Citrus Sinensis ID: 022717
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 293 | 2.2.26 [Sep-21-2011] | |||||||
| O45924 | 431 | 2-oxoisovalerate dehydrog | yes | no | 0.955 | 0.649 | 0.531 | 5e-88 | |
| Q54M22 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.986 | 0.655 | 0.493 | 2e-86 | |
| A5A6H9 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.959 | 0.631 | 0.494 | 8e-83 | |
| P50136 | 442 | 2-oxoisovalerate dehydrog | yes | no | 0.976 | 0.647 | 0.482 | 1e-82 | |
| Q8HXY4 | 445 | 2-oxoisovalerate dehydrog | N/A | no | 0.976 | 0.642 | 0.482 | 2e-82 | |
| P11960 | 441 | 2-oxoisovalerate dehydrog | yes | no | 0.976 | 0.648 | 0.482 | 2e-82 | |
| P12694 | 445 | 2-oxoisovalerate dehydrog | yes | no | 0.959 | 0.631 | 0.487 | 2e-82 | |
| P11178 | 455 | 2-oxoisovalerate dehydrog | yes | no | 0.976 | 0.628 | 0.482 | 5e-82 | |
| Q72GU1 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.924 | 0.738 | 0.430 | 4e-55 | |
| Q5SLR4 | 367 | 2-oxoisovalerate dehydrog | yes | no | 0.924 | 0.738 | 0.430 | 4e-54 |
| >sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 324 bits (830), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 195/282 (69%), Gaps = 2/282 (0%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVLLWRG++M+ F NQC+GN D GKGRQMP+H+G+ + N+ T+SS + TQLP AVG
Sbjct: 142 REAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVG 201
Query: 68 AAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD 126
+AYA K + + AV YFGDG SEGD HAA NF+A + P+IF CRNNG+AISTP S+
Sbjct: 202 SAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSE 261
Query: 127 QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186
Q+ DG KG AYG+ +IRVDGND LA+Y+A AR +A+ RP+LIEA+TYR+GHH+
Sbjct: 262 QYGGDGIAGKGPAYGLHTIRVDGNDLLAVYNATKEARRVAL-TNRPVLIEAMTYRLGHHS 320
Query: 187 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
TSDDST YR DE++ W P+TRF+K+I GWWN + E E + V+K++L A
Sbjct: 321 TSDDSTAYRSSDEVQTWGDKDHPITRFKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAA 380
Query: 247 EKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
EK +K DLF DVYD P LR Q L + ++ + YP
Sbjct: 381 EKRKKAHYHDLFEDVYDELPLRLRRQRDELDAHVAEYKEHYP 422
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required for the production of the monomethyl branched-chain fatty acids (mmBCFAs) isopentadecanoate (C15iso) and isoheptadecanoate (C17iso). Caenorhabditis elegans (taxid: 6239) EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4 |
| >sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (816), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 143/290 (49%), Positives = 198/290 (68%), Gaps = 1/290 (0%)
Query: 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 61
T + RE GV +WRGF++ + NQC N+ D GKGRQMP+H+GS K N T+SS + TQ
Sbjct: 141 TIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHFGSRKINLQTISSPLTTQ 200
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS 121
LP AVG++YA K+ + C + YFG+G SEGDFHAA+NF+A P IF CRNN WAIS
Sbjct: 201 LPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTPTIFFCRNNKWAIS 260
Query: 122 TPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180
TP +Q++ DG +G YG+++IRVDGND A+Y+ AR++A+ E P+LIEA+TY
Sbjct: 261 TPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTY 320
Query: 181 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
RVGHH+TSDDS++YR V+EI W+ ++P++R R ++ GWW+ E E ++ R +
Sbjct: 321 RVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVR 380
Query: 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 290
+L AEK KP I+++FTDVYD NL EQ+ L E +K +P +YP N
Sbjct: 381 ESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYPLN 430
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 139/281 (49%), Positives = 193/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 159 REAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVG 218
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 219 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 278
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 279 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 338
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W PV+R R ++ S GWW+ + E R RK+++ A ++AE
Sbjct: 339 SDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAE 398
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 399 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 194/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F +QC+GN D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 151 VFGQYREAGVLMYRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQI 210
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 211 PQAVGAAYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 270
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG++SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 271 PTSEQYRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 330
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YR VDE+ +W P++R R+++ + GWW+ + E R RK+++ A
Sbjct: 331 GHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEA 390
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP S LF+DVY P+ LR Q+ SL ++ + + YP
Sbjct: 391 FEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 436
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 193/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 154 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 213
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 214 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 273
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 274 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 333
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R RK+++ A
Sbjct: 334 GHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKA 393
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 394 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 193/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 150 VFGQYREAGVLMYRDYPLELFMAQCYGNVSDPGKGRQMPVHYGCKERHFVTISSPLATQI 209
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 210 PQAVGAAYAAKRANANQIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 269
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 270 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 329
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YR VDE+ +W P++R R+++ + GWW+ + E R RK+++ A
Sbjct: 330 GHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEA 389
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP S LF+DVY P+ LR Q+ SL ++ + + YP
Sbjct: 390 FEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 435
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 193/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 159 REAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVG 218
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 219 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 278
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 279 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 338
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE
Sbjct: 339 SDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 398
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 399 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 193/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 164 VFGQYREAGVLMYRDYPLELFMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQI 223
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 224 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 283
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 284 PTSEQYRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 343
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YR VDE+ +W P++R R ++S GWW+ + E R RK+++ A
Sbjct: 344 GHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEA 403
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP S +F+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 404 FEQAERKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 449
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 166/274 (60%), Gaps = 3/274 (1%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
R+ G+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A G
Sbjct: 96 RDHGLALALGIPLKELFGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAG 155
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AA ++K+ R AV FGDG TSEGD++A +NF+AV AP +F+C NN +AIS Q
Sbjct: 156 AAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQ 215
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHT 186
S K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+
Sbjct: 216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHS 274
Query: 187 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EA
Sbjct: 275 SADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEA 333
Query: 247 EKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280
E+A P +F DV+ P +L QE L+E +
Sbjct: 334 EEAGPVPPEWMFADVFAEKPWHLLRQEALLKEEL 367
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q5SLR4|ODBA_THET8 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 3/274 (1%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
R+ G+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A G
Sbjct: 96 RDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAG 155
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AA ++K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS Q
Sbjct: 156 AAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQ 215
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHT 186
S K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+
Sbjct: 216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHS 274
Query: 187 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EA
Sbjct: 275 SADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEA 333
Query: 247 EKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280
E+A P +F DV+ P +L QE L+E +
Sbjct: 334 EEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852) EC: 1 EC: . EC: 2 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 293 | ||||||
| 449507480 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.976 | 0.594 | 0.790 | 1e-140 | |
| 222616745 | 512 | hypothetical protein OsJ_35450 [Oryza sa | 0.993 | 0.568 | 0.783 | 1e-140 | |
| 218186540 | 479 | hypothetical protein OsI_37710 [Oryza sa | 0.993 | 0.607 | 0.783 | 1e-140 | |
| 449461865 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.976 | 0.594 | 0.790 | 1e-140 | |
| 115487674 | 486 | Os12g0183100 [Oryza sativa Japonica Grou | 0.993 | 0.598 | 0.783 | 1e-140 | |
| 108862263 | 487 | 2-oxoisovalerate dehydrogenase alpha sub | 0.993 | 0.597 | 0.783 | 1e-140 | |
| 225431715 | 481 | PREDICTED: 2-oxoisovalerate dehydrogenas | 0.972 | 0.592 | 0.796 | 1e-139 | |
| 255558474 | 380 | 2-oxoisovalerate dehydrogenase, putative | 0.993 | 0.765 | 0.773 | 1e-139 | |
| 212275011 | 488 | uncharacterized protein LOC100191513 [Ze | 0.993 | 0.596 | 0.762 | 1e-139 | |
| 297811017 | 472 | hypothetical protein ARALYDRAFT_350155 [ | 0.976 | 0.605 | 0.786 | 1e-138 |
| >gi|449507480|ref|XP_004163044.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 226/286 (79%), Positives = 260/286 (90%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL+WRGF+++EFA+QCFGNK DY KGRQMP+HYGS +HNYFTV+STIA+Q+PHAVG
Sbjct: 196 REAGVLIWRGFTLKEFASQCFGNKYDYCKGRQMPVHYGSKRHNYFTVASTIASQIPHAVG 255
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAY++KMD+KDACAVTYFGDGGTSEGDFHAALNF+AV EAPVIFICRNNGWAISTPISDQ
Sbjct: 256 AAYSMKMDKKDACAVTYFGDGGTSEGDFHAALNFAAVLEAPVIFICRNNGWAISTPISDQ 315
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
FRSDG VVKG+AYGVRSIRVDGNDALA+Y+AV AAREMAI E RPILIEALTYR GHHTT
Sbjct: 316 FRSDGVVVKGQAYGVRSIRVDGNDALAVYNAVRAAREMAIQEQRPILIEALTYRAGHHTT 375
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDST+YRP +E+EWWR DPV+RFRKWIESNGWW+ + E+ELRS +RKQ+L +Q AE
Sbjct: 376 SDDSTRYRPAEEMEWWRVAMDPVSRFRKWIESNGWWSNEAEAELRSRLRKQLLEEIQLAE 435
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
++EKPP++D FTDVYDV PSNL+EQE LR+TIK HPQDYPSN P+
Sbjct: 436 RSEKPPVADAFTDVYDVPPSNLQEQEKWLRKTIKTHPQDYPSNFPL 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222616745|gb|EEE52877.1| hypothetical protein OsJ_35450 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/291 (78%), Positives = 263/291 (90%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
L REPGVLLWRGF++QEFANQCFGNK DYGKGRQMPIHYGSN+ NYFTVSS IATQL
Sbjct: 222 VLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQL 281
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
PHAVGAAY+LKMD+KDACA+TYFGDGGTSEGDFHAALNF+AV EAPVIF CRNNGWAIST
Sbjct: 282 PHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAIST 341
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+QFRSDGAV++G+AYG+RSIRVDGNDALA+YSAVH AREMAI EGRPIL+EALTYRV
Sbjct: 342 PTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRV 401
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDSTKYRPVDEIE WRT +DP++R+RKW++ NGWW + ESELR++VR+++L A
Sbjct: 402 GHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKA 461
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
+Q AE+ KPP+++LFTDVYD PSNLREQE LR+TIKKHP DYP++V I
Sbjct: 462 IQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADYPADVHI 512
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218186540|gb|EEC68967.1| hypothetical protein OsI_37710 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/291 (78%), Positives = 263/291 (90%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
L REPGVLLWRGF++QEFANQCFGNK DYGKGRQMPIHYGSN+ NYFTVSS IATQL
Sbjct: 189 VLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQL 248
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
PHAVGAAY+LKMD+KDACA+TYFGDGGTSEGDFHAALNF+AV EAPVIF CRNNGWAIST
Sbjct: 249 PHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAIST 308
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+QFRSDGAV++G+AYG+RSIRVDGNDALA+YSAVH AREMAI EGRPIL+EALTYRV
Sbjct: 309 PTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRV 368
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDSTKYRPVDEIE WRT +DP++R+RKW++ NGWW + ESELR++VR+++L A
Sbjct: 369 GHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKA 428
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
+Q AE+ KPP+++LFTDVYD PSNLREQE LR+TIKKHP DYP++V I
Sbjct: 429 IQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADYPADVHI 479
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461865|ref|XP_004148662.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 226/286 (79%), Positives = 259/286 (90%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL+WRGF+++EFA+QCFGNK DY KGRQMP+HYGS +HNYFTV+STIA+Q+PHAVG
Sbjct: 196 REAGVLIWRGFTLKEFASQCFGNKYDYCKGRQMPVHYGSKRHNYFTVASTIASQIPHAVG 255
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAY++KMD+KDACAVTYFGDGGTSEGDFHAALNF+AV EAPVIFICRNNGWAISTPISDQ
Sbjct: 256 AAYSMKMDKKDACAVTYFGDGGTSEGDFHAALNFAAVLEAPVIFICRNNGWAISTPISDQ 315
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
FRSDG VVKG+AYGVRSIRVDGNDALA+Y+AV AAREMAI E RPILIEALTYR GHHTT
Sbjct: 316 FRSDGVVVKGQAYGVRSIRVDGNDALAVYNAVRAAREMAIQEQRPILIEALTYRAGHHTT 375
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDST+YRP E+EWWR DPV+RFRKWIESNGWW+ + E+ELRS +RKQ+L +Q AE
Sbjct: 376 SDDSTRYRPAQEMEWWRVAMDPVSRFRKWIESNGWWSNEAEAELRSRLRKQLLEEIQLAE 435
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
++EKPP++D FTDVYDV PSNL+EQE LR+TIK HPQDYPSN P+
Sbjct: 436 RSEKPPVADAFTDVYDVPPSNLQEQEKWLRKTIKTHPQDYPSNFPL 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115487674|ref|NP_001066324.1| Os12g0183100 [Oryza sativa Japonica Group] gi|77553175|gb|ABA95971.1| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|108862262|gb|ABA95970.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113648831|dbj|BAF29343.1| Os12g0183100 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/291 (78%), Positives = 263/291 (90%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
L REPGVLLWRGF++QEFANQCFGNK DYGKGRQMPIHYGSN+ NYFTVSS IATQL
Sbjct: 196 VLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQL 255
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
PHAVGAAY+LKMD+KDACA+TYFGDGGTSEGDFHAALNF+AV EAPVIF CRNNGWAIST
Sbjct: 256 PHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAIST 315
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+QFRSDGAV++G+AYG+RSIRVDGNDALA+YSAVH AREMAI EGRPIL+EALTYRV
Sbjct: 316 PTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRV 375
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDSTKYRPVDEIE WRT +DP++R+RKW++ NGWW + ESELR++VR+++L A
Sbjct: 376 GHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKA 435
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
+Q AE+ KPP+++LFTDVYD PSNLREQE LR+TIKKHP DYP++V I
Sbjct: 436 IQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADYPADVHI 486
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|108862263|gb|ABA95968.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|108862264|gb|ABA95969.2| 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/291 (78%), Positives = 263/291 (90%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
L REPGVLLWRGF++QEFANQCFGNK DYGKGRQMPIHYGSN+ NYFTVSS IATQL
Sbjct: 197 VLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQL 256
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
PHAVGAAY+LKMD+KDACA+TYFGDGGTSEGDFHAALNF+AV EAPVIF CRNNGWAIST
Sbjct: 257 PHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAIST 316
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+QFRSDGAV++G+AYG+RSIRVDGNDALA+YSAVH AREMAI EGRPIL+EALTYRV
Sbjct: 317 PTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRV 376
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDSTKYRPVDEIE WRT +DP++R+RKW++ NGWW + ESELR++VR+++L A
Sbjct: 377 GHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKA 436
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
+Q AE+ KPP+++LFTDVYD PSNLREQE LR+TIKKHP DYP++V I
Sbjct: 437 IQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADYPADVHI 487
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431715|ref|XP_002265166.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera] gi|296088533|emb|CBI37524.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 227/285 (79%), Positives = 258/285 (90%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
REPGVLLWRGF++QEFANQCFGNKADYGKGRQMPIHYGSNKHNY TVSST+ATQ+P AVG
Sbjct: 195 REPGVLLWRGFTLQEFANQCFGNKADYGKGRQMPIHYGSNKHNYVTVSSTVATQIPQAVG 254
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAY+LKMD KDAC VTYFGDGG+S GDFHAALNF+AV EAPVIFICRNNGWAISTP+SDQ
Sbjct: 255 AAYSLKMDGKDACTVTYFGDGGSSTGDFHAALNFAAVMEAPVIFICRNNGWAISTPVSDQ 314
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
FRSDG VV+GR YGVRSIRVDGNDALA+Y+AVHAAR+MAI E RPILIEALTYR GHH+T
Sbjct: 315 FRSDGVVVRGRGYGVRSIRVDGNDALAMYTAVHAARKMAITEHRPILIEALTYRAGHHST 374
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+KYRPV EIE WR +DPV+R R+WIESN WW+G+ ESELRS+VRK++L A+Q AE
Sbjct: 375 SDDSSKYRPVSEIELWRMARDPVSRLRRWIESNDWWSGEAESELRSNVRKEVLDAIQVAE 434
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 292
+ EKPPI+++FTDVYD PSNL EQE LRETI+++PQDYP +VP
Sbjct: 435 RVEKPPIAEIFTDVYDAPPSNLCEQEKLLRETIRRYPQDYPPDVP 479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558474|ref|XP_002520262.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] gi|223540481|gb|EEF42048.1| 2-oxoisovalerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 225/291 (77%), Positives = 255/291 (87%)
Query: 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 61
L REPGVLLWRGF++QEFANQCFGNKADYG+GRQMPIHYGSNKHNYFTVSS IATQ
Sbjct: 89 VVLPQYREPGVLLWRGFTLQEFANQCFGNKADYGRGRQMPIHYGSNKHNYFTVSSPIATQ 148
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS 121
LP AVG AY+LKM++KDAC VTY GDGGTSEGDFHAALNF+AVTEAPVIFICRNNGWAIS
Sbjct: 149 LPQAVGVAYSLKMEKKDACVVTYIGDGGTSEGDFHAALNFAAVTEAPVIFICRNNGWAIS 208
Query: 122 TPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181
T IS+QFRSDG VVKG+AYG++SIRVDGNDALA+Y + AAR++A+ E RP+L+EALTYR
Sbjct: 209 THISEQFRSDGIVVKGKAYGIQSIRVDGNDALAVYRTIRAARQIAVSEQRPVLVEALTYR 268
Query: 182 VGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241
VGHH+TSDDSTKYRP DEIE+W+ ++PV RFRKW+E NGWW+ ESELRSSVRKQ+L
Sbjct: 269 VGHHSTSDDSTKYRPADEIEYWKMARNPVNRFRKWVERNGWWSDKEESELRSSVRKQLLQ 328
Query: 242 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 292
A+Q AEK EKPP+ D+FTDVYD+ SNLREQE LRETI HPQDYPS VP
Sbjct: 329 AIQVAEKTEKPPLGDMFTDVYDIPSSNLREQEKQLRETISAHPQDYPSVVP 379
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212275011|ref|NP_001130417.1| uncharacterized protein LOC100191513 [Zea mays] gi|194689064|gb|ACF78616.1| unknown [Zea mays] gi|194690354|gb|ACF79261.1| unknown [Zea mays] gi|194690522|gb|ACF79345.1| unknown [Zea mays] gi|194703080|gb|ACF85624.1| unknown [Zea mays] gi|413916413|gb|AFW56345.1| hypothetical protein ZEAMMB73_816012 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 222/291 (76%), Positives = 259/291 (89%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
L REPGVLLWRGF++QEFANQCFGNK DYGKGRQMPIHYGSN+ NYFTVSS IATQL
Sbjct: 198 VLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQL 257
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
PHAVGAAY+LKMD+KDACA+TYFGDGGTSEGDFHAALNF+AV EAPVIF CRNNGWAIST
Sbjct: 258 PHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAIST 317
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P ++QFRSDG V++G+AYG+R IRVDGNDALA+YSA+HAAREMA+ EGRPIL+EALTYRV
Sbjct: 318 PTTEQFRSDGVVIRGQAYGIRGIRVDGNDALAVYSAIHAAREMAVTEGRPILVEALTYRV 377
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDSTKYRPVDEIE WRT +DP++R+RKW++ N WW+ ESELRS VRK++L A
Sbjct: 378 GHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNDWWSDAEESELRSRVRKELLQA 437
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
+Q AE+ KPP+++LFTDVYD PSNL EQE LR+TI +HP DYP++VP+
Sbjct: 438 IQVAERMPKPPVTELFTDVYDKIPSNLHEQEQLLRDTIMRHPADYPTDVPV 488
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811017|ref|XP_002873392.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] gi|297319229|gb|EFH49651.1| hypothetical protein ARALYDRAFT_350155 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 225/286 (78%), Positives = 258/286 (90%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
REPGVLLWRGF++QEFANQCFGNK+DYGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVG
Sbjct: 187 REPGVLLWRGFTLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVG 246
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAY+LKMDRKDACAVTYFGDGGTSEGDFHAALNF+AV EAPVIFICRNNGWAISTP SDQ
Sbjct: 247 AAYSLKMDRKDACAVTYFGDGGTSEGDFHAALNFAAVMEAPVIFICRNNGWAISTPTSDQ 306
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
FRSDG VVKGRAYG+RSIRVDGNDALA+YSAVH AR MAI E RPILIEALTYRVGHH+T
Sbjct: 307 FRSDGVVVKGRAYGIRSIRVDGNDALAMYSAVHTARGMAISEQRPILIEALTYRVGHHST 366
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDST+YR DEIEWW ++P++RFR WIESNGWW+ + ES+LRS ++K++L AL+ AE
Sbjct: 367 SDDSTRYRSADEIEWWNKARNPLSRFRTWIESNGWWSDEAESDLRSRIKKEMLEALRVAE 426
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
K EKP + ++F+DVYDV PSNL EQE +R+TI HPQDYP++VP+
Sbjct: 427 KTEKPNLKNMFSDVYDVPPSNLMEQELLVRQTIDSHPQDYPTDVPL 472
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 293 | ||||||
| TAIR|locus:2184702 | 472 | AT5G09300 "AT5G09300" [Arabido | 0.976 | 0.605 | 0.783 | 2.3e-126 | |
| TAIR|locus:2027072 | 472 | AT1G21400 "AT1G21400" [Arabido | 0.972 | 0.603 | 0.729 | 1.3e-118 | |
| WB|WBGene00012713 | 432 | Y39E4A.3 [Caenorhabditis elega | 0.955 | 0.648 | 0.531 | 7.4e-82 | |
| TAIR|locus:2184501 | 365 | AT5G34780 [Arabidopsis thalian | 0.757 | 0.608 | 0.671 | 1.1e-80 | |
| DICTYBASE|DDB_G0286335 | 441 | bkdA "branched-chain alpha-ket | 0.986 | 0.655 | 0.493 | 2.6e-79 | |
| UNIPROTKB|F1N5F2 | 455 | BCKDHA "2-oxoisovalerate dehyd | 0.959 | 0.617 | 0.491 | 8.7e-79 | |
| UNIPROTKB|P11178 | 455 | BCKDHA "2-oxoisovalerate dehyd | 0.959 | 0.617 | 0.491 | 8.7e-79 | |
| UNIPROTKB|F1RHA0 | 411 | LOC100738911 "Uncharacterized | 0.959 | 0.683 | 0.491 | 8.7e-79 | |
| UNIPROTKB|I3LNR4 | 447 | LOC100738911 "Uncharacterized | 0.959 | 0.628 | 0.491 | 8.7e-79 | |
| MGI|MGI:107701 | 442 | Bckdha "branched chain ketoaci | 0.959 | 0.635 | 0.491 | 8.7e-79 |
| TAIR|locus:2184702 AT5G09300 "AT5G09300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
Identities = 224/286 (78%), Positives = 257/286 (89%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
REPGVLLWRGF++QEFANQCFGNK+DYGKGRQMP+HYGSNK NYFTVS+TIATQLP+AVG
Sbjct: 187 REPGVLLWRGFTLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVG 246
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAY+LKMD+KDACAVTYFGDGGTSEGDFHAALN +AV EAPV+FICRNNGWAISTP SDQ
Sbjct: 247 AAYSLKMDKKDACAVTYFGDGGTSEGDFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQ 306
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
FRSDG VVKGRAYG+RSIRVDGNDALA+YSAVH AREMAI E RPILIEALTYRVGHH+T
Sbjct: 307 FRSDGVVVKGRAYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHST 366
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDST+YR EIEWW ++P++RFR WIESNGWW+ ES+LRS ++K++L AL+ AE
Sbjct: 367 SDDSTRYRSAGEIEWWNKARNPLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAE 426
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVPI 293
K EKP + ++F+DVYDV PSNLREQE +R+TI HPQDYPS+VP+
Sbjct: 427 KTEKPNLQNMFSDVYDVPPSNLREQELLVRQTINSHPQDYPSDVPL 472
|
|
| TAIR|locus:2027072 AT1G21400 "AT1G21400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 208/285 (72%), Positives = 246/285 (86%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
L REPGVLLWRGF+++EFANQCFGNKADYGKGRQMPIHYGSN+ NYFT+SS IATQLP
Sbjct: 183 LPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIATQLP 242
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A G Y+LKMD+K+AC VT+ GDGGTSEGDFHA LNF+AV EAPV+FICRNNGWAIST
Sbjct: 243 QAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTH 302
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
IS+QFRSDG VVKG+AYG+RSIRVDGNDALA+YSAV +AREMA+ E RP+LIE +TYRVG
Sbjct: 303 ISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEMMTYRVG 362
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
HH+TSDDSTKYR DEI++W+ +++PV RFRKW+E NGWW+ + ES+LRS+ RKQ+L A+
Sbjct: 363 HHSTSDDSTKYRAADEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAI 422
Query: 244 QEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
Q AEK EK P+++LF DVYDV P NL EQE L+E +KK PQDYP
Sbjct: 423 QAAEKWEKQPLTELFNDVYDVKPKNLEEQELGLKELVKKQPQDYP 467
|
|
| WB|WBGene00012713 Y39E4A.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 150/282 (53%), Positives = 195/282 (69%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVLLWRG++M+ F NQC+GN D GKGRQMP+H+G+ + N+ T+SS + TQLP AVG
Sbjct: 143 REAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVG 202
Query: 68 AAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD 126
+AYA K + + AV YFGDG SEGD HAA NF+A + P+IF CRNNG+AISTP S+
Sbjct: 203 SAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAATLKCPIIFFCRNNGYAISTPTSE 262
Query: 127 QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186
Q+ DG KG AYG+ +IRVDGND LA+Y+A AR +A+ RP+LIEA+TYR+GHH+
Sbjct: 263 QYGGDGIAGKGPAYGLHTIRVDGNDLLAVYNATKEARRVAL-TNRPVLIEAMTYRLGHHS 321
Query: 187 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
TSDDST YR DE++ W P+TRF+K+I GWWN + E E + V+K++L A
Sbjct: 322 TSDDSTAYRSSDEVQTWGDKDHPITRFKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAA 381
Query: 247 EKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
EK +K DLF DVYD P LR Q L + ++ + YP
Sbjct: 382 EKRKKAHYHDLFEDVYDELPLRLRRQRDELDAHVAEYKEHYP 423
|
|
| TAIR|locus:2184501 AT5G34780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 149/222 (67%), Positives = 183/222 (82%)
Query: 66 VGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 125
+G + A K+ACAVT+ GDGGTSEGDFHA LNF+AV EAPV+FICRNNGWAIST IS
Sbjct: 15 IGLSKAKDCWEKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTHIS 74
Query: 126 DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 185
+QFRSDG VVKG+AYG+RSIRVDGNDALA+YSAV +AREMA+ E RP+LIE + YRVGHH
Sbjct: 75 EQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVCSAREMAVTEQRPVLIEMMIYRVGHH 134
Query: 186 TTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 245
+TSDDSTKYR DEI++W+ +++ V RFRK +E NGWW+ + ES+LRS+ RKQ+L A+Q
Sbjct: 135 STSDDSTKYRAADEIQYWKMSRNSVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQA 194
Query: 246 AEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDY 287
AEK EK P+++LF DVYDV P NL E+E L+E I+K PQDY
Sbjct: 195 AEKWEKQPLTELFNDVYDVKPKNLEEEELGLKELIEKQPQDY 236
|
|
| DICTYBASE|DDB_G0286335 bkdA "branched-chain alpha-keto acid dehydrogenase E1 alpha chain" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 143/290 (49%), Positives = 198/290 (68%)
Query: 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 61
T + RE GV +WRGF++ + NQC N+ D GKGRQMP+H+GS K N T+SS + TQ
Sbjct: 141 TIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHFGSRKINLQTISSPLTTQ 200
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS 121
LP AVG++YA K+ + C + YFG+G SEGDFHAA+NF+A P IF CRNN WAIS
Sbjct: 201 LPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTPTIFFCRNNKWAIS 260
Query: 122 TPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180
TP +Q++ DG +G YG+++IRVDGND A+Y+ AR++A+ E P+LIEA+TY
Sbjct: 261 TPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTY 320
Query: 181 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
RVGHH+TSDDS++YR V+EI W+ ++P++R R ++ GWW+ E E ++ R +
Sbjct: 321 RVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVR 380
Query: 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 290
+L AEK KP I+++FTDVYD NL EQ+ L E +K +P +YP N
Sbjct: 381 ESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYPLN 430
|
|
| UNIPROTKB|F1N5F2 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 138/281 (49%), Positives = 193/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 169 REAGVLMYRDYPLELFMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVG 228
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 229 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 288
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 289 YRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 348
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W P++R R ++S GWW+ + E R RK+++ A ++AE
Sbjct: 349 SDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAE 408
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP S +F+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 409 RKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 449
|
|
| UNIPROTKB|P11178 BCKDHA "2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 138/281 (49%), Positives = 193/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 169 REAGVLMYRDYPLELFMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVG 228
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 229 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 288
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 289 YRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 348
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W P++R R ++S GWW+ + E R RK+++ A ++AE
Sbjct: 349 SDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAE 408
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP S +F+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 409 RKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 449
|
|
| UNIPROTKB|F1RHA0 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 138/281 (49%), Positives = 193/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+ N +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 125 REAGVLMYRDYPLELFMAQCYSNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVG 184
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 185 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 244
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 245 YRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 304
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W P++R R +++S GWW+ + E R RK+++ A Q+AE
Sbjct: 305 SDDSSAYRSVDEVSYWDKQDHPISRLRHYLQSRGWWDDEQEKAWRKQSRKKVMEAFQQAE 364
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 365 RKLKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 405
|
|
| UNIPROTKB|I3LNR4 LOC100738911 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 138/281 (49%), Positives = 193/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+ N +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 161 REAGVLMYRDYPLELFMAQCYSNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVG 220
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 221 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 280
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 281 YRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 340
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W P++R R +++S GWW+ + E R RK+++ A Q+AE
Sbjct: 341 SDDSSAYRSVDEVSYWDKQDHPISRLRHYLQSRGWWDDEQEKAWRKQSRKKVMEAFQQAE 400
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 401 RKLKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 441
|
|
| MGI|MGI:107701 Bckdha "branched chain ketoacid dehydrogenase E1, alpha polypeptide" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 138/281 (49%), Positives = 194/281 (69%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F +QC+GN D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 156 REAGVLMYRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVG 215
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 216 AAYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 275
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG++SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GHH+T
Sbjct: 276 YRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHST 335
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ YR VDE+ +W P++R R+++ + GWW+ + E R RK+++ A ++AE
Sbjct: 336 SDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAE 395
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP S LF+DVY P+ LR Q+ SL ++ + + YP
Sbjct: 396 RKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 436
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O45924 | ODBA_CAEEL | 1, ., 2, ., 4, ., 4 | 0.5319 | 0.9556 | 0.6496 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.2.4 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 293 | |||
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph | 1e-118 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena | 1e-109 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E | 1e-100 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 1e-93 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E | 5e-61 | |
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp | 1e-38 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 componen | 1e-34 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl | 5e-27 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) | 5e-12 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami | 2e-10 | |
| PRK05899 | 586 | PRK05899, PRK05899, transketolase; Reviewed | 5e-08 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subuni | 2e-06 | |
| cd02002 | 178 | cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa | 3e-05 | |
| COG0021 | 663 | COG0021, TktA, Transketolase [Carbohydrate transpo | 3e-04 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam | 0.001 |
| >gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 341 bits (877), Expect = e-118
Identities = 103/239 (43%), Positives = 146/239 (61%), Gaps = 1/239 (0%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
R+ G L RG ++E + FG + KGR +H G + N+F + + Q+P A G
Sbjct: 56 RDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAG 115
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AA ALK +D AV +FGDG T+EGDFH ALNF+A+ + PVIF+C NNG+AISTP S Q
Sbjct: 116 AALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQ 175
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+ AYG+ IRVDGND LA+Y A A E A G P LIEA+TYR+G H+T
Sbjct: 176 TAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
SDD ++YR +E+E W+ +DP+ R RK++ G + + + + V+ ++ A++ A
Sbjct: 236 SDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293 |
| >gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 319 bits (821), Expect = e-109
Identities = 112/276 (40%), Positives = 159/276 (57%), Gaps = 2/276 (0%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+ R+ G LL RG ++E + G KGR +HY + + S + TQ+P
Sbjct: 84 FPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIP 143
Query: 64 HAVGAAYALKM-DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
A GAA ALK KD AV +FGDG T++GDFH ALNF+AV + PV+F+ NN +AIS
Sbjct: 144 LAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISV 203
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S Q ++ + AYG+ +RVDGND LA+Y A A E A P LIEA+TYR
Sbjct: 204 PRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRY 263
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
G H+TSDD +KYR +E+E W+ +DP+ R RK++ G + + + + + ++ A
Sbjct: 264 GGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEA 322
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 278
++ AE + P +S+LF DVY P +L EQ L E
Sbjct: 323 VEFAEASPYPDVSELFEDVYAEGPPHLEEQREELEE 358
|
Length = 358 |
| >gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 296 bits (761), Expect = e-100
Identities = 114/271 (42%), Positives = 150/271 (55%), Gaps = 12/271 (4%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
S R+ +L RG + E G++ +G P N + I TQ
Sbjct: 79 FPSYRDHAAMLARGVPLVEILLYWRGDE----RGSWDP-----EGVNILPPNIPIGTQYL 129
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
HA G AYALK+ +D AVTYFGDGGTSEGDF+ ALNF+ V +APV+F +NN WAIS P
Sbjct: 130 HAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVP 189
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
S Q + K AYG+ ++VDGND LA+Y+ A E A G P LIEA+TYR+G
Sbjct: 190 RSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLG 249
Query: 184 HHTTSDDSTKYRPVDEI-EWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
HTT+DD T+YR +E EW + DP+ R RK++E G W+ + E L ++ A
Sbjct: 250 PHTTADDPTRYRTKEEEEEWRKK--DPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEA 307
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQE 273
+ EA PP+ D+F VY P L EQ
Sbjct: 308 VAEALALPPPPVDDIFDHVYAELPPELEEQR 338
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341 |
| >gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 1e-93
Identities = 97/254 (38%), Positives = 140/254 (55%), Gaps = 2/254 (0%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 61
+ + R+ G LL RG S+++ + GN+ GKG M +Y + ++ + + Q
Sbjct: 50 IPTYRDHGNLLARGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQ 109
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS 121
+P G A A K K A+T FGDG T++G F ALNF+A+ + PVIF+C NN +AIS
Sbjct: 110 VPLGAGIALAAKYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAIS 169
Query: 122 TPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181
TP S + R YG+ IRVDG D LA+Y AV A E A P LIE +TYR
Sbjct: 170 TPAERSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYR 229
Query: 182 VGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241
G H+ SDD + YR +E+E R +DP+ R +K + S G + + E+ VRK+I
Sbjct: 230 YGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEE 289
Query: 242 ALQEAEKAEKPPIS 255
A+++AE +P
Sbjct: 290 AVKKAESDPEPNPE 303
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 5e-61
Identities = 85/262 (32%), Positives = 137/262 (52%), Gaps = 10/262 (3%)
Query: 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 64
+S R+ G L RG +E + G + KG+ +H + N++ + Q+P
Sbjct: 59 TSYRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPL 118
Query: 65 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 124
A G A+A K D +FGDG ++G F+ + N +A+ + PVIF+ NN +A+ T +
Sbjct: 119 ATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTAV 178
Query: 125 SDQFRSDGAV----VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180
RS +V +G ++G+ RVDG D LA+ A A E A PIL+E TY
Sbjct: 179 E---RSS-SVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTY 234
Query: 181 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
R H+ S D KYR +E+E WR +DP+ + + + G + + E+ VR ++
Sbjct: 235 RFRGHSMS-DPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVE 292
Query: 241 HALQEAEKAEKPPISDLFTDVY 262
A++ AE + +PP+ +L+TDVY
Sbjct: 293 EAVEFAENSPEPPVEELYTDVY 314
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315 |
| >gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 1e-38
Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 19/267 (7%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R+ L RG ++ E + G K +G+ +H+ N++ + Q+P
Sbjct: 86 ITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVP 145
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A+A K ++++ A +GDG ++G ALN +A+ + PVIF+C NN + + T
Sbjct: 146 LGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTA 205
Query: 124 I-----SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178
S + G V G ++VDG D LA+ A A+E A+ G PI++E
Sbjct: 206 EWRAAKSPAYYKRGDYVPG-------LKVDGMDVLAVKQACKFAKEHALSNG-PIVLEMD 257
Query: 179 TYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS---SV 235
TYR H+ SD + YR DEI R +DP+ R RK + ++ E+EL+ +
Sbjct: 258 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELAT---EAELKDIEKEI 314
Query: 236 RKQILHALQEAEKAEKPPISDLFTDVY 262
RK++ A+ +A+++ P S+LFT+VY
Sbjct: 315 RKEVDDAVAKAKESPMPDPSELFTNVY 341
|
Length = 362 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 1e-34
Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 23/263 (8%)
Query: 14 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 73
L +G + + FG + +GR +H S HN+ + I +P A+GAA+
Sbjct: 86 LSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQ-S 144
Query: 74 MDRKDACAVT--------YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI----- 120
+ R+ +FGDG T+ G F LN + + + P+IF+ NN WAI
Sbjct: 145 IYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHH 204
Query: 121 -STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179
ST I + + K A+G+ I VDG D LA+ A E A P LIEALT
Sbjct: 205 RSTSIPEIHK------KAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALT 258
Query: 180 YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQI 239
YR H+ +D + R E E W +DP+ + + +I N + ++++ V+ +I
Sbjct: 259 YRFRGHSLADPD-ELRSKQEKEAW-VARDPIKKLKSYIIDNELASQKELNKIQREVKIEI 316
Query: 240 LHALQEAEKAEKPPISDLFTDVY 262
A+Q A + +P ISDL ++
Sbjct: 317 EQAVQFAISSPEPNISDLKKYLF 339
|
Length = 341 |
| >gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-27
Identities = 77/264 (29%), Positives = 127/264 (48%), Gaps = 25/264 (9%)
Query: 14 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 73
L +G + ++ FG +G+ +H S +HN + I +P A GAA++ K
Sbjct: 152 LSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSK 211
Query: 74 MDRK-------DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD 126
R+ D + +FGDG + G F LN +A+ + P++F+ NN WAI
Sbjct: 212 YRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM---S 268
Query: 127 QFR--SDGAV-VKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRV 182
R SD + KG A+G+ + VDG D L + A E A GEG P L+E TYR
Sbjct: 269 HLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG-PTLVECETYRF 327
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
H+ +D P ++ + +DP+ +K++ NG E+EL+ ++ K+I
Sbjct: 328 RGHSLADPDELRDPAEKAHY--AARDPIAALKKYLIENGLAT---EAELK-AIEKKIDEV 381
Query: 243 LQE----AEKAEKPPISDLFTDVY 262
+++ A+ + PP S L +V+
Sbjct: 382 VEDAVEFADASPLPPRSQLLENVF 405
|
Length = 433 |
| >gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN--FSAVTE 106
T + LP A+GAA A D V GDGG F +AV
Sbjct: 39 FLTSTGFGAMGYGLPAAIGAALA----APDRPVVCIAGDGG-----FMMTGQELATAVRY 89
Query: 107 -APVIFICRNNGWAISTPISDQFRSDGAVVK-----------GRAYGVRSIRVDGNDALA 154
PVI + NNG + + + G V AYG + +RV+ + L
Sbjct: 90 GLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLE 149
Query: 155 IYSAVHAAREMAIGEGRPILIEALT 179
AA A+ G P LIE T
Sbjct: 150 ------AALAEALAAGGPALIEVKT 168
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168 |
| >gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-10
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRNNGWAI 120
L AVG A A K+ D GDG EG A +F+ + +I I +N I
Sbjct: 111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQI 170
Query: 121 STPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179
P D ++ K A+G I VDG+D I +A+ A++ +G+P LI A T
Sbjct: 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKK---SKGKPTLIIAKT 226
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255 |
| >gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 5e-08
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 62 LPHAVGAAYALKM-----DRKDACAVTYF-----GDGGTSEGDFHAALNFSAVTE--APV 109
L +AVG A A K +R V ++ GDG EG H A + A +
Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSL-AGHLKLGNL 182
Query: 110 IFICRNNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAI 167
I I +N +I P F D VK R AYG I VDG+D AI +A+ A+
Sbjct: 183 IVIYDDNRISIDGPTEGWFTED---VKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA--- 236
Query: 168 GEGRPILIEALT 179
+P LI A T
Sbjct: 237 -STKPTLIIAKT 247
|
Length = 586 |
| >gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWA 119
L AVG A K+ GDG EG A +A + + + RN
Sbjct: 125 LSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKL-Q 183
Query: 120 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179
+ + + K A+G I VDG+D I A+ A+ +GRP +I A T
Sbjct: 184 LDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPTVIIAKT 240
|
Length = 243 |
| >gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 36/143 (25%), Positives = 50/143 (34%), Gaps = 44/143 (30%)
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS---AVTEA----PVIF-IC 113
LP AVGAA A DRK + GDG + ++ T A PV I
Sbjct: 55 LPAAVGAALANP-DRKVVAII---GDG---------SFMYTIQALWTAARYGLPVTVVIL 101
Query: 114 RNNGWAISTPISDQFRSDGAVVKG-----------------RAYGVRSIRVDGNDALAIY 156
N G+ + +G +A+GV + RV+ + L
Sbjct: 102 NNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELD-- 159
Query: 157 SAVHAAREMAIGEGRPILIEALT 179
A A+ EG P LIE +
Sbjct: 160 ----EALREALAEGGPALIEVVV 178
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178 |
| >gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 62 LPHAVGAAYALKM-----DRKDACAV---TY--FGDGGTSEGDFHAALNFSAV-TEAPVI 110
L +AVG A A K +R V TY GDG EG H A + + +I
Sbjct: 122 LANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLI 181
Query: 111 FICRNNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRV-DGNDALAIYSAVHAAREMAI 167
+ +N +I S F D V R AYG IRV DG+D AI A+ A+
Sbjct: 182 VLYDSNDISIDGDTSLSFTED---VAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA--- 235
Query: 168 GEGRPILIEALT 179
+P LI T
Sbjct: 236 STDKPTLIIVKT 247
|
Length = 663 |
| >gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 48 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA 107
+++ F + +T + A+G A A + K + GDG + G ALN + ++
Sbjct: 68 EYDAFGTGHS-STSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKS 126
Query: 108 PVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE 164
+I I +N +IS + F G R G VDG++ A+ + ++
Sbjct: 127 NMIVILNDNEMSISPNVGTPGNLFEELGF----RYIGP----VDGHNIEALIKVLKEVKD 178
Query: 165 MAIGEGRPILIEALT 179
+ P+L+ +T
Sbjct: 179 L----KGPVLLHVVT 189
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 293 | |||
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| PLN02269 | 362 | Pyruvate dehydrogenase E1 component subunit alpha | 100.0 | |
| CHL00149 | 341 | odpA pyruvate dehydrogenase E1 component alpha sub | 100.0 | |
| KOG1182 | 432 | consensus Branched chain alpha-keto acid dehydroge | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, | 100.0 | |
| PF00676 | 300 | E1_dh: Dehydrogenase E1 component; InterPro: IPR00 | 100.0 | |
| KOG0225 | 394 | consensus Pyruvate dehydrogenase E1, alpha subunit | 100.0 | |
| PLN02374 | 433 | pyruvate dehydrogenase (acetyl-transferring) | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) | 100.0 | |
| PRK09404 | 924 | sucA 2-oxoglutarate dehydrogenase E1 component; Re | 100.0 | |
| TIGR00239 | 929 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami | 100.0 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| KOG0450 | 1017 | consensus 2-oxoglutarate dehydrogenase, E1 subunit | 99.97 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.97 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydro | 99.96 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transk | 99.95 | |
| KOG0451 | 913 | consensus Predicted 2-oxoglutarate dehydrogenase, | 99.95 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate tr | 99.95 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.95 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s | 99.95 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 99.94 | |
| PRK12753 | 663 | transketolase; Reviewed | 99.94 | |
| PTZ00089 | 661 | transketolase; Provisional | 99.94 | |
| PRK05899 | 624 | transketolase; Reviewed | 99.93 | |
| PLN02790 | 654 | transketolase | 99.93 | |
| PF00456 | 332 | Transketolase_N: Transketolase, thiamine diphospha | 99.93 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam | 99.92 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.91 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 99.9 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 99.9 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosph | 99.89 | |
| TIGR00759 | 885 | aceE pyruvate dehydrogenase E1 component, homodime | 99.87 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S | 99.87 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 99.86 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.85 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subuni | 99.83 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.83 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, | 99.83 | |
| KOG0523 | 632 | consensus Transketolase [Carbohydrate transport an | 99.83 | |
| PRK13012 | 896 | 2-oxoacid dehydrogenase subunit E1; Provisional | 99.83 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam | 99.82 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s | 99.81 | |
| PRK09405 | 891 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 99.81 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa | 99.8 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC | 99.8 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv | 99.79 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, | 99.79 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto | 99.78 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 99.78 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD | 99.77 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet | 99.77 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE | 99.77 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil | 99.76 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp | 99.76 | |
| PRK05261 | 785 | putative phosphoketolase; Provisional | 99.76 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, | 99.75 | |
| PF02775 | 153 | TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter | 99.75 | |
| TIGR03846 | 181 | sulfopy_beta sulfopyruvate decarboxylase, beta sub | 99.74 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 99.73 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 99.72 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 99.72 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa | 99.72 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 99.7 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.7 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.69 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 99.68 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 99.68 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.68 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam | 99.68 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.68 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.67 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 99.67 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o | 99.67 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 99.67 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 99.67 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.66 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 99.66 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 99.66 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.66 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 99.66 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.66 | |
| PF13292 | 270 | DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn | 99.66 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 99.65 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 99.65 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 99.65 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.65 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.65 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 99.65 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 99.65 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 99.65 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.65 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 99.65 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 99.64 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.64 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 99.64 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.64 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 99.64 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.64 | |
| PLN02573 | 578 | pyruvate decarboxylase | 99.64 | |
| PLN02470 | 585 | acetolactate synthase | 99.64 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 99.63 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.63 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m | 99.63 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 99.62 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.62 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 99.62 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 99.62 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru | 99.61 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 99.61 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 99.61 | |
| PRK09628 | 277 | oorB 2-oxoglutarate-acceptor oxidoreductase subuni | 99.61 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.6 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 99.6 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 99.6 | |
| PRK05778 | 301 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.59 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 99.59 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.59 | |
| PRK11869 | 280 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.58 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 99.56 | |
| PRK11866 | 279 | 2-oxoacid ferredoxin oxidoreductase subunit beta; | 99.56 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 99.54 | |
| PRK11867 | 286 | 2-oxoglutarate ferredoxin oxidoreductase subunit b | 99.52 | |
| TIGR02177 | 287 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta | 99.51 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 99.49 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyroph | 99.44 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 99.38 | |
| PRK11865 | 299 | pyruvate ferredoxin oxidoreductase subunit beta; P | 99.36 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.35 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 99.19 | |
| PF09364 | 379 | XFP_N: XFP N-terminal domain; InterPro: IPR018970 | 99.13 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase | 99.11 | |
| KOG1184 | 561 | consensus Thiamine pyrophosphate-requiring enzyme | 99.03 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and me | 99.02 | |
| COG3960 | 592 | Glyoxylate carboligase [General function predictio | 99.01 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and relate | 98.72 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabo | 98.5 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 98.27 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), | 98.0 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car | 97.99 | |
| PRK13030 | 1159 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 97.35 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of | 97.24 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 97.23 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain o | 97.22 | |
| PRK09193 | 1165 | indolepyruvate ferredoxin oxidoreductase; Validate | 97.21 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | 97.14 | |
| cd07034 | 160 | TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi | 96.91 | |
| PRK13029 | 1186 | 2-oxoacid ferredoxin oxidoreductase; Provisional | 96.88 | |
| PF02776 | 172 | TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter | 96.81 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom | 96.79 | |
| TIGR03845 | 157 | sulfopyru_alph sulfopyruvate decarboxylase, alpha | 96.75 | |
| cd07037 | 162 | TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- | 96.11 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 95.54 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 95.45 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 95.44 | |
| PRK07119 | 352 | 2-ketoisovalerate ferredoxin reductase; Validated | 95.42 | |
| PRK08659 | 376 | 2-oxoglutarate ferredoxin oxidoreductase subunit a | 95.41 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 95.28 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 95.1 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 95.08 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 95.05 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 95.03 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 95.02 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 94.96 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai | 94.96 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi | 94.93 | |
| PRK08366 | 390 | vorA 2-ketoisovalerate ferredoxin oxidoreductase s | 94.88 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 94.81 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 94.76 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 94.73 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 94.69 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 94.69 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 94.68 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 94.67 | |
| PRK07586 | 514 | hypothetical protein; Validated | 94.63 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 94.61 | |
| PLN02470 | 585 | acetolactate synthase | 94.58 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 94.54 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 94.43 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 94.41 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 94.39 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 94.38 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 94.34 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 94.32 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 94.26 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 94.25 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 94.14 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 94.09 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 94.07 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 94.03 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate deca | 93.96 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.95 | |
| PF01855 | 230 | POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta | 93.93 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subuni | 93.63 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 93.54 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 93.49 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 93.39 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 93.31 | |
| TIGR03710 | 562 | OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s | 93.23 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 93.23 | |
| PRK09622 | 407 | porA pyruvate flavodoxin oxidoreductase subunit al | 93.18 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 93.05 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 93.04 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 92.94 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 92.87 | |
| PRK08367 | 394 | porA pyruvate ferredoxin oxidoreductase subunit al | 92.66 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 92.62 | |
| TIGR00204 | 617 | dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s | 92.36 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 92.31 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 92.12 | |
| PLN02573 | 578 | pyruvate decarboxylase | 92.1 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding | 92.1 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 91.79 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 91.77 | |
| PF02779 | 178 | Transket_pyr: Transketolase, pyrimidine binding do | 91.26 | |
| TIGR00232 | 653 | tktlase_bact transketolase, bacterial and yeast. T | 91.17 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 90.52 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 90.31 | |
| PTZ00089 | 661 | transketolase; Provisional | 90.14 | |
| PRK12571 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 90.0 | |
| PRK05444 | 580 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 89.91 | |
| PLN02683 | 356 | pyruvate dehydrogenase E1 component subunit beta | 89.22 | |
| PLN02234 | 641 | 1-deoxy-D-xylulose-5-phosphate synthase | 88.99 | |
| PLN02225 | 701 | 1-deoxy-D-xylulose-5-phosphate synthase | 88.84 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 88.72 | |
| PLN02582 | 677 | 1-deoxy-D-xylulose-5-phosphate synthase | 88.5 | |
| PRK05899 | 624 | transketolase; Reviewed | 88.23 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 87.11 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and relate | 86.96 | |
| KOG4166 | 675 | consensus Thiamine pyrophosphate-requiring enzyme | 86.88 | |
| COG4032 | 172 | Predicted thiamine-pyrophosphate-binding protein [ | 86.72 | |
| PLN02790 | 654 | transketolase | 86.63 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provision | 86.55 | |
| PRK12753 | 663 | transketolase; Reviewed | 86.34 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and met | 84.98 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 84.39 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 83.8 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 83.59 | |
| PRK12754 | 663 | transketolase; Reviewed | 82.75 |
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-78 Score=558.77 Aligned_cols=275 Identities=40% Similarity=0.662 Sum_probs=265.4
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCc-e
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 80 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~-~ 80 (293)
|+||+||||+++|++|+++.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred EEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 022717 81 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 160 (293)
Q Consensus 81 vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~ 160 (293)
++|++|||+++||.|||+||+|+.|+|||||+|+||+|+||++.+.+.....++.++.+||+|+++|||||+.+|+++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877666667779999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
+|++++|+++||+|||+.|||++|||++|||+.||+++|++.|+ .+|||.+++++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHH
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 277 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~ 277 (293)
+|+++|+++|.|+++++|++||++.|+++.+|.+.+.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999988764
|
|
| >PLN02269 Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-68 Score=498.42 Aligned_cols=261 Identities=30% Similarity=0.492 Sum_probs=250.7
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+|+|+++++|+.+++.++++.++++|.++|+|+|+|+|.|+++.+.++
T Consensus 84 ~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~ 163 (362)
T PLN02269 84 AIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVA 163 (362)
T ss_pred EEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.|||+||+|+.|+||+||||+||+|+++++...+....++++++ +++|+++|||+|+.+|+++++.
