T cd06192          73 AELKPGEKLDVMGPLGNGFEGP-----KKGGTVLLVAGGIGLAPLLPIAKKLAAN--GNKVTVLAGAKKAKEEFLDEYFE  145 (243)
T ss_pred             HhCCCCCEEEEEccCCCCCccC-----CCCCEEEEEeCcccHHHHHHHHHHHHHC--CCeEEEEEecCcHHHHHHHHHHH
Confidence            9999999999999999855332     2467999999999999999999998754  37899999999999999999999


Q ss_pred             HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       219 ~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      ++.   ..+ .+.+  ++.|.+..|++.+....   ........+|+|||+.|++.+++.|++.| +..++++
T Consensus       146 ~~~---~~~-~~~~--~~~~~~~~g~v~~~~~~---~~~~~~~~v~icGp~~mv~~~~~~l~~~g-~~~~~~~  208 (243)
T cd06192         146 LPA---DVE-IWTT--DDGELGLEGKVTDSDKP---IPLEDVDRIIVAGSDIMMKAVVEALDEWL-QLIKASV  208 (243)
T ss_pred             hhc---CeE-EEEe--cCCCCccceeechhhhh---hhcccCCEEEEECCHHHHHHHHHHHHhhc-CCceEEE
Confidence            883   222 2223  24456677777664221   12223468999999999999999999988 6666654

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=3.3e-33  Score=244.43  Aligned_cols=209  Identities=24%  Similarity=0.464  Sum_probs=177.9

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~  136 (293)
                      .++|.+++.++++++.++|+.+...    ..++|||||+|++|+ ...++||+++.+..   ++.++|.|+... |.+|.
T Consensus         9 ~~~I~~~~~is~~~~~l~~~~~~~~----~~~~pGQfv~l~~~~-~~~~P~si~~~~~~---~g~~~l~i~~~~~G~~T~   80 (252)
T COG0543           9 SYKVVEKEEISPDTFLLRLRLPFVA----LTFKPGQFVMLRVPG-GVRRPYSLASAPDD---KGELELHIRVYEVGKVTK   80 (252)
T ss_pred             ccEEEEEEEecCceEEEEEeccccc----cccCCCcEEEEEeCC-CcEEEeeeccCCCc---CCcEEEEEEEEeCChHHH
Confidence            5899999999999999999976432    578999999999998 77899999999986   787777777654 79999


Q ss_pred             hhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 022710          137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK  216 (293)
Q Consensus       137 ~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~  216 (293)
                      ++..+++||.|.++||+|++|..+.     ..+++++||||||++|++++++++...++..+|+++|++++.+++++.++
T Consensus        81 ~i~~~k~gd~i~v~GP~G~~~~~~~-----~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~e  155 (252)
T COG0543          81 YIFGLKEGDKIRVRGPLGNGFLREK-----IGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDE  155 (252)
T ss_pred             HHhhccCCCEEEEEcCCCCCccccc-----cCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHH
Confidence            9999999999999999999886652     45559999999999999999999986456689999999999999999999


Q ss_pred             HHHHHhCCcEEEEEEecCCCCCCcccccc-chHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          217 FKEWESSGVKIVPVLSQPDGNWSGETGYV-QAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       217 l~~l~~~~i~~~~~~s~~~~~~~~~~g~v-~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      |++|..+  +++++.+   ++|.|.+|++ .+.+.+   ........+|+|||+.|++.+.+.+.+.|+...
T Consensus       156 l~~~~~~--~~~~~~~---~~~~G~~G~v~~~~~~~---~~~~~~~~v~~cGp~~M~~~v~~~~~~~g~~~~  219 (252)
T COG0543         156 LEELAEK--EVHPVTD---DGWKGRKGFVTTDVLKE---LLDLEVDDVYICGPPAMVKAVREKLKEYGVPIS  219 (252)
T ss_pred             HHHhhcC--cEEEEEC---CCCCccCcceeHHHHhh---hccccCCEEEEECCHHHHHHHHHHHHhcCCchh
Confidence            9999875  5555544   7888999999 554444   222256899999999999999999999997554

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=3.8e-33  Score=241.89  Aligned_cols=198  Identities=22%  Similarity=0.356  Sum_probs=164.1

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L  138 (293)
                      .+|.++++++++++.++|+.+       ..|+||||++|++++.. .++|||++.|      +.++|+||.. |.+|+||
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~-------~~~~pGQ~v~l~~~~~~-~~~~Si~s~~------~~l~~~v~~~-G~~s~~L   65 (233)
T cd06220           1 VTIKEVIDETPTVKTFVFDWD-------FDFKPGQFVMVWVPGVD-EIPMSLSYID------GPNSITVKKV-GEATSAL   65 (233)
T ss_pred             CEEEEEEEEcCCEEEEEEecC-------CCCCCCceEEEEeCCCC-cceeEEecCC------CeEEEEEEec-ChHHHHH
Confidence            368999999999999999742       36899999999997644 4789999987      5799999987 9999999


Q ss_pred             hcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710          139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (293)
Q Consensus       139 ~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (293)
                      +++++||++.+.||+|++|.++       .++++|||+|+||||++++++++...   .+++++|++|+.++++|+++|+
T Consensus        66 ~~l~~Gd~v~i~gP~G~~f~~~-------~~~~vliAgGtGitP~~sil~~~~~~---~~i~l~~~~r~~~d~~~~~eL~  135 (233)
T cd06220          66 HDLKEGDKLGIRGPYGNGFELV-------GGKVLLIGGGIGIAPLAPLAERLKKA---ADVTVLLGARTKEELLFLDRLR  135 (233)
T ss_pred             HhcCCCCEEEEECcCCCCccCC-------CCeEEEEecCcChHHHHHHHHHHHhc---CCEEEEEecCChHHChhHHHHh
Confidence            9999999999999999867542       56899999999999999999998753   7899999999999999999999


Q ss_pred             HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       219 ~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++.    ++.++. .  +.|.+..|++++.+.+.  . ......+|+|||+.|++.+.+.|++.|+ +.+|+.+
T Consensus       136 ~~~----~~~~~~-~--~~~~~~~g~~~~~l~~~--~-~~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~e  198 (233)
T cd06220         136 KSD----ELIVTT-D--DGSYGFKGFVTDLLKEL--D-LEEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSLE  198 (233)
T ss_pred             hCC----cEEEEE-e--CCCCcccceehHHHhhh--c-ccCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEec
Confidence            832    222222 1  24556678898866552  2 2334689999999999999999999999 7888765

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=1.5e-32  Score=245.23  Aligned_cols=212  Identities=21%  Similarity=0.361  Sum_probs=167.8

Q ss_pred             CCCceeeeEeEeeeCC----CCeEEEEEEcCCCc--cccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEE
Q 022710           53 TTVWTPTPLAEISPAA----ESLFHVSIDISDAP--DIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFL  126 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~----~~~~~l~l~~~~~~--~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~  126 (293)
                      ...+.+++|++++.++    ++++.|+|+.++..  +.....|+|||||.|..++....|+|||++.|.    ++.++|+
T Consensus        42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~~~R~YSias~p~----~g~l~l~  117 (289)
T cd06201          42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSDVPRFYSLASSSS----DGFLEIC  117 (289)
T ss_pred             CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCCCCceEecCCCCC----CCeEEEE
Confidence            4468899999999999    59999999976520  112357899999999977666789999999985    7899999


Q ss_pred             EEEeC-CcchHhhhcCCCCCEEEEEe-ecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEc
Q 022710          127 VKSVA-GSTAEVLCGLKKGDVVEISQ-VMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYG  204 (293)
Q Consensus       127 Vk~~~-G~~s~~L~~l~~Gd~v~v~g-P~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~  204 (293)
                      ||.++ |.+|.||+++++||+|.+.+ |.|. |.+.     +..++++||||||||||+++++++..   ...+++|+|+
T Consensus       118 Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~~~-----~~~~~lvlIAgGtGIaP~~s~l~~~~---~~~~v~L~~g  188 (289)
T cd06201         118 VRKHPGGLCSGYLHGLKPGDTIKAFIRPNPS-FRPA-----KGAAPVILIGAGTGIAPLAGFIRANA---ARRPMHLYWG  188 (289)
T ss_pred             EEeCCCccchhhHhhCCCcCEEEEEeccCCC-ccCC-----CCCCCEEEEecCcCHHHHHHHHHhhh---ccCCEEEEEE
Confidence            99864 78999999999999999985 6665 7553     25678999999999999999999862   3468999999


Q ss_pred             cCCcc-ccccHHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhc-c--CCCCCcEEEEeCChHHHHHHHHH
Q 022710          205 ARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-I--FNPQGTGVVLCGQKQMAEEVTSI  278 (293)
Q Consensus       205 ~r~~~-~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-~--~~~~~~~v~vCGp~~~~~~~~~~  278 (293)
                      +|+.+ +++|+++|++|..+  +++++.+++++.     ..|++++.+..... .  ....+..+|+|||+.|++.+.+.
T Consensus       189 ~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~~~  263 (289)
T cd06201         189 GRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVAAV  263 (289)
T ss_pred             ecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-----CcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHHHH
Confidence            99985 89999999999865  567777777653     25677665433110 0  01245789999999999999998


Q ss_pred             HHHc
Q 022710          279 VLAE  282 (293)
Q Consensus       279 L~~~  282 (293)
                      |.+.
T Consensus       264 L~~i  267 (289)
T cd06201         264 LEEI  267 (289)
T ss_pred             HHHH
Confidence            8763

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PRK05802 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=246.07  Aligned_cols=215  Identities=11%  Similarity=0.164  Sum_probs=165.3

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA  131 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~  131 (293)
                      ..+.+++|++++.++++++.++|+.+++  +....++|||||+|++++.+  ..|+|||++.+.+   ++.++|+||.. 
T Consensus        62 ~~~~~~~I~~~~~~t~dv~~l~l~~p~~--~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~---~g~l~l~ik~~-  135 (320)
T PRK05802         62 RKTYECKIIKKENIEDNLIILTLKVPHK--LARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE---ENIIKVAIEIR-  135 (320)
T ss_pred             cccEeEEEEEEEEecCCEEEEEEECCch--hhhccCCCCceEEEEEcCCCCEeEEeeEecccCCC---CCEEEEEEEec-
Confidence            3466899999999999999999987542  12234799999999997543  3589999999865   78999999996 


Q ss_pred             CcchHhhhcCCCCCEEEEEeecCCC-ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLCGLKKGDVVEISQVMGRG-FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~~l~~Gd~v~v~gP~G~~-f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |.+|++|+++++||+|.++||+|++ |.+..+ ++...+++++||||+||||++++++++.+++  .+++++|++|+.++
T Consensus       136 G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~-~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--~~v~li~g~r~~~~  212 (320)
T PRK05802        136 GVKTKKIAKLNKGDEILLRGPYWNGILGLKNI-KSTKNGKSLVIARGIGQAPGVPVIKKLYSNG--NKIIVIIDKGPFKN  212 (320)
T ss_pred             ChhHHHHhcCCCCCEEEEeCCCCcCcCCcccc-cccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--CcEEEEEeCCCHHH
Confidence            9999999999999999999999887 444311 1124568999999999999999999997654  58999999999999


Q ss_pred             cccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHH--cCCC
Q 022710          211 MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLA--EGVS  285 (293)
Q Consensus       211 ~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~--~Gv~  285 (293)
                      ++|.++|++|..+....+. ......+ .+.+|.+.+.+.+      .....+|+|||+.|++.+.+.|.+  .|++
T Consensus       213 ~~~~~el~~~~~~~~~~~~-~ddG~~~-~~~~g~v~~~l~~------~~~~~vy~CGP~~M~k~v~~~l~~~~~~i~  281 (320)
T PRK05802        213 NFIKEYLELYNIEIIELNL-LDDGELS-EEGKDILKEIIKK------EDINLIHCGGSDILHYKIIEYLDKLNEKIK  281 (320)
T ss_pred             HHHHHHHHHhhCceEEEEe-cccCCCC-ccccchHHHHhcC------CCCCEEEEECCHHHHHHHHHHHhhhcCCce
Confidence            9999999998653222111 1111101 1234566665543      123679999999999999999988  5653

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=2.5e-32  Score=241.06  Aligned_cols=200  Identities=23%  Similarity=0.448  Sum_probs=161.3

Q ss_pred             CeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC----------CcchHhhh
Q 022710           70 SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLC  139 (293)
Q Consensus        70 ~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~----------G~~s~~L~  139 (293)
                      ++++++|+.++..   ...|+||||+.|.+++...+|+|||++.|..  ..+.++|+||..+          |.+|.+|+
T Consensus        16 ~v~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~--~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~   90 (267)
T cd06182          16 STRHLEFDLSGNS---VLKYQPGDHLGVIPPNPLQPRYYSIASSPDV--DPGEVHLCVRVVSYEAPAGRIRKGVCSNFLA   90 (267)
T ss_pred             ceEEEEEecCCCC---cCccCCCCEEEEecCCCCCCeeEeecCCCCC--CCCEEEEEEEEEEEecCCCCeeccchhHHHh
Confidence            7999999976411   2578999999999987667899999999852  1489999999864          78899999


Q ss_pred             cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhc----cCCCCcEEEEEccCCc-cccccH
Q 022710          140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS----SKERSDVRLYYGARNL-KRMAYQ  214 (293)
Q Consensus       140 ~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~----~~~~~~v~l~~~~r~~-~~~~~~  214 (293)
                      ++++||.|.+.||+|..|.++.    +..+++||||+||||||+++++++++.    .....++.|+|++|+. ++++|.
T Consensus        91 ~lk~Gd~v~v~~p~G~~f~l~~----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~  166 (267)
T cd06182          91 GLQLGAKVTVFIRPAPSFRLPK----DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYR  166 (267)
T ss_pred             hCCCCCEEEEEEecCCcccCCC----CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHH
Confidence            9999999999999995487753    346789999999999999999999985    2345789999999999 899999


Q ss_pred             HHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCChH-HHHHHHHHHHHc
Q 022710          215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEEVTSIVLAE  282 (293)
Q Consensus       215 ~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~~-~~~~~~~~L~~~  282 (293)
                      ++|++|...  +++++.+++++...   ..+++++.+.....    ... .+..||+|||+. |++.+.+.|++.
T Consensus       167 del~~~~~~~~~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~-~~~~vyvCGp~~~m~~~v~~~L~~~  237 (267)
T cd06182         167 EELQEALKDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN-EGAHIYVCGDAKSMAKDVEDALVKI  237 (267)
T ss_pred             HHHHHHHhCCCcceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh-cCCEEEEECCcccchHHHHHHHHHH
Confidence            999999875  67888888875432   34677665433111    111 345899999999 999999999876

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=7.2e-32  Score=235.48  Aligned_cols=200  Identities=21%  Similarity=0.364  Sum_probs=156.4

Q ss_pred             eeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC------CcchHh
Q 022710           64 ISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA------GSTAEV  137 (293)
Q Consensus        64 ~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~------G~~s~~  137 (293)
                      .+..++++++++|+.++.    ...|+||||++|.+++...+|+|||+|.|.    ++.++|+||..+      |..|+|
T Consensus        11 ~~~~~~~v~~l~l~~~~~----~~~f~pGQ~v~l~~~~~~~~R~YSIas~p~----~~~l~l~Vk~~~~~~~~~G~~S~~   82 (245)
T cd06200          11 PGSQGAPLWRLRLTPPDA----GAQWQAGDIAEIGPRHPLPHREYSIASLPA----DGALELLVRQVRHADGGLGLGSGW   82 (245)
T ss_pred             CCCCCCceEEEEEecCCC----CCCccCCcEEEecCCCCCCCcceEeccCCC----CCEEEEEEEEeccCCCCCeeechh
Confidence            333344799999987532    257899999999987545679999999986    678999999874      458999


Q ss_pred             hhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHH
Q 022710          138 LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQD  215 (293)
Q Consensus       138 L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~-~~~~~~  215 (293)
                      |++ +++||+|.+.||.|..|.++     +..+++|||||||||||++++++++...+ ..++.++|++|+.+ +++|.+
T Consensus        83 L~~~~~~Gd~v~i~gp~gg~F~~~-----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-~~~~~l~~g~r~~~~d~~~~~  156 (245)
T cd06200          83 LTRHAPIGASVALRLRENPGFHLP-----DDGRPLILIGNGTGLAGLRSHLRARARAG-RHRNWLLFGERQAAHDFFCRE  156 (245)
T ss_pred             hhhCCCCCCEEEEEecCCCcccCC-----CCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCeEEEEecCCccccHhHHH
Confidence            986 69999999999877668654     24578999999999999999999987543 35789999999985 899999


Q ss_pred             HHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccC---CCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710          216 KFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEEVTSIVLA  281 (293)
Q Consensus       216 ~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~v~vCGp~-~~~~~~~~~L~~  281 (293)
                      +|++|...  ++++++++++++.    ..+++++.+.+.....   ...+..+|+|||+ +|++.+.+.|.+
T Consensus       157 el~~~~~~~~~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~  224 (245)
T cd06200         157 ELEAWQAAGHLARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDE  224 (245)
T ss_pred             HHHHHHHCCCcceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHH
Confidence            99999875  4677777777542    3577777665421110   0135789999999 999999998864

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=100.00  E-value=8.4e-32  Score=231.39  Aligned_cols=192  Identities=19%  Similarity=0.290  Sum_probs=150.1

Q ss_pred             EeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------------------CceeeEEecCCCCCCCCCCeEE
Q 022710           63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------GKPTFLAIASPPSFASASGAFE  124 (293)
Q Consensus        63 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------------------~~~r~ySi~s~p~~~~~~~~~~  124 (293)
                      +++.+++++.+++|..+++..  ...|+|||||.|.++..                  ...|.|||+|.|....+.+.++
T Consensus         2 ~~~~~s~~v~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~   79 (220)
T cd06197           2 KSEVITPTLTRFTFELSPPDV--VGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFE   79 (220)
T ss_pred             cceecccceeEEEEEecCCcc--ccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEE
Confidence            467889999999999865432  25889999999998742                  3468899999996411127999


Q ss_pred             EEEEEeCCcchHhhhcCC--C---CCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCc
Q 022710          125 FLVKSVAGSTAEVLCGLK--K---GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSD  198 (293)
Q Consensus       125 ~~Vk~~~G~~s~~L~~l~--~---Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~  198 (293)
                      |+||.. |.+|++|++..  .   |++|.+.||+|. |.+... +.+..++++|||||+||||++++++++.... ...+
T Consensus        80 l~vk~~-G~~T~~L~~~~~~~~~~G~~v~v~gP~G~-f~~~~~-~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~  156 (220)
T cd06197          80 ITVRKK-GPVTGFLFQVARRLREQGLEVPVLGVGGE-FTLSLP-GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWD  156 (220)
T ss_pred             EEEEeC-CCCCHHHHHhhhcccCCCceEEEEecCCc-ccCCcc-cccCCceEEEEecccchhhHHHHHHHHHhcccCCCc
Confidence            999998 99999998743  3   999999999997 766521 1135678999999999999999999987543 3578


Q ss_pred             EEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHH
Q 022710          199 VRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSI  278 (293)
Q Consensus       199 v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~  278 (293)
                      ++|+|++|+.++++|.++|.++.+..+....+.+                            ..+|+|||++|++.+.+.
T Consensus       157 v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~----------------------------~~v~~CGP~~m~~~~~~~  208 (220)
T cd06197         157 ITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFIT----------------------------SEVYLCGPPALEKAVLEW  208 (220)
T ss_pred             EEEEEEecchhhHHHHHHHHhccCCceEEEEEEe----------------------------ccEEEECcHHHHHHHHHH
Confidence            9999999999999999999887642222211100                            069999999999999999


Q ss_pred             HHHcCCCccCeecc
Q 022710          279 VLAEGVSSEKILKN  292 (293)
Q Consensus       279 L~~~Gv~~~~I~~~  292 (293)
                      +++.     +||++
T Consensus       209 ~~~~-----~~~~e  217 (220)
T cd06197         209 LEGK-----KVHRE  217 (220)
T ss_pred             hhhc-----eeEec
Confidence            9875     66665

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.8e-32  Score=237.27  Aligned_cols=214  Identities=20%  Similarity=0.313  Sum_probs=178.0

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC---ceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG---KPTFLAIASPPSFASASGAFEFLVKSVA  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~r~ySi~s~p~~~~~~~~~~~~Vk~~~  131 (293)
                      ....++|+..+..+.+++.++.....+     ..+++|||.+|+++..+   .+++|||+++..    ..+++|.||.- 
T Consensus       214 ~~y~~~vt~~~r~~~~t~eit~~l~~~-----~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~----~sel~FsIK~L-  283 (438)
T COG4097         214 FPYLGKVTAPQRGNVDTLEITIGLQGP-----WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE----GSELRFSIKAL-  283 (438)
T ss_pred             cccceEEechhhcCcchheeecccCCc-----ccccCCceEEEEeccccccCCCCCeeeeeCCC----CceEEEEehhh-
Confidence            345788999999999999998887654     23799999999999764   378999999986    55899999988 


Q ss_pred             CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |..|+.|.+ +++|+++++.||||+ |+.++     ...+.|+||||+||||++|+++.+...+....|.|+||+|+.++
T Consensus       284 GD~Tk~l~dnLk~G~k~~vdGPYG~-F~~~~-----g~~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~  357 (438)
T COG4097         284 GDFTKTLKDNLKVGTKLEVDGPYGK-FDFER-----GLNTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEE  357 (438)
T ss_pred             hhhhHHHHHhccCCceEEEecCcce-eeccc-----CCcccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCch
Confidence            999999985 999999999999998 88875     33449999999999999999999987667789999999999999


Q ss_pred             cccHHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710          211 MAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK  288 (293)
Q Consensus       211 ~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~  288 (293)
                      ..|.+||++++++  ++.+|...|+       .+|+++....+.. ...+....+|+|||.+|++.+++.|++.+++-.+
T Consensus       358 ~~y~~eLr~~~qkl~~~~lHiiDSs-------~~g~l~~e~ler~-~~~~~~~sv~fCGP~~m~dsL~r~l~~~~~~i~~  429 (438)
T COG4097         358 ALYAEELRALAQKLPNVVLHIIDSS-------KDGYLDQEDLERY-PDRPRTRSVFFCGPIKMMDSLRRDLKKQNVPITN  429 (438)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEecCC-------CCCccCHHHhhcc-ccccCcceEEEEcCHHHHHHHHHHHHHcCCCHHH
Confidence            9999999999985  6676664333       3567876655521 1223344899999999999999999999999877


Q ss_pred             eecc
Q 022710          289 ILKN  292 (293)
Q Consensus       289 I~~~  292 (293)
                      +|.|
T Consensus       430 ~h~E  433 (438)
T COG4097         430 FHYE  433 (438)
T ss_pred             HHHH
Confidence            7754

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.98  E-value=3e-31  Score=230.29  Aligned_cols=207  Identities=12%  Similarity=0.096  Sum_probs=159.1

Q ss_pred             EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---------------------CceeeEEecCCCCCCCC
Q 022710           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---------------------GKPTFLAIASPPSFASA  119 (293)
Q Consensus        61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---------------------~~~r~ySi~s~p~~~~~  119 (293)
                      |++++++++++++|+|+.++...  ...|.||||+.|.++..                     ...|.|||++.+..   
T Consensus         1 V~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~---   75 (235)
T cd06193           1 VVRVERLTPHMRRITLGGPDLAG--FPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE---   75 (235)
T ss_pred             CceeEecCCCEEEEEEecCcccc--CCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC---
Confidence            56889999999999999764311  24689999999999753                     24689999998754   


Q ss_pred             CCeEEEEEEEeC--CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCC
Q 022710          120 SGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS  197 (293)
Q Consensus       120 ~~~~~~~Vk~~~--G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~  197 (293)
                      ++.++|.||.++  |..|+|++++++||+|.+.||+|. |.+.     ...+++||||||+||+|+++|++++..   ..
T Consensus        76 ~~~l~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~-~~~~-----~~~~~~vlia~GtGi~p~~~il~~~~~---~~  146 (235)
T cd06193          76 AGELDIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGS-FLPP-----PDADWYLLAGDETALPAIAAILEELPA---DA  146 (235)
T ss_pred             CCEEEEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCC-CCCC-----CCcceEEEEeccchHHHHHHHHHhCCC---CC
Confidence            799999998775  689999999999999999999998 4333     146789999999999999999999853   26


Q ss_pred             cEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHH
Q 022710          198 DVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS  277 (293)
Q Consensus       198 ~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~  277 (293)
                      +++++|++++.+++++.+++     .+++++++.+.+...  +..+..   .... ......+..+|+|||++|++.+++
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~-----~~~~~~~~~~~~~~~--~~~~~~---~~~~-~~~~~~~~~vyicGp~~mv~~v~~  215 (235)
T cd06193         147 RGTALIEVPDAADEQPLPAP-----AGVEVTWLHRGGAEA--GELALL---AVRA-LAPPAGDGYVWIAGEAGAVRALRR  215 (235)
T ss_pred             eEEEEEEECCHHHccccCCC-----CCcEEEEEeCCCCCc--chhHHH---HHhc-ccCCCCCeEEEEEccHHHHHHHHH
Confidence            89999999999776544432     267777765543321  111211   1111 122335678999999999999999


Q ss_pred             HHHH-cCCCccCeecc
Q 022710          278 IVLA-EGVSSEKILKN  292 (293)
Q Consensus       278 ~L~~-~Gv~~~~I~~~  292 (293)
                      .|++ .|+++++||++
T Consensus       216 ~l~~~~g~~~~~i~~~  231 (235)
T cd06193         216 HLREERGVPRAQVYAS  231 (235)
T ss_pred             HHHHccCCCHHHEEEE
Confidence            9987 59999999974

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.97  E-value=2.1e-30  Score=258.83  Aligned_cols=203  Identities=21%  Similarity=0.367  Sum_probs=169.6

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L  138 (293)
                      ++|++++.++++++.++|+.+..    ...++||||++|++++.+.+++|||++.+..   ++.++|+||.. |.+|.+|
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~~----~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~---~g~i~~~vk~v-G~~T~~L   73 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPLI----AKSRKPGQFVIVRVGEKGERIPLTIADADPE---KGTITLVIQEV-GLSTTKL   73 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCch----hccCCCCeeEEEEeCCCCCeeEEEeeeeCCC---CCEEEEEEEEc-CchHHHH
Confidence            47899999999999999985421    2468999999999987677789999998865   78999999998 9999999


Q ss_pred             hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710          139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (293)
Q Consensus       139 ~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (293)
                      +++++||+| .+.||+|++|..+      ..++++|||||+||||++++++++.+.+  .+++++|++|+.++++|.++|
T Consensus        74 ~~l~~Gd~v~~v~GP~G~~~~~~------~~~~~llvaGG~GiaPl~~l~~~l~~~~--~~v~l~~g~r~~~~l~~~~el  145 (752)
T PRK12778         74 CELNEGDYITDVVGPLGNPSEIE------NYGTVVCAGGGVGVAPMLPIVKALKAAG--NRVITILGGRSKELIILEDEM  145 (752)
T ss_pred             hcCCCCCEeCeEeCCCCCCccCC------CCCeEEEEECCEeHHHHHHHHHHHHHCC--CeEEEEeccCCHHHhhhHHHH
Confidence            999999999 7999999977543      3478999999999999999999987544  589999999999999999999


Q ss_pred             HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCC-CCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      ++|..+   +++. +  +++|.+..|++.+.+.+.  .... ....+|+|||+.|++.+.+.|++.|++
T Consensus       146 ~~~~~~---~~~~-t--~dg~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~  206 (752)
T PRK12778        146 RESSDE---VIIM-T--DDGSYGRKGLVTDGLEEV--IKRETKVDKVFAIGPAIMMKFVCLLTKKYGIP  206 (752)
T ss_pred             HhhcCe---EEEE-E--CCCCCCCcccHHHHHHHH--hhcCCCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence            998652   2221 2  456778889998876552  2221 235799999999999999999999987

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.97  E-value=6.4e-29  Score=251.03  Aligned_cols=215  Identities=17%  Similarity=0.290  Sum_probs=170.3

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTA  135 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s  135 (293)
                      +..++|++++.++++++.++|+.++.    ...++||||++|+++..+..++|||++.+..   ++.++|+||.+ |..|
T Consensus       648 ~~~~~I~~~~~lt~dv~~~~l~~p~~----~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~---~g~i~l~Vk~v-G~~T  719 (944)
T PRK12779        648 QIPQTIVGKVQLAGGIVEFTVRAPMV----ARSAQAGQFVRVLPWEKGELIPLTLADWDAE---KGTIDLVVQGM-GTSS  719 (944)
T ss_pred             ceEEEEEEEEEecCCEEEEEEeCCCc----cccCCCCceEEEEeCCCCCEEeEEccCCCCC---CCEEEEEEEee-ccHH
Confidence            66899999999999999999986432    2468999999999876667789999998764   78999999988 8888


Q ss_pred             HhhhcCCCCCEEE-EEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          136 EVLCGLKKGDVVE-ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       136 ~~L~~l~~Gd~v~-v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      .+|+++++||++. |.||+|++|.++.   ....+++||||||+||||++++++++.+.+  .+++++|++|+.+++++.
T Consensus       720 ~~L~~lk~Gd~l~~I~GPlG~~f~~~~---~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--~~V~li~G~Rs~edl~~~  794 (944)
T PRK12779        720 LEINRMAIGDAFSGIAGPLGRASELHR---YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--NHVTLISGFRAKEFLFWT  794 (944)
T ss_pred             HHHhcCCCcCEEeeeecCCCCCcCCcc---ccCCCcEEEEEccEeHHHHHHHHHHHHHCC--CCEEEEEEeCCHHHhhhH
Confidence            8999999999995 9999999775542   112468999999999999999999987543  689999999999999988


Q ss_pred             HHHH---HHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhcc-CC-C--CCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710          215 DKFK---EWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI-FN-P--QGTGVVLCGQKQMAEEVTSIVLAEGV  284 (293)
Q Consensus       215 ~~l~---~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~-~~-~--~~~~v~vCGp~~~~~~~~~~L~~~Gv  284 (293)
                      ++++   +|+..   .+++++.  . +++|.+..|++.+.+.+.... .+ .  ....+|+|||+.|++.+.+.|++.|+
T Consensus       795 del~~L~~la~~~~~~~~v~~t--t-ddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~Gv  871 (944)
T PRK12779        795 GDDERVGKLKAEFGDQLDVIYT--T-NDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYGV  871 (944)
T ss_pred             HHHHHHHHHHHHcCCCeEEEEE--e-cCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence            7654   45442   2344433  2 345677889998876542111 10 1  13679999999999999999999999


Q ss_pred             Cc
Q 022710          285 SS  286 (293)
Q Consensus       285 ~~  286 (293)
                      +.
T Consensus       872 ~~  873 (944)
T PRK12779        872 KT  873 (944)
T ss_pred             Ce
Confidence            86

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=249.59  Aligned_cols=202  Identities=19%  Similarity=0.308  Sum_probs=167.2

Q ss_pred             eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (293)
Q Consensus        59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L  138 (293)
                      ++|++++.++++++.++|+.++.    ...++|||||+|++++.+.+++|||++.+..   .+.++|.||.. |.+|+||
T Consensus         2 ~~I~~~~~l~~~~~~l~l~ap~~----a~~~~PGQFV~l~~~~~~errplSIa~~~~~---~g~i~l~vk~v-G~~T~~L   73 (1006)
T PRK12775          2 YSIVRREAFSDTTFLWEVEAPDV----AASAEPGHFVMLRLYEGAERIPLTVADFDRK---KGTITMVVQAL-GKTTREM   73 (1006)
T ss_pred             cEEEEEEEecCCEEEEEEecCCc----ccCCCCCeeEEEEeCCCCeeEEEEecCcCCC---CCEEEEEEEec-CcHHHHH
Confidence            46899999999999999986542    3578999999999977667789999987754   78999999997 9999998


Q ss_pred             -hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 022710          139 -CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK  216 (293)
Q Consensus       139 -~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~  216 (293)
                       .++++||.| .+.||+|++|..+      ..+++||||||+||||++++++++.+.+  .+++++|++|+.++++|.++
T Consensus        74 ~~~lk~Gd~l~~v~GPlG~~~~~~------~~~~vllVaGGiGIAPl~s~~r~l~~~g--~~v~li~g~R~~~~l~~~de  145 (1006)
T PRK12775         74 MTKFKAGDTFEDFVGPLGLPQHID------KAGHVVLVGGGLGVAPVYPQLRAFKEAG--ARTTGIIGFRNKDLVFWEDK  145 (1006)
T ss_pred             HhcCCCCCEEeeeecCCCCCCCCC------CCCeEEEEEEhHHHHHHHHHHHHHHhCC--CcEEEEEeCCChHHcccHHH
Confidence             489999999 7999999976543      4578999999999999999999986544  67999999999999999999


Q ss_pred             HHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710          217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV  284 (293)
Q Consensus       217 l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv  284 (293)
                      |+.+.. .  +++  +. +++|.+..|++.+.+.+.  ........+|+|||+.|++.+.+.+++.|+
T Consensus       146 l~~~~~-~--~~v--~t-ddgs~G~~G~vt~~l~~~--l~~~~~d~vy~CGP~~Mm~av~~~~~~~gi  205 (1006)
T PRK12775        146 FGKYCD-D--LIV--CT-DDGSYGKPGFVTAALKEV--CEKDKPDLVVAIGPLPMMNACVETTRPFGV  205 (1006)
T ss_pred             HHhhcC-c--EEE--EE-CCCCCCCCCChHHHHHHH--hccCCCCEEEEECCHHHHHHHHHHHHHCCC
Confidence            988754 2  222  22 455778889998877652  222233579999999999999999999999

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.96  E-value=2e-29  Score=214.57  Aligned_cols=229  Identities=26%  Similarity=0.446  Sum_probs=193.1

Q ss_pred             cCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC----------------------------
Q 022710           51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----------------------------  102 (293)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~----------------------------  102 (293)
                      .+-++| .++|++..+.+.=+..+.|.+++..   .-.|+||-|+++..|--                            
T Consensus       130 fgvkkW-ectViSNdN~ATFIKEL~laip~g~---~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~  205 (410)
T COG2871         130 FGVKKW-ECTVISNDNKATFIKELKLAIPEGE---EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSK  205 (410)
T ss_pred             cCccce-eEEEEeCCchhhhhhhheeeCCCCC---ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeecc
Confidence            344556 7899999888888888899887654   35789999999999721                            


Q ss_pred             ---CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCC
Q 022710          103 ---GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP  169 (293)
Q Consensus       103 ---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~  169 (293)
                         ...|.||.++-|.+   .+.+.|-|+..          +|.+|.|+.+|++||+|.++||||.+|--+      ...
T Consensus       206 v~e~~~rAYSmAsYPeE---~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd------tda  276 (410)
T COG2871         206 VDEPIIRAYSMASYPEE---KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD------TDA  276 (410)
T ss_pred             ccHHHHHHhhhhcChhh---cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhcc------CCC
Confidence               01245899999987   89999999864          278899999999999999999999976433      677


Q ss_pred             eEEEEEeCcchhHHHHHHHHhh-ccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecC--CCCCCccccc
Q 022710          170 TVLIFATGSGISPIRSLIESGF-SSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGY  244 (293)
Q Consensus       170 ~ivlia~GtGIaP~~sll~~~~-~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~  244 (293)
                      .+|+|+||.|.+|++|.|-..+ .....++++++|++|+..+++|++++++++..  ||++|.++|.+  .++|.+..|+
T Consensus       277 emvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgF  356 (410)
T COG2871         277 EMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGF  356 (410)
T ss_pred             ceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhH
Confidence            8999999999999999877665 34567899999999999999999999999875  89999999875  5689999999


Q ss_pred             cchHHHhh--hccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          245 VQAAFSRA--KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       245 v~~~~~~~--~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      +..++.+.  +.+..+.+..+|+|||+-|...+.+.|...||..++|..+
T Consensus       357 ihnv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGVE~enIlLD  406 (410)
T COG2871         357 IHNVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGVERENILLD  406 (410)
T ss_pred             HHHHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCccccceeec
Confidence            99887763  2356678899999999999999999999999999999764

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.96  E-value=1.6e-28  Score=209.40  Aligned_cols=187  Identities=19%  Similarity=0.297  Sum_probs=147.8

Q ss_pred             eeeCC-CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---CceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhh
Q 022710           64 ISPAA-ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC  139 (293)
Q Consensus        64 ~~~~~-~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~  139 (293)
                      ++.++ +++++++|..+.     ...|+||||++|+++..   .+.|+|||++.+..  +.+.++|+||..+|.+++.+.
T Consensus         4 ~~~~~~~~~~~l~~~~~~-----~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~--~~~~i~~~vk~~~G~~t~~~~   76 (210)
T cd06186           4 VELLPDSDVIRLTIPKPK-----PFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPED--EQDTLSLIIRAKKGFTTRLLR   76 (210)
T ss_pred             EEEecCCCEEEEEEecCC-----CCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCC--CCCEEEEEEEecCChHHHHHH
Confidence            44455 899999998642     25789999999999965   36799999999861  028999999998788887777