T Consensus 164 v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~ 241 (362)
T PLN02269 164 FALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKF 241 (362)
T ss_pred EEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777777777544 6899999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|+ ++|+|||+.|||++|||++|++..||+++|++.|++++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 242 A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~ 320 (362)
T PLN02269 242 AKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDD 320 (362)
T ss_pred HHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998779999999999975699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCC
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVS 265 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~ 265 (293)
++++|+++|.|+++++|+|||+++
T Consensus 321 a~~~A~~~p~P~~~~~~~~vy~~~ 344 (362)
T PLN02269 321 AVAKAKESPMPDPSELFTNVYVKG 344 (362)
T ss_pred HHHHHHhCCCCCHHHHHhhcccCC
Confidence 999999999999999999999964
|
|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=490.29 Aligned_cols=261 Identities=30% Similarity=0.448 Sum_probs=251.3
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-----
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----- 76 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----- 76 (293)
++||+||+|+++|++|+++.++|++++|+.+|+++|+++++|+.+++.++++.+++||+++|+|+|+|+|.|+++
T Consensus 74 ~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~ 153 (341)
T CHL00149 74 YVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKE 153 (341)
T ss_pred EEEcccccHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhcccccc
Confidence 689999999999999999999999999999999999999999999989999999999999999999999999886
Q ss_pred --CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 77 --KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 77 --~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
++++|+|++|||++++|.+||+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+
T Consensus 154 ~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~a 233 (341)
T CHL00149 154 VQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLA 233 (341)
T ss_pred CCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHH
Confidence 689999999999999999999999999999999999999999999887766667899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
+++++++|++++|++++|+|||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|+||++++++++++
T Consensus 234 v~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e 311 (341)
T CHL00149 234 VREVAKEAVERARQGDGPTLIEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQRE 311 (341)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999975 5799999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcccccccccCC
Q 022717 235 VRKQILHALQEAEKAEKPPISDLFTDVYDV 264 (293)
Q Consensus 235 ~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~ 264 (293)
++++|++++++|+++|.|+++++|+|||++
T Consensus 312 ~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 341 (341)
T CHL00149 312 VKIEIEQAVQFAISSPEPNISDLKKYLFAD 341 (341)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 999999999999999999999999999974
|
|
| >KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=478.19 Aligned_cols=290 Identities=66% Similarity=1.146 Sum_probs=281.9
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCC-ce
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD-AC 80 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~-~~ 80 (293)
.||++||..|++|+||+++++++.+++|+..+..+|++||+|++.++.|++..++++..++|.|+|+|+|.|+.+.+ +.
T Consensus 139 li~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac 218 (432)
T KOG1182|consen 139 LIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNAC 218 (432)
T ss_pred ccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999977655 89
Q ss_pred EEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 022717 81 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 160 (293)
Q Consensus 81 vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~ 160 (293)
+||++|||+.++|.+|.++|+|+....|+||+|-||+|+||||+++++....++.++.+||+..++|||||+.+||.|++
T Consensus 219 ~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k 298 (432)
T KOG1182|consen 219 AVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVK 298 (432)
T ss_pred EEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
+|.+++-...+|+|||++|||.++||+|||.+.||+.+|++.|.+.++||.+||+++..+|+|+++...+++++++++|.
T Consensus 299 ~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl 378 (432)
T KOG1182|consen 299 EAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVL 378 (432)
T ss_pred HHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHHHhCCCCCCCCC
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNV 291 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 291 (293)
++++.|++-++|++.++|+|||.++|.+|++|...|++.++++|++|++..
T Consensus 379 ~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~ 429 (432)
T KOG1182|consen 379 EAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKD 429 (432)
T ss_pred HHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhh
Confidence 999999999999999999999999999999999999999999999999653
|
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-67 Score=485.59 Aligned_cols=260 Identities=32% Similarity=0.546 Sum_probs=252.8
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+|+|+++++|+.++..++++.+++||+++|+|+|+|+|.|+.+++++|
T Consensus 56 ~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~v 135 (315)
T TIGR03182 56 YVITSYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVT 135 (315)
T ss_pred EEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.++|+||+|+++++|+||||+||+|+++++.+.+....+++++|++||+++++|||+|+.+|++++++
T Consensus 136 v~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~ 215 (315)
T TIGR03182 136 ACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKE 215 (315)
T ss_pred EEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||+.|||++|||++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|++
T Consensus 216 A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~ 293 (315)
T TIGR03182 216 AVERARSGKGPILLEMKTYRFRGHSMSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEE 293 (315)
T ss_pred HHHHHHccCCCEEEEEeCCcCCCCCCCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876 799999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccC
Q 022717 242 ALQEAEKAEKPPISDLFTDVYD 263 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~ 263 (293)
++++|++.|.|+++++|+|||+
T Consensus 294 a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 294 AVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred HHHHHHhCCCCCHHHHHhhccC
Confidence 9999999999999999999995
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-66 Score=477.45 Aligned_cols=253 Identities=38% Similarity=0.635 Sum_probs=231.4
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||||+++|++|+++.++|++++|+..+.+.|+. +.|+..+..++++.++++|.++|+|+|+|+|.|+.+.+.++
T Consensus 48 ~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~ 126 (300)
T PF00676_consen 48 WVFPYYRDHGHALARGIDLEEIFAELLGKAKGHGGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVV 126 (300)
T ss_dssp EEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred EEEecccchhhhhhccccccchhHHhcCcccCCCCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeE
Confidence 68999999999999999999999999999865544444 57777777889999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||+++||.|||+||+|++|+|||||||+||+|+|+|+.+.+....+++++|++||+|+++|||+|+.+|++++++
T Consensus 127 v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~ 206 (300)
T PF00676_consen 127 VCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKE 206 (300)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHH
T ss_pred EEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|+++||+|||++|||++|||++|||..||+++|++.|++.+|||.+++++|+++|++|++++++|+++++++|++
T Consensus 207 A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~ 286 (300)
T PF00676_consen 207 AVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEE 286 (300)
T ss_dssp HHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888988876789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcc
Q 022717 242 ALQEAEKAEKPPIS 255 (293)
Q Consensus 242 a~~~a~~~~~p~~~ 255 (293)
++++|+++|.|+||
T Consensus 287 a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 287 AVEFAEASPEPDPE 300 (300)
T ss_dssp HHHHHHHSHBC-G-
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999985
|
Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A .... |
| >KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-66 Score=467.10 Aligned_cols=261 Identities=31% Similarity=0.513 Sum_probs=251.9
Q ss_pred eecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEE
Q 022717 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 82 (293)
Q Consensus 3 ~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv 82 (293)
++++||||++.+.+|.++.++|+|++|+.+|+++|.|++||+..+ +|++.+|++|.|+|+++|+|+|.|+++.+.+++
T Consensus 114 iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~ 191 (394)
T KOG0225|consen 114 IITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCF 191 (394)
T ss_pred eEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEE
Confidence 678999999999999999999999999999999999999999876 599999999999999999999999999999999
Q ss_pred EEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 022717 83 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 162 (293)
Q Consensus 83 ~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a 162 (293)
++.|||+.+||.++|++|+|++|+||+||||+||.|++.|+.++....+++.+++ .| +|+++|||+|+.+|.+|.+.|
T Consensus 192 alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA 269 (394)
T KOG0225|consen 192 ALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFA 269 (394)
T ss_pred EEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888889999998 45 999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 022717 163 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242 (293)
Q Consensus 163 ~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 242 (293)
.+++++++||+++|+.|||++|||.+|+.+.||+.+|++..+.+||||..++++|++.++.|++|+++|+++++++||++
T Consensus 270 ~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdea 349 (394)
T KOG0225|consen 270 KKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEA 349 (394)
T ss_pred HHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988999999999998878999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcccccccccCCCCc
Q 022717 243 LQEAEKAEKPPISDLFTDVYDVSPS 267 (293)
Q Consensus 243 ~~~a~~~~~p~~~~~~~~v~~~~~~ 267 (293)
+++|+++|.|++++||+|||...+.
T Consensus 350 v~~A~~~p~p~~~eL~~dvy~~~~~ 374 (394)
T KOG0225|consen 350 VAFATASPEPEPSELFTDVYVKGTG 374 (394)
T ss_pred HHHhhcCCCCCHHHHHHHhhccCCC
Confidence 9999999999999999999987543
|
|
| >PLN02374 pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-65 Score=486.42 Aligned_cols=263 Identities=27% Similarity=0.443 Sum_probs=252.3
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-----
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----- 76 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----- 76 (293)
++|++||+|+++|++|+++.++|+|++|+.+|++.|+++++|+.+++.++++.+++||+++|+|+|+|+|.|+++
T Consensus 140 ~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~ 219 (433)
T PLN02374 140 SVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKE 219 (433)
T ss_pred EEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 77 --KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 77 --~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
++++|+|++|||++++|.|||+||+|++|+|||||||+||+|+++++...+...+++++++++||+++++|||+|+.+
T Consensus 220 ~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~a 299 (433)
T PLN02374 220 ESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLK 299 (433)
T ss_pred cCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHH
Confidence 588999999999999999999999999999999999999999999887777667899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
|++++++|++++|++++|+|||+.|||++|||++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++|+++
T Consensus 300 v~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~ 377 (433)
T PLN02374 300 VREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKK 377 (433)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999865 699999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcccccccccCCCC
Q 022717 235 VRKQILHALQEAEKAEKPPISDLFTDVYDVSP 266 (293)
Q Consensus 235 ~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~ 266 (293)
++++|++++++|+++|.|+++++|+|||+++.
T Consensus 378 ~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~~ 409 (433)
T PLN02374 378 IDEVVEDAVEFADASPLPPRSQLLENVFADPK 409 (433)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhccccCCc
Confidence 99999999999999999999999999999653
|
|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-64 Score=469.55 Aligned_cols=265 Identities=43% Similarity=0.697 Sum_probs=251.5
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++|++||+|+++|++|+++.++|++++|+.+| +. ..+..++++.+++||+++|.|+|+|+|.|+.+++++|
T Consensus 77 ~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~-----~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~v 147 (341)
T TIGR03181 77 WVFPSYRDHAAMLARGVPLVEILLYWRGDERG----SW-----DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVA 147 (341)
T ss_pred EEEcchhhHHHHHHcCCCHHHHHHHhcCcCcC----CC-----CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEE
Confidence 68999999999999999999999999998754 21 1356889999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.++|+||+|++|+||+||||+||+|+++++...+...+++++++++||+++++|||+|+.+|+++++.
T Consensus 148 v~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 227 (341)
T TIGR03181 148 VTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKE 227 (341)
T ss_pred EEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776666678999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||++|||++|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++
T Consensus 228 A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~ 306 (341)
T TIGR03181 228 AVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAE 306 (341)
T ss_pred HHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCccHHHHHHHH
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSL 276 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~ 276 (293)
++++|+++|.|+++++|+|||++.||+|++|+++|
T Consensus 307 a~~~a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 307 AVAEALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHHHHHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 99999999999999999999999999999998764
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=446.76 Aligned_cols=244 Identities=42% Similarity=0.715 Sum_probs=236.3
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+++|+++++|+..+..++++.+|+||+++|+|+|+|+|.|+.+++++|
T Consensus 50 ~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~v 129 (293)
T cd02000 50 WVFPTYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVA 129 (293)
T ss_pred EEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
||++|||++++|.++|+|++|++++||+||||+||+|+++++.+.+.+.+++++++++||+++++|||+|++++++++++
T Consensus 130 v~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~ 209 (293)
T cd02000 130 VCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKE 209 (293)
T ss_pred EEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877766678999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||+.|||.+|||++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|++
T Consensus 210 A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~ 288 (293)
T cd02000 210 AVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEE 288 (293)
T ss_pred HHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHH
Q 022717 242 ALQEA 246 (293)
Q Consensus 242 a~~~a 246 (293)
++++|
T Consensus 289 a~~~a 293 (293)
T cd02000 289 AVEFA 293 (293)
T ss_pred HHHhC
Confidence 98865
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=444.25 Aligned_cols=286 Identities=15% Similarity=0.161 Sum_probs=249.5
Q ss_pred Eeec-CCCchHHHHH--cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----CCc-----ccccccccCccHHHH
Q 022717 2 TTLS-SLREPGVLLW--RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----HNY-----FTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~-~yR~~~~~l~--~G~~~~~~~~~~~g~~--~~~~~G~~~~~h~~~~~-----~~~-----~~~~g~lG~~lp~A~ 66 (293)
++++ +||||++.|+ +|+++.++|+||+|+. ++.+.++.+.+|++... .+. ...++++|.+.|+|+
T Consensus 245 ~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~ 324 (924)
T PRK09404 245 IVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVE 324 (924)
T ss_pred EEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeeh
Confidence 4677 6999999999 5999999999999987 33333334566666543 111 123689999999999
Q ss_pred HHHHHhhhcCCC------ceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCcccHHHH
Q 022717 67 GAAYALKMDRKD------ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 67 G~A~a~k~~~~~------~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
|+|+|.|+++.+ .++||++||||+ +||.|||+||+|++|++| +||||+||+|+++|+...+.+...++++
T Consensus 325 G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~ 404 (924)
T PRK09404 325 GSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDV 404 (924)
T ss_pred hHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHH
Confidence 999999998877 899999999998 799999999999999997 9999999999999998877777788999
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHH
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 216 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~ 216 (293)
|++||+|+++|||+|+++|+.+++.|++++|+++||+|||++|||++|||++|+|. ||+++|++.|++.+||+.+|+++
T Consensus 405 Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~ 483 (924)
T PRK09404 405 AKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADK 483 (924)
T ss_pred HeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875 99999999998668999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCC----------CCccHHHHHHHHHHHHHhCCCC
Q 022717 217 IESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV----------SPSNLREQEHSLRETIKKHPQD 286 (293)
Q Consensus 217 L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~p~~ 286 (293)
|+++|++|++++++|+++++++|++++++|++. .+.+.+..+|.. .+....+.++.+.+.+...|++
T Consensus 484 Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~ 560 (924)
T PRK09404 484 LVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEG 560 (924)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999976 245566666641 1233456688888899999999
Q ss_pred CCCCC
Q 022717 287 YPSNV 291 (293)
Q Consensus 287 ~~~~~ 291 (293)
|++|.
T Consensus 561 f~~h~ 565 (924)
T PRK09404 561 FKVHP 565 (924)
T ss_pred CcccH
Confidence 99985
|
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=435.49 Aligned_cols=289 Identities=17% Similarity=0.141 Sum_probs=253.0
Q ss_pred EeecC-CCchHHHHH--cCCCHHHHHHHhhcCCCC-CCCCCCC-ccccCC-----------CCCCcccccccccCccHHH
Q 022717 2 TTLSS-LREPGVLLW--RGFSMQEFANQCFGNKAD-YGKGRQM-PIHYGS-----------NKHNYFTVSSTIATQLPHA 65 (293)
Q Consensus 2 ~~~~~-yR~~~~~l~--~G~~~~~~~~~~~g~~~~-~~~G~~~-~~h~~~-----------~~~~~~~~~g~lG~~lp~A 65 (293)
+++++ ||||++.|+ +|++++++|++|.|+..+ .+.|+|. .+|++. ...++.+++|+|+.+.|+|
T Consensus 245 ~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva 324 (929)
T TIGR00239 245 VVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVV 324 (929)
T ss_pred EEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchh
Confidence 45666 999999999 999999999999998765 3347765 589984 2345677899999999999
Q ss_pred HHHHHHhhhcCC------CceEEEEeCcccc-cchHHHHHHHHHhhcCCCE---EEEEEeCCccccccccCccCcccHHH
Q 022717 66 VGAAYALKMDRK------DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVV 135 (293)
Q Consensus 66 ~G~A~a~k~~~~------~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpv---i~vi~NN~~~~~~~~~~~~~~~d~~~ 135 (293)
+|.|+|.|+++. +.++||++|||++ +||.|||+||+|++|++|+ ||||+||+|+++|+...+.+...+++
T Consensus 325 ~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd 404 (929)
T TIGR00239 325 IGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSD 404 (929)
T ss_pred hhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHH
Confidence 999999998765 5789999999997 8999999999999999996 99999999999998777766678899
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHH
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRK 215 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~ 215 (293)
+|++||+|+++|||+|+++|+.+++.|++++|+++||+|||++|||++|||++|+|..||+ ++++.|++.+||+.+|++
T Consensus 405 ~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~ 483 (929)
T TIGR00239 405 LAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYAD 483 (929)
T ss_pred HheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988998 678888766899999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc--c---ccccccC--CCCccHHHHHHHHHHHHHhCCCCCC
Q 022717 216 WIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS--D---LFTDVYD--VSPSNLREQEHSLRETIKKHPQDYP 288 (293)
Q Consensus 216 ~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~--~---~~~~v~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 288 (293)
+|+++|++|++++++|+++++++|+++++.++..+.|.+. . +..+.+. ..+....+.++.|.+.+.+.|++|.
T Consensus 484 ~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~ 563 (929)
T TIGR00239 484 KLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVE 563 (929)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCcc
Confidence 9999999999999999999999999999999876655432 1 2222111 1345567889999999999999999
Q ss_pred CCC
Q 022717 289 SNV 291 (293)
Q Consensus 289 ~~~ 291 (293)
+|.
T Consensus 564 ~h~ 566 (929)
T TIGR00239 564 MHS 566 (929)
T ss_pred ccH
Confidence 885
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. |
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=343.79 Aligned_cols=195 Identities=20% Similarity=0.222 Sum_probs=178.7
Q ss_pred EeecC-CCchHHHHH--cCCCHHHHHHHhhcCCC---CCCCCCCCccccCCCC-----------CCcccccccccCccHH
Q 022717 2 TTLSS-LREPGVLLW--RGFSMQEFANQCFGNKA---DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPH 64 (293)
Q Consensus 2 ~~~~~-yR~~~~~l~--~G~~~~~~~~~~~g~~~---~~~~G~~~~~h~~~~~-----------~~~~~~~g~lG~~lp~ 64 (293)
+++++ ||||+++|+ +|++++++|+|+.|+.+ +.+.++++++|++... .++++++|++|.++|+
T Consensus 42 ~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pv 121 (265)
T cd02016 42 VVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPV 121 (265)
T ss_pred EEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCe
Confidence 46777 999999999 99999999999999887 4445778899998764 4567789999999999
Q ss_pred HHHHHHHhhhcC-----CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCcccHHH
Q 022717 65 AVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVV 135 (293)
Q Consensus 65 A~G~A~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~~d~~~ 135 (293)
|+|+|+|.|+++ .+.++||++|||++ +||.|||+||+|++|++| +||||+||+|+++|+.+.+.+..++++
T Consensus 122 a~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~ 201 (265)
T cd02016 122 VMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTD 201 (265)
T ss_pred ehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHH
Confidence 999999999987 47899999999996 699999999999999998 999999999999999988877888999
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCC
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP 196 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~ 196 (293)
+|++||+|+++|||+|+++|++++++|++++|++++|+|||++|||++|||++|+|..++|
T Consensus 202 ~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~p~~t~p 262 (265)
T cd02016 202 VAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPSFTQP 262 (265)
T ss_pred HHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999998865443
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=302.91 Aligned_cols=289 Identities=17% Similarity=0.151 Sum_probs=235.8
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCCCC-----------CcccccccccCccHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSNKH-----------NYFTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~-~~G~~-~~~h~~~~~~-----------~~~~~~g~lG~~lp~A~ 66 (293)
.|-..|||+.+.|+ .|++..++|.||-|+.... ..|+| +.+|++.... ..-.++++|.+.-|+.-
T Consensus 550 vigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVle 629 (1228)
T PRK12270 550 VIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLE 629 (1228)
T ss_pred EecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhh
Confidence 45568999999999 7999999999999987543 34766 6889876421 11234689999999999
Q ss_pred HHHHHhhhcC------CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCcccHHHH
Q 022717 67 GAAYALKMDR------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 67 G~A~a~k~~~------~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
|+..|++..- -....|+++||++| +||.++|+||+|.++++| +|+||.||+++++|......++....++
T Consensus 630 GivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ 709 (1228)
T PRK12270 630 GIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDV 709 (1228)
T ss_pred hhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHH
Confidence 9999988532 24568999999997 899999999999999998 9999999999999987766666677899
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHH
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 216 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~ 216 (293)
|+++++|+++|||+||++|.++++.|+++++++++|++|++.|||.+||+++|||++..| ..++.....+..-+.|.+.
T Consensus 710 ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP-~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 710 AKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQP-LMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred HhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCc-hhhhhhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875333 2444433233445789999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc---ccc-ccc--cCCCCccHHHHHHHHHHHHHhCCCCCCCC
Q 022717 217 IESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS---DLF-TDV--YDVSPSNLREQEHSLRETIKKHPQDYPSN 290 (293)
Q Consensus 217 L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~---~~~-~~v--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 290 (293)
|+.+|.+|++|++++.++++.++++++...++....+++ ..- +.. -...+....+.++.+.+.....|++|++|
T Consensus 789 Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~H 868 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVH 868 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccC
Confidence 999999999999999999999999999988765332221 111 111 11134556888999999999999999998
Q ss_pred C
Q 022717 291 V 291 (293)
Q Consensus 291 ~ 291 (293)
.
T Consensus 869 p 869 (1228)
T PRK12270 869 P 869 (1228)
T ss_pred h
Confidence 5
|
|
| >KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=250.11 Aligned_cols=288 Identities=14% Similarity=0.118 Sum_probs=239.3
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCC-CccccCCCC---C---------CcccccccccCccHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQ-MPIHYGSNK---H---------NYFTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~G~~-~~~h~~~~~---~---------~~~~~~g~lG~~lp~A~ 66 (293)
++-..|||+.+.|+ .-.+++++|.+|.|.. ....|+| +.+|++... . ..+.++++|.+.-|+.+
T Consensus 306 viGMpHRGRLNvL~NVvRKpl~qIfseF~g~~-~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~ 384 (1017)
T KOG0450|consen 306 VIGMPHRGRLNVLANVVRKPLEQIFSEFSGLE-AADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVM 384 (1017)
T ss_pred EecCCccchhHHHHHHHhhHHHHHHHhccCCC-CCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceee
Confidence 45567999999998 4589999999998843 3444666 678876521 1 13455799999999999
Q ss_pred HHHHHhhhcC-----CCceEEEEeCcccc-cchHHHHHHHHHhhcCC---CEEEEEEeCCccccccccCccCcccHHHHH
Q 022717 67 GAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKG 137 (293)
Q Consensus 67 G~A~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~l---pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a 137 (293)
|-..|.++.. .+...|.++||++| .||.++|+|.+..+-+. ..|+||.||+++++|......+++...+.|
T Consensus 385 GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDva 464 (1017)
T KOG0450|consen 385 GKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVA 464 (1017)
T ss_pred chHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHH
Confidence 9999988643 34678999999999 89999999998887664 499999999999998877766777778999
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHH
Q 022717 138 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWI 217 (293)
Q Consensus 138 ~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L 217 (293)
++.+.|.++|+++|+++|--+++-|.++...+.+.++|+++|||..||++.|.|... .+-.++.+++.+..+..|.+.|
T Consensus 465 r~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FT-QPlMYk~I~k~~~~l~~Y~ekL 543 (1017)
T KOG0450|consen 465 RVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFT-QPLMYKQIRKHKPVLQKYAEKL 543 (1017)
T ss_pred HHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcccc-chHHHHHHHcCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988654 4568888887778899999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccC--------------CCCccHHHHHHHHHHHHHhC
Q 022717 218 ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD--------------VSPSNLREQEHSLRETIKKH 283 (293)
Q Consensus 218 ~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~--------------~~~~~~~~~~~~~~~~~~~~ 283 (293)
+++|.+|++++++..+++...+++|++.++++..-...+-++.-|. +.+....+.++++...+...
T Consensus 544 l~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~ 623 (1017)
T KOG0450|consen 544 LSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSV 623 (1017)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999999999999998653332222222221 12445678899999999999
Q ss_pred CCCCCCCC
Q 022717 284 PQDYPSNV 291 (293)
Q Consensus 284 p~~~~~~~ 291 (293)
|++|.+|+
T Consensus 624 PE~F~~Hr 631 (1017)
T KOG0450|consen 624 PEGFKIHR 631 (1017)
T ss_pred Ccccchhh
Confidence 99999997
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=259.33 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=149.8
Q ss_pred cCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 5 ~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
++||+|++.|.+|.++..++.+++|+.+|.+++.+ +.|.. ..+|+.|+++|+|+|+|+|.|+++.+.+|+|+
T Consensus 70 ~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~ 141 (581)
T PRK12315 70 VSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAV 141 (581)
T ss_pred cCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 89999999999999999999999999998877766 22321 25688999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccC---------ccCcccHHHHHhhcCceEEEE-eCCCHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALA 154 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~---------~~~~~d~~~~a~a~G~~~~~V-dG~D~~~ 154 (293)
+|||++++|++||+||+|+.|++|+||||+||+|+++++... .....++..++++|||+++.| ||||+.+
T Consensus 142 iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~ 221 (581)
T PRK12315 142 IGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIES 221 (581)
T ss_pred ECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHH
Confidence 999999999999999999999999999999999999977642 222345678999999999998 9999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
+++++++|. +.++|++|+++|+|..|..
T Consensus 222 l~~a~~~a~----~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 222 LIEAFKEVK----DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHHHHHHH----hCCCCEEEEEEeecCCCCC
Confidence 999998865 4689999999999998854
|
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=245.01 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=232.7
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC----------CCcccccccccCccHHHHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK----------HNYFTVSSTIATQLPHAVGAA 69 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~----------~~~~~~~g~lG~~lp~A~G~A 69 (293)
++-..|||+.+.|. .|++++.+|+||.|+......-+.+.+|++... .....++++|....|+..|.+
T Consensus 232 viGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~v 311 (906)
T COG0567 232 VIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSV 311 (906)
T ss_pred EecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcch
Confidence 45568999999998 899999999999986543222223677876532 112234799999999999999
Q ss_pred HHhhhcCC-----CceEEEEeCcccc-cchHHHHHHHHHhhcC--C-CEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 70 YALKMDRK-----DACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 70 ~a~k~~~~-----~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~--l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.|.+.... ....+.++||.++ +||.+.|+||+...-+ . +.+.||.||+.+++|......+.+...+.|+.+
T Consensus 312 Ra~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~ 391 (906)
T COG0567 312 RAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMI 391 (906)
T ss_pred HhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhcc
Confidence 99886532 2456799999999 8999999999998865 4 799999999999998865555556667889999
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 220 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~ 220 (293)
++|+++|+|.||+++..+.+.|++++..++++++|+..|||.+||+++|+|...+| ..++.+++...+...+.+.|+++
T Consensus 392 ~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP-~mY~~I~~h~t~r~~ya~~Lv~~ 470 (906)
T COG0567 392 EAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQP-LMYQKIKKHPTVRKLYADKLIAE 470 (906)
T ss_pred CCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCH-HHHHHHhcCCChhhhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999986554 46777776788899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCC---------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 022717 221 GWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV---------SPSNLREQEHSLRETIKKHPQDYPSNV 291 (293)
Q Consensus 221 g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~~ 291 (293)
|++|+++.+.+.++++..++..+...+... ..+.+...|.. .+....+.++.|...+...|++|..|.
T Consensus 471 gvis~~~~~~~~~~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~ 547 (906)
T COG0567 471 GVISEEEADELVNDYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHP 547 (906)
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhH
Confidence 999999999999999999988877766544 11122222211 233456788999999999999999985
|
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-27 Score=211.94 Aligned_cols=168 Identities=26% Similarity=0.297 Sum_probs=140.5
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCC-cccccccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc
Q 022717 13 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 91 (293)
Q Consensus 13 ~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~-~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~ 91 (293)
+...|+-+.+-+..+.. .|+.++.|+.....+ +...+|++|+++|.|+|+|+|.++.+++++|+|++|||+++
T Consensus 67 l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~ 140 (255)
T cd02012 67 LALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQ 140 (255)
T ss_pred HHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECccccc
Confidence 33467544444444421 355677787765443 34457999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC
Q 022717 92 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 170 (293)
Q Consensus 92 ~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~ 170 (293)
+|.++|++++|+.++|| +++|++||+|+++.+........++.+++++|||+++.|||||++++.+++++|.+. .+
T Consensus 141 ~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~ 217 (255)
T cd02012 141 EGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KG 217 (255)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CC
Confidence 99999999999999996 999999999999877766666789999999999999999999999999999988752 27
Q ss_pred CcEEEEEEeecCCCCCCCC
Q 022717 171 RPILIEALTYRVGHHTTSD 189 (293)
Q Consensus 171 gP~lIe~~t~R~~gHs~~D 189 (293)
+|++|+++|.+..||+...
T Consensus 218 ~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 218 KPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CCEEEEEEeecccccCccC
Confidence 8999999999999998544
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=227.11 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=221.2
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCC---CCCCccccCCC----------CCCcccccccccCccHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADYGK---GRQMPIHYGSN----------KHNYFTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~---G~~~~~h~~~~----------~~~~~~~~g~lG~~lp~A~ 66 (293)
++-..|||+.++|. ..++|..||..+.|....+-. -+.+-+|+.+. ....+++++++.+..|+|+
T Consensus 214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAm 293 (913)
T KOG0451|consen 214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAM 293 (913)
T ss_pred EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhh
Confidence 56678999999988 789999999999998776421 11223344331 1234667899999999999
Q ss_pred HHHHHhhhcC--------------CCceEEEEeCcccc-cchHHHHHHHHHhhc--CC-CEEEEEEeCCccccccccCcc
Q 022717 67 GAAYALKMDR--------------KDACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQF 128 (293)
Q Consensus 67 G~A~a~k~~~--------------~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~--~l-pvi~vi~NN~~~~~~~~~~~~ 128 (293)
|-+.+++... .....+.++|||+| .||.++|+++++-.- .+ ..+.+|.||+.+++++.+...
T Consensus 294 GKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGR 373 (913)
T KOG0451|consen 294 GKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGR 373 (913)
T ss_pred cchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccc
Confidence 9999877531 12346778999998 899999999998664 45 489999999999999988777
Q ss_pred CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCC
Q 022717 129 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQD 208 (293)
Q Consensus 129 ~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~d 208 (293)
++....++|+++++++++|+|.||++|.++.+-|++|-|++.+.+||+..|||.+||++.|||+ |.++-.++..+ +|.
T Consensus 374 Ss~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~v~-aRe 451 (913)
T KOG0451|consen 374 SSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKEVE-ARE 451 (913)
T ss_pred cchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHHHH-hhh
Confidence 7667789999999999999999999999999999999999999999999999999999999985 56664444443 344
Q ss_pred cH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCC---CCccHH--------HHHHHH
Q 022717 209 PV-TRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV---SPSNLR--------EQEHSL 276 (293)
Q Consensus 209 Pi-~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~---~~~~~~--------~~~~~~ 276 (293)
.+ ..|.++|+++|++|++++++++++..+.+.+.++.+..+.+|+. -|+.-|.. .|..+. .-+..+
T Consensus 452 SvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~--~~~~~W~gf~qapk~it~WdTGv~~dLLrfi 529 (913)
T KOG0451|consen 452 SVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPS--YFEKQWTGFQQAPKEITYWDTGVDYDLLRFI 529 (913)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCch--hhHHhhhhhccChhhhcccccCcchHHHHHh
Confidence 44 45889999999999999999999999999999988887655442 34443432 222111 122334
Q ss_pred HHHHHhCCCCCCCCC
Q 022717 277 RETIKKHPQDYPSNV 291 (293)
Q Consensus 277 ~~~~~~~p~~~~~~~ 291 (293)
...--+.|+||++|.
T Consensus 530 G~~SV~vPedf~~H~ 544 (913)
T KOG0451|consen 530 GQQSVTVPEDFNIHP 544 (913)
T ss_pred ccCceecchhccccH
Confidence 444457899998873
|
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=202.67 Aligned_cols=160 Identities=26% Similarity=0.307 Sum_probs=140.6
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc
Q 022717 13 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 91 (293)
Q Consensus 13 ~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~ 91 (293)
+..+|+-+++-+..+ ++ .|+-+++|+....++.+. ++|+||+++++|+|+|++.|+++.+..|++++|||++.
T Consensus 81 Lae~G~~p~eeL~~~-~~-----~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 81 LAEKGYFPEEELETF-RR-----IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred HHHcCCCCHHHHHHh-cc-----CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 344898777777655 32 467789999876665555 58999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC
Q 022717 92 EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 170 (293)
Q Consensus 92 ~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~ 170 (293)
+|.+|||+.+|+.|+| ++|.||+-|+.+++..+.+..+..++.+++++|||++++|||||++++.+|+.++.. ..+
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~ 231 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKG 231 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCC
Confidence 9999999999999999 699999999999999999888889999999999999999999999999998887764 134
Q ss_pred CcEEEEEEeec
Q 022717 171 RPILIEALTYR 181 (293)
Q Consensus 171 gP~lIe~~t~R 181 (293)
+|.+|.+.|.+
T Consensus 232 rP~~IIa~Tvk 242 (243)
T COG3959 232 RPTVIIAKTVK 242 (243)
T ss_pred CCeEEEEeccc
Confidence 99999999854
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=227.88 Aligned_cols=161 Identities=26% Similarity=0.338 Sum_probs=137.9
Q ss_pred cCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcC----------CCceEE
Q 022717 16 RGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDR----------KDACAV 82 (293)
Q Consensus 16 ~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv 82 (293)
.|+ +.+++. .|+ + .|+..++|+.....+.+ ..+|++|+|++.|+|+|+|.|+.+ .+.+|+
T Consensus 78 ~G~~~~~e~L~-~fr-~-----~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~ 150 (663)
T PRK12754 78 TGYDLPMEELK-NFR-Q-----LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTY 150 (663)
T ss_pred cCCCCCHHHHH-Hhc-c-----CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEE
Confidence 674 665543 443 2 35667889887555555 458999999999999999999875 378999
Q ss_pred EEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHH
Q 022717 83 TYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 160 (293)
Q Consensus 83 ~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~ 160 (293)
|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||++++ |||||++++.+|++
T Consensus 151 ~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~ 229 (663)
T PRK12754 151 AFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVE 229 (663)
T ss_pred EEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHH
Confidence 99999999999999999999999998 89999999999999988776 57999999999999999 89999999999988
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
+|.+. .++|++|+++|++..|.+.
T Consensus 230 ~a~~~---~~~Pt~I~~~T~~g~G~~~ 253 (663)
T PRK12754 230 EARAV---TDKPSLLMCKTIIGFGSPN 253 (663)
T ss_pred HHHhc---CCCCEEEEEEeeeccCccc
Confidence 87642 5889999999999999874
|
|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=201.54 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=129.5
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc-ccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|...+++...|. . +-+.++.. .|+ ++.|+.....+. ...+|++|+++|+|+|+|+|.|+++.+++|+|+
T Consensus 33 gH~~~~~~~~~g~-~-~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~ 103 (195)
T cd02007 33 GHQAYPHKILTGR-R-DQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAV 103 (195)
T ss_pred ccHHHHHHHHHCC-H-HHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4555555555665 2 23444431 244 777876544333 346899999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAR 163 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~ 163 (293)
+|||++++|++||+|++|+.+++|+++||+||+|++++++. +..++++++||.... |||+|++++.+++++|.
T Consensus 104 ~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~ 177 (195)
T cd02007 104 IGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK 177 (195)
T ss_pred EcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH
Confidence 99999999999999999999988999999999999987664 467788899999986 99999999999888875
Q ss_pred HHhhccCCcEEEEEEeecCCC
Q 022717 164 EMAIGEGRPILIEALTYRVGH 184 (293)
Q Consensus 164 ~~~r~~~gP~lIe~~t~R~~g 184 (293)
+ .++|++|++.|.+..|
T Consensus 178 ~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 178 D----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred h----CCCCEEEEEEEecccC
Confidence 4 6899999999988665
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=227.24 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=136.3
Q ss_pred HcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcC----------CCceE
Q 022717 15 WRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDR----------KDACA 81 (293)
Q Consensus 15 ~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~v 81 (293)
..|+ +.+++ ..|+. .|+.+++|+.....+.+ ..+|++|++++.|+|+|+|.|+.+ .+.+|
T Consensus 73 ~~G~~~~~e~L-~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v 145 (653)
T TIGR00232 73 LTGYDLSIEDL-KQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYT 145 (653)
T ss_pred HcCCCCCHHHH-Hhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEE
Confidence 3785 55554 44432 35667889877444444 458999999999999999999763 47889
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAV 159 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~ 159 (293)
+|++|||++++|.+||++++|+.++|| +|+||+||+|++++++.... ..++.+++++|||++++| ||||+.++.+|+
T Consensus 146 ~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~ 224 (653)
T TIGR00232 146 YVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAI 224 (653)
T ss_pred EEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 999999999999999999999999998 89999999999999988776 578999999999999999 999999999888
Q ss_pred HHHHHHhhcc-CCcEEEEEEeecCCCCCCC
Q 022717 160 HAAREMAIGE-GRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 160 ~~a~~~~r~~-~gP~lIe~~t~R~~gHs~~ 188 (293)
++|.+ . ++|++|+++|+|.+|.+..
T Consensus 225 ~~a~~----~~~~P~~I~~~T~~g~G~~~~ 250 (653)
T TIGR00232 225 EEAKA----SKDKPTLIEVTTTIGFGSPNK 250 (653)
T ss_pred HHHHh----CCCCCEEEEEEeeecccCccc
Confidence 77643 4 4899999999999998643
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=225.82 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=138.9
Q ss_pred HHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCC-CcccccccccCccHHHHHHHHHhhhcCC----------C
Q 022717 12 VLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRK----------D 78 (293)
Q Consensus 12 ~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~~----------~ 78 (293)
++...|. +.++ +..|+. .|+..++|+..... ++...+|++|++++.|+|+|+|.|+.+. +
T Consensus 74 ~l~~~G~~~~~e~-L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~ 146 (663)
T PRK12753 74 LLHLTGYDLPIEE-LKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVD 146 (663)
T ss_pred HHHHhCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccC
Confidence 3444674 4444 444532 35556788876544 4445689999999999999999998652 6
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHH
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIY 156 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~ 156 (293)
.+|+|++|||++++|.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||+++. |||||+.+++
T Consensus 147 ~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~ 225 (663)
T PRK12753 147 HYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIK 225 (663)
T ss_pred CEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHH
Confidence 899999999999999999999999999997 89999999999999887765 57899999999999995 9999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 189 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~D 189 (293)
+++++|.+ ..++|++|+++|++.+|++...
T Consensus 226 ~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e 255 (663)
T PRK12753 226 EAILEAQS---VKDKPSLIICRTIIGFGSPNKA 255 (663)
T ss_pred HHHHHHHH---CCCCeEEEEEEEeecCCCCccc
Confidence 99998875 2578999999999999998543
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=229.18 Aligned_cols=189 Identities=22% Similarity=0.213 Sum_probs=150.2
Q ss_pred CCCc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcCC---
Q 022717 6 SLRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDRK--- 77 (293)
Q Consensus 6 ~yR~---~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~--- 77 (293)
.|.. .+++...|. ...+-+..+.+ .|+..+.|+.....+.+. .+|++|++++.|+|+|+|.|+.+.
T Consensus 67 GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~ 140 (661)
T PTZ00089 67 GHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFN 140 (661)
T ss_pred cchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhcc
Confidence 4555 445556774 33333444532 244456787655444444 589999999999999999998653
Q ss_pred -------CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-e
Q 022717 78 -------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-D 148 (293)
Q Consensus 78 -------~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-d 148 (293)
+.+|+|++|||++++|.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||+++.| |
T Consensus 141 ~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~d 219 (661)
T PTZ00089 141 RPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDN 219 (661)
T ss_pred CccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcCCcEEEeCC
Confidence 7889999999999999999999999999996 89999999999999887653 578999999999999999 9
Q ss_pred CC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC---CCCChHHHHHHH
Q 022717 149 GN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 204 (293)
Q Consensus 149 G~-D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 204 (293)
|| |+.++++++++|.+. .++|++|+++|+|..||...+... .+.+++|++.++
T Consensus 220 G~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 220 GNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 99 999999999988753 368999999999999986655432 255667777765
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=223.62 Aligned_cols=183 Identities=25% Similarity=0.258 Sum_probs=145.4
Q ss_pred hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCC----------
Q 022717 10 PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRK---------- 77 (293)
Q Consensus 10 ~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~---------- 77 (293)
.+++...|. -..+-+..+.. .|+.++.|+.....+++ ..+|++|+++|.|+|+|+|.++.+.
T Consensus 76 Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~ 149 (624)
T PRK05899 76 YSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIV 149 (624)
T ss_pred HHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCc
Confidence 334556786 33333444421 23335677765433444 4589999999999999999998776
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
+++|+|++|||++++|.+||+|++|+.++|| +++|++||+|+++.+.... ...++.+++++|||++++|||||+.++.
T Consensus 150 ~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~ 228 (624)
T PRK05899 150 DHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAID 228 (624)
T ss_pred CCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHH
Confidence 7899999999999999999999999999997 9999999999998776643 3578999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCC----hHHHHHH
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP----VDEIEWW 203 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~----~~e~~~~ 203 (293)
+++++|.+ .++|++|++.|.|..||+..++...|+. +++++.+
T Consensus 229 ~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~ 275 (624)
T PRK05899 229 AAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAA 275 (624)
T ss_pred HHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHH
Confidence 99998875 4789999999999999987766555654 3455544
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=221.74 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=141.4
Q ss_pred cCCCc---hHHHHHcCC---CHHHHHHHhhcCCCCCCCCCCCccccCCCCCC-cccccccccCccHHHHHHHHHhhh---
Q 022717 5 SSLRE---PGVLLWRGF---SMQEFANQCFGNKADYGKGRQMPIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKM--- 74 (293)
Q Consensus 5 ~~yR~---~~~~l~~G~---~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~-~~~~~g~lG~~lp~A~G~A~a~k~--- 74 (293)
..|.. .+++...|. +.++ +..|+. .|+-.++|+.....+ +...+|++|++++.|+|+|+|.|+
T Consensus 54 ~GH~~~~lYa~l~~~G~~~~~~~~-l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~ 126 (654)
T PLN02790 54 AGHGCMLQYALLHLAGYDSVQMED-LKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAA 126 (654)
T ss_pred CcchHHHHHHHHHHcCCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHH
Confidence 34665 445666776 4444 455532 355567788764444 445689999999999999999995
Q ss_pred --cCC-----CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE
Q 022717 75 --DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 146 (293)
Q Consensus 75 --~~~-----~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 146 (293)
.++ +.+|+|++|||++++|.+||++|+|+.++|| +|+||+||++++++++.... ..++.+++++|||+++.
T Consensus 127 ~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~ 205 (654)
T PLN02790 127 RFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEALGWHTIW 205 (654)
T ss_pred HhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHcCCeEEE
Confidence 342 6899999999999999999999999999997 99999999999999887554 56889999999999999
Q ss_pred EeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 022717 147 VDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 190 (293)
Q Consensus 147 VdG--~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd 190 (293)
||| ||++++++++++|.+. .++|++|+++|++.+|.+...+
T Consensus 206 vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~ 248 (654)
T PLN02790 206 VKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKAN 248 (654)
T ss_pred ECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccC
Confidence 988 8999999999887642 5889999999999999874433
|
|
| >PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=205.75 Aligned_cols=150 Identities=30% Similarity=0.378 Sum_probs=122.4
Q ss_pred CCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcC----------CCceEEEEeCcccccchHHHHHHHHHhh
Q 022717 36 KGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAV 104 (293)
Q Consensus 36 ~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~ 104 (293)
.|+.+++|+.....+.+. ++|+||+|++.|+|+|+|.|+.+ -+.+|+|++|||++++|.+|||+.+|+.
T Consensus 90 ~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~ 169 (332)
T PF00456_consen 90 LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGH 169 (332)
T ss_dssp TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHH
Confidence 466678899865566665 47999999999999999998642 3678999999999999999999999999
Q ss_pred cCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 105 TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 105 ~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
++| ++|+|+++|+.++++++.... ..++.++.++|||.+++| ||||++++++|+++|.. ..++|++|.+.|...
T Consensus 170 ~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 170 YKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKG 245 (332)
T ss_dssp TT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TT
T ss_pred hCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEe
Confidence 999 599999999999998876544 468899999999999998 99999999999998864 247999999999998
Q ss_pred CCCCCCC
Q 022717 183 GHHTTSD 189 (293)
Q Consensus 183 ~gHs~~D 189 (293)
+|-+...
T Consensus 246 ~G~~~~e 252 (332)
T PF00456_consen 246 KGVPFME 252 (332)
T ss_dssp TTSTTTT
T ss_pred cCchhhc
Confidence 8875443
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A .... |
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=196.02 Aligned_cols=173 Identities=18% Similarity=0.132 Sum_probs=138.9
Q ss_pred cCCCc---hHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCCC-CC-cccccccccCccHHHHHHHHHhhh---
Q 022717 5 SSLRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM--- 74 (293)
Q Consensus 5 ~~yR~---~~~~l~~G~~~~~~~~~~~g~~~~~~~G~--~~~~h~~~~~-~~-~~~~~g~lG~~lp~A~G~A~a~k~--- 74 (293)
..|-. .+++...|+-+.+-+..|.. .|+ +.+.|+.... .+ +..++|++|.+++.|+|+|+|.|+
T Consensus 66 kGHas~~lYA~L~l~G~~~~edL~~fr~------~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a 139 (386)
T cd02017 66 QGHASPGIYARAFLEGRLTEEQLDNFRQ------EVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLED 139 (386)
T ss_pred CCcccHHHHHHHHHcCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHh
Confidence 34555 33455578544444555642 233 4666665432 33 334689999999999999999997
Q ss_pred ----cCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCc-cCcccHHHHHhhcCceEEEEe
Q 022717 75 ----DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 75 ----~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.+.+.+|+|++|||++++|.+||++++|+.++| ++|+|+++|+++++.++... ....++.+++++|||.++.||
T Consensus 140 ~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~ 219 (386)
T cd02017 140 RGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVI 219 (386)
T ss_pred hhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEe
Confidence 556889999999999999999999999999999 69999999999999888774 356799999999999999998
Q ss_pred ---------------------------------------------------------------------CCCHHHHHHHH
Q 022717 149 ---------------------------------------------------------------------GNDALAIYSAV 159 (293)
Q Consensus 149 ---------------------------------------------------------------------G~D~~~v~~a~ 159 (293)
|||+.+|.+|+
T Consensus 220 ~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~ 299 (386)
T cd02017 220 WGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAY 299 (386)
T ss_pred cCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHH
Confidence 99999999999
Q ss_pred HHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 160 HAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 160 ~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
+++... .++|++|.+.|...+|.+
T Consensus 300 ~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 300 KKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHHHhC---CCCCeEEEEeCeecCCCC
Confidence 887642 468999999999988876
|
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-24 Score=212.30 Aligned_cols=170 Identities=20% Similarity=0.217 Sum_probs=136.3
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhc-CCCceEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMD-RKDACAVT 83 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~-~~~~~vv~ 83 (293)
.|.+.+++...|. .++ +..++. .|+ +++|+.....+.+. .+|++|+++|+|+|+|+|.|+. +++++|+|
T Consensus 75 GH~~y~~~~~~g~-~~~-l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~ 145 (580)
T PRK05444 75 GHQAYPHKILTGR-RDR-FDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVA 145 (580)
T ss_pred cHHHHHHHHHhCc-HHH-hcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4555556666775 222 333321 244 67788765544444 5899999999999999999988 58899999
Q ss_pred EeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc---cCcccHHHHHhhcCceEE-EEeCCCHHHHHHHH
Q 022717 84 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAV 159 (293)
Q Consensus 84 ~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~---~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~ 159 (293)
++|||++++|++||+|++|+.+++|+++|++||+|++++++... ....++.+++++|||+++ .|||+|++++++++
T Consensus 146 i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al 225 (580)
T PRK05444 146 VIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETL 225 (580)
T ss_pred EEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998776433 233567789999999999 58999999999988
Q ss_pred HHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 160 HAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 160 ~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
+++.+ .++|++|++.|.|..|.+..
T Consensus 226 ~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 226 KNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHh----CCCCEEEEEEecCCcCCChh
Confidence 87764 57999999999999987643
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=195.01 Aligned_cols=161 Identities=25% Similarity=0.284 Sum_probs=135.9
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccc-cccccCccHHHHHHHHHhhhcC-----C-----CceEEEE
Q 022717 16 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV-SSTIATQLPHAVGAAYALKMDR-----K-----DACAVTY 84 (293)
Q Consensus 16 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~-~g~lG~~lp~A~G~A~a~k~~~-----~-----~~~vv~~ 84 (293)
..++++++.. |+. -|+-.++|+.....+.+.. +|+||+|++.|||+|+|.++.. + |..++|+
T Consensus 82 y~ls~edLk~-FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl 154 (663)
T COG0021 82 YDLSLEDLKN-FRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVL 154 (663)
T ss_pred CCCCHHHHHh-hcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEE
Confidence 3456666644 321 2555688999887777765 7999999999999999988632 2 4689999
Q ss_pred eCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAA 162 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a 162 (293)
+|||++++|+.+|+..+|+.++|. +|++.++|.++|++.+...+ ..|..+|+++|||.++ .+||||++++..|+++|
T Consensus 155 ~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~A 233 (663)
T COG0021 155 VGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEA 233 (663)
T ss_pred ecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999995 99999999999999887776 5799999999999999 57999999999999998
Q ss_pred HHHhhccCCcEEEEEEeecCCCCCC
Q 022717 163 REMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 163 ~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
.. ..++|++|+|+|.-.+|-..
T Consensus 234 k~---~~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 234 KA---STDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred Hh---cCCCCeEEEEEeeeecCCCC
Confidence 86 36799999999987766544
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=209.40 Aligned_cols=170 Identities=19% Similarity=0.177 Sum_probs=134.3
Q ss_pred cCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc--cccccccCccHHHHHHHHHhhhcCCCceEE
Q 022717 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF--TVSSTIATQLPHAVGAAYALKMDRKDACAV 82 (293)
Q Consensus 5 ~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~--~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv 82 (293)
..|...++++..|. . +-|..++. .|+ +++|+.... +.+ ..+|++|+++++|+|+|+|.|+++.+.+|+
T Consensus 68 ~GH~~Y~~~~~~G~-~-~~l~~~r~------~g~-l~g~p~~~e-~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~ 137 (617)
T TIGR00204 68 VGHQAYPHKLLTGR-R-EKFSTLRQ------KKG-LHGFPKRSE-SEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTV 137 (617)
T ss_pred cchHHHHHHHHhCc-H-HHhcchhh------cCC-cCCCCcCCC-CCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEE
Confidence 34667777777886 2 33444432 244 777876543 323 358999999999999999999999999999
Q ss_pred EEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccC------------------------cc---c-HH
Q 022717 83 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AV 134 (293)
Q Consensus 83 ~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~------------------------~~---d-~~ 134 (293)
|++|||++++|.+||++|+|+.++||+|+||+||+++++++...... .+ + +.
T Consensus 138 ~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 217 (617)
T TIGR00204 138 CVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA 217 (617)
T ss_pred EEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999999999999999999977642210 01 1 33
Q ss_pred HH--------------HhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 135 VK--------------GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 135 ~~--------------a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
++ +++|||.++ .|||||+.++.++++.+. +.++|++|+++|.|..|.+..
T Consensus 218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak----~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAK----KLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred HHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHh----cCCCCEEEEEEecCCCCCchh
Confidence 33 889999999 799999999999888665 357899999999998885543
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=179.17 Aligned_cols=136 Identities=24% Similarity=0.331 Sum_probs=116.5
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHH---HH
Q 022717 21 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HA 97 (293)
Q Consensus 21 ~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~---~E 97 (293)
+++|.+|. ..|+ +++|+.....++...+|+||+++++|+|+|+ ++++.+|+|++|||++++|.+ |+
T Consensus 34 ~~lf~qfs------~~gg-~psH~~~~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~ 102 (227)
T cd02011 34 RKLFKQFS------FPGG-IPSHAAPETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWH 102 (227)
T ss_pred HHHHHhcC------CCCC-CCCCCcccCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHH
Confidence 55777762 1233 8899987666777789999999999999974 568899999999999999996 88
Q ss_pred HHHHHhhcCC-CEEEEEEeCCccccccccCc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 022717 98 ALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 167 (293)
Q Consensus 98 al~~A~~~~l-pvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r 167 (293)
+..++..+++ .|+.|++||+|+|++++... .+..++.+++++|||+.+.|||+|++++++++++|++++|
T Consensus 103 a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 103 SNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred hhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 8888888999 49999999999999998855 4567899999999999999999999999999998887655
|
This enzyme requires divalent magnesium ions and TPP for activity. |
| >TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=192.31 Aligned_cols=165 Identities=21% Similarity=0.233 Sum_probs=136.7
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccc-ccccccCccHHHHHHHHHhhh-------cCCCceEEEEe
Q 022717 15 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT-VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYF 85 (293)
Q Consensus 15 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~-~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~ 85 (293)
..|.-.++-+..|+.-. .|+++++|+.... .+++. ++|+||.|++.|+|+|++.|+ +..+.+|+|++
T Consensus 150 l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvll 225 (885)
T TIGR00759 150 LEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFL 225 (885)
T ss_pred HcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Confidence 37855555556664311 2667777776433 33454 479999999999999999996 56788999999
Q ss_pred CcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE----------------
Q 022717 86 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V---------------- 147 (293)
|||+++||.+|||+.+|++++| ++|+||++|+.++++++..... ..++.++++++||.++.|
T Consensus 226 GDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g 305 (885)
T TIGR00759 226 GDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSG 305 (885)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCcc
Confidence 9999999999999999999999 6999999999999998876544 468999999999999999
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 148 -----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 148 -----------------------------------------------------dG~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
+|||+.+|++|++.|.+. .++|++
T Consensus 306 ~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTv 382 (885)
T TIGR00759 306 VLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTV 382 (885)
T ss_pred HHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 599999999999888753 357999
Q ss_pred EEEEeecCCCCC
Q 022717 175 IEALTYRVGHHT 186 (293)
Q Consensus 175 Ie~~t~R~~gHs 186 (293)
|.++|.+.+|.+
T Consensus 383 IlA~TvKG~G~~ 394 (885)
T TIGR00759 383 ILAKTIKGYGMG 394 (885)
T ss_pred EEEeeeecCCCC
Confidence 999999988876
|
WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. |
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=192.70 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=132.2
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccc-ccccccCccHHHHHHHHHhhhc-------CCCceEEEEeC
Q 022717 16 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT-VSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFG 86 (293)
Q Consensus 16 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~-~~g~lG~~lp~A~G~A~a~k~~-------~~~~~vv~~~G 86 (293)
.|.-.++-+..|+.- .+|++++.|+.... ..++. ++|+||.|++.|+|+|++.|+. ..+.+|+|++|
T Consensus 151 ~G~l~~e~L~~fRq~----~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llG 226 (889)
T TIGR03186 151 EGFLSDAQLAHYRQE----IAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFG 226 (889)
T ss_pred cCCCCHHHHHHhcCC----CCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEc
Confidence 785444445556432 12455555443222 33455 4799999999999999998843 23689999999
Q ss_pred cccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE-----------------
Q 022717 87 DGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV----------------- 147 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V----------------- 147 (293)
||+++||.+|||+.+|+.++| ++|+||++|+.++++++..... ..++.+++++|||.+++|
T Consensus 227 DGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~ 306 (889)
T TIGR03186 227 DGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGA 306 (889)
T ss_pred chhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchH
Confidence 999999999999999999999 6999999999999998876433 468999999999999999
Q ss_pred ----------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 022717 148 ----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPILI 175 (293)
Q Consensus 148 ----------------------------------------------------dG~D~~~v~~a~~~a~~~~r~~~gP~lI 175 (293)
+|||+.+|++|+++|.+. .++|++|
T Consensus 307 L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTvI 383 (889)
T TIGR03186 307 LARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTVI 383 (889)
T ss_pred HHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEE
Confidence 699999999999998862 4689999
Q ss_pred EEEeecCCCCCC
Q 022717 176 EALTYRVGHHTT 187 (293)
Q Consensus 176 e~~t~R~~gHs~ 187 (293)
.++|...+|-+.
T Consensus 384 la~TvkG~G~~~ 395 (889)
T TIGR03186 384 LAKTMKGFGMGA 395 (889)
T ss_pred EEEeeecCCCCc
Confidence 999999888543
|
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=193.55 Aligned_cols=171 Identities=22% Similarity=0.236 Sum_probs=130.2
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc-ccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|-..++++..|. .+-|..++. .|+ ++.|+...+... .-..++-+++++.|+|+|+|.++.+++++|+|+
T Consensus 77 GH~~Y~~~~l~g~--~~~l~~~r~------~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v 147 (641)
T PRK12571 77 GHQCYPHKILTGR--RDRFRTLRQ------KGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAV 147 (641)
T ss_pred chHHHHHHHHhCC--HHHHhhhhh------CCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4666667777775 334455532 233 566665533221 112344466789999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccccc-------CccCcccH------------------------
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA------------------------ 133 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~-------~~~~~~d~------------------------ 133 (293)
+|||++++|++||++++|+.+++|+++|++||++++++++. +......+
T Consensus 148 ~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (641)
T PRK12571 148 IGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARR 227 (641)
T ss_pred EeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999987764 11111111
Q ss_pred -----------HHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 134 -----------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 134 -----------~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
.+++++|||.++ .|||||++++.++++++.+. .++|++|+++|.+..|.+..
T Consensus 228 ~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 228 ARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred HHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchh
Confidence 378999999999 79999999999999887642 37899999999998887643
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=188.87 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=131.5
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|-..++.+..|..- -|..++. .|+ +++|+........ ..+|++|.++++|+|+|+|+++++.+..|+|+
T Consensus 135 GHqaya~~~ltgr~~--~l~t~r~------~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~v 205 (641)
T PLN02234 135 GHQSYPHKILTGRRG--KMKTIRQ------TNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSV 205 (641)
T ss_pred chhHHHHHHHHhhhh--hhccccc------CCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 355555666555421 1333321 233 6777765443333 35899999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcc------ccccccCccCc---------------ccHHHHHhhcCce
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS---------------DGAVVKGRAYGVR 143 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~------~~~~~~~~~~~---------------~d~~~~a~a~G~~ 143 (293)
+|||++++|++||||+.|+..+-++|+|+++|+.+ .+++....... .+..+++++|||.
T Consensus 206 iGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~ 285 (641)
T PLN02234 206 IGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFH 285 (641)
T ss_pred EccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCE
Confidence 99999999999999999997676899999999984 33333221111 2567899999999
Q ss_pred EE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 022717 144 SI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 190 (293)
Q Consensus 144 ~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd 190 (293)
++ .|||||++++.++++++.+. ..++|++|.++|.+..|.+...+
T Consensus 286 ~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 286 YVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred EEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 99 99999999999999877532 23589999999999998876654
|
|
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=165.73 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=161.8
Q ss_pred CCCchHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCC
Q 022717 6 SLREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 78 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~-~~~~~~~g~~~------~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~ 78 (293)
-||||++....|.++. .++.+.+|+.+ ||+.+.++.+|+.. .+....++++|.+.++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5899999999998888 88888888776 55556555555443 344555789999999999999999877655
Q ss_pred c-eEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccC-----------------ccCcccHHHHHhhc
Q 022717 79 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD-----------------QFRSDGAVVKGRAY 140 (293)
Q Consensus 79 ~-~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~-----------------~~~~~d~~~~a~a~ 140 (293)
. .|++++|||++..+.+ |+|+.|..+++|++|||.||.+.+.|-.+. .....|+.+++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999987776 999999999999999999999865432211 11235889999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC--------------CCCCh-HHHH---
Q 022717 141 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST--------------KYRPV-DEIE--- 201 (293)
Q Consensus 141 G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~--------------~Yr~~-~e~~--- 201 (293)
|++.+ +++-.|+.++.+++++|++ .+||.+|++.+.=..++...++.+ .||=. .++.
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~ 246 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENGKFKLNS 246 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECCEEEEcc
Confidence 99766 6788899999999999996 589999999762222211111000 01100 0000
Q ss_pred ---HH--HhCCCcHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022717 202 ---WW--RTTQDPVTRFRKWIESNG---WWNGDIESELRSSVRKQILHALQEAE 247 (293)
Q Consensus 202 ---~~--~~~~dPi~~~~~~L~~~g---~~~~~~~~~i~~~~~~~v~~a~~~a~ 247 (293)
.| .+.+-|+ +++|..+| .+.+++++++++++.++.+.-.+.++
T Consensus 247 ~~~~~~~~~~~~pv---~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 247 PSKTLLDKKKRKPV---EEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred CCccccccccCCCH---HHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0122354 45555554 56788888888888887766554444
|
|
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-20 Score=184.02 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=128.3
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|-..++.+..|.. +-|..++. .|+ ++.|+.... ....-.+|++|.+++.|+|+|+|.++++.+.+|+|+
T Consensus 102 GH~ay~~~~l~gr~--~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~v 172 (677)
T PLN02582 102 GHQSYPHKILTGRR--DKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAV 172 (677)
T ss_pred cchHHHHHHHHccH--HHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 46666777777752 22444421 244 777876543 333345899999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-cc--------cccccCc-------cCc------------------
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS------------------ 130 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~--------~~~~~~~-------~~~------------------ 130 (293)
+|||++++|++||+||+|+.+++|+|+||+||+. ++ +...... ..+
T Consensus 173 iGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 252 (677)
T PLN02582 173 IGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIG 252 (677)
T ss_pred ecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999996 33 1111000 000
Q ss_pred ---ccHH----------------HHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 131 ---DGAV----------------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 131 ---~d~~----------------~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
..+. .++++|||.++ .|||||++++.++++++.+. ..++|++|+++|-+..|...+
T Consensus 253 ~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 253 GPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 0111 24789999977 79999999999999888752 116899999999998887654
|
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-20 Score=161.25 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=111.9
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++..+....+. .+.+.+. ..++. ..+..++.. .++||+++|+|+|+++|. ++++|||++|
T Consensus 4 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----p~r~vv~i~G 79 (196)
T cd02013 4 MHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAA----PDRPVVAIAG 79 (196)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEEEEc
Confidence 5677777766554432 1222221 11222 223445543 589999999999998885 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccccC----------ccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD----------QFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~~----------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. .. +|.+|+++++|+++|| +|++|++....+. .....||.++|++||+++++|+ +++++
T Consensus 80 DG~f~m~-~~-eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el 155 (196)
T cd02013 80 DGAWGMS-MM-EIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDV 155 (196)
T ss_pred chHHhcc-HH-HHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHH
Confidence 9999863 44 4999999999966655 6667876432111 1235799999999999999998 79999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
..++++|++.+| .++|+|||+.+.+.
T Consensus 156 ~~al~~a~~~~~-~~~p~liev~v~~~ 181 (196)
T cd02013 156 GPALQKAIAMMA-EGKTTVIEIVCDQE 181 (196)
T ss_pred HHHHHHHHhcCC-CCCeEEEEEEeCcc
Confidence 999999987554 37899999999654
|
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=176.55 Aligned_cols=164 Identities=24% Similarity=0.281 Sum_probs=136.6
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcCC-CceEEEEeCcc
Q 022717 11 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDG 88 (293)
Q Consensus 11 ~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG 88 (293)
++....|....+=+.+|+. .|+..+.|+. ++.++.. .+|++|++++.|+|+|++.|+.+. +.+|+|++|||
T Consensus 79 a~~~l~G~~~~edl~~~Rq------~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG 151 (632)
T KOG0523|consen 79 AHWHLAGYDREEDLKNFRQ------IGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDG 151 (632)
T ss_pred HHHHHhccCcHHHHHHHHh------hCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCc
Confidence 3444567555555555643 2455677887 4456665 489999999999999999998887 89999999999
Q ss_pred cccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHH-HHhhcCceEEEEeCCCHHHHHHHHHHHHHHh
Q 022717 89 GTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMA 166 (293)
Q Consensus 89 a~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~-~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~ 166 (293)
+.++|+.|||+++|+.++| ++|+|.+||+.+++++++..+. .++.+ +.++|||.+..|||+|++++.+++.+|..
T Consensus 152 ~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~-- 228 (632)
T KOG0523|consen 152 CLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS-- 228 (632)
T ss_pred hhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh--
Confidence 9999999999999999999 5999999999999988877654 57776 99999999999999999999999999873
Q ss_pred hccCCcEEEEEEeecCCCC
Q 022717 167 IGEGRPILIEALTYRVGHH 185 (293)
Q Consensus 167 r~~~gP~lIe~~t~R~~gH 185 (293)
..++|+.|-+.|+..+|-
T Consensus 229 -~k~kpt~i~~~t~~g~G~ 246 (632)
T KOG0523|consen 229 -VKGKPTAIKATTFIGRGS 246 (632)
T ss_pred -ccCCceeeeeeeeeecCc
Confidence 358899999999887763
|
|
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=183.96 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=135.2
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC-Cccc-ccccccCccHHHHHHHHHhhh-------cCCCceEEEEe
Q 022717 15 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFT-VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYF 85 (293)
Q Consensus 15 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~-~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~ 85 (293)
..|.-.++-+..|+. .. .|.+++.|+..... .++. .+|+||.|++.|+|+|++.|+ ...+++|+|++
T Consensus 164 l~G~l~~e~L~~fR~-~~---~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~l 239 (896)
T PRK13012 164 LEGRLSEEQLDHFRQ-EI---GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFF 239 (896)
T ss_pred HcCCCCHHHHHHhcC-CC---CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEE
Confidence 367444444555642 21 25667777665443 3455 479999999999999999983 45678999999
Q ss_pred CcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE----------------
Q 022717 86 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V---------------- 147 (293)
|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.++++++||.++.|
T Consensus 240 GDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~ 319 (896)
T PRK13012 240 GDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTG 319 (896)
T ss_pred chhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCcc
Confidence 9999999999999999999999 6999999999999998876544 468999999999999999
Q ss_pred ----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 148 ----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 148 ----------d-------------------------------------------G~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
| |||+.+|++|++.|.+. .++|++
T Consensus 320 ~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~Ptv 396 (896)
T PRK13012 320 ALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTV 396 (896)
T ss_pred HHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 8 99999999999988752 467999
Q ss_pred EEEEeecCCCCC
Q 022717 175 IEALTYRVGHHT 186 (293)
Q Consensus 175 Ie~~t~R~~gHs 186 (293)
|.++|.+.+|-+
T Consensus 397 Ila~TvkG~G~~ 408 (896)
T PRK13012 397 ILAKTKKGYGMG 408 (896)
T ss_pred EEEEeeecCCCC
Confidence 999999988865
|
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=155.32 Aligned_cols=113 Identities=22% Similarity=0.279 Sum_probs=92.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccccC-------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~~------- 126 (293)
.|+||+++|+|+|+++|. ++++|+|++|||++++. .++|++|++++||+++|| +||+|++....+.
T Consensus 47 ~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~ 120 (172)
T cd02004 47 FGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGL 120 (172)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCC
Confidence 589999999999999886 68899999999999863 466999999999966555 5557887643322
Q ss_pred ----ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 ----~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.+++++||+++.+|+ +++++.++++++.+ .++|++||+.+
T Consensus 121 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 121 PVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1235789999999999999998 68888888888765 58999999986
|
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=158.08 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=112.0
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCCCc-----cccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQMP-----IHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
.+++..+++++....++ ...+.+.. .++.. .+..++.. .|+||+++|.|+|+++|. ++++|||++
T Consensus 7 ~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~----p~~~vv~i~ 82 (202)
T cd02006 7 PIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAAD----PDRQVVALS 82 (202)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhC----CCCeEEEEE
Confidence 36777777777554443 11222211 12222 23344443 589999999999999886 688999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC------------c--------cCcccHHHHHhhcCceE
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------------Q--------FRSDGAVVKGRAYGVRS 144 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~------------~--------~~~~d~~~~a~a~G~~~ 144 (293)
|||+|++. ..+|.+|+++++|+++||.|| +|++....+. . ....|++++|++||+++
T Consensus 83 GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 160 (202)
T cd02006 83 GDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKA 160 (202)
T ss_pred eChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEE
Confidence 99999864 345999999999966655555 5775421110 0 01369999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 145 IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 145 ~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.+|+ +++++.+++++|++.+++.++|+|||+.+.+.
T Consensus 161 ~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 161 IRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred EEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 9998 79999999999986544468999999998654
|
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=177.61 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=134.7
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC-Cccc-ccccccCccHHHHHHHHHhhh-------cCCCceEEEEe
Q 022717 15 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFT-VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYF 85 (293)
Q Consensus 15 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~-~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~ 85 (293)
..|.-.++-+..|+.- +.|+++++|+..... .++. .+++||.|++.|+|+|++.|+ .+.+++|+|++
T Consensus 156 l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~ 231 (891)
T PRK09405 156 LEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFL 231 (891)
T ss_pred HcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEE
Confidence 3674444444556432 246678887765433 3444 478999999999999999993 45688999999
Q ss_pred CcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE----------------
Q 022717 86 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V---------------- 147 (293)
|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.++++++||.++.|
T Consensus 232 GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g 311 (891)
T PRK09405 232 GDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSG 311 (891)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCcc
Confidence 9999999999999999999999 6999999999999988876433 468899999999999999
Q ss_pred ----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 148 ----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 148 ----------d-------------------------------------------G~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
| |||+.+|++|++.|.+. .++|++
T Consensus 312 ~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~Ptv 388 (891)
T PRK09405 312 KLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTV 388 (891)
T ss_pred HHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 4 99999999999988762 478999
Q ss_pred EEEEeecCCCC
Q 022717 175 IEALTYRVGHH 185 (293)
Q Consensus 175 Ie~~t~R~~gH 185 (293)
|.++|.+.+|.
T Consensus 389 Iia~TvkG~G~ 399 (891)
T PRK09405 389 ILAKTIKGYGM 399 (891)
T ss_pred EEEeceecCCC
Confidence 99999998886
|
|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-19 Score=150.54 Aligned_cols=114 Identities=30% Similarity=0.359 Sum_probs=92.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccccc--------
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------- 125 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~-------- 125 (293)
..++||+++|.|+|++++. ++++|+|++|||++++ ..++|++|+.+++|+++||.||++...+...
T Consensus 44 ~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~ 117 (168)
T cd00568 44 GFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGR 117 (168)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCC
Confidence 4689999999999999987 4789999999999986 4588999999999988877777754432221
Q ss_pred ---CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 ---~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
......|+.+++++||+++++|+ +++++.++++++. +.++|++||++|
T Consensus 118 ~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 118 VSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 22345689999999999999998 4778887777776 478999999975
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-19 Score=152.56 Aligned_cols=119 Identities=30% Similarity=0.337 Sum_probs=95.2
Q ss_pred CCcccc-cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC
Q 022717 49 HNYFTV-SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD 126 (293)
Q Consensus 49 ~~~~~~-~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~ 126 (293)
.+++.. .|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|.+|+++++|+++||.||+ |++....+.
T Consensus 41 ~~~~~~~~g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~ 114 (178)
T cd02002 41 GSYFTLRGGGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLK 114 (178)
T ss_pred CCeeccCCccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHH
Confidence 344432 389999999999999986 578999999999998764 569999999999887777775 887542110
Q ss_pred -----------------ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 -----------------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.+++++||+++++|++ ++++.+++++|++ .++|++||+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 115 RVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred HHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11346899999999999999984 8889888888875 58999999964
|
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=149.38 Aligned_cols=115 Identities=24% Similarity=0.305 Sum_probs=92.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~-------- 125 (293)
.|+||+++|.|+|+++|. ++++|+|++|||+++++ +.| |.++.++++|+++||.||+ |++....+
T Consensus 50 ~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~ 123 (178)
T cd02014 50 LATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEF 123 (178)
T ss_pred CchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCce
Confidence 489999999999998885 67899999999999976 565 8999999999777777774 77642111
Q ss_pred -CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 -~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
......|+.+++++||+++.+++ +++++.++++++++ .++|+|||+.+.+
T Consensus 124 ~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 124 GVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999998 68888887777765 5899999999854
|
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=147.95 Aligned_cols=121 Identities=21% Similarity=0.143 Sum_probs=93.6
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccccC--
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD-- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~~-- 126 (293)
.++...++||+++|.|+|+++|. ++++|++++|||++++.. .++|.+|+++++|+++ |++||+|++....+.
T Consensus 45 ~~~~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~ 119 (178)
T cd02008 45 NAIDTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPG 119 (178)
T ss_pred hhccccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCC
Confidence 34445799999999999999997 578999999999997422 4679999999999555 555556765432211
Q ss_pred -------ccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 -------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 -------~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.+++++||+++++| ++.|..++.+++++|++ .++|++|++..
T Consensus 120 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 120 TGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012368999999999999998 77788777788888875 58999999964
|
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=148.07 Aligned_cols=121 Identities=20% Similarity=0.298 Sum_probs=95.7
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~ 125 (293)
.+++.. .++||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|+++++|+++ |++|++|++....+
T Consensus 39 ~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~ 112 (177)
T cd02010 39 NTCLISNGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQ 112 (177)
T ss_pred CCEEeCCCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHH
Confidence 344433 579999999999999986 68899999999999754 3559999999999655 45566687642111
Q ss_pred ---------CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 ---------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ---------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
......|+.++|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred HHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11134699999999999999997 89999999998876 5899999999854
|
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=148.84 Aligned_cols=134 Identities=20% Similarity=0.200 Sum_probs=101.5
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc-CCCEEEEEEeC-CccccccccC-
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~-~lpvi~vi~NN-~~~~~~~~~~- 126 (293)
+++ ..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+++++ ++|+++||.|| +|++......