Q ss_pred             cCC------CCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC----CCCcEEEEEccCCcc
Q 022710          140 GLK------KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----ERSDVRLYYGARNLK  209 (293)
Q Consensus       140 ~l~------~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~----~~~~v~l~~~~r~~~  209 (293)
                      .++      .|+++.+.||||.++ ..    ...++++||||||+||||++++++++....    ...+++++|++|+.+
T Consensus        77 ~~~~~~~~~~~~~v~v~GP~G~~~-~~----~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~  151 (210)
T cd06186          77 KALKSPGGGVSLKVLVEGPYGSSS-ED----LLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE  151 (210)
T ss_pred             HHHhCcCCCceeEEEEECCCCCCc-cC----hhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH
Confidence            776      899999999999844 11    126789999999999999999999998654    467999999999999


Q ss_pred             c-cccHHHHHH---HHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          210 R-MAYQDKFKE---WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       210 ~-~~~~~~l~~---l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      + .+|.++|..   +.... +++.++++                             +|+|||.+|++.+++.+.+.+..
T Consensus       152 ~~~~~~~~l~~~~~~~~~~-~~~i~~T~-----------------------------v~~CGp~~~~~~~~~~~~~~~~~  201 (210)
T cd06186         152 DLEWFLDELRAAQELEVDG-EIEIYVTR-----------------------------VVVCGPPGLVDDVRNAVAKKGGT  201 (210)
T ss_pred             HhHHHHHHHHhhhhccCCc-eEEEEEee-----------------------------EEEECchhhccHHHHHHhhcCCC
Confidence            9 489999975   22211 34444444                             99999999999999999887766


Q ss_pred             ccCeecc
Q 022710          286 SEKILKN  292 (293)
Q Consensus       286 ~~~I~~~  292 (293)
                      ...++.+
T Consensus       202 ~~~~~~e  208 (210)
T cd06186         202 GVEFHEE  208 (210)
T ss_pred             ceEEEee
Confidence            6665544

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.94  E-value=3.5e-26  Score=210.02  Aligned_cols=183  Identities=23%  Similarity=0.445  Sum_probs=145.4

Q ss_pred             cCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCC
Q 022710           87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG  156 (293)
Q Consensus        87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~  156 (293)
                      ..+.+|||+.+..+  ..+|+|||+|+|..  .++.++|+|+.+         .|..|+||++ +++||+|.+.+|.|..
T Consensus       130 ~~~~~gq~l~l~~~--~~~R~YSIaSsp~~--~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~~  205 (360)
T cd06199         130 ARLTAEELLDLLRP--LQPRLYSIASSPKA--VPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPH  205 (360)
T ss_pred             CCCCHHHHHHhCcC--CCCcceeeccCccc--CCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCCC
Confidence            57799999999865  57899999999952  147899999865         4889999997 4699999999866544


Q ss_pred             ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHhC--CcEEEEEEec
Q 022710          157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQ  233 (293)
Q Consensus       157 f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~i~~~~~~s~  233 (293)
                      |.+..    +...+++|||+||||||+++++++........++.|+|++|+. ++++|+++|++|...  +++++.++|+
T Consensus       206 F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr  281 (360)
T cd06199         206 FRLPE----DPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSR  281 (360)
T ss_pred             cCCCC----CCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence            86642    3467999999999999999999998755556789999999997 699999999999875  4578888898


Q ss_pred             CCCCCCccccccchHHHhhhccC---CCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710          234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEEVTSIVLA  281 (293)
Q Consensus       234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~v~vCGp~-~~~~~~~~~L~~  281 (293)
                      ++.    ..+++++.+.+.....   -..+..+|+|||+ .|+++++++|.+
T Consensus       282 ~~~----~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~  329 (360)
T cd06199         282 DQA----EKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLD  329 (360)
T ss_pred             CCC----CCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHH
Confidence            653    3578888766532110   1245889999999 899998888754

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.93  E-value=1e-25  Score=208.84  Aligned_cols=188  Identities=22%  Similarity=0.437  Sum_probs=145.5

Q ss_pred             CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe-----------CCcchHhhhcCCCCCEEEE--EeecC
Q 022710           88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEI--SQVMG  154 (293)
Q Consensus        88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v--~gP~G  154 (293)
                      ....||++.+.-+  ..+|+|||+|+|..  .++.++|.|+.+           .|..|+||+++++||+|.+  .+|+|
T Consensus       146 ~~~~~~~l~~~p~--l~~R~YSIaSsp~~--~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g  221 (384)
T cd06206         146 ALPLATFLAMLPP--MRPRQYSISSSPLV--DPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS  221 (384)
T ss_pred             CCCHHHHHHhCcc--cCCcceeeccCccC--CCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence            4577999998732  57899999999852  146677777653           3789999999999999986  57888


Q ss_pred             CCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHhC-CcEEE
Q 022710          155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS-GVKIV  228 (293)
Q Consensus       155 ~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-~i~~~  228 (293)
                      . |.++.    +..+++||||+||||||+++++++....    ....++.|+|++|+. ++++|+++|++|+.. +++++
T Consensus       222 ~-F~l~~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~l~  296 (384)
T cd06206         222 A-FRPPS----DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVVSVR  296 (384)
T ss_pred             c-cCCCC----CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCeEEE
Confidence            7 76642    3567999999999999999999987532    234689999999999 799999999999874 67888


Q ss_pred             EEEecCCCCCCccccccchHHHhhhc-c--CCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          229 PVLSQPDGNWSGETGYVQAAFSRAKK-I--FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       229 ~~~s~~~~~~~~~~g~v~~~~~~~~~-~--~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      +++++++..   .++++++.+.+... .  ....+..+|+|||+.|++++.+.|.+.+....
T Consensus       297 ~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~~~~~  355 (384)
T cd06206         297 RAYSRPPGG---GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVREVLKRIYAEKD  355 (384)
T ss_pred             EEecccCCC---CCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHHHHHHHHHHHhC
Confidence            898886432   35788876644211 1  01246889999999999999999988766543

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.93  E-value=3.4e-25  Score=205.24  Aligned_cols=173  Identities=24%  Similarity=0.413  Sum_probs=139.1

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEE
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL  172 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~iv  172 (293)
                      ..+|+|||+|+|..  +++.++|+|+.+          .|..|+||+++++||+|.+.+|.|. |.+..    +...++|
T Consensus       162 l~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~-F~lp~----~~~~plI  234 (382)
T cd06207         162 IKPRYYSISSSPLK--NPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSS-FKLPK----DPKKPII  234 (382)
T ss_pred             CCCceeeecCCCcC--CCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCc-ccCCC----CCCCCEE
Confidence            57899999999952  158899999875          3789999999999999999999997 76642    3467999


Q ss_pred             EEEeCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCCcccccc
Q 022710          173 IFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYV  245 (293)
Q Consensus       173 lia~GtGIaP~~sll~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~~g~v  245 (293)
                      |||+||||||+++++++....    ....++.|+|++|+. ++++|+++|++|...+  +++++.+|+++.    .++|+
T Consensus       235 mIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~----~~~yV  310 (382)
T cd06207         235 MVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP----KKVYV  310 (382)
T ss_pred             EEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC----CceEh
Confidence            999999999999999987532    345789999999999 8999999999998763  578888888653    36788


Q ss_pred             chHHHhhhc----cCCCCCcEEEEeCChH-HHHHHHHHHHHcCCCc
Q 022710          246 QAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEEVTSIVLAEGVSS  286 (293)
Q Consensus       246 ~~~~~~~~~----~~~~~~~~v~vCGp~~-~~~~~~~~L~~~Gv~~  286 (293)
                      ++.+.+...    ........+|+|||+. |++.+.+.|.+.+...
T Consensus       311 q~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~  356 (382)
T cd06207         311 QDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKH  356 (382)
T ss_pred             HHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHh
Confidence            887654211    1222345899999998 9999999998876543

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.93  E-value=2.8e-25  Score=215.75  Aligned_cols=183  Identities=22%  Similarity=0.399  Sum_probs=147.4

Q ss_pred             cCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCC
Q 022710           87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG  156 (293)
Q Consensus        87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~  156 (293)
                      ..+.||||+.+..+  ..+|+|||+|+|..  .++.++|+|+.+         .|..|.||++ +++||+|.+.+|.|..
T Consensus       367 ~~~~~gq~v~ll~~--~~~R~YSIaSsp~~--~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~  442 (597)
T TIGR01931       367 ADLDAEQLISLLRP--LTPRLYSISSSQSE--VGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDN  442 (597)
T ss_pred             CCCCHHHHHHhCcc--cCCceeeeccCccc--CCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCc
Confidence            46899999999876  57899999999852  157899999864         3899999997 9999999999876645


Q ss_pred             ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCC--cEEEEEEec
Q 022710          157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQ  233 (293)
Q Consensus       157 f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--i~~~~~~s~  233 (293)
                      |.++.    +...+++|||+||||||+++++++....+...++.||||+|+ .++++|++||++|...+  .+++..+|+
T Consensus       443 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR  518 (597)
T TIGR01931       443 FRLPE----DPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR  518 (597)
T ss_pred             ccCCC----CCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence            86652    346789999999999999999999876666678999999999 67999999999998764  367778887


Q ss_pred             CCCCCCccccccchHHHhhhcc----CCCCCcEEEEeC-ChHHHHHHHHHHHHc
Q 022710          234 PDGNWSGETGYVQAAFSRAKKI----FNPQGTGVVLCG-QKQMAEEVTSIVLAE  282 (293)
Q Consensus       234 ~~~~~~~~~g~v~~~~~~~~~~----~~~~~~~v~vCG-p~~~~~~~~~~L~~~  282 (293)
                      +.    +.++|+++.+.+....    .. .+..+|+|| ++.|++.+.++|.+.
T Consensus       519 d~----~~k~yVqd~l~e~~~~~~~~l~-~~a~vYvCG~~~~M~~~V~~~L~~i  567 (597)
T TIGR01931       519 DQ----AEKIYVQHRIREQGAELWQWLQ-EGAHIYVCGDAKKMAKDVHQALLDI  567 (597)
T ss_pred             CC----CCCccHHHHHHHhHHHHHHHHh-CCcEEEEECCCccccHHHHHHHHHH
Confidence            43    2478999887753211    11 357899999 889999999988654

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>PLN02292 ferric-chelate reductase

Probab=99.92  E-value=8.2e-24  Score=205.90  Aligned_cols=200  Identities=14%  Similarity=0.139  Sum_probs=150.6

Q ss_pred             eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeCCcc
Q 022710           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGST  134 (293)
Q Consensus        57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~  134 (293)
                      ..+++++++.+++++.+++++.++     ...++||||+++++|+.  .+.|+|||++.|..  +++.++|+||.. |.+
T Consensus       325 ~~~~Iv~~~~l~~dvv~L~~~~~~-----~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~--~~~~l~l~IK~~-G~~  396 (702)
T PLN02292        325 NNVKLVSARVLPCDTVELNFSKNP-----MLMYSPTSIMFVNIPSISKLQWHPFTITSSSKL--EPEKLSVMIKSQ-GKW  396 (702)
T ss_pred             cceEEEEEEEcCCCEEEEEEEcCC-----CCCcCCCCeEEEEEccCCccceeeeEeeccCCC--CCCEEEEEEEcC-Cch
Confidence            468899999999999999998542     24789999999999864  46799999998741  167899999986 888


Q ss_pred             hHhhhc-CCCCCE-----EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-----CCcEEEEE
Q 022710          135 AEVLCG-LKKGDV-----VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYY  203 (293)
Q Consensus       135 s~~L~~-l~~Gd~-----v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-----~~~v~l~~  203 (293)
                      |++|.+ ++.||.     |.++||||..+ .+.    ..++++++||||+||||++++++++.+...     .++++++|
T Consensus       397 T~~L~~~l~~gd~i~~~~V~VeGPYG~~~-~~~----~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw  471 (702)
T PLN02292        397 STKLYHMLSSSDQIDRLAVSVEGPYGPAS-TDF----LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC  471 (702)
T ss_pred             hHHHHHhCCCCCccccceEEEECCccCCc-ccc----ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEE
Confidence            888875 788884     57999999843 221    256799999999999999999999975431     26899999


Q ss_pred             ccCCccccccHHHHHH-------HHh-CCcEEEEEEecCCCCCC-ccccccchHHHhhhccCCC--CCcEEEEeCChHH
Q 022710          204 GARNLKRMAYQDKFKE-------WES-SGVKIVPVLSQPDGNWS-GETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQM  271 (293)
Q Consensus       204 ~~r~~~~~~~~~~l~~-------l~~-~~i~~~~~~s~~~~~~~-~~~g~v~~~~~~~~~~~~~--~~~~v~vCGp~~~  271 (293)
                      ++|+.+|+.+.|++.+       +.+ .++++..+++++++... +..|  ++...++....+.  +++...+|||++-
T Consensus       472 ~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~  548 (702)
T PLN02292        472 AFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSW  548 (702)
T ss_pred             EECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCch
Confidence            9999999988876643       222 37888888888765432 1223  4444432222222  6789999999753

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.92  E-value=4.5e-24  Score=198.51  Aligned_cols=170  Identities=21%  Similarity=0.398  Sum_probs=135.7

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEeC----CcchHhhhcCC-----CCCEEEEEe-ecCCCccccCCCCCC-CCCeE
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSVA----GSTAEVLCGLK-----KGDVVEISQ-VMGRGFAVDRIQPPD-EYPTV  171 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~----G~~s~~L~~l~-----~Gd~v~v~g-P~G~~f~l~~~~p~~-~~~~i  171 (293)
                      ..+|+|||+|+|..  .++.++|+|+.+.    |..|+||++++     +|++|.+.+ |.| .|.++.    + ...++
T Consensus       172 ~~~R~YSIsSsp~~--~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g-~F~lp~----~~~~~pi  244 (398)
T cd06203         172 LQPRPYSIASSPLE--GPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSS-RFRLPP----DDLRRPI  244 (398)
T ss_pred             CCCcceeecCCccc--CCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCC-CcCCCC----cCCCCCE
Confidence            56899999999952  1488999998864    78999999987     999999998 455 487653    2 35789


Q ss_pred             EEEEeCcchhHHHHHHHHhhc------cCCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCCccc
Q 022710          172 LIFATGSGISPIRSLIESGFS------SKERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGET  242 (293)
Q Consensus       172 vlia~GtGIaP~~sll~~~~~------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~~  242 (293)
                      +|||+||||||+++++++...      .....++.||||+|+. ++++|+++|++|...+  .++++++|++++.+ +.+
T Consensus       245 ImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g~k  323 (398)
T cd06203         245 IMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-STP  323 (398)
T ss_pred             EEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-CCc
Confidence            999999999999999998764      2345789999999999 6999999999998763  46888899876543 567


Q ss_pred             cccchHHHhhhc----cCCCCCcEEEEeCC-hHHHHHHHHHHH
Q 022710          243 GYVQAAFSRAKK----IFNPQGTGVVLCGQ-KQMAEEVTSIVL  280 (293)
Q Consensus       243 g~v~~~~~~~~~----~~~~~~~~v~vCGp-~~~~~~~~~~L~  280 (293)
                      +||++.+.+...    .....+..+|+||| +.|.++++++|.
T Consensus       324 ~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~  366 (398)
T cd06203         324 KYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFV  366 (398)
T ss_pred             eecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHH
Confidence            999988765321    11235688999999 579899988886

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.91  E-value=9e-24  Score=196.88  Aligned_cols=170  Identities=26%  Similarity=0.461  Sum_probs=132.6

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCe
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT  170 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~  170 (293)
                      .++|+|||+|+|..  .++.++|.|+.+            .|..|+||+++++||+|.+.++.+..|.++.    +...+
T Consensus       175 l~pR~YSIsSsp~~--~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~----~~~~p  248 (406)
T cd06202         175 LQPRYYSISSSPDM--YPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE----DPSVP  248 (406)
T ss_pred             cCCcccccCCCccC--CCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCC----CCCCC
Confidence            57899999999852  146677777653            3789999999999999999886554586652    35679


Q ss_pred             EEEEEeCcchhHHHHHHHHhhc--------cCCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCC
Q 022710          171 VLIFATGSGISPIRSLIESGFS--------SKERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWS  239 (293)
Q Consensus       171 ivlia~GtGIaP~~sll~~~~~--------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~  239 (293)
                      +||||+||||||+++++++...        .....++.|+||+|+. ++.+|++||++|...+  .++++++|+++..  
T Consensus       249 iImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~--  326 (406)
T cd06202         249 VIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGK--  326 (406)
T ss_pred             EEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCC--
Confidence            9999999999999999998532        1235789999999999 7899999999998764  4688889986432  


Q ss_pred             ccccccchHHHhhhcc----CCCCCcEEEEeCChHHHHHHHHHHHH
Q 022710          240 GETGYVQAAFSRAKKI----FNPQGTGVVLCGQKQMAEEVTSIVLA  281 (293)
Q Consensus       240 ~~~g~v~~~~~~~~~~----~~~~~~~v~vCGp~~~~~~~~~~L~~  281 (293)
                       .++|+++.+.+....    ....+..+|+|||+.|++++.+.|.+
T Consensus       327 -~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~  371 (406)
T cd06202         327 -PKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQR  371 (406)
T ss_pred             -CCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHH
Confidence             368999887653211    12357889999999999998888754

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.91  E-value=1.4e-23  Score=203.23  Aligned_cols=183  Identities=21%  Similarity=0.366  Sum_probs=144.8

Q ss_pred             cCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCC
Q 022710           87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG  156 (293)
Q Consensus        87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~  156 (293)
                      ..+.+|||+.+..+  ..+|+|||+|+|..  .++.++|.|+.+         .|..|.||++ +++||+|.+.+|.|..
T Consensus       370 ~~~~~~q~l~ll~~--l~pR~YSIaSsp~~--~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~  445 (600)
T PRK10953        370 AQLDAEQLIGLLRP--LTPRLYSIASSQAE--VENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHNDN  445 (600)
T ss_pred             CCCCHHHHHHhCCC--CCCeeeecccCCCC--CCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCCc
Confidence            36799999999876  56899999999852  157888887543         3778999985 9999999999988755


Q ss_pred             ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCCc--EEEEEEec
Q 022710          157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSGV--KIVPVLSQ  233 (293)
Q Consensus       157 f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~i--~~~~~~s~  233 (293)
                      |.+..    +...+++|||+||||||+++++++........++.||||+|+ ..+++|++||++|...+.  ++...+||
T Consensus       446 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR  521 (600)
T PRK10953        446 FRLPA----NPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR  521 (600)
T ss_pred             ccCCC----CCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence            86652    356799999999999999999999876666689999999999 668999999999998754  57788888


Q ss_pred             CCCCCCccccccchHHHhhhccC---CCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710          234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEEVTSIVLA  281 (293)
Q Consensus       234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~v~vCGp~-~~~~~~~~~L~~  281 (293)
                      ++.    .++||++.+.+.....   -..+..+|+||+. .|.+++.++|.+
T Consensus       522 d~~----~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~  569 (600)
T PRK10953        522 DQK----EKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLE  569 (600)
T ss_pred             CCC----CCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHH
Confidence            653    4789998776532110   0246889999996 587888887754

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.89  E-value=2e-22  Score=188.33  Aligned_cols=168  Identities=22%  Similarity=0.431  Sum_probs=131.9

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEeC----------CcchHhhhcCC---------------------CCCEEEEEe
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLK---------------------KGDVVEISQ  151 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~----------G~~s~~L~~l~---------------------~Gd~v~v~g  151 (293)
                      ..+|+|||+|+|..  +++.++|+|+.+.          |..|+||+++.                     +||+|.+..
T Consensus       176 ~~pR~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~  253 (416)
T cd06204         176 LQPRYYSISSSSKV--HPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFV  253 (416)
T ss_pred             CCCcceeeccCccC--CCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEE
Confidence            57899999999953  1578999888541          77899999866                     899999999


Q ss_pred             ecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHhC--C
Q 022710          152 VMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS--G  224 (293)
Q Consensus       152 P~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~  224 (293)
                      |.|. |.++.    +...++||||+||||||+++++++....    ....++.|+||+|+. ++++|+++|++|...  +
T Consensus       254 ~~g~-F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~  328 (416)
T cd06204         254 RRSN-FRLPT----KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGL  328 (416)
T ss_pred             ecCC-CCCCC----CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCc
Confidence            9997 76642    3468999999999999999999986421    234689999999999 789999999999875  5


Q ss_pred             cEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCChH-HHHHHHHHHHHc
Q 022710          225 VKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEEVTSIVLAE  282 (293)
Q Consensus       225 i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~~-~~~~~~~~L~~~  282 (293)
                      ++++..+|++++    .++++++.+.+...    ... ....+|+|||+. |++.+.+.|.+.
T Consensus       329 ~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~-~~~~vYvCGp~~~M~~~V~~~L~~i  386 (416)
T cd06204         329 LELVTAFSREQP----KKVYVQHRLAEHAEQVWELIN-EGAYIYVCGDAKNMARDVEKTLLEI  386 (416)
T ss_pred             eEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHH-cCCEEEEECCcccchHHHHHHHHHH
Confidence            788888888543    46788877654211    111 357899999998 999988888653

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PRK06214 sulfite reductase; Provisional

Probab=99.89  E-value=2.4e-22  Score=191.03  Aligned_cols=169  Identities=23%  Similarity=0.467  Sum_probs=127.6

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEE
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL  172 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~iv  172 (293)
                      .++|+|||+|.|..  .++.++|+||.+         .|..|+||+ .+++||+|.+.++.+.+|.++.    +...++|
T Consensus       314 l~pR~YSISSsP~~--~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~gF~lp~----~~~~PiI  387 (530)
T PRK06214        314 LQPRLYSISSSPKA--TPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHGFALPA----DPNTPII  387 (530)
T ss_pred             CCcEEEEeccCCcC--CCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCCCccCC----CCCCCEE
Confidence            57899999999852  157899999865         378899998 6999999999764333376642    3457899


Q ss_pred             EEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCCc--EEEEEEecCCCCCCccccccchHH
Q 022710          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSGV--KIVPVLSQPDGNWSGETGYVQAAF  249 (293)
Q Consensus       173 lia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~i--~~~~~~s~~~~~~~~~~g~v~~~~  249 (293)
                      |||+||||||+++++++........++.|||++|. ..+++|+++|++|...+.  ++++.+|++..    .++|+++.+
T Consensus       388 mIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~----~k~YVQ~~L  463 (530)
T PRK06214        388 MVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGE----EKTYVQDRM  463 (530)
T ss_pred             EEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCC----CCCchhhHH
Confidence            99999999999999998765445578999999965 568999999999987643  57777887643    357888776


Q ss_pred             Hhhhc-c--CCCCCcEEEEeCChH-HHHHHHHHHHH
Q 022710          250 SRAKK-I--FNPQGTGVVLCGQKQ-MAEEVTSIVLA  281 (293)
Q Consensus       250 ~~~~~-~--~~~~~~~v~vCGp~~-~~~~~~~~L~~  281 (293)
                      .+... +  .-..+..+|+|||.. |.+++++.|.+
T Consensus       464 ~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~  499 (530)
T PRK06214        464 RENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVD  499 (530)
T ss_pred             HHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHH
Confidence            54211 1  012467899999975 55888887754

>PLN02631 ferric-chelate reductase

Probab=99.89  E-value=6.9e-22  Score=192.18  Aligned_cols=165  Identities=18%  Similarity=0.243  Sum_probs=132.4

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA  135 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s  135 (293)
                      .+++++++.+++++.++++..+  +   ...++||||++|++|..  .+.|+|||++.|..  +++.++|+||.. |.+|
T Consensus       309 ~~~lv~~~~l~~d~l~l~~~~~--~---~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~--~~~~L~~~IK~~-Gg~T  380 (699)
T PLN02631        309 RSRLVSARILPSDNLELTFSKT--P---GLHYTPTSILFLHVPSISKLQWHPFTITSSSNL--EKDTLSVVIRRQ-GSWT  380 (699)
T ss_pred             eEEEEEEEEeCCCeEEEEEEcC--C---CCcCCCCceEEEEeccCCccceEEEEEeccCCC--CCCEEEEEEEcC-ChHH
Confidence            3678888888899999888742  2   24789999999999964  46799999998742  157899999986 8999


Q ss_pred             Hhhhc-CCC-CC--EEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-----CCcEEEEEccC
Q 022710          136 EVLCG-LKK-GD--VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYYGAR  206 (293)
Q Consensus       136 ~~L~~-l~~-Gd--~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-----~~~v~l~~~~r  206 (293)
                      ++|.+ ++. ||  ++.++||||. +..+    ...++++|+||||+||||++++++++.....     ..+++|+|++|
T Consensus       381 ~~L~~~l~~~g~~i~V~VeGPYG~-~~~~----~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR  455 (699)
T PLN02631        381 QKLYTHLSSSIDSLEVSTEGPYGP-NSFD----VSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFK  455 (699)
T ss_pred             HHHHHhhhcCCCeeEEEEECCCCC-CCCC----cCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEEC
Confidence            99975 654 45  6788999996 4322    1367899999999999999999999975321     24799999999


Q ss_pred             CccccccHHHHHH-------HHhCCcEEEEEEecCC
Q 022710          207 NLKRMAYQDKFKE-------WESSGVKIVPVLSQPD  235 (293)
Q Consensus       207 ~~~~~~~~~~l~~-------l~~~~i~~~~~~s~~~  235 (293)
                      +.++++|.|+|+.       +++.+++++.++||++
T Consensus       456 ~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~  491 (699)
T PLN02631        456 HYHDLAFLDLIFPLDISVSDISRLNLRIEAYITRED  491 (699)
T ss_pred             CHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCC
Confidence            9999999999986       5555899999999864

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.88  E-value=3.1e-21  Score=188.52  Aligned_cols=194  Identities=14%  Similarity=0.204  Sum_probs=141.3

Q ss_pred             eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV  137 (293)
Q Consensus        60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~  137 (293)
                      .+++++..+++++++++..+  +   ...|+||||++|.+|..+  +.|+|||+|.|..  +++.++|.||.. |..|+.
T Consensus       315 ~vvs~~~~~~~~v~l~i~r~--~---~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~--~~~~l~~~IK~~-gG~T~~  386 (722)
T PLN02844        315 CILSARLFPCKAIELVLPKD--P---GLKYAPTSVIFMKIPSISRFQWHPFSITSSSNI--DDHTMSVIIKCE-GGWTNS  386 (722)
T ss_pred             EEEEEEEecCCEEEEEEECC--C---CCCcCCCeeEEEEECCCCceeEEEEEeecCCCC--CCCeEEEEEEeC-CCchHH
Confidence            35566777788888887642  2   257899999999999654  6899999997631  167899999987 656665


Q ss_pred             hhc-----CCCC------CEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-----CCcEEE
Q 022710          138 LCG-----LKKG------DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRL  201 (293)
Q Consensus       138 L~~-----l~~G------d~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-----~~~v~l  201 (293)
                      |.+     +++|      .++.++||||. +..+.    ..++++++||||+||||++++++++...++     ..++.|
T Consensus       387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~-~s~~~----~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~L  461 (722)
T PLN02844        387 LYNKIQAELDSETNQMNCIPVAIEGPYGP-ASVDF----LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQL  461 (722)
T ss_pred             HHHHHHhhccCCCCcccceEEEEECCccC-CCCCc----cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEE
Confidence            532     3344      37899999997 54432    256899999999999999999999975332     368999


Q ss_pred             EEccCCccccccHHHHHH-----HHh-CCcEEEEEEecCCCCCCccccccchHHHhh----hccCCCCCcEEEEeCChH
Q 022710          202 YYGARNLKRMAYQDKFKE-----WES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRA----KKIFNPQGTGVVLCGQKQ  270 (293)
Q Consensus       202 ~~~~r~~~~~~~~~~l~~-----l~~-~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~~v~vCGp~~  270 (293)
                      +|++|+.+++.+.+++..     +.+ .++++++++|+++...    .++.+.+..-    ....+++...+.+||+.+
T Consensus       462 Iw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~----~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~  536 (722)
T PLN02844        462 IYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPN----ATLRELLNQFSQVQTVNFSTKCSRYAIHGLES  536 (722)
T ss_pred             EEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCC----CchhhHhhccchhhhcCCCCCCCceEEeCCCc
Confidence            999999999999999862     122 3788999999876532    2444433321    122456677899999964

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.88  E-value=1.5e-22  Score=171.50  Aligned_cols=215  Identities=20%  Similarity=0.290  Sum_probs=154.1

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCc------eeeEEecCCCCCCCCCCeEEEEEE
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK------PTFLAIASPPSFASASGAFEFLVK  128 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~------~r~ySi~s~p~~~~~~~~~~~~Vk  128 (293)
                      .|.+++|.+.+.++.|+..+.+...++ .+..++..|||||.+...-.+.      .+.||.++...    .+.++|.||
T Consensus       148 G~~~F~vT~~~~~sSDv~~~~~~PK~~-~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~----rN~~R~sVr  222 (385)
T KOG3378|consen  148 GEVEFKVTELINESSDVKSVYLGPKDP-AFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTC----RNQFRISVR  222 (385)
T ss_pred             CccceeeeeeeccccceeEEEecCCCc-ceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhh----ccceeEEEe
Confidence            588999999999999999999987654 5667788999999998764432      23466666665    789999999


Q ss_pred             EeCC-cchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccC
Q 022710          129 SVAG-STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR  206 (293)
Q Consensus       129 ~~~G-~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r  206 (293)
                      +..| -.|+++| ++++||.|.++.|-|+ |.+.+-. .+..++++++|||+||||++++|+..+.         .|.+|
T Consensus       223 ~~A~G~VS~~~H~~~KVGD~v~~S~PAG~-F~~~r~~-~~~N~PL~~~a~GiGiTPLi~iiE~~~~---------C~~~R  291 (385)
T KOG3378|consen  223 RVAGGVVSNFVHDNLKVGDIVGVSPPAGN-FVYKRSE-ENVNRPLLCFAGGIGITPLIPIIETALL---------CYSSR  291 (385)
T ss_pred             ehhchhhHHHhhccccccceeeccCCCcc-ceeehhh-hccCCceEEecCCcCccccHHHHHHHHh---------cCCCC
Confidence            9875 7899998 5999999999999998 7665422 2345899999999999999999998752         34444


Q ss_pred             CccccccHHHHHHHHhC---CcEEEEEEecC----CC--CCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHH
Q 022710          207 NLKRMAYQDKFKEWESS---GVKIVPVLSQP----DG--NWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS  277 (293)
Q Consensus       207 ~~~~~~~~~~l~~l~~~---~i~~~~~~s~~----~~--~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~  277 (293)
                           +|..-++++..+   +.+..-.++.+    +.  -.......+++.+.+   ..+....++|.|||..+|+.+..
T Consensus       292 -----P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~---~~~~s~~DiY~~G~~~~M~~~~~  363 (385)
T KOG3378|consen  292 -----PFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLE---KLDLSECDIYMLGPNNYMRFVKQ  363 (385)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhh---hcChhhCceeeeCcHHHHHHHHH
Confidence                 222222222110   11100000000    00  000112345555555   34567889999999999999999


Q ss_pred             HHHHcCCCccCeeccC
Q 022710          278 IVLAEGVSSEKILKNF  293 (293)
Q Consensus       278 ~L~~~Gv~~~~I~~~~  293 (293)
                      .|.+.|+..+.|+.+|
T Consensus       364 ~L~~L~~~~~~v~~E~  379 (385)
T KOG3378|consen  364 ELVKLGVEPNKVQSEF  379 (385)
T ss_pred             HHHHhcCCccceeccc
Confidence            9999999999999886

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1.1e-19  Score=173.90  Aligned_cols=169  Identities=24%  Similarity=0.471  Sum_probs=136.6

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEeC---------CcchHhhhcCCC-CCEEEEEeecCCCccccCCCCCCCCCeEE
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSVA---------GSTAEVLCGLKK-GDVVEISQVMGRGFAVDRIQPPDEYPTVL  172 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~---------G~~s~~L~~l~~-Gd~v~v~gP~G~~f~l~~~~p~~~~~~iv  172 (293)
                      ..+|+|||+|.+..  .+++++++|..+.         |..|.||+++.+ ||.+.+....++.|.+..    +...+++
T Consensus       371 lkPR~YSIsSs~~~--~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~----~~~~PiI  444 (587)
T COG0369         371 LKPRLYSIASSPGV--SPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPE----DPETPII  444 (587)
T ss_pred             CCCeeeEeccCCCC--CCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCC----CCCCceE
Confidence            57899999999975  2467777765432         677999998666 999999887775586653    3448999


Q ss_pred             EEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCC--cEEEEEEecCCCCCCccccccchHH
Q 022710          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAF  249 (293)
Q Consensus       173 lia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~~g~v~~~~  249 (293)
                      ||+.||||||+++++++...++...++.||||+|+ ..|.+|++|++++..+|  .++...+|+++.    .+-||++.+
T Consensus       445 MIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~----~KiYVQd~l  520 (587)
T COG0369         445 MIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE----EKIYVQDRL  520 (587)
T ss_pred             EEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC----CCccHHHHH
Confidence            99999999999999999988777779999999999 66899999999998876  577778888763    578999988


Q ss_pred             Hhhhc----cCCCCCcEEEEeC-ChHHHHHHHHHHHHc
Q 022710          250 SRAKK----IFNPQGTGVVLCG-QKQMAEEVTSIVLAE  282 (293)
Q Consensus       250 ~~~~~----~~~~~~~~v~vCG-p~~~~~~~~~~L~~~  282 (293)
                      .+...    ..+. ...+|+|| ...|.+++.++|.+.
T Consensus       521 re~~del~~~l~~-ga~~YVCGd~~~Ma~dV~~AL~~i  557 (587)
T COG0369         521 REQADELWEWLEE-GAHIYVCGDAKGMAKDVEEALLDI  557 (587)
T ss_pred             HHhHHHHHHHHHC-CCEEEEeCCCccchHHHHHHHHHH
Confidence            77421    2333 38999999 889999999988753

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.82  E-value=6e-20  Score=140.14  Aligned_cols=104  Identities=28%  Similarity=0.555  Sum_probs=87.5

Q ss_pred             EEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--C-cEEEEEEecCCCCCCccccccchHH
Q 022710          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAF  249 (293)
Q Consensus       173 lia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~-i~~~~~~s~~~~~~~~~~g~v~~~~  249 (293)
                      ||||||||||++|+++++.+.+...+++|+|++|+.++++|+++|++|...  + ++++.+ +..++.|.+..|++++.+
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~~   79 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDLL   79 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHHH
T ss_pred             CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHHH
Confidence            799999999999999999977778999999999999999999999999864  3 555555 666677888899999988


Q ss_pred             Hhhhcc--CCCCCcEEEEeCChHHHHHHHH
Q 022710          250 SRAKKI--FNPQGTGVVLCGQKQMAEEVTS  277 (293)
Q Consensus       250 ~~~~~~--~~~~~~~v~vCGp~~~~~~~~~  277 (293)
                      .+....  .+..+..+|+|||++|++.+++
T Consensus        80 ~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~  109 (109)
T PF00175_consen   80 LEDLLPEKIDPDDTHVYICGPPPMMKAVRK  109 (109)
T ss_dssp             HHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred             HHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence            553222  3567899999999999999864

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=3.8e-18  Score=166.70  Aligned_cols=212  Identities=16%  Similarity=0.234  Sum_probs=153.5

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA  135 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s  135 (293)
                      .+++.++.-++.++.++++..+     ..+.++||||++|.+|..  .++++|||+|+|+    ++.+.++||.. |+.|
T Consensus       356 ~~~i~~~~llp~~vi~L~~~Kp-----~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~----dd~lsvhIk~~-g~wT  425 (646)
T KOG0039|consen  356 NVKIAKVVLLPSDVLELIMSKP-----PGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPE----DDFLSVHIKAL-GDWT  425 (646)
T ss_pred             CceEEEEEEcCCCeEEEEEeCC-----CCCCCCCCCEEEEECccccccccCCceeecCCC----CCEEEEEEEec-CcHH
Confidence            4788999999999999999753     246899999999999965  5799999999994    89999999998 8888


Q ss_pred             Hhhhc-CC------------CCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC--------
Q 022710          136 EVLCG-LK------------KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK--------  194 (293)
Q Consensus       136 ~~L~~-l~------------~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~--------  194 (293)
                      +.|.+ +.            ..-++.+.||||.+- .+    -.+++.++||++|+|+||+.|+++.++.+.        
T Consensus       426 ~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s-~d----~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~  500 (646)
T KOG0039|consen  426 EKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPS-QD----VFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP  500 (646)
T ss_pred             HHHHHHHhhhcccccccccccCceEEEECCCCCCc-hh----hhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc
Confidence            87754 22            145799999999854 12    137889999999999999999999998431        