T Consensus 52 ~~~-~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~ 124 (202)
T PRK06163 52 NFY-MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTL 124 (202)
T ss_pred CeE-eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCC
Confidence 344 4799999999999999986 78899999999999853 3569999887 68866655555 6886432211
Q ss_pred ccCcccHHHHHhhcCce-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHH
Q 022717 127 QFRSDGAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 201 (293)
Q Consensus 127 ~~~~~d~~~~a~a~G~~-~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~ 201 (293)
.....||.++|++||++ +++|+ ++.++..+++++++ .++|+|||+.+.+.. +-+..+|++.|++
T Consensus 125 ~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 125 TSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 12347999999999998 67887 89999999999875 589999999986542 2244557776664
|
|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=151.76 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=95.8
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~ 125 (293)
..++. ..|+||+++|.|+|+++|. ++++|||++|||+|+++ . .+|.+|+++++|+ ++|++||+|++....+
T Consensus 39 ~~~~~~~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q 112 (205)
T cd02003 39 GGYHLEYGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-H-SEIVTAVQEGLKIIIVLFDNHGFGCINNLQ 112 (205)
T ss_pred CcEEcCCCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-H-HHHHHHHHcCCCCEEEEEECCccHHHHHHH
Confidence 44553 3589999999999999885 68899999999999874 3 4599999999995 5566666787632110
Q ss_pred -----C------------------ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 126 -----D------------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 126 -----~------------------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
. .....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred HHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0 0124699999999999999996 89999999998875 58999999999654
|
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=148.00 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=93.3
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~- 124 (293)
.+++.. .++||+++|.|+|+++|. ++++||+++|||+|++. . .+|.+|+++++|+++||.||+ |++....
T Consensus 41 ~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~ 114 (186)
T cd02015 41 RSWLTSGGLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGSLGMVRQWQ 114 (186)
T ss_pred CeEEeCCCccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHH
Confidence 445543 489999999999999886 67899999999999853 3 459999999999766555555 5543211
Q ss_pred -----c-----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 -----S-----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 -----~-----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. ......|+.++|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 115 ELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred HHHcCCceeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11134689999999999999998 57788887777764 6899999999964
|
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-18 Score=145.79 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=94.9
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-C-EEEEEEeCCccccccccC
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-P-VIFICRNNGWAISTPISD 126 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-p-vi~vi~NN~~~~~~~~~~ 126 (293)
.+++ ..|+||+++|.|+|+++|.+ ++|+|++|||+++++ ..+|.+++++++ | +++|++||+|++......
T Consensus 36 ~~~~-~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~ 107 (179)
T cd03372 36 LNFY-MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPT 107 (179)
T ss_pred cccc-cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCC
Confidence 3444 48999999999999999963 789999999999753 346889999995 6 455678888887643322
Q ss_pred cc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 127 QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 127 ~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
.. ...|+.++|++||+++.+|+| +++++.+++++++ ++|++||+.|.+..
T Consensus 108 ~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 108 HAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 22 256899999999999999987 7888888887775 68999999996543
|
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-18 Score=144.04 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=93.7
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc-CCCEEEEE-EeCCccccccccC
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAISTPISD 126 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~-~lpvi~vi-~NN~~~~~~~~~~ 126 (293)
.+++. .|+||+++|.|+|+++|. + ++|||++|||+|++. . .+|.+++++ ++|+++|| +|++|++......
T Consensus 36 ~~~~~-~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~-~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~ 107 (157)
T cd02001 36 GHFYM-LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-P-GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPT 107 (157)
T ss_pred CCEEe-ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-c-cHHHHHHHhcCCCEEEEEEeCccccccCCcCC
Confidence 44544 899999999999999986 2 789999999999753 2 458999999 49966655 6666876542222
Q ss_pred ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 ~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.....|+.++|++||+++++|+ +++++.++++++++ .++|++||+.+.
T Consensus 108 ~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 108 PSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred CCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 2235799999999999999996 79999999999886 589999999884
|
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=144.35 Aligned_cols=117 Identities=18% Similarity=0.112 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEE-EEEeCCccccccccCccCccc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF-ICRNNGWAISTPISDQFRSDG 132 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~-vi~NN~~~~~~~~~~~~~~~d 132 (293)
+|+||+++|.|+|+++|. +++.|+|++|||+|++ ..++|.+++++++ |+++ |++|++|++...........|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 599999999999999986 6789999999999974 3456999999997 6555 555555776432222223479
Q ss_pred HHHHHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 133 AVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 133 ~~~~a~a~G~~~-~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+.++|++||+.+ .+|+ ++.++.++++++++ .++|++||+.+.+..
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 999999999997 5787 89999999988875 578999999997654
|
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-18 Score=170.12 Aligned_cols=142 Identities=23% Similarity=0.293 Sum_probs=119.1
Q ss_pred CCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHH---HHHHHHHhhcCC-CEEEEEE
Q 022717 39 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICR 114 (293)
Q Consensus 39 ~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~---~Eal~~A~~~~l-pvi~vi~ 114 (293)
|+++|+.....++...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++.-.++ .|+.|+.
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 200 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEE
Confidence 678899865556666789999999999999965 47889999999999999984 787778888888 4899999
Q ss_pred eCCccccccccCc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEE
Q 022717 115 NNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEA 177 (293)
Q Consensus 115 NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~-----------~~r~~---~gP~--lIe~ 177 (293)
+|+|+|++++... ....++.+++++|||+.+.|||+|+.+++.++++|++ .+|.+ .+|+ +|.+
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~ 280 (785)
T PRK05261 201 LNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVL 280 (785)
T ss_pred ecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 9999999998855 3457899999999999999999999999988766555 33434 5899 9999
Q ss_pred EeecCCC
Q 022717 178 LTYRVGH 184 (293)
Q Consensus 178 ~t~R~~g 184 (293)
+|...+|
T Consensus 281 rT~kG~g 287 (785)
T PRK05261 281 RTPKGWT 287 (785)
T ss_pred ECCccCC
Confidence 9988655
|
|
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=144.54 Aligned_cols=116 Identities=23% Similarity=0.284 Sum_probs=93.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccC------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD------Q 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~------~ 127 (293)
.++||+++|.|+|+++|. +++.|++++|||+|++ .++| |.+|+++++| +++|++||+|++...... .
T Consensus 49 ~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (183)
T cd02005 49 WGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYND 122 (183)
T ss_pred hhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCccc
Confidence 589999999999999986 5789999999999976 4566 8899999998 666777778887432111 1
Q ss_pred cCcccHHHHHhhcC----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 128 FRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 128 ~~~~d~~~~a~a~G----~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
....|+.++|++|| +++.+|+ +++++.++++++++ ..++|+|||+.+.+
T Consensus 123 ~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 123 IANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred CCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 22468999999999 7888886 89999998888885 14789999999865
|
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-18 Score=142.22 Aligned_cols=119 Identities=27% Similarity=0.400 Sum_probs=93.8
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc-
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI- 124 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~- 124 (293)
.+++. ..++||+++|.|+|+++|. ++++||+++|||+|.+. . .+|.+|.++++|+++||.|| +|++....
T Consensus 19 ~~~~~~~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~-~-~el~ta~~~~~~v~~vv~nN~~~~~~~~~~ 92 (153)
T PF02775_consen 19 RRFLTSGGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS-L-QELATAVRYGLPVVIVVLNNGGYGMTGGQQ 92 (153)
T ss_dssp TEEEESTTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-G-GGHHHHHHTTSSEEEEEEESSBSHHHHHHH
T ss_pred CeEEcCCCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec-c-chhHHHhhccceEEEEEEeCCcceEecccc
Confidence 44544 3689999999999999984 78999999999999864 3 45999999999966655555 56554211
Q ss_pred ---c------Cc---cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 125 ---S------DQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 125 ---~------~~---~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
. .. ....|+.++|+++|+++.+|+..|++++.+++++|++ .++|+||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 93 TPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred ccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 1 11 3457899999999999999997777999999999985 799999997
|
It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A .... |
| >TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=142.14 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=91.8
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeC-CccccccccC
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNN-GWAISTPISD 126 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN-~~~~~~~~~~ 126 (293)
.+++ ..|+||+++|.|+|+++|. +++|||++|||+|+++. ++|.+|+++++ |+++||.|| +|++......
T Consensus 36 ~~~~-~~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~ 107 (181)
T TIGR03846 36 LNFY-MLGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPT 107 (181)
T ss_pred CCee-eccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCC
Confidence 3444 3899999999999999985 67899999999998653 56999999995 977666555 4777542211
Q ss_pred cc-CcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 127 QF-RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 127 ~~-~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. ...|+.++|++||+++.+ |+ +++++.++++ +++ .++|++||+.+.+
T Consensus 108 ~~~~~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 108 PASRRTDLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CCCCCCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 11 256899999999999998 76 7889988885 553 5899999999864
|
Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=163.64 Aligned_cols=118 Identities=26% Similarity=0.304 Sum_probs=97.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccc---------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 124 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~---------~ 124 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|++. .+| |.+|+++++|+++||.|| +|++... .
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 489999999999999986 78899999999999853 454 999999999977766666 7875321 1
Q ss_pred cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 022717 125 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 184 (293)
Q Consensus 125 ~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 184 (293)
.......|+.++|++||+++++|+ +++++.++++++++ .++|+|||++++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112235799999999999999997 89999999988875 6899999999999875
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=163.77 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=115.7
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 90 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~ 90 (293)
+++..++.++....++ .....+. ..++.. .+..++.. .++||+++|.|+|+++|. ++++|||++|||+|
T Consensus 385 i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f 460 (569)
T PRK08327 385 ITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLAT----PDRLVIATVGDGSF 460 (569)
T ss_pred cCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcC----CCCeEEEEecCcce
Confidence 6777787777554432 1122222 222222 23445544 489999999999998874 78999999999999
Q ss_pred cchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc-----------------cCcc-CcccHHHHHhhcCceEEEEeCCC
Q 022717 91 SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----------------SDQF-RSDGAVVKGRAYGVRSIRVDGND 151 (293)
Q Consensus 91 ~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~-----------------~~~~-~~~d~~~~a~a~G~~~~~VdG~D 151 (293)
+++...++|++|+++++|+++||.|| +|++.... .... ...|+.++|++||+++.+|+ +
T Consensus 461 ~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~ 538 (569)
T PRK08327 461 IFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--D 538 (569)
T ss_pred eecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--C
Confidence 88765557999999999977766666 67764210 1111 34689999999999999998 8
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 152 ALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 152 ~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++++..++++|++.++++++|+|||+.+.
T Consensus 539 ~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 539 PEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 99999999999987777788999999873
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=163.82 Aligned_cols=152 Identities=23% Similarity=0.280 Sum_probs=111.0
Q ss_pred CHHHHHHHhhcCCCC---CCCCCCC-cc----ccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 19 SMQEFANQCFGNKAD---YGKGRQM-PI----HYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 19 ~~~~~~~~~~g~~~~---~~~G~~~-~~----h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
.|..++..+.....+ .+.+.|. .+ |+.. .+.+++.+ .|+||+++|.|+|++++. +++.|||++||
T Consensus 360 ~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GD 435 (550)
T COG0028 360 KPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGD 435 (550)
T ss_pred CHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhC----CCCcEEEEEcc
Confidence 466777766554443 2233332 11 2222 23344443 689999999999998887 78999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccCcc---------Cccc-HHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF---------RSDG-AVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~~~---------~~~d-~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+|++. .++|.||+++++|+++||.||+ |++....+... -... |.++|++||+++++|+ +++++.
T Consensus 436 G~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~ 511 (550)
T COG0028 436 GGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELE 511 (550)
T ss_pred cHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHH
Confidence 999853 4569999999999777777766 66643221111 1122 9999999999999999 899999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.++++|++ .++|++||+.+.+.
T Consensus 512 ~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 512 EALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHHHh----CCCCEEEEEEecCc
Confidence 99999997 68999999999765
|
|
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=141.30 Aligned_cols=118 Identities=25% Similarity=0.245 Sum_probs=91.3
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE-EEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~~ 125 (293)
..++.. .+.||+++|.|+|+++|. +++|||++|||+|++. ..+|.+|+++++|+++| ++|++|++....+
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~ 114 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLP 114 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheecc
Confidence 345533 378999999999999984 6789999999999854 35599999999996555 5555577532111
Q ss_pred C---------cc---CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 D---------QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 ~---------~~---~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. .. ...|+.++|++||+++.+|+ +++++..+++++++ .++|++||+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 115 QASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred CCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1 11 24689999999999999997 89999999998875 58999999976
|
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-17 Score=163.97 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=97.1
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE-EeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~ 125 (293)
..++.. .|+||+++|.|+|+++|. ++++||+++|||+|++. . .+|.||+++++|+++|| +|++|++....+
T Consensus 409 ~~~~~~~~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q 482 (588)
T TIGR01504 409 RHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-I-EELAVGAQHNIPYIHVLVNNAYLGLIRQAQ 482 (588)
T ss_pred CcEEeCCccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHH
Confidence 445433 589999999999999886 78899999999999864 3 45999999999966555 555587532110
Q ss_pred C----------cc----------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 D----------QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ~----------~~----------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. .. ...||.++|++||+.+.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 483 RAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 00 13699999999999999997 8999999999998644346899999999954
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=157.35 Aligned_cols=150 Identities=25% Similarity=0.207 Sum_probs=106.3
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccC-CCCCCcccc-cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYG-SNKHNYFTV-SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~-~~~~~~~~~-~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++.++....++. ..+.+. ..++. ..+..++.. .|+||+++|.|+|+++|. ++++|||++||
T Consensus 337 i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GD 412 (514)
T PRK07586 337 LTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVAC----PDRKVLALQGD 412 (514)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHhC----CCCeEEEEEec
Confidence 56777877776544321 122221 11221 223444433 589999999999999986 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-----c----------Ccc--CcccHHHHHhhcCceEEEEeC
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI-----S----------DQF--RSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~-----~----------~~~--~~~d~~~~a~a~G~~~~~VdG 149 (293)
|+|++. ..+|.+|++++||+++ |++|++|++.... . ... ...||.++|++||+++.+|+
T Consensus 413 Gsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~- 489 (514)
T PRK07586 413 GSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT- 489 (514)
T ss_pred hHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC-
Confidence 999853 4569999999999555 5566668764210 0 001 23689999999999999997
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 150 NDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 150 ~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++.++..++++|++ .++|+|||+.+
T Consensus 490 -~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 490 -TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred -CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 78899998888875 58999999974
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=158.14 Aligned_cols=150 Identities=25% Similarity=0.230 Sum_probs=105.8
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccC-CCCCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYG-SNKHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~-~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++.++....++ .+.+.+. ..++. ..+..++. .+|+||+++|.|+|+++|. ++++|||++||
T Consensus 341 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GD 416 (518)
T PRK12474 341 LNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGD 416 (518)
T ss_pred cCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHHC----CCCcEEEEEcC
Confidence 5677777776543332 1122221 11222 22334453 3589999999999999996 78899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---------c------C--ccCcccHHHHHhhcCceEEEEeC
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---------S------D--QFRSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---------~------~--~~~~~d~~~~a~a~G~~~~~VdG 149 (293)
|+|++. ..+|.||++++||+++||.|| +|++.... . . ..+..||.++|++||+++.+|+
T Consensus 417 G~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~- 493 (518)
T PRK12474 417 GGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT- 493 (518)
T ss_pred chhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC-
Confidence 999864 355999999999955555555 58764211 0 0 0113589999999999999998
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 150 NDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 150 ~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
+++++..++++|++ .++|+|||+.+
T Consensus 494 -~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 494 -TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred -CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 78999999998875 58999999974
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=156.50 Aligned_cols=150 Identities=25% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCHHHHHHHhhcCCCCC---CC--CCC---CccccCC-CCCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY---GK--GRQ---MPIHYGS-NKHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~--G~~---~~~h~~~-~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++..+....++. .. |.. +..++.. ....++. .+|+||+++|.|+|+++|. ++++|+|++||
T Consensus 359 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GD 434 (530)
T PRK07092 359 LSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALAQ----PGRRVIGLIGD 434 (530)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHhC----CCCeEEEEEeC
Confidence 56777787776654431 11 221 1113322 2234443 3689999999999999986 67899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc----------cCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~----------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+|+++ .++|++|+++++|+++||.||+ |++.... .......|+.+++++||+++++|+ ++.++.
T Consensus 435 G~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~ 510 (530)
T PRK07092 435 GSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELA 510 (530)
T ss_pred chHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHH
Confidence 999976 3679999999999777777776 8764221 111235789999999999999998 678888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEe
Q 022717 157 SAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++++++++ .++|+|||+.+
T Consensus 511 ~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 511 DALARALA----ADGPVLVEVEV 529 (530)
T ss_pred HHHHHHHh----CCCCEEEEEEc
Confidence 77777764 68999999986
|
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=157.67 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=110.6
Q ss_pred CCHHHHHHHhhcCCC--C--CCCCCCCc-----cccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKA--D--YGKGRQMP-----IHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~--~--~~~G~~~~-----~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+.+..++.++..... + .+.+.|.. .++. ..+.+++.. .|+||+++|.|+|+++|. ++++|||++
T Consensus 381 l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~----p~r~Vv~i~ 456 (565)
T PRK06154 381 INPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLAR----PDALVINLW 456 (565)
T ss_pred cCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhC----CCCcEEEEE
Confidence 677778877765442 2 11122221 1222 223455543 589999999999999986 689999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC--------ccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD--------QFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~--------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|||+|++. ..+|.+|++++||+++||.|| +|++...... .....||.++|++||+++.+|+ +++++.
T Consensus 457 GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~ 532 (565)
T PRK06154 457 GDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLV 532 (565)
T ss_pred cchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHH
Confidence 99999854 345999999999966655555 5775421110 1113699999999999999998 899999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.++++|++..+ .++|+|||+.+.+
T Consensus 533 ~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 533 PALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred HHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 99999986433 4789999999854
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-16 Score=157.24 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=95.4
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI- 124 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~- 124 (293)
..++. ..|+||+++|.|+|+++|. ++++|||++|||+|++. .+ +|.+|+++++|+++ |++|++|++....
T Consensus 399 ~~~~~~~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~ 472 (574)
T PRK09124 399 RRLLGSFNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MG-DFLSLVQLKLPVKIVVFNNSVLGFVAMEM 472 (574)
T ss_pred CeEEecCCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HH-HHHHHHHhCCCeEEEEEeCCccccHHHHH
Confidence 44553 3589999999999999886 68899999999999863 34 59999999999555 5555557764110
Q ss_pred --------cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.......||.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 473 KAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred HhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011234689999999999999998 89999999998875 5889999999865
|
|
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=140.69 Aligned_cols=120 Identities=22% Similarity=0.250 Sum_probs=91.7
Q ss_pred cccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC--
Q 022717 51 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-- 126 (293)
Q Consensus 51 ~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~-- 126 (293)
.+...++||+++|.|+|++++. ++++|||++|||++ +++ .++|.+|+++++|+++||.||+ |++..-+..
T Consensus 57 ~~~~~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~ 130 (235)
T cd03376 57 AFENAAAVASGIEAALKALGRG----KDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGS 130 (235)
T ss_pred hhcCHHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCC
Confidence 3445579999999999986653 78899999999995 554 3559999999999877777775 664211000
Q ss_pred -------------------ccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 -------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 -------------------~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.....|+.++|+++|++++. +.-.+++++.+++++|++ .++|+|||+.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~ 200 (235)
T cd03376 131 TPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSP 200 (235)
T ss_pred CCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 11336999999999999874 455699999999999986 589999999874
|
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=160.11 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=95.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----c--
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----Q-- 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~----~-- 127 (293)
.|+||+++|.|+|+++|. +++.|||++|||+|++. . .+|.+|+++++|+++||.||+ |++....+. .
T Consensus 418 ~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~-~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~ 491 (591)
T PRK11269 418 AGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-I-EELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYC 491 (591)
T ss_pred cccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-H-HHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCcc
Confidence 589999999999999885 68899999999999863 3 459999999999776666665 765321100 0
Q ss_pred ----c----------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 128 ----F----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 128 ----~----------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+ ...||+++|++||+++.+|+ +++++..++++|++.+.+.++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 492 VQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 13689999999999999997 8999999999998654446899999999864
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=158.89 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=109.9
Q ss_pred CCCHHHHHHHhhcCCCCC--CCCCCC-----ccccCCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 17 GFSMQEFANQCFGNKADY--GKGRQM-----PIHYGSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~~--~~G~~~-----~~h~~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
++.+..++.++....++. ..+.|. ..|+...+..++.. .|+||+++|.|+|+++|. +++.||+++||
T Consensus 386 ~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GD 461 (616)
T PRK07418 386 EIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGD 461 (616)
T ss_pred CcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhC----CCCcEEEEEcc
Confidence 367777888776544431 112221 11232233445543 589999999999999986 78899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc----------Ccc--CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQF--RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~----------~~~--~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
|+|++. ..+|.+|++++||+++||.||+ |++....+ ... ...||.++|++||+++++|+ ++++
T Consensus 462 G~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~e 537 (616)
T PRK07418 462 ASFLMN--IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQ 537 (616)
T ss_pred hHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999853 3459999999999776666655 66532110 011 24689999999999999998 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++ .++|+|||+.+.+
T Consensus 538 l~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 538 LKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred HHHHHHHHHh----CCCCEEEEEEecC
Confidence 9999988875 5789999999864
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=156.57 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=93.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-----cC--
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI-----SD-- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~-----~~-- 126 (293)
.++||+++|.|+|+++|. ++++||+++|||+|++. . .+|.+|++++||+++ |++|++|++.... ..
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-S-MELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-H-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 579999999999999986 68899999999999863 3 459999999999555 5555567764211 10
Q ss_pred --ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 127 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 127 --~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.+...||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 1235799999999999999998 79999999998875 58899999999653
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=135.74 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=88.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC-c----
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-Q---- 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~-~---- 127 (293)
.++||+++|.|+|+++|. ++++||++.|||++ +++ ..+|.+|.++++|+++||.|| .|++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 478999999999999886 78999999999994 543 345999999999966555555 5776432110 0
Q ss_pred -----------cCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 128 -----------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 128 -----------~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
....|+.++|+++|++++ ++.-.++.++.+++++|++ .++|++||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 013589999999999985 2233489999999999986 58999999976
|
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=156.50 Aligned_cols=118 Identities=27% Similarity=0.336 Sum_probs=95.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~-------- 125 (293)
.|+||+++|.|+|++++. ++++|+|++|||+|+++ .++|.+|++++||+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 489999999999998875 78899999999999876 356999999999977666555 687642111
Q ss_pred --CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 022717 126 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 184 (293)
Q Consensus 126 --~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 184 (293)
......|+.++|++||+++.+|+ +++++..+++++++ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01124689999999999999998 68888888888875 5889999999987643
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=156.36 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=110.3
Q ss_pred CCHHHHHHHhhcCCCC---CCC--CCC-C--cccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGK--GRQ-M--PIHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~--G~~-~--~~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....+. ... |.. . ..++ ...+..++.. .|+||+++|.|+|+++|. ++++|||++|
T Consensus 381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~Vv~i~G 456 (579)
T TIGR03457 381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVVAYAG 456 (579)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhC----CCCcEEEEEc
Confidence 6677788777654432 112 221 1 1122 2233455543 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc-----C-----ccCc-ccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS-----D-----QFRS-DGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~-----~-----~~~~-~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|++++||+++ |++|++|++....+ . .... .||.++|++||+++.+|+ ++++
T Consensus 457 DG~f~m~-~-~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~e 532 (579)
T TIGR03457 457 DGAWGMS-M-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPED 532 (579)
T ss_pred chHHhcc-H-HHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999864 3 459999999999655 55555687542110 0 1122 499999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+..++++|++.. +.++|+|||+.+.+.
T Consensus 533 l~~al~~a~~~~-~~~~p~lieV~v~~~ 559 (579)
T TIGR03457 533 VGPALKKAIAAQ-AEGKTTVIEIVCTRE 559 (579)
T ss_pred HHHHHHHHHhhC-CCCCcEEEEEEeCCC
Confidence 999999998643 247899999999653
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=154.91 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE-EEeCCcccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~~-------- 125 (293)
.|+||+++|.|+|+++|. +++.|++++|||+|++. ..+|.+|+++++|+++| ++|++|++....+
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 579999999999999985 68899999999999863 34599999999996555 5555687642111
Q ss_pred --CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 126 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 126 --~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
......||.++|++||+++.+|+ +++++..+++++++ .++|+|||+.++
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 11234689999999999999997 78899999998875 578999999986
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=156.26 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhcCCC--C--CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKA--D--YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~--~--~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+.+..++.++..... + ...+.|. ..|+.. ++..++.. .|+||+++|.|+|+++|. +++.||+++
T Consensus 380 l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~ 455 (595)
T PRK09107 380 IMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAH----PDALVIDIA 455 (595)
T ss_pred cCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhC----CCCeEEEEE
Confidence 566777777765442 2 1122221 112222 33455543 489999999999999986 788999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc---------cCc--cCcccHHHHHhhcCceEEEEeCCCHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI---------SDQ--FRSDGAVVKGRAYGVRSIRVDGNDAL 153 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~---------~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~ 153 (293)
|||+|++. . .+|.+|++++||+++||.||+ |++.... ... ....||.++|++||+++.+|+ +++
T Consensus 456 GDG~f~m~-~-~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~ 531 (595)
T PRK09107 456 GDASIQMC-I-QEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPG 531 (595)
T ss_pred cCchhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHH
Confidence 99999863 3 459999999999766666555 7653211 111 124699999999999999997 899
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 154 AIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 154 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++.+++++|++ .++|+|||+.+.+
T Consensus 532 el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 532 DLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHHHHHh----CCCCEEEEEEecC
Confidence 99999998885 5889999999965
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=156.25 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=109.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..++.. .+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 373 l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~G 448 (570)
T PRK06725 373 LKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAK----EEELVICIAG 448 (570)
T ss_pred cCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhc----CCCeEEEEEe
Confidence 6677788777654432 1122221 112222 23445533 489999999999999885 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc----------CccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. .+| |.+|++++||+++||.||+ |++....+ ......|+.++|++||+++.+|+ +++++
T Consensus 449 DG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l 524 (570)
T PRK06725 449 DASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEA 524 (570)
T ss_pred cchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHH
Confidence 9999753 444 9999999999777777776 65532110 11234789999999999999996 89999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
..+++++++ .++|+|||+.+.+
T Consensus 525 ~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 525 KQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHHHHh----CCCCEEEEEEeCC
Confidence 888888875 5899999999964
|
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-16 Score=154.88 Aligned_cols=122 Identities=24% Similarity=0.310 Sum_probs=96.4
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccc---
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--- 122 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~--- 122 (293)
.+++. ..|+||+++|.|+|+++|. ++++|||++|||+|+++ .. +|.+|+++++|+++||.||+ |++..
T Consensus 399 ~~~~~s~~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~-el~Ta~~~~lpv~~vV~NN~~~g~i~~~q 472 (578)
T PRK06546 399 RRVIGSFRHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LG-ELLTVKLYDLPVKVVVFNNSTLGMVKLEM 472 (578)
T ss_pred ceEEccCCcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HH-HHHHHHHhCCCeEEEEEECCccccHHHHH
Confidence 34443 3589999999999999986 68899999999999863 34 49999999999776666665 66531
Q ss_pred -----ccc-CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 123 -----PIS-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 123 -----~~~-~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+.. ......||.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 473 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 532 (578)
T PRK06546 473 LVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDPN 532 (578)
T ss_pred HhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 000 11235799999999999999998 89999999998876 68999999998643
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=155.53 Aligned_cols=152 Identities=16% Similarity=0.052 Sum_probs=108.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..|+.. .+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 358 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~----p~r~vv~i~G 433 (542)
T PRK05858 358 IHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLAR----PSRQVVLLQG 433 (542)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhC----CCCcEEEEEc
Confidence 5667777777654433 1122221 113322 22344433 589999999999999886 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCcccccccc----------CccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. .+ +|.+|+++++|+++|| +|+.|++..... ......||.++|++||+.+.+|+ +++++
T Consensus 434 DG~f~~~-~~-eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL 509 (542)
T PRK05858 434 DGAFGFS-LM-DVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAEL 509 (542)
T ss_pred CchhcCc-HH-HHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHH
Confidence 9999864 44 5999999999965555 555577532110 11135799999999999999998 89999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.+++++|++ .++|+|||+.|.+
T Consensus 510 ~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 510 GPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred HHHHHHHHh----CCCcEEEEEEECC
Confidence 999999886 5899999999954
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=154.10 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=109.0
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCCC----c-cccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCC-CceEEEE
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQM----P-IHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRK-DACAVTY 84 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~~----~-~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~ 84 (293)
.+++..++.++....++ ...+.+. . .++.. .+.+++.. .|+||+++|.|+|+++|. + +++|||+
T Consensus 346 ~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~~Vv~i 421 (549)
T PRK06457 346 PMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAV----ENKRQVISF 421 (549)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcC----CCCCeEEEE
Confidence 46777788777654433 1112221 1 12221 23344443 589999999999999886 5 7899999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------cCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
+|||+|++. ..+|.+|++++||+++ |++|++|++.... .......||.++|++||+++.+|+ ++++
T Consensus 422 ~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 497 (549)
T PRK06457 422 VGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKE 497 (549)
T ss_pred EcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999999853 3559999999999555 5555567753211 111224689999999999999998 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..+++++++ .++|+|||+.+.+
T Consensus 498 l~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 498 AEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHHHHHh----CCCCEEEEEEeCc
Confidence 9999999875 5889999999964
|
|
| >PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-16 Score=139.83 Aligned_cols=122 Identities=23% Similarity=0.308 Sum_probs=91.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc------
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ------ 127 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~------ 127 (293)
..|+-+.++++|+|+|.|..+.+.+..||+++||||+.-|+.+||||.|+..+-++|+|++||+.+|+.+....
T Consensus 109 ~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~ 188 (270)
T PF13292_consen 109 GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSK 188 (270)
T ss_dssp --SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---
T ss_pred cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999999999999999887543210
Q ss_pred -c--------C-------------------cc-cH----HHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcE
Q 022717 128 -F--------R-------------------SD-GA----VVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPI 173 (293)
Q Consensus 128 -~--------~-------------------~~-d~----~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~ 173 (293)
. . .. .+ ..+++.+|+.++- |||||..++.++++.+.+ -++|+
T Consensus 189 l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPv 264 (270)
T PF13292_consen 189 LRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPV 264 (270)
T ss_dssp ----------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCE
Confidence 0 0 00 00 1246777998886 899999999988887764 69999
Q ss_pred EEEEEe
Q 022717 174 LIEALT 179 (293)
Q Consensus 174 lIe~~t 179 (293)
+|+++|
T Consensus 265 llHV~T 270 (270)
T PF13292_consen 265 LLHVIT 270 (270)
T ss_dssp EEEEE-
T ss_pred EEEEeC
Confidence 999987
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-16 Score=156.17 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=108.5
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.|||++|
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~G 447 (572)
T PRK08979 372 IKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAM----PDETVVCVTG 447 (572)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhC----CCCeEEEEEc
Confidence 5667777777654432 1122221 112222 23455543 479999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---------cCc-c-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---------SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---------~~~-~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|++++||+++||.|| +|++.... ... . ...||.++|++||+++.+|+ ++.+
T Consensus 448 DG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 523 (572)
T PRK08979 448 DGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDE 523 (572)
T ss_pred chHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999864 345999999999966555555 57653211 011 1 24689999999999999998 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++. .++|+|||+.+.+
T Consensus 524 L~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 524 LESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 99999988751 3789999999965
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=154.42 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=107.0
Q ss_pred CCHHHHHHHhhcCCCC---CC--CCCCC--ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YG--KGRQM--PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~--~G~~~--~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++..+....++ .. .|... ..++.. .+.+++.. .|+||+++|.|+|+++|. ++++|||++||
T Consensus 356 l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~GD 431 (539)
T TIGR03393 356 LSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTAC----PNRRVILLIGD 431 (539)
T ss_pred cCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhcC----CCCCeEEEEcC
Confidence 6677777777654432 11 12211 112211 22344432 489999999999999885 78899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc------CccCcccHHHHHhhcCce----EEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS------DQFRSDGAVVKGRAYGVR----SIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~------~~~~~~d~~~~a~a~G~~----~~~VdG~D~~~v~ 156 (293)
|+|++. ..+|.+|+++++|+ ++|++|++|++..... ......||.++|++||++ +.+|+ ++.++.
T Consensus 432 G~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~ 507 (539)
T TIGR03393 432 GSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLA 507 (539)
T ss_pred cHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHH
Confidence 999853 45699999999995 5566666687643111 112346999999999996 88897 788999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEee
Q 022717 157 SAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++++++++ .++|+|||+.+.
T Consensus 508 ~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 508 DVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred HHHHHHhc----cCCeEEEEEEcC
Confidence 98888875 589999999984
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=153.48 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCC---C--ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQ---M--PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~---~--~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++.....+. ..+.+ . ..++.. ....++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 359 i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv~i~G 434 (575)
T TIGR02720 359 LQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNY----PDRQVFNLAG 434 (575)
T ss_pred cCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhC----CCCcEEEEEc
Confidence 66777777776544321 11222 1 112221 22344443 589999999999998886 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc----c-----CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI----S-----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~----~-----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|++. ..+|.+++++++|+++ |++||+|++.... . ......||.++|++||+++.+|+ +.+++.
T Consensus 435 DGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~ 510 (575)
T TIGR02720 435 DGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLP 510 (575)
T ss_pred ccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHH
Confidence 9999863 3459999999999665 5666668863211 0 11235789999999999999997 788999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++++++++ + +.++|+|||+++..
T Consensus 511 ~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 511 AVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred HHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 99999885 2 35889999999854
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-16 Score=154.07 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=110.0
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~G 447 (574)
T PRK07979 372 IKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMAL----PEETVVCVTG 447 (574)
T ss_pred cCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhC----CCCeEEEEEc
Confidence 6677777777654332 1122221 112222 23445543 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---------cCc--cCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---------SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---------~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|++++||+++||.|| +|++.... ... ....||.++|++||+++.+|+ ++++
T Consensus 448 DG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~e 523 (574)
T PRK07979 448 DGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDE 523 (574)
T ss_pred chhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHH
Confidence 9999853 356999999999966655555 57653211 111 124699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++.++ .++|+|||+.+.+
T Consensus 524 L~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 524 LESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 9999999987433 3789999999965
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-16 Score=154.41 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=108.0
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..++. ..+..++.. .|+||+++|.|+|+++|. ++++|||++|
T Consensus 374 l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv~i~G 449 (574)
T PRK06466 374 IKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVACVTG 449 (574)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhC----CCCeEEEEEc
Confidence 5667788877654332 1112221 11222 223444432 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEE-EEeCCccccccc---------cCc--cCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPI---------SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~---------~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|.++++|+++| ++|++|++.... ... ....||.++|++||+++.+|+ ++++
T Consensus 450 DG~f~m~-~-~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 525 (574)
T PRK06466 450 EGSIQMN-I-QELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKD 525 (574)
T ss_pred chhhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999863 3 4599999999996655 555557753211 001 124699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++. .++|+|||+.+.+
T Consensus 526 l~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 526 LKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 99999988852 2789999999965
|
|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-16 Score=153.73 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=108.4
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCCC-CCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGSN-KHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~~-~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++.++....++ .+.+.+. ..++... ...++. ..|+||+++|.|+|++++. ++++|||++||
T Consensus 367 ~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~GD 442 (557)
T PRK08199 367 VQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAIAAKLLF----PERTVVAFAGD 442 (557)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHHHHHHhC----CCCcEEEEEcc
Confidence 6677777777654443 1222221 1122222 222332 3689999999999998875 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc----------CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+|++. .++|.+|+++++|+++||.||+ |++....+ ......|+.++|++||+++.+|+ +++++.
T Consensus 443 Gsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~ 518 (557)
T PRK08199 443 GCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFA 518 (557)
T ss_pred hHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHH
Confidence 999853 3569999999999887777776 77532110 11134689999999999999998 788888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
++++++++ .++|+|||+.+.+.
T Consensus 519 ~al~~a~~----~~gp~li~v~~~~~ 540 (557)
T PRK08199 519 PAFERALA----SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHHHHh----CCCCEEEEEEeCHH
Confidence 88888774 68999999999653
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-16 Score=157.37 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=110.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----cccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++.++...... ...+.+. ..++ ...+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 386 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~----p~r~vv~i~G 461 (588)
T PRK07525 386 MHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIAC----PDRPVVGFAG 461 (588)
T ss_pred cCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhC----CCCcEEEEEc
Confidence 6666777766554432 1112221 1122 2233455543 589999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccc-----cC-----cc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI-----SD-----QF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~-----~~-----~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|+++ ..| |.+|+++++|+++|| +|++|++.... .. .. ...||.++|++||+++++|+ ++++
T Consensus 462 DG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 537 (588)
T PRK07525 462 DGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEE 537 (588)
T ss_pred CchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999875 444 899999999966655 55578753211 00 11 23699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+..+++++++.. +.++|+|||+.+.+..
T Consensus 538 l~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 538 LGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred HHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 999999998743 2368999999997544
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-16 Score=156.05 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=108.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++..+....++ .+.+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 388 i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~G 463 (587)
T PRK06965 388 IKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAH----PDDDVVCITG 463 (587)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEEc
Confidence 5666777777654432 1222221 112222 23445533 479999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc---------cCc-c-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI---------SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~---------~~~-~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|+++++|+++||.||+ |++.... ... . ..+||.++|++||+++.+|+ ++.+
T Consensus 464 DGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~e 539 (587)
T PRK06965 464 EGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSD 539 (587)
T ss_pred chhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHH
Confidence 9999864 3559999999999666555554 6543211 011 1 24699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++. .++|+|||+.+.+
T Consensus 540 L~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 540 VEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred HHHHHHHHHhc---CCCcEEEEEEecc
Confidence 99999998862 3689999999964
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-16 Score=152.68 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=95.4
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~- 124 (293)
..++.. .|+||+++|.|+|+++|. ++++|++++|||+|++. ..+|.+|+++++|++ +|++|++|++....
T Consensus 397 ~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~ 470 (547)
T PRK08322 397 NTCLLDNALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQ 470 (547)
T ss_pred CCEEcCCCcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHH
Confidence 444543 479999999999999886 78899999999999854 345999999999955 55566668764211
Q ss_pred ----c----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 ----S----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ----~----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. .....+||.++|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 471 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 471 ENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred HhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 11234699999999999999997 79999999998875 5899999999854
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=153.07 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=108.2
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccCC-CC-CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYGS-NK-HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~~-~~-~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+.+..++.++....+.. ..+.+. ..++.. ++ .+++.. .++||+++|.|+|+++|. ++++|||++
T Consensus 387 i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~----~~~~vv~i~ 462 (578)
T PRK06112 387 IRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVAR----PGAPVICLV 462 (578)
T ss_pred cCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhC----CCCcEEEEE
Confidence 56677777776654431 112221 112222 22 245543 479999999999998875 688999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----------ccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----------QFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~----------~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
|||+|++ ..++|++|+++++|+++||.||+ |++....+. .....||.++|++||+++++|+ ++++
T Consensus 463 GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 538 (578)
T PRK06112 463 GDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAE 538 (578)
T ss_pred cchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 9999974 56779999999999877777775 443221110 1124689999999999999998 6888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++++++ .++|+|||+++.+
T Consensus 539 l~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 539 LAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred HHHHHHHHHh----CCCCEEEEEEcCc
Confidence 8888888875 5899999999854
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=153.75 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=109.7
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCCC-----ccccCCC-CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQM-----PIHYGSN-KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~~-~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
++.+..++.++....+. .+.+.|. ..++..+ ...++.. .|+||+++|.|+|+++|. ++++|||++
T Consensus 365 ~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~----p~~~Vv~i~ 440 (597)
T PRK08273 365 PVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAH----PDRPVIALV 440 (597)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhC----CCCcEEEEE
Confidence 47788888877654432 1122221 1122222 2334433 489999999999999986 688999999
Q ss_pred CcccccchHHHHHHHHHhhc-----CCCEEEEEEeC-Cccccccc------------cCccCcccHHHHHhhcCceEEEE
Q 022717 86 GDGGTSEGDFHAALNFSAVT-----EAPVIFICRNN-GWAISTPI------------SDQFRSDGAVVKGRAYGVRSIRV 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~-----~lpvi~vi~NN-~~~~~~~~------------~~~~~~~d~~~~a~a~G~~~~~V 147 (293)
|||+|++... .+|.+|+++ +||+++||.|| +|++.... .......||.++|++||+++.+|
T Consensus 441 GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 519 (597)
T PRK08273 441 GDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV 519 (597)
T ss_pred cchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE
Confidence 9999975323 459999999 89977666666 57643211 00113468999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 148 DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 148 dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+ +++++..++++|++ .++|+|||+.+.+.
T Consensus 520 ~--~~~eL~~al~~a~~----~~~p~lIeV~~~~~ 548 (597)
T PRK08273 520 D--DPEQLGAAWDEALA----ADRPVVLEVKTDPN 548 (597)
T ss_pred C--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 8 78999999999885 58999999999653
|
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=153.06 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=108.1
Q ss_pred CCHHHHHHHhhcCCCCC---C--CCCCC---ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---G--KGRQM---PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~--~G~~~---~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++.....+. . .|... ..|+.. ...+++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 359 i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~i~G 434 (576)
T PRK08611 359 IKPERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAF----PDRQAIAICG 434 (576)
T ss_pred cCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhC----CCCcEEEEEc
Confidence 56677777775544331 1 12211 112222 22344432 489999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc---------cCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~---------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|++. ..+|.+|+++++|++ +|++|++|++.... .......||.++|++||+++.+|+ +++++.
T Consensus 435 DGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~ 510 (576)
T PRK08611 435 DGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELD 510 (576)
T ss_pred ccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHH
Confidence 9999864 355999999999955 55555567753210 111235799999999999999997 799999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.+++++++ .++|++||+.+.+
T Consensus 511 ~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 511 PAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred HHHHHHHh----CCCCEEEEEEeCC
Confidence 99988875 5899999999965
|
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=152.14 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=92.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccc---------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 124 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~---------~ 124 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . ++|.+|+++++|+++||.||+ |++... .
T Consensus 420 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~ 493 (574)
T PRK06882 420 AGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRH 493 (574)
T ss_pred cccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcc
Confidence 589999999999999986 67899999999999864 3 569999999999777666665 554211 0
Q ss_pred cCc--cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... ....|+.++|++||+++++|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 494 SQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 111 124689999999999999998 788999999888862 3789999999975
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.7e-16 Score=153.90 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----cccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..+++++....++ ...+.+.+ .++. ..+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 372 i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv~i~G 447 (572)
T PRK06456 372 LKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLAR----PDKVVVDLDG 447 (572)
T ss_pred cCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhC----CCCeEEEEEc
Confidence 6677777777554432 11222211 1221 123455543 589999999999999986 6789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC----------cc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD----------QF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~----------~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|+++++|+++||.|| +|++....+. .. ...||.++|++||+++.+|+ ++++
T Consensus 448 DG~f~m~-~-~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 523 (572)
T PRK06456 448 DGSFLMT-G-TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYED 523 (572)
T ss_pred cchHhcc-h-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHH
Confidence 9999864 3 45999999999966555555 5776431110 11 24699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++ .++|+|||+.+.+
T Consensus 524 L~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 524 IEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHHHHHh----CCCCEEEEEEeCc
Confidence 9999988875 5899999999975
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=153.21 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=108.6
Q ss_pred CCCHHHHHHHhhcCCCC--CCCCCCC-----ccccCCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 17 GFSMQEFANQCFGNKAD--YGKGRQM-----PIHYGSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~--~~~G~~~-----~~h~~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
++.+..++.++....++ ...+.+. ..++...+..++.. .|+||+++|.|+|+++|. ++++|++++||
T Consensus 382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~----p~~~vv~i~GD 457 (585)
T CHL00099 382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAH----PNELVICISGD 457 (585)
T ss_pred CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhC----CCCeEEEEEcc
Confidence 36677778777654332 1122221 11222233445543 589999999999999986 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc---------cC---ccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI---------SD---QFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~---------~~---~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
|+|++. ..+|.+|+++++|+++||.||+ |++.... .. .....|+.+++++||+++++|+ ++++
T Consensus 458 G~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~e 533 (585)
T CHL00099 458 ASFQMN--LQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKD 533 (585)
T ss_pred hhhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999853 3559999999999777666665 5542110 00 1124689999999999999998 7889
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++ .++|+|||+.+.+
T Consensus 534 l~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 534 LKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHHHHHh----CCCCEEEEEEECC
Confidence 9888888875 6899999999963
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=151.56 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=106.7
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccCCC-CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYGSN-KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~~~-~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....+.. ..+.+. ..|+..+ +..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 375 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~----p~~~vv~i~G 450 (571)
T PRK07710 375 IKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAK----PDETVVAIVG 450 (571)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEEc
Confidence 56667777765543221 112121 1133222 2344433 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-----c------CccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI-----S------DQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~-----~------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ++| |++|+++++|+++ |++|++|++.... . ......|+.++|++||+++.+|+ +.++
T Consensus 451 DGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 526 (571)
T PRK07710 451 DGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELE 526 (571)
T ss_pred chHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999863 455 9999999999655 5555557754211 0 11134689999999999999998 6888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++ .++|++||+.+.+
T Consensus 527 l~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 527 AKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHHHHh----CCCCEEEEEEecC
Confidence 8888887775 6899999999975
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=153.01 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=92.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc----CccC
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS----DQFR 129 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~----~~~~ 129 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++ |++|++|++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999986 68899999999999853 3559999999999555 55555688643211 1123
Q ss_pred cccHHHHHhhcC-----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 130 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 130 ~~d~~~~a~a~G-----~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
..||.++|++|| +++.+|+ +++++.+++++|++. +.++|+|||+++.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 478999999995 8999998 789999999998742 2488999999984
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=152.69 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=94.9
Q ss_pred CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccc
Q 022717 48 KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI 124 (293)
Q Consensus 48 ~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~ 124 (293)
+.+++.. .|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++|| +|++|++....
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~ 489 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQW 489 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHH
Confidence 3455543 489999999999999986 68899999999999864 355999999999966555 55557643210
Q ss_pred ---------cCc-cC--------cccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 ---------SDQ-FR--------SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ---------~~~-~~--------~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... .. ..||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 490 EDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred HHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 11 2699999999999999997 79999999999876 5789999999964
|
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=151.33 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=107.8
Q ss_pred CCHHHHHHHhhcCCCCC--CCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY--GKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~--~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++.++....++. ..+.+. ..|+.. .+..++.. .|+||+++|.|+|+++|. ++++|||++||
T Consensus 366 l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GD 441 (561)
T PRK06048 366 IKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGK----PDKTVIDIAGD 441 (561)
T ss_pred cCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhC----CCCcEEEEEeC
Confidence 45666777776544331 112111 113322 23445543 479999999999999986 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEE-eCCccccccc---------c-Cc-cCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPI---------S-DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~-NN~~~~~~~~---------~-~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
|+|++. . .+|.+|+++++|+++||. |++|++.... . .. ....|+.++|++||+++.+|+ ++.++
T Consensus 442 G~f~m~-~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el 517 (561)
T PRK06048 442 GSFQMN-S-QELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEV 517 (561)
T ss_pred chhhcc-H-HHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHH
Confidence 999864 3 459999999999665554 4457653210 0 11 135789999999999999998 78899
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.+++++|++ .++|+|||+.+.+
T Consensus 518 ~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 518 RPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHHHh----CCCCEEEEEEecC
Confidence 999999885 5899999999965
|
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=150.84 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=92.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc-----C--
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS-----D-- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~-----~-- 126 (293)
.++||+++|.|+|+++|. +++.|+|++|||+|++. ..+|.+|+++++|+++ |++|++|++....+ .
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 579999999999999886 78899999999999853 3459999999999665 55555576532110 0
Q ss_pred --ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 127 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 127 --~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.....||.++|++||+++.+|. +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1134689999999999999997 79999999988875 5789999999865
|
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=145.87 Aligned_cols=130 Identities=21% Similarity=0.261 Sum_probs=107.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHh-hcCCCEEEEEEeCCccccccccCc-----
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ----- 127 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~-~~~lpvi~vi~NN~~~~~~~~~~~----- 127 (293)
.+|+-++++++|+|+|.|+.+++.++.||+++||||++-|+.+||||.|. ..+-|+|+|++||..+|+.+....
T Consensus 113 ~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~ 192 (627)
T COG1154 113 GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLA 192 (627)
T ss_pred ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHH
Confidence 46899999999999999999999999999999999999999999999998 445689999999999988554210
Q ss_pred --cC----------c------------------c-cH------HHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhcc
Q 022717 128 --FR----------S------------------D-GA------VVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGE 169 (293)
Q Consensus 128 --~~----------~------------------~-d~------~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~ 169 (293)
.. . . .+ ..+++.+|+.++- +||||++++..+++.+.+ .
T Consensus 193 ~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~ 268 (627)
T COG1154 193 RLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----L 268 (627)
T ss_pred HHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----C
Confidence 00 0 0 00 1267889999986 899999999999888876 6
Q ss_pred CCcEEEEEEeecCCCCCC
Q 022717 170 GRPILIEALTYRVGHHTT 187 (293)
Q Consensus 170 ~gP~lIe~~t~R~~gHs~ 187 (293)
++|+||+++|-+..|...
T Consensus 269 ~gPvllHv~T~KGKGY~p 286 (627)
T COG1154 269 KGPVLLHVVTKKGKGYKP 286 (627)
T ss_pred CCCEEEEEEecCCCCCCh
Confidence 999999999987766543
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=150.36 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=108.1
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----cccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....... ..+.+. ..++ ...+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 352 ~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv~i~G 427 (548)
T PRK08978 352 IYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSG 427 (548)
T ss_pred cCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhC----CCCcEEEEEc
Confidence 56667777665544321 112211 1122 1233455543 489999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------c-Ccc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~-~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|+++++|+++ |++|++|++.... . ... ...||.++|++||+++.+|+ ++++
T Consensus 428 DG~f~~~-~-~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~e 503 (548)
T PRK08978 428 DGSFMMN-V-QELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQ 503 (548)
T ss_pred cchhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999864 3 459999999999555 5555567653211 0 111 24689999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+.++++++++ .++|+|||+.+.+.
T Consensus 504 l~~al~~a~~----~~~p~lIeV~id~~ 527 (548)
T PRK08978 504 VEAALDTLLN----SEGPYLLHVSIDEL 527 (548)
T ss_pred HHHHHHHHHh----CCCCEEEEEEecCc
Confidence 9999988875 58899999999753
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=149.65 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=96.7
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~ 125 (293)
.+++.. .|+||+++|.|+|+++|. ++++|+|++|||+|++. ++| |.+|+++++|+++||.||+ |++....+
T Consensus 410 ~~~~~~~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q 483 (564)
T PRK08155 410 RQWLTSGGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQ 483 (564)
T ss_pred CeEEeCCCcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHH
Confidence 455543 479999999999999986 67899999999999874 555 9999999999777666665 87643211
Q ss_pred ----------Ccc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 ----------DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ----------~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... ...|+.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 484 SLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred HHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 24689999999999999998 78899888888875 5889999999964
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=148.90 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=91.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccc------c-c-cc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T-P-IS 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~------~-~-~~ 125 (293)
.|+||+++|.|+|+++|. +++||+++|||+|++. . .+|.||+++++|+++||.||+ |... . . ..
T Consensus 416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~-~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-G-MEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-H-HHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 589999999999999972 6789999999999864 3 449999999999777777775 4211 0 0 00
Q ss_pred Ccc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... ...||.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 111 35689999999999999997 89999999998875 5789999999864
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=148.84 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=107.9
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..|+.. .+..++.. .|+||+++|.|+|+++|. ++++|||++|
T Consensus 365 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vv~i~G 440 (563)
T PRK08527 365 LKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVINFTG 440 (563)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEec
Confidence 4556677766554433 1112221 112222 23445543 489999999999999986 6788999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccccc----------Ccc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----------DQF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~----------~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. .+| |.+|++++||+++||.|| +|++....+ ... ...|+.++|++||+.+++|+ ++++
T Consensus 441 DG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~e 516 (563)
T PRK08527 441 DGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEE 516 (563)
T ss_pred Cchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999873 455 999999999966655555 566532110 011 23689999999999999997 7889
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+.+++++|++ .++|+|||+.+.+.
T Consensus 517 l~~al~~a~~----~~~p~lieV~v~~~ 540 (563)
T PRK08527 517 FDKALKEALE----SDKVALIDVKIDRF 540 (563)
T ss_pred HHHHHHHHHh----CCCCEEEEEEECCc
Confidence 9998888875 58899999999763
|
|
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=135.49 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccccCccHHHHHHHHHhh-hcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----
Q 022717 54 VSSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 126 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k-~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~---- 126 (293)
..++||+++|.|+|+++|.- ...++++|||+.|||++. +| +.+ +.++.++++|+++||.||+ |++......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 34899999999999988711 113688999999999985 44 444 7778889999777666665 664321110
Q ss_pred ------------ccCcccHHHHHhhcCceEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 ------------~~~~~d~~~~a~a~G~~~~~---VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.....|++++|++||+++++ |+ +++++..++++|++ +.++|+||++.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 12346899999999999986 65 78999999988884 2588999999864
|
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=138.17 Aligned_cols=118 Identities=20% Similarity=0.151 Sum_probs=92.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCC-ccccccccCccCcc
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 131 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~-~~~~~~~~~~~~~~ 131 (293)
..|+||+++|.|+|+++|. ++++|||+.|||++.+ ...+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3699999999999999986 6789999999999974 3456999999997 7776666665 65543222222357
Q ss_pred cHHHHHhhcCc-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 132 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 132 d~~~~a~a~G~-~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
|+.++|++||+ .+++|+ +++++.++++++.+ .++|+|||+++....
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 89999999997 567775 89999999998864 588999999986543
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=148.87 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++. ..+.+. ..++.. .+..++.. .|+||+++|.|+|+++|. ++++|++++|
T Consensus 363 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~----~~~~vv~~~G 438 (558)
T TIGR00118 363 IKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAK----PESTVICITG 438 (558)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhC----CCCcEEEEEc
Confidence 56667788776655431 122221 112222 23445543 479999999999998885 6789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc----------c-CccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----------S-DQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~----------~-~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. .. +|.+|+++++|+++||.||+ |++.... . ......|+.++|++||+++++|+ ++++
T Consensus 439 DG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~ 514 (558)
T TIGR00118 439 DGSFQMN-LQ-ELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEE 514 (558)
T ss_pred chHHhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999873 44 59999999999777777776 4532200 0 11124689999999999999998 6889
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++++++ .++|+|||+.+.+
T Consensus 515 l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 515 LDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred HHHHHHHHHh----CCCCEEEEEEeCC
Confidence 9999998886 4899999999964
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=136.20 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=87.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccc-hHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~-G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~------ 126 (293)
.+++|.++|.|+|+++|. +++.||++.|||++++ | ...+.+|+++++|+++||.||+ |++...+..
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 368999999999999886 7899999999999853 3 2337779999999776666664 676431110
Q ss_pred ---------c-cCcccHHHHHhhcCceEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 ---------Q-FRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 ---------~-~~~~d~~~~a~a~G~~~~---~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
. ....|+.++|+++|+.++ +|. +++++.+++++|++ .+||+|||+.+.
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 0 123477999999999975 565 89999999999986 689999999763
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=149.50 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=105.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++...... ...+.|. ..++.. .+..++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 369 l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~----p~~~Vv~i~G 444 (566)
T PRK07282 369 VQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIAN----PDKEVILFVG 444 (566)
T ss_pred cCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheec----CCCcEEEEEc
Confidence 5677777776553332 1122221 112222 23445543 589999999999999886 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------c-Ccc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~-~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|+++++|+++ |++|++|++.... . ..+ ...||+++|++||+.+.+|+ ++.+
T Consensus 445 DG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 520 (566)
T PRK07282 445 DGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPET 520 (566)
T ss_pred chhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHH
Confidence 9999863 3459999999999555 5555567764211 1 112 34689999999999999997 7888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++ +++ .++|+|||+.+.+
T Consensus 521 l~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 521 LAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred HHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 888885 332 4899999999965
|
|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=151.38 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=107.2
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++...... ...+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.|+|++|
T Consensus 398 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~----p~~~Vv~i~G 473 (612)
T PRK07789 398 LAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGR----PDKEVWAIDG 473 (612)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccC----CCCcEEEEEc
Confidence 6667777776553322 1122221 112222 22345533 479999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------c-Ccc-----CcccHHHHHhhcCceEEEEeCC
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------S-DQF-----RSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~-~~~-----~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
||+|++. ..+|.+|++++||+++ |++|++|++.... . ... ...||.++|++||+++++|+
T Consensus 474 DG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~-- 549 (612)
T PRK07789 474 DGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE-- 549 (612)
T ss_pred chhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--
Confidence 9999853 3569999999999555 5555568753211 0 001 12689999999999999997
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 151 DALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 151 D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+++++..++++|++. .++|+|||+.+.+
T Consensus 550 ~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 550 REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 899999999999863 3789999999965
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-15 Score=146.61 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=91.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-c--cccc------ccc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIST------PIS 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~--~~~~------~~~ 125 (293)
.|+||+++|.|+|+++|. ++.||+++|||+|++. .. +|.+|+++++|+++||.||+ | .... ...
T Consensus 423 ~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~-~~-EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFS-GM-EVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhcC-----CCcEEEEecCcccccc-HH-HHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 589999999999999982 6789999999999863 34 49999999999888777776 3 1110 000
Q ss_pred -Cc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 -DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 -~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. .+..||.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135799999999999999997 79999999999875 5889999999854
|
|
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=132.89 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=97.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc-------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~------- 125 (293)
.+++|.++|+|+|+++|. +++.||++.|||++ ++|. ..|.+|+++++|+++||.||+ |+++..+.
T Consensus 69 ~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g 142 (301)
T PRK05778 69 HTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEG 142 (301)
T ss_pred chhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCC
Confidence 478999999999999886 78999999999997 4552 349999999999766666664 66543211
Q ss_pred ---------CccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec--CCCCCCCCCCCC
Q 022717 126 ---------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR--VGHHTTSDDSTK 193 (293)
Q Consensus 126 ---------~~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R--~~gHs~~Dd~~~ 193 (293)
......|+.++|+++|+.++ ++.-.++.++.+++++|++ .+||+|||+.+.= +.+. .+.
T Consensus 143 ~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~-----~~~ 213 (301)
T PRK05778 143 SKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGR-----NTS 213 (301)
T ss_pred cccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCc-----CCc
Confidence 00124589999999999986 3344489999999999886 5899999987621 1221 223
Q ss_pred CCChHHHHHHH
Q 022717 194 YRPVDEIEWWR 204 (293)
Q Consensus 194 Yr~~~e~~~~~ 204 (293)
++++.++.+|-
T Consensus 214 ~~~~~~~~~~~ 224 (301)
T PRK05778 214 TKSPAYMREYY 224 (301)
T ss_pred ccCHHHHHHHH
Confidence 45566666664
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=147.10 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCcccccccc
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~ 125 (293)
..++. ..++||+++|.|+|+++|. + +++|+++|||+|++ ...+|.||+++++|++ ||++|++|++....+
T Consensus 394 ~~~~~~~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~ 466 (535)
T TIGR03394 394 AGLMAPGYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQ 466 (535)
T ss_pred CcEECcCccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhc
Confidence 34443 2589999999999999985 3 45688999999985 3355999999999955 555555687653221
Q ss_pred C-----ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 126 D-----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 126 ~-----~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
. .....||.++|++||+++.+|+ +++++..++++|++. .++|+|||+.+.
T Consensus 467 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 521 (535)
T TIGR03394 467 PESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLP 521 (535)
T ss_pred cCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECC
Confidence 1 1235799999999999999998 789999999998852 355899999874
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-15 Score=147.58 Aligned_cols=121 Identities=25% Similarity=0.338 Sum_probs=94.6
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~- 124 (293)
..++.. .|+||+++|.|+|+++|. +++.|||++|||+|++. . .+|.+|+++++|+++||.|| +|++....
T Consensus 410 ~~~~~~~~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~ 483 (586)
T PRK06276 410 RSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-S-QELATIAEYDIPVVICIFDNRTLGMVYQWQ 483 (586)
T ss_pred CeEEcCCCccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHH
Confidence 455543 479999999999999985 67899999999999864 3 45999999999966655555 57653211
Q ss_pred --------c-Ccc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --------S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --------~-~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. ... ...|+.++|++||+.+.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 484 NLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred HHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0 011 24689999999999999997 79999999998875 5889999999854
|
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=132.94 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=89.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~-------- 125 (293)
.+.+|.++|.|+|+++|. +++.||++.|||++..-.+ ..|.+|+++++|+++||.||+ |++..-+.
T Consensus 59 ~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~-~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 59 HTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGG-NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGF 133 (280)
T ss_pred CcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcH-HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCc
Confidence 467999999999998875 7899999999999862113 349999999999777766665 66532110
Q ss_pred --------CccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 --------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 --------~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
......|+.++|+++|++++.. .-.++.++.+++++|++ .+||+|||+.+
T Consensus 134 ~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 134 KTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred ccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0112358999999999998873 34589999999999996 58999999976
|
|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-15 Score=147.48 Aligned_cols=113 Identities=22% Similarity=0.183 Sum_probs=88.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---c-----
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---S----- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---~----- 125 (293)
.+.||+++|.|+|+++| ++++|||++|||+|++. . .+|.+|+++++|+++||.|| +|++.... +
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~-~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-L-NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-c-HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 37789999999999864 2 45999999999965555555 57643211 0
Q ss_pred ----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 126 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 126 ----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
......||.++|++||+++++|+ +++++.+++++|++ .++|+|||+.+.
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~id 549 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKTN 549 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeCC
Confidence 01134689999999999999997 79999999999874 589999999874
|
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=129.48 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=91.3
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceEEEEeCcc-cccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----
Q 022717 53 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 126 (293)
Q Consensus 53 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG-a~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~---- 126 (293)
...+++|.++|+|+|+++|. ++..||++.||| ++.+|. ..|.+|+++|+|+++||.||+ |+++.-+..
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 34688999999999999885 788999999999 688764 349999999999777666665 665431110
Q ss_pred ---c-----c----CcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 ---Q-----F----RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 ---~-----~----~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. . ...|+.++|+++|++.+. ....++.++.+++++|++ .+||+|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 013899999999998665 455799999999999986 68999999975
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=143.65 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=105.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc--------cc
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP--------IS 125 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~--------~~ 125 (293)
..||-+.++++|+|+|.|+.+++.+..||+++||||+.-|+.+|+||.|+..+-++|+|++||+.+|+.+ ..
T Consensus 187 ~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG 266 (701)
T PLN02225 187 GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASIS 266 (701)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999876 11
Q ss_pred Cc--------------------------cC--cccH---------------H-HHHhhcCceEEE-EeCCCHHHHHHHHH
Q 022717 126 DQ--------------------------FR--SDGA---------------V-VKGRAYGVRSIR-VDGNDALAIYSAVH 160 (293)
Q Consensus 126 ~~--------------------------~~--~~d~---------------~-~~a~a~G~~~~~-VdG~D~~~v~~a~~ 160 (293)
.. .+ ...+ . .+++.+|+.++- |||||++++..+++
T Consensus 267 ~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~ 346 (701)
T PLN02225 267 ALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLR 346 (701)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHH
Confidence 00 00 0000 1 356888998886 89999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCC
Q 022717 161 AAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
++.+. ..++|+||+++|-+..
T Consensus 347 ~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 347 EVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHcC--CCCCCEEEEEEecCCC
Confidence 88763 1249999999997654
|
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=127.62 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=87.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccc-ccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccccc-------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa-~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~------- 125 (293)
.+++|.++|+|+|+++|. +++.||++.|||+ ++.|.. .|.+|+++++|+++||.|| .|++.....
T Consensus 68 ~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~~--eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGGN--HFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCHH--HHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 378999999999999885 7899999999996 776633 3999999999966655555 576643111
Q ss_pred Cc---------cCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 DQ---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 ~~---------~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.. ....++.++|.++|...+. +.-.++.++.+++++|++ .++|+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 0125789999999998764 344579999999999986 58999999975
|
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-14 Score=127.54 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=84.5
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC-------
Q 022717 56 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 126 (293)
Q Consensus 56 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~------- 126 (293)
+.+|.++|+|+|+++|. +++.||++.|||++. +|. ..|.+|+++++|+++||.||+ |++......
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 56899999999998885 789999999999973 553 349999999999777666664 666432110
Q ss_pred -c--------c--CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 -Q--------F--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 -~--------~--~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. . ..+++..+|.++|+.....- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 02346677888887666522 489999999999986 68999999975
|
Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=136.67 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=91.5
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC--
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~-- 126 (293)
.++...++||+++|.|+|+++|. ++++||+++|||+|.+.... +|.+|.++++|+++||.|| .|++......
T Consensus 397 ~~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~-eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~ 471 (595)
T TIGR03336 397 GTVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIP-GLINAVYNKANITVVILDNRITAMTGHQPNPG 471 (595)
T ss_pred cccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHH-HHHHHHHcCCCeEEEEEcCcceeccCCCCCCC
Confidence 34444689999999999998885 68899999999999752234 4899999999966655555 6776542211
Q ss_pred --------ccCcccHHHHHhhcCceEEEEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 --------QFRSDGAVVKGRAYGVRSIRVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 --------~~~~~d~~~~a~a~G~~~~~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.++++++|+++++|. -.|..++.++++++++ .++|++|++..
T Consensus 472 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 472 TGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 0124689999999999999985 3455677888888875 58899999965
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-13 Score=129.21 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=94.6
Q ss_pred CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccc
Q 022717 48 KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPI 124 (293)
Q Consensus 48 ~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~ 124 (293)
...+++. +|++|+.+|+|+|+++|. +++++|.|+||||++. .-+++.+..+|+| |+|||++|+||.|..-.
T Consensus 401 ~~~~i~Q~lWGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~I 474 (557)
T COG3961 401 GATFISQPLWGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAI 474 (557)
T ss_pred CCeEEcccchhhcccccHhhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehh
Confidence 3445553 899999999999999998 6799999999999984 4455999999999 69999999999887655
Q ss_pred cCcc------CcccHHHHHhhcCceEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 SDQF------RSDGAVVKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ~~~~------~~~d~~~~a~a~G~~~~~V--dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.... ..-|+.++.++||..-... .-...+.+..+++.+.+ ..+++.+|||++.+
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 4311 2357889999998743322 22244566666666664 35689999999865
|
|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.6e-12 Score=120.32 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=94.6
Q ss_pred CCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEE-eCC-ccccc
Q 022717 47 NKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNG-WAIST 122 (293)
Q Consensus 47 ~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~-NN~-~~~~~ 122 (293)
.+.+.+. ..|+||-|++.|+++|++. |++.|+|+.||++|... .+| +.|+++|||||+.||. ||+ |+...
T Consensus 419 ~Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~ 492 (571)
T KOG1185|consen 419 GPRRRLDAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDD 492 (571)
T ss_pred CcccccCCccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCc
Confidence 3444444 3689999998888888876 89999999999999753 344 9999999999776666 445 33322
Q ss_pred cc---------cCc------cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 123 PI---------SDQ------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 123 ~~---------~~~------~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. ..+ ....++.+.+++||..++.|+ .++++..+++++++ .+++|++|.+...+
T Consensus 493 ~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 493 DGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred ccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 11 111 234578899999999999998 89999999999886 46799999998754
|
|
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=111.71 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=97.7
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc--
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-- 125 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~-- 125 (293)
+.....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..| + ++|..|...+.++++||.||. |+.++-+.
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 33344688999999999999998876677899999999998 444 3 679999999999999888887 44331110
Q ss_pred --------------C-----ccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 --------------D-----QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 --------------~-----~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. .....|+..++.++|++++ +++-.|+.++.+++++|.+ .+||.||++.+
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 1124578999999999877 5677899999999999986 58999999976
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=142.29 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=89.4
Q ss_pred ccccccC--ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--CCCEEEEEEeCC-ccccccc----
Q 022717 54 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI---- 124 (293)
Q Consensus 54 ~~g~lG~--~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--~lpvi~vi~NN~-~~~~~~~---- 124 (293)
..|++|. ++|.|+|+++|. +++|+|++|||+|++. ..+|.+|+++ ++|+++||.||+ |++....
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~ 829 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAK 829 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCC
Confidence 3588998 599999999884 6789999999999853 3459999884 999766555554 6554211
Q ss_pred --cC----c----cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --SD----Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --~~----~----~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. . ....|+.++|++||+++.+|+ +++++..+++++.+ .++|+||||.|.|
T Consensus 830 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 830 RTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 0 124689999999999999998 79999998888874 5899999999954
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6e-11 Score=111.85 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=110.8
Q ss_pred CCHHHHHHHhhcCCCC------CCCCCCC-cc----ccCCCCC-Ccccc--cccccCccHHHHHHHHHhhhcCCCceEEE
Q 022717 18 FSMQEFANQCFGNKAD------YGKGRQM-PI----HYGSNKH-NYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVT 83 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~------~~~G~~~-~~----h~~~~~~-~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~ 83 (293)
+.|+.++..+-....+ .+.|-|. .| |+..++. .++.+ -|+||+++|+|+|+..|. ++.+||-
T Consensus 472 ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~----P~~iViD 547 (675)
T KOG4166|consen 472 IKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVAN----PDAIVID 547 (675)
T ss_pred cChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccC----cccEEEe
Confidence 5677777776433322 1234332 11 4555443 34443 479999999999998876 8999999
Q ss_pred EeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-ccccccc----------CccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 84 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 84 ~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
+-||++|.+. +.| |.++...++||-++|.||.- ++.+.-+ ....++++.++|+++|++..+|. .-
T Consensus 548 IDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV~--K~ 623 (675)
T KOG4166|consen 548 IDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRVT--KK 623 (675)
T ss_pred ccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchheee--hH
Confidence 9999999752 444 99999999998888888863 3322111 11235899999999999999997 56
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 153 LAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 153 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+++.+.+++.+. .+||+|+|+.+...
T Consensus 624 edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 624 EDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred HHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 788888888875 79999999998543
|
|
| >PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-10 Score=105.55 Aligned_cols=122 Identities=25% Similarity=0.370 Sum_probs=81.1
Q ss_pred CCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC----CEEEEE
Q 022717 38 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA----PVIFIC 113 (293)
Q Consensus 38 ~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l----pvi~vi 113 (293)
.|.++|......+.+...|-||++++.|.|+++ ++|+.+|+|++|||++.+|....+...-..++- -|+-|+
T Consensus 122 gGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPIL 197 (379)
T PF09364_consen 122 GGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPIL 197 (379)
T ss_dssp TSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEE
T ss_pred CCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceE
Confidence 457888887666777778899999999999875 459999999999999999865544332233332 277788
Q ss_pred EeCCccccccccC-ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHH
Q 022717 114 RNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 163 (293)
Q Consensus 114 ~NN~~~~~~~~~~-~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~ 163 (293)
.=|+|.|+.++-. ..+...+.+++++||+..+.|+|.|+.++...+..++
T Consensus 198 hLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 198 HLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp EE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred EecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 8899999877632 2345678999999999999999999998877665443
|
PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A. |
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=105.89 Aligned_cols=186 Identities=19% Similarity=0.199 Sum_probs=125.1
Q ss_pred CCCCCccccCCCC-CCccc-ccccccCccHHHHHHHHHhhhc-------CCCceEEEEeCcccccchHHHHHHHHHhhcC
Q 022717 36 KGRQMPIHYGSNK-HNYFT-VSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTE 106 (293)
Q Consensus 36 ~G~~~~~h~~~~~-~~~~~-~~g~lG~~lp~A~G~A~a~k~~-------~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~ 106 (293)
.|.|.++++.... ..++. .+.+||-|...|+=.|+-.|+- .++++|+||+|||++.++...+++.+|++.+
T Consensus 170 ~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~ 249 (887)
T COG2609 170 DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREK 249 (887)
T ss_pred cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhc
Confidence 3677777665433 34555 3689999999999988888863 3689999999999999999999999999999
Q ss_pred C-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEE--------------------------------------
Q 022717 107 A-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIR-------------------------------------- 146 (293)
Q Consensus 107 l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~-------------------------------------- 146 (293)
| +++|||+.|.-..+.|...... ...+..++++.||.++.
T Consensus 250 LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakd 329 (887)
T COG2609 250 LDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKD 329 (887)
T ss_pred CCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccc
Confidence 9 7999999998777666543210 11233344444444422
Q ss_pred -------------------------------EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 022717 147 -------------------------------VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 195 (293)
Q Consensus 147 -------------------------------VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 195 (293)
--|||+..|++|+++|.+. .++|++|-+.|.+.+|-..+- +.-.
T Consensus 330 GayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~PtvilA~TIKGyglg~~~--eg~n 404 (887)
T COG2609 330 GAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTVILAKTIKGYGLGEAA--EGKN 404 (887)
T ss_pred cHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceEEEEeeeccccCchhh--cccc
Confidence 2389999999999999874 358999999998776643221 1112
Q ss_pred ChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHH
Q 022717 196 PVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 230 (293)
Q Consensus 196 ~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~ 230 (293)
....+++. ..|-|+.||.++-= -++++|+++
T Consensus 405 ~aHq~kkm--~~~~l~~~Rdr~~i--pvsd~e~e~ 435 (887)
T COG2609 405 IAHQVKKM--TPDQLKEFRDRFGI--PVSDAELEE 435 (887)
T ss_pred hhhhhhcC--CHHHHHHHHhhcCC--CCchhhhhc
Confidence 22222211 23445666665421 245666555
|
|
| >KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.4e-10 Score=106.30 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=88.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCc----cC
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQ----FR 129 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~----~~ 129 (293)
+|++|+.+|.++|+++|. +++++++|+|||+++. .++| +.++.+|+|| +||+++|++|.|..-.... ..
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql-TvQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~I~ 487 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL-TVQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYNDIQ 487 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCcccee-eHHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccccc
Confidence 799999999999999998 5799999999999985 3444 9999999995 9999999999887544331 12
Q ss_pred cccHHHHHhhcCceE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 130 SDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 130 ~~d~~~~a~a~G~~~---~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.-|+.++.++||..- ....-....++..+.+.+.. .+.+++.+|||+..
T Consensus 488 ~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 488 NWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred cchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhh--cccCceEEEEEecC
Confidence 357888999998533 22221234566677777663 24678999999873
|
|
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=104.19 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=90.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCcccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~-------- 125 (293)
.+.||+-+.-++|+. ...+++-|++++||||++ +.+.+|.++..++.-++ ++++|-+|+.....+
T Consensus 443 fSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf 516 (617)
T COG3962 443 FSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASF 516 (617)
T ss_pred ccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchh
Confidence 578999888888875 456899999999999998 57778999999999855 456666776432211
Q ss_pred ----------CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 126 ----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 126 ----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
......||++.|++||+..++|. +++++.+++++|.+ ..++++|+++|...
T Consensus 517 ~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P~ 577 (617)
T COG3962 517 NNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDPK 577 (617)
T ss_pred hhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCCc
Confidence 12345689999999999999997 88888887777664 78999999998643
|
|
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.4e-10 Score=101.61 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=107.6
Q ss_pred ccCCCCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-c
Q 022717 43 HYGSNKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-A 119 (293)
Q Consensus 43 h~~~~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~ 119 (293)
|.. ++.+++. ..|++|+.+|.|+|+-.| .+++.++++.||=.|+ ...|+|...+.+|+|-|+|+.||.| +
T Consensus 405 hv~-~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylg 477 (592)
T COG3960 405 HVF-KPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLG 477 (592)
T ss_pred hhc-CCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHH
Confidence 443 3355553 368999999999998655 4889999999999998 5678899999999999999999987 1
Q ss_pred --------ccccccCcc------------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 120 --------ISTPISDQF------------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 120 --------~~~~~~~~~------------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++.....++ -..|-.+.++++|++.++|- +|.++..++.+|..-+.+..-|++||++.
T Consensus 478 lirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~il 555 (592)
T COG3960 478 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVIL 555 (592)
T ss_pred HHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHH
Confidence 111111110 12355678999999999996 89999999999999889999999999999
Q ss_pred ecCCCCCCC
Q 022717 180 YRVGHHTTS 188 (293)
Q Consensus 180 ~R~~gHs~~ 188 (293)
.|...-+++
T Consensus 556 ervtnismg 564 (592)
T COG3960 556 ERVTNISMG 564 (592)
T ss_pred HHhhccccc
Confidence 998766654
|
|
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=83.94 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=101.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccc-ccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccc-------ccc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa-~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~-------~~~ 125 (293)
.+.-|-..+.|.|+.+|. ++..|+++.|||. +..|.-+ |.-+.+.+.+|++||-||. |+.+. |..
T Consensus 69 hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 467888999999998887 5668999999995 5777544 8888999999888888886 54432 111
Q ss_pred C---------cc-CcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 022717 126 D---------QF-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 194 (293)
Q Consensus 126 ~---------~~-~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 194 (293)
. .. ...|+..++-++|.+.+ ++---++..+.+.+++|++ .+||.||++.+.= ++.-+. ..+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~sPC---~t~~~~-~~~ 214 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLSPC---PTGNGR-NTM 214 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEecCC---CCCCCc-ccc
Confidence 1 11 22378899999998766 5655679999999999997 5799999997621 111121 223
Q ss_pred CChHHHHHHH-hCCCcHHHHHHHHH
Q 022717 195 RPVDEIEWWR-TTQDPVTRFRKWIE 218 (293)
Q Consensus 195 r~~~e~~~~~-~~~dPi~~~~~~L~ 218 (293)
...++...+- ...+|+-++.....
T Consensus 215 ~~~~~~~~ave~g~~pl~~~~~~~~ 239 (294)
T COG1013 215 KTIEEAKLAVETGYWPLYRYEPGKA 239 (294)
T ss_pred hHHHHHHHHHhcCCceeeeccCcch
Confidence 3334433332 25677776665433
|
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=90.36 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=86.7
Q ss_pred CCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHH-hhcCC----CEEEE
Q 022717 38 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEA----PVIFI 112 (293)
Q Consensus 38 ~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A-~~~~l----pvi~v 112 (293)
.|.++|......+.+...|.||+++..|.|+++= .|+.++.|++|||+..+|...-+ ..+ ..++- .++-|
T Consensus 135 gGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplats-Whs~kf~np~~dGavLPI 209 (793)
T COG3957 135 GGIGSHVAPETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATS-WHSNKFLNPARDGAVLPI 209 (793)
T ss_pred CCcccccCCCCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccc-cccccccCccccCceeeE
Confidence 4577888876677777889999999999998764 58999999999997766643211 112 12221 37888
Q ss_pred EEeCCccccccccCc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHH
Q 022717 113 CRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 159 (293)
Q Consensus 113 i~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~ 159 (293)
+.-|+|.|+-++... .+..++.+++++||..-+.|+|.|+.+....+
T Consensus 210 L~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 210 LHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred EEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 889999998776432 23456889999999999999999998844433
|
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=83.93 Aligned_cols=114 Identities=22% Similarity=0.198 Sum_probs=86.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-cccccccC-----
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD----- 126 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~~----- 126 (293)
.+-.||.++++|-|++++. .+++|+++|||+|. .|. .+|..|...+.+++++|.+|.+ ++++.+..
T Consensus 426 ~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 3457888888888888775 37899999999995 443 3488888899998888888877 44432211
Q ss_pred -----ccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 127 -----QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 127 -----~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.....++.+..++.|+..+. ||-.|..++.+++++|++ ..+|.+|.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 12234678899999998876 677899999999999887 5889988654
|
|
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00029 Score=66.71 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred ceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-ccccc-------ccc---------CccCcccHHHHHhhc
Q 022717 79 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 140 (293)
Q Consensus 79 ~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~-------~~~---------~~~~~~d~~~~a~a~ 140 (293)
..|+++.|||.. ..|.- .|.-|...+.+|++||-||. |+.++ |.. ......|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~~--~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYG--GLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchh--hHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 66643 37677778888877777775 65431 111 112235888999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 141 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 141 G~~~~-~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
|.+++ ++- +.++.++.+++++|.+ .+||.||++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 98766 454 3589999999999986 59999999977
|
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-05 Score=76.63 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCcccccc--cccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccc--c
Q 022717 49 HNYFTVSS--TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAIST--P 123 (293)
Q Consensus 49 ~~~~~~~g--~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~--~ 123 (293)
.+.+++-| -+.+.++-|+|++.|. .+.++.++||=|+-.- .. +|-+......| +|+|++|||-+|-. |
T Consensus 413 ~~v~sNRGA~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD-~N-gLl~~k~~~~~ltIvv~NNnGGgIF~~Lp 485 (566)
T COG1165 413 YRVYSNRGASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHD-LN-GLLLLKKVPQPLTIVVVNNNGGGIFSLLP 485 (566)
T ss_pred ceeecCCCccccchhHHHHhhhhhhc-----CCceEEEEechhhhhc-cc-hHhhcCCCCCCeEEEEEeCCCceeeeecc
Confidence 34444422 4555688899999875 4569999999998421 11 24455666678 77888888887742 2
Q ss_pred cc-------Ccc---CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 124 IS-------DQF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 124 ~~-------~~~---~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+. ..+ ..-||...|+.||+.+.+++ ...++..++..+.. ..|-.+||++|.|-
T Consensus 486 ~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r~ 548 (566)
T COG1165 486 QAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDRS 548 (566)
T ss_pred CCCCcchHHHhcCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecChh
Confidence 11 111 13589999999999999987 67788888877764 46789999999763
|
|
| >PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=71.26 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=75.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-ccccccc--CccCc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 130 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~--~~~~~ 130 (293)
...||+..+.++|.+.+. .++.+|+++|||.|. .|.. +|--|...+.|++++|.+|.. +|++-+. ...+.
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 357888888888888763 346799999999994 4443 577788888998887777776 5554322 12222
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHH-----HH--------HHHHHHHHHhhccCCcEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALA-----IY--------SAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~-----v~--------~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+.+....++.|+..+.|-..|+.. +. +.+....+..|+.+|+++|..
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 334447789999888764345444 22 223333333335678888754
|
|
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0071 Score=49.73 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=66.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEe-CcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~-GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
..+|.|.+++. . ..++++. |.|..+ ..+.+..|...++|+++|+...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 45566666553 3 3333434 888764 4466778888899999999776643211 1111123445566666
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..-...+. ++.+....+.+|+..+....||++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 55555554 677788888888887777789999976
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0036 Score=68.07 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred ceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-cccc-------cccc---------CccCcccHHHHHhhc
Q 022717 79 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIS-------TPIS---------DQFRSDGAVVKGRAY 140 (293)
Q Consensus 79 ~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~-------~~~~---------~~~~~~d~~~~a~a~ 140 (293)
..++++.|||.. ..|.- .|.-+...+.+|.+||-||. |+.+ ||.. ......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~~--~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYG--GLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCcc--chHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999965 55533 37778888999777777775 5443 2211 112345888899999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 141 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 141 G~~~~-~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
|.+++ ++- |.++.++.+++++|.+ .+||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEECC
Confidence 98766 565 5689999999999986 699999999873
|
This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase. |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0064 Score=50.41 Aligned_cols=106 Identities=21% Similarity=0.108 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEe-CcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~-GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
...+|.|.+++. .+.-+++.+ |=|..+ ...++..|...++|+|+|.-+...........+ ..|..+..+.
T Consensus 46 A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~ 116 (155)
T cd07035 46 AVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRP 116 (155)
T ss_pred HHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHH
Confidence 345566666653 222233333 555553 456788888899999998876554322111111 2355566666
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~ 177 (293)
+--...+++ +++++...+.+|++.+... ++|+.|++
T Consensus 117 ~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 655567776 8889999999999998877 78999987
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.002 Score=69.38 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=80.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-cccccc--cCccCc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPI--SDQFRS 130 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~--~~~~~~ 130 (293)
...||+....++|.+.+. .++.+|+++|||.|. .|.. +|.-|...+.+++++|.+|.. +|++-+ ....+.
T Consensus 480 ~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~~ 553 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLSV 553 (1165)
T ss_pred eeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcch
Confidence 357888888889987753 346799999999994 4433 477788888998877776665 565432 222355
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~~a--------------~~~a~~~~r~~~gP~lIe~~ 178 (293)
.++....++.|+..+.|-..|+...... ++...+..|+.+|+++|...
T Consensus 554 ~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~ 615 (1165)
T PRK09193 554 PQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD 615 (1165)
T ss_pred hhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 6888999999998887654466655433 33333344457888887543
|
|
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0097 Score=50.34 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+.+. ++-.++++..|=|.++ ..-++..|...++|+|+|.-+........ ......|..++++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhhc
Confidence 3455666553 3345566666888775 23457788888999999987655432111 11112366777888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
...+++ +++++.+++++|+..++...||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 777887 8888999999999888878899999984
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=49.41 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
...+|.|.+++. .. ++++..|-|..+ ....|-.|...+.|+|+|+-+................+.....+.