Q ss_pred             --------CCCcEEEEEccCCcccc-ccHHHHHHHHh---CC-cEEEEEEecCCC-----------------------CC
Q 022710          195 --------ERSDVRLYYGARNLKRM-AYQDKFKEWES---SG-VKIVPVLSQPDG-----------------------NW  238 (293)
Q Consensus       195 --------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~---~~-i~~~~~~s~~~~-----------------------~~  238 (293)
                              ...+++.+|.+|+..+. .|.+.+.+++.   .+ ++++.+.++.-.                       ..
T Consensus       501 ~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~  580 (646)
T KOG0039|consen  501 TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIV  580 (646)
T ss_pred             cccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccc
Confidence                    23568999998877764 67776666653   23 455555543210                       00


Q ss_pred             C-------ccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710          239 S-------GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV  284 (293)
Q Consensus       239 ~-------~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv  284 (293)
                      .       ..+....+.+.+...........|+.|||+.|++++++.+.+..-
T Consensus       581 ~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~  633 (646)
T KOG0039|consen  581 TGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSS  633 (646)
T ss_pred             ccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhccc
Confidence            0       012233344444222222223799999999999999999988644

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=99.78  E-value=4.4e-18  Score=127.76  Aligned_cols=94  Identities=28%  Similarity=0.381  Sum_probs=81.2

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~  134 (293)
                      +++|++++.++++++.++|+.+++.  ....|.||||+.|+++..+  ..|+|||++.+..   ++.++|+||.++ |.+
T Consensus         1 ~~~v~~~~~~s~~~~~~~~~~~~~~--~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~---~~~~~~~ik~~~~G~~   75 (99)
T PF00970_consen    1 KAKVVEIEELSPDVKIFRFKLPDPD--QKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD---KGYLEFAIKRYPNGRV   75 (99)
T ss_dssp             EEEEEEEEEESSSEEEEEEEESSTT--TT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS---SSEEEEEEEECTTSHH
T ss_pred             CEEEEEEEEeCCCeEEEEEEECCCC--cccccCcceEEEEEEccCCcceecceeEeeecCC---CCcEEEEEEeccCCHH
Confidence            5789999999999999999987543  2367899999999999443  4799999999976   789999999986 689


Q ss_pred             hHhhhcCCCCCEEEEEeecCCCc
Q 022710          135 AEVLCGLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       135 s~~L~~l~~Gd~v~v~gP~G~~f  157 (293)
                      |+||+++++||+|.++||+|+ |
T Consensus        76 S~~L~~l~~Gd~v~i~gP~G~-f   97 (99)
T PF00970_consen   76 SRYLHQLKPGDEVEIRGPYGN-F   97 (99)
T ss_dssp             HHHHHTSCTTSEEEEEEEESS-E
T ss_pred             HHHHHhCCCCCEEEEEEcccc-c
Confidence            999999999999999999998 5

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=99.77  E-value=3.1e-18  Score=164.12  Aligned_cols=169  Identities=23%  Similarity=0.509  Sum_probs=127.4

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe---C--------CcchHhhhcCCCCCEEEEEeecCCC-ccccCCCCCCCCCe
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV---A--------GSTAEVLCGLKKGDVVEISQVMGRG-FAVDRIQPPDEYPT  170 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---~--------G~~s~~L~~l~~Gd~v~v~gP~G~~-f~l~~~~p~~~~~~  170 (293)
                      .++|+|||+|++...  ++.+.+++-.+   .        |-.|+||+++++|+.+...+|.+.. |.+    |++...+
T Consensus       420 L~pR~YSIssS~~~~--~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frl----p~dp~~P  493 (645)
T KOG1158|consen  420 LQPRYYSISSSPKVH--PNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRL----PSDPSTP  493 (645)
T ss_pred             ccccccccccCcccC--CCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceec----CCCCCCc
Confidence            579999999988652  45555444321   1        5679999999999999854555552 433    3456789


Q ss_pred             EEEEEeCcchhHHHHHHHHhhccC------CCCcEEEEEccCCcccc-ccHHHHHHHHhCC--cEEEEEEecCCCCCCcc
Q 022710          171 VLIFATGSGISPIRSLIESGFSSK------ERSDVRLYYGARNLKRM-AYQDKFKEWESSG--VKIVPVLSQPDGNWSGE  241 (293)
Q Consensus       171 ivlia~GtGIaP~~sll~~~~~~~------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~  241 (293)
                      ++|||.||||||+++++++.....      ... +.||||+|+.+.. +|++|++++...+  .++...+||.+.   +.
T Consensus       494 iIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~---~~  569 (645)
T KOG1158|consen  494 IIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQT---PK  569 (645)
T ss_pred             EEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCC---CC
Confidence            999999999999999999987432      123 8999999999965 9999999997764  467788898764   35


Q ss_pred             ccccchHHHhhh----ccCCCCCcEEEEeCChH-HHHHHHHHHHH
Q 022710          242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQ-MAEEVTSIVLA  281 (293)
Q Consensus       242 ~g~v~~~~~~~~----~~~~~~~~~v~vCGp~~-~~~~~~~~L~~  281 (293)
                      +-|+++.+.+..    ......+..+|+||... |.+++.++|..
T Consensus       570 k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~  614 (645)
T KOG1158|consen  570 KIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVR  614 (645)
T ss_pred             ceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHH
Confidence            668888766532    12334589999999998 99999998865

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.74  E-value=9.6e-17  Score=159.79  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=103.6

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-----CceeeEEecCCCCCCCCCCeEEEEEEEeCC
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLVKSVAG  132 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-----~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G  132 (293)
                      .++|++++.++++++.++|+.+.    ....++||||++|+.++.     ..++++||++.+..   .+.++|+++.+ |
T Consensus       792 ~~~Vv~~~~lap~i~~L~l~aP~----iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e---~g~It~i~rvV-G  863 (1028)
T PRK06567        792 TSRVNKINILDDKTFELIIHSPL----AAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE---KGLISFIVFEV-G  863 (1028)
T ss_pred             ceEEEEEEEecCCEEEEEEeCcc----hhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC---CCEEEEEEEEE-C
Confidence            58999999999999999997543    223679999999998642     25578999998765   78999999999 9


Q ss_pred             cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEE
Q 022710          133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY  203 (293)
Q Consensus       133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~  203 (293)
                      ..|+.|+++++||.+.+.||+|++|.+.      ..+++++||||+|++|   +++++.+  ...+|..+.
T Consensus       864 kgT~~Ls~l~~Gd~v~v~GPLG~pF~i~------~~k~vLLVgGGVGiAp---Lak~Lk~--~G~~V~~~~  923 (1028)
T PRK06567        864 KSTSLCKTLSENEKVVLMGPTGSPLEIP------QNKKIVIVDFEVGNIG---LLKVLKE--NNNEVIFVT  923 (1028)
T ss_pred             hHHHHHhcCCCCCEEEEEcccCCCCCCC------CCCeEEEEEccccHHH---HHHHHHH--CCCeEEEEE
Confidence            9999999999999999999999999764      2468999999999997   5566543  234555554

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=99.66  E-value=2.3e-14  Score=123.67  Aligned_cols=214  Identities=9%  Similarity=0.140  Sum_probs=154.8

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----------------------ceeeEEec
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----------------------KPTFLAIA  111 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----------------------~~r~ySi~  111 (293)
                      ...+.++|+.++++++++.+++|..++...+ ......+||+.|.+|...                      ..|.|||.
T Consensus        15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f-~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR   93 (265)
T COG2375          15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGF-ASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIR   93 (265)
T ss_pred             ccceEEEEEEEEecCCCeEEEEEeccccccc-ccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceee
Confidence            3577899999999999999999997655433 112344559999998431                      15779998


Q ss_pred             CCCCCCCCCCeEEE--EEEEeCCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710          112 SPPSFASASGAFEF--LVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (293)
Q Consensus       112 s~p~~~~~~~~~~~--~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~  189 (293)
                      ..+..   .+++.+  ++....|+.|.|..++++||+|.+.||.|..+ .+     ..+..++|++.-+++..|..+|++
T Consensus        94 ~~d~~---~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~-p~-----~~~~~~lLigDetAlPAIa~iLE~  164 (265)
T COG2375          94 AVDAA---AGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLV-PP-----EAADWYLLIGDETALPAIARILET  164 (265)
T ss_pred             eeccc---ccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCC-CC-----CCcceEEEeccccchHHHHHHHHh
Confidence            66544   566555  44433479999999999999999999999833 22     378899999999999999999999


Q ss_pred             hhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCCh
Q 022710          190 GFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQK  269 (293)
Q Consensus       190 ~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~  269 (293)
                      +   +.....+.+..+.+..+..   ++..  ..++++.++......    ....+.++..+  .....++..+|+.|..
T Consensus       165 l---p~~~~~~a~lev~d~ad~~---~l~~--~~~l~~~Wl~r~~~~----~~~ll~~a~~~--~~~P~~~~~vwiagE~  230 (265)
T COG2375         165 L---PADTPAEAFLEVDDAADRD---ELPS--PDDLELEWLARDDAP----TEQLLAAALAQ--AALPAGDYYVWIAGEA  230 (265)
T ss_pred             C---CCCCceEEEEEeCChHHhh---ccCC--CCceeEEEecCCCcc----chHHHHHHHhc--ccCCCCceEEEEeccH
Confidence            8   4455668888888887752   2211  126777777443321    11223333333  1222345899999999


Q ss_pred             HHHHHHHHHHHHc-CCCccCeec
Q 022710          270 QMAEEVTSIVLAE-GVSSEKILK  291 (293)
Q Consensus       270 ~~~~~~~~~L~~~-Gv~~~~I~~  291 (293)
                      ++++.+++.|++. |+++++|+.
T Consensus       231 ~~v~~~Rk~L~~e~g~dk~~i~a  253 (265)
T COG2375         231 SAVKAIRKFLRNERGFDKSRVRA  253 (265)
T ss_pred             HHHHHHHHHHhhhcCCCHHHhhh
Confidence            9999999999875 999998864

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=99.60  E-value=5.9e-15  Score=134.64  Aligned_cols=162  Identities=24%  Similarity=0.451  Sum_probs=122.4

Q ss_pred             ceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEE
Q 022710          104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI  173 (293)
Q Consensus       104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivl  173 (293)
                      ++|.|||+|.+.    .-.++++|-.+          .|.-|+||++|++|++|.+.---|. +.++.    +-..+++|
T Consensus       367 rPR~fSIas~~~----~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~-l~~p~----~~~~PlIm  437 (574)
T KOG1159|consen  367 RPRAFSIASSPG----AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGT-LYFPS----DLNKPLIM  437 (574)
T ss_pred             ccceeeeccCCC----CCceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCc-cccCC----CCCCCeEE
Confidence            589999999998    44588766443          1788999999999999988776675 55542    24679999


Q ss_pred             EEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhh
Q 022710          174 FATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRA  252 (293)
Q Consensus       174 ia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~  252 (293)
                      |+-||||||+++++.+..-.. .....||||+|+.+ |.+|.++..+...  ...+..+|++++    .+-|+++.+.+.
T Consensus       438 VGPGTGvAPfRa~i~er~~q~-~~~~~lFfGCR~K~~Df~y~~eW~~~~~--~~~~~AFSRDqe----~kvYVQh~i~e~  510 (574)
T KOG1159|consen  438 VGPGTGVAPFRALIQERIYQG-DKENVLFFGCRNKDKDFLYEDEWTELNK--RAFHTAFSRDQE----QKVYVQHKIREN  510 (574)
T ss_pred             EcCCCCcccHHHHHHHHHhhc-cCCceEEEecccCCccccccchhhhhhc--chhhhhcccccc----cceeHHHHHHHh
Confidence            999999999999999986422 34447899999998 6888877766653  445557788765    356888877663


Q ss_pred             h----ccCCCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710          253 K----KIFNPQGTGVVLCGQK-QMAEEVTSIVLA  281 (293)
Q Consensus       253 ~----~~~~~~~~~v~vCGp~-~~~~~~~~~L~~  281 (293)
                      .    ......+..||+||+. .|-.++.++|.+
T Consensus       511 g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~e  544 (574)
T KOG1159|consen  511 GEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIE  544 (574)
T ss_pred             hHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHH
Confidence            2    1234578899999997 787888887765

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.50  E-value=9.1e-14  Score=112.82  Aligned_cols=112  Identities=20%  Similarity=0.360  Sum_probs=73.4

Q ss_pred             CCeEEEEEeCcchhHHHHHHHHhhccC-----CCCcEEEEEccCCcccc-ccHHHHHHHHh---C-CcEEEEEEecCCCC
Q 022710          168 YPTVLIFATGSGISPIRSLIESGFSSK-----ERSDVRLYYGARNLKRM-AYQDKFKEWES---S-GVKIVPVLSQPDGN  237 (293)
Q Consensus       168 ~~~ivlia~GtGIaP~~sll~~~~~~~-----~~~~v~l~~~~r~~~~~-~~~~~l~~l~~---~-~i~~~~~~s~~~~~  237 (293)
                      |+++||||||+||||++++++++....     ...+|+|+|.+|+.+++ +|.+.|.++..   . ++++++++++..+.
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~   80 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA   80 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence            568999999999999999999997432     35889999999999987 67755554433   3 78888888775432


Q ss_pred             CC-------------------------------ccccc--cchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH
Q 022710          238 WS-------------------------------GETGY--VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV  279 (293)
Q Consensus       238 ~~-------------------------------~~~g~--v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L  279 (293)
                      ..                               ...|+  +.+.+.+...........|++|||++|++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v  155 (156)
T PF08030_consen   81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV  155 (156)
T ss_dssp             ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred             ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence            10                               00111  22333332123445779999999999999999875

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.13  E-value=5.2e-12  Score=95.73  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=6.3

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEEeCCc
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSVAGS  133 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~  133 (293)
                      ..++++++.+.++++++++..+..    .+.|+||||++|+++...    ++++|||++.+.    ++.++|+||.. |.
T Consensus         3 ~~~~~~v~~~~~~~v~i~i~~~~~----~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~----~~~i~l~ik~~-g~   73 (105)
T PF08022_consen    3 NVRIASVELLPDDVVEITIPKPSS----PFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE----DNSITLIIKAR-GG   73 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEEEcCCCEEEEEEECCCC----CCCCCCceEEEEEEcCcCcCcccccccEeeccCC----CCEEEEEEEeC-CC
Confidence            356778888889999999875432    157899999999999654    789999999997    78999999998 77


Q ss_pred             chHhhhcC--------CCCCEEEEEeecCC
Q 022710          134 TAEVLCGL--------KKGDVVEISQVMGR  155 (293)
Q Consensus       134 ~s~~L~~l--------~~Gd~v~v~gP~G~  155 (293)
                      +|+.|.+.        ..+-++.|+||||.
T Consensus        74 ~T~~L~~~~~~~~~~~~~~~~v~idGPYG~  103 (105)
T PF08022_consen   74 WTKRLYEHLSESPSKQGNRLRVFIDGPYGA  103 (105)
T ss_dssp             -----------------------TTSTTSH
T ss_pred             chHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence            77777642        23446788999995

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=98.89  E-value=7.2e-09  Score=79.94  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC-----------------------ceeeEEecCCCCC
Q 022710           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-----------------------KPTFLAIASPPSF  116 (293)
Q Consensus        60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~-----------------------~~r~ySi~s~p~~  116 (293)
                      +|++++.+++++++++|..++-.++  ....+||||.|.+|..+                       ..|.||+.+.+..
T Consensus         1 ~V~~~~~ltP~~~Rv~l~g~~l~~~--~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~   78 (117)
T PF08021_consen    1 TVVRVERLTPHMRRVTLGGEDLAGF--PSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPE   78 (117)
T ss_dssp             EEEEEEEEETTEEEEEEESGGGTT----S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT
T ss_pred             CEEEEEECCCCEEEEEEECCCcccC--ccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCC
Confidence            5899999999999999996544333  23489999999998541                       3577999887654


Q ss_pred             CCCCCeEEEEEEEeC--CcchHhhhcCCCCCEEEEEeecCC
Q 022710          117 ASASGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGR  155 (293)
Q Consensus       117 ~~~~~~~~~~Vk~~~--G~~s~~L~~l~~Gd~v~v~gP~G~  155 (293)
                         .++++|-+-.+.  |+.+.|..++++||+|.|.||.|.
T Consensus        79 ---~~~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~  116 (117)
T PF08021_consen   79 ---TGELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGS  116 (117)
T ss_dssp             -----EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE--
T ss_pred             ---CCEEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCC
Confidence               788888666664  689999999999999999999987

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins

Probab=98.24  E-value=9.9e-06  Score=62.67  Aligned_cols=110  Identities=10%  Similarity=0.139  Sum_probs=71.1

Q ss_pred             CeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchH
Q 022710          169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA  248 (293)
Q Consensus       169 ~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~  248 (293)
                      +.++|++.-|++..+.++++++   +...+++++..+.+.++......     ..+++++++.....   ......+.+.
T Consensus         2 ~~~ll~gDeTalPAi~~iLe~l---p~~~~~~v~iev~~~~d~~~l~~-----~~~~~v~wv~r~~~---~~~~~~l~~a   70 (119)
T PF04954_consen    2 DRYLLVGDETALPAIARILEAL---PADAPGTVFIEVPDEADRQPLPA-----PAGVEVTWVPRDGP---AAQGSALADA   70 (119)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHS----TT-EEEEEEEESSGGG------------TEEEEEEEE-SS-----TT-HHHHHH
T ss_pred             ceEEEEeccccHHHHHHHHHhC---CCCCeEEEEEEECChHhcccCCC-----CCCCEEEEEeCCCC---CchHHHHHHH
Confidence            5789999999999999999998   56688899999988887543322     33778877755543   1112233343


Q ss_pred             HHhhhccCCCCCcEEEEeCChHHHHHHHHHHH-HcCCCccCeec
Q 022710          249 FSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL-AEGVSSEKILK  291 (293)
Q Consensus       249 ~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~-~~Gv~~~~I~~  291 (293)
                      +..  ......+..+|++|..++++.+++.|+ +.|+++++|++
T Consensus        71 l~~--~~~~~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~~~~~~  112 (119)
T PF04954_consen   71 LRD--LPLPAGDGYVWVAGEASAVRALRRHLREERGLPRDRIYA  112 (119)
T ss_dssp             HTT--S---SS-EEEEEEEEHHHHHHHHHHHHHH----GGGEEE
T ss_pred             HHH--hhccCCCeEEEEEecHHHHHHHHHHHHHhhCCCHHHeEE
Confidence            333  122356899999999999999999998 66999999875

; PDB: 2GPJ_A.

>PLN02631 ferric-chelate reductase

Probab=85.30  E-value=1.3  Score=44.39  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             ccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       242 ~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      +..+.+.+.+.   ....+.+|++|||++|-+++.+.|+...  .++.|+
T Consensus       648 rp~~~~i~~~~---~~~~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~f  692 (699)
T PLN02631        648 KPNLKKILLEA---EGSEDVGVMVCGPRKMRHEVAKICSSGL--AKNLHF  692 (699)
T ss_pred             CCCHHHHHHhc---cCCCceeEEEECcHHHHHHHHHHHhcCC--CcceeE
Confidence            34455655542   2235899999999999999999998754  445544

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=85.04  E-value=1.3  Score=44.65  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             cccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710          243 GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV  284 (293)
Q Consensus       243 g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv  284 (293)
                      ...++.+.+..+.....+.+|++|||++|.+.+.+.|+..+.
T Consensus       658 p~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~  699 (722)
T PLN02844        658 PNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQ  699 (722)
T ss_pred             CCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhccc
Confidence            345555544333344678999999999999999999988755

>PLN02292 ferric-chelate reductase

Probab=84.15  E-value=1.6  Score=43.95  Aligned_cols=45  Identities=22%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             cccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          241 ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       241 ~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      .+..+.+.+.+    ....+.+|++|||++|-+++.+.|+...  .++.|+
T Consensus       651 ~rp~~~~i~~~----~~~~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~~  695 (702)
T PLN02292        651 ERPNLNKLLVG----LKGSSVGVLVCGPKKMRQKVAKICSSGL--AENLHF  695 (702)
T ss_pred             CCCCHHHHHHh----cCCCceeEEEECcHHHHHHHHHHHhcCC--CcceeE
Confidence            34456666644    2356899999999999999999998755  444544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
1gaq_A	314	Crystal Structure Of The Complex Between Ferredoxin		1e-09
3vo1_A	314	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		3e-09
3vo2_A	310	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		6e-09
1qfj_A	232	Crystal Structure Of Nad(p)h:flavin Oxidoreductase		5e-07
2b5o_A	402	Ferredoxin-nadp Reductase Length = 402		5e-06
1fnb_A	314	Refined Crystal Structure Of Spinach Ferredoxin Red		3e-05
1tvc_A	250	Fad And Nadh Binding Domain Of Methane Monooxygenas		4e-05
2r6h_A	290	Crystal Structure Of The Domain Comprising The Nad		5e-05
1sm4_A	296	Crystal Structure Analysis Of The Ferredoxin-Nadp+		6e-05
1qfy_A	308	Pea Fnr Y308s Mutant In Complex With Nadp+ Length =		6e-05
3mhp_A	296	Fnr-Recruitment To The Thylakoid Length = 296		6e-05
1qg0_A	308	Wild-type Pea Fnr Length = 308		6e-05
1qga_A	308	Pea Fnr Y308w Mutant In Complex With Nadp+ Length =		6e-05
4af6_A	308	Pea Fnr L268v Mutant Length = 308		6e-05
1bx0_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		8e-05
1frn_A	314	The Involvement Of Ser96 In The Catalytic Mechanism		9e-05
1frq_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		9e-05
1bx1_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		9e-05
2qdx_A	257	P.Aeruginosa Fpr With Fad Length = 257		1e-04
2xnc_A	315	Crystal Structure Of An Engineered Ferredoxin Nadp		2e-04
4af7_A	308	Pea Fnr C266m Mutant Length = 308		3e-04
2eix_A	243	The Structure Of Physarum Polycephalum Cytochrome B		5e-04
2rc5_A	314	Refined Structure Of Fnr From Leptospira Interrogan		7e-04
1fdr_A	248	Flavodoxin Reductase From E. Coli Length = 248		8e-04

>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 18/165 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC L+ GD V+I+  +G+    + + P D   T+++ ATG+GI+P RS +  
Sbjct: 128 VKGVCSNFLCDLQPGDNVQITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 183
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
            F  K   D +      L+ G      + Y+++F   KE      ++   +S+   N +G
Sbjct: 184 MFFEK-HDDYKFNGLGWLFLGVPTSSSLLYKEEFGKMKERAPENFRVDYAVSREQTNAAG 242
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
           E  Y+Q   +  K    ++     T V +CG K M + +  I+++
Sbjct: 243 ERMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIMVS 287

>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   T+++ ATG+GI+P RS +  
Sbjct: 128 VKGVCSNFLCDLKPGAEVKITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 183
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQ---DKFKEWESSGVKIVPVLSQPDGNWSG 240
            F  +E  D +      L+ G      + Y+   +K KE      ++   +S+   N +G
Sbjct: 184 MF-FEEHEDYKYTGLAWLFLGVPTSDTLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAG 242
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL 280
           E  Y+Q   +  K    ++     T V +CG K M + +  I+L
Sbjct: 243 EKMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIML 286

>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++ ATG+GI+P RS +  
Sbjct: 124 VKGVCSNFLCDLKPGADVKITGPVGK----EMLMPKDPNATVIMLATGTGIAPFRSFLWK 179
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQ---DKFKEWESSGVKIVPVLSQPDGNWSG 240
            F  +E  D +      L+ G      + Y+   +K KE      ++   +S+   N +G
Sbjct: 180 MF-LEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAG 238
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL 280
           E  Y+Q   +  +    ++     T V +CG K M + +  I+L
Sbjct: 239 EKMYIQTRMAEYREELWELLKKDNTYVYMCGLKGMEKGIDDIML 282

>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From Escherichia Coli Length = 232

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 162 IQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK--E 219
           ++  +E P +LI A G+G S  RS++ +  +     D+ +Y+G R  + +    + +   
Sbjct: 97  LRDDEERPMILI-AGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALS 155
Query: 220 WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT----GVVLCGQKQMAEEV 275
            +  G+++VPV+ QP+  W G TG V  A      +    GT     + + G+ +MA+  
Sbjct: 156 LKHPGLQVVPVVEQPEAGWRGRTGTVLTA------VLQDHGTLAEHDIYIAGRFEMAKIA 209
Query: 276 TSIVLAEGVSSEKIL 290
             +  +E  + E  L
Sbjct: 210 RDLFCSERNAREDRL 224

>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 128 KSVAGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSL 186
           ++V G  +  LC L  G D V+I+  +G+    + + P DE  TV++ ATG+GI+P R+ 
Sbjct: 213 ETVYGVCSTYLCNLPVGTDDVKITGPVGK----EMLLPDDEDATVVMLATGTGIAPFRAF 268
Query: 187 IESGFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
           +   F       K +    L +G      + Y+D F++  +      ++   +S+     
Sbjct: 269 LWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTA 328
Query: 239 SGETGYVQAAFSR-AKKIF---NPQGTGVVLCGQKQMAEEVTSIVLAE 282
            G   YVQ+  S  A ++F       T V +CG K M   +     AE
Sbjct: 329 DGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGMQPPIDETFTAE 376

>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           +++ G  +  LC LK G  V+++  +G+    + + P D   T+++  TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL----AEGVS 285
            GE  Y+Q   ++      ++     T V +CG K M + +  I++    AEG+ 
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGID 295

>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase Reductase From Methylococcus Capsulatus (Bath) Length = 250

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 175 ATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLS 232
           A G+G++P+ S++         ++ R+Y+G      + Y D+ K  E S   + +   + 
Sbjct: 124 AGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKACVW 183
Query: 233 QPDGNWSGETGYVQAAFSR--AKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
            P G+W GE G    A          NP    + LCG   M +    +V + G+  E++ 
Sbjct: 184 HPSGDWEGEQGSPIDALREDLESSDANPD---IYLCGPPGMIDAACELVRSRGIPGEQVF 240

>pdb|2R6H|A Chain A, Crystal Structure Of The Domain Comprising The Nad Binding And The Fad Binding Regions Of The Nadh:ubiquinone Oxidoreductase, Na Translocating, F Subunit From Porphyromonas Gingivalis Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 13/166 (7%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G ++  +  LK GD V  S   G       IQ  D     L    G+G +P+R+ I   F
Sbjct: 126 GISSSYIFSLKPGDKVXXSGPYGDF----HIQDTD--AEXLYIGGGAGXAPLRAQILHLF 179
Query: 192 SS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLS--QPDGNWSGETGYV- 245
            + K    V  +YGAR+   + Y++ F+E E      K    LS  QP+ NW+G  G++ 
Sbjct: 180 RTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIH 239
Query: 246 QAAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290
           Q  +    K  + P+      CG    A  V   +   GV    + 
Sbjct: 240 QVIYDNYLKDHDAPEDIEYYXCGPGPXANAVKGXLENLGVPRNXLF 285

>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           + V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +
Sbjct: 108 EEVKGVCSNFLCDLKPGADVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFL 163
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 164 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNE 222
Query: 239 SGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAEEVTSIV 279
            GE  Y+Q   ++  +    +     T V +CG K M + +  I+
Sbjct: 223 KGEKMYIQTRMAQYAEELWTLLKKDNTFVYMCGLKGMEQGIDDIM 267

>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGE 241
            F  K           L+ G      + Y+++F++ +       ++   +S+   N  GE
Sbjct: 178 MFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGE 237
Query: 242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
             Y+Q   ++      ++     T V +CG K M + +  I+++
Sbjct: 238 KMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 281

>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 109 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 164
Query: 190 GFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGE 241
            F  K           L+ G      + Y+++F++ +       ++   +S+   N  GE
Sbjct: 165 MFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGE 224
Query: 242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
             Y+Q   ++      ++     T V +CG K M + +  I+++
Sbjct: 225 KMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 268

>pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGE 241
            F  K           L+ G      + Y+++F++ +       ++   +S+   N  GE
Sbjct: 178 MFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGE 237
Query: 242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
             Y+Q   ++      ++     T V +CG K M + +  I+++
Sbjct: 238 KMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 281

>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGE 241
            F  K           L+ G      + Y+++F++ +       ++   +S+   N  GE
Sbjct: 178 MFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGE 237
Query: 242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
             Y+Q   ++      ++     T V +CG K M + +  I+++
Sbjct: 238 KMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 281

>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGE 241
            F  K           L+ G      + Y+++F++ +       ++   +S+   N  GE
Sbjct: 178 MFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGE 237
Query: 242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
             Y+Q   ++      ++     T V +CG K M + +  I+++
Sbjct: 238 KMYIQTRMAQYAEELWELLKKDNTFVYMCGVKGMEKGIDDIMVS 281

>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           +++ G  +  LC LK G  V+++  +G+    + + P D   T+++  TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL----AEGVS 285
            GE  Y+Q   ++      ++     T   +CG K M + +  I++    AEG+ 
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGID 295

>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           +++ G  +  LC LK G  V+++  +G+    + + P D   T+++  TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL----AEGVS 285
            GE  Y+Q   ++      ++     T   +CG K M + +  I++    AEG+ 
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGID 295

>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           +++ G  +  LC LK G  V+++  +G+    + + P D   T+++  TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL----AEGVS 285
            GE  Y+Q   ++      ++     T   +CG K M + +  I++    AEG+ 
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGID 295

>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 22/175 (12%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           +++ G  +  LC LK G  V+++  +G+    + + P D   T+++  TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVL----AEGVS 285
            GE  Y+Q   ++      ++     T   +CG K M + +  I++    AEG+ 
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGID 295

>pdb|2QDX|A Chain A, P.Aeruginosa Fpr With Fad Length = 257

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 25/178 (14%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
           F +K   G     L  LK+GD + +S+        D + P      + + +TG+G++P  
Sbjct: 66  FSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKH---LYLLSTGTGMAPFL 122
Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQD----KFKEWESSGVKI------VPVLSQP 234
           S+I+   + +    V L +G R +  +AY D       E E  G ++       P++++ 
Sbjct: 123 SVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTRE 182
Query: 235 DGNWSGETGYVQAAFSRAKKIF--------NPQGTGVVLCGQKQMAEEVTSIVLAEGV 284
                G     Q    R+ K+F        NPQ    ++CG   M EE ++++ + G+
Sbjct: 183 PFRNQGR----QTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGL 236

>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +   F
Sbjct: 130 GVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWKMF 185
Query: 192 SSKERSD-----VRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETG 243
             K           L+ G      + Y+++F++ +       ++   +S+   N  GE  
Sbjct: 186 FEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKM 245
Query: 244 YVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
           Y+Q   ++      ++     T V +CG K M + +  I+++
Sbjct: 246 YIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVS 287

>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 178 MFFEKHED 185

>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5 Reductase Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPI----RSLI 187
           G  ++ +  L  GD +++     RG        P+    + + A G+GI+P+    R++I
Sbjct: 85  GQMSQYIDHLNPGDFLQV-----RGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAII 139
Query: 188 ESGFSSKERSDVRLYYGARN----LKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETG 243
           ++    KE++ + L +   N    L R    D  K++  S  K+  VL+ P   W+G  G
Sbjct: 140 KN---PKEKTIINLIFANVNEDDILLRTELDDMAKKY--SNFKVYYVLNNPPAGWTGGVG 194
Query: 244 YVQAAFSRAKKIFNPQGTG--VVLCGQKQMAEEVTSIVLAEGVSSEK 288
           +V A     K+ F+P  +   V++CG   M + +   +   G + E+
Sbjct: 195 FVSA--DMIKQHFSPPSSDIKVMMCGPPMMNKAMQGHLETLGYTPEQ 239

>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 21/172 (12%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIESG 190
           G  +  +C LK GD V ++   G+ F +    P  ++   ++F ATG+GI+P   + E  
Sbjct: 132 GVCSNYMCDLKPGDEVTMTGPSGKKFLL----PNTDFSGDIMFLATGTGIAPFIGMSEEL 187
Query: 191 FSSKE---RSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGN-WSGETGY 244
              K      ++ L YGA     +   D  K  ES     K++  +S+ + N + G   Y
Sbjct: 188 LEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMY 247
Query: 245 ----VQAAFSRAKKIFNPQGTGVVLCG-----QKQMAEEVTSIVLAEGVSSE 287
               V+      KKI N  G    +CG     +K + EE+  I    G   E
Sbjct: 248 ISHRVREQAEAVKKILNGGGR-FYICGGPKGMEKGVIEEIQKISGNTGTYEE 298

>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli Length = 248

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
           +LV    G  +  L  LK GD V++       F +D + P  E  T+ + ATG+ I P  
Sbjct: 66  YLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEV-PHCE--TLWMLATGTAIGPYL 122
Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE---SSGVKIVPVLSQPD--GNWS 239
           S++  G       ++ L + AR    ++Y    +E E      ++I  V+S+    G+ +
Sbjct: 123 SILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLT 182
Query: 240 G------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV 279
           G      E+G +++         N + + V+LCG  QM  +   ++
Sbjct: 183 GRIPALIESGELESTIGLP---MNKETSHVMLCGNPQMVRDTQQLL 225

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	9e-36
1tvc_A	250	Methane monooxygenase component C, methane monooxy	2e-33
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	4e-30
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	2e-27
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	2e-24
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	2e-23
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	4e-22
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	1e-21
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	2e-21
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	3e-19
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	1e-17
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	7e-16
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	4e-14
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	4e-14
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	2e-11
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	4e-11
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	1e-10
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	1e-10
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	3e-10
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	1e-09
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	2e-08
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	7e-08
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	1e-05
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	6e-04

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score =  127 bits (321), Expect = 9e-36
 Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 22/241 (9%)

Query: 54  TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASP 113
           T  +   +  +    ++++ V I    A        RAGQYL + + +  K  F ++AS 
Sbjct: 1   TTLSCK-VTSVEAITDTVYRVRIVPDAAFSF-----RAGQYLMVVMDERDKRPF-SMAST 53

Query: 114 PSFASASGAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV 171
           P      G  E  + +   +     V+  + K   + +    G  +    ++  +E P +
Sbjct: 54  PD---EKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAW----LRDDEERPMI 106

Query: 172 LIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVP 229
           LI A G+G S  RS++ +  +     D+ +Y+G R  + +    + +       G+++VP
Sbjct: 107 LI-AGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVP 165

Query: 230 VLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAE-GVSSEK 288
           V+ QP+  W G TG V  A    +         + + G+ +MA+    +  +E     ++
Sbjct: 166 VVEQPEAGWRGRTGTVLTAV--LQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDR 223

Query: 289 I 289
           +
Sbjct: 224 L 224

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score =  121 bits (306), Expect = 2e-33
 Identities = 42/205 (20%), Positives = 82/205 (40%), Gaps = 15/205 (7%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG---STAEVLCGLKKGDV 146
             GQ++ L +         + A+ P+     G  EFL++ +     S   +    + G V
Sbjct: 45  EPGQFMDLTIPGTDVSRSYSPANLPN---PEGRLEFLIRVLPEGRFSDY-LRNDARVGQV 100

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           + +   +G        +     P   + A G+G++P+ S++         ++ R+Y+G  
Sbjct: 101 LSVKGPLGVFGL----KERGMAPRYFV-AGGTGLAPVVSMVRQMQEWTAPNETRIYFGVN 155

Query: 207 NLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
               + Y D+ K  E S   + +   +  P G+W GE G    A  R     +     + 
Sbjct: 156 TEPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDAL-REDLESSDANPDIY 214

Query: 265 LCGQKQMAEEVTSIVLAEGVSSEKI 289
           LCG   M +    +V + G+  E++
Sbjct: 215 LCGPPGMIDAACELVRSRGIPGEQV 239

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score =  115 bits (289), Expect = 4e-30
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 19/233 (8%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           LA +   ++S     I + D          AGQY+ + +    +    + +S P     +
Sbjct: 113 LARVENLSDSTITFDIQLDDGQPDIHFL--AGQYVNVTLPGTTETRSYSFSSQPG----N 166

Query: 121 GAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178
               F+V++V     +  +    K GD +  +   G  +         + P +++ A G+
Sbjct: 167 RLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYL-----RDVKRPVLML-AGGT 220

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDG 236
           GI+P  S+++          VRL +G      +   ++    +      +   V++  + 
Sbjct: 221 GIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAES 280

Query: 237 NWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
                 GYV           N     V LCG   M E V S +  +G+     
Sbjct: 281 -QHERKGYVTGHIEYD--WLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANF 330

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score =  105 bits (264), Expect = 2e-27
 Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 30/248 (12%)

Query: 56  WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLA--IASP 113
           W    + ++    ++LF +++     P        AGQ+ +L +   G+    A    + 
Sbjct: 4   WVTGKVTKVQNWTDALFSLTVHAPVLP------FTAGQFTKLGLEIDGERVQRAYSYVNS 57