T Consensus 53 A~~~A~g~~r~~----~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 53 AAEAAIGASAAG----AR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHhhC----Cc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-
Confidence 344455555432 22 666777888875 345577787888999999876544321110000111122223333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+...++. +++++...+++|+..++.+++|++|..
T Consensus 124 ~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 35666665 899999999999999999889999865
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th |
| >PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0065 Score=65.51 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=75.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-ccccccc--CccCc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 130 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~--~~~~~ 130 (293)
...||+.....+|.+... .++.+|.++|||.|. .|.. +|..|...+.+++++|.+|.. +|++-+. ...+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 357888888888887653 346799999999995 4433 477788888998887777765 5554322 22233
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~--------------~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+.++...++.|+..+.|-..|+..+. +.++...+..|+.+|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 44455779999987775333454433 333333334445778887754
|
|
| >PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.014 Score=49.58 Aligned_cols=110 Identities=21% Similarity=0.094 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
..-+|.|.+++. +.-.++++..|=|.++ ..-+|..|...+.|+|+|+-.-..........+ ...|...+++.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhccc
Confidence 345566766654 2233444444666654 233466788889999999988776544321111 123667788888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEEe
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALT 179 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~-r~~~gP~lIe~~t 179 (293)
.-...++. +++++..++++|+..+ ....+|+.|++..
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 88888886 7778888888888888 6679999999864
|
It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B .... |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.023 Score=47.92 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc-c--cCcc--C-cccHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-I--SDQF--R-SDGAV 134 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~-~--~~~~--~-~~d~~ 134 (293)
..-+|-|.+.+. .-.++++..|=|.++ ..-+|..|...+.|+|+|+-+........ . .... . ..|..
T Consensus 47 A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (162)
T cd07038 47 AGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFL 119 (162)
T ss_pred HHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHH
Confidence 344566666554 133444444777665 33457788888999999987654321111 0 0000 0 11456
Q ss_pred HHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 135 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 135 ~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+++.+.-...+|. +++++.+++++|+..+..+++|++|++
T Consensus 120 ~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 120 KMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 77777777777786 788999999999999988889999987
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.035 Score=46.74 Aligned_cols=108 Identities=16% Similarity=0.049 Sum_probs=69.0
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHh-hcCCCEEEEEEeCCccccccccCccCcccHH-HH
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQFRSDGAV-VK 136 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~-~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~~ 136 (293)
+.+..+|.|..++ .++.++|+.+=|-. ...-+|..|. ..+.|+|+|+-.-+.--.. .+.+.....+. ..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~-~~~q~~~g~~~~~~ 114 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEK-IPAQIPMGRATPKL 114 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCC-CccccchhhhhHHH
Confidence 4445556666543 34566777777732 3445677788 8899999998655441110 00111111121 22
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
....+++...++ +++++ .++.+|++.+.++++|+.|-+.
T Consensus 115 l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 115 LDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 355677888886 68899 9999999999999999998764
|
This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363). |
| >cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.044 Score=46.39 Aligned_cols=107 Identities=13% Similarity=0.049 Sum_probs=64.6
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.+.+. ++-.++++..|=|.++ ..-++..|...+.|+|+|+-+-........ .+...|...+++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTG--ANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCC--CCcccchhhhcccee
Confidence 34566666543 3344555555777775 234577788889999999876543321111 111234455566555
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 022717 142 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 178 (293)
Q Consensus 142 ~~~~~VdG~D~~~------v~~a~~~a~~~~r~~-~gP~lIe~~ 178 (293)
-...+|. ++++ +.+.+++|+..++.+ .||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 5556664 4444 677777787777766 489999874
|
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim |
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.15 Score=51.63 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-........ .+-..|...+++.+-
T Consensus 56 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKLT---GKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGTD--FFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHHh---CCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCCC--CccccCHHHHhhccc
Confidence 34566665443 3445566666888886 234577788889999999876544322111 111236667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
-...+|+ +++++..++.+|+..+....||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 6666776 78899999999998888888999999865
|
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.14 Score=51.62 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=78.6
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHh
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 138 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~ 138 (293)
+...-+|-|.|.+ .++-.++++..|=|+++ ..-.|..|..-+.|+|+|.-.-...... .+.+-..|...+++
T Consensus 49 q~Aa~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g--~~afQe~D~~~l~~ 120 (550)
T COG0028 49 QGAAFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIG--TDAFQEVDQVGLFR 120 (550)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccC--cchhhhcchhhHhh
Confidence 3334456666544 45667899999999996 3345888888999999886522211111 11122237777777
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
.+--..++|. +++++.+.+++|++.+.+++ ||++|++-.+
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 7777778887 89999999999999999876 9999998653
|
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.15 Score=51.23 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=73.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|.+. +.-.++++..|=|.++ . --++..|...+.|+|+|.-.............+...|...+++.+-
T Consensus 53 ~~mAdgyar~t---g~~gv~~~t~GPG~~N--~-~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vt 126 (554)
T TIGR03254 53 GYAAAAAGFLT---QKPGVCLTVSAPGFLN--G-LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFA 126 (554)
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHh--H-HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhh
Confidence 34456666553 3345666667998886 2 2357788888999999986544321100111122235667788877
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++.+.+.+|+..+.++ .||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 127 KAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 7788887 7889999999999888775 48899988753
|
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.1 Score=49.59 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH-H-HHh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-V-KGR 138 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~-~a~ 138 (293)
.+.+|+|+++| +.++++.+-++.+. -.+|.|.+|+-..+|+++++.+-. +-++- ..+....|.. . +..
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g-~t~~eq~D~~~~~~~~ 129 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLG-NIQPSQGDYFQAVKGG 129 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCC-CCcchhHHHHHHHhcC
Confidence 46678888876 45688888777776 578999999999999888777644 21111 1111112221 1 111
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 139 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 139 a~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
+.| .+.+..+-.|+.+++.....|++.+.+..-|++|-..++ -+|+.
T Consensus 130 ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 130 GHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 111 234445666999999999999999888889999988884 36764
|
|
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.14 Score=49.19 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH-HHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~~a~a 139 (293)
.+.+|+|+++| +.++++.+-=+++. -.+|.+.+++-..+|+|+++.+... .++.........|+. .+..+
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhccc
Confidence 46778888877 34566555444444 4578899999999998877776542 111111111122332 23333
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 140 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 140 ~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
+| .+.+.+...|+.+++.....|++.+.+..-|++|-...+ -+|+.
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 33 444556667999999999999999888899999998883 67764
|
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.2 Score=50.80 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... ...+...|...+++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhhee
Confidence 4455655543 2345566666888886 2345777888899999998322211000 001111255566776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...++. +++++...+.+|+..++...||+.|++-.
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 666665 78899999999999888889999999975
|
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.27 Score=49.16 Aligned_cols=112 Identities=17% Similarity=0.027 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc-cCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a 139 (293)
..-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-............. ....|...+++.
T Consensus 51 A~~mAdgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 51 AGFMADGYARVS---GKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAG 124 (535)
T ss_pred HHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhh
Confidence 344556665443 3345666777888886 234577888899999998865433211100000 111366777888
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
+--...+|. +++++.+.+.+|+..++.+ .||+.|++-.+
T Consensus 125 ~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 125 VAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred hceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 877777776 7999999999999988876 69999988743
|
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.27 Score=49.21 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc-cCcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G 141 (293)
-+|.|.|.+. ++-.++++..|=|.++ ..-++..|...+.|||+|+-+-........... ....|..++++.+-
T Consensus 55 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 3566666553 3345666677888886 234577788889999999864221111000000 01136667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
-...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 129 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 6677776 7888889999999887776 7999999875
|
|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.22 Score=50.38 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... ...+-..|...+++.+--
T Consensus 56 ~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccc
Confidence 3566666543 3455677777998886 2235777888899999998654332211 111222466677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+++|+..++.+ .||++|++-..
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 128 HSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 777786 8999999999999888877 49999998754
|
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.25 Score=49.60 Aligned_cols=108 Identities=16% Similarity=0.009 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-.-+.|+|+|+-.-....... ......|...+++.+--
T Consensus 53 ~mAdgyar~t---gkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKIT---GKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGH--DYFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHHh---CCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhcccee
Confidence 3456665543 3445566667888886 33457788888999999986533221111 11112255566666555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
...+|. +++++..++++|+..+....||+.|++-..
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 556665 788899999999988877889999999754
|
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.26 Score=49.76 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+... +.-.++++..|=|.++ .--++..|...+.|+|+|+-.-...........+...|...+++.+--
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhee
Confidence 3455555543 3344566666888886 223577888899999999865432210000111122356667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCH
Confidence 777786 7899999999999888775 5899999874
|
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=50.00 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+... +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-.-..... ....+...|...+++.+--
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~--~~~~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 53 HMADGFARVT---GRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTI--GLGGFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHHHh---CCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccC--CCCCCcccchhhhhhccee
Confidence 3455555443 3445566667888886 234577888889999998632211110 0111111255666776666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|. +++++...+++|+..+..++||++|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 125 YQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 666675 78899999999998888888999999865
|
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.38 Score=40.14 Aligned_cols=100 Identities=21% Similarity=0.190 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHH-HHhhcCCCEEEEEEeCCccc--cccccCccCcccHHHHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 137 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~-~A~~~~lpvi~vi~NN~~~~--~~~~~~~~~~~d~~~~a 137 (293)
.+++|.|+|+. + .++++++. ..|.+ ..++.|. .++.+++|+++++...+++. ..++.. ...+++ ..
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~--~~~~~a-~~ 119 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ--GIEDIA-LL 119 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccc--hHHHHH-Hh
Confidence 34556666643 2 34444444 45543 3444455 88999999999998776654 332221 112222 22
Q ss_pred hhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 138 RAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 138 ~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+ .+|.+.| .-.|+.++...++.|++ .++|++|-.
T Consensus 120 ~--~iPg~~v~~Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 120 R--AIPNMTVLRPADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred c--CCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 2 4455542 45689999999999986 467998754
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included |
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.18 Score=48.23 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=73.0
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHH--HHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcc
Q 022717 56 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH--AALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSD 131 (293)
Q Consensus 56 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~--Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~ 131 (293)
..=|.++++|.|+.+|. +++.++++=-.++.. .+. -+|.....|++|+++||-.-+.--. .|....+ ..
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn-~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~-G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGN-AVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ-GR 105 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchhh-hhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH-hH
Confidence 34577788888888873 344555543333321 111 1222256789999999988775321 1211111 12
Q ss_pred cHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 132 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 132 d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-..++.+++|++...++ .+.++...++.+|++++.+.++|+.|-+.
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 23467899999999995 25667888888888888888999887664
|
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.28 Score=47.39 Aligned_cols=113 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.+.+|+|+++| +.++++.+-=++++ ..+|.|.+|+-..+|+|+++.|-... ++.+......|+. .++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 36778888877 34566666555554 56899999999999988777644332 2222211122332 22333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
||-.+ -..|+.+.+.....|++.+.+..-|++|-...++.. |..
T Consensus 130 g~i~~--~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 130 GWMQF--YAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred CEEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 66333 346899999999999999888999999999888764 544
|
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.26 Score=49.84 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|-|.|... +.-.++++..|=|.++ ..-++..|-.-+.|||+|.-.-....... ..+-..|...+++.+--.
T Consensus 57 mAdgyar~t---g~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARAT---GKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 566666543 3445667777888886 23457788888999999986544322111 111123566677777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
..+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77776 7999999999999888877 49999999764
|
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.29 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-....... ..+-..|...+++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 34566666543 3334555567888886 23457788888999999975433322111 1111235566677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 6677775 88899999999998888764 999999865
|
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.35 Score=48.41 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCcc-CcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~-~~~d~~~~a~a~G 141 (293)
-+|.|.+... +.-.++++..|=|.++ ..-++..|...+.|+|+|+-.-..........+. ...|...+++.+-
T Consensus 57 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 57 YMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhc
Confidence 3566666554 2334556666888886 2345777888899999998542211100000011 1136667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 6777786 7888999999999888774 68999999764
|
|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.28 Score=49.62 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|-..+.|+|+|+-.-...... .......|...+++.+-
T Consensus 65 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 33566666543 3345666677888886 2345777888899999987543322111 11112236667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++.+.+++|+..++.+ .||+.|++-..
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 6777786 7999999999999988877 49999998653
|
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.35 Score=48.98 Aligned_cols=109 Identities=20% Similarity=0.139 Sum_probs=72.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+++. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... .......|...+++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhhc
Confidence 44566666543 3345666667888886 2345777888899999987532221111 11111235667777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..+..+ .||+.|++-.+
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 6777786 7888999999999888776 48999998753
|
|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.31 Score=49.53 Aligned_cols=108 Identities=14% Similarity=-0.002 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC-
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG- 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G- 141 (293)
-+|-|.|.+. +.-.++++..|=|+++ ..-++..|-..+.|||+|.-.-...... ...+...|...+++.+-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG--GHYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC--CCCCCccCHHHHHHHHHH
Confidence 3466666553 3345566666888886 2235777888899999998532221111 11111235556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..+..++||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4566676 788889999999988888889999998754
|
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.35 Score=49.32 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... ++-.++++..|=|+++ ..-+|-.|..-+.|||+|.-+-..... ....+-..|...+++.+-
T Consensus 73 a~aA~gyar~t---gk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARAT---GKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 34555655443 3445666667998886 224577888899999998864332111 011111235666677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-...+|+ +++++..++.+|+..+..+. ||++|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 5666776 88999999999999888776 999998864
|
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.29 Score=48.70 Aligned_cols=109 Identities=18% Similarity=0.082 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ...-..|...+++.+-
T Consensus 52 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARMA---GKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKY--DAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHHH---CCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCC--Ccccccchhhhhcccc
Confidence 34566666543 3345566677888775 22346678888999999986533221111 1111235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++.+.+++|+..++.+ .||++|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5666676 7889999999999988887 69999998764
|
|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.33 Score=49.04 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-+|..|-..++|||+|.-.-...... .......|...+++.+--
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccc
Confidence 3455666543 3445566666888775 2345777888899999998542221111 111112355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|+ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 135 WVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 677776 7889999999999888876 48999998754
|
|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.32 Score=49.31 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... ...+-..|...+++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhhe
Confidence 34566666554 3445667777888886 2345777888899999997543322111 11111235556677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...+|+ +++++.+++.+|+..++.++ ||+.|++-..
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 6677775 89999999999999888774 9999999753
|
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.4 Score=48.65 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+-..|...+++.+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 44556655431 3344556666888886 22357778888999999976544322111 11112356667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++..++++|+..++.+ .||+.|++-..
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 666775 8899999999999988876 48999999754
|
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.37 Score=48.96 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.|.+.. +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-.-....... ..+...|...+++.+--
T Consensus 55 ~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk 127 (588)
T TIGR01504 55 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSK 127 (588)
T ss_pred HHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhce
Confidence 34555554320 2334445556888876 22357778888999999986544332111 11222366777887776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
...+|. +++++.+.+++|+..++.+. ||++|++-..
T Consensus 128 ~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 128 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 777776 78999999999999888764 8999998764
|
Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. |
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.39 Score=48.93 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... ...+...|...+++.+-
T Consensus 82 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 34566666543 3445566667888886 2345777888899999998643322111 11111236666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..++.+ .||++|++-..
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 6667776 8999999999999888876 59999998753
|
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.41 Score=47.74 Aligned_cols=108 Identities=18% Similarity=0.016 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|+-......... ...-..|...+++.+--
T Consensus 57 ~mAdgYaR~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 57 GAADGYGRIA---GKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHHHh---CCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccc
Confidence 3455666543 3445666677888875 22346678888899999986533221111 11111366677776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
...+|+ +++++.+++++|+..+..+. ||++|++-..
T Consensus 129 ~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 129 WVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 556665 88999999999998877764 8999998754
|
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.32 Score=48.79 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=71.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|+|+|.-.-....... ......|...+++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 34566666553 3445666667888886 33457778888999999976443221111 1111124455566665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
-...+|+ +++++...+++|+..++.+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 5667776 7899999999999888876 4999999865
|
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.43 Score=47.80 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-+-...... .......|...+++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 34566665543 3344556666888886 2345777888899999998543322111 11111235666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++...+.+|+..+..+ .||+.|++-..
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 5566775 8899999999999888876 48999998753
|
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.38 Score=48.88 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=72.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|+.. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+...|...+++.+-
T Consensus 62 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARST---GKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhhe
Confidence 34456665543 3345666677888886 22457778888999999986544322111 1111235566677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence 5666776 8999999999999998887 49999988653
|
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.41 Score=48.34 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=72.0
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHh
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 138 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~ 138 (293)
....-+|.|.+.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-....... ...-..|...+++
T Consensus 63 ~~A~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~ 134 (571)
T PRK07710 63 QGAIHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITM 134 (571)
T ss_pred HHHHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhh
Confidence 33344566666543 3344566666888876 23457778888999999876544321111 1111235556666
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
.+--...+|. +++++...+++|+..++.+ .||+.|++-..
T Consensus 135 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 135 PVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 6655566665 7889999999999888876 49999999753
|
|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.43 Score=48.02 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ....-..|...+++.+-.
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 124 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITK 124 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccc
Confidence 3466666543 3345667777888886 2345777888899999997643221111 111112355667777777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|+ +++++...+.+|+..+... .||+.|++-..
T Consensus 125 ~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 125 HSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 777786 7889999999999888776 48999998653
|
Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. |
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.46 Score=47.80 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. ++-.++++..|=|.++ ..-++..|-..+.|||+|.-.-...... .......|...+++.+--
T Consensus 60 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~tk 131 (557)
T PRK08199 60 MMAEAYGKLT---GRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMAK 131 (557)
T ss_pred HHHHHHHHhc---CCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhhc
Confidence 4456665543 3345566666888886 2345777888899999997543321111 111112355566666654
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+|. +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 132 ~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 132 WVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 566664 8899999999999888877 5899998864
|
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.49 Score=47.68 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+...|...+++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 34466666554 2334455556888876 22357778889999999975433221111 1111124455566655
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5566675 8899999999999888877 59999999643
|
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.48 Score=47.91 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=71.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... ...+...|...+++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 44566666553 3344556666888886 2234777888899999987543322111 11112235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...+|+ +++++...+++|+..++.+. ||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 6677776 89999999999999888764 9999998654
|
|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.6 Score=47.35 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... .......|...+++.+--
T Consensus 73 ~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 73 HAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCcc
Confidence 3566666554 3344566666888876 2235777888899999987432211100 111112355666777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+.+|+..++.+ .||+.|++-..
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 677776 7889999999999988877 59999998764
|
|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.43 Score=47.88 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCccC-cccHHHHHhh
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGRA 139 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~~-~~d~~~~a~a 139 (293)
+|.|.|.+. +.-.++++..|=|.++. .-++..|...+.|||+|.-+......... ..+.. ..+....++.
T Consensus 53 ~Adgyar~t---g~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARYR---GTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHhh---CCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 455665543 34556677779988862 23577888889999999865432211100 01110 1123455665
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.--...+|. +++.+.+.+++|+..+....||++|++-..
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 544455565 677777778888877777789999999764
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.54 Score=47.46 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... .......|...+++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 4455665543 3345566666888876 2235777888899999997644332111 111112355667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+.+|+..+..+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 677776 8888999999999877775 59999999764
|
|
| >PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.32 Score=43.54 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=66.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc-ccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~-~~~~~~~~~~d~~~~a~a~ 140 (293)
+.+++|++++- .++++.+-=.+++ ...|.|.+++-.++|+++++.|-.-.-. .++.. ...|+ -.++.+
T Consensus 49 ~~~~~GAs~aG------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~-~~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAAG------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDL-MAARDS 117 (230)
T ss_dssp HHHHHHHHHTT--------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHH-HHTTTS
T ss_pred HHHHHHHHhcC------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHH-HHHHhc
Confidence 56677777752 3454444333333 4567889999999998887776543222 11111 11222 224466
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
||..+.. .|+.+.+.....|++.+.+..-|+++-...++. .|+.
T Consensus 118 ~~~vl~p--~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAP--SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 7776655 489999999999999999999999999988764 3554
|
This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B .... |
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.47 Score=45.61 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccCccCcccH-HHHHh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGR 138 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~~~~~~d~-~~~a~ 138 (293)
.+.+|+|+++| +.++++.+-=+++. -.+|.+.+|+...+|+++++.+-. -+...++.. ...|+ ..+..
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~--~q~D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRV--AQGDVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCcc--chHHHHHHhcC
Confidence 35667888776 34566665445554 457899999999999887666542 111112211 11233 22233
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 139 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 139 a~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
++| .+.+.+.-.|+.+++....+|++.+.+..-|++|-... +. +|+.
T Consensus 129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~ 176 (375)
T PRK09627 129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMY 176 (375)
T ss_pred CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCe
Confidence 332 23345677799999999999999988899999998887 34 6764
|
|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.74 Score=46.16 Aligned_cols=109 Identities=17% Similarity=-0.013 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-+-..........+ ..|...+++.+-
T Consensus 55 ~~~AdGyar~t---g~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKLT---RVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHhc---CCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence 34566666553 3334555555777775 234577888889999988754332211100111 135566677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++.+.+.+.+|+..+..+ .||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 6777776 6888889999998877765 58999998653
|
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.61 Score=47.10 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+... +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... ...+-..|...+++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 34556665543 3445667777988886 2235777888899999998653322111 11111124555667666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++..++.+|+..++.+ .||+.|++-..
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 6667776 7888999999999988876 49999998664
|
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.84 Score=46.19 Aligned_cols=107 Identities=14% Similarity=0.020 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|-|.+.. .++-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... .......|....++.+--.
T Consensus 53 ~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcceE
Confidence 45555543 33455667777888886 2345777888899999998654332111 1111112444556666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
..+|. +++.+...+.+|+..+....||+.|++-.+
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 55665 677888888888888777899999999754
|
Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. |
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.74 Score=46.39 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+... +.-.++++..|=|.++ ..-+|..|-..+.|||+|.-.-...... .......|...+++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcc
Confidence 44566665543 3345666667888886 2345777888899999987432221110 01111235556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
-...+|. +++++...+.+|+..++.+ .||+.|++-.
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 5566675 7889999999999888776 5899999964
|
|
| >TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.48 Score=47.91 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH-HHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~~a~a 139 (293)
.+.+|+|+++| +.++++.+-=.+++ ..+|.|.+|+-..+|+|+++-+-.- .++.........|+. .+.-+
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCC
Confidence 35667777766 34455555444554 5789999999999997766665432 222111111112322 12221
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 140 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 140 ~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.| .+.+.+...|+.+++....+|++.+.+..-|++|-...+.
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 11 2334456669999999999999999999999999998874
|
The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. |
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.73 Score=46.29 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|.|.+.+ .+.-.++++..|=|.++ ..-++..|...+.|+|+|.-......... ...-..|...+++.+--.
T Consensus 57 ~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (552)
T PRK08617 57 MAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITKY 128 (552)
T ss_pred HHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcce
Confidence 45555443 23345566666888886 22357778888999999875332211111 111123555667777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
..+|+ +++++..++.+|+..+..+ .||+.|++-..
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 129 SAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 77776 8889999999999888776 48999998753
|
|
| >PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.1 Score=43.61 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.+.+++|++++ +.++++.+-=.+++ ..+|.|.+|+-..+|+|+++.+-+.... ........|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i~~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAP--LNVNGDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCC--cCCCchHHHHHH-HhcC
Confidence 35667787776 33455555434443 5679999999999998888887765321 211111223322 3444
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEeecCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 186 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~--~gP~lIe~~t~R~~gHs 186 (293)
||.. +...|+.+++.....|++.+.+. .-|+++-...++. +|+
T Consensus 137 g~iv--l~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 137 GWIS--LCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred CeEE--EeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 5444 45669999999999999988766 7899998887643 554
|
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.86 Score=46.23 Aligned_cols=108 Identities=22% Similarity=0.177 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|... +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-.-...... ...+...|...+++.+--
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 65 HAADGYARST---GKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHHhc---CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCcee
Confidence 3455555443 3345566666888886 2235777888899999987543211110 011112245556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++.+.+++|+..++.+ .||+.|++-..
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 667776 7899999999999888765 48999998653
|
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.63 Score=47.04 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc----c--CccCc-ccHHH
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAVV 135 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~----~--~~~~~-~d~~~ 135 (293)
-+|-|.|... ++-.++++..|=|.++ ..-+|..|...+.|||+|.-.-........ . ..+.. .|...
T Consensus 64 ~~Adgyar~t---gk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALVT---GKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHhh---CCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 3455555543 3345566667888886 234577888889999999875433221100 0 00111 25566
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
+++.+--...+|+ +++++..++.+|+..++.+ .||++|++-.
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~ 180 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPR 180 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcH
Confidence 6676655566776 7889999999999988875 7999999874
|
|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.91 Score=45.77 Aligned_cols=109 Identities=20% Similarity=0.127 Sum_probs=69.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|+.. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-..... ....+...|...+++.+-
T Consensus 54 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARAS---GKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhhh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhccc
Confidence 34455555443 3445666677888886 223577788889999998753221110 001111224455666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...+|+ +++++..++++|+..++.+. ||+.|++-..
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5556665 89999999999999888764 8999998753
|
|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
Probab=92.87 E-value=1 Score=45.12 Aligned_cols=107 Identities=19% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|+-.-...... .......|...+++.+--.
T Consensus 51 ~Adgyar~t---g~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRIT---GKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHHh---CCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 455555433 3345666677888886 2235777888899999998643322111 1111123555666666445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
..+++ +++++...+.+|+..+... .||+.|++-..
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 55665 8889999999999887776 48999998754
|
Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. |
| >PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.95 Score=43.79 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.+.+++|++++ +.++++.+-=.++. ..+|.|.+|+-..+|+++++-|-..+. +..-.....|+. -.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hcccc
Confidence 36678888776 33455554333333 467999999999999888875544332 322111112322 23445
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEEEEeecCCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 187 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~--gP~lIe~~t~R~~gHs~ 187 (293)
||-.+. ..|+.+++.....|++.+.+.+ -|+++-...+|. +|+.
T Consensus 131 g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred CeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 665544 3689999999999998877433 799999999876 5653
|
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.1 Score=45.13 Aligned_cols=107 Identities=14% Similarity=-0.042 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-+-........ .+...|...+++.+-.
T Consensus 55 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~--~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 55 FAAGAEAQLT---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGSG--YFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHHhh---CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC--CccccChhhhccccee
Confidence 3466665543 2223333345777775 123467788889999999865333211111 1111244555665544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|+ +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP~ 161 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLPG 161 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 555565 78888888888888877778999999854
|
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.1 Score=45.78 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a 139 (293)
.++.|+|+|++ +.++|+.+ =+.|.+-.+.+-.+.++..++||++++...++.. ..++.. ...|++ --
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~--~~~dia---~l 431 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQ--GAFDIS---YL 431 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccc--cchHHH---HH
Confidence 34556676642 23444444 5667654444444678889999999998777642 122222 223433 22
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-.+|.++| .-.|+.++...++.|++. .++|++|...
T Consensus 432 r~iPgl~V~~Psd~~e~~~~l~~a~~~---~~~Pv~ir~~ 468 (617)
T TIGR00204 432 RCIPNMVIMAPSDENELRQMLYTGYHY---DDGPIAVRYP 468 (617)
T ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHhC---CCCCEEEEEc
Confidence 34455543 345888999988888852 3489988543
|
DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). |
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.4 Score=44.55 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=61.7
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHH
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 158 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a 158 (293)
.++++..|=|.++ ..-++..|...+.|+|+|.-........ .....+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444456888886 2245777888899999998543322110 1111233455666655566676 88899999
Q ss_pred HHHHHHHhhcc-CCcEEEEEEee
Q 022717 159 VHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 159 ~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
+.+|+..++.+ .||++|++-..
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHhcCCCceEEEecchH
Confidence 99999888875 69999998754
|
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.3 Score=44.29 Aligned_cols=109 Identities=17% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-.+........+ ...|...+++.+--
T Consensus 62 ~~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk 134 (530)
T PRK07092 62 GMADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVK 134 (530)
T ss_pred HHHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhccccc
Confidence 3566666543 3445555566888774 234577788889999988764333221100000 11244555666544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
...+| .+++++.+.+.+|+..++... ||+.|++-..
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 135 WSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred ceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 45556 478899999999998887774 7999998753
|
|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.3 Score=44.79 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCccCcc---cHHHH
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFRSD---GAVVK 136 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~~~~---d~~~~ 136 (293)
-+|-|.|.+. + -.++++..|=|+++ ..-++..|...+.|||+|.-.-........ ....... +....
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3455665543 3 45677777888886 223477788889999999865433211100 0000001 12244
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++.+--...+|. +++++.+.+++|+..++...||+.|++-..
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 555555566675 788888888888888888889999998654
|
|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.5 Score=37.22 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCccc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSDG 132 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~d 132 (293)
.++.|.|+|+. +.++++.+.=+.|..-.+.+-.+-++.+ ++||++++..-+++...++ .+..+
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t---hs~~~ 126 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ---HSQSL 126 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh---hhhhH
Confidence 35556666653 3355554333444332233323444444 5899999976665533333 12223
Q ss_pred HHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 133 AVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 133 ~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
+ .+.+++ |.+.| .-.|+.+....++.+++ .++|+++-
T Consensus 127 ~-a~lr~i--Pg~~V~~Psd~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 127 E-AWFAHI--PGLKVVAPSTPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred H-HHHhcC--CCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 2 344444 44442 34589999999888886 47898873
|
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain |
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.73 Score=44.88 Aligned_cols=108 Identities=18% Similarity=0.079 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-....... ......|..++++.+--
T Consensus 52 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhcc---CCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccc
Confidence 3456665543 3445666667888876 23457778888899999975433211110 00111245556666655
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~------v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. ++.+ +...+.+|+..+..+ .||+.|++-.+
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 555564 3333 666777777766664 48999999753
|
2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis. |
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.5 Score=44.50 Aligned_cols=107 Identities=18% Similarity=0.023 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|-|.|.+. +.-.++++..|=|.++ ..-++-.|-..+.|+|+|.-.-........ .+...|...+++.+--.
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGSG--FFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC--CccccChhhhcccceee
Confidence 455555443 2334445556788776 123477788889999999753322111100 01112334555555445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
..+|. +++++...+.+|+..+....||+.|++-..
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 56665 788888899999988887889999998653
|
|
| >PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.6 Score=34.96 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccc---hHHHHHHH-HHhhcCCCEEEEEEeCCccccccccCccCcccHHHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSE---GDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~---G~~~Eal~-~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
.++.|+|+|++-+ ...+++..++ .|.. -..++.+. ..+..++|+. |+..-+++.........+..++ ..
T Consensus 60 ~vg~a~GlA~~G~---~~~~~~~~f~--~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~-~~ 132 (178)
T PF02779_consen 60 MVGMAAGLALAGG---LRPPVESTFA--DFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDE-AI 132 (178)
T ss_dssp HHHHHHHHHHHSS---SEEEEEEEEG--GGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHH-HH
T ss_pred ccceeeeeeeccc---ccceeEeecc--ccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccc-cc
Confidence 4566777776631 1233444444 3432 23445454 6788899988 6666665443222222223333 33
Q ss_pred Hhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 137 GRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 137 a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.+++ |+.++. -.|+.++...++.+++. +.++|++|-..
T Consensus 133 ~~~iPg~~v~~--Psd~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVV--PSDPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE---SSHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred ccccccccccc--CCCHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 3443 555554 34899999999998862 24789998664
|
2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B .... |
| >TIGR00232 tktlase_bact transketolase, bacterial and yeast | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.6 Score=44.99 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred cccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhh
Q 022717 89 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 167 (293)
Q Consensus 89 a~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r 167 (293)
.|.+ -.++++.+++..++||++|....+++.........+..|++- .++. |+.+++ --|..++..+++.+++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~-lr~iPn~~v~~--PaD~~E~~~~~~~a~~--- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS-LRAIPNLSVWR--PCDGNETAAAWKYALE--- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH-HhcCCCCEEEe--eCCHHHHHHHHHHHHh---
Confidence 5554 556788899999999999998877764322211122333332 2332 444444 3488889998888884
Q ss_pred ccCCcEEEEEE
Q 022717 168 GEGRPILIEAL 178 (293)
Q Consensus 168 ~~~gP~lIe~~ 178 (293)
..++|++|-..
T Consensus 503 ~~~gP~~irl~ 513 (653)
T TIGR00232 503 SQDGPTALILS 513 (653)
T ss_pred cCCCcEEEEEc
Confidence 25789988553
|
This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. |
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.52 E-value=2 Score=43.81 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=67.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--CCCEEEEEEeCCccccccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
+.+|+|+++| +.++++.+-=.+++ ...|.|-.++.. .+|+|+++-|. -+-. +.+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~---~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMH---SSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCc---cchhhHhHHH-HHHh
Confidence 4567787776 33455554434443 345666555544 45777766654 2211 1111122322 4555
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
.+|+++ +-.|+.+++....+|++.+.+..-|++|-..+ .-+|+.
T Consensus 126 ~~~~vl--~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~ 169 (595)
T TIGR03336 126 AKIPCL--EPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMR 169 (595)
T ss_pred cCCeEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccce
Confidence 688855 44589999999999999999999999998875 345654
|
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=2.5 Score=41.75 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=62.4
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHh--------hcCCCEEEEEEeCCcccc
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAIS 121 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~--------~~~lpvi~vi~NN~~~~~ 121 (293)
+++...-.=...+++|+|+|++ .-++++.++.= .|.+=.+.+-.|.++ .+++||+|+..|.+++..
T Consensus 190 R~id~gIaEq~~vg~AaGlA~~-----G~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~ 263 (464)
T PRK11892 190 RVIDTPITEHGFAGIGVGAAFA-----GLKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARV 263 (464)
T ss_pred ceeecCccHHHHHHHHHHHHhC-----CCEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCC
Confidence 4444322223345567777664 23444444321 122223444556677 889999999888776543
Q ss_pred ccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 122 TPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 122 ~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.. +.+..++ .+.+.+ |+.++. -.|+.+....++.|++ .++|++|-
T Consensus 264 G~---hhs~~d~-a~~~~iPgl~V~~--P~d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 264 AA---QHSQDYA-AWYSHIPGLKVVA--PYSAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred CC---ccccCHH-HHHhhCCCCEEEE--eCCHHHHHHHHHHHhh----CCCcEEEE
Confidence 32 2222333 344433 454443 3488888888888885 47898873
|
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=2.4 Score=43.79 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+.+|.|+|+. +.-+++++.+. .|.+ -.++.+..++..+|||+||+...+++....-.... .+.+++---.
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq---~iedia~lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ---PVETLALLRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc---cHHHHHHHhc
Confidence 4456666651 22245555553 7765 66777999999999999999888876532222222 2344443334
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+|.+.| .--|..++..+++.|++ ..++|+.|-..
T Consensus 486 iPn~~V~~PaD~~E~~~~l~~al~---~~~gP~~irl~ 520 (661)
T PTZ00089 486 TPNLLVIRPADGTETSGAYALALA---NAKTPTILCLS 520 (661)
T ss_pred CCCcEEEecCCHHHHHHHHHHHHH---cCCCCEEEEec
Confidence 555543 34588889888888874 25789998763
|
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=2.2 Score=43.88 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHH-HHHhhcCCCEEEEEEeCCcc-ccccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal-~~A~~~~lpvi~vi~NN~~~-~~~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|++ .-+++++++ ..|.+ -.++.+ +.++..++|++|++...++. ..+++.. ...|++ --
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~~dia---~l 440 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GAFDLA---FL 440 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--ccHHHH---HH
Confidence 4556666652 234444444 35655 334444 66889999999999766653 1222222 223333 22
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-.+|.+.| --.|+.++..+++.|++. .++|++|-..
T Consensus 441 r~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 441 TNLPNMTVMAPRDEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 23444442 345888999999888852 3799998654
|
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.8 Score=42.57 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=59.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc-ccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~-~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|.|+|+. +.++|+.+ =..|.+=.+.+-.+.++..++|++++....++... +++.. ...|++-+..-=
T Consensus 334 vg~A~GlA~~------G~~p~~~~-f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~iP 404 (580)
T PRK05444 334 VTFAAGLATE------GLKPVVAI-YSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCIP 404 (580)
T ss_pred HHHHHHHHHC------CCeeEEEe-eHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcCC
Confidence 4456676663 23444444 44665433333556688899999999987775321 22221 223333222212
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
|+.++. -.|+.++..+++.|++. .++|++|..
T Consensus 405 ~l~V~~--Psd~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 405 NMVIMA--PSDENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCEEEe--eCCHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 444444 45899999999998862 378998855
|
|
| >PLN02683 pyruvate dehydrogenase E1 component subunit beta | Back alignment and domain information |
|---|
Probab=89.22 E-value=4.9 Score=38.33 Aligned_cols=112 Identities=20% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcC--------CCEEEEEEeCCccc
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAI 120 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~--------lpvi~vi~NN~~~~ 120 (293)
.+++...-.=...++.|+|+|++ ..++++++.. ..|.+=.+.+-.+-++.++ +||+|+..+ +...
T Consensus 74 ~R~~d~GIAEq~~vg~AaGlA~~-----G~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~ 146 (356)
T PLN02683 74 DRVLDTPITEAGFTGIGVGAAYA-----GLKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAA 146 (356)
T ss_pred CcEEECchhHHHHHHHHHHHHHC-----CCEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCC
Confidence 34444333333445667776664 2244444431 1222223444456667666 999999877 4322
Q ss_pred -cccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 121 -STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 121 -~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..++.. ..+ ....+.. |+.++. -.|+.++...++.|++ .++|++|-.
T Consensus 147 g~G~tH~---~~~-~a~lr~iPnl~V~~--Pad~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 147 GVGAQHS---QCF-AAWYSSVPGLKVLA--PYSSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred CCCCccc---cCH-HHHHhcCCCCEEEE--eCCHHHHHHHHHHHHh----CCCcEEEEE
Confidence 222221 112 2344443 455444 3488899998888875 478999853
|
|
| >PLN02234 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=88.99 E-value=2.9 Score=42.99 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|+|+|+. .-+++++++ +.|.+-.+.+-.+.++..++||+|++...++.. .+++.. ...|+ +-.-
T Consensus 412 Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~Di---a~lr 479 (641)
T PLN02234 412 VTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFDV---TFMA 479 (641)
T ss_pred HHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHHH---HHHh
Confidence 4456666553 234444443 455543444444677889999999998777531 222221 12232 2222
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 141 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 141 G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.+|.+.| .-.|+.++..+++.|... .++|++|-
T Consensus 480 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir 513 (641)
T PLN02234 480 CLPNMIVMAPSDEAELFNMVATAAAI---DDRPSCFR 513 (641)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHhC---CCCCEEEE
Confidence 3454443 335888888888887652 46899883
|
|
| >PLN02225 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=88.84 E-value=3.4 Score=42.91 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a 139 (293)
.+..|.|+|.. .-++++++. ..|.+=.+.+-.+-++..++||+|++..-++.. .+++. ....|++ --
T Consensus 435 aVt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH--~g~~Dia---~l 502 (701)
T PLN02225 435 AVTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQ--CGAFDIA---FM 502 (701)
T ss_pred HHHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccc--cccHHHH---HH
Confidence 34556666643 345666777 467654455555568899999999998755432 12221 1223432 22
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-.+|.++| .-.|+.++...++.|+. ..++|++|-..
T Consensus 503 r~IPnm~V~aPsD~~El~~mL~~A~~---~~~gPv~IR~p 539 (701)
T PLN02225 503 SSLPNMIAMAPADEDELVNMVATAAY---VTDRPVCFRFP 539 (701)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCCEEEEec
Confidence 23455543 34588899988888774 24689998653
|
|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
Probab=88.72 E-value=7.1 Score=35.75 Aligned_cols=84 Identities=17% Similarity=0.032 Sum_probs=57.7
Q ss_pred eEEEEeCccc--ccchHHHHHHHHHhhcCCCEEEEEEeCC-c--ccccccc--CccCc-ccHHHHHhhcCceEEEEeCCC
Q 022717 80 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG-W--AISTPIS--DQFRS-DGAVVKGRAYGVRSIRVDGND 151 (293)
Q Consensus 80 ~vv~~~GDGa--~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~--~~~~~~~--~~~~~-~d~~~~a~a~G~~~~~VdG~D 151 (293)
.+++++.||. +.+|.....+.-|...++-++||+.+|. - +|....+ ..... ..+..+...|++|++.|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 7888877778888888887666666554 2 3321110 00111 156678899999998864 38
Q ss_pred HHHHHHHHHHHHH
Q 022717 152 ALAIYSAVHAARE 164 (293)
Q Consensus 152 ~~~v~~a~~~a~~ 164 (293)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888888877664
|
The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function. |
| >PLN02582 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Probab=88.50 E-value=3.7 Score=42.52 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=59.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a~ 140 (293)
++.|.|+|+. .-+++++++ ..|.+=.+.+-++-++..++||+|++...++.. .+++.. ...|+ +-.-
T Consensus 411 vg~AaGLA~~-----G~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~~Di---a~lr 478 (677)
T PLN02582 411 VTFAAGLACE-----GLKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDV---TYMA 478 (677)
T ss_pred HHHHHHHHHC-----CCeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--ccHHH---HHHh
Confidence 4456666552 234555554 456553444456777899999999999776632 222221 22233 2222
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+|.+.| .-.|..++..+++.|++. .++|++|..
T Consensus 479 ~iPnl~V~~Psd~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 479 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 3444443 345888899988888852 358999854
|
|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.4 Score=41.52 Aligned_cols=101 Identities=18% Similarity=0.095 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|++++....+++.. +++. . .+.+++--
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q---~~edia~~ 447 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--Q---PVEQLASL 447 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--c---cHHHHHHH
Confidence 4556666543 2133333322 3554 46677888888899999999988887543 3333 1 23333333
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-.+|.++| .-.|+.++..+++.+++. .++|++|-.