Query: 114 PSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           P     +   EF + +V     S    L  LK GD V++       F +D +   +    
Sbjct: 58  PD----NPDLEFYLVTVPDGKLSPR--LAALKPGDEVQVVSEAAGFFVLDEVPHCETL-- 109

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES---SGVKI 227
             + ATG+ I P  S++  G       ++ L + AR    ++Y    +E E      ++I
Sbjct: 110 -WMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRI 168

Query: 228 VPVLSQPDGNWSGETGYVQAA------FSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLA 281
             V+S+        TG + A        S      N + + V+LCG  QM  +   ++  
Sbjct: 169 QTVVSRET-AAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKE 227

Query: 282 EGVSSEKI 289
               ++ +
Sbjct: 228 TRQMTKHL 235

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 98.3 bits (245), Expect = 2e-24
 Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 37/255 (14%)

Query: 56  WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLA--IASP 113
                +  +    ++LF      +          + GQ++ + +   G+P   A  IASP
Sbjct: 3   LYTERVLSVHHWNDTLFSFKTTRNPGLRF-----KTGQFVMIGLEVDGRPLMRAYSIASP 57

Query: 114 PSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
                     EF    V     ++   L  LK+GD + +S+        D + P      
Sbjct: 58  NY----EEHLEFFSIKVPDGPLTSR--LQHLKEGDELMVSRKPTGTLVHDDLLPGKHL-- 109

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK----------FKEW 220
             + +TG+G++P  S+I+   + +    V L +G R +  +AY D           F + 
Sbjct: 110 -YLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQ 168

Query: 221 ESSGVKIVPVLSQPDGNWSG------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEE 274
               +   P++++      G       +G +           NPQ    ++CG   M EE
Sbjct: 169 VKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDI--GLPPMNPQDDRAMICGSPSMLEE 226

Query: 275 VTSIVLAEGVSSEKI 289
            ++++ + G+     
Sbjct: 227 TSAVLDSFGLKISPR 241

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 95.7 bits (238), Expect = 2e-23
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 38/263 (14%)

Query: 45  AAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-G 103
               +     +     +  +    ++LF   +             R+G+++ + ++D  G
Sbjct: 5   ETTPIAPAKVLPDAQTVTSVRHWTDTLFSFRVTRPQTLRF-----RSGEFVMIGLLDDNG 59

Query: 104 KPTFLA--IASPPSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGRGFA 158
           KP   A  IASP          EF    V     ++   L  +K G+ + +         
Sbjct: 60  KPIMRAYSIASPAW----DEELEFYSIKVPDGPLTSR--LQHIKVGEQIILRPKPVGTLV 113

Query: 159 VDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD--- 215
           +D + P      +   ATG+GI+P  SL+    + ++  +V + +  R +  + Y     
Sbjct: 114 IDALLPGK---RLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVAELEYGRQLV 170

Query: 216 -------KFKEWESSGVKIVPVLSQPDGNWSG------ETGYVQAAFSRAKKIFNPQGTG 262
                     E     +K  P  ++ + +  G       +G V      A    NP+   
Sbjct: 171 EALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAP--MNPETDR 228

Query: 263 VVLCGQKQMAEEVTSIVLAEGVS 285
            ++CG      +V  ++ + G+ 
Sbjct: 229 AMVCGSLAFNVDVMKVLESYGLR 251

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 16/207 (7%)

Query: 92  GQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGSTA-EVLCGLKKGDVVE 148
           GQ++ ++    GK  +      S        G F+ ++K        + +  L  GD ++
Sbjct: 45  GQHMSVKATVDGKEIYRPYTPVSSDD---EKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQ 101

Query: 149 ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARN 207
           +    G+ F       P+    + + A G+GI+P+  +  +   + + ++ + L +   N
Sbjct: 102 VRGPKGQ-FDYK----PNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVN 156

Query: 208 LKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVV 264
              +  + +  +     S  K+  VL+ P   W+G  G+V A   + +    P     V+
Sbjct: 157 EDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIK-QHFSPPSSDIKVM 215

Query: 265 LCGQKQMAEEVTSIVLAEGVSSEKILK 291
           +CG   M + +   +   G + E+   
Sbjct: 216 MCGPPMMNKAMQGHLETLGYTPEQWFI 242

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 91.0 bits (226), Expect = 1e-21
 Identities = 54/270 (20%), Positives = 95/270 (35%), Gaps = 37/270 (13%)

Query: 41  LATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV 100
           L     A V +  + +    +  +    ++LF  +     A          G++  + + 
Sbjct: 4   LWGPLYAPVSESMSKFDTATVLSVHHWTDTLFSFTCTRDQALRF-----NNGEFTMVGLE 58

Query: 101 DVGKPTFLA--IASPPSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGR 155
             GKP   A  I SP          EF    V     ++   L  LK GD V I +    
Sbjct: 59  VDGKPLTRAYSIVSPNY----EEHLEFFSIKVQNGPLTSR--LQHLKVGDPVLIGKKPT- 111

Query: 156 GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215
           G  V     P +  T+ + +TG+G++P  S+I      +    V L +  R    +AY D
Sbjct: 112 GTLVADNLLPGK--TLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMD 169

Query: 216 KFKEWESS----------GVKIVPVLSQPDGNWSG------ETGYVQAAFSRAKKIFNPQ 259
             K                +   P +++ +    G       +G +          F+P+
Sbjct: 170 YIKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLD--MPPFSPE 227

Query: 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
              V+LCG   M ++ T ++   G+   K 
Sbjct: 228 QDRVMLCGSTAMLKDTTELLKKAGLVEGKN 257

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 90.4 bits (224), Expect = 2e-21
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 13/165 (7%)

Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G ++  +  LK GD V +S   G     D          +L    G+G++P+R+ I   F
Sbjct: 126 GISSSYIFSLKPGDKVMMSGPYGDFHIQDTDAE------MLYIGGGAGMAPLRAQILHLF 179

Query: 192 SSKERS-DVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLS--QPDGNWSGETGYVQ 246
            + +    V  +YGAR+   + Y++ F+E E      K    LS  QP+ NW+G  G++ 
Sbjct: 180 RTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIH 239

Query: 247 AAFSRA--KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
                   K    P+     +CG   MA  V  ++   GV    +
Sbjct: 240 QVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNML 284

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score = 84.5 bits (209), Expect = 3e-19
 Identities = 51/273 (18%), Positives = 89/273 (32%), Gaps = 31/273 (11%)

Query: 47  AAVRQDTTVWTPTPLAEISPAAE--SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK 104
           A    +        L      +    LF  S+   D           G+++ +     GK
Sbjct: 3   APALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQV----LGLPIGKHIFVCATIEGK 58

Query: 105 PTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMG 154
               A  +P S     G F+ LVK             G   + L  L  G  +++   +G
Sbjct: 59  LCMRAY-TPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLG 117

Query: 155 R----GFAVDRIQP-PDEYPTVLIFATGSGISPIRSLIESGFS--SKERSDVRLYYGARN 207
                G     I         + +   GSGI+P+  +I++      ++ +++ L Y  R 
Sbjct: 118 HVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRT 177

Query: 208 LKRMAYQDKFKEWESS---GVKIVPVLSQ---PDGNWSGETGYVQAAFSRAKKIFNPQGT 261
              +  +D+   W +     +K+  V+ Q   P+  W    G+V  A  R         T
Sbjct: 178 EDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDT 237

Query: 262 GVVLCGQKQMAEEVTSIVLAE-GVSSEKILKNF 293
             + CG   M +   S  L +           F
Sbjct: 238 LALACGPPPMIQFAISPNLEKMKYDMANSFVVF 270

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score = 79.8 bits (197), Expect = 1e-17
 Identities = 44/267 (16%), Positives = 87/267 (32%), Gaps = 31/267 (11%)

Query: 52  DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIA 111
              +  P  L +    +         +     I       GQ++ L     G        
Sbjct: 12  SPDIKYPLRLIDREIISHDTRRFRFALPSPQHI--LGLPVGQHIYLSARIDGNLVVRPY- 68

Query: 112 SPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMGR------ 155
           +P S     G  + ++K             G  ++ L  ++ GD +E     G       
Sbjct: 69  TPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGK 128

Query: 156 -GFAVDRIQ----PPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLK 209
             FA+   +          +V + A G+GI+P+  +I +     +  +   L +  +  K
Sbjct: 129 GKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEK 188

Query: 210 RMAYQDKFKEWE---SSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVL 265
            +  + + +E     S+  K+   L +    W    G+V     R   +  P +   V++
Sbjct: 189 DILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIR-DHLPPPEEEPLVLM 247

Query: 266 CGQKQMAEEVTSIVLAE-GVSSEKILK 291
           CG   M +      L   G  +E+   
Sbjct: 248 CGPPPMIQYACLPNLDHVGHPTERCFV 274

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score = 75.9 bits (187), Expect = 7e-16
 Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 20/211 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLA----IASPPSFASASGAFEFLVKSV-AGSTAEVLCG-LKK 143
           R GQYL + +   G P        +   P        +   VK    G  +  L      
Sbjct: 184 RPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKREEGGQVSNWLHNHANV 239

Query: 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY 203
           GDVV++    G  F +      D+ P  LI + G G +P+ +++++   +   + V  ++
Sbjct: 240 GDVVKLVAPAGD-FFMA---VADDTPVTLI-SAGVGQTPMLAMLDTLAKAGHTAQVNWFH 294

Query: 204 GARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAF---SRAKKIFNP 258
            A N    A+ D+ KE   S           QP      +  +        S+ +  F+ 
Sbjct: 295 AAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSD 354

Query: 259 QGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
                 LCG     +     ++  GV  E I
Sbjct: 355 PTMQFYLCGPVGFMQFTAKQLVDLGVKQENI 385

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 42/217 (19%), Positives = 73/217 (33%), Gaps = 26/217 (11%)

Query: 80  DAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS---GAFEFLVKSVAGSTA- 135
               +       GQ+L L V +      L    P S +S          L +    +T  
Sbjct: 26  KGTLVDE-MDLPGQFLHLAVPNGA--MLLRR--PISISSWDKRAKTCTILYRIGDETTGT 80

Query: 136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE 195
             L  L+ G  V++   +G GF V  +   D    +LI   G G+ P+  L +     K 
Sbjct: 81  YKLSKLESGAKVDVMGPLGNGFPVAEVTSTD---KILIIGGGIGVPPLYELAKQL--EKT 135

Query: 196 RSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255
              + +  G  +      +++F   ++  +KI       DG   G  G+V    +     
Sbjct: 136 GCQMTILLGFASENVKILENEFSNLKNVTLKIATD----DG-SYGTKGHVGMLMNE---- 186

Query: 256 FNPQGTGVVLCGQKQMAEEVTSIVLAEG---VSSEKI 289
            + +   +  CG   M + V           +S E  
Sbjct: 187 IDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESR 223

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 39/216 (18%), Positives = 74/216 (34%), Gaps = 26/216 (12%)

Query: 90  RAGQYLQLRVVDVGKPTFLA----IASPPSFASASGAFEFLVKSV------AGSTAEVLC 139
             GQY  + +              ++  P+       +   VK         G  + +L 
Sbjct: 186 EPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKREGGGPQPPGYVSNLLH 241

Query: 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD 198
             +  GD V+++   G  F +D      + P VLI + G G++P+ S+++    +  R  
Sbjct: 242 DHVNVGDQVKLAAPYG-SFHID---VDAKTPIVLI-SGGVGLTPMVSMLKVALQAPPR-Q 295

Query: 199 VRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP-DGNWSGETGYVQAAFSRA--K 253
           V   +GARN    A +D+ +E   +   + +     QP   +  G              +
Sbjct: 296 VVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIE 355

Query: 254 KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           K          +CG           +   G+   +I
Sbjct: 356 KSILLPDADYYICGPIPFMRMQHDALKNLGIHEARI 391

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 24/170 (14%)

Query: 138 LCGLKKGDVVEISQVMGR--GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE 195
           +  LK  D +    + G    F +           + I ATG+GISP  S ++  F+  +
Sbjct: 142 IKNLKINDDI---YLTGAHGYFNLPNDAIQKNTNFIFI-ATGTGISPYISFLKKLFAYDK 197

Query: 196 RSDVR----------LYYGARNLKRMAYQDKFKEWESSG---VKIVPVLSQPDGNWSGET 242
            +             +YYG  N   + Y ++ + ++      + I  V S    N    +
Sbjct: 198 NNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSY-KQNSDATS 256

Query: 243 GYVQ-AAFSRAKKIFN---PQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK 288
            YVQ   + R  +  N        + +CG+K +  +V  I+ +     EK
Sbjct: 257 FYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQFDEK 306

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           L  ++ G  V+I+  +G+   +    P D    V++ A G+GI+P+R+ +   F   ER+
Sbjct: 122 LTHIEPGSEVKITGPVGKEMLL----PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERA 177

Query: 198 DVR---------LYYGARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYV 245
                       L +G      + Y+++ +E +       ++   +S+   N  G   Y+
Sbjct: 178 ANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYI 237

Query: 246 Q-AAFSRAKKIFN---PQGTGVVLCGQKQMAEEV----TSIVLAEGVSSEKILKN 292
           Q      A +++     Q T   +CG   M E +    ++    EGV+     K+
Sbjct: 238 QDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKD 292

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 90  RAGQYLQLRVVDVGKPTFLA----IASPPSFASASGAFEFLVKSVAGSTAE------VLC 139
           + GQY+ + V   G          ++   +       +   VK     +         L 
Sbjct: 35  QPGQYIGIEVTPEGSDYREIRQYSLSHASN----GREYRISVKREGVGSDNPGLVSHYLH 90

Query: 140 -GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD 198
             +K GD V++    G  F         E P VLI + G G +P+++++ +     +   
Sbjct: 91  NNVKVGDSVKLYAPAGD-FFYV----ERERPVVLI-SAGVGATPMQAILHTLAKQNKS-G 143

Query: 199 VRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP 258
           V   Y   + K   +  +  +  +    +  V  + +       G +Q     A+ I   
Sbjct: 144 VTYLYACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDVLQGEMQL----AELILPI 199

Query: 259 QGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
           +     LCG     + V   +LA GV   +I
Sbjct: 200 EDGDFYLCGPIGFMQYVVKQLLALGVDKARI 230

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           +C LK GD V ++   G+ F    +   D    ++  ATG+GI+P   + E     K   
Sbjct: 138 MCDLKPGDEVTMTGPSGKKF---LLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIK 194

Query: 198 ---DVRLYYGARNLKRMAYQDKFKEWESSGV--KIVPVLS-QPDGNWSGETGYVQ-AAFS 250
              ++ L YGA     +   D  K  ES     K++  +S +   ++ G   Y+      
Sbjct: 195 FTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVRE 254

Query: 251 RAKKIFN--PQGTGVVLCGQ-KQMAEEV----TSIVLAEGVSSEKILK 291
           +A+ +      G    +CG  K M + V      I    G   E    
Sbjct: 255 QAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGTYEEFKHH 302

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 20/171 (11%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           LC LK G  V+++  +G+   +    P D   T+++  TG+GI+P RS +   F  K   
Sbjct: 136 LCDLKPGAEVKLTGPVGKEMLM----PKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDD 191

Query: 198 D-----VRLYYGARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYVQ-AA 248
                   L+ G      + Y+++F++ +       ++   +S+   N  GE  Y+Q   
Sbjct: 192 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRM 251

Query: 249 FSRAKKIFN---PQGTGVVLCGQKQMAEEV----TSIVLAEGVSSEKILKN 292
              A +++       T V +CG K M + +     S+  AEG+   +  + 
Sbjct: 252 AQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQ 302

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 84  IASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKK 143
           IAS+        +      G+   L +     +   +G  +     V  S    LC  K 
Sbjct: 90  IAST--------RYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVC-SN--FLCNSKP 138

Query: 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS-----D 198
           GD ++++   G+      +   D   T ++ ATG+G++P R  +   F     +      
Sbjct: 139 GDKIQLTGPSGKIM---LLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGL 195

Query: 199 VRLYYGARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYVQ-AAFSRAKK 254
             L+ G  N   + Y ++F  +        +    LS+   N SG   YVQ      + +
Sbjct: 196 AWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDE 255

Query: 255 IFN--PQGTGVVLCGQKQMAEEV----TSIVLAEGVSSEKILKN 292
           IF     G  +  CG K M   +      +    G S ++ L  
Sbjct: 256 IFKLLDGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQ 299

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 53/257 (20%), Positives = 97/257 (37%), Gaps = 35/257 (13%)

Query: 67  AAESLFHVSIDISDA-PDIASSHTRAGQY-LQLRVVDVGKPTFLAIASPPSFASASG-AF 123
            + ++ HV+ DIS+         +       + +     K    +IAS            
Sbjct: 138 GSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTV 197

Query: 124 EFLVKSVAGSTAEV-----------LCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTV 171
              V+ +     E            LC L  G D V+I+  +G+   +    P DE  TV
Sbjct: 198 SLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLL----PDDEDATV 253

Query: 172 LIFATGSGISPIRSLIESGFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWESSGV- 225
           ++ ATG+GI+P R+ +   F  +           L +G      + Y+D F++  +    
Sbjct: 254 VMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPD 313

Query: 226 --KIVPVLSQPDGNWSGETGYVQ-AAFSRAKKIFN---PQGTGVVLCGQKQMAEEV---- 275
             ++   +S+      G   YVQ      A ++F       T V +CG K M   +    
Sbjct: 314 NFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGMQPPIDETF 373

Query: 276 TSIVLAEGVSSEKILKN 292
           T+     G++ E++ ++
Sbjct: 374 TAEAEKRGLNWEEMRRS 390

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 18/149 (12%), Positives = 50/149 (33%), Gaps = 17/149 (11%)

Query: 141 LKKGDVVEISQVM---GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           +K+GD   +  V    G         P +++  +L     +GI  +  + ++    +E  
Sbjct: 1   MKEGD--SLLNVAGPLGTPV------PMEKFGKILAIGAYTGIVEVYPIAKA---WQEIG 49

Query: 198 DVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRA-KKIF 256
           +            +  +++ ++  +  +     L+     +      V        +++ 
Sbjct: 50  NDVTTLHVTFEPMVILKEELEKAVTRHIVEPVPLNPNQD-FLANMKNVSQRLKEKVRELL 108

Query: 257 NPQGTGVVL-CGQKQMAEEVTSIVLAEGV 284
             +   +V   G     ++V  +V   GV
Sbjct: 109 ESEDWDLVFMVGPVGDQKQVFEVVKEYGV 137

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Length = 142

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213
           G         P +++  +L     +GI  +  + ++    +E  +            +  
Sbjct: 10  GTPV------PMEKFGKILAIGAYTGIVEVYPIAKA---WQEIGNDVTTLHVTFEPMVIL 60

Query: 214 QDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245
           +++ ++  +  +     L+     +      V
Sbjct: 61  KEELEKAVTRHIVEPVPLNPNQD-FLANMKNV 91

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 20/150 (13%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR 200
             +GD VE+S      F +D          +L+ A G GI+P+ S+      ++     R
Sbjct: 90  TSEGDAVEVSLPRNE-FPLD----KRAKSFILV-AGGIGITPMLSMARQ-LRAEGLRSFR 142

Query: 201 LYYGARNLKRMAYQDKFKEWESSG-VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ 259
           LYY  R+ +  A+ D+    E    VKI      P   +        + F ++       
Sbjct: 143 LYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHGDPTKAFD-----FWSVFEKS-----KP 192

Query: 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
              V  CG + + + V    +     S  +
Sbjct: 193 AQHVYCCGPQALMDTVRD--MTGHWPSGTV 220

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 47/353 (13%), Positives = 87/353 (24%), Gaps = 132/353 (37%)

Query: 17  SQTFPPMSILR-------RIPLLHLKPQRRRL---------ATLAAAAVRQDTTV----- 55
           +Q F   ++ R       R  LL L+P +  L           +A               
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 56  ---W-------TPTPLAEISPAAESLFH-VSIDISDAPDIASS----------------- 87
              W       +P  + E+    + L + +  + +   D +S+                 
Sbjct: 183 KIFWLNLKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 88  ---HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEF----LVKSVAGSTAEVLCG 140
              +      L L   +V                   AF      L+ +      + L  
Sbjct: 240 SKPYENC--LLVLL--NVQNAKAWN------------AFNLSCKILLTTRFKQVTDFLSA 283

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFAT------------GSGISPIR-SLI 187
                +                  PDE     +                   +P R S+I
Sbjct: 284 ATTTHISLDH--HSMTLT------PDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 188 ESGFSSKE---RSDVRLYYGARNLKRMAYQDKFKEW-ESSGVKIVPVLSQPDGNWSGETG 243
               S ++     D        N K +   DK     ESS    + VL   +        
Sbjct: 334 --AESIRDGLATWD--------NWKHVNC-DKLTTIIESS----LNVLEPAE-------- 370

Query: 244 YVQAAFSRAKKIFNPQGTGV---VLCGQ-KQMAEEVTSIVLAEGVSSEKILKN 292
             +  F     +F P    +   +L      + +    +V+ +      + K 
Sbjct: 371 -YRKMF-DRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 27/146 (18%)

Query: 164 PPD-EYPTVLIFATGSGISPIRSLIE-----SGFSSKERSDVRLYYGARNLKR-MAYQDK 216
           P + + P +L+   G+GI+P RS  +               + L +G R  K    Y+++
Sbjct: 496 PRNPQVPCILV-GPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 554

Query: 217 FKEWESSGVKIVPVLSQPDGNWSGETG----YVQ--AAFSRAKKIFN---PQGTGVVLCG 267
             + ++ G     V  +    +S E      YVQ       A+ ++     QG  + +CG
Sbjct: 555 TLQAKNKG-----VFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCG 609

Query: 268 QKQMAEEVTSI---VLAE--GVSSEK 288
              MA +V      ++ +   +S E 
Sbjct: 610 DVTMAADVLKAIQRIMTQQGKLSEED 635

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	100.0
1tvc_A	250	Methane monooxygenase component C, methane monooxy	100.0
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	100.0
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	100.0
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	100.0
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	100.0
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	100.0
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	100.0
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	100.0
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	100.0
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	100.0
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	100.0
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	100.0
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	100.0
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
2gpj_A	252	Siderophore-interacting protein; structural genomi	100.0
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.95
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.92
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.92
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.92
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.92
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.91
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.9
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.89
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.89
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.88
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.86

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=100.00  E-value=6.4e-41  Score=290.73  Aligned_cols=231  Identities=17%  Similarity=0.302  Sum_probs=196.5

Q ss_pred             ccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEE
Q 022710           50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLV  127 (293)
Q Consensus        50 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~V  127 (293)
                      .+++..|..++|++++.+++++.+++|..+++.  ....|+|||||+|+++..+  ..|+|||++.+..   ++.++|+|
T Consensus         5 ~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~---~~~~~l~v   79 (243)
T 2eix_A            5 ALNPNEYKKFMLREKQIINHNTRLFRFNLHHPE--DVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE---KGYFDLII   79 (243)
T ss_dssp             SCCSSSCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEE
T ss_pred             cCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCC--cccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC---CCEEEEEE
Confidence            356678999999999999999999999986532  2357899999999998433  5799999999865   78999999


Q ss_pred             EEeC-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-CCCCcEEEEEcc
Q 022710          128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGA  205 (293)
Q Consensus       128 k~~~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~  205 (293)
                      |.++ |.+|+||+++++||+|.+.||+|+ |.++.    +..++++|||||+||||++++++++... ....+++|+|++
T Consensus        80 k~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~~----~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~  154 (243)
T 2eix_A           80 KVYEKGQMSQYIDHLNPGDFLQVRGPKGQ-FDYKP----NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFAN  154 (243)
T ss_dssp             ECCTTCHHHHHHHTCCTTCEEEEEEEECS-CCCCT----TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEE
T ss_pred             EEcCCCCcchHhhcCCCCCEEEEECCeEE-EEeCC----CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEc
Confidence            9984 789999999999999999999998 76652    3468999999999999999999999754 345799999999


Q ss_pred             CCccccccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCC-CCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          206 RNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       206 r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      |+.++++|.++|++|..  .++++++++++++++|.+..|++++.+.++ .... ..+..+|+|||+.|++.+++.|++.
T Consensus       155 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~-~~~~~~~~~~vy~CGp~~m~~~v~~~l~~~  233 (243)
T 2eix_A          155 VNEDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQ-HFSPPSSDIKVMMCGPPMMNKAMQGHLETL  233 (243)
T ss_dssp             EEGGGCTTHHHHHHHHHHCTTEEEEEEEEECCTTCCSEESSCCHHHHHH-HSCCTTSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCccccCcCCccCHHHHHH-hcCCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence            99999999999999975  378999999988778888899998654432 1222 2567899999999999999999999


Q ss_pred             CCCccCeec
Q 022710          283 GVSSEKILK  291 (293)
Q Consensus       283 Gv~~~~I~~  291 (293)
                      |+++++||+
T Consensus       234 G~~~~~i~~  242 (243)
T 2eix_A          234 GYTPEQWFI  242 (243)
T ss_dssp             TCCGGGEEE
T ss_pred             CCCHHHEEe
Confidence            999999985

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=100.00  E-value=1.3e-40  Score=290.16  Aligned_cols=231  Identities=18%  Similarity=0.372  Sum_probs=196.6

Q ss_pred             CCCCceeeeEeEeeeCCCCeEEEEEEc-C-CCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710           52 DTTVWTPTPLAEISPAAESLFHVSIDI-S-DAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKS  129 (293)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~l~l~~-~-~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~  129 (293)
                      ....+..++|++++.+++++++++|+. + +... ....|+||||++|++++....|+|||++.|..   ++.++|+||.
T Consensus         6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~i~vk~   81 (250)
T 1tvc_A            6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGN-RGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP---EGRLEFLIRV   81 (250)
T ss_dssp             CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSS-SCCSCCSCCEEEECTTSCSSSEEECCBCCSSS---SCCEEEEECC
T ss_pred             CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcc-cccCcCCCcEEEEEeCCCccccccccCCCCCC---CCeEEEEEEE
Confidence            445678999999999999999999986 5 3200 12578999999999987678899999999975   7899999999


Q ss_pred             eC-CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710          130 VA-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (293)
Q Consensus       130 ~~-G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~  207 (293)
                      ++ |.+|+||+ ++++||+|.+.||+|+ |.+..    +..++++||||||||||++++++++...+...+++|+|++|+
T Consensus        82 ~~~G~~s~~l~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~v~l~~~~r~  156 (250)
T 1tvc_A           82 LPEGRFSDYLRNDARVGQVLSVKGPLGV-FGLKE----RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNT  156 (250)
T ss_dssp             CTTSSSHHHHHHHSSSSSEEEEEEEECC-CSCCC----CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSS
T ss_pred             CCCCCchHHHHhcCCCCCEEEEEcCccc-cccCc----cCCceEEEEEeccCHHHHHHHHHHHHhcCCCceEEEEEEeCC
Confidence            86 78999996 8999999999999999 54432    245889999999999999999999987666689999999999


Q ss_pred             ccccccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          208 LKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       208 ~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      .++++|.++|++|..  .++++++++++++++|.+..|++++.+.+.. .....+..+|+|||+.|++.+++.|++.|++
T Consensus       157 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~  235 (250)
T 1tvc_A          157 EPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDL-ESSDANPDIYLCGPPGMIDAACELVRSRGIP  235 (250)
T ss_dssp             STTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSSSSSHHHHHHH-HHSSSSSEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred             HHHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCCccceehHHHHhhh-hcccCCcEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            999999999999975  4899999999887788888999998776531 1113567899999999999999999999999


Q ss_pred             ccCeecc
Q 022710          286 SEKILKN  292 (293)
Q Consensus       286 ~~~I~~~  292 (293)
                      +++||++
T Consensus       236 ~~~i~~e  242 (250)
T 1tvc_A          236 GEQVFFE  242 (250)
T ss_dssp             CSEEEEC
T ss_pred             HHHEEEE
Confidence            9999986

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=100.00  E-value=5.9e-40  Score=289.83  Aligned_cols=236  Identities=17%  Similarity=0.243  Sum_probs=196.1

Q ss_pred             hccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEE
Q 022710           49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFL  126 (293)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~  126 (293)
                      +.+++..|..++|++++.+++++++++|+.+++.  ....|.|||||+|+++..+  ..|+|||++.+..   ++.++|+
T Consensus         9 ~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~   83 (275)
T 1umk_A            9 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQ--HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD---KGFVDLV   83 (275)
T ss_dssp             SCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTT--CBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC---CSEEEEE
T ss_pred             cccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcc--cccCCCCCcEEEEEEeeCCcEEEeccccCCccCC---CCeEEEE
Confidence            4556778999999999999999999999976532  2357899999999987444  6799999999865   7899999


Q ss_pred             EEEe---------C-CcchHhhhcCCCCCEEEEEeecCCCccccCC----CCC--------CCCCeEEEEEeCcchhHHH
Q 022710          127 VKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRI----QPP--------DEYPTVLIFATGSGISPIR  184 (293)
Q Consensus       127 Vk~~---------~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~----~p~--------~~~~~ivlia~GtGIaP~~  184 (293)
                      ||.+         + |.+|+||+++++||+|.++||+|+ |.+...    .++        ...+++|||||||||||++
T Consensus        84 vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~  162 (275)
T 1umk_A           84 IKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGL-LVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPML  162 (275)
T ss_dssp             EECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS-EEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHH
T ss_pred             EEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccc-eEecCCccccccccccccccccCCceEEEEecCccHhHHH
Confidence            9987         3 789999999999999999999998 533210    001        1467999999999999999


Q ss_pred             HHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccCC-CC
Q 022710          185 SLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQ  259 (293)
Q Consensus       185 sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~  259 (293)
                      ++++++... +...+++|+|++|+.++++|.++|++|...   +++++++++++.+.|.+..|++++.+.++ .... ..
T Consensus       163 ~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~-~l~~~~~  241 (275)
T 1umk_A          163 QVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD-HLPPPEE  241 (275)
T ss_dssp             HHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH-HSCCGGG
T ss_pred             HHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH-hcCCCCC
Confidence            999999765 346899999999999999999999999764   68898888888777888899999865442 1222 25


Q ss_pred             CcEEEEeCChHHHH-HHHHHHHHcCCCccCeec
Q 022710          260 GTGVVLCGQKQMAE-EVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       260 ~~~v~vCGp~~~~~-~~~~~L~~~Gv~~~~I~~  291 (293)
                      +..+|+|||+.|++ .+++.|++.|+++++|++
T Consensus       242 ~~~vyvCGp~~m~~~~v~~~L~~~G~~~~~I~~  274 (275)
T 1umk_A          242 EPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV  274 (275)
T ss_dssp             CCEEEEESCHHHHHHTTHHHHHHHTCCGGGEEE
T ss_pred             CeEEEEECCHHHHHHHHHHHHHHcCCCHHHEEe
Confidence            68899999999999 999999999999999985

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=100.00  E-value=8.3e-40  Score=281.84  Aligned_cols=220  Identities=20%  Similarity=0.357  Sum_probs=186.9

Q ss_pred             eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (293)
Q Consensus        57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s  135 (293)
                      ..++|++++.+++++++++|+.++     ...|+||||++|++++ ...|+|||++.|..   ++.++|+||.++ |..+
T Consensus         3 ~~~~V~~~~~~~~~~~~l~l~~~~-----~~~~~pGq~v~l~~~~-~~~R~ySi~s~~~~---~~~l~l~i~~~~~G~~s   73 (232)
T 1qfj_A            3 LSCKVTSVEAITDTVYRVRIVPDA-----AFSFRAGQYLMVVMDE-RDKRPFSMASTPDE---KGFIELHIGASEINLYA   73 (232)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESS-----CCCCCTTCEEEEESSS-SCEEEEECCSCTTS---TTCEEEEEC------CC
T ss_pred             eEEEEEEEEecCCCEEEEEEecCC-----CCCcCCCCEEEEECCC-CceeeeecCCCCCC---CCcEEEEEEEccCCchh
Confidence            468999999999999999998643     2478999999999986 57899999999975   689999999985 5556


Q ss_pred             Hh-hhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          136 EV-LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       136 ~~-L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      ++ ++++++||+|.+.||+|+ |.+..    +..++++||||||||||++++++++...+...+++|+|++|+.++++|.
T Consensus        74 ~~~~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~  148 (232)
T 1qfj_A           74 KAVMDRILKDHQIVVDIPHGE-AWLRD----DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDL  148 (232)
T ss_dssp             HHHHHHHHHHSEEEEEEEECS-CCCCS----CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTH
T ss_pred             HHHHHhCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhhhH
Confidence            65 668999999999999998 54432    2478999999999999999999999876666899999999999999999


Q ss_pred             HHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH-HHcCCCccCeec
Q 022710          215 DKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV-LAEGVSSEKILK  291 (293)
Q Consensus       215 ~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L-~~~Gv~~~~I~~  291 (293)
                      ++|++|..  .++++++++++++++|.+..|++++.+.+.  ..+..+..+|+|||+.|++.+++.| ++.|+++++||+
T Consensus       149 ~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~--~~~~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~  226 (232)
T 1qfj_A          149 CELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQD--HGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFG  226 (232)
T ss_dssp             HHHHHHHHHCTTEEEEEEESSCCTTCCSEESCHHHHHHHH--CSCCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEEC
T ss_pred             HHHHHHHHHCCCeEEEEEEcCCCCCcCCceeeHHHHHHHh--cCCccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence            99999975  489999999998888888899999887763  3344678899999999999999999 899999999998


Q ss_pred             c
Q 022710          292 N  292 (293)
Q Consensus       292 ~  292 (293)
                      +
T Consensus       227 E  227 (232)
T 1qfj_A          227 D  227 (232)
T ss_dssp             T
T ss_pred             e
Confidence            6

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=3.1e-39  Score=280.01  Aligned_cols=220  Identities=17%  Similarity=0.228  Sum_probs=188.1

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSV  130 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~~  130 (293)
                      .|++++|++++.+++++++++|+.++..  ....|+||||++|+++..+    ++|+|||++.|.    ++.++|+||.+
T Consensus         2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~~~i~vk~~   75 (243)
T 4eh1_A            2 DGRTFVVREKQVESAYVTSFVLVPADGG--AVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASN----GREYRISVKRE   75 (243)
T ss_dssp             CCEEEEEEEEEECSSSEEEEEEEESSCS--CCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC----SSCEEEEEECT
T ss_pred             CcEEEEEEEEEEcCCCeEEEEEEeCCCC--cCCCcCCCCEEEEEEecCCCccccceeeEeccCCC----CCeEEEEEEEe
Confidence            5899999999999999999999976532  2357899999999998653    469999999986    68899999987


Q ss_pred             -----C-CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEE
Q 022710          131 -----A-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY  203 (293)
Q Consensus       131 -----~-G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~  203 (293)
                           + |.+|+||+ ++++||+|.+.||+|+ |.++     +..++++||||||||||++++++++...+... +.++|
T Consensus        76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~-~~~~-----~~~~~~vliagGtGitp~~~~l~~l~~~~~~~-v~l~~  148 (243)
T 4eh1_A           76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGD-FFYV-----ERERPVVLISAGVGATPMQAILHTLAKQNKSG-VTYLY  148 (243)
T ss_dssp             TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECS-CCCC-----CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             ecCCCCCCeehhHHHhcCCCCCEEEEEccCcc-cCcC-----CCCCCEEEEEccccHHHHHHHHHHHHHcCCCe-EEEEE
Confidence                 4 68999997 6999999999999998 5444     36789999999999999999999998665444 99999


Q ss_pred             ccCCccccccHHHHHHHHhC-CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          204 GARNLKRMAYQDKFKEWESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       204 ~~r~~~~~~~~~~l~~l~~~-~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      ++|+.++++|.++|++|... +++++++++++.+++. ..|++++... .  . ...+..+|+|||+.|++.+++.|++.
T Consensus       149 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~s~~~~~~~-~~g~~~~~~~-~--~-~~~~~~vyvCGp~~m~~~v~~~l~~~  223 (243)
T 4eh1_A          149 ACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDV-LQGEMQLAEL-I--L-PIEDGDFYLCGPIGFMQYVVKQLLAL  223 (243)
T ss_dssp             EESSGGGCTTHHHHHHHHHHHTCEEEEEESSCCCTTC-EESSCCCTTS-C--C-CTTTCEEEEEECHHHHHHHHHHHHHH
T ss_pred             EeCChhhhhHHHHHHHHHHhCCeEEEEEEccCCCccc-ccCCccHHHe-e--c-cCCCcEEEEECCHHHHHHHHHHHHHc
Confidence            99999999999999998764 8899999988766544 6778876544 1  2 23678999999999999999999999


Q ss_pred             CCCccCeecc
Q 022710          283 GVSSEKILKN  292 (293)
Q Consensus       283 Gv~~~~I~~~  292 (293)
                      |+++++||++
T Consensus       224 g~~~~~i~~E  233 (243)
T 4eh1_A          224 GVDKARIHYE  233 (243)
T ss_dssp             TCCGGGEEEE
T ss_pred             CCCHHHEEEe
Confidence            9999999986

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=100.00  E-value=1.4e-39  Score=286.60  Aligned_cols=235  Identities=17%  Similarity=0.282  Sum_probs=191.5

Q ss_pred             CCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710           52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKS  129 (293)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~  129 (293)
                      ++..|..++|++++.+++++++++|+.++..  ....++||||++|+++..+  ..|+|||++.+..   .+.++|+||.
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~vk~   82 (270)
T 2cnd_A            8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPD--QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE---IGHFDLLVKV   82 (270)
T ss_dssp             ---CCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEEEC
T ss_pred             CCCceEEEEEEEEEEeCCCeEEEEEECCCCc--cccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC---CCEEEEEEEE
Confidence            4557899999999999999999999976532  2357899999999987433  5799999998864   6899999997


Q ss_pred             e----------CCcchHhhhcCCCCCEEEEEeecCC-------CccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhc
Q 022710          130 V----------AGSTAEVLCGLKKGDVVEISQVMGR-------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS  192 (293)
Q Consensus       130 ~----------~G~~s~~L~~l~~Gd~v~v~gP~G~-------~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~  192 (293)
                      +          .|.+|+||+++++||+|.+.||+|+       .|.++..  ++..++++||||||||||++++++++..
T Consensus        83 ~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~--~~~~~~~vliagGtGiaP~~~~l~~l~~  160 (270)
T 2cnd_A           83 YFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK--QRNARRLAMICGGSGITPMYQIIQAVLR  160 (270)
T ss_dssp             CCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTE--EECCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             eccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCC--cccCCEEEEEeccccHHHHHHHHHHHHh
Confidence            5          3789999999999999999999997       2444310  0247899999999999999999999976


Q ss_pred             c--CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEec---CCCCCCccccccchHHHhhhccCCCCCcEEE
Q 022710          193 S--KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQ---PDGNWSGETGYVQAAFSRAKKIFNPQGTGVV  264 (293)
Q Consensus       193 ~--~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~---~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~  264 (293)
                      .  ....+++|+|++|+.++++|.++|++|...   ++++++++++   ++++|.+..|++++.+.++.......+..+|
T Consensus       161 ~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vy  240 (270)
T 2cnd_A          161 DQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLAL  240 (270)
T ss_dssp             TTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEE
T ss_pred             cCCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEE
Confidence            4  245789999999999999999999999763   6888888877   4556777889999876543211222457899


Q ss_pred             EeCChHHHHH-HHHHHHHcCCCccCeeccC
Q 022710          265 LCGQKQMAEE-VTSIVLAEGVSSEKILKNF  293 (293)
Q Consensus       265 vCGp~~~~~~-~~~~L~~~Gv~~~~I~~~~  293 (293)
                      +|||+.|++. +++.|++.|+++++|+++|
T Consensus       241 vCGp~~m~~~~~~~~L~~~G~~~~~i~~~~  270 (270)
T 2cnd_A          241 ACGPPPMIQFAISPNLEKMKYDMANSFVVF  270 (270)
T ss_dssp             EECCHHHHHTTTHHHHHTTTCCHHHHEEEC
T ss_pred             EECCHHHHHHHHHHHHHHcCCChhhcEEeC
Confidence            9999999997 5899999999999999987

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.8e-38  Score=281.06  Aligned_cols=226  Identities=22%  Similarity=0.395  Sum_probs=189.4

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-------------------------------CC
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-------------------------------VG  103 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-------------------------------~~  103 (293)
                      .+..++|++++.+++++++++|+.++..   ...|+|||||+|+++.                               ..
T Consensus         8 ~~~~~~V~~~~~~t~~~~~l~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   84 (290)
T 2r6h_A            8 KEWECEVLSNKNVSTFIKEFVVKLPEGE---TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEE   84 (290)
T ss_dssp             CEEEEEEEEEEESSSSEEEEEEECSTTC---CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSC
T ss_pred             eEEEEEEEEeeecCCCeEEEEEEcCCCC---ccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCC
Confidence            4567999999999999999999976432   2468999999999874                               24


Q ss_pred             ceeeEEecCCCCCCCCCCeEEEEEEEe----------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCC
Q 022710          104 KPTFLAIASPPSFASASGAFEFLVKSV----------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDE  167 (293)
Q Consensus       104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~  167 (293)
                      ..|+|||++.|..   .+.++|+||.+                .|.+|+||+++++||+|.+.||+|+ |.+.     +.
T Consensus        85 ~~R~ySi~s~~~~---~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~-----~~  155 (290)
T 2r6h_A           85 TVRAYSMANYPAE---GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGD-FHIQ-----DT  155 (290)
T ss_dssp             EEEEEECCSCTTC---CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECC-CCCC-----SS
T ss_pred             cceeeeccCCCCC---CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccC-CcCC-----CC
Confidence            5799999999975   78999999962                4789999999999999999999998 5443     26


Q ss_pred             CCeEEEEEeCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHh--CCcEEEEEEecC--CCCCCccc
Q 022710          168 YPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQP--DGNWSGET  242 (293)
Q Consensus       168 ~~~ivlia~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~--~~~~~~~~  242 (293)
                      .+++|||||||||||+++++++++.. ....+++|+|++|+.++++|.++|+++..  .+++++++++++  ++.|.+..
T Consensus       156 ~~~~vliagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~  235 (290)
T 2r6h_A          156 DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYV  235 (290)
T ss_dssp             SCEEEEEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCCSCB
T ss_pred             CCeEEEEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCCCee
Confidence            78999999999999999999987754 34579999999999999999999999975  478999998875  34577788


Q ss_pred             cccchHHHhhhc--cCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          243 GYVQAAFSRAKK--IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       243 g~v~~~~~~~~~--~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      |++++.+.+...  .....+..+|+|||+.|++.+++.|++.|+++++||++
T Consensus       236 g~v~~~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e  287 (290)
T 2r6h_A          236 GFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFD  287 (290)
T ss_dssp             SCHHHHHHHHTTTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             EecCHHHHHhHHhhccCcCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEec
Confidence            999887754311  12234678999999999999999999999999999986

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=100.00  E-value=7.9e-38  Score=272.07  Aligned_cols=222  Identities=22%  Similarity=0.360  Sum_probs=186.2

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      .|..++|++++.+++++++++|. ++     ...|+||||++|+++..  ...|+|||++.|.    ++.++|+||.++ 
T Consensus         3 ~~~~~~V~~~~~~~~~~~~l~l~-~~-----~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~l~~~v~~~~~   72 (248)
T 1fdr_A            3 DWVTGKVTKVQNWTDALFSLTVH-AP-----VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD----NPDLEFYLVTVPD   72 (248)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEE-CC-----CCCCCTTCEEEEEECC---CEEEEEECCSCTT----CSSEEEEEECCTT
T ss_pred             ceEEEEEEEEEEcCCCEEEEEEe-CC-----CCCcCCCCcEEEEccCCCCeeeeeecccCCCC----CCcEEEEEEEeCC
Confidence            58899999999999999999996 32     14789999999999853  4679999999986    588999999875 


Q ss_pred             CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |.+|+||+++++||+|.+. ||+|. |.++..   .+.++++||||||||||++++++++...+...+++|+|++|+.++
T Consensus        73 G~~s~~l~~l~~Gd~v~v~~gP~G~-f~l~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~  148 (248)
T 1fdr_A           73 GKLSPRLAALKPGDEVQVVSEAAGF-FVLDEV---PHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAAD  148 (248)
T ss_dssp             CSSHHHHHTCCTTCEEEEESSCBCC-CSGGGS---CCCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGG
T ss_pred             CchhhHHHhCCCcCEEEEecCCcce-eEcCCC---CCCceEEEEEecccHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHH
Confidence            7899999999999999999 99998 766531   136899999999999999999999875555689999999999999


Q ss_pred             cccHHHHHHHHh---CCcEEEEEEecCCCCCCccccccchHHHhhh------ccCCCCCcEEEEeCChHHHHHHHHHH-H
Q 022710          211 MAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAK------KIFNPQGTGVVLCGQKQMAEEVTSIV-L  280 (293)
Q Consensus       211 ~~~~~~l~~l~~---~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~------~~~~~~~~~v~vCGp~~~~~~~~~~L-~  280 (293)
                      ++|.++|+++..   .++++++++++++. +.+..|++++.+.+..      ...+..+..+|+|||++|++.+++.| +
T Consensus       149 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~  227 (248)
T 1fdr_A          149 LSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKE  227 (248)
T ss_dssp             CTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHHHHHHH
Confidence            999999999976   47899988888653 3345788988765421      01234678999999999999999999 9


Q ss_pred             HcCCCccCeec
Q 022710          281 AEGVSSEKILK  291 (293)
Q Consensus       281 ~~Gv~~~~I~~  291 (293)
                      +.|+++++|+.
T Consensus       228 ~~G~~~~~i~~  238 (248)
T 1fdr_A          228 TRQMTKHLRRR  238 (248)
T ss_dssp             HHCCCBCBTTB
T ss_pred             HcCCChHHcCC
Confidence            99999998764

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=3e-38  Score=286.93  Aligned_cols=224  Identities=22%  Similarity=0.347  Sum_probs=191.9

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G  132 (293)
                      ..+..++|++++.+++++++++|+.++..  ....|+||||++|++++...+|+|||++.|.    ++.++|+||.++ |
T Consensus       106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~----~~~l~~~vk~~~~G  179 (338)
T 1krh_A          106 IHHFEGTLARVENLSDSTITFDIQLDDGQ--PDIHFLAGQYVNVTLPGTTETRSYSFSSQPG----NRLTGFVVRNVPQG  179 (338)
T ss_dssp             CEEEEEEEEEEEESSSSEEEEEEEECTTC--CCCCCCTTCEEEEECTTSSCEEEEECCSCTT----CSEEEEEEECCTTC
T ss_pred             ceEEEEEEEEEEEcCCCEEEEEEEeCCCC--CCCCcCCCCeEEEEcCCCCccccccccCCCC----CCeEEEEEEEcCCC
Confidence            35778999999999999999999976531  1257899999999999767889999999986    689999999986 6


Q ss_pred             cchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710          133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (293)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~  211 (293)
                      .+|+||+ ++++||+|.+.||+|+ |.+..     ..++++||||||||||++++++++...+...+++|+|++|+.+++
T Consensus       180 ~~S~~L~~~l~~Gd~v~v~gP~G~-f~~~~-----~~~~~vliagGtGiaP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~  253 (338)
T 1krh_A          180 KMSEYLSVQAKAGDKMSFTGPFGS-FYLRD-----VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDL  253 (338)
T ss_dssp             HHHHHHHTTCCTTCEEEEEEEECS-CSCCC-----CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGC
T ss_pred             CchhhHhhccCCCCEEEEECCccc-eEeCC-----CCceEEEEEccccHhHHHHHHHHHHHcCCCCeEEEEEEeCCHHHh
Confidence            8999996 7999999999999998 54442     348999999999999999999999876666899999999999999


Q ss_pred             ccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710          212 AYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI  289 (293)
Q Consensus       212 ~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I  289 (293)
                      +|.++|++|..  .+++++++++++++.|. ..|++++.+.+. ...+ .+..+|+|||+.|++.+++.|++.|+++++|
T Consensus       254 ~~~~el~~l~~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~-~~~~-~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i  330 (338)
T 1krh_A          254 VALEQLDALQQKLPWFEYRTVVAHAESQHE-RKGYVTGHIEYD-WLNG-GEVDVYLCGPVPMVEAVRSWLDTQGIQPANF  330 (338)
T ss_dssp             CCHHHHHHHHHHCTTEEEEEEETTCCSSSS-EESCSGGGCCGG-GGGG-GCSEEEEEEEHHHHHHHHHHHHHHTCCCSEE
T ss_pred             hhHHHHHHHHHhCCCeEEEEEEecCCCCCC-ccCccCHHHHHh-hccc-CCcEEEEECCHHHHHHHHHHHHHcCCCHHHE
Confidence            99999999975  37999999998776654 678888876532 1222 5678999999999999999999999999999


Q ss_pred             ecc
Q 022710          290 LKN  292 (293)
Q Consensus       290 ~~~  292 (293)
                      |++
T Consensus       331 ~~e  333 (338)
T 1krh_A          331 LFE  333 (338)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=100.00  E-value=1e-37  Score=289.24  Aligned_cols=227  Identities=19%  Similarity=0.269  Sum_probs=189.7

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS  129 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~  129 (293)
                      ..|.+++|++++.+++++++++|+.++..  ....|+|||||.|+++..+    .+|+|||++.|.    ++.++|+||.
T Consensus       150 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~  223 (396)
T 1gvh_A          150 EGTRDFRIVAKTPRSALITSFELEPVDGG--AVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKR  223 (396)
T ss_dssp             SSEEEEEEEEEEECSSSEEEEEEEETTCC--CCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC----SSCEEEEEEC
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCC--cCCCCCCCCeEEEEecCCCCccceeecceeccCCC----CCeEEEEEEE
Confidence            46789999999999999999999976432  1247899999999998433    479999999986    6789999998


Q ss_pred             eC-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710          130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (293)
Q Consensus       130 ~~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~  207 (293)
                      .+ |.+|+||++ +++||+|.++||+|. |.++.    +..+++|||||||||||++++++++...+...+++++|++|+
T Consensus       224 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~~~~~~~v~l~~~~r~  298 (396)
T 1gvh_A          224 EEGGQVSNWLHNHANVGDVVKLVAPAGD-FFMAV----ADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAEN  298 (396)
T ss_dssp             CTTCHHHHHHHHTCCTTCEEEEEEEECS-CCCCC----CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESC
T ss_pred             cCCCcchHHHHhcCCCCCEEEEEcCCcc-eECCC----CCCCCEEEEecchhHhHHHHHHHHHHhcCCCCcEEEEEEeCC
Confidence            74 789999996 999999999999996 76642    357899999999999999999999987666689999999999


Q ss_pred             ccccccHHHHHHHHhC--CcEEEEEEecCCCCC-----CccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHH
Q 022710          208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL  280 (293)
Q Consensus       208 ~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~  280 (293)
                      .++++|.++|++|..+  ++++++++++++..|     .+..|+++......  .....+..+|+|||++|++.+++.|+
T Consensus       299 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~--~~~~~~~~vyvCGp~~m~~~v~~~L~  376 (396)
T 1gvh_A          299 GDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEG--AFSDPTMQFYLCGPVGFMQFTAKQLV  376 (396)
T ss_dssp             TTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSS--CCCCTTCEEEEESCHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHHHHhh--ccCCCCCEEEEeCCHHHHHHHHHHHH
Confidence            9999999999999864  688988888865432     24567887653331  10123788999999999999999999


Q ss_pred             HcCCCccCeeccC
Q 022710          281 AEGVSSEKILKNF  293 (293)
Q Consensus       281 ~~Gv~~~~I~~~~  293 (293)
                      +.|+++++||++.
T Consensus       377 ~~Gv~~~~i~~E~  389 (396)
T 1gvh_A          377 DLGVKQENIHYEC  389 (396)
T ss_dssp             HTTCCGGGEEEEC
T ss_pred             HcCCCHHHEEEec
Confidence            9999999999873

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=100.00  E-value=1.7e-37  Score=288.31  Aligned_cols=226  Identities=17%  Similarity=0.301  Sum_probs=188.7

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-C---CceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-V---GKPTFLAIASPPSFASASGAFEFLVKS  129 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~  129 (293)
                      ..|.+++|++++.+++++++++|+.++..  ....|+|||||.|+++. .   ..+|+|||++.|.    ++.++|.||.
T Consensus       152 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~  225 (403)
T 1cqx_A          152 KGWRTFVIREKRPESDVITSFILEPADGG--PVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKR  225 (403)
T ss_dssp             SSCEEEEEEEEEECSSSEEEEEEEETTCC--CCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC----SSCEEEEEEC
T ss_pred             CcceeEEEEEEEEcCCCeEEEEEEeCCCC--cCCCCCCCCEEEEEEecCCCCcceeecceecCCCC----CCeEEEEEEE
Confidence            46889999999999999999999976432  12478999999999983 2   2479999999986    6889999999


Q ss_pred             eC------CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEE
Q 022710          130 VA------GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY  202 (293)
Q Consensus       130 ~~------G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~  202 (293)
                      .+      |.+|+||+ ++++||+|.++||+|. |.++.    +..+++|||||||||||++++++++.. +...+++++
T Consensus       226 ~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~-~~~~~v~l~  299 (403)
T 1cqx_A          226 EGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS-FHIDV----DAKTPIVLISGGVGLTPMVSMLKVALQ-APPRQVVFV  299 (403)
T ss_dssp             CCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS-CSCCT----TCCSCEEEEESSCCHHHHHHHHHHHTC-SSCCCEEEE
T ss_pred             CCCCCCCCCeehHHHhhCCCCCCEEEEecCccC-cccCC----CCCCCEEEEEecccHhhHHHHHHHHHh-CCCCcEEEE
Confidence            84      88999999 5999999999999996 76642    357899999999999999999999976 456789999


Q ss_pred             EccCCccccccHHHHHHHHh--CCcEEEEEEecCCCCC-----CccccccchHHHhhhccCCCCCcEEEEeCChHHHHHH
Q 022710          203 YGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEV  275 (293)
Q Consensus       203 ~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~  275 (293)
                      |++|+.++++|+++|++|..  .+++++++++++.+.|     .+..|+++......... . .+..+|+|||++|++.+
T Consensus       300 ~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~-~-~~~~vyvCGp~~m~~~v  377 (403)
T 1cqx_A          300 HGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSIL-L-PDADYYICGPIPFMRMQ  377 (403)
T ss_dssp             EEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHC-C-TTCEEEEESSHHHHHHH
T ss_pred             EEeCChhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhccC-C-CCCEEEEeCCHHHHHHH
Confidence            99999999999999999976  3789998988876554     24567887643332111 1 26889999999999999


Q ss_pred             HHHHHHcCCCccCeeccC
Q 022710          276 TSIVLAEGVSSEKILKNF  293 (293)
Q Consensus       276 ~~~L~~~Gv~~~~I~~~~  293 (293)
                      ++.|++.|+++++||++.
T Consensus       378 ~~~L~~~Gv~~~~i~~E~  395 (403)
T 1cqx_A          378 HDALKNLGIHEARIHYEV  395 (403)
T ss_dssp             HHHHHHTTCCGGGEEECC
T ss_pred             HHHHHHcCCCHHHeEEee
Confidence            999999999999999873

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=5.7e-37  Score=275.44  Aligned_cols=223  Identities=22%  Similarity=0.341  Sum_probs=184.2

Q ss_pred             cCCCCceeeeEeEeeeCCCC-----eEEEEEEcCCCccccccCCCCCeEEEEEEcCC---C---ceeeEEecCCCCCCC-
Q 022710           51 QDTTVWTPTPLAEISPAAES-----LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFAS-  118 (293)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~---~~r~ySi~s~p~~~~-  118 (293)
                      ..++....++|++++.++++     +++++|+.+.     ...|.|||||.|++++.   +   .+|+|||++.|..+. 
T Consensus        28 ~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~-----~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~  102 (310)
T 3vo2_A           28 YKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG-----EIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFG  102 (310)
T ss_dssp             BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-----CCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTT
T ss_pred             ecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC-----CCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCC
Confidence            34445679999999999997     9999999542     24689999999999753   2   479999999986211 


Q ss_pred             CCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHH
Q 022710          119 ASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE  188 (293)
Q Consensus       119 ~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~  188 (293)
                      +++.++|+||.+          .|.+|+||+++++||+|.+.||+|++|.+.    .+..++++||||||||||++++++
T Consensus       103 ~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~  178 (310)
T 3vo2_A          103 DSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMP----KDPNATVIMLATGTGIAPFRSFLW  178 (310)
T ss_dssp             SSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCB----SCTTCEEEEEEEGGGGHHHHHHHH
T ss_pred             CCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCC----CCCCCCEEEEeCCcchhHHHHHHH
Confidence            278999999986          388999999999999999999999966443    235789999999999999999999


Q ss_pred             HhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cC
Q 022710          189 SGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IF  256 (293)
Q Consensus       189 ~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~  256 (293)
                      ++.....     ..++.|+|++|+.++++|.++|++|...   +++++++++++++.|.+.++++++.+.+...    ..
T Consensus       179 ~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l  258 (310)
T 3vo2_A          179 KMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELL  258 (310)
T ss_dssp             HHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHH
T ss_pred             HHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhc
Confidence            9975432     3689999999999999999999999874   7899999999988888888999887765211    12


Q ss_pred             CCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          257 NPQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       257 ~~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      ...+..+|+|||+.|++.++++|.+.
T Consensus       259 ~~~~~~vyvCGp~~M~~~v~~~L~~~  284 (310)
T 3vo2_A          259 KKDNTYVYMCGLKGMEKGIDDIMLNL  284 (310)
T ss_dssp             TSTTEEEEEEESTTHHHHHHHHHHHH
T ss_pred             ccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            34578999999999999999999753

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=100.00  E-value=7.2e-37  Score=283.87  Aligned_cols=226  Identities=17%  Similarity=0.279  Sum_probs=187.0

Q ss_pred             CCCceeeeEeEeeeCCCCeEEEEEEcCCCccc--cccCCCCCeEEEEEEcCC------CceeeEEecCCCCCCCCCCeEE
Q 022710           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDI--ASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASGAFE  124 (293)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~~~~~~~~  124 (293)
                      -..|++++|++++.+++++++++|+.++...+  ..+.|+|||||.|+++.+      ..+|+|||++.|.    ++.++
T Consensus       146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~----~~~~~  221 (399)
T 4g1v_A          146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST----KNGLR  221 (399)
T ss_dssp             SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC----TTCEE
T ss_pred             CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC----CCeEE
Confidence            34699999999999999999999997654322  112789999999997532      3579999999997    68899


Q ss_pred             EEEEEe-------CCcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCC
Q 022710          125 FLVKSV-------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER  196 (293)
Q Consensus       125 ~~Vk~~-------~G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~  196 (293)
                      |.||..       .|.+|+||+ ++++||+|.+.||+|. |.++........+++|||||||||||++++++++...+..
T Consensus       222 i~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~  300 (399)
T 4g1v_A          222 FAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGD-FAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN  300 (399)
T ss_dssp             EEEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECS-CCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT
T ss_pred             EEEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccc-eeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC
Confidence            999983       478999997 7999999999999998 7665310001478999999999999999999999877667


Q ss_pred             CcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHH
Q 022710          197 SDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEE  274 (293)
Q Consensus       197 ~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~  274 (293)
                      .+++++|++|+.++++|.++|+++...  +++++++++++.       |+++......  ... .+..+|+|||++|++.
T Consensus       301 ~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~-------g~~~~~~l~~--~~~-~~~~vyvCGp~~m~~~  370 (399)
T 4g1v_A          301 RPIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE-------PLINAAFLKE--KSP-AHADVYTCGSLAFMQA  370 (399)
T ss_dssp             SCEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS-------CCCCHHHHHH--HSC-SSCEEEEEECHHHHHH
T ss_pred             CCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC-------CcccHHHHHh--hCC-CCCEEEEECCHHHHHH
Confidence            899999999999999999999999864  688888887753       6777644432  122 2789999999999999


Q ss_pred             HHHHHHHcCCCccCeeccC
Q 022710          275 VTSIVLAEGVSSEKILKNF  293 (293)
Q Consensus       275 ~~~~L~~~Gv~~~~I~~~~  293 (293)
                      +++.|.+.|+++++||+++
T Consensus       371 v~~~L~~~Gv~~~~i~~E~  389 (399)
T 4g1v_A          371 MIGHLKELEHRDDMIHYEP  389 (399)
T ss_dssp             HHHHHHHTTCCGGGEEEEE
T ss_pred             HHHHHHHcCCCHHHeeeec
Confidence            9999999999999999873

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=100.00  E-value=2.4e-37  Score=270.53  Aligned_cols=222  Identities=21%  Similarity=0.316  Sum_probs=185.1

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      .|..++|++++.+++++++++|+.++.     ..|+||||++|+++..+  ..|+|||++.|.    ++.++|+||.++ 
T Consensus         2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~~~~~i~~~~~   72 (257)
T 2qdx_A            2 NLYTERVLSVHHWNDTLFSFKTTRNPG-----LRFKTGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVPD   72 (257)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCTT
T ss_pred             ceEEEEEEEEEEcCCCeEEEEEeCCCC-----CccCCCCEEEEEecCCCCceeeeeEeecCCC----CCeEEEEEEEeCC
Confidence            588999999999999999999986432     46899999999998543  679999999986    589999999875 


Q ss_pred             CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710          132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (293)
Q Consensus       132 G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~  210 (293)
                      |.+|+||+++++||+|.+. ||+|. |.++..   ...++++||||||||||++++++++...+...+++|+|++|+.++
T Consensus        73 G~~s~~l~~l~~Gd~v~v~~gp~G~-f~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~  148 (257)
T 2qdx_A           73 GPLTSRLQHLKEGDELMVSRKPTGT-LVHDDL---LPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSE  148 (257)
T ss_dssp             CTTHHHHTTCCTTCEEEECSCCBCS-CCGGGB---CSCSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGG
T ss_pred             CcchhHHHhCCCCCEEEEecCCCCC-ccCCcc---cCCCeEEEEEeceEHHHHHHHHHHHHhcCCCCeEEEEEEcCCHHH
Confidence            7899999999999999999 89998 666521   136899999999999999999999865444578999999999999


Q ss_pred             cccHHHHH-HHHh---------CCcEEEEEEecCCCCCCccccccchHHHhhhc-----c--CCCCCcEEEEeCChHHHH
Q 022710          211 MAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-----I--FNPQGTGVVLCGQKQMAE  273 (293)
Q Consensus       211 ~~~~~~l~-~l~~---------~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-----~--~~~~~~~v~vCGp~~~~~  273 (293)
                      ++|.++|+ +|..         .++++++++++++.   +..|++++.+.+...     .  .+..+..+|+|||+.|++
T Consensus       149 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~  225 (257)
T 2qdx_A          149 LAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLE  225 (257)
T ss_dssp             CTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHH
T ss_pred             hHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHH
Confidence            99999999 8864         47888888887632   357888887654210     1  123678999999999999


Q ss_pred             HHHHHHHHcCCCcc-------Ceecc
Q 022710          274 EVTSIVLAEGVSSE-------KILKN  292 (293)
Q Consensus       274 ~~~~~L~~~Gv~~~-------~I~~~  292 (293)
                      .+++.|++.|++++       +|+++
T Consensus       226 ~v~~~l~~~G~~~~~~~~~~~~i~~E  251 (257)
T 2qdx_A          226 ETSAVLDSFGLKISPRMGEPGDYLIE  251 (257)
T ss_dssp             HHHHHHHHTTCCBCSSTTSCBSEEEE
T ss_pred             HHHHHHHHcCCChHHhcCCCCcEEEe
Confidence            99999999999999       88764

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=100.00  E-value=7.9e-37  Score=269.58  Aligned_cols=221  Identities=18%  Similarity=0.334  Sum_probs=184.2

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC---CCceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD---VGKPTFLAIASPPSFASASGAFEFLVKSVA  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~---~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~  131 (293)
                      .+..++|++++.+++++++++|+.++.     ..|+||||++|++++   ....|+|||++.|.    ++.++|+||.++
T Consensus        15 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~----~~~~~l~v~~~~   85 (272)
T 2bgi_A           15 LPDAQTVTSVRHWTDTLFSFRVTRPQT-----LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAW----DEELEFYSIKVP   85 (272)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEECTTSCEEEEEEECCSCTT----CSEEEEEEECCT
T ss_pred             EeEEEEEEEEEEcCCCEEEEEEeCCCC-----CccCCCCEEEEEeccCCCCeeeeeeeeccCCC----CCeEEEEEEEcc
Confidence            356899999999999999999986432     468999999999984   23679999999986    689999999875


Q ss_pred             -CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 022710          132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK  209 (293)
Q Consensus       132 -G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~  209 (293)
                       |.+|+||+++++||+|.+. ||+|. |.++..   ...++++||||||||||++++++++...+...+++|+|++|+.+
T Consensus        86 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~  161 (272)
T 2bgi_A           86 DGPLTSRLQHIKVGEQIILRPKPVGT-LVIDAL---LPGKRLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVA  161 (272)
T ss_dssp             TCTTHHHHTTCCTTCEEEEEEEEECS-CCGGGB---CCCSEEEEEEEGGGGHHHHHHTTCGGGGTSCSEEEEEEEESSSG
T ss_pred             CCCchhHHHhCCCCCEEEEeeCCCCc-cccccc---ccCCeEEEEeecccHHHHHHHHHHHHhcCCCCcEEEEEEeCCHH
Confidence             7899999999999999999 99998 766531   13689999999999999999999987655568999999999999


Q ss_pred             ccccHHHHH-HHHh---------CCcEEEEEEecCCCCCCccccccchHHHhhhc-----c--CCCCCcEEEEeCChHHH
Q 022710          210 RMAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-----I--FNPQGTGVVLCGQKQMA  272 (293)
Q Consensus       210 ~~~~~~~l~-~l~~---------~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-----~--~~~~~~~v~vCGp~~~~  272 (293)
                      +++|.++|+ +|..         .+++++++++++.   .+..|++++.+.+...     .  .+..+..+|+|||+.|+
T Consensus       162 ~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~  238 (272)
T 2bgi_A          162 ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFN  238 (272)
T ss_dssp             GGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHH
T ss_pred             HhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHH
Confidence            999999999 9875         4788888888763   2457888887654210     1  12367899999999999


Q ss_pred             HHHHHHHHHcCCCccCeec
Q 022710          273 EEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       273 ~~~~~~L~~~Gv~~~~I~~  291 (293)
                      +.+++.|++.|+++++|++
T Consensus       239 ~~v~~~l~~~G~~~~~i~~  257 (272)
T 2bgi_A          239 VDVMKVLESYGLREGANSE  257 (272)
T ss_dssp             HHHHHHHHTTTCCBCBTTB
T ss_pred             HHHHHHHHHcCCChHHcCC
Confidence            9999999999999987764

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=3e-37  Score=277.89  Aligned_cols=226  Identities=19%  Similarity=0.283  Sum_probs=185.8

Q ss_pred             CCCCceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------------------------
Q 022710           52 DTTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------------  102 (293)
Q Consensus        52 ~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------------------------  102 (293)
                      .++....++|++++.++     .++++++|+.+.     .+.|.+|||+.|..|+.                        
T Consensus        11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-----~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (316)
T 3jqq_A           11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-----LFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTN   85 (316)
T ss_dssp             CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-----CCCCCTTCEEEECTTCC------------------------
T ss_pred             cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-----CcceecCcEeEEECCCccccccccccccccccccccccccc
Confidence            34445689999999998     799999999743     26899999999998753                        


Q ss_pred             ------------CceeeEEecCCCCCCCCCCeEEEEEEEe-------------CCcchHhhhcCCCCCEEEEEeecCCCc
Q 022710          103 ------------GKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       103 ------------~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f  157 (293)
                                  ..+|+|||+|.|.    ++.++|+||..             .|.+|+||+++++||+|.++||+|. |
T Consensus        86 h~~~~~~~~~g~~~~R~ySIaS~p~----~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-f  160 (316)
T 3jqq_A           86 HNNIALSHIKKQRCARLYSISSSNN----MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY-F  160 (316)
T ss_dssp             -----------CCCCEEEEBCSCTT----SSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECC-C
T ss_pred             ccccccccCCCcccceeeecccCCC----CCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCc-e
Confidence                        2589999999997    57899999974             2789999999999999999999998 7


Q ss_pred             cccCCCCCC---CCCeEEEEEeCcchhHHHHHHHHhhccC----------CCCcEEEEEccCCccccccHHHHHHHHhC-
Q 022710          158 AVDRIQPPD---EYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVRLYYGARNLKRMAYQDKFKEWESS-  223 (293)
Q Consensus       158 ~l~~~~p~~---~~~~ivlia~GtGIaP~~sll~~~~~~~----------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-  223 (293)
                      .++.    +   ..+++|||||||||||++++++++....          ...++.|+|++|+.++++|.++|++|... 
T Consensus       161 ~l~~----~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~  236 (316)
T 3jqq_A          161 NLPN----DAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMY  236 (316)
T ss_dssp             CCCT----THHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHC
T ss_pred             EcCC----cccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhC
Confidence            6652    2   2689999999999999999999997543          24789999999999999999999999874 


Q ss_pred             --CcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCChHHHHHHHHHHHHcC----CCccCeecc
Q 022710          224 --GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAEEVTSIVLAEG----VSSEKILKN  292 (293)
Q Consensus       224 --~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~~~~~~~~~~L~~~G----v~~~~I~~~  292 (293)
                        +++++++++++ +.|.+.+|++++.+.+...    .....+..+|+|||+.|++.++++|++.|    ++.++||++
T Consensus       237 ~~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~~~~v~~~rih~E  314 (316)
T 3jqq_A          237 PNNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVHVE  314 (316)
T ss_dssp             TTTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC----CHHHHTTEEEE
T ss_pred             CCcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCCCcccccccEEEE
Confidence              78999999987 4677888999988766311    11125789999999999999999999999    589999987

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=100.00  E-value=1.3e-37  Score=274.20  Aligned_cols=222  Identities=21%  Similarity=0.312  Sum_probs=179.9

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA  131 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~  131 (293)
                      ..|..++|++++.+++++++++|+.++     ...|+||||++|+++..+  ..|+|||++.|.    ++.++|+||.++
T Consensus        17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~~~~~v~~~~   87 (271)
T 4fk8_A           17 SKFDTATVLSVHHWTDTLFSFTCTRDQ-----ALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY----EEHLEFFSIKVQ   87 (271)
T ss_dssp             -CEEEEEEEEEEEEETTEEEEEECCCT-----TCCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSSEEEEEECCT
T ss_pred             ccceeEEEEEEEEcCCCEEEEEEEcCC-----CCCcCCCCEEEEEccCCCceeeeeEeccCCCC----CCcEEEEEEEEC
Confidence            469999999999999999999998543     257899999999998543  479999999886    678999999875


Q ss_pred             -CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 022710          132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK  209 (293)
Q Consensus       132 -G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~  209 (293)
                       |.+|+||+++++||+|.+. ||+|+ |.+...   +..++++||||||||||++++++++...+...+++++|++|+.+
T Consensus        88 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-~~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~  163 (271)
T 4fk8_A           88 NGPLTSRLQHLKVGDPVLIGKKPTGT-LVADNL---LPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKG  163 (271)
T ss_dssp             TCTTHHHHTTCCTTCEEEEESCCBCS-CCGGGB---CCCSEEEEEECGGGGHHHHHHTTCHHHHHHCSEEEEEECCCSHH
T ss_pred             CCchhhHHhcCCCCCEEEEecCCCcc-eecCCc---CCCCeEEEEECCEEHHHHHHHHHHHHhcCCCCCEEEEEecCCHH
Confidence             7899999999999999999 99998 544421   25789999999999999999999987655567999999999999


Q ss_pred             ccccHHHHHHHHhC----------CcEEEEEEecCCCCCCccccccchHHHhhhc-----c--CCCCCcEEEEeCChHHH
Q 022710          210 RMAYQDKFKEWESS----------GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-----I--FNPQGTGVVLCGQKQMA  272 (293)
Q Consensus       210 ~~~~~~~l~~l~~~----------~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-----~--~~~~~~~v~vCGp~~~~  272 (293)
                      +++|.++|+++..+          +++++++.+++..   +..|++++.+.+...     .  .+..+..+|+|||+.|+
T Consensus       164 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~  240 (271)
T 4fk8_A          164 ELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAML  240 (271)
T ss_dssp             HHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHH
T ss_pred             HHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHH
Confidence            99999999988664          4677777766543   457888876654110     0  23467899999999999


Q ss_pred             HHHHHHHHHcCCCccCeec
Q 022710          273 EEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       273 ~~~~~~L~~~Gv~~~~I~~  291 (293)
                      +++++.|++.|+++++|+.
T Consensus       241 ~~v~~~l~~~gv~~~~i~~  259 (271)
T 4fk8_A          241 KDTTELLKKAGLVEGKNSA  259 (271)
T ss_dssp             HHHHHHHHHTTCCBCBTTB
T ss_pred             HHHHHHHHHcCCchhhcCC
Confidence            9999999999999988764

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=2.1e-36  Score=271.83  Aligned_cols=224  Identities=20%  Similarity=0.286  Sum_probs=178.1

Q ss_pred             cCCCCceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--------CceeeEEecCCCCCC
Q 022710           51 QDTTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--------GKPTFLAIASPPSFA  117 (293)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~p~~~  117 (293)
                      ..+..+..++|++++.++     +++++|+|+.+..     ..|+|||||+|++++.        ..+|+|||++.|...
T Consensus        23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~   97 (311)
T 3lo8_A           23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD   97 (311)
T ss_dssp             BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS-----SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred             cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC-----CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence            345567899999999999     8999999997532     5789999999999864        258999999998631