T Consensus 448 r~iP~~~V~~P~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 448 RAIPNLTVIRPADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred HhCCCcEEEeCCCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 34455543 445888999999988851 278998866
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=87.11 E-value=2.7 Score=47.91 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-+.|+|+|.-+-..........| ..|...+++.+--
T Consensus 353 fmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q--~iDq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQ--AINQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCc--ccchhhHHHhhhh
Confidence 3566776654 3455666777888775 445677888889999999876553221111111 1245556666655
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 022717 143 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 178 (293)
Q Consensus 143 ~~~~VdG~D~~~------v~~a~~~a~~~~r~~-~gP~lIe~~ 178 (293)
...+|. ++++ +..++++|+..++.+ .||+.|++-
T Consensus 425 ~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 FFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 556663 3333 346777787777776 499999997
|
|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.96 E-value=5.7 Score=38.02 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=75.5
Q ss_pred CccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc-ccCccCcccHHHHHh
Q 022717 60 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 138 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~-~~~~~~~~d~~~~a~ 138 (293)
+.+++++|++++- .+..-...|.|-. -.+|.|.+|+-..+|+++++.+........ +.. ...|+.. ++
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~-~r 126 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMA-AR 126 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHH-HH
Confidence 3477788888773 3445555566655 367899999999999988888776544322 211 1224432 22
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
.-||+.+... |+.+.+...-.|++.+-+..-|+++-..-++. .|.
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~-~h~ 171 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA-SHE 171 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchh-cCc
Confidence 2278877766 78787777778888877778899988777654 344
|
|
| >KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.88 E-value=4.4 Score=39.55 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc-Cc
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GV 142 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~-G~ 142 (293)
+|-|.|.+. ++..+|++..|-|+++ . -.-|.-|-.-+.|++++- .+..-+.-..+.+...|+..+-+++ -|
T Consensus 144 aAegYaR~s---gKPGvvlvTSGPGATN--v-vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKw 215 (675)
T KOG4166|consen 144 AAEGYARSS---GKPGVVLVTSGPGATN--V-VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKW 215 (675)
T ss_pred hhhhhhhhc---CCCcEEEEecCCCccc--c-cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeecccee
Confidence 355666554 4677899999999997 2 223666666778866542 2321111111222223444444444 34
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 177 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~ 177 (293)
+++. . |++++-+-+.+|++.+-.+ .||+||++
T Consensus 216 NvmV-k--dVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 216 NVMV-K--DVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred heee-e--cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 4443 2 7899999999999877665 68899877
|
|
| >COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.8 Score=34.01 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=67.7
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccC-cccHHHHH
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 137 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a 137 (293)
.-+++++.|+.+|-+ ...+ ++-..+.+. ++..--.+-..+++|++.++..-++-... .+.|.+ ..-+-++-
T Consensus 52 Eeg~GIcAGa~lAGk-----k~ai-lmQnsGlGN-siNal~SL~~ty~iPl~ml~ShRG~~~E~-i~AQVpmGr~~~kiL 123 (172)
T COG4032 52 EEGVGICAGAYLAGK-----KPAI-LMQNSGLGN-SINALASLYVTYKIPLLMLASHRGVLKEG-IEAQVPMGRALPKIL 123 (172)
T ss_pred hcceeeehhhhhcCC-----CcEE-EEeccCcch-HHHHHHHHHHHhccchhhhhhccchhhcC-CccccccchhhHHHH
Confidence 445677889988842 3333 333333321 22222223456889999998887763221 111211 12345778
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 138 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 138 ~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+..++|.++.. .+++-+..+..+...+-+.+.|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 88999999987 477777888888877777888987655
|
|
| >PLN02790 transketolase | Back alignment and domain information |
|---|
Probab=86.63 E-value=5.3 Score=41.26 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCc
Q 022717 94 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRP 172 (293)
Q Consensus 94 ~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP 172 (293)
...+++..++..++||+||+...+.+........ ..+.+++---.+|.+.| .--|..++..+++.|++ ..++|
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~TH---q~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~---~~~gP 504 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTH---QPIEHLASLRAMPNILMLRPADGNETAGAYKVAVT---NRKRP 504 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCc---ccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHH---cCCCC
Confidence 4566788899999999999988887643221111 22444444445555553 44588888888888875 24689
Q ss_pred EEEEEE
Q 022717 173 ILIEAL 178 (293)
Q Consensus 173 ~lIe~~ 178 (293)
+.|-..
T Consensus 505 ~~irl~ 510 (654)
T PLN02790 505 TVLALS 510 (654)
T ss_pred EEEEec
Confidence 888653
|
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=6 Score=40.27 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=59.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
++.|.|+|+. + -+++++.+. .|.+-.+.+-.+-++..++||+|++...++.-.+++.. ...|+ +---.
T Consensus 333 v~~AaGlA~~----G-~~Pvv~~fs--~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Di---a~lr~ 400 (581)
T PRK12315 333 VAFASGIAAN----G-ARPVIFVNS--TFLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDI---PMISN 400 (581)
T ss_pred HHHHHHHHHC----c-CeEEEEeeH--HHHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHH---HHHhc
Confidence 4556666542 2 344444443 35443343445557889999999998766654333322 22333 22224
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+|.+.| --.|+.++..+++.|++ ..++|++|-.
T Consensus 401 iPnl~V~~P~d~~e~~~~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 401 IPNLVYLAPTTKEELIAMLEWALT---QHEHPVAIRV 434 (581)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 455543 44588899999988885 2368999866
|
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=86.34 E-value=5.5 Score=41.25 Aligned_cols=104 Identities=13% Similarity=-0.033 Sum_probs=65.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..++||+||....+++......... .+.+++---.
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq---~iedla~lR~ 484 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQ---PVEQLASLRL 484 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccc---cHHHHHHHhc
Confidence 4556666651 1223444444 36655 67788999999999999999999887643222222 2344443334
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+|.+.| .--|..++..+++.|++. .++|+.|-..
T Consensus 485 iPn~~v~~PaD~~E~~~~~~~al~~---~~gP~~irl~ 519 (663)
T PRK12753 485 TPNFSTWRPCDQVEAAVAWKLAIER---HNGPTALILS 519 (663)
T ss_pred CCCCEEEccCCHHHHHHHHHHHHhc---CCCCEEEEec
Confidence 554443 334788888888888852 4789888664
|
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.98 E-value=3.6 Score=41.92 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 022717 94 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 173 (293)
Q Consensus 94 ~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~ 173 (293)
...-++.+|++.++|++||..-..++.........+.+.++.+=.--++.++|-- |..+...+.+.|+++ .++|+
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt 514 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPT 514 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCe
Confidence 3455799999999999999999998775333222233444443333466677632 556777888888874 58999
Q ss_pred EEEEE
Q 022717 174 LIEAL 178 (293)
Q Consensus 174 lIe~~ 178 (293)
+|...
T Consensus 515 ~Lilt 519 (663)
T COG0021 515 ALILT 519 (663)
T ss_pred EEEEe
Confidence 98664
|
|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=84.39 E-value=7.8 Score=38.82 Aligned_cols=109 Identities=20% Similarity=0.130 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc-c--cccCccCc---ccHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-T--PISDQFRS---DGAV 134 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~-~--~~~~~~~~---~d~~ 134 (293)
..-+|-|.|.+. + ..++++..|=|+++. + -++..|-..+.|+|+|.-.-..... . ........ .++.
T Consensus 51 A~~mAdgyar~t---g-~gv~~~t~GPG~~n~--~-~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~ 123 (539)
T TIGR03393 51 AAYAADGYARCK---G-AAALLTTFGVGELSA--I-NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFY 123 (539)
T ss_pred HHHHhhhhhhhc---C-ceEEEEecCccHHHH--h-hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHH
Confidence 344566666554 3 245666779998862 2 3466788889999999854332100 0 00000001 1223
Q ss_pred HHHhhcCceEEEEeCCC-HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 135 VKGRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 135 ~~a~a~G~~~~~VdG~D-~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
+.++..-.....++-.+ +..+.++++.|+. ..+|++|++-..
T Consensus 124 ~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~D 166 (539)
T TIGR03393 124 RMAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPVD 166 (539)
T ss_pred HHhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEeccc
Confidence 33443322233343334 5666666666664 578999999764
|
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=83.80 E-value=13 Score=35.00 Aligned_cols=104 Identities=19% Similarity=0.115 Sum_probs=55.2
Q ss_pred CccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCcc
Q 022717 60 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 131 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~ 131 (293)
..++.|+|+|++ ..++++++.. ..|.+=.+.+-.+-++.. ++|+++...+..++...++..+
T Consensus 62 ~~vg~AaGlA~~-----G~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~---- 131 (327)
T PRK09212 62 GFAGLAVGAAFA-----GLRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQ---- 131 (327)
T ss_pred HHHHHHHHHHHc-----CCeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCccccc----
Confidence 345566676653 2344545443 122221233333444554 4678877665444443333222
Q ss_pred cHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 132 GAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 132 d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.+..+.+ .+|.++| .-.|+.++..+++.|++ .++|++|-..-
T Consensus 132 ~~ea~~r--~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~ 174 (327)
T PRK09212 132 CYAAWYS--HIPGLKVVAPYFAADCKGLLKTAIR----DPNPVIFLENE 174 (327)
T ss_pred CHHHHHh--cCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEEEch
Confidence 2323333 3455543 44588999999988885 47899985443
|
|
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.59 E-value=13 Score=35.55 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEE-eCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCcc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 131 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~-~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~ 131 (293)
.++.|.|+|++ + .++++++ +. .|.+-.+.+-.+-++.+ ++|++++.....++..+++..+
T Consensus 94 ~vg~AaGlA~~----G-~~Pvv~~~fa--~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~---- 162 (355)
T PTZ00182 94 FAGFAIGAAMN----G-LRPIAEFMFA--DFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ---- 162 (355)
T ss_pred HHHHHHHHHhC----C-CEEEEEechh--hHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc----
Confidence 35556666653 2 2334433 33 33333344434445553 5677766544445444444322
Q ss_pred cHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 132 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 132 d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.+..+.+.+ |+.++. -.|+.++..+++.+++ .++|++|-
T Consensus 163 ~~ea~lr~iPn~~V~~--Psd~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 163 SFEAYFAHVPGLKVVA--PSDPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred hHHHHHhcCCCCEEEe--eCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 222333333 444443 3488899998888886 47899773
|
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.75 E-value=9.4 Score=39.54 Aligned_cols=104 Identities=11% Similarity=-0.027 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.++|.|+|+- +.-.+.++.+ ..|.+ -..+.+.+++..++||++|....+++....-.... .+.+++---.
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq---~iEdla~lR~ 484 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQ---PVEQVASLRV 484 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcc---cHHHHHHHhc
Confidence 3556666652 1123333333 25654 67788999999999999999998887643222222 3444444444
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+|.+.| .--|..++..+++.+++. .++|+.|-..
T Consensus 485 iPn~~V~~PaD~~E~~~~~~~a~~~---~~gP~yirl~ 519 (663)
T PRK12754 485 TPNMSTWRPCDQVESAVAWKYGVER---QDGPTALILS 519 (663)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhC---CCCCEEEEeC
Confidence 555553 445888888888888862 3689977553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 293 | ||||
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 2e-84 | ||
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 2e-83 | ||
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-83 | ||
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-83 | ||
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 3e-83 | ||
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 4e-83 | ||
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 4e-83 | ||
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 4e-83 | ||
| 2bfe_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 5e-83 | ||
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 3e-82 | ||
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 4e-82 | ||
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 5e-82 | ||
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 7e-82 | ||
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 7e-82 | ||
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 2e-81 | ||
| 1v1m_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 5e-81 | ||
| 1um9_A | 367 | Branched-chain 2-oxo Acid Dehydrogenase (e1) From T | 3e-55 | ||
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 8e-47 | ||
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 9e-47 | ||
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 3e-46 | ||
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 4e-46 | ||
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 8e-42 | ||
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 1e-40 | ||
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 7e-26 | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-25 | ||
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 1e-25 | ||
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-25 | ||
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 2e-25 | ||
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 6e-24 |
| >pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
|
| >pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
|
| >pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
|
| >pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 | Back alignment and structure |
|
| >pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
|
| >pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
|
| >pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 | Back alignment and structure |
|
| >pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 | Back alignment and structure |
|
| >pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
|
| >pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
|
| >pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
|
| >pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Score = 437 bits (1125), Expect = e-155
Identities = 135/283 (47%), Positives = 193/283 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 114 REAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVG 173
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 174 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 233
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +T
Sbjct: 234 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHAST 293
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE
Sbjct: 294 SDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 353
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 290
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP +
Sbjct: 354 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 396
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-149
Identities = 115/277 (41%), Positives = 162/277 (58%), Gaps = 1/277 (0%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
R+ G+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P
Sbjct: 92 FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 151
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A GAA ++K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS
Sbjct: 152 PAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVD 211
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
Q S K A+G+ VDG D LA Y V A E A P L+E YR G
Sbjct: 212 YRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYG 271
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H+++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L
Sbjct: 272 PHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGL 330
Query: 244 QEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280
+EAE+A P +F DV+ P +L QE L+E +
Sbjct: 331 KEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-140
Identities = 103/276 (37%), Positives = 143/276 (51%), Gaps = 8/276 (2%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
R+ +L+ R S+ E Q N+ D KGRQ+PI Y + +FT+S +ATQ AVG
Sbjct: 133 RQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVG 192
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
A A + A + GDG T+E DFH AL F+ V APVI NN WAIST +
Sbjct: 193 WAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIA 252
Query: 128 -FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186
S +G G+ S+RVDGND +A+Y+A A E A P LIE +TYR G H+
Sbjct: 253 GGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHS 312
Query: 187 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
TSDD +KYRP D+ + DP+ R ++ + G W+ + + ++ A +EA
Sbjct: 313 TSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEA 371
Query: 247 EKAEK------PPISDLFTDVYDVSPSNLREQEHSL 276
E+ P + +F DVY P +LR Q L
Sbjct: 372 EQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-138
Identities = 103/276 (37%), Positives = 152/276 (55%), Gaps = 11/276 (3%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
R+ ++W G + Q F + G Q+P N I Q A G
Sbjct: 103 RDVPQIIWHGLPL----YQAFLFSRGHFHGNQIPEG-----VNVLPPQIIIGAQYIQAAG 153
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
A LKM K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +AISTP+ Q
Sbjct: 154 VALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQ 213
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+ K A G+ I+VDG D LA+Y+AV AARE AI P LIE L +R G HT
Sbjct: 214 TVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTM 273
Query: 188 S-DDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
S DD T+YR + W +DP+ RFRK++E+ G W+ + E+ + +++I A+++A
Sbjct: 274 SGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKA 332
Query: 247 EKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKK 282
++ K ++DL + +++ P NL+EQ +E K
Sbjct: 333 DETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 368
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 1e-67
Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 8/260 (3%)
Query: 5 SSLREPGVLLWRGFSMQEFANQCFGNKADY--GKGRQMPIHYGSNKHNYFTVSSTIATQL 62
++ R G RG S++E + G K GKG M H + N++ + + Q+
Sbjct: 91 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSM--HMYA--KNFYGGNGIVGAQV 146
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 206
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
+ + R + +RVDG D L + A A PIL+E TYR
Sbjct: 207 SVERA--AASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRY 264
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
H SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 265 HGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA 324
Query: 243 LQEAEKAEKPPISDLFTDVY 262
Q A +PP+ +L +Y
Sbjct: 325 AQFATADPEPPLEELGYHIY 344
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 18/125 (14%)
Query: 62 LPHAVGAAYALK-MDRKDACAVTY--FGDGGTSEGDFHAALNFSAVTEA--PVIFICRNN 116
L A G AY K D+ Y GDG SEG A+ F A ++ I N
Sbjct: 127 LGAACGMAYTGKYFDKASYR--VYCLLGDGELSEGSVWEAMAF-ASIYKLDNLVAILDIN 183
Query: 117 GWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 174
S P Q + D + + R A+G +I VDG+ + A A+ +P
Sbjct: 184 RLGQSDPAPLQHQMD--IYQKRCEAFGWHAIIVDGHSVEELCKAFGQAK------HQPTA 235
Query: 175 IEALT 179
I A T
Sbjct: 236 IIAKT 240
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 5e-07
Identities = 29/127 (22%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEG----DFHAALNFSAVTEAPVIFICRNNG 117
L HA GA M+ GDG G + + + T+ V+ I NG
Sbjct: 181 LSHAYGAV----MNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236
Query: 118 WAISTPISDQFRSDGAVV-KGRAYGVRSIRV----DGNDALAIYSAVHAAREMAIGEGRP 172
+ I+ P SD + R G D D ++I+ E E
Sbjct: 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICD 296
Query: 173 ILIEALT 179
I A T
Sbjct: 297 IKAAAQT 303
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 115 NNGWAISTPISDQFRSDGAVVKGR--AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 172
+N +I + F + VK R A G + ++G+D I A+ A++ +P
Sbjct: 181 SNNISIEGDVGLAFNEN---VKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKP 233
Query: 173 ILIEALT 179
LI A T
Sbjct: 234 CLIIAKT 240
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 293 | |||
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxid | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; hete | 100.0 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; | 100.0 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 componen | 100.0 | |
| 2yic_A | 868 | 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavopr | 100.0 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 99.97 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 99.97 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 99.97 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 99.96 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 99.96 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 99.96 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 99.95 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 99.95 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 99.95 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 99.95 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 99.95 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 99.94 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 99.93 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 99.92 | |
| 2qtc_A | 886 | Pyruvate dehydrogenase E1 component; thiamin dipho | 99.92 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 99.74 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 99.72 | |
| 3ahc_A | 845 | Phosphoketolase, xylulose 5-phosphate/fructose 6-p | 99.72 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 99.71 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 99.71 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 99.7 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 99.7 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 99.7 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 99.7 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 99.7 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 99.69 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 99.69 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 99.68 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 99.68 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 99.68 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 99.67 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 99.66 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 99.65 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 99.64 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 99.6 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.6 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 99.54 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 99.08 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 95.48 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 95.48 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 95.39 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 95.25 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 95.0 | |
| 2vbi_A | 566 | Pyruvate decarboxylase; thiamine pyrophosphate, ly | 94.93 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 94.9 | |
| 2wvg_A | 568 | PDC, pyruvate decarboxylase; thiamine diphosphate, | 94.87 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 94.82 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 94.57 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophos | 94.39 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 94.37 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 94.31 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 94.11 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 94.08 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alph | 93.25 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 93.12 | |
| 3mos_A | 616 | Transketolase, TK; thiamin diphosphate TPP THDP en | 92.78 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia | 92.7 | |
| 2vk8_A | 563 | Pyruvate decarboxylase isozyme 1; asymmetric activ | 92.54 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calc | 92.47 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, nation | 92.37 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, | 92.35 | |
| 1q6z_A | 528 | BFD, BFDC, benzoylformate decarboxylase; lyase, ca | 92.33 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine py | 92.32 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heter | 92.32 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 91.97 | |
| 2vbf_A | 570 | Branched-chain alpha-ketoacid decarboxylase; KDCA, | 91.67 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: | 91.45 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, | 91.2 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center fo | 90.7 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta typ | 90.26 | |
| 3uk1_A | 711 | Transketolase; structural genomics, seattle struct | 89.35 | |
| 1ovm_A | 552 | Indole-3-pyruvate decarboxylase; thiamine diphosph | 88.95 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, t | 88.86 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subun | 87.94 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o | 87.39 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 86.0 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxido | 85.56 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; al | 85.02 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; | 84.76 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 84.16 | |
| 3rim_A | 700 | Transketolase, TK; TPP, transferase; HET: TPP; 2.4 | 83.02 |
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=496.69 Aligned_cols=291 Identities=46% Similarity=0.899 Sum_probs=259.7
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
+|+++||+|++++++|+++.++|++|+|+.+++++|+++++|+..+..+++..+|+||+++|+|+|+|+|.++.+++++|
T Consensus 108 ~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~v 187 (400)
T 2bfd_A 108 LVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVV 187 (400)
T ss_dssp EEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCE
T ss_pred EEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhhCCCCeE
Confidence 68899999999999999999999999999999889999999999888888888999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.+||+||+|++++||+||||+||+|+++++...+.+..++++++++|||++++|||+|+++|++++++
T Consensus 188 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 267 (400)
T 2bfd_A 188 ICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKE 267 (400)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHH
T ss_pred EEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||++|||.+|||++|+|..||+++|++.|+...|||.+++++|++.|+||++++++|+++++++|++
T Consensus 268 A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 347 (400)
T 2bfd_A 268 ARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVME 347 (400)
T ss_dssp HHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985458999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 292 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 292 (293)
++++|++.|.|+++++|++||++.++.+.+|++++.+.+.++|++|+++.+
T Consensus 348 a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~ 398 (400)
T 2bfd_A 348 AFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 398 (400)
T ss_dssp HHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHhCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCcCCcccc
Confidence 999999999999999999999999999999999999999999999987654
|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-66 Score=492.11 Aligned_cols=273 Identities=37% Similarity=0.579 Sum_probs=261.6
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
+++++||+|+++|++|+++.++|++|+|+..+.++|+++++|+.....++++.+|+||+++|+|+|+|+|.|+++++++|
T Consensus 127 ~v~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~v 206 (407)
T 1qs0_A 127 MCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIA 206 (407)
T ss_dssp EEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEE
Confidence 67899999999999999999999999999988889999999998877889999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCcc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 160 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~ 160 (293)
||++|||++++|.++|+||+|++|+||+||||+||+|+++++....+ ...+++++|++||+++++|||+|+++|+++++
T Consensus 207 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~ 286 (407)
T 1qs0_A 207 SAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASR 286 (407)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHH
T ss_pred EEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876655 46799999999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
+|++++|++++|+|||++|||.+|||++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|+
T Consensus 287 ~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 365 (407)
T 1qs0_A 287 WAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVI 365 (407)
T ss_dssp HHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHh------CCCCCcccccccccCCCCccHHHHHHH
Q 022717 241 HALQEAEK------AEKPPISDLFTDVYDVSPSNLREQEHS 275 (293)
Q Consensus 241 ~a~~~a~~------~~~p~~~~~~~~v~~~~~~~~~~~~~~ 275 (293)
+++++|++ +|.|+++++|+|||+++|+++++|+++
T Consensus 366 ~a~~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~~q~~~ 406 (407)
T 1qs0_A 366 AAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQE 406 (407)
T ss_dssp HHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHT
T ss_pred HHHHHHHhcccccCCCCCCHHHHHhhccCCCCHHHHHHHHh
Confidence 99999998 579999999999999999999999875
|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-64 Score=473.73 Aligned_cols=269 Identities=37% Similarity=0.610 Sum_probs=248.7
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
+++++||+|++++++|.++..+|++++|+.+ |+ ++| ...++.+.+|+||+++|+|+|+|+|.++.+++++|
T Consensus 97 ~v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~v 167 (368)
T 1w85_A 97 FILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVA 167 (368)
T ss_dssp EEECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCE
T ss_pred EEEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeE
Confidence 5889999999999999999999999999864 33 345 34677888999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
||++|||++++|.++|+||+|++++||+||||+||+|+++++.....+.++++++|++||+++++|||+|+++|+.++++
T Consensus 168 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 247 (368)
T 1w85_A 168 ITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKA 247 (368)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHH
T ss_pred EEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCC-CCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs-~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
|++++|++++|+|||++|||.+||| ++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|+
T Consensus 248 A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 326 (368)
T 1w85_A 248 ARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 326 (368)
T ss_dssp HHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHH
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 280 (293)
+++++|+++|.|+++++|+|||+++|+.+++|++++.+.+
T Consensus 327 ~a~~~a~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~ 366 (368)
T 1w85_A 327 EAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKE 366 (368)
T ss_dssp HHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHhhccCCCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997764
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-63 Score=470.53 Aligned_cols=277 Identities=42% Similarity=0.670 Sum_probs=265.6
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
+|+++||+|++++.+|+++.++|++|+|+.++++.|+++++|+..+..+++..+|++|+++|.|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 57899999999999999999999999999999989999999998877888889999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
||++|||++++|.++|+|++|+.+++|+||||+||+|+++++.....+..++.+++++||+++++|||+|+.+|++++++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876666678999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|+++++++++|+|||++|||..|||++|+|+.||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 589999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHH
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 279 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~ 279 (293)
++++|+++|.|+++++|+|||+++|+.+++|++++.+.
T Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~ 366 (367)
T 1umd_A 329 GLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 366 (367)
T ss_dssp HHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHhhhcCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999999998764
|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-63 Score=469.99 Aligned_cols=262 Identities=29% Similarity=0.461 Sum_probs=247.0
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
+++++||+|++++++|+++.++|++|+|+.+++++|+++++|+.+ .++++.+|+||+++|+|+|+|+|.++++++++|
T Consensus 88 ~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~v 165 (365)
T 2ozl_A 88 HLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVC 165 (365)
T ss_dssp EEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCE
T ss_pred EEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceE
Confidence 689999999999999999999999999999998888888899854 477888899999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
||++|||++++|.++|+||+|++|+||+||||+||+|+++++.......+++++ ++||+++++|||+|+++|++++++
T Consensus 166 v~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~ 243 (365)
T 2ozl_A 166 LTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRF 243 (365)
T ss_dssp EEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766656677876 689999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||++|||.+|||++|++..||+++|++.|++.+|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 244 A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 323 (365)
T 2ozl_A 244 AAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIED 323 (365)
T ss_dssp HHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888999999999975579999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCc
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPS 267 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~ 267 (293)
++++|+++|.|+++++|+|||++.|+
T Consensus 324 a~~~a~~~p~p~~~~~~~~vy~~~~~ 349 (365)
T 2ozl_A 324 AAQFATADPEPPLEELGYHIYSSDPP 349 (365)
T ss_dssp HHHHHHHSCCCCGGGTTCSSSSSCCC
T ss_pred HHHHHHhCCCCCHHHHHhhhcCCCCh
Confidence 99999999999999999999997665
|
| >2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-53 Score=434.79 Aligned_cols=289 Identities=15% Similarity=0.142 Sum_probs=235.8
Q ss_pred Eeec-CCCchHHHHH--cCCCHHHHHHHhhcCCCCC-CC-CCCCccccCCCC------------CCcccccccccCccHH
Q 022717 2 TTLS-SLREPGVLLW--RGFSMQEFANQCFGNKADY-GK-GRQMPIHYGSNK------------HNYFTVSSTIATQLPH 64 (293)
Q Consensus 2 ~~~~-~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~-~~-G~~~~~h~~~~~------------~~~~~~~g~lG~~lp~ 64 (293)
++++ +||||+++|+ +|+++.++|+||+|+.+++ ++ |+++++|++... .++.+++|+||+++|+
T Consensus 174 ~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~ 253 (868)
T 2yic_A 174 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPV 253 (868)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHH
T ss_pred EEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccH
Confidence 4665 8999999999 9999999999999998876 43 455788987532 2344568999999999
Q ss_pred HHHHHHHhhhcC----------CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCc
Q 022717 65 AVGAAYALKMDR----------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRS 130 (293)
Q Consensus 65 A~G~A~a~k~~~----------~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~ 130 (293)
|+|+|+|.|+.+ .+.+++|++|||++ +||.+||+||+|+.|+|| +||||+||+|+++++.....+.
T Consensus 254 A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~ 333 (868)
T 2yic_A 254 LEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSS 333 (868)
T ss_dssp HHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSS
T ss_pred HHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccc
Confidence 999999999864 56899999999996 899999999999999998 9999999999999976544455
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcH
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPV 210 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi 210 (293)
.++.+++++|||++++|||+|+++|+.++++|++++|++++|+|||++|||.+|||++|+|+.|| +++++.|++.+||+
T Consensus 334 ~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~-p~~~~~~~~~~dPi 412 (868)
T 2yic_A 334 EYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQ-PYMYDVIDTKRGSR 412 (868)
T ss_dssp SSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTC-HHHHHHHTTCCCHH
T ss_pred cCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCC-hHHHHHHHhCCCHH
Confidence 67888999999999999999999999999999999999999999999999999999999986555 55677777678999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-C-CC-CcccccccccCC----CCccHHHHHHHHHHHHHhC
Q 022717 211 TRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKH 283 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~-~-~p-~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~ 283 (293)
.+|+++|+++|++|++++++++++++++|++++++|++. | .| +. .++.++|.. .+....+.++.+.+.+...
T Consensus 413 ~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~ 491 (868)
T 2yic_A 413 KAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLAL 491 (868)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999873 2 22 22 334455642 3445677888888888999
Q ss_pred CCCCCCCCC
Q 022717 284 PQDYPSNVP 292 (293)
Q Consensus 284 p~~~~~~~~ 292 (293)
|++|.+|.-
T Consensus 492 p~~~~~~~~ 500 (868)
T 2yic_A 492 PEGFTVHPR 500 (868)
T ss_dssp CTTCCCCTT
T ss_pred Ccccccchh
Confidence 999998764
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=438.11 Aligned_cols=289 Identities=15% Similarity=0.152 Sum_probs=235.5
Q ss_pred Eeec-CCCchHHHHH--cCCCHHHHHHHhhcCCCCC-CC-CCCCccccCCCC------------CCcccccccccCccHH
Q 022717 2 TTLS-SLREPGVLLW--RGFSMQEFANQCFGNKADY-GK-GRQMPIHYGSNK------------HNYFTVSSTIATQLPH 64 (293)
Q Consensus 2 ~~~~-~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~-~~-G~~~~~h~~~~~------------~~~~~~~g~lG~~lp~ 64 (293)
++++ +||||+++|+ +|+++.++|+||+|+.+++ ++ |+++++|++... .++.+++|+||+++|+
T Consensus 419 ~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~ 498 (1113)
T 2xt6_A 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPV 498 (1113)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHH
T ss_pred EEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccH
Confidence 4565 8999999999 9999999999999998876 43 455788987532 2344568999999999
Q ss_pred HHHHHHHhhhcC----------CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCc
Q 022717 65 AVGAAYALKMDR----------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRS 130 (293)
Q Consensus 65 A~G~A~a~k~~~----------~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~ 130 (293)
|+|+|+|.|+.+ .+.+++|++|||++ +||.+||+||+|+.++|| +||||+||+|+++++.....+.
T Consensus 499 A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~ 578 (1113)
T 2xt6_A 499 LEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSS 578 (1113)
T ss_dssp HHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSS
T ss_pred HHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccc
Confidence 999999999865 57899999999996 899999999999999998 9999999999999976544445
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcH
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPV 210 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi 210 (293)
.++.+++++|||++++|||+|+++|+.++++|++++|++++|+|||++|||.+|||++|+|+.||+ +|++.|++.+||+
T Consensus 579 ~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~-~~~~~~~~~~dpi 657 (1113)
T 2xt6_A 579 EYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQP-YMYDVIDTKRGSR 657 (1113)
T ss_dssp SSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCH-HHHHHHTTCCCHH
T ss_pred cCHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCCh-HHHHHHHhcCCHH
Confidence 567889999999999999999999999999999999999999999999999999999999865554 5667776678999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-C-CC-CcccccccccCC----CCccHHHHHHHHHHHHHhC
Q 022717 211 TRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKH 283 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~-~-~p-~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~ 283 (293)
.+|+++|+++|++|++++++|+++++++|++++++|++. | .| +. ..+.++|.. .+....+.++.+.+.+...
T Consensus 658 ~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~ 736 (1113)
T 2xt6_A 658 KAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLAL 736 (1113)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999884 2 22 22 334556642 3445678888999999999
Q ss_pred CCCCCCCCC
Q 022717 284 PQDYPSNVP 292 (293)
Q Consensus 284 p~~~~~~~~ 292 (293)
|++|.+|..
T Consensus 737 p~~~~~~~~ 745 (1113)
T 2xt6_A 737 PEGFTVHPR 745 (1113)
T ss_dssp CTTCCCCTT
T ss_pred Ccccccchh
Confidence 999998864
|
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-51 Score=423.16 Aligned_cols=289 Identities=15% Similarity=0.101 Sum_probs=227.0
Q ss_pred Eee-cCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC----------CcccccccccCccHHHHHH
Q 022717 2 TTL-SSLREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH----------NYFTVSSTIATQLPHAVGA 68 (293)
Q Consensus 2 ~~~-~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~----------~~~~~~g~lG~~lp~A~G~ 68 (293)
+++ ++||||+++|+ +|+++.++|+||+|+.++.+.|+++++|++.... ++...++++|+++|+|+|+
T Consensus 254 ~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~ 333 (933)
T 2jgd_A 254 VVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGS 333 (933)
T ss_dssp EEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHH
Confidence 466 58999999999 9999999999999998887666778899876432 2345679999999999999
Q ss_pred HHHhhhcC-----CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccc-cccCccCcccHHHHHh
Q 022717 69 AYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRSDGAVVKGR 138 (293)
Q Consensus 69 A~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~-~~~~~~~~~d~~~~a~ 138 (293)
|+|.++++ .+.++||++|||++ ++|+++|+||+|+.+++| +||||+||+|+|++ +...+....+++++++
T Consensus 334 A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~ 413 (933)
T 2jgd_A 334 VRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGK 413 (933)
T ss_dssp HHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGG
T ss_pred HHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHH
Confidence 99999874 67899999999998 999999999999999999 99999999999999 8877666678899999
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHH
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIE 218 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~ 218 (293)
+||+++++|||+|+++|++++++|++++|++++|+|||+.|||.+||+++|+| .||+++|++.|++.+||+.+|+++|+
T Consensus 414 a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~-~yr~~~e~~~~~~~~dPi~~~~~~Li 492 (933)
T 2jgd_A 414 MVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEP-SATQPLMYQKIKKHPTPRKIYADKLE 492 (933)
T ss_dssp TTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHHHHHHHHH
T ss_pred HcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccch-hhCCHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986 59999999999855799999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccccccc------CCCCccHHHHHHHHHHHHHhCCCCCCCCC
Q 022717 219 SNGWWNGDIESELRSSVRKQILHALQEAEKA-EKPPISDLFTDVY------DVSPSNLREQEHSLRETIKKHPQDYPSNV 291 (293)
Q Consensus 219 ~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~-~~p~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 291 (293)
++|++|++++++++++++++|+++++.|++. |.|.....+..+. ...+....+.++.+.+.+...|++|.+|.
T Consensus 493 ~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~ 572 (933)
T 2jgd_A 493 QEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQS 572 (933)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccH
Confidence 9999999999999999999999999998873 3321112232221 12334456677888888888999998763
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=260.99 Aligned_cols=189 Identities=21% Similarity=0.229 Sum_probs=155.7
Q ss_pred hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC----------C
Q 022717 10 PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------K 77 (293)
Q Consensus 10 ~~~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~ 77 (293)
.+++...|. +.++ +..++. .|+-++.|+.....++...+|++|+++|.|+|+|+|.++.+ .
T Consensus 75 Ya~~~l~G~~~~~~~-l~~~r~------~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~ 147 (680)
T 1gpu_A 75 YSMLHLTGYDLSIED-LKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLS 147 (680)
T ss_dssp HHHHHHTTCSCCHHH-HTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCC
T ss_pred HHHHHHhCCCCCHHH-HHhhcc------cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCC
Confidence 445555665 4443 344432 24445778877445566778999999999999999998654 3
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EEeCC-CHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGN-DALA 154 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~VdG~-D~~~ 154 (293)
+++|+|++|||++++|+++|+|++|+.++|| +|+||+||+|++++++.... ..++.+++++|||+++ +|||| |+++
T Consensus 148 ~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~ 226 (680)
T 1gpu_A 148 DNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAG 226 (680)
T ss_dssp CCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHH
Confidence 7899999999999999999999999999997 99999999999998876554 5799999999999999 99999 9999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC---CCCCChHHHHHHHhCCCcH
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS---TKYRPVDEIEWWRTTQDPV 210 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~---~~Yr~~~e~~~~~~~~dPi 210 (293)
+++++++|.+ ..++|+||+++|+|.+||+..|++ ..||+++|++.|++ ++++
T Consensus 227 l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 227 IAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp HHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 9999999875 258899999999999999977653 57999999999973 4444
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=264.01 Aligned_cols=192 Identities=22% Similarity=0.212 Sum_probs=154.9
Q ss_pred CCCc---hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcC---
Q 022717 6 SLRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDR--- 76 (293)
Q Consensus 6 ~yR~---~~~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~~--- 76 (293)
.|-+ .+++...|. +.++ +..++. .|+..+.|+.... .++...+|+||+++|.|+|+|+|.++.+
T Consensus 69 GH~~~~lYa~l~l~G~~~~~~~-l~~~r~------~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~ 141 (651)
T 2e6k_A 69 GHGSMLLYAVLHLTGYDLPLEE-LKSFRQ------WGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEF 141 (651)
T ss_dssp GGGHHHHHHHHHHTTCSCCHHH-HTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhCCCCCHHH-HHHhhc------cCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccc
Confidence 3555 444555665 3443 444432 2343466776543 3455678999999999999999998754
Q ss_pred -------CCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EE
Q 022717 77 -------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RV 147 (293)
Q Consensus 77 -------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~V 147 (293)
.+++|+|++|||++++|+++|+|++|+.++|| +|+||+||+|++++++...+ ..|+.+++++|||+++ +|
T Consensus 142 ~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~v 220 (651)
T 2e6k_A 142 NRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGWQTLRVE 220 (651)
T ss_dssp CBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTCEEEEES
T ss_pred cccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCCeEEEEe
Confidence 68899999999999999999999999999997 99999999999998877665 6799999999999999 99
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC----CChHHHHHHHhCCCcHH
Q 022717 148 DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY----RPVDEIEWWRTTQDPVT 211 (293)
Q Consensus 148 dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Y----r~~~e~~~~~~~~dPi~ 211 (293)
||||++++++++++|.+ .++|+||+++|+|.+||+ .+++..| ++++|++.|+ +++|+.
T Consensus 221 dG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~-~~~~~~ 282 (651)
T 2e6k_A 221 DVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATR-RNLGWP 282 (651)
T ss_dssp CTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHH-HHHTCC
T ss_pred CCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccc-ccccccccccCCCHHHHHHHH-HHcCCC
Confidence 99999999999998875 689999999999999999 5555555 4678899997 467663
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=251.92 Aligned_cols=183 Identities=21% Similarity=0.221 Sum_probs=150.2
Q ss_pred HHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCC-cccccccccCccHHHHHHHHHhhhcC----------CC
Q 022717 12 VLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKMDR----------KD 78 (293)
Q Consensus 12 ~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~-~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~ 78 (293)
++...|. +.+++ ..++. .|+..++|+.....+ +...+|+||+++|.|+|+|+|.++.+ .+
T Consensus 76 ~l~l~G~~~~~~~l-~~~r~------~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d 148 (673)
T 1r9j_A 76 LLHMAGYNLTMDDL-KGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVD 148 (673)
T ss_dssp HHHHHTCSCCHHHH-HTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCC
T ss_pred HHHHcCCCCCHHHH-Hhhcc------CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCC
Confidence 4444565 34444 44532 355667888765444 44568999999999999999998754 58
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EEeC-CCHHHH
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDG-NDALAI 155 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~VdG-~D~~~v 155 (293)
++|+|++|||++++|+++|++++|+.++|| +|+||+||+|++++++.... ..|+.+++++|||+++ +||| ||++++
T Consensus 149 ~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l 227 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGL 227 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHH
T ss_pred CEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHH
Confidence 899999999999999999999999999997 99999999999998887666 6799999999999999 8999 999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC---CCCCChHHHHHHHh
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS---TKYRPVDEIEWWRT 205 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~---~~Yr~~~e~~~~~~ 205 (293)
++++++|.+ ..++|++|+++|+|.+||+..|.. ..+++++|++.|++
T Consensus 228 ~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~ 277 (673)
T 1r9j_A 228 RKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKA 277 (673)
T ss_dssp HHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccCCCCHHHHHHHHH
Confidence 999998875 368999999999999999854432 34677888888863
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=250.69 Aligned_cols=175 Identities=21% Similarity=0.203 Sum_probs=144.5
Q ss_pred cCCCc---hHHHHHcC--CCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhc---
Q 022717 5 SSLRE---PGVLLWRG--FSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMD--- 75 (293)
Q Consensus 5 ~~yR~---~~~~l~~G--~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~--- 75 (293)
..|-+ .+++...| ++.++ +..|+. .|+.++.|+.....+.+ ..+|++|+++|.|+|+|+|.|+.
T Consensus 83 ~GH~s~~lYa~l~l~G~~~~~~~-l~~fr~------~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~ 155 (700)
T 3rim_A 83 AGHSSLTLYIQLYLGGFGLELSD-IESLRT------WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGL 155 (700)
T ss_dssp STTCHHHHHHHHHHTTSSCCHHH-HTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHhCCCCCHHH-HHHhhc------CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhh
Confidence 35666 33455566 45555 444532 35657888876544444 45899999999999999999974
Q ss_pred ----------CCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceE
Q 022717 76 ----------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 144 (293)
Q Consensus 76 ----------~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 144 (293)
+.+++|+|++|||++++|++||++++|+.++|| +|+||+||+|+|++++.... ..++.+++++|||++
T Consensus 156 ~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~ 234 (700)
T 3rim_A 156 FDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHV 234 (700)
T ss_dssp HCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEE
T ss_pred ccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeE
Confidence 568899999999999999999999999999996 99999999999998887654 679999999999999
Q ss_pred EEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 022717 145 IRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 190 (293)
Q Consensus 145 ~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd 190 (293)
++| ||||+++|++++++|.+ ..++|+||+++|+|.+||+...+
T Consensus 235 ~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~ 278 (700)
T 3rim_A 235 QEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMD 278 (700)
T ss_dssp EEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTT
T ss_pred EEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCC
Confidence 999 99999999999998865 36899999999999999986543
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=244.87 Aligned_cols=168 Identities=23% Similarity=0.240 Sum_probs=137.8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCC-CceEEEEeCccc
Q 022717 12 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGG 89 (293)
Q Consensus 12 ~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDGa 89 (293)
++...|.-+.+-+..++. .|+++++|+.... +.+ ..+|++|+++|+|+|+|+|.++.+. +++|+|++|||+
T Consensus 83 ~~~l~G~~~~~~l~~~r~------~~s~l~ghp~~~~-~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~ 155 (616)
T 3mos_A 83 VWAEAGFLAEAELLNLRK------ISSDLDGHPVPKQ-AFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGE 155 (616)
T ss_dssp HHHHTTSSCGGGGGGTTC------TTCSCCSSCCTTS-TTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGG
T ss_pred HHHHcCCCCHHHHHHhcc------CCCCCCCCCCCCC-CcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 444567522223444431 3667888887543 333 3579999999999999999986554 689999999999
Q ss_pred ccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhc
Q 022717 90 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIG 168 (293)
Q Consensus 90 ~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~ 168 (293)
+++|+++|+|++|+.++|| +|+|++||+|++++++.......++.+++++|||++++|||||++++.++++++
T Consensus 156 ~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------ 229 (616)
T 3mos_A 156 LSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------ 229 (616)
T ss_dssp GGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------
T ss_pred cccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------
Confidence 9999999999999999997 889999999999988776666678999999999999999999999999988543
Q ss_pred cCCcEEEEEEeecCCCCCCCCCCC
Q 022717 169 EGRPILIEALTYRVGHHTTSDDST 192 (293)
Q Consensus 169 ~~gP~lIe~~t~R~~gHs~~Dd~~ 192 (293)
.++|+||+++|+|.+||+..+++.