Q ss_pred             -CCCCeEEEEEEEe--------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhH
Q 022710          118 -SASGAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISP  182 (293)
Q Consensus       118 -~~~~~~~~~Vk~~--------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP  182 (293)
                       .+.+.++|+||.+              .|.+|+||+++++||+|.+.||+|.+|....   .+..+++|||||||||||
T Consensus        98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~---~~~~~~~vlIagGtGIaP  174 (311)
T 3lo8_A           98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPE---EDPNATHIMIATGTGVAP  174 (311)
T ss_dssp             TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCC---SCTTCEEEEEEEGGGGHH
T ss_pred             CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCC---cCCCCCEEEEECCEEHHH
Confidence             1248999999974              3789999999999999999999999554321   125789999999999999


Q ss_pred             HHHHHHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc
Q 022710          183 IRSLIESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK  254 (293)
Q Consensus       183 ~~sll~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~  254 (293)
                      ++++++++...+.     ..++.|+|++|+.++++|.++|++|...   +++++++++++++.|.+.++++++.+.+...
T Consensus       175 ~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~  254 (311)
T 3lo8_A          175 FRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSD  254 (311)
T ss_dssp             HHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHH
T ss_pred             HHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHH
Confidence            9999999875432     3689999999999999999999999864   7899999999988888888999887765210


Q ss_pred             -c--CCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          255 -I--FNPQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       255 -~--~~~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                       .  ....+..+|+|||+.|+++++++|++.
T Consensus       255 ~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~  285 (311)
T 3lo8_A          255 EIFKLLDGGAHIYFCGLKGMMPGIQDTLKKV  285 (311)
T ss_dssp             HHHHHHHTTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             HHHHhhcCCcEEEEECCHHHHHHHHHHHHHH
Confidence             0  002568999999999999999988764

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=1e-35  Score=267.74  Aligned_cols=222  Identities=21%  Similarity=0.329  Sum_probs=181.3

Q ss_pred             CCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCC-CC
Q 022710           52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SA  119 (293)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~-~~  119 (293)
                      .+..+..++|++++.+++     ++++++|+.++.     ..|+||||+.|++++.      ..+|+|||++.|... .+
T Consensus        33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~  107 (314)
T 1fnb_A           33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-----IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGD  107 (314)
T ss_dssp             BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred             CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-----CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence            345577899999999997     899999997542     4689999999998753      257999999998521 12


Q ss_pred             CCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710          120 SGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (293)
Q Consensus       120 ~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~  189 (293)
                      .+.++|+||..          .|.+|+||+++++||+|.+.||+|++|.+..    +..+++|||||||||||+++++++
T Consensus       108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~~  183 (314)
T 1fnb_A          108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPK----DPNATIIMLGTGTGIAPFRSFLWK  183 (314)
T ss_dssp             SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBS----CTTCEEEEEEEGGGGHHHHHHHHH
T ss_pred             CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCC----CCCCCEEEEeCCccHHHHHHHHHH
Confidence            58999999973          3889999999999999999999999665431    246899999999999999999999


Q ss_pred             hhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cCC
Q 022710          190 GFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN  257 (293)
Q Consensus       190 ~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~  257 (293)
                      +...+.     ..+++|+|++|+.++++|.++|++|...   +++++++++++++.|.+.++++++.+.+...    ...
T Consensus       184 ~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~  263 (314)
T 1fnb_A          184 MFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLK  263 (314)
T ss_dssp             HHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTT
T ss_pred             HHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHh
Confidence            875431     4689999999999999999999999763   6899999999887788888999887664211    122


Q ss_pred             CCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          258 PQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       258 ~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      ..+..+|+|||+.|++.+.+.|++.
T Consensus       264 ~~~~~vyvCGp~~m~~~v~~~L~~~  288 (314)
T 1fnb_A          264 KDNTYVYMCGLKGMEKGIDDIMVSL  288 (314)
T ss_dssp             STTEEEEEEECTTHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCHHHHHHHHHHHHHH
Confidence            2578899999999999999888764

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=5.4e-36  Score=277.98  Aligned_cols=228  Identities=23%  Similarity=0.346  Sum_probs=186.4

Q ss_pred             CCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCC-CC
Q 022710           52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SA  119 (293)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~-~~  119 (293)
                      .+..+..++|++++.+++     ++++|+|+.++.    ...|+|||||.|++++.      ..+|+|||++.|..+ .+
T Consensus       118 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~  193 (402)
T 2b5o_A          118 RPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG----DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMED  193 (402)
T ss_dssp             CSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS----CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTS
T ss_pred             cCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC----CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCC
Confidence            344567899999999999     999999997543    25789999999998752      257999999998631 12


Q ss_pred             CCeEEEEEEEe-----------CCcchHhhhcCCCC-CEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHH
Q 022710          120 SGAFEFLVKSV-----------AGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI  187 (293)
Q Consensus       120 ~~~~~~~Vk~~-----------~G~~s~~L~~l~~G-d~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll  187 (293)
                      ++.++|+||..           .|.+|+||+++++| |+|.+.||+|++|.++.    +..+++|||||||||||+++++
T Consensus       194 ~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~----~~~~~vvlIAgGtGIaP~~s~l  269 (402)
T 2b5o_A          194 NKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPD----DEDATVVMLATGTGIAPFRAFL  269 (402)
T ss_dssp             SCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCS----CTTCEEEEEEEGGGGHHHHHHH
T ss_pred             CCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCc----cCCCCEEEEEcccCHHHHHHHH
Confidence            58999999972           48899999999999 99999999999665442    3578999999999999999999


Q ss_pred             HHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----c
Q 022710          188 ESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----I  255 (293)
Q Consensus       188 ~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~  255 (293)
                      +++.....     ..++.|+|++|+.++++|.++|++|...   +++++++++++++.|.+.++++++.+.+...    .
T Consensus       270 ~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~  349 (402)
T 2b5o_A          270 WRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEM  349 (402)
T ss_dssp             HHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHH
T ss_pred             HHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHH
Confidence            99875432     3789999999999999999999999863   6899999999877788888898887655211    1


Q ss_pred             CCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          256 FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       256 ~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      ....+..+|+|||+.|++.+.++|.+.|+...
T Consensus       350 l~~~~~~vyvCGP~~M~~~v~~~L~~~g~~~g  381 (402)
T 2b5o_A          350 IQKPNTHVYMCGLKGMQPPIDETFTAEAEKRG  381 (402)
T ss_dssp             HTSTTEEEEEEECGGGHHHHHHHHHHHHHHTT
T ss_pred             hccCCcEEEEECCHHHHHHHHHHHHHHHHHcC
Confidence            12346889999999999999999988776543

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=1.6e-35  Score=265.10  Aligned_cols=227  Identities=19%  Similarity=0.314  Sum_probs=180.9

Q ss_pred             CCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCC-CCCC
Q 022710           54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SASG  121 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~-~~~~  121 (293)
                      .....++|++++.+++     ++++++|+.++..    ..|+||||+.|.+++.      ..+|+|||++.|... .+++
T Consensus        19 ~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~   94 (304)
T 2bmw_A           19 NAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN----LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK   94 (304)
T ss_dssp             TBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC----CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred             CCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc----cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCC
Confidence            3456799999999999     8999999976432    4789999999998753      246999999988521 1268


Q ss_pred             eEEEEEEEe-----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHh
Q 022710          122 AFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG  190 (293)
Q Consensus       122 ~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~  190 (293)
                      .++|+||..           .|.+|+||+++++||+|.+.||+|++|.+.    .+..+++|||||||||||++++++++
T Consensus        95 ~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~~~  170 (304)
T 2bmw_A           95 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLP----DDPEANVIMLAGGTGITPMRTYLWRM  170 (304)
T ss_dssp             EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCC----SCTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred             EEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCC----CCCCCCEEEEecCccHHHHHHHHHHH
Confidence            999999972           378999999999999999999999866443    13468999999999999999999998


Q ss_pred             hccC---------CCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh----c
Q 022710          191 FSSK---------ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK----K  254 (293)
Q Consensus       191 ~~~~---------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~----~  254 (293)
                      +...         ...+++|+|++|+.++++|.++|++|...   +++++++++++++.|.+.++++++.+.+..    .
T Consensus       171 ~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~  250 (304)
T 2bmw_A          171 FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ  250 (304)
T ss_dssp             HCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHH
T ss_pred             HHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHH
Confidence            7432         23689999999999999999999999763   789999999987777777788877665421    0


Q ss_pred             cCCCCCcEEEEeCChHHHHHHHHHH----HHcCCCccC
Q 022710          255 IFNPQGTGVVLCGQKQMAEEVTSIV----LAEGVSSEK  288 (293)
Q Consensus       255 ~~~~~~~~v~vCGp~~~~~~~~~~L----~~~Gv~~~~  288 (293)
                      .....+..+|+|||+.|++.++++|    .+.|++.++
T Consensus       251 ~~~~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~  288 (304)
T 2bmw_A          251 LIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSD  288 (304)
T ss_dssp             HHTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred             HhhcCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            1123567899999999999887776    455776543

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=2.3e-35  Score=266.25  Aligned_cols=216  Identities=19%  Similarity=0.262  Sum_probs=175.8

Q ss_pred             CCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710           52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA  131 (293)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~  131 (293)
                      ++..|..++|++++.+++++++++|+.++..  ....|+|||||+|++++ +..|+|||++.|..   .+.++|.||.++
T Consensus         4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~-g~~R~ySi~s~~~~---~~~l~i~Vk~~~   77 (321)
T 2pia_A            4 QEDGFLRLKIASKEKIARDIWSFELTDPQGA--PLPPFEAGANLTVAVPN-GSRRTYSLCNDSQE---RNRYVIAVKRDS   77 (321)
T ss_dssp             TTTTCEEEEEEEEEEEETTEEEEEEECTTCC--CCCCCCTTCEEEEECTT-SCEEEEECCSCTTC---CSEEEEEEECCT
T ss_pred             CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCC--cCCCCCCCCEEEEECCC-CCcEEEEeCCCCCC---CCeEEEEEEEec
Confidence            4457999999999999999999999976532  12478999999999985 48899999999875   689999999886


Q ss_pred             -Cc-chHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710          132 -GS-TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (293)
Q Consensus       132 -G~-~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~  208 (293)
                       |. +|+||+ ++++||+|.+.||+|. |.++.     ..++++|||||+||||+++|++++...+. .+++|+|++|+.
T Consensus        78 ~G~g~S~~L~~~l~~Gd~v~v~gP~g~-f~l~~-----~~~~~vliagG~GItP~~s~l~~l~~~~~-~~v~l~~~~r~~  150 (321)
T 2pia_A           78 NGRGGSISFIDDTSEGDAVEVSLPRNE-FPLDK-----RAKSFILVAGGIGITPMLSMARQLRAEGL-RSFRLYYLTRDP  150 (321)
T ss_dssp             TSCSHHHHHHHSCCTTCEEEECCCBCC-SCCCT-----TCSEEEEEEEGGGHHHHHHHHHHHHHHCS-SEEEEEEEESCG
T ss_pred             CCcchhHHHHhcCCCCCEEEEeCCccc-cccCC-----CCCCEEEEEecccHhHHHHHHHHHHHcCC-CcEEEEEEECCh
Confidence             55 899999 8999999999999997 76652     47899999999999999999999986543 789999999999


Q ss_pred             cccccHHHHHHHHh-CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          209 KRMAYQDKFKEWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       209 ~~~~~~~~l~~l~~-~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      ++++|.++|++|.. .+++++  .+.+..   +....+.+.+..     ...+..+|+|||+.|++.+++.|++  ++++
T Consensus       151 ~~~~~~~el~~l~~~~~~~~~--~~~~~~---~g~~~~~~ll~~-----~~~~~~vyvCGP~~m~~~v~~~l~~--~~~~  218 (321)
T 2pia_A          151 EGTAFFDELTSDEWRSDVKIH--HDHGDP---TKAFDFWSVFEK-----SKPAQHVYCCGPQALMDTVRDMTGH--WPSG  218 (321)
T ss_dssp             GGCTTHHHHHSTTTTTTEEEE--ECTTCT---TSCCCHHHHHSS-----CCTTEEEEEESCHHHHHHHHHHTTT--SCTT
T ss_pred             hhhHHHHHHhcCccCCeEEEE--ECCCcc---cCccCHHHHhcc-----cCCCCEEEEECCHHHHHHHHHHHHh--CCHh
Confidence            99999999998852 255554  333221   122334433322     2356889999999999999999987  8999


Q ss_pred             Ceecc
Q 022710          288 KILKN  292 (293)
Q Consensus       288 ~I~~~  292 (293)
                      +||++
T Consensus       219 ~i~~E  223 (321)
T 2pia_A          219 TVHFE  223 (321)
T ss_dssp             CEEEE
T ss_pred             hEEEE
Confidence            99986

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=100.00  E-value=1.2e-35  Score=260.59  Aligned_cols=211  Identities=17%  Similarity=0.202  Sum_probs=174.2

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~  134 (293)
                      .++|++++.+++++++++|+.++    ....|+||||+.|++++.  ...|+|||++.|..   ++.++|+||.++ |.+
T Consensus         7 ~~~V~~~~~~t~~~~~l~l~~~~----~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~   79 (262)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTL----VDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDETTG   79 (262)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGG----GGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCTTSH
T ss_pred             ceEEEEEEEecCCEEEEEEEcCc----ccccCCCCceEEEEcCCCCceeeEEEEeeeecCC---CCEEEEEEEEecCCch
Confidence            79999999999999999998643    135789999999999863  57899999998865   789999999954 789


Q ss_pred             hHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710          135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (293)
Q Consensus       135 s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (293)
                      |+||+++++||+|.+.||+|++|.++..   ...++++||||||||||++++++++...+  .+++|+|++|+.++++|.
T Consensus        80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~---~~~~~~lliagGtGitP~~s~l~~l~~~~--~~v~l~~~~r~~~~~~~~  154 (262)
T 1ep3_B           80 TYKLSKLESGAKVDVMGPLGNGFPVAEV---TSTDKILIIGGGIGVPPLYELAKQLEKTG--CQMTILLGFASENVKILE  154 (262)
T ss_dssp             HHHHHTCCTTCEEEEEEEESBCCCCTTC---CTTSEEEEEEEGGGSHHHHHHHHHHHHHT--CEEEEEEEESSGGGCCCH
T ss_pred             HHHHhcCCCCCEEEEEcccCCCccCCCc---cCCCeEEEEECcCcHHHHHHHHHHHHHcC--CeEEEEEEcCCHHHhhhH
Confidence            9999999999999999999987866520   13789999999999999999999997543  789999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          215 DKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       215 ~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      ++|++|...  +++++ +  ++.|.+..|++++.+.+.  .  +....+|+|||+.|++.+++ |++.|++ .+|..
T Consensus       155 ~el~~l~~~--~~~~~-~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~-l~~~gv~-~~vs~  220 (262)
T 1ep3_B          155 NEFSNLKNV--TLKIA-T--DDGSYGTKGHVGMLMNEI--D--FEVDALYTCGAPAMLKAVAK-KYDQLER-LYISM  220 (262)
T ss_dssp             HHHHTSTTE--EEEEE-E--TTCSSSEESCHHHHHHHC--C--SCCSEEEEESCHHHHHHHHH-HTTTCSS-EEEEC
T ss_pred             HHHhhhccC--cEEEE-E--CCCCCcceeehHHHHHhh--c--cCCCEEEEECCHHHHHHHHH-HHhCCCC-EEEEe
Confidence            999987542  44433 2  234566788999866552  2  23578999999999999999 9999998 44543

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=5.6e-35  Score=262.79  Aligned_cols=228  Identities=21%  Similarity=0.288  Sum_probs=181.0

Q ss_pred             CceeeeEeEeeeCCCC--------------eEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------------Cceee
Q 022710           55 VWTPTPLAEISPAAES--------------LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------GKPTF  107 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~--------------~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------------~~~r~  107 (293)
                      ....++|++++.++++              +++++|+.++.    ...|+|||||.|++++.             ..+|+
T Consensus        20 ~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~   95 (314)
T 2rc5_A           20 NPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS----AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRL   95 (314)
T ss_dssp             BCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT----TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEE
T ss_pred             CCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC----cCcccCCCEEEEECCCCccccCccchhhcCCCcee
Confidence            4568999999999998              99999997542    24789999999999863             24699


Q ss_pred             EEecCCCCCC-CCCCeEEEEEEEe-----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEE
Q 022710          108 LAIASPPSFA-SASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA  175 (293)
Q Consensus       108 ySi~s~p~~~-~~~~~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia  175 (293)
                      |||++.|... .+++.++|+||.+           .|.+|+||+++++||+|.+.||+|++|.+...   +..+++||||
T Consensus        96 ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~---~~~~~~vlIa  172 (314)
T 2rc5_A           96 YSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNT---DFSGDIMFLA  172 (314)
T ss_dssp             EECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSS---CBCSCEEEEE
T ss_pred             eeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCC---CCCCCEEEEE
Confidence            9999998511 1168999999985           36799999999999999999999996644310   2478999999


Q ss_pred             eCcchhHHHHHHHHhhccC---CCCcEEEEEccCCccccccHHHHHHHHh--CCcEEEEEEecCCCCC-CccccccchHH
Q 022710          176 TGSGISPIRSLIESGFSSK---ERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNW-SGETGYVQAAF  249 (293)
Q Consensus       176 ~GtGIaP~~sll~~~~~~~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~-~~~~g~v~~~~  249 (293)
                      |||||||++++++++....   ...+++|+|++|+.++++|.++|++|..  .+++++++++++++.+ .+.++++++.+
T Consensus       173 gGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l  252 (314)
T 2rc5_A          173 TGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRV  252 (314)
T ss_dssp             EGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHH
Confidence            9999999999999997543   2368999999999999999999999975  3799999999875543 67788888776


Q ss_pred             Hhhh--c--cCCCCCcEEEEe-CChHHHHHHHHHHHHcCCCccCeecc
Q 022710          250 SRAK--K--IFNPQGTGVVLC-GQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       250 ~~~~--~--~~~~~~~~v~vC-Gp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      .+..  .  .....+. +|+| ||+.|++.+++.|.+.|+  ++|+++
T Consensus       253 ~~~~~~l~~~~~~~~~-~yvCGGp~~m~~~v~~~L~~~g~--~~i~~e  297 (314)
T 2rc5_A          253 REQAEAVKKILNGGGR-FYICGGPKGMEKGVIEEIQKISG--NTGTYE  297 (314)
T ss_dssp             HHTHHHHHHHHHHTCE-EEEEESSTTTHHHHHHHHHHHHT--CCSCHH
T ss_pred             HHhHHHHHHHhhcCCe-EEEeCCcHHHHHHHHHHHHHHHh--ccchHH
Confidence            5421  0  0111234 4999 999999999999999888  566543

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=100.00  E-value=4.1e-32  Score=236.88  Aligned_cols=213  Identities=7%  Similarity=0.002  Sum_probs=163.1

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---CceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSV  130 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~  130 (293)
                      ..|..++|++++.+++++++|+|+.++...+  ..++|||||.|+++..   ...|.|||++.+     .+.++|.|+.+
T Consensus         6 ~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~--~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~-----~~~~~i~~~~~   78 (252)
T 2gpj_A            6 PAPRELEVIRSTYITPHMLRITLGGAGLAGF--PADQESAYIKLLFPQAGERPLMRTYTIRQQR-----DDEIDVDFVLH   78 (252)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEESGGGTTC--CSCCTTCEEEEEECCTTSCCEEEEEECCEEE-----TTEEEEEEECC
T ss_pred             CCcEEEEEEEEEEcCCCEEEEEEEcCChhhc--CCCCCCCeEEEEcccCCCCCCCCceeeeccC-----CCEEEEEEEEe
Confidence            4688999999999999999999996532211  2479999999999853   467999999976     35788888876


Q ss_pred             C--CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710          131 A--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (293)
Q Consensus       131 ~--G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~  208 (293)
                      +  |.+|+||+++++||+|.+.||.|. |.++.     ..++++||||||||||+++|++++.   ...++++++++++.
T Consensus        79 ~~~G~~S~~l~~l~~Gd~l~v~gP~G~-f~l~~-----~~~~~lliagGtGitPi~s~l~~l~---~~~~~~~~~~~~~~  149 (252)
T 2gpj_A           79 DTDGPASSWAKTAQVGELIQIGGPGLK-KLINF-----EADWFLLAGDMTALPAISVNLAKLP---NNAVGYAVIEVLSE  149 (252)
T ss_dssp             SSCCHHHHHHHHCCTTCEEEEEEEECC-CCCCS-----SSSEEEEEEEGGGHHHHHHHHHHSC---TTCEEEEEEEESSG
T ss_pred             CCCCcHHHHHhhCCCCCEEEEecCCCC-CcCCC-----CCceEEEEcchhhHHHHHHHHHhCC---CCCcEEEEEEECCH
Confidence            4  789999999999999999999996 76652     4578999999999999999999983   23578888999998


Q ss_pred             cccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHH-HcCCCcc
Q 022710          209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL-AEGVSSE  287 (293)
Q Consensus       209 ~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~-~~Gv~~~  287 (293)
                      +++...+.     ..+++++++.+.... +.+  ..+.+.+.+  ......+..+|+|||++|++.+++.|+ +.|++++
T Consensus       150 ~d~~~l~~-----~~~~~v~~~~~~~~~-~~g--~~~~~~l~~--~~~~~~~~~vy~CGP~~m~~av~~~l~~~~G~~~~  219 (252)
T 2gpj_A          150 ADIQPLVH-----PEHVELHWVINPEAD-PEG--RPLVERIAQ--LPWLAGEPAVWIACEFNSMRALRRHFKQAHALPKS  219 (252)
T ss_dssp             GGCCCCCC-----CTEEEEEEEECSSCC-TTC--HHHHHHHTT--SCCCSSCEEEEEEEEHHHHHHHHHHHHHHCCCCGG
T ss_pred             HHhhcccC-----CCCcEEEEEeCCCCC-ccc--HHHHHHHHh--ccCCCCCcEEEEEcCHHHHHHHHHHHHHhcCCCHH
Confidence            88653321     125677766554322 101  123333332  111224678999999999999999998 7999999


Q ss_pred             Ceecc
Q 022710          288 KILKN  292 (293)
Q Consensus       288 ~I~~~  292 (293)
                      +||++
T Consensus       220 ~i~~e  224 (252)
T 2gpj_A          220 HFYTS  224 (252)
T ss_dssp             GEEEE
T ss_pred             HeEEE
Confidence            99975

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.95  E-value=6.1e-28  Score=221.53  Aligned_cols=182  Identities=20%  Similarity=0.369  Sum_probs=148.1

Q ss_pred             CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCCc
Q 022710           88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRGF  157 (293)
Q Consensus        88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~f  157 (293)
                      .+.||||+.+..+  ..+|+|||+|+|..  +++.++|+||.+         .|..|+||++ +++||+|.+.||.+..|
T Consensus       145 ~~~~Gq~v~l~~~--~~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F  220 (374)
T 1ddg_A          145 QLDAEALINLLRP--LTPRLYSIASSQAE--VENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNF  220 (374)
T ss_dssp             CCCHHHHHHHSCB--CCCEEEEBCCCTTT--SCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTS
T ss_pred             CCCHHHHHhhccC--CCCccceecCCCCC--CCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCc
Confidence            6899999999876  57899999999852  158999999986         3789999997 99999999999555448


Q ss_pred             cccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecC
Q 022710          158 AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQP  234 (293)
Q Consensus       158 ~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~  234 (293)
                      .++.    +..++++|||+||||||++++++++...+...++.|+|++|+. ++++|++||++|...+  +++++++|++
T Consensus       221 ~lp~----~~~~piimIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Srd  296 (374)
T 1ddg_A          221 RLPA----NPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRD  296 (374)
T ss_dssp             CCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTS
T ss_pred             cCCC----CCCCCEEEEECCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEEecC
Confidence            6652    3567999999999999999999999876666899999999998 7899999999998764  4888888886


Q ss_pred             CCCCCccccccchHHHhhhc----cCCCCCcEEEEeC-ChHHHHHHHHHHHHc
Q 022710          235 DGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCG-QKQMAEEVTSIVLAE  282 (293)
Q Consensus       235 ~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCG-p~~~~~~~~~~L~~~  282 (293)
                      +.    .++|+++.+.+...    .. ..+..+|+|| |+.|++.+.++|.+.
T Consensus       297 ~~----~k~yVq~~l~~~~~~l~~~l-~~~~~vYvCG~p~~M~~~V~~~L~~i  344 (374)
T 1ddg_A          297 QK----EKVYVQDKLREQGAELWRWI-NDGAHIYVCGDANRMAKDVEQALLEV  344 (374)
T ss_dssp             SS----SCCCHHHHHHHTHHHHHHHH-HTTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred             CC----CCccHHHHHHHhHHHHHHHH-hCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            53    36788777654210    11 1468899999 999999999888654

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.92  E-value=5.9e-25  Score=205.48  Aligned_cols=173  Identities=21%  Similarity=0.342  Sum_probs=136.0

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEEee-cCCCccccCCCCCCCCC
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQV-MGRGFAVDRIQPPDEYP  169 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~gP-~G~~f~l~~~~p~~~~~  169 (293)
                      ..+|+|||+|+|..  .++.++|+|+.+            .|.+|+||+++++||+|.+.|| .|. |.+..    +...
T Consensus       208 l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~lp~----~~~~  280 (435)
T 1f20_A          208 LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPS-FHLPR----NPQV  280 (435)
T ss_dssp             CCCEEEECCSCTTT--STTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTT-SSCCS----CTTS
T ss_pred             CCCccccccCCccc--CCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCC-ccCCC----CCCC
Confidence            46799999999862  147899999853            2788999999999999999994 555 76652    3467


Q ss_pred             eEEEEEeCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHhCC--cEEEEEEecCCCCCCcc
Q 022710          170 TVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGE  241 (293)
Q Consensus       170 ~ivlia~GtGIaP~~sll~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~  241 (293)
                      +++|||+||||||++++++++...     ....++.|+|++|+.+ +++|+++|++|...+  +++++++|++++.   .
T Consensus       281 piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~---~  357 (435)
T 1f20_A          281 PCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDR---P  357 (435)
T ss_dssp             CEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTS---C
T ss_pred             CEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCC---C
Confidence            899999999999999999998652     3467899999999998 789999999998765  3788888887543   2


Q ss_pred             ccccchHHHhh-hc----cCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          242 TGYVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       242 ~g~v~~~~~~~-~~----~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      ++|+++.+.+. ..    .....+..+|+|||+.|++++.++|.+.+..
T Consensus       358 k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i~~~  406 (435)
T 1f20_A          358 KKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQ  406 (435)
T ss_dssp             CCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHHHH
Confidence            67888776543 11    0112567899999999999999998776543

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.92  E-value=3e-25  Score=204.75  Aligned_cols=183  Identities=22%  Similarity=0.439  Sum_probs=141.0

Q ss_pred             CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-----------CcchHhhhcCCCCCEEE--EEeecC
Q 022710           88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-----------GSTAEVLCGLKKGDVVE--ISQVMG  154 (293)
Q Consensus        88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-----------G~~s~~L~~l~~Gd~v~--v~gP~G  154 (293)
                      ...+||++.+. | ...+|+|||+|+|..  +++.++|+|+.+.           |..|+||+++++||+|.  ++||+|
T Consensus       156 ~~p~~~~l~~l-p-~l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g  231 (393)
T 4dql_A          156 EMKFSEFIALL-P-SIRPRYYSISSSPRV--DEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS  231 (393)
T ss_dssp             CCCHHHHHHTS-C-BCCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS
T ss_pred             CCCHHHHHHhC-C-CCcceeeeccccccc--cCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC
Confidence            45678877663 3 257899999999863  1478999998652           66899999999999998  689999


Q ss_pred             CCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCC-ccccccHHHHHHHHhC-CcEEE
Q 022710          155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARN-LKRMAYQDKFKEWESS-GVKIV  228 (293)
Q Consensus       155 ~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~---~~~-~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~-~i~~~  228 (293)
                      . |.++.    +...+++|||+||||||+++++++..   ..+ ...++.|+|++|+ .++++|+++|++|... +++++
T Consensus       232 ~-F~lp~----~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l~l~  306 (393)
T 4dql_A          232 E-FTLPK----DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLH  306 (393)
T ss_dssp             C-CCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSCEEE
T ss_pred             C-cccCc----cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCeEEE
Confidence            7 76652    35679999999999999999999852   222 3468999999999 5799999999999875 57999


Q ss_pred             EEEecCCCCCCccccccchHHHhhhcc---CCCCCcEEEEeCCh-HHHHHHHHHHHHc
Q 022710          229 PVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQK-QMAEEVTSIVLAE  282 (293)
Q Consensus       229 ~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~v~vCGp~-~~~~~~~~~L~~~  282 (293)
                      +++|++++.   .++|+++.+.+....   .-..+..+|+|||. .|.+++.++|.+.
T Consensus       307 ~a~Sr~~~~---~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i  361 (393)
T 4dql_A          307 TAFSRMPNQ---PKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKS  361 (393)
T ss_dssp             EEESSCTTS---CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCC---CCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHH
Confidence            999986442   467888876542110   01246899999995 6777888887653

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.92  E-value=3.2e-25  Score=217.74  Aligned_cols=182  Identities=20%  Similarity=0.321  Sum_probs=141.3

Q ss_pred             CCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEEeecCCCcc
Q 022710           91 AGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFA  158 (293)
Q Consensus        91 pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~  158 (293)
                      |+||+...+|. ..+|+|||+|.|..  .++.++|+|+.+            .|..|+||+++++||+|.+.+|.+..|.
T Consensus       418 p~~~l~~~lp~-l~~R~YSIsSsp~~--~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~  494 (688)
T 1tll_A          418 PATLLLTQLSL-LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFH  494 (688)
T ss_dssp             CHHHHHHHSCB-CCCEEEEBCSCTTT--STTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGS
T ss_pred             CHHHHHHhCcc-cceeEEeecCCccc--CCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcc
Confidence            56666555553 46899999999852  147899998854            1788999999999999999994443386


Q ss_pred             ccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHhCC--cEEEEE
Q 022710          159 VDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPV  230 (293)
Q Consensus       159 l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--i~~~~~  230 (293)
                      +..    +...++||||+||||||++++++++...     ....++.|+|++|+.+ +++|+++|++|...+  ++++++
T Consensus       495 lp~----~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a  570 (688)
T 1tll_A          495 LPR----NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTA  570 (688)
T ss_dssp             CCS----CTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEE
T ss_pred             cCc----CCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEE
Confidence            652    3467999999999999999999998753     3567899999999998 689999999998764  478888


Q ss_pred             EecCCCCCCccccccchHHHhh-hc----cCCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710          231 LSQPDGNWSGETGYVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEEVTSIVLAE  282 (293)
Q Consensus       231 ~s~~~~~~~~~~g~v~~~~~~~-~~----~~~~~~~~v~vCGp~~~~~~~~~~L~~~  282 (293)
                      +++++..+   ++|+++.+.+. ..    .....+..+|+|||+.|++.+.++|.+.
T Consensus       571 ~Sr~~~~~---k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i  624 (688)
T 1tll_A          571 YSREPDRP---KKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI  624 (688)
T ss_dssp             ESSCTTSC---CCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred             ECCCCCCC---ccchhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            88875432   57888766543 10    0112468899999999999999999875

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.92  E-value=8.7e-25  Score=208.73  Aligned_cols=172  Identities=18%  Similarity=0.349  Sum_probs=131.6

Q ss_pred             ceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcC-----------CCCC-------EEEEEeec
Q 022710          104 KPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGL-----------KKGD-------VVEISQVM  153 (293)
Q Consensus       104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l-----------~~Gd-------~v~v~gP~  153 (293)
                      .+|+|||+|+|..  +++.++|+||.+            .|..|+||+++           ++||       .|.+.+|.
T Consensus       290 ~~R~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~  367 (539)
T 2qtl_A          290 QPRPYSCASSSLF--HPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRT  367 (539)
T ss_dssp             CCEEEECCSCTTT--STTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECS
T ss_pred             cceEEeecCCccC--CCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeee
Confidence            4689999999851  168999999976            27789999986           8999       99999999


Q ss_pred             CCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhc---c---CCCCcEEEEEccCCc-cccccHHHHHHHHhCC--
Q 022710          154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS---S---KERSDVRLYYGARNL-KRMAYQDKFKEWESSG--  224 (293)
Q Consensus       154 G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~---~---~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--  224 (293)
                      |..|.+..    +...++||||+||||||+++++++...   .   ....++.||||+|+. ++++|+++|++|...+  
T Consensus       368 g~~F~Lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~  443 (539)
T 2qtl_A          368 TNSFHLPD----DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL  443 (539)
T ss_dssp             CCCCCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS
T ss_pred             CCCccCCc----cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC
Confidence            85587653    346799999999999999999999642   1   145789999999999 6999999999998764  


Q ss_pred             cEEEEEEecCCC--CCCccccccchHHHhhhcc----CCCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710          225 VKIVPVLSQPDG--NWSGETGYVQAAFSRAKKI----FNPQGTGVVLCGQK-QMAEEVTSIVLA  281 (293)
Q Consensus       225 i~~~~~~s~~~~--~~~~~~g~v~~~~~~~~~~----~~~~~~~v~vCGp~-~~~~~~~~~L~~  281 (293)
                      +++++++|+++.  .|.+.++|+++.+.+....    ....+..+|+|||+ .|++++.++|.+
T Consensus       444 ~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~  507 (539)
T 2qtl_A          444 THLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQ  507 (539)
T ss_dssp             CEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHH
Confidence            489999998754  3566789999887663211    11246789999997 999999988864

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.91  E-value=1.3e-25  Score=182.06  Aligned_cols=133  Identities=14%  Similarity=0.201  Sum_probs=96.6

Q ss_pred             CCCCCE-EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 022710          141 LKKGDV-VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE  219 (293)
Q Consensus       141 l~~Gd~-v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~  219 (293)
                      +++||+ +.++||+|++|.++      ..++++||||||||||++++++++.+.+  .+++++ ++|+.++++|.++|++
T Consensus         1 L~~Gd~vl~v~gP~G~~f~~~------~~~~~llIaGG~GItPl~sm~~~l~~~~--~~v~l~-g~r~~~d~~~~~el~~   71 (158)
T 3lrx_A            1 MKEGDSLLNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEIG--NDVTTL-HVTFEPMVILKEELEK   71 (158)
T ss_dssp             -----------CCCCCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHHT--CEEEEE-EECBGGGCCSHHHHHH
T ss_pred             CcCCCEeeEEECCCCCCCccC------CCCeEEEEEccCcHHHHHHHHHHHHhcC--CcEEEE-EeCCHHHhhHHHHHHH
Confidence            578999 69999999977543      4679999999999999999999987543  589999 9999999999999999


Q ss_pred             HHhCCcEEEEEEecC----CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          220 WESSGVKIVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       220 l~~~~i~~~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      |.. ++.+.++++.+    +++|.+.+|++++.+.+.  ..+.....+|+|||+.|++.+.+.|++.|++
T Consensus        72 l~~-~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~--l~~~~~~~vy~CGP~~mm~~v~~~l~~~Gv~  138 (158)
T 3lrx_A           72 AVT-RHIVEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGVP  138 (158)
T ss_dssp             HSS-EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH--HHHSCCSEEEEESCHHHHHHHHHHHGGGTCC
T ss_pred             HHh-ceEEEEeeccccccCCCCCCCCcccccHHHHHh--hccCCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence            864 33333333332    234556788998866542  2222456899999999999999999999998

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.90  E-value=1.1e-24  Score=213.93  Aligned_cols=187  Identities=21%  Similarity=0.316  Sum_probs=143.6

Q ss_pred             CCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe-------------CCcchHhhhcCCC------------
Q 022710           89 TRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKK------------  143 (293)
Q Consensus        89 ~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-------------~G~~s~~L~~l~~------------  143 (293)
                      ..|+||+...+|. ..+|+|||+|+|..  .++.++|+|+.+             .|..|+||+++++            
T Consensus       414 ~~p~~~l~~~lp~-l~~R~YSIsSsp~~--~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~  490 (682)
T 2bpo_A          414 TVPMQFLVESVPQ-MTPRYYSISSSSLS--EKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL  490 (682)
T ss_dssp             TSCHHHHHHHSCB-CCCEEEEBCSCTTT--CTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred             CCCHHHHHHhCcc-cccccccccCCccc--CCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence            3688888777764 57899999999863  148899987542             3789999998776            


Q ss_pred             CCEEEEEeecCCCc------ccc---CCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC----------CCCcEEEEEc
Q 022710          144 GDVVEISQVMGRGF------AVD---RIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVRLYYG  204 (293)
Q Consensus       144 Gd~v~v~gP~G~~f------~l~---~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~----------~~~~v~l~~~  204 (293)
                      |+++.+.||+|.+.      .+.   ...|.+...+++|||+||||||++++++++....          ...++.|||+
T Consensus       491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG  570 (682)
T 2bpo_A          491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYG  570 (682)
T ss_dssp             CCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEE
T ss_pred             ccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEe
Confidence            99999999999830      111   0123344689999999999999999999986432          2478999999


Q ss_pred             cCCccccccHHHHHHHHh---CCcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCC-hHHHHHHH
Q 022710          205 ARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQ-KQMAEEVT  276 (293)
Q Consensus       205 ~r~~~~~~~~~~l~~l~~---~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp-~~~~~~~~  276 (293)
                      +|+.++++|++||++|+.   .++++++++|++++   +.++|+++.+.+...    .. ..+..+|+||| +.|++++.
T Consensus       571 ~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l-~~~~~vYvCGpa~~M~~~V~  646 (682)
T 2bpo_A          571 SRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMI-NNGAFIYVCGDAKGMAKGVS  646 (682)
T ss_dssp             ESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHH-TTTCEEEEEECSTTHHHHHH
T ss_pred             cCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHH-hCCcEEEEeCCchHhHHHHH
Confidence            999999999999999943   25789999998543   357899987765321    12 25688999999 79999999


Q ss_pred             HHHHHc
Q 022710          277 SIVLAE  282 (293)
Q Consensus       277 ~~L~~~  282 (293)
                      ++|.+.
T Consensus       647 ~~L~~i  652 (682)
T 2bpo_A          647 TALVGI  652 (682)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888653

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.89  E-value=1e-22  Score=190.56  Aligned_cols=168  Identities=18%  Similarity=0.367  Sum_probs=132.5

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCC------EEEEEeecCCCccccCCCCCC
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGD------VVEISQVMGRGFAVDRIQPPD  166 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd------~v~v~gP~G~~f~l~~~~p~~  166 (293)
                      ..+|+|||+|+|..  +++.++|+|+.+          .|..|+||+++.+|+      .|.+.+|.|. |.+..    +
T Consensus       232 l~pR~YSIsSsp~~--~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~-F~lp~----~  304 (458)
T 3qfs_A          232 LQARYYSIASSSKV--HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----K  304 (458)
T ss_dssp             CCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCS-CCCCS----S
T ss_pred             CcceeEeeccCccc--CCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCC-cccCC----C
Confidence            57899999999852  157899988642          278999999987765      6999999996 87653    3


Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCC
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWS  239 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~---~~~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~  239 (293)
                      ...+++|||+||||||+++++++..   +.+ ...++.|+|++|+. ++++|+++|++|...+  .++++++|+++.   
T Consensus       305 ~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~---  381 (458)
T 3qfs_A          305 ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS---  381 (458)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS---
T ss_pred             CCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCC---
Confidence            4679999999999999999999853   222 45789999999996 7999999999998764  388889888653   


Q ss_pred             ccccccchHHHhhhc----cCCCCCcEEEEeCCh-HHHHHHHHHHHHc
Q 022710          240 GETGYVQAAFSRAKK----IFNPQGTGVVLCGQK-QMAEEVTSIVLAE  282 (293)
Q Consensus       240 ~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~-~~~~~~~~~L~~~  282 (293)
                       .++|+++.+.+...    .. ..+..+|+|||+ .|++++.++|.+.
T Consensus       382 -~k~yVqd~l~~~~~~l~~~l-~~~~~vYvCGp~~~M~~~V~~~L~~i  427 (458)
T 3qfs_A          382 -HKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYDI  427 (458)
T ss_dssp             -SCCCHHHHHHHTHHHHHHHH-HTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             -CcccHhHHHHHhHHHHHHHh-cCCCEEEEECCCHHHHHHHHHHHHHH
Confidence             47899988765321    11 257899999996 7999999888653

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.89  E-value=5.8e-24  Score=169.27  Aligned_cols=128  Identities=13%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcE
Q 022710          147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVK  226 (293)
Q Consensus       147 v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~  226 (293)
                      +++.||+|++|..+      ..+++++||||+||||++++++++.+.+  .+++++ ++|+.++++|+++|++|.. ++.
T Consensus         3 ~~v~GP~G~~~~~~------~~~~~llIaGG~GiaPl~sm~~~l~~~~--~~v~l~-g~R~~~~~~~~~el~~l~~-~~~   72 (142)
T 3lyu_A            3 LNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEIG--NDVTTL-HVTFEPMVILKEELEKAVT-RHI   72 (142)
T ss_dssp             ----CCCSCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHTT--CEEEEE-EEEEGGGCCSHHHHHTTSS-EEE
T ss_pred             eeeeCCCCCCccCC------CCCeEEEEECcCcHHHHHHHHHHHHhcC--CcEEEE-EeCCHHHhhHHHHHHHHHh-heE
Confidence            57899999977553      4689999999999999999999987543  589999 9999999999999998864 344


Q ss_pred             EEEEEecC----CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710          227 IVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS  286 (293)
Q Consensus       227 ~~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~  286 (293)
                      +.++++.+    +++|.+.+|++.+.+.+.  ..+.....+|+|||+.|++.+.+.+++.||+-
T Consensus        73 ~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~--~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~~~  134 (142)
T 3lyu_A           73 VEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGVPM  134 (142)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHHHH--HHSSCCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred             EEEeecccccCCCCCCCCCccchhHHHHHh--cccCCCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence            44444442    234556788888876552  22334568999999999999999999999974

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.88  E-value=5e-22  Score=193.01  Aligned_cols=167  Identities=19%  Similarity=0.389  Sum_probs=130.3

Q ss_pred             ceeeEEecCCCCCCCCCCeEEEEEEE----------eCCcchHhhhcCCC-CC-----EEEEEeecCCCccccCCCCCCC
Q 022710          104 KPTFLAIASPPSFASASGAFEFLVKS----------VAGSTAEVLCGLKK-GD-----VVEISQVMGRGFAVDRIQPPDE  167 (293)
Q Consensus       104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~----------~~G~~s~~L~~l~~-Gd-----~v~v~gP~G~~f~l~~~~p~~~  167 (293)
                      .+|+|||+|+|..  .++.++|+|+.          ..|..|+||+++.+ ||     +|.+.+|.|. |.+..    +.
T Consensus       393 ~pR~YSIsSsp~~--~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~-F~lp~----~~  465 (618)
T 3qe2_A          393 QARYYSIASSSKV--HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----KA  465 (618)
T ss_dssp             CCEEEECCSCTTT--CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCS-CCCCS----ST
T ss_pred             ccceeccccCCcC--CCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCc-ccCCC----CC
Confidence            4799999999853  14788887743          12789999999888 88     9999999996 86653    35


Q ss_pred             CCeEEEEEeCcchhHHHHHHHHhhc---cC-CCCcEEEEEccCCc-cccccHHHHHHHHhCC-c-EEEEEEecCCCCCCc
Q 022710          168 YPTVLIFATGSGISPIRSLIESGFS---SK-ERSDVRLYYGARNL-KRMAYQDKFKEWESSG-V-KIVPVLSQPDGNWSG  240 (293)
Q Consensus       168 ~~~ivlia~GtGIaP~~sll~~~~~---~~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~-i-~~~~~~s~~~~~~~~  240 (293)
                      ..+++|||+||||||+++++++...   .+ ...++.|+|++|+. .+++|+++|++|...+ + ++++++|++++    
T Consensus       466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~----  541 (618)
T 3qe2_A          466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS----  541 (618)
T ss_dssp             TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----
T ss_pred             CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCC----
Confidence            6789999999999999999999763   11 34789999999999 5999999999998753 4 88999998753    


Q ss_pred             cccccchHHHhhhc----cCCCCCcEEEEeCCh-HHHHHHHHHHHHc
Q 022710          241 ETGYVQAAFSRAKK----IFNPQGTGVVLCGQK-QMAEEVTSIVLAE  282 (293)
Q Consensus       241 ~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~-~~~~~~~~~L~~~  282 (293)
                      .++|+++.+.+...    .. ..+..+|+|||+ .|++.+.++|.+.
T Consensus       542 ~k~yVqd~l~~~~~~l~~~l-~~~a~vYvCGp~~~M~~~V~~~L~~i  587 (618)
T 3qe2_A          542 HKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYDI  587 (618)
T ss_dssp             SCCCHHHHHHHTHHHHHHHH-HHTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhHHHHHHHH-hCCcEEEEECCchHHHHHHHHHHHHH
Confidence            37899888765311    11 246799999996 9999999887653

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.86  E-value=6.3e-22  Score=163.75  Aligned_cols=140  Identities=19%  Similarity=0.282  Sum_probs=101.1

Q ss_pred             EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-------CCCCcEEEEEccCCccccc-cHHHHH
Q 022710          147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-------KERSDVRLYYGARNLKRMA-YQDKFK  218 (293)
Q Consensus       147 v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-------~~~~~v~l~~~~r~~~~~~-~~~~l~  218 (293)
                      |.|.||+|. |..+.    ..++++|||||||||||++++++++...       ....+|+|+|++|+.++++ |.++|+
T Consensus         1 v~v~GP~G~-~~~~~----~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~   75 (186)
T 3a1f_A            1 IAVDGPFGT-ASEDV----FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQ   75 (186)
T ss_dssp             CCTTSTTSH-HHHHH----TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHH
T ss_pred             CeEECCCCC-CccCh----hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHH
Confidence            357899998 54431    2678999999999999999999998754       2467899999999999998 999999


Q ss_pred             HHHhC--------CcEEEEEEecCCCCC------------Ccc--------ccccchH--HHhhhccCCCCCcEEEEeCC
Q 022710          219 EWESS--------GVKIVPVLSQPDGNW------------SGE--------TGYVQAA--FSRAKKIFNPQGTGVVLCGQ  268 (293)
Q Consensus       219 ~l~~~--------~i~~~~~~s~~~~~~------------~~~--------~g~v~~~--~~~~~~~~~~~~~~v~vCGp  268 (293)
                      ++...        +++++++++++....            .+.        .|+++..  +..........+..||+|||
T Consensus        76 ~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP  155 (186)
T 3a1f_A           76 LLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP  155 (186)
T ss_dssp             HHHHHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred             HHHHHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence            98752        689999988753210            111        1454432  22111111124688999999


Q ss_pred             hHHHHHHHHHHHHcCCC-ccCeec
Q 022710          269 KQMAEEVTSIVLAEGVS-SEKILK  291 (293)
Q Consensus       269 ~~~~~~~~~~L~~~Gv~-~~~I~~  291 (293)
                      ++|++.+++.|.+.|+. ++.+++
T Consensus       156 ~~m~~~v~~~l~~~g~~~~~~~~~  179 (186)
T 3a1f_A          156 EALAETLSKQSISNSESGPRGVHF  179 (186)
T ss_dssp             HHHHHHHHHHHHHTCCCSTTCCEE
T ss_pred             HHHHHHHHHHHHHhhccCCCCCEE
Confidence            99999999999999985 444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	1e-14
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	3e-14
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	3e-14
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	5e-14
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	8e-14
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	1e-13
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	2e-13
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	5e-12
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	7e-11
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	1e-10
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	3e-10
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	8e-10
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	1e-09
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	1e-09
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	7e-09
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	1e-07
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	1e-07
d1tvca1	109	b.43.4.2 (A:2-110) Methane monooxygenase component	4e-04
d1krha1	100	b.43.4.2 (A:106-205) Benzoate dioxygenase reductas	4e-04
d1gvha2	107	b.43.4.2 (A:147-253) Flavohemoglobin, central doma	6e-04
d1ep3b1	101	b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B,	0.004

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 67.3 bits (163), Expect = 1e-14
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 165 PDEYPTVLIFATGSGISPIRSLIESGFSS--KERSDVRLYYGARNLKRMAYQDKFKEWES 222
                 + +   GSGI+P+  +I++      ++ +++ L Y  R    +  +D+   W +
Sbjct: 9   QRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAA 68

Query: 223 S------GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVT 276
                     ++  + +P+  W    G+V  A  R         T  + CG   M +   
Sbjct: 69  EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQFAI 128

Query: 277 SIVLAE-GVSSEKILKNF 293
           S  L +           F
Sbjct: 129 SPNLEKMKYDMANSFVVF 146

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 169 PTVLIFATGSGISPIRSLIES-----GFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS 223
             ++I ATG+G++P R  +         + +      L+ G  N   + Y ++F  +   
Sbjct: 5   THIMI-ATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQ 63

Query: 224 G---VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN---PQGTGVVLCGQKQMAEEVT- 276
                +    LS+   N SG   YVQ                G  +  CG K M   +  
Sbjct: 64  YPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQD 123

Query: 277 ---SIVLAEGVSSEKILKN 292
               +    G S ++ L  
Sbjct: 124 TLKKVAERRGESWDQKLAQ 142

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIES-----GFSSKERSDVRLYYGARNLKRMAYQDKFK 218
           P D   T+++  TG+GI+P RS +           K      L+ G      + Y+++F+
Sbjct: 4   PKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFE 63

Query: 219 EWESSGV---KIVPVLSQPDGNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
           + +       ++   +S+   N  GE  Y+Q   ++      ++     T V +CG K M
Sbjct: 64  KMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGM 123

Query: 272 AEEV----TSIVLAEGVSSEKILKN 292
            + +     S+  AEG+   +  + 
Sbjct: 124 EKGIDDIMVSLAAAEGIDWIEYKRQ 148

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 5e-14
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 162 IQPPDEYPT-------VLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAY 213
           I+P  +          V + A G+GI+P+  +I +     +  +   L +  +  K +  
Sbjct: 5   IRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILL 64

Query: 214 QDKFKEWE---SSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQ 270
           + + +E     S+  K+   L +    W    G+V     R       +   V++CG   
Sbjct: 65  RPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPP 124

Query: 271 MAEEVTSIVLAE-GVSSEKILK 291
           M +      L   G  +E+   
Sbjct: 125 MIQYACLPNLDHVGHPTERCFV 146

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 65.3 bits (158), Expect = 8e-14
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 165 PDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSG 224
            D+ P  LI + G G +P+ +++++   +   + V  ++ A N    A+ D+ KE   S 
Sbjct: 4   ADDTPVTLI-SAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSL 62

Query: 225 --VKIVPVLSQPDGNWSGETGYVQAAF---SRAKKIFNPQGTGVVLCGQKQMAEEVTSIV 279
                     QP      +  +        S+ +  F+       LCG     +     +
Sbjct: 63  PRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQL 122

Query: 280 LAEGVSSEKI 289
           +  GV  E I
Sbjct: 123 VDLGVKQENI 132

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 65.4 bits (158), Expect = 1e-13
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIE---------SGFSSKERSDVRLYYGARNLKRMAYQ 214
           P D    V++ A G+GI+P+R+ +          +    + +    L +G      + Y+
Sbjct: 2   PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYK 61

Query: 215 DKFKEWESSG---VKIVPVLSQPDGNWSGETGYVQ----AAFSRAKKIFNPQGTGVVLCG 267
           ++ +E +       ++   +S+   N  G   Y+Q        +  ++   Q T   +CG
Sbjct: 62  EELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICG 121

Query: 268 QKQMAEEVTSIVLAEGVSSEKILKNF 293
              M E + + + A          ++
Sbjct: 122 PPPMEEGIDAALSAAAAKEGVTWSDY 147

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIV 228
           +++ A G+G S  RS++ +  +     D+ +Y+G R  + +    + +    +  G+++V
Sbjct: 8   MILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVV 67

Query: 229 PVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAE-GVSSE 287
           PV+ QP+  W G TG V  A    +         + + G+ +MA+    +  +E     +
Sbjct: 68  PVVEQPEAGWRGRTGTVLTAV--LQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNARED 125

Query: 288 KI 289
           ++
Sbjct: 126 RL 127

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 60.3 bits (145), Expect = 5e-12
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVK 226
           P VLI + G G++P+ S+++          V   +GARN    A +D+ +E       + 
Sbjct: 7   PIVLI-SGGVGLTPMVSMLKV-ALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLD 64

Query: 227 IVPVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQKQMAEEVTSIVLAEG 283
           +     QP         Y        K+I            +CG           +   G
Sbjct: 65  LFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKNLG 124

Query: 284 VSSEKI 289
           +   +I
Sbjct: 125 IHEARI 130

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 57.7 bits (138), Expect = 7e-11
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 165 PDEYPT--VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE- 221
            D  P   + + +TG+G++P  SLI+     +    V L +G R +  +AYQ    E   
Sbjct: 2   SDLLPGKHLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHLP 61

Query: 222 ---------SSGVKIVPVLSQPDGNWSGETGYVQAA----FSRAKKIFNPQGTGVVLCGQ 268
                       +   P +++   +  G    +  +            NPQ    ++CG 
Sbjct: 62  QSEYFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGS 121

Query: 269 KQMAEEVTSIVLAEGVSSE 287
             M +E   ++   G+   
Sbjct: 122 PSMLDESCEVLDGFGLKIS 140

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 1/119 (0%)

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPV 230
           VL+ A G+GI+P  S+++          VRL +G      +   ++    +         
Sbjct: 8   VLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYR 67

Query: 231 LSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289
                     E               N     V LCG   M E V S +  +G+     
Sbjct: 68  TVVAHAESQHERKG-YVTGHIEYDWLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANF 125

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 3/129 (2%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWES 222
           P +    V++   G+GI+P R+ ++   +      +   +      +   YQ +++ +  
Sbjct: 2   PANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVK 61

Query: 223 SGV-KIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQ-KQMAEEVTSIVL 280
            GV   + +    D                    +   G  + +CG   +MA++V   +L
Sbjct: 62  EGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALL 121

Query: 281 AEGVSSEKI 289
                   +
Sbjct: 122 EVIAEFGGM 130

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 8e-10
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 14/138 (10%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD------VRLYYGARNLKRMAYQDKF 217
           P +     ++   G+GI+P RS  +      +         V ++   ++     Y+++ 
Sbjct: 5   PRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREET 64

Query: 218 KEWESSG--VKIVPVLSQPDGNWSGET--GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
            + ++ G   ++    S+              +       +    QG  + +CG   MA 
Sbjct: 65  LQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAA 124

Query: 274 EV----TSIVLAEGVSSE 287
           +V      I+  +G  SE
Sbjct: 125 DVLKAIQRIMTQQGKLSE 142

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERS----DVRLYYGARNLKR-MAYQDKFK 218
           P      V++   G+GI+P    I+     +E+     +  LYYG R       Y+++  
Sbjct: 3   PFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELA 62

Query: 219 EWESSGV--KIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVT 276
            +   G   ++    S+   +       ++       K+ +  G  + + G  +   +  
Sbjct: 63  RFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDV 122

Query: 277 SIVLAEGVSSE 287
                + V+  
Sbjct: 123 QNTFYDIVAEF 133

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 53.5 bits (127), Expect = 1e-09
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVK 226
           P   + A G+G++P+ S++         ++ R+Y+G      + Y D+ K        + 
Sbjct: 10  PRYFV-AGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLT 68

Query: 227 IVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS 286
           +   +  P G+W GE G    A  R     +     + LCG   M +    +V + G+  
Sbjct: 69  VKACVWHPSGDWEGEQGSPIDAL-REDLESSDANPDIYLCGPPGMIDAACELVRSRGIPG 127

Query: 287 EKI 289
           E++
Sbjct: 128 EQV 130

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 51.1 bits (121), Expect = 7e-09
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 14/126 (11%)

Query: 165 PDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSG 224
                + ++ A G GI+P+ S+      ++     RLYY  R+ +  A+ D+    E   
Sbjct: 5   DKRAKSFILVAGGIGITPMLSMARQ-LRAEGLRSFRLYYLTRDPEGTAFFDELTSDEWRS 63

Query: 225 -VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEG 283
            VKI      P   +   + + ++               V  CG + + + V    +   
Sbjct: 64  DVKIHHDHGDPTKAFDFWSVFEKS----------KPAQHVYCCGPQALMDTVRD--MTGH 111

Query: 284 VSSEKI 289
             S  +
Sbjct: 112 WPSGTV 117

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 164 PPDEYPT---VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW 220
           P  E  +   +LI   G G+ P+  L +     K    + +  G  +      +++F   
Sbjct: 1   PVAEVTSTDKILIIGGGIGVPPLYELAKQ--LEKTGCQMTILLGFASENVKILENEFSNL 58

Query: 221 ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEE 274
           ++     V +    D    G  G+V    +      +   T       K +A++
Sbjct: 59  KN-----VTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKK 107

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 166 DEYP---TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN----LKRMAYQDKFK 218
           DE P   T+ + ATG+ I P  S++  G       ++ L + AR           Q+  K
Sbjct: 1   DEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK 60

Query: 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI----FNPQGTGVVLCGQKQMAEE 274
            +E        V  +                   +       N + + V+LCG  QM  +
Sbjct: 61  RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRD 120

Query: 275 VTSIVLAEGVSSE 287
              ++      ++
Sbjct: 121 TQQLLKETRQMTK 133

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 109

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 11/97 (11%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHT-RAGQYLQLRVVDVGKPTFLAIASPPSFASA 119
           +  ++  + +     +                GQ++ L +         + A+ P+    
Sbjct: 15  VVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNPEG- 73

Query: 120 SGAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMG 154
               EFL++ +     +  +    + G V+ +   +G
Sbjct: 74  --RLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLG 108

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 100

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           LA +   ++S     I + D       H  AGQY+ + +    +    + +S P      
Sbjct: 8   LARVENLSDSTITFDIQLDDGQPDI--HFLAGQYVNVTLPGTTETRSYSFSSQPGN---- 61

Query: 121 GAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGF 157
               F+V++V     +  +    K GD +  +   G  +
Sbjct: 62  RLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFY 100

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} Length = 107

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 56  WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPS 115
                +   +P +  +    ++  D   +A    R GQYL + +   G P         +
Sbjct: 6   TRDFRIVAKTPRSALITSFELEPVDGGAVAEY--RPGQYLGVWLKPEGFPHQEIRQYSLT 63

Query: 116 FASASGAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGF 157
                  +   VK   G   +  +      GDVV++    G  F
Sbjct: 64  RKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFF 107

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 101

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 68  AESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLV 127
           A ++F + +       +       GQ+L L V +        I+       A        
Sbjct: 16  AYNIFEMVLK---GTLVDEMD-LPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYR 71

Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGF 157
                +    L  L+ G  V++   +G GF
Sbjct: 72  IGDETTGTYKLSKLESGAKVDVMGPLGNGF 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.94
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.93
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.92
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.92
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.89
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.88
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.88
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.86
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.84
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.83
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.82
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.81
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.8
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.8
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.79
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	99.79
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	99.77
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.76
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.75
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.75
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.75
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.74
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.74
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.74
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.72
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.72
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.72
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.69
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.64
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.64
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.41
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	96.3
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	96.05
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	92.46

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.94  E-value=3.8e-27  Score=185.71  Aligned_cols=126  Identities=21%  Similarity=0.449  Sum_probs=113.7

Q ss_pred             CCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHh--CCcEEEEEEecCCCCCCcccc
Q 022710          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETG  243 (293)
Q Consensus       166 ~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g  243 (293)
                      +..+++|||||||||||++|+++++.+.+...+|+|+|++|+.++++|+++|++|+.  .+++++.+++++++.|.+..|
T Consensus         6 ~~~~p~vliagGtGItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g   85 (141)
T d1tvca2           6 RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQG   85 (141)
T ss_dssp             CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSSTTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSS
T ss_pred             CCCCcEEEEECchhHHHHHHHHHHHHHcCCCCceEEEeecccchhhhhHHHHHHHHhhccccccceeecccccCcCCccc
Confidence            567789999999999999999999988777789999999999999999999999975  489999999999999999999


Q ss_pred             ccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          244 YVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++.+.+.+.. .....+..+|+|||++|++.+.+.|.+.|+++++||+|
T Consensus        86 ~~~~~~~~~~-~~~~~~~~vyiCGp~~m~~~v~~~l~~~Gv~~~~i~~E  133 (141)
T d1tvca2          86 SPIDALREDL-ESSDANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFE  133 (141)
T ss_dssp             SSSHHHHHHH-HHSSSSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEEC
T ss_pred             hhHHHHHHhc-ccccccceeeccCCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence            9998876642 23346688999999999999999999999999999987

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.93  E-value=2.6e-26  Score=179.05  Aligned_cols=123  Identities=22%  Similarity=0.340  Sum_probs=107.8

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCCCccccc
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY  244 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~  244 (293)
                      ..+++|||||||||||++|+++++...+...+++|+|++|+.++++|.++|++|+.+  ++++++++++++ .+.+..|+
T Consensus         4 ~~rplv~IAgG~GItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~-~~~~~~g~   82 (133)
T d1krha2           4 VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAE-SQHERKGY   82 (133)
T ss_dssp             CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHHHHHCTTEEEEEEETTCC-SSSSEESC
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHHHHhCCceeeeeeeeccc-ccccccch
Confidence            567899999999999999999999887777899999999999999999999999764  789988888864 45677888


Q ss_pred             cchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       245 v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      +++.+.++  ..+..+..+|+|||++|++++.+.|.+.|+++++||+|
T Consensus        83 v~~~i~~~--~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E  128 (133)
T d1krha2          83 VTGHIEYD--WLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFE  128 (133)
T ss_dssp             SGGGCCGG--GGGGGCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEE
T ss_pred             hHHHHHHh--hcccccceEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence            88776553  33456788999999999999999999999999999986

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=4.6e-25  Score=172.17  Aligned_cols=125  Identities=22%  Similarity=0.449  Sum_probs=111.6

Q ss_pred             CCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCCCcccc
Q 022710          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETG  243 (293)
Q Consensus       166 ~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g  243 (293)
                      +..+++|||||||||||++|+++++++.+...+|.|+|++|+.++++|.+++.+|...  ++.+++..+.+.+.|.+..|
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g   82 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTG   82 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTHHHHHHHHHHCTTEEEEEEESSCCTTCCSEES
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHcccccceeEEEecccHhHHHHHHHHHHHHHhcCccceeeeecccCcccccccC
Confidence            4678999999999999999999999887778899999999999999999999999764  67777788888888889999


Q ss_pred             ccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH-HHcCCCccCeecc
Q 022710          244 YVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV-LAEGVSSEKILKN  292 (293)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L-~~~Gv~~~~I~~~  292 (293)
                      ++++.+.+.  ..+..+..+|+|||+.|++.+.+.| ++.|+++++||++
T Consensus        83 ~~~~~~~~~--~~~~~~~~~yvCGp~~m~~~~~~~L~~~~G~~~~~i~~E  130 (135)
T d1qfja2          83 TVLTAVLQD--HGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGD  130 (135)
T ss_dssp             CHHHHHHHH--CSCCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECT
T ss_pred             chHHHHHHh--ccCcccCceEeeCCHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence            999888773  4566788999999999999999987 6799999999986

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-25  Score=174.45  Aligned_cols=125  Identities=18%  Similarity=0.306  Sum_probs=107.7

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccc
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGET  242 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~  242 (293)
                      ..++++||||||||||++|++++++.+ ....+++|+|++|+.++++|+++|++|..+   +++++...+++...+.+..
T Consensus        17 ~~k~i~lIagGtGItP~~s~l~~~l~~~~~~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~   96 (147)
T d1umka2          17 TVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQ   96 (147)
T ss_dssp             ECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEE
T ss_pred             cCCeEEEEECCeecchHHHHHHHHHhcCCCCceEEEEEEeCccccchhHHHHhhhhhhcCcceEEEEEecccccCcccce
Confidence            578999999999999999999998765 456789999999999999999999999753   7888888899888888999


Q ss_pred             cccchHHHhhhccCCCCCcEEEEeCChHHHHH-HHHHHHHcCCCccCeec
Q 022710          243 GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEE-VTSIVLAEGVSSEKILK  291 (293)
Q Consensus       243 g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~-~~~~L~~~Gv~~~~I~~  291 (293)
                      |++++.+.++.......++.+|+|||++|++. +++.|++.|+++++||+
T Consensus        97 g~~~~~~l~~~~~~~~~~~~vyiCGP~~m~~~~~~~~L~~~G~~~e~i~~  146 (147)
T d1umka2          97 GFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV  146 (147)
T ss_dssp             SSCCHHHHHHHSCCGGGCCEEEEESCHHHHHHTTHHHHHHHTCCGGGEEE
T ss_pred             eehHHHHHHHhcCCCcCCcEEEEeCCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence            99988766543333346788999999999986 68899999999999985

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.5e-23  Score=161.29  Aligned_cols=124  Identities=19%  Similarity=0.256  Sum_probs=102.5

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCC-----C
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----S  239 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~-----~  239 (293)
                      +.+++|||||||||||++|++++++..+...++.++|++|+.++++|.+++.++..+  +++++.+++++.+..     .
T Consensus         5 ~d~plv~IagGtGiaP~~s~l~~l~~~~~~~~i~l~~~~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
T d1gvha3           5 DDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQF   84 (143)
T ss_dssp             TTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCTTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCC
T ss_pred             CCCCEEEEEchhhHHHHHHHHHHHHHcCCCceEEEEeecCCHHHHHHHHHHHHHHHhCCceEEEEEEeccCcccccccce
Confidence            567899999999999999999999887778899999999999999999999998775  788888888765432     1


Q ss_pred             ccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          240 GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       240 ~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ...+++......  ......+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus        85 ~~~~~~~~~~l~--~~~~~~~~~~~iCGp~~m~~~v~~~L~~~G~~~~~i~~E  135 (143)
T d1gvha3          85 DSEGLMDLSKLE--GAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYE  135 (143)
T ss_dssp             SEESSCCGGGSS--SCCCCTTCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             eeeccccHHHHH--hcccccCcEEEEeCcHHHHHHHHHHHHHcCCCHHHEEEe
Confidence            123334333222  234556789999999999999999999999999999986

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.88  E-value=1e-22  Score=160.27  Aligned_cols=137  Identities=20%  Similarity=0.400  Sum_probs=104.6

Q ss_pred             CCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC--CCCcEEEEEccCCccccccHHHHHHHHhC--Cc-EEE
Q 022710          154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK--ERSDVRLYYGARNLKRMAYQDKFKEWESS--GV-KIV  228 (293)
Q Consensus       154 G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~--~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i-~~~  228 (293)
                      |+ |.++..  +.+.+++|||||||||||++|+++++++.+  ...++.|+|++|+.+++++.+++..+...  +. .+.
T Consensus         1 G~-f~l~~~--~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   77 (146)
T d2cnda2           1 GS-FVINGK--QRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVW   77 (146)
T ss_dssp             SC-EEETTE--EECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEE
T ss_pred             Ce-EEeCCC--CCCCCEEEEEeceEEHhHHHHHHHHHHHhCCccCceEEEEEeecccccchhHHHHhhHHHhCCCceeEE
Confidence            45 555421  135689999999999999999999987543  45789999999999999999999988774  33 333


Q ss_pred             EEEec---CCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHH-HHHHHHHcCCCccCeeccC
Q 022710          229 PVLSQ---PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEE-VTSIVLAEGVSSEKILKNF  293 (293)
Q Consensus       229 ~~~s~---~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~-~~~~L~~~Gv~~~~I~~~~  293 (293)
                      .+...   +.+.|.+..|++.+...+........++.+|+|||++|++. +++.|++.|+++++|++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~~m~~~av~~~L~~~G~~~~~i~~~f  146 (146)
T d2cnda2          78 YVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQFAISPNLEKMKYDMANSFVVF  146 (146)
T ss_dssp             EEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHHHHTTTHHHHHTTTCCHHHHEEEC
T ss_pred             EeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECCHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence            33322   23346677888887766543333445688999999999996 7899999999999999877

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.88  E-value=1.9e-22  Score=158.30  Aligned_cols=124  Identities=18%  Similarity=0.287  Sum_probs=99.5

Q ss_pred             CCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCCCcc--
Q 022710          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGE--  241 (293)
Q Consensus       166 ~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~--  241 (293)
                      +..+++|||||||||||++|++++++... ..+++|+|++|+.++++|.+++.++...  +++++.+++++.+.+...  
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~-~~~i~li~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP-PRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRD   81 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS-CCCEEEEEEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTT
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC-CCcEEEEeeccChhhhhhHHHHHHHHHhCCCeEEEEEEcccCCccccccc
Confidence            36778999999999999999999987544 5789999999999999999999998764  889999998876543221  


Q ss_pred             ---ccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          242 ---TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       242 ---~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                         .++.......  ......+..+|+|||++|++.+.+.|.+.|+++++||++
T Consensus        82 ~~~~~~~~~~~~~--~~~~~~~~~vyiCGp~~m~~~v~~~L~~~G~~~~~i~~E  133 (142)
T d1cqxa3          82 YDYPGLVDVKQIE--KSILLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYE  133 (142)
T ss_dssp             BSEESSCCGGGSH--HHHCCTTCEEEEESSHHHHHHHHHHHHHTTCCGGGEEEC
T ss_pred             ccchhhhHHHHHH--hhcccCCceEEEECChhHHHHHHHHHHHcCCCHHHEEEE
Confidence               2222222222  123456788999999999999999999999999999987

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.5e-21  Score=152.91  Aligned_cols=126  Identities=20%  Similarity=0.308  Sum_probs=96.1

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCCCccccc
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY  244 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~  244 (293)
                      +.+++|||||||||||++||++++...+...++.|+|++|+.++++|.++++++..+  ++..+.++....+.+....++
T Consensus         5 ~~k~lvlIa~GtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (148)
T d1fdra2           5 HCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGR   84 (148)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTEEESC
T ss_pred             CCCEEEEEEcCeEHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHhhhHHHhccccccccccccCcccccccccc
Confidence            567999999999999999999999877788999999999999999999999988774  555555555555555444444


Q ss_pred             cchHHH-----hhh-ccCCCCCcEEEEeCChHHHHHHHHHHHH-cCCCcc------Ceecc
Q 022710          245 VQAAFS-----RAK-KIFNPQGTGVVLCGQKQMAEEVTSIVLA-EGVSSE------KILKN  292 (293)
Q Consensus       245 v~~~~~-----~~~-~~~~~~~~~v~vCGp~~~~~~~~~~L~~-~Gv~~~------~I~~~  292 (293)
                      ......     +.. ...++.++.||+|||+.|++.+.+.|.+ .|+++.      +|+++
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~L~e~~g~~e~~~~~~g~i~~E  145 (148)
T d1fdra2          85 IPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAE  145 (148)
T ss_dssp             HHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHHHHCCCBCBTTBCCSEEEE
T ss_pred             ccchHHHHHHHHhhccccccccceEEEECCHHHHHHHHHHHHHhcCCCccCCCCCCeEEEE
Confidence            433222     111 1234567789999999999999999975 587754      56654

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.84  E-value=4.2e-21  Score=146.24  Aligned_cols=113  Identities=21%  Similarity=0.268  Sum_probs=86.6

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC-CcEEEEEEecCCCCCCcccccc
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS-GVKIVPVLSQPDGNWSGETGYV  245 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~i~~~~~~s~~~~~~~~~~g~v  245 (293)
                      ..+++|||||||||||++|+++++.... ..++.++|++|+.++++|.++++++... ++.++...+...     .....
T Consensus         7 ~~~~~v~IagGtGiaP~~s~~~~l~~~~-~~~~~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~   80 (120)
T d2piaa2           7 RAKSFILVAGGIGITPMLSMARQLRAEG-LRSFRLYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHGDPT-----KAFDF   80 (120)
T ss_dssp             TCSEEEEEEEGGGHHHHHHHHHHHHHHC-SSEEEEEEEESCGGGCTTHHHHHSTTTTTTEEEEECTTCTT-----SCCCH
T ss_pred             CCCCEEEEEecccHHHHHHHHHHHHHhc-CCCeEEEEeeCCHHHhhhhHHHHHHhhCCCeEEeeecCCCc-----ccccH
Confidence            6789999999999999999999987544 4689999999999999999999998764 444433322221     11222


Q ss_pred             chHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          246 QAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ...+     .....+..+|+|||++|++.+++.|  .|++.++||++
T Consensus        81 ~~~~-----~~~~~~~~~y~CGp~~mi~~v~~~~--~~~~~~~ih~E  120 (120)
T d2piaa2          81 WSVF-----EKSKPAQHVYCCGPQALMDTVRDMT--GHWPSGTVHFE  120 (120)
T ss_dssp             HHHH-----SSCCTTEEEEEESCHHHHHHHHHHT--TTSCTTCEEEE
T ss_pred             HHHh-----ccCCCcCEEEEeCCHHHHHHHHHHH--cCCCHHHeecC
Confidence            2221     2234678999999999999999987  48999999985

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.83  E-value=5.8e-21  Score=152.62  Aligned_cols=125  Identities=23%  Similarity=0.440  Sum_probs=98.5

Q ss_pred             CCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecC
Q 022710          163 QPPDEYPTVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQP  234 (293)
Q Consensus       163 ~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~  234 (293)
                      .|.+..+++||||+||||||++|+|++++..     ....++.|+|++|+.++++|.+++.++...   .+.+.+..+++
T Consensus         3 LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~s~~   82 (160)
T d1fnda2           3 MPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSRE   82 (160)
T ss_dssp             CBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTT
T ss_pred             CCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCceeEEEEEccc
Confidence            4556788999999999999999999998743     234789999999999999999999998775   35667777777


Q ss_pred             CCCCCccccccchHHHhhh----ccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710          235 DGNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE  287 (293)
Q Consensus       235 ~~~~~~~~g~v~~~~~~~~----~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~  287 (293)
                      ...+.+.+++++.......    ......++.+|+|||++|++.+.+.|.+.|+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~l~~~~~~~g  139 (160)
T d1fnda2          83 QTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEG  139 (160)
T ss_dssp             CBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEECHHHHHHHHHHHHHHHHTTT
T ss_pred             hhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence            7777777777766544321    1234567889999999999999999988765543

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.82  E-value=1.6e-20  Score=150.14  Aligned_cols=129  Identities=20%  Similarity=0.380  Sum_probs=99.9

Q ss_pred             CCCCCCeEEEEEeCcchhHHHHHHHHhhcc---------CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEE
Q 022710          164 PPDEYPTVLIFATGSGISPIRSLIESGFSS---------KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVL  231 (293)
Q Consensus       164 p~~~~~~ivlia~GtGIaP~~sll~~~~~~---------~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~  231 (293)
                      |.+..+++|||||||||||++|+|++++..         ....++.|+|++|+.++++|.+++.++...   ...+++..
T Consensus         2 P~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~~~~~~~   81 (162)
T d2bmwa2           2 PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAI   81 (162)
T ss_dssp             CSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEE
T ss_pred             CcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            456678999999999999999999998642         234689999999999999999999987764   34666666


Q ss_pred             ecCCCCCCccccccchHHHhh----hccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710          232 SQPDGNWSGETGYVQAAFSRA----KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN  292 (293)
Q Consensus       232 s~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~  292 (293)
                      ++....+.+..++......+.    .......++.+|+|||++|++++.+.|.+.|++++.++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~  146 (162)
T d2bmwa2          82 SREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSD  146 (162)
T ss_dssp             TTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred             ecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECCHHHHHHHHHHHHHhhcccCccHHH
Confidence            776666666666655443321    1123456789999999999999999999999887776543

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.6e-19  Score=132.67  Aligned_cols=95  Identities=21%  Similarity=0.360  Sum_probs=82.1

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      .|.+++|+++++++++++.++++.+      ...|+||||+.|.++..+  ..|+|||+|.|.    ++.++|+||.++ 
T Consensus         2 ~w~~a~V~~v~~~t~~v~~l~~~~p------~~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~----~~~~~~~vk~~~~   71 (99)
T d1fdra1           2 DWVTGKVTKVQNWTDALFSLTVHAP------VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD----NPDLEFYLVTVPD   71 (99)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEECC------CCCCCTTCEEEEEECC---CEEEEEECCSCTT----CSSEEEEEECCTT
T ss_pred             CcEEEEEEEEEEcCCCEEEEEEcCC------CCCCCCCcEEEeccCCCCCcEEEEEccCCCCC----CceeEEEEEEecC
Confidence            5999999999999999999999842      147899999999998654  468999999987    788999999986 


Q ss_pred             CcchHhhhcCCCCCEEEEEeecCCCccc
Q 022710          132 GSTAEVLCGLKKGDVVEISQVMGRGFAV  159 (293)
Q Consensus       132 G~~s~~L~~l~~Gd~v~v~gP~G~~f~l  159 (293)
                      |.+|+||+++++||+|.++||.|.+|.+
T Consensus        72 G~~S~~l~~lk~GD~v~v~gP~~g~F~L   99 (99)
T d1fdra1          72 GKLSPRLAALKPGDEVQVVSEAAGFFVL   99 (99)
T ss_dssp             CSSHHHHHTCCTTCEEEEESSCBCCCSG
T ss_pred             cHHHHHHhhCCCCCEEEECcCCCCEEEC
Confidence            7899999999999999999977766753

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.80  E-value=2.9e-19  Score=131.65  Aligned_cols=94  Identities=23%  Similarity=0.388  Sum_probs=83.8

Q ss_pred             eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (293)
Q Consensus        58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~  136 (293)
                      +++|++++.+++++++++|+.++..  ....|+|||||.|++++.+..|+||+++.|.    ++.+++.||..+ |.+|+
T Consensus         5 ~~~v~~v~~lt~~v~~~~l~~~~~~--~~~~f~pGQ~v~l~i~g~~~~r~ys~~~~~~----~~~~~~~i~~~~~G~~s~   78 (100)
T d1krha1           5 EGTLARVENLSDSTITFDIQLDDGQ--PDIHFLAGQYVNVTLPGTTETRSYSFSSQPG----NRLTGFVVRNVPQGKMSE   78 (100)
T ss_dssp             EEEEEEEEESSSSEEEEEEEECTTC--CCCCCCTTCEEEEECTTSSCEEEEECCSCTT----CSEEEEEEECCTTCHHHH
T ss_pred             EEEEEEEEEcCCCeEEEEEEcCCCC--cCCCCCCCEEEEEEECCcceeEEeeccCCCc----cCceEEEEEEeeCCchhh
Confidence            6899999999999999999987653  2357899999999999888899999999987    788999999886 68999


Q ss_pred             hhh-cCCCCCEEEEEeecCCCc
Q 022710          137 VLC-GLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       137 ~L~-~l~~Gd~v~v~gP~G~~f  157 (293)
                      ||+ ++++||+|.++||+|++|
T Consensus        79 ~l~~~l~~Gd~v~v~gP~G~Ff  100 (100)
T d1krha1          79 YLSVQAKAGDKMSFTGPFGSFY  100 (100)
T ss_dssp             HHHTTCCTTCEEEEEEEECSCS
T ss_pred             hhhccCCCCCEEEEeccccccC
Confidence            997 599999999999999854

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.80  E-value=4.3e-20  Score=147.10  Aligned_cols=122  Identities=21%  Similarity=0.332  Sum_probs=93.9

Q ss_pred             CCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC----------CcEEEEEEecCCCC
Q 022710          168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS----------GVKIVPVLSQPDGN  237 (293)
Q Consensus       168 ~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~----------~i~~~~~~s~~~~~  237 (293)
                      .+++|||||||||||++|+++++...+...++.++|++|+.++.+|.+++..+...          .+.+....+.....
T Consensus         7 ~~~lvlIagGtGIaP~~sil~~~~~~~~~~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (158)
T d1a8pa2           7 GKHLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTRESFH   86 (158)
T ss_dssp             CSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCCS
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHhCCCCceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEeccccccc
Confidence            47999999999999999999998876667899999999999999999999877653          23555555555444


Q ss_pred             CCccc------cccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710          238 WSGET------GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       238 ~~~~~------g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      +.+..      +++.+.+..  ....+.++.+|+|||++|++.+.+.|.+.|+++++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yiCGp~~m~~~v~~~L~~~G~~~~~~~~  144 (158)
T d1a8pa2          87 NQGRLTDLMRSGKLFEDIGL--PPINPQDDRAMICGSPSMLDESCEVLDGFGLKISPRMG  144 (158)
T ss_dssp             SBSCHHHHHHSSHHHHHHTC--CCCCTTTEEEEEEECHHHHHHHHHHHHHTTCCBCSSTT
T ss_pred             ccccccchhccchhhhhhhc--cccCcccceEEEECCHHHHHHHHHHHHHcCCCccCCcC
Confidence            43321      222222222  23445789999999999999999999999999986654

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.79  E-value=7.3e-20  Score=145.24  Aligned_cols=117  Identities=22%  Similarity=0.372  Sum_probs=86.1

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCC
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNW  238 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~  238 (293)
                      ...++||||+||||||++|+|++++..     ....++.|+|++|+..+++|.+++.++..+   .+.+..+.+++.+.+
T Consensus         2 p~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~   81 (154)
T d1jb9a2           2 PNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNR   81 (154)
T ss_dssp             TTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTCC--
T ss_pred             CCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCEEEEEEeccCCcCc
Confidence            357999999999999999999998742     234689999999999999999999998775   345556666666666


Q ss_pred             CccccccchHHHhhh---ccCCCCCcEEEEeCChHHHHHHHHHHHHcC
Q 022710          239 SGETGYVQAAFSRAK---KIFNPQGTGVVLCGQKQMAEEVTSIVLAEG  283 (293)
Q Consensus       239 ~~~~g~v~~~~~~~~---~~~~~~~~~v~vCGp~~~~~~~~~~L~~~G  283 (293)
                      ....++++.......   ......++.+|+|||+.|++++.++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~mm~~v~~~L~~~~  129 (154)
T d1jb9a2          82 SGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVA  129 (154)
T ss_dssp             --CCCCHHHHHHHTHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred             CCcccccchHHHHhHHHhhhcccCCCEEEEECCHHHHHHHHHHHHHHH
Confidence            666666655543311   111135789999999999999988886653

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.3e-19  Score=130.52  Aligned_cols=97  Identities=20%  Similarity=0.278  Sum_probs=83.7

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSV  130 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~~  130 (293)
                      .|++++|++++.+++++++++|+..+...  ...|+||||+.|+++..+    ..++||+++.+.    ++.++|+||..
T Consensus         5 g~~~~~v~~~~~~t~~~~~~~l~~~d~~~--~~~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~----~~~~~i~vk~~   78 (107)
T d1gvha2           5 GTRDFRIVAKTPRSALITSFELEPVDGGA--VAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKRE   78 (107)
T ss_dssp             SEEEEEEEEEEECSSSEEEEEEEETTCCC--CCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC----SSCEEEEEECC
T ss_pred             CCEEEEEEEEEEeCCCeEEEEEEcCCcCc--ccCCCCCCEEEEEeeccccCceEEeeccccCCCC----CCceEEEEEEc
Confidence            58999999999999999999999765432  257899999999998543    458899999887    78899999987


Q ss_pred             C-CcchHhhh-cCCCCCEEEEEeecCCCc
Q 022710          131 A-GSTAEVLC-GLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       131 ~-G~~s~~L~-~l~~Gd~v~v~gP~G~~f  157 (293)
                      + |.+|+||+ +|++||+|.++||+|++|
T Consensus        79 ~~G~~S~~l~~~l~~Gd~v~v~gP~G~Ff  107 (107)
T d1gvha2          79 EGGQVSNWLHNHANVGDVVKLVAPAGDFF  107 (107)
T ss_dssp             TTCHHHHHHHHTCCTTCEEEEEEEECSCC
T ss_pred             CCcchhHHHHhcCCCCCEEEEeCccccCC
Confidence            6 58999997 699999999999999854

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.77  E-value=1.4e-18  Score=130.46  Aligned_cols=97  Identities=18%  Similarity=0.318  Sum_probs=82.9

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC----CceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----GKPTFLAIASPPSFASASGAFEFLVKSV  130 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~----~~~r~ySi~s~p~~~~~~~~~~~~Vk~~  130 (293)
                      .|++++|++++++++++++|+|+.++...  ...|+||||+.|+++..    ...|+|||++.|.    ++.++|.||+.
T Consensus         3 g~r~~~V~~~~~~t~dv~~~~l~~~~~~~--~~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~----~~~~~~~v~~~   76 (111)
T d1cqxa2           3 GWRTFVIREKRPESDVITSFILEPADGGP--VVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKRE   76 (111)
T ss_dssp             SCEEEEEEEEEECSSSEEEEEEEETTCCC--CCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC----SSCEEEEEECC
T ss_pred             CceEEEEEEEEEeCCCcEEEEEEeCCcCc--ccCCCCCCEEEEEeecCCCcceeeeeccccCCcc----CCCeEEEEEEe
Confidence            59999999999999999999999865542  25789999999998743    2478999999986    67899999975


Q ss_pred             C------CcchHhhh-cCCCCCEEEEEeecCCCcc
Q 022710          131 A------GSTAEVLC-GLKKGDVVEISQVMGRGFA  158 (293)
Q Consensus       131 ~------G~~s~~L~-~l~~Gd~v~v~gP~G~~f~  158 (293)
                      .      |.+|+||+ ++++||+|.++||+|+ |.
T Consensus        77 ~~~~~~~G~~S~~l~~~l~~Gd~v~v~gP~G~-F~  110 (111)
T d1cqxa2          77 GGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS-FH  110 (111)
T ss_dssp             CBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS-CS
T ss_pred             cCCCcccchhHHHHHhcCCCCCEEEEEccCeE-eE
Confidence            2      67899998 5999999999999998 64

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.1e-19  Score=141.44  Aligned_cols=127  Identities=15%  Similarity=0.269  Sum_probs=89.9

Q ss_pred             CCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhC--CcEEEEEEecCCCCCCc
Q 022710          164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSG  240 (293)
Q Consensus       164 p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~  240 (293)
                      |.+..+++|||||||||||++|+|+++........+.++|+++. .++.+|.+++..+...  .++++++++++...+..
T Consensus         2 P~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~   81 (153)
T d1ddga2           2 PANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVY   81 (153)
T ss_dssp             CSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSSSSCCC
T ss_pred             CcCCCCCEEEEECchhHHHHHHHHHHHHHhcCCCceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecccCccc
Confidence            45678899999999999999999999887666666777776654 5578999999999876  56888888887654433


Q ss_pred             cccccchHHHhhhccCCCCCcEEEEeCChHH-HHHHHHHHHHcCCCccCeec
Q 022710          241 ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM-AEEVTSIVLAEGVSSEKILK  291 (293)
Q Consensus       241 ~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~-~~~~~~~L~~~Gv~~~~I~~  291 (293)
                      ..+......... ......+..+|+|||+.| ++.+++.|.+.|++..++..
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~  132 (153)
T d1ddga2          82 VQDKLREQGAEL-WRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDT  132 (153)
T ss_dssp             HHHHHHHTHHHH-HHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCH
T ss_pred             ccchHHHHHHHH-HhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCH
Confidence            222221111110 111234678999997765 58999999988887777653

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.75  E-value=2.1e-18  Score=127.26  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=82.5

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCc--eeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVKSVA-  131 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~--~r~ySi~s~p~~~~~~~~~~~~Vk~~~-  131 (293)
                      ....++|++++.+++++++++|+.+..    ...++|||||+|++++.+.  .|+|||++.+.+   ++.++|.+|..+ 
T Consensus         3 ~~~~~~V~~~~~~~~~i~~l~l~~~~~----~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~---~~~i~~~i~~~~~   75 (101)
T d1ep3b1           3 LQEMMTVVSQREVAYNIFEMVLKGTLV----DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDE   75 (101)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEESGGG----GGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCT
T ss_pred             cCeeEEEEEEEEecCCEEEEEEECCCh----hhccCCCceEEEEccCCccEeeccceeeeCCCC---CcEEEEEEeecCc
Confidence            355799999999999999999985432    2468999999999987653  589999998876   899999999876 


Q ss_pred             CcchHhhhcCCCCCEEEEEeecCCCc
Q 022710          132 GSTAEVLCGLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       132 G~~s~~L~~l~~Gd~v~v~gP~G~~f  157 (293)
                      |.+|.||+++++||+|.+.||+|++|
T Consensus        76 g~~t~~l~~l~~Gd~v~v~GP~G~~F  101 (101)
T d1ep3b1          76 TTGTYKLSKLESGAKVDVMGPLGNGF  101 (101)
T ss_dssp             TSHHHHHHTCCTTCEEEEEEEESBCC
T ss_pred             chhhHHHHhCCCCCEEEEecccCCCC
Confidence            47899999999999999999999976

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=3.3e-18  Score=136.61  Aligned_cols=114  Identities=23%  Similarity=0.455  Sum_probs=86.0

Q ss_pred             CCCCCCeEEEEEeCcchhHHHHHHHHhhc----cCCCCcEEEEEccCCcc-ccccHHHHHHHHhC--CcEEEEEEecCCC
Q 022710          164 PPDEYPTVLIFATGSGISPIRSLIESGFS----SKERSDVRLYYGARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDG  236 (293)
Q Consensus       164 p~~~~~~ivlia~GtGIaP~~sll~~~~~----~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~--~i~~~~~~s~~~~  236 (293)
                      |.+...++||||+||||||++|+|++...    .....++.||||+|+.+ +++|+++|+.+...  ..+++.++++++.
T Consensus         3 P~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~   82 (160)
T d1ja1a3           3 PFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQA   82 (160)
T ss_dssp             CSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTSSS
T ss_pred             CcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeecccc
Confidence            45678899999999999999999987532    23446899999999876 69999999999876  4578888888754


Q ss_pred             CCCccccccchHHHhhh----ccCCCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710          237 NWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQK-QMAEEVTSIVLA  281 (293)
Q Consensus       237 ~~~~~~g~v~~~~~~~~----~~~~~~~~~v~vCGp~-~~~~~~~~~L~~  281 (293)
                      .    +.++++.+.+..    ......+..+|+|||+ .|.+.+++.|.+
T Consensus        83 ~----~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~  128 (160)
T d1ja1a3          83 H----KVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYD  128 (160)
T ss_dssp             S----CCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHH
T ss_pred             C----ccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHH
Confidence            2    456666554321    1222457899999975 788888877754

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.75  E-value=1.5e-18  Score=129.83  Aligned_cols=97  Identities=14%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CceeeeEeEeeeCCCCeEEEEEEcCCCccc-cccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710           55 VWTPTPLAEISPAAESLFHVSIDISDAPDI-ASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (293)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G  132 (293)
                      ...+++|++++.+++++++++|+.++.... ....|+||||+.|.+++...+|+|||++.|..   ++.++|+||..+ |
T Consensus         9 ~~~~a~V~~~~~lt~di~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~g~~~~R~ySias~p~~---~~~~~~~i~~~~~G   85 (109)
T d1tvca1           9 GSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP---EGRLEFLIRVLPEG   85 (109)
T ss_dssp             SEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSCSSSEEECCBCCSSS---SCCEEEEECCCTTS
T ss_pred             eeEEEEEEEEEEeCCCeEEEEEECCCcccccccccCCCCcEEEEEECCccccccceeccCCcC---CceeEEEEEEeCCc
Confidence            456899999999999999999998753211 23579999999999998888899999999986   789999999986 6


Q ss_pred             cchHhhh-cCCCCCEEEEEeecC
Q 022710          133 STAEVLC-GLKKGDVVEISQVMG  154 (293)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~v~gP~G  154 (293)
                      .+|+||+ ++++||+|.+.||+|
T Consensus        86 ~~S~~l~~~l~~Gd~v~i~gP~G  108 (109)
T d1tvca1          86 RFSDYLRNDARVGQVLSVKGPLG  108 (109)
T ss_dssp             SSHHHHHHHSSSSSEEEEEEEEC
T ss_pred             hHHHHHHhhCCCCCEEEEeCCcc
Confidence            8999997 599999999999998

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.74  E-value=1e-17  Score=122.85  Aligned_cols=91  Identities=22%  Similarity=0.302  Sum_probs=79.3

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCc--eeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVKSVA-G  132 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~--~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G  132 (293)
                      +...+|+++++++++++.++++.++.     ..|+||||+.|.++..++  .|+|||+|+|.    ++.++++||.++ |
T Consensus         3 ~~~~kV~~v~~~t~~~~~~~l~~~~~-----~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~----~~~~~~~i~~~~~G   73 (99)
T d1a8pa1           3 LNVERVLSVHHWNDTLFSFKTTRNPS-----LRFENGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVQNG   73 (99)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCSSC
T ss_pred             cceEEEEEEEecCCCEEEEEecCCCC-----CccCCCcEEEEeccCCCceeEeeccccCCCC----CCcEEEEEEEeCCC
Confidence            56678999999999999999986432     578999999999986654  59999999997    788999999876 7


Q ss_pred             cchHhhhcCCCCCEEEEE-eecCC
Q 022710          133 STAEVLCGLKKGDVVEIS-QVMGR  155 (293)
Q Consensus       133 ~~s~~L~~l~~Gd~v~v~-gP~G~  155 (293)
                      .+|+||+++++||+|.+. ||+|.
T Consensus        74 ~~S~~L~~l~~Gd~v~v~~gP~G~   97 (99)
T d1a8pa1          74 PLTSRLQHLKEGDELMVSRKPTGT   97 (99)
T ss_dssp             SSHHHHTTCCTTCEEEEESCCBCS
T ss_pred             ChhHHHHhCCCCCEEEECCCCcee
Confidence            899999999999999996 99996

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.74  E-value=8e-18  Score=126.80  Aligned_cols=99  Identities=15%  Similarity=0.143  Sum_probs=85.8

Q ss_pred             ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCc--eeeEEecCCCCCCCCCCeEEEEEEEeC--
Q 022710           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVKSVA--  131 (293)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~--~r~ySi~s~p~~~~~~~~~~~~Vk~~~--  131 (293)
                      +.+++|++++.+++++..++|+.+++..  ...+.||||+.|+++..++  .|.||+++.+.+   .+.++|.||.++  
T Consensus         2 k~~~klv~~~~it~d~~~~~f~~p~~~~--~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~---~~~~~~~ik~~~~~   76 (114)
T d2cnda1           2 RIHCRLVAKKELSRDVRLFRFSLPSPDQ--VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE---IGHFDLLVKVYFKN   76 (114)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECSSTTC--CCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEEECCCSS
T ss_pred             cEEEEEEEEEEcCCCeEEEEEECCCccc--ccCccceEEEEEEeecccceEEeeeccCCCCCC---CCEEEEEEEeccCC
Confidence            5689999999999999999999876543  3678999999999986653  799999999986   889999999752  


Q ss_pred             --------CcchHhhhcCCCCCEEEEEeecCCCcccc
Q 022710          132 --------GSTAEVLCGLKKGDVVEISQVMGRGFAVD  160 (293)
Q Consensus       132 --------G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~  160 (293)
                              |.+|.+|+++++||+|+++||+|+ |.+.
T Consensus        77 ~~~~~~~gG~~s~~l~~l~~Gd~v~i~gP~G~-F~y~  112 (114)
T d2cnda1          77 EHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGH-VEYT  112 (114)
T ss_dssp             CBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS-EECC
T ss_pred             CccccccCchhHHHHhhCCCCCEEEEECCcee-eEEC
Confidence                    678999999999999999999998 7653

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.9e-18  Score=125.45  Aligned_cols=92  Identities=18%  Similarity=0.279  Sum_probs=77.5

Q ss_pred             eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (293)
Q Consensus        57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s  135 (293)
                      ..|+|.+++.+++++++++|+.+++     +.|+||||+.|.+++. ..|+|||+|.|.+   ++.++|.||..+ |.+|
T Consensus         3 l~~~V~~i~~lt~~v~~~~l~~~~~-----~~f~~GQ~v~l~~~~~-~~r~ySias~p~~---~~~l~l~ir~~~~g~~s   73 (97)
T d1qfja1           3 LSCKVTSVEAITDTVYRVRIVPDAA-----FSFRAGQYLMVVMDER-DKRPFSMASTPDE---KGFIELHIGASEINLYA   73 (97)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESSC-----CCCCTTCEEEEESSSS-CEEEEECCSCTTS---TTCEEEEEC------CC
T ss_pred             EEEEEEEEEEcCCCEEEEEEeCCcc-----CccCCCCEEEEEEcCC-CcEEEEEEEcCCC---CcEEEEEEeEccCCchh
Confidence            4799999999999999999997532     5789999999999864 4689999999976   899999999765 6889


Q ss_pred             Hhhh-cCCCCCEEEEEeecCCCc
Q 022710          136 EVLC-GLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       136 ~~L~-~l~~Gd~v~v~gP~G~~f  157 (293)
                      +||. ++++||+|.|.||+|++|
T Consensus        74 ~~l~~~l~~G~~v~v~gP~G~~~   96 (97)
T d1qfja1          74 KAVMDRILKDHQIVVDIPHGEAW   96 (97)
T ss_dssp             HHHHHHHHHHSEEEEEEEECSCC
T ss_pred             HhHhhcCCCCCEEEEeccCCceE
Confidence            9996 599999999999999965

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=5.9e-18  Score=135.78  Aligned_cols=118  Identities=18%  Similarity=0.285  Sum_probs=82.5

Q ss_pred             CCCCCeEEEEEeCcchhHHHHHHHHhhc-----cCCCCcEEEEEccCCc-cccccHHHHHHHHhC--CcEEEEEEecCCC
Q 022710          165 PDEYPTVLIFATGSGISPIRSLIESGFS-----SKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDG  236 (293)
Q Consensus       165 ~~~~~~ivlia~GtGIaP~~sll~~~~~-----~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~i~~~~~~s~~~~  236 (293)
                      .+...++||||+||||||++|+|++...     .....++.++|++++. ++++|.++++.+...  ++++++.++++.+
T Consensus         6 ~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sr~~~   85 (165)
T d1f20a2           6 RNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPD   85 (165)
T ss_dssp             SCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTT
T ss_pred             CCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEEecccc
Confidence            3567789999999999999999988642     2233455666655554 567899999999875  4577777787655


Q ss_pred             CCCccccccchHHHhh-----hccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710          237 NWSGETGYVQAAFSRA-----KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS  285 (293)
Q Consensus       237 ~~~~~~g~v~~~~~~~-----~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~  285 (293)
                      .+.   +++...+...     .......++.+|+|||++|+++++++|++.++.
T Consensus        86 ~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp~~M~~~v~~~L~~i~~~  136 (165)
T d1f20a2          86 RPK---KYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQ  136 (165)
T ss_dssp             SCC---CCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred             CCC---CcccchHHHHHHHHHHhhccCCCcEEEEECCcchHHHHHHHHHHHHHH
Confidence            432   2333322211     011234678999999999999999999876543

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.72  E-value=3.2e-17  Score=121.04  Aligned_cols=94  Identities=15%  Similarity=0.178  Sum_probs=81.1

Q ss_pred             CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G  132 (293)
                      ..|.+++|++++.++++++.|+|+.++...+  ..|+|||||.|.+++. ..|.|||++.|.+   .+.++|+||..+ |
T Consensus         6 ~~~~~~~V~~~~~~t~di~~~~l~~~~g~~l--p~f~pGQ~v~v~~~~~-~~R~YSl~s~p~~---~~~~~i~Vk~~~~g   79 (103)
T d2piaa1           6 DGFLRLKIASKEKIARDIWSFELTDPQGAPL--PPFEAGANLTVAVPNG-SRRTYSLCNDSQE---RNRYVIAVKRDSNG   79 (103)
T ss_dssp             TTCEEEEEEEEEEEETTEEEEEEECTTCCCC--CCCCTTCEEEEECTTS-CEEEEECCSCTTC---CSEEEEEEECCTTS
T ss_pred             CCeEEEEEEEEEEcCCCeEEEEEECCCCCcC--CCCCCCceEEEEEecc-eeEEEEEecCCCC---CCEEEEEEEEECCC
Confidence            4688999999999999999999997655432  3689999999999874 5699999999975   799999999986 4


Q ss_pred             c-chHhhh-cCCCCCEEEEEeec
Q 022710          133 S-TAEVLC-GLKKGDVVEISQVM  153 (293)
Q Consensus       133 ~-~s~~L~-~l~~Gd~v~v~gP~  153 (293)
                      . .|+||+ ++++||+|.++||.
T Consensus        80 ~~~S~~l~~~l~~Gd~v~v~~Pr  102 (103)
T d2piaa1          80 RGGSISFIDDTSEGDAVEVSLPR  102 (103)
T ss_dssp             CSHHHHHHHSCCTTCEEEECCCB
T ss_pred             ccchHHHHhcCCCCCEEEEeCCc
Confidence            4 599997 79999999999984

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-17  Score=125.10  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=87.7

Q ss_pred             cCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCc--eeeEEecCCCCCCCCCCeEEEEEE
Q 022710           51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVK  128 (293)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~--~r~ySi~s~p~~~~~~~~~~~~Vk  128 (293)
                      .++..|.+++|++++.+++++++|+|+.+++.  ....+.||||+.++++..++  .|.||+++.+.+   .+.++|.||
T Consensus         7 ~~P~~~~~~~v~~~~~it~d~~~f~f~~p~~~--~~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~---~g~~~~~vk   81 (124)
T d1umka1           7 ESPDIKYPLRLIDREIISHDTRRFRFALPSPQ--HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD---KGFVDLVIK   81 (124)
T ss_dssp             CCTTCCEEEEEEEEEECSSSEEEEEEECSSTT--CBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC---CSEEEEEEE
T ss_pred             cCCCcCEEEEEEEEEEeCCCeEEEEEEcCCcc--cccccceeeEEEEEecccceeEEEeeccCCcccC---CceEEEEEE
Confidence            46778899999999999999999999987654  33578999999999876553  689999999976   899999999


Q ss_pred             Ee---------CC-cchHhhhcCCCCCEEEEEeecCCCccc
Q 022710          129 SV---------AG-STAEVLCGLKKGDVVEISQVMGRGFAV  159 (293)
Q Consensus       129 ~~---------~G-~~s~~L~~l~~Gd~v~v~gP~G~~f~l  159 (293)
                      ..         +| .+|.+|++|++||+|+|+||+|+ |.+
T Consensus        82 ~~~~~~~~~~~~Gg~~s~~l~~l~~GD~v~v~gP~G~-F~y  121 (124)
T d1umka1          82 VYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGL-LVY  121 (124)
T ss_dssp             CCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS-EEE
T ss_pred             ecccccccccCCCcchHHHHhcCCCCCEEEEECCeee-eEE
Confidence            53         34 67788899999999999999998 754

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.69  E-value=5.7e-17  Score=129.36  Aligned_cols=107  Identities=16%  Similarity=0.230  Sum_probs=85.4

Q ss_pred             CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccc
Q 022710          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQ  246 (293)
Q Consensus       167 ~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~  246 (293)
                      ..++++|||||+||||++++++++.+.+  .+++++|++|+.++++|.++|+++..  ..++...   ++.+.+..|++.
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~~--~~v~l~~g~r~~~~~~~~~el~~~~~--~~~~~~~---~~~~~~~~g~v~   79 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKTG--CQMTILLGFASENVKILENEFSNLKN--VTLKIAT---DDGSYGTKGHVG   79 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHHT--CEEEEEEEESSGGGCCCHHHHHTSTT--EEEEEEE---TTCSSSEESCHH
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhcc--CceEEEEecCCHHHHHHHHHHHHhhC--CCccccc---cCccccccccHH
Confidence            5668999999999999999999986443  68999999999999999999998864  2333332   234556677887


Q ss_pred             hHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710          247 AAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV  284 (293)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv  284 (293)
                      +....    .......+|+|||+.|++.+.+.+++.|.
T Consensus        80 ~~~~~----~~~~~~~vy~CGP~~m~~~v~~~~~~~g~  113 (160)
T d1ep3b2          80 MLMNE----IDFEVDALYTCGAPAMLKAVAKKYDQLER  113 (160)
T ss_dssp             HHHHH----CCSCCSEEEEESCHHHHHHHHHHTTTCSS
T ss_pred             HHHHh----hccccceeeeeccchHHHHHHHHHHhcCC
Confidence            76554    23456789999999999999999998883

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.64  E-value=1.2e-15  Score=117.68  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=81.2

Q ss_pred             CCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCCC-CCC
Q 022710           54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFAS-ASG  121 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~~-~~~  121 (293)
                      +....++|++++.++.     ++++++++..+.    ...|.||||+.|..+..      ...|.|||+|.|.... +.+
T Consensus        10 ~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~----~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~   85 (133)
T d2bmwa1          10 NAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG----NLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK   85 (133)
T ss_dssp             TBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS----CCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred             CCCeEEEEEEEEEccCCCCCceEEEEEEccCCc----cCCccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCcc
Confidence            3445889999998864     599999987653    25799999999999843      2469999999986422 357


Q ss_pred             eEEEEEEEe-----------CCcchHhhhcCCCCCEEEEEeecCCCc
Q 022710          122 AFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGF  157 (293)
Q Consensus       122 ~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f  157 (293)
                      .++++||+.           .|.+|+||+++++||+|.+.||+|++|
T Consensus        86 ~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD~v~v~GP~G~~f  132 (133)
T d2bmwa1          86 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEM  132 (133)
T ss_dssp             EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSS
T ss_pred             EEEEEEEeccccccccCCCCCcEehhhHhhCCCCCEEEEeCCcccee
Confidence            899999975           388999999999999999999999955

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.64  E-value=1.3e-15  Score=117.75  Aligned_cols=97  Identities=19%  Similarity=0.181  Sum_probs=79.3

Q ss_pred             CCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCCC-CCC
Q 022710           54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFAS-ASG  121 (293)
Q Consensus        54 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~~-~~~  121 (293)
                      +....++|++++.++.     ++++|.++..++     ..|+||||+.|.++..      ..+|.|||+|+|.... +.+
T Consensus        17 ~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~~-----~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~   91 (136)
T d1fnda1          17 KTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-----IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAK   91 (136)
T ss_dssp             TBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSC
T ss_pred             CCCeEEEEEeEEEccCCCCCceEEEEecccCCC-----CcccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCc
Confidence            3445789999888864     688999987432     5799999999999743      2469999999997532 357


Q ss_pred             eEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCC
Q 022710          122 AFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGR  155 (293)
Q Consensus       122 ~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~  155 (293)
                      .++++||++          .|.+|+||++|++||+|.++||+|+
T Consensus        92 ~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~V~v~GP~Gk  135 (136)
T d1fnda1          92 SVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK  135 (136)
T ss_dssp             EEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECS
T ss_pred             EEEEEEEEeecccCCCcCCCceEehhhccCCCcCEEEEeCCCCC
Confidence            899999975          3789999999999999999999996

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.41  E-value=1.4e-12  Score=102.45  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=81.9

Q ss_pred             ceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--------CceeeEEecCCCCCCC-CCC
Q 022710           56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--------GKPTFLAIASPPSFAS-ASG  121 (293)
Q Consensus        56 ~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~p~~~~-~~~  121 (293)
                      ...++|++++.++.     .++++.+++.+.     +.|+|||++.|..+..        ..+|.|||+|+|.... +..
T Consensus        28 P~~a~v~~n~~Lt~~~s~k~t~hie~dl~~~-----~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~~~~  102 (157)
T d1jb9a1          28 PFTATIVSVESLVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGR  102 (157)
T ss_dssp             CEEEEEEEEEECSCTTSSSCEEEEEEECTTS-----SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSS
T ss_pred             CeEEEEEeEEEcccCCCCceEEEEEecCCCC-----ccEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCCCCC
Confidence            34788999988874     799999998542     6799999999998743        2579999999996532 246


Q ss_pred             eEEEEEEEe--------------CCcchHhhhcCCCCCEEEEEeecCCCcccc
Q 022710          122 AFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVD  160 (293)
Q Consensus       122 ~~~~~Vk~~--------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~  160 (293)
                      .+.++||..              .|..|.||+++++||+|.|.||+|++|.+.
T Consensus       103 ~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd~V~i~gp~g~~F~lP  155 (157)
T d1jb9a1         103 TGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLP  155 (157)
T ss_dssp             EEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTCEEEEEEEECSTTCCC
T ss_pred             EEEEEEEEeeccccccccCCcccCceeehhhccCCCcCEEEEEecCCCcccCC
Confidence            799999963              378899999999999999999999988664

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.002  Score=53.73  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=36.9

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEE
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEIS  150 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~  150 (293)
                      .++|+|||+|+|..  ..+.++++|..+            .|..|.||+++++||+|.+.
T Consensus       208 L~PR~YSIsSSp~~--~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd~v~v~  265 (270)
T d1f20a1         208 LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCF  265 (270)
T ss_dssp             CCCEEEECCSCTTT--STTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEE
T ss_pred             cccceeEEecCccC--CCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCCEEEEE
Confidence            46899999999963  268899988632            27789999999999998774

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0036  Score=50.46  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=36.6

Q ss_pred             ceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhh-cCCCCCEEEEEe
Q 022710          104 KPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLC-GLKKGDVVEISQ  151 (293)
Q Consensus       104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~-~l~~Gd~v~v~g  151 (293)
                      ++|+|||+|+|..  .++.++++|..+         .|..|+||+ .+++||+|.+.-
T Consensus       159 ~PR~YSIsSSp~~--~p~~i~ltv~vv~~~~~~~~r~GvcS~~L~~~l~~g~~V~v~i  214 (221)
T d1ddga1         159 TPRLYSIASSQAE--VENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFI  214 (221)
T ss_dssp             CCEEEEBCCCTTT--SCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEE
T ss_pred             Cceeeeecccccc--CCCeeeEEEEEEEeeCCCCccceecHHHHHhhCCCCCEEEEEE
Confidence            5799999999853  267899888643         288899998 599999998753

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.46  E-value=0.06  Score=44.55  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=32.1

Q ss_pred             CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCC
Q 022710          103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGD  145 (293)
Q Consensus       103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd  145 (293)
                      .++|+|||+|+|..  ..+.++|+|..+          .|..|.||+++.+|+
T Consensus       212 L~PR~YSISSSp~~--~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~  262 (279)
T d1ja1a1         212 LQARYYAIASSSKV--HPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAG  262 (279)
T ss_dssp             CCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCS
T ss_pred             CCCceeeEecCccc--CCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCC
Confidence            56899999999953  378899988632          167799999988776