T Consensus 230 ~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 230 KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred CCCCEEEEEEEecccccccccCch
Confidence 479999999999999998776554
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=244.27 Aligned_cols=165 Identities=25% Similarity=0.273 Sum_probs=141.9
Q ss_pred CCCCccccCCCCC-CcccccccccCccHHHHHHHHHhhhcC----------CCceEEEEeCcccccchHHHHHHHHHhhc
Q 022717 37 GRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVT 105 (293)
Q Consensus 37 G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~ 105 (293)
|+-.+.|+..... ++...+|+||+++|.|+|+|+|.++.+ .+++|+|++|||++++|+++|+|++|+.+
T Consensus 94 ~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~ 173 (669)
T 2r8o_A 94 HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTL 173 (669)
T ss_dssp TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHc
Confidence 4444678765443 455568999999999999999998653 37899999999999999999999999999
Q ss_pred CCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 106 EAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 106 ~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+|| +|+||+||+|++++++.... ..++.+++++|||+++ +|||||++++++++++|.+ ..++|+||+++|+|..
T Consensus 174 ~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~ 249 (669)
T 2r8o_A 174 KLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGF 249 (669)
T ss_dssp TCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTT
T ss_pred CCCcEEEEEECCCcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEecc
Confidence 997 99999999999998876554 5799999999999999 9999999999999999875 2588999999999999
Q ss_pred CCCC-CCCC---CCCCChHHHHHHHh
Q 022717 184 HHTT-SDDS---TKYRPVDEIEWWRT 205 (293)
Q Consensus 184 gHs~-~Dd~---~~Yr~~~e~~~~~~ 205 (293)
||+. .+++ ..|++++|++.|++
T Consensus 250 G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 250 GSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp TCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 9994 4443 57999999998873
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=240.44 Aligned_cols=164 Identities=22% Similarity=0.199 Sum_probs=139.3
Q ss_pred CCCCccccCCCCC-CcccccccccCccHHHHHHHHHhhhcC----------CCceEEEEeCcccccchHHHHHHHHHhhc
Q 022717 37 GRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVT 105 (293)
Q Consensus 37 G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~~ 105 (293)
|+-.+.|+..... ++...+|+||+++|.|+|+|+|.++.+ ++++|+|++|||++++|+++|+|++|+.+
T Consensus 107 ~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~ 186 (675)
T 1itz_A 107 GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHW 186 (675)
T ss_dssp TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHh
Confidence 4445778875443 455568999999999999999998765 78999999999999999999999999999
Q ss_pred CC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EEeCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 106 EA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 106 ~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~VdG~-D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+| |+|+||+||+|++++++.... ..++.+++++|||+++ +|||| |++++++++++|.+ ..++|+||+++|+|.
T Consensus 187 ~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg 262 (675)
T 1itz_A 187 GLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIG 262 (675)
T ss_dssp TCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred CCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecc
Confidence 99 599999999999998876655 6799999999999999 89999 99999999988875 258899999999999
Q ss_pred CCCCCCCCCC----CCCChHHHHHHH
Q 022717 183 GHHTTSDDST----KYRPVDEIEWWR 204 (293)
Q Consensus 183 ~gHs~~Dd~~----~Yr~~~e~~~~~ 204 (293)
+||+...++. .+.+++|++.++
T Consensus 263 ~G~~~~~~~~~~H~~~~~~e~~~~~~ 288 (675)
T 1itz_A 263 FGSPNKANSYSVHGSALGAKEVEATR 288 (675)
T ss_dssp TTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred cCcccccCcccccCCCCCHHHHHHHH
Confidence 9998654433 245667777765
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=242.07 Aligned_cols=171 Identities=24% Similarity=0.289 Sum_probs=128.1
Q ss_pred HHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCC----------Cc
Q 022717 13 LLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRK----------DA 79 (293)
Q Consensus 13 ~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~----------~~ 79 (293)
+...|. +.++ +..|+. .|+..+.|+.....+.+ ..+|+||+++|+|+|+|+|.++.+. ++
T Consensus 116 l~l~G~~~~~~~-l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~ 188 (711)
T 3uk1_A 116 LHLTGYDLPIEE-LKNFRQ------LHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDH 188 (711)
T ss_dssp HHHHTCSCCHHH-HHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCC
T ss_pred HHHhCCCCCHHH-HHhhcc------ccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCC
Confidence 444564 4454 454532 24445678766544444 4689999999999999999986543 78
Q ss_pred eEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHHH
Q 022717 80 CAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYS 157 (293)
Q Consensus 80 ~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~ 157 (293)
+|+|++|||++++|+++|+|++|+.++|| +|+|++||+|++++++.... ..|+.+++++|||++++ |||||++++.+
T Consensus 189 ~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~ 267 (711)
T 3uk1_A 189 HTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDA 267 (711)
T ss_dssp CEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHH
T ss_pred eEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 99999999999999999999999999997 99999999999998876654 57999999999999999 89999999999
Q ss_pred HHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 022717 158 AVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 195 (293)
Q Consensus 158 a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 195 (293)
++++|. +.++|+||+++|+|.+||+...++..|.
T Consensus 268 Al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~H 301 (711)
T 3uk1_A 268 AIAKAK----RSDKPSLICCKTRIGNGAATKAGGHDVH 301 (711)
T ss_dssp HHHHHT----TCSSCEEEEEEC----------------
T ss_pred HHHHHH----hCCCCEEEEEccccccCCCCCCCccccc
Confidence 888775 3689999999999999998655544444
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=233.89 Aligned_cols=182 Identities=25% Similarity=0.296 Sum_probs=143.3
Q ss_pred HHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc-ccccccccCccHHHHHHHHHhhhcCC----------
Q 022717 11 GVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRK---------- 77 (293)
Q Consensus 11 ~~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~a~k~~~~---------- 77 (293)
+++...|. +.++ +..++. .|+-.+.|+.....+. ...+|++|+++|.|+|+|+|.++.+.
T Consensus 99 a~l~l~G~~~~~~~-l~~~rq------~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~ 171 (690)
T 3m49_A 99 SLLHLSGYDVTMDD-LKNFRQ------WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIV 171 (690)
T ss_dssp HHHHHTTSSCCHHH-HTTTTC------TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCS
T ss_pred HHHHHHCCCCCHHH-HHhhcc------CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccC
Confidence 34444664 4554 444432 3455567887654444 44589999999999999999986542
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAI 155 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v 155 (293)
+++|+|++|||++++|+++|+|++|+.++|| +|+|++||+|+|+++..... ..|+.+++++|||++++| ||||++++
T Consensus 172 d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l 250 (690)
T 3m49_A 172 DHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAI 250 (690)
T ss_dssp CCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHH
T ss_pred CCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHH
Confidence 7899999999999999999999999999997 99999999999998876543 578999999999999999 99999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChHHHHHH
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEWW 203 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~~ 203 (293)
.+++++|.+ ..++|+||+++|+|..|++...++..|. +.++++..
T Consensus 251 ~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~ 299 (690)
T 3m49_A 251 AKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLT 299 (690)
T ss_dssp HHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHH
T ss_pred HHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccccCCCCCHHHHHHH
Confidence 998877764 2589999999999999998655544332 23555544
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=231.27 Aligned_cols=186 Identities=23% Similarity=0.251 Sum_probs=141.0
Q ss_pred CCCc---hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCC--
Q 022717 6 SLRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRK-- 77 (293)
Q Consensus 6 ~yR~---~~~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~-- 77 (293)
.|-+ .+++...|. +.++ +..|+. .|+-.+.|+.....+.+ ..+|+||+++|+|+|+|+|.++.+.
T Consensus 67 GH~s~~lYa~l~l~G~~~~~~~-l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~ 139 (663)
T 3kom_A 67 GHGSMLLYSLLHLTGYDLSIED-IKNFRQ------LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRY 139 (663)
T ss_dssp SSCHHHHHHHHHHHTCSCCHHH-HTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhCCCCCHHH-HHhhcc------CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccc
Confidence 4555 333444564 4444 444532 24445678776544444 4689999999999999999987543
Q ss_pred --------CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EE
Q 022717 78 --------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RV 147 (293)
Q Consensus 78 --------~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~V 147 (293)
+++|+|++|||++++|+++|+|++|+.++|| +|+|++||+|+++++..... ..|+.+++++|||+++ +|
T Consensus 140 ~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~v 218 (663)
T 3kom_A 140 NTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYGWHVIENV 218 (663)
T ss_dssp CBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTTCEEEEEE
T ss_pred cccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCCCeEEEEE
Confidence 7899999999999999999999999999997 99999999999998876654 5799999999999999 89
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChHHHHH
Q 022717 148 DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEW 202 (293)
Q Consensus 148 dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~ 202 (293)
||||++++.+++++|.+ ..++|+||+++|+|.+||+...++..+. +++|++.
T Consensus 219 dG~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~ 274 (663)
T 3kom_A 219 DGHDFVAIEKAINEAHS---QQQKPTLICCKTVIGFGSPEKAGTASVHGSPLSDQERAS 274 (663)
T ss_dssp ETTCHHHHHHHHHHHHH---CSSSCEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh---cCCCCEEEEEecccccccCCCCCCccccCCCCCHHHHHH
Confidence 99999999998887764 1589999999999999998765443332 3455554
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=229.74 Aligned_cols=174 Identities=21% Similarity=0.242 Sum_probs=141.0
Q ss_pred CCCc---hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC---
Q 022717 6 SLRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK--- 77 (293)
Q Consensus 6 ~yR~---~~~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~--- 77 (293)
.|-+ .+++...|. +.++ +..|+. .|+-.+.|+.....+....+|+||+++|.|+|+|+|.++.+.
T Consensus 66 GH~~~~lYa~l~l~G~~~~~~~-l~~~r~------~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n 138 (632)
T 3l84_A 66 GHASALLYSFLHLSGYDLSLED-LKNFRQ------LHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLG 138 (632)
T ss_dssp GGGHHHHHHHHHHHTCSCCHHH-HTTTTC------TTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHhCCCCCHHH-HHHHhc------CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccc
Confidence 3555 445555664 4444 444532 244456788763334445689999999999999999997643
Q ss_pred ----CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 78 ----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 78 ----~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
+++|+|++|||++++|+++|+|++|+.++|| +|+|++||+|+++++..... ..++.+++++|||++++|||||+
T Consensus 139 ~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~ 217 (632)
T 3l84_A 139 SDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDY 217 (632)
T ss_dssp TTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCH
T ss_pred cCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCH
Confidence 8999999999999999999999999999997 99999999999998876554 57899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC
Q 022717 153 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS 191 (293)
Q Consensus 153 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~ 191 (293)
+++.+++++|.+ .++|+||+++|++.+||+...++
T Consensus 218 ~~l~~al~~A~~----~~~P~lI~v~T~kG~G~~~~e~~ 252 (632)
T 3l84_A 218 EEINKALEQAKK----STKPCLIIAKTTIAKGAGELEGS 252 (632)
T ss_dssp HHHHHHHHHHHT----CSSCEEEEEECCTTTTCGGGTTC
T ss_pred HHHHHHHHHHHh----CCCCEEEEEeeEeeecCCCCCCc
Confidence 999998888764 68999999999999999865443
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=231.83 Aligned_cols=171 Identities=17% Similarity=0.187 Sum_probs=129.2
Q ss_pred cCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceEEE
Q 022717 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVT 83 (293)
Q Consensus 5 ~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~ 83 (293)
+.||++++.+.+|. .++ +..++. .| +.+.|+.... ......+|++|+++|+|+|+|+|.++++++++|||
T Consensus 78 ~gH~~y~~~~l~G~-~~~-~~~~r~------~~-g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~ 148 (621)
T 2o1s_A 78 VGHQAYPHKILTGR-RDK-IGTIRQ------KG-GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVC 148 (621)
T ss_dssp SSTTCHHHHHTTTT-GGG-GGGTTS------TT-SCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CchHHHHHHHHhCC-Hhh-hhcccc------cC-CCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEE
Confidence 78999999999997 222 222321 11 1334544322 22333589999999999999999999999999999
Q ss_pred EeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCc---------------------------------
Q 022717 84 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS--------------------------------- 130 (293)
Q Consensus 84 ~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~--------------------------------- 130 (293)
++|||++++|+++|+|++|+.+++|+||||+||+|+++++.+.+...
T Consensus 149 v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r 228 (621)
T 2o1s_A 149 VIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKR 228 (621)
T ss_dssp EEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC----------------------------------------------
T ss_pred EEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999998765432100
Q ss_pred -ccH-------HHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 131 -DGA-------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 131 -~d~-------~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
.++ ..++++|||+++ +|||+|++++.+++++|.+ .++|++|+++|+|..||+..
T Consensus 229 ~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 229 TEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp ----------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC
T ss_pred HHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChh
Confidence 011 478999999999 9999999999999998875 58999999999999999854
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-26 Score=229.99 Aligned_cols=132 Identities=21% Similarity=0.238 Sum_probs=114.6
Q ss_pred cccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccC-
Q 022717 51 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR- 129 (293)
Q Consensus 51 ~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~- 129 (293)
....+|++|+++|+|+|+|+|.|+++++++|||++|||++++|+++|+||+|+.+++|+||||+||+|+++++...+..
T Consensus 118 ~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~ 197 (629)
T 2o1x_A 118 DAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKF 197 (629)
T ss_dssp CCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHH
T ss_pred CCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHH
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999876542100
Q ss_pred ----------------------------------cccH-------H--HHHhhcCceEE-EEeCCCHHHHHHHHHHHHHH
Q 022717 130 ----------------------------------SDGA-------V--VKGRAYGVRSI-RVDGNDALAIYSAVHAAREM 165 (293)
Q Consensus 130 ----------------------------------~~d~-------~--~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~ 165 (293)
..++ . +++++|||+++ +|||||++++.+++++|.+
T Consensus 198 ~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~- 276 (629)
T 2o1x_A 198 MRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD- 276 (629)
T ss_dssp C---------------------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT-
T ss_pred HHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh-
Confidence 0132 3 78999999999 9999999999998888753
Q ss_pred hhccCCcEEEEEEeecCCCCC
Q 022717 166 AIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 166 ~r~~~gP~lIe~~t~R~~gHs 186 (293)
.++|++|++.|++..||+
T Consensus 277 ---~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 277 ---LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp ---SSSEEEEEEECCTTTTCH
T ss_pred ---cCCCEEEEEEEecCCCCC
Confidence 689999999999999987
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=223.58 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=130.6
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccc---
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST--- 122 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~--- 122 (293)
..++.+ .++||+++|.|+|++++. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++..
T Consensus 411 ~~~~~~~~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~ 484 (603)
T 4feg_A 411 NRHITSNLFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQ 484 (603)
T ss_dssp CEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHH
T ss_pred CceecCcccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHH
Confidence 445543 589999999999999986 57899999999999876 566999999999977766666 588632
Q ss_pred -------cccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe---ecCCCCCCCCCCC
Q 022717 123 -------PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT---YRVGHHTTSDDST 192 (293)
Q Consensus 123 -------~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t---~R~~gHs~~Dd~~ 192 (293)
.........|+.+++++||+++++|+ +++++.+++++|++ .+.+||+|||+.| +|..+|.+.|++.
T Consensus 485 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~~~ 560 (603)
T 4feg_A 485 EDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLDSA 560 (603)
T ss_dssp HHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCCTT
T ss_pred HHhcCCCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhhhh
Confidence 11122345789999999999999998 56678777777762 1478999999999 5667899999999
Q ss_pred CCCChH--HHHHHHhCCCcHHHHHHHHHHCCCCCHHH
Q 022717 193 KYRPVD--EIEWWRTTQDPVTRFRKWIESNGWWNGDI 227 (293)
Q Consensus 193 ~Yr~~~--e~~~~~~~~dPi~~~~~~L~~~g~~~~~~ 227 (293)
.||..+ +.+.|+ ++||+.+|+++|.++|+|++++
T Consensus 561 ~~~~~~~~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~ 596 (603)
T 4feg_A 561 MSSAADIEAFKQRY-EAQDLQPLSTYLKQFGLDDLQH 596 (603)
T ss_dssp TSCHHHHHHHHHHH-TCTTCCCHHHHHHHTTC-----
T ss_pred hhhHHHHHHHHhhC-CcccCCchHHHHHHcCCchhhh
Confidence 998664 556665 5899999999999999999875
|
| >2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=223.20 Aligned_cols=193 Identities=18% Similarity=0.159 Sum_probs=149.4
Q ss_pred cCCCc---hHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCC--cccccccccCccHHHHHHHHHhhh-----
Q 022717 5 SSLRE---PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN--YFTVSSTIATQLPHAVGAAYALKM----- 74 (293)
Q Consensus 5 ~~yR~---~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~--~~~~~g~lG~~lp~A~G~A~a~k~----- 74 (293)
..|-+ .+++...|.-.++-|..|+.- ..+.+++.|+.....+ +...+|++|.+++.|+|+|++.|+
T Consensus 140 ~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~----~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~ 215 (886)
T 2qtc_A 140 QGHISPGVYARAFLEGRLTQEQLDNFRQE----VHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 215 (886)
T ss_dssp CGGGHHHHHHHHHHTTSSCHHHHTTBTCC----TTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHhCCCCHHHHHhccCC----CCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccc
Confidence 34555 455667886555556666432 1245667776543322 344689999999999999999998
Q ss_pred --cCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCcc-CcccHHHHHhhcCceEEEE---
Q 022717 75 --DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQF-RSDGAVVKGRAYGVRSIRV--- 147 (293)
Q Consensus 75 --~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~-~~~d~~~~a~a~G~~~~~V--- 147 (293)
++.+++|+|++|||++++|+++|+||+|+.++|+ +||||+||++++++++.... ...++.++++++||++++|
T Consensus 216 ~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g 295 (886)
T 2qtc_A 216 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG 295 (886)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred cccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecc
Confidence 7789999999999999999999999999999995 99999999999998876532 3467899999999999998
Q ss_pred ------------------------------------------------------------------eCCCHHHHHHHHHH
Q 022717 148 ------------------------------------------------------------------DGNDALAIYSAVHA 161 (293)
Q Consensus 148 ------------------------------------------------------------------dG~D~~~v~~a~~~ 161 (293)
||||+.+|++++++
T Consensus 296 ~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~ 375 (886)
T 2qtc_A 296 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK 375 (886)
T ss_dssp TTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHH
T ss_pred hhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHH
Confidence 79999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCC--CCCCC----CCCChHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTT--SDDST----KYRPVDEIEWWR 204 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~--~Dd~~----~Yr~~~e~~~~~ 204 (293)
|.+. .++|++|+++|++.+||+. .++.. .|++.++++.|+
T Consensus 376 A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r 421 (886)
T 2qtc_A 376 AQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIR 421 (886)
T ss_dssp HHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHH
T ss_pred HHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHH
Confidence 9863 3689999999999999973 22222 277788888886
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=168.39 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=116.9
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----cccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++..+....++ ...+.|.+ .++. ....+++.+ .|+||+++|.|+|+++|. ++++|+|++|
T Consensus 364 ~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~----~~~~vv~i~G 439 (590)
T 1v5e_A 364 LQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWNIIG 439 (590)
T ss_dssp CCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEE
T ss_pred cCHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhC----CCCeEEEEEe
Confidence 6777887777654432 11233221 1222 123445543 689999999999999996 5789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEE-EEeCCccccccccCc---------cCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPISDQ---------FRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~~~~---------~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+++++ .++|++|+++++|+++| ++||+|++....+.. ....|+.++|++||+++++|+ +++++.
T Consensus 440 DG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~ 515 (590)
T 1v5e_A 440 DGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMD 515 (590)
T ss_dssp HHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHH
T ss_pred chHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHH
Confidence 9999875 57899999999995555 455589887543221 234689999999999999998 689999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+++++|++..|+ ++|+|||+.|+|..
T Consensus 516 ~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 516 RVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred HHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 999999876554 88999999998753
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-18 Score=169.31 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=99.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~-------- 125 (293)
+|++|+++|.|+|+++|. ++++|||++|||+++++ .++|++|+++++|+++ |++||+|++....+
T Consensus 441 ~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~ 514 (616)
T 2pan_A 441 AGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYC 514 (616)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCS
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 589999999999999996 57899999999999875 4679999999999655 55555688753211
Q ss_pred ------C--ccC----cccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 126 ------D--QFR----SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 126 ------~--~~~----~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
. ... ..|+.+++++||+++++|+ +++++.+++++|++++|+.++|+|||+.|+|..
T Consensus 515 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 515 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp CBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred ccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 0 011 2689999999999999997 688999999999987777789999999998764
|
| >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=167.80 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=118.5
Q ss_pred CccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchH---HHHHHHHHhhcCC-CEEEEEEe
Q 022717 40 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICRN 115 (293)
Q Consensus 40 ~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~---~~Eal~~A~~~~l-pvi~vi~N 115 (293)
.++|+.....+....+|+||++++.|+|+|+ .+++.+|+|++|||+.++|. .||+.+++..+++ ++|.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 7889854333444568999999999999995 45788999999999999999 9999999999999 59999999
Q ss_pred CCccccccccCc-cCcccHHHHHhhcCceEE-EEeC-C--CHHHHHHHHHHHHHH-----------hhc--cCCc--EEE
Q 022717 116 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSI-RVDG-N--DALAIYSAVHAAREM-----------AIG--EGRP--ILI 175 (293)
Q Consensus 116 N~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~-~VdG-~--D~~~v~~a~~~a~~~-----------~r~--~~gP--~lI 175 (293)
|+++|+.++... .+..++.+++++|||.++ .||| + |++++..++.+|++. +|+ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999888633 356789999999999999 8999 9 999999888766632 344 3689 999
Q ss_pred EEEeecCC
Q 022717 176 EALTYRVG 183 (293)
Q Consensus 176 e~~t~R~~ 183 (293)
.++|...+
T Consensus 315 i~rT~kG~ 322 (845)
T 3ahc_A 315 IFRTPKGW 322 (845)
T ss_dssp EEECCTTT
T ss_pred EEECcccC
Confidence 99999888
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=165.40 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=113.4
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCC---C-cc-ccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQ---M-PI-HYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~---~-~~-h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
.+++..++..+....+. ...+.| + .. ++. ....+++.. .|+||+++|.|+|+++|.| +++++|+|++
T Consensus 369 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~ 446 (563)
T 2uz1_A 369 ALHPFHASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL--EAGRRTILVT 446 (563)
T ss_dssp SCCHHHHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHH--HHTCEEEEEE
T ss_pred CcCHHHHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhh--CCCCeEEEEE
Confidence 46677788877655432 112222 1 11 121 223445543 5899999999999999986 5678999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEE-EEEEeCCcccccccc-------Cc----cCcccHHHHHhhcCceEEEEeCCCHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS-------DQ----FRSDGAVVKGRAYGVRSIRVDGNDAL 153 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~-------~~----~~~~d~~~~a~a~G~~~~~VdG~D~~ 153 (293)
|||+++++ .++|++|+++++|++ +|++||+|++....+ .. ....|+.+++++||+++++|+ +++
T Consensus 447 GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~ 522 (563)
T 2uz1_A 447 GDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVE 522 (563)
T ss_dssp EHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHH
T ss_pred ccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHH
Confidence 99999876 457999999999955 555566788865321 11 134689999999999999997 788
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 154 AIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 154 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++.+++++|++ .++|+|||+.|++
T Consensus 523 ~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 523 SFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp HHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred HHHHHHHHHHH----CCCCEEEEEEecc
Confidence 99998888875 6899999999974
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=165.69 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=113.4
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----ccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++..+....+. ...+.|.+ .++ .....+++.+ .|+||+++|.|+|+++|. ++++|+|++|
T Consensus 375 l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv~i~G 450 (589)
T 2pgn_A 375 ASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTG 450 (589)
T ss_dssp CCHHHHHHHHHHTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHC----TTSCEEEEEE
T ss_pred cCHHHHHHHHHHhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhC----CCCcEEEEEe
Confidence 6777788777655432 11233322 122 2233456654 589999999999999996 5789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc---------CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS---------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~---------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|+++ .++|++|+++++|+++ |++||+|++....+ ......|+.+++++||+++++|+ +++++.
T Consensus 451 DG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~ 526 (589)
T 2pgn_A 451 DGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVR--ETGDIA 526 (589)
T ss_dssp HHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECT--TTCCHH
T ss_pred eHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEEC--CHHHHH
Confidence 9999875 4789999999999555 55555688765321 22335799999999999999998 566888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
++++++++ .++|+|||+.|+|..
T Consensus 527 ~al~~a~~----~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 527 GALQRAID----SGKPALIEIPVSKTQ 549 (589)
T ss_dssp HHHHHHHH----HCSCEEEEEECCSSS
T ss_pred HHHHHHHh----CCCCEEEEEEecCCC
Confidence 88888875 589999999998764
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=163.78 Aligned_cols=152 Identities=19% Similarity=0.277 Sum_probs=109.2
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----cccCC-CCCCcccc-cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHYGS-NKHNYFTV-SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~~-~~~~~~~~-~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++..+....+. ...+.+.+ .++.. ....++.+ .|+||+++|.|+|+++|. ++++|||++||
T Consensus 353 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a~----~~~~vv~~~GD 428 (528)
T 1q6z_A 353 LHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAE----PERQVIAVIGD 428 (528)
T ss_dssp BCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHC----TTSCEEEEEEH
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHhC----CCCcEEEEECC
Confidence 5677777766554432 11222211 12222 23344443 389999999999999996 46789999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC----------ccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD----------QFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~----------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+++++ +++|++|+++++|+++||.|| +|++.+..+. .....|+.+++++||+++++|+ +.+++.
T Consensus 429 G~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~ 504 (528)
T 1q6z_A 429 GSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLK 504 (528)
T ss_dssp HHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHH
T ss_pred cHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHH
Confidence 999977 678999999999966666555 6888643211 1134689999999999999998 567887
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++++++++ .++|+|||+.|+|
T Consensus 505 ~al~~a~~----~~gp~liev~~~~ 525 (528)
T 1q6z_A 505 GSLQEALS----AKGPVLIEVSTVS 525 (528)
T ss_dssp HHHHHHHT----CSSCEEEEEEBCC
T ss_pred HHHHHHHH----CCCcEEEEEEecC
Confidence 77777653 6899999999975
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=164.77 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=110.4
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----cccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++..+....+. ...+.|.. .++. ..+.+++.. .++||+++|.|+|+++|. ++++|+|++|
T Consensus 371 l~~~~v~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv~i~G 446 (566)
T 1ozh_A 371 LHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSG 446 (566)
T ss_dssp BCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHS----TTSEEEEEEE
T ss_pred cCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCCEEEEEc
Confidence 5667777766544332 12233321 1221 223445443 589999999999999996 5789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCcccccccc---------CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS---------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~---------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+++++ .++|++|+++++|+++|| +||+|++....+ ......|+.+++++||+++++|+ +++++.
T Consensus 447 DG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~ 522 (566)
T 1ozh_A 447 DGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALE 522 (566)
T ss_dssp HHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHH
T ss_pred ChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHH
Confidence 9999864 456999999999966555 555688764321 12334799999999999999998 677888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+++++|++ .++|+|||+.|+|.
T Consensus 523 ~al~~a~~----~~gp~liev~~~~~ 544 (566)
T 1ozh_A 523 PTLRAAMD----VDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHHHHHH----SSSCEEEEEEBCCT
T ss_pred HHHHHHHh----CCCCEEEEEEeCCC
Confidence 88888875 68999999999763
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=164.39 Aligned_cols=121 Identities=25% Similarity=0.346 Sum_probs=97.8
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~- 124 (293)
..++.. .|+||+++|.|+|+++|. ++++|+|++|||+++++ .++|++|+++++|++ +|++||+|++....
T Consensus 427 ~~~~~~~g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~ 500 (573)
T 2iht_A 427 FGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQ 500 (573)
T ss_dssp TSEECCSSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHH
T ss_pred CeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHH
Confidence 445543 589999999999999996 57889999999999875 467999999999955 55556668886532
Q ss_pred --------c--CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --------S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --------~--~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. ......|+.+++++||+++++|+ +.+++.+++++|++ .++|+|||+.|+|
T Consensus 501 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 501 NIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred HHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334699999999999999997 78888888887764 6899999999987
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=161.64 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=96.4
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~ 125 (293)
.+++. ..|+||+++|.|+|+++|. ++++|||++|||+++++ .++|++|+++++|+ ++|++||+|++....+
T Consensus 397 ~~~~~~~~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~ 470 (549)
T 3eya_A 397 RRLLGSFNHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEM 470 (549)
T ss_dssp CEEECCTTTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC----
T ss_pred CcEEeCCCCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHH
Confidence 44554 3589999999999999986 57899999999999765 56799999999995 5556666787643211
Q ss_pred ---------CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 126 ---------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 126 ---------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
......|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.+..
T Consensus 471 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~ 531 (549)
T 3eya_A 471 KAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAKEE 531 (549)
T ss_dssp --------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCCC
T ss_pred HhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 11234699999999999999997 67788888888775 689999999998753
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=161.21 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=113.1
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCC----CccccCCC-CCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQ----MPIHYGSN-KHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~----~~~h~~~~-~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++..+....+. ...+.| ...|+..+ ..+++. ..++||+++|.|+|+++|. ++++|+|++||
T Consensus 365 ~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GD 440 (568)
T 2wvg_A 365 LVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNILMVGD 440 (568)
T ss_dssp CCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEH
T ss_pred cCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhC----CCCcEEEEEcC
Confidence 5677788877655443 112222 12233332 344553 3689999999999999996 57899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCE-EEEEEeCCccccccccC----ccCcccHHHHHhhcCc---------eEEEEeCCCHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISD----QFRSDGAVVKGRAYGV---------RSIRVDGNDAL 153 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~~----~~~~~d~~~~a~a~G~---------~~~~VdG~D~~ 153 (293)
|+++++ .++|++|.++++|+ ++|++||+|++...... .....|+.+++++||+ ++++|+ +.+
T Consensus 441 Gs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~ 516 (568)
T 2wvg_A 441 GSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGG 516 (568)
T ss_dssp HHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHH
T ss_pred hhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHH
Confidence 999863 55699999999995 55667778998754432 2234689999999999 899997 688
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 154 AIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 154 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++.++++++++. .++|+|||+.|+|
T Consensus 517 el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 517 ELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp HHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred HHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 999988888752 2799999999976
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-17 Score=165.60 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=98.7
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~ 125 (293)
..++.. .|+||+++|.|+|+++|. ++++|||++|||+|+++ .++|++|+++++|+ |+|++||+|++....+
T Consensus 504 ~~~~~sg~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~ 577 (677)
T 1t9b_A 504 HTFITSGGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQ 577 (677)
T ss_dssp TCEECCCSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHH
T ss_pred CeEEeCCCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhh
Confidence 445543 589999999999999996 68899999999999864 45599999999995 5556666798754221
Q ss_pred -----C-----ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 126 -----D-----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 126 -----~-----~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
. .....|+.++|++||+++++|+ +++++.++++++++ .++|+|||+.|+|..
T Consensus 578 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 578 SLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKV 639 (677)
T ss_dssp HHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSC
T ss_pred hhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCc
Confidence 1 1235689999999999999997 78899998888875 589999999999854
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=164.71 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=112.8
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCCc----cccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQMP----IHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~~----~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++.++....++. ..+.|.+ .++.. ....++.+ .|+||+++|.|+|+++|.+.++.+++|+|++||
T Consensus 365 ~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GD 444 (563)
T 2vk8_A 365 LKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGD 444 (563)
T ss_dssp CCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEH
T ss_pred cCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcc
Confidence 67788888876554321 1222211 11211 22345543 689999999999999999887888999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEE-EeCCcccccccc------CccCcccHHHHHhhcCce---EEEEeCCCHHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------DQFRSDGAVVKGRAYGVR---SIRVDGNDALAIYS 157 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~------~~~~~~d~~~~a~a~G~~---~~~VdG~D~~~v~~ 157 (293)
|+|+++ +++|++|+++++|+++|| +||+|++..... ......|+.++|++||++ +++|+ +++++.+
T Consensus 445 G~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~ 520 (563)
T 2vk8_A 445 GSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDK 520 (563)
T ss_dssp HHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHH
T ss_pred hHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHH
Confidence 999864 567999999999955555 555698864321 112346899999999999 99998 6888888
Q ss_pred HHH-HHHHHhhccCCcEEEEEEeec
Q 022717 158 AVH-AAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 158 a~~-~a~~~~r~~~gP~lIe~~t~R 181 (293)
+++ ++++ ..++|+|||+.|++
T Consensus 521 al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 521 LTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp HHTCTTTT---SCSSEEEEEEECCT
T ss_pred HHHHHHHh---CCCCcEEEEEEeCc
Confidence 877 6553 23579999999975
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-17 Score=160.73 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=98.0
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~ 125 (293)
..++.. +|++|+++|.|+|+++|. ++++|||++|||+++++ .++|++|+++++|+++ |++||+|++....+
T Consensus 417 ~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~ 490 (590)
T 1ybh_A 417 RQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWE 490 (590)
T ss_dssp TSEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHH
T ss_pred CeEEeCCCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHH
Confidence 444443 589999999999999996 57899999999999865 4579999999999554 55666788754211
Q ss_pred ----------Ccc--------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 126 ----------DQF--------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 126 ----------~~~--------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
... ...|+.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|+|..
T Consensus 491 ~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 491 DRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQE 560 (590)
T ss_dssp HHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTC
T ss_pred HHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCc
Confidence 101 13689999999999999997 78899888888875 589999999998864
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-17 Score=161.09 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=112.1
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCC----CccccCCC-CCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQ----MPIHYGSN-KHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~----~~~h~~~~-~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++..+....+. ...+.| ...++..+ ..+++. ..++||+++|.|+|+++|. ++++|+|++||
T Consensus 361 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~----~~~~vv~~~GD 436 (566)
T 2vbi_A 361 LTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGS----QDRQHVVMVGD 436 (566)
T ss_dssp CCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTC----TTSEEEEEEEH
T ss_pred cCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheECCCCCEEEecCcccchhhHHHHHHHHHHhC----CCCcEEEEEcc
Confidence 5677777776554432 112222 12233322 234553 3689999999999999986 57899999999
Q ss_pred ccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccC----ccCcccHHHHHhhcCc-----eEEEEeCCCHHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD----QFRSDGAVVKGRAYGV-----RSIRVDGNDALAIYS 157 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~----~~~~~d~~~~a~a~G~-----~~~~VdG~D~~~v~~ 157 (293)
|+++++ .++|++|+++++| +++|++||+|++...... .....|+.+++++||+ ++++|+ +++++.+
T Consensus 437 G~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~ 512 (566)
T 2vbi_A 437 GSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTE 512 (566)
T ss_dssp HHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHH
T ss_pred hHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHH
Confidence 999864 4569999999999 555666668998765432 2234689999999999 999998 7889998
Q ss_pred HHHHHHHHhhcc-CCcEEEEEEeec
Q 022717 158 AVHAAREMAIGE-GRPILIEALTYR 181 (293)
Q Consensus 158 a~~~a~~~~r~~-~gP~lIe~~t~R 181 (293)
+++++++ . ++|+|||+.|+|
T Consensus 513 al~~a~~----~~~gp~liev~~~~ 533 (566)
T 2vbi_A 513 AIARAKA----NTRGPTLIECQIDR 533 (566)
T ss_dssp HHHHHHH----CCSSCEEEEEECCT
T ss_pred HHHHHHh----cCCCcEEEEEEeCc
Confidence 8888875 4 799999999976
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-17 Score=160.33 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=109.1
Q ss_pred CCCHHHHHHHhhcCCCC---CCC--CCCCcc--cc-CCCCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 17 GFSMQEFANQCFGNKAD---YGK--GRQMPI--HY-GSNKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~--G~~~~~--h~-~~~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
.+++..++..+....+. ... |..+.. ++ .....+++. ..++||+++|.|+|+++|. ++++|||++|
T Consensus 376 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~----~~~~vv~~~G 451 (570)
T 2vbf_A 376 PLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIAD----KESRHLLFIG 451 (570)
T ss_dssp BCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEE
T ss_pred CcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHhcccCCCCeEecCccchhhhhhHHHHHHHHHhC----CCCcEEEEEc
Confidence 36677777776554432 112 221111 11 112234543 3689999999999999996 5789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc------CccCcccHHHHHhhcCce-----EEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS------DQFRSDGAVVKGRAYGVR-----SIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~------~~~~~~d~~~~a~a~G~~-----~~~VdG~D~~~ 154 (293)
||+++++ .++|++|+++++|+ ++|++||+|++..... ......|+.+++++||++ +++|+ ++++
T Consensus 452 DG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~e 527 (570)
T 2vbf_A 452 DGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENE 527 (570)
T ss_dssp HHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHH
T ss_pred chhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHH
Confidence 9999864 45699999999995 5556666898865322 112346899999999998 88997 6888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++++. ++.++|+|||+.|+|
T Consensus 528 l~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 528 FVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp HHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred HHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 888887742 346889999999976
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-17 Score=161.04 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=96.9
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~ 125 (293)
..++.. .|+||+++|.|+|+|+|. ++++|+|++|||+++ +..++|++|+++++|++ +|++||+|++....+
T Consensus 413 ~~~~~~~~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~ 486 (565)
T 2nxw_A 413 AGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQ 486 (565)
T ss_dssp SCEECCTTTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHC
T ss_pred cEEEccCccccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeec
Confidence 344443 589999999999999996 578999999999998 45677999999999955 555666798864321
Q ss_pred -----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE-EEEEEeec
Q 022717 126 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI-LIEALTYR 181 (293)
Q Consensus 126 -----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~-lIe~~t~R 181 (293)
......|+.++|++||+++++|+ +++++.++++++++ .++|+ |||+.|+|
T Consensus 487 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 487 PESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp TTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred ccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 12245699999999999999998 68889888888875 57898 99999975
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-17 Score=158.89 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=108.0
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCcc----ccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMPI----HYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~~----h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++..+....+. ...+.|.+. ++. .+..+++.+ .|+||+++|.|+|+++|. ++++|||++||
T Consensus 360 ~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GD 435 (552)
T 1ovm_A 360 LTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGD 435 (552)
T ss_dssp CCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEH
T ss_pred cCHHHHHHHHHHhcCCCCEEEECCchHHHHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHHhC----CCCcEEEEECc
Confidence 6677777776544332 112222211 111 122335543 689999999999999996 47899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc------CccCcccHHHHHhhcCc----eEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS------DQFRSDGAVVKGRAYGV----RSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~------~~~~~~d~~~~a~a~G~----~~~~VdG~D~~~v~ 156 (293)
|+++++ .++|.+|+++++|+++ |++||+|++..... ......|+.+++++||+ ++++|+ +++++.
T Consensus 436 G~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~ 511 (552)
T 1ovm_A 436 GAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLA 511 (552)
T ss_dssp HHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHH
T ss_pred hHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHH
Confidence 999854 5669999999999555 55555798864321 11234689999999999 999998 678888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+++++++ +.++|+|||+.|++
T Consensus 512 ~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 512 DVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp HHHHHHT----TCSSEEEEEEECCT
T ss_pred HHHHHHH----hCCCCEEEEEEcCc
Confidence 8777765 46899999999975
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=155.78 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=93.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-c-cccccc--cC----
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI--SD---- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~-~~~~~~--~~---- 126 (293)
.|+||+++|.|+|+++| ++++|+|++|||+|++. .++|++|+++++|+++||.||+ | ++.... ..
T Consensus 425 ~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~ 497 (568)
T 2c31_A 425 WGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISC 497 (568)
T ss_dssp TTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCT
T ss_pred CccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCccc
Confidence 58999999999999998 47889999999999863 4669999999999777777776 3 443211 00
Q ss_pred -ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 127 -QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 127 -~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.....|+.++|++||+++++|+ +++++.++++++++ .++|+|||+.|+|.
T Consensus 498 ~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 498 TRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp TBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred CcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 0345699999999999999997 78999999988875 58899999999874
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=154.68 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=93.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-c-cccccc-------
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI------- 124 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~-~~~~~~------- 124 (293)
..|+||+++|.|+|+++| ++++|+|++|||+|++. .++|.+|+++++|+++||.||+ | ++....
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 491 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAP 491 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCC
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCc
Confidence 368999999999999998 47889999999999764 3569999999999777766665 3 543211
Q ss_pred cC--ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 125 SD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 125 ~~--~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.. .....|+.++|++||+++++|+ +++++.++++++++ .++|+|||+.|+|.
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 545 (564)
T 2q28_A 492 SPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPA 545 (564)
T ss_dssp CTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred cccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 00 1124689999999999999997 78899999988875 58899999999875
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-16 Score=157.09 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=106.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCcc-----ccCCC--CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMPI-----HYGSN--KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~~-----h~~~~--~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+++..++..+....++ ...+.+.+. ++... ...++.+ .+.||+++|.|+|+++|. +++|||++
T Consensus 405 ~~~~~~~~~L~~~lp~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala~-----~~~vv~i~ 479 (604)
T 2x7j_A 405 SFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEGT-----KAPVTLVI 479 (604)
T ss_dssp TSHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHHH-----TSCEEEEE
T ss_pred CCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhcC-----CCcEEEEE
Confidence 5677777776654432 112333211 12111 3455544 468999999999999993 67899999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccccC------------ccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD------------QFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~~------------~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
|||+|+++ + ++|++|+++++|+++ |++||+|++...... .....|+.++|++||+++++|+ ++
T Consensus 480 GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~ 555 (604)
T 2x7j_A 480 GDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SW 555 (604)
T ss_dssp EHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SH
T ss_pred ccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CH
Confidence 99999875 3 459999999999555 556668887542210 1124689999999999999998 68
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 153 LAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 153 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+++.+++++|+ +.++|+|||+.|+|
T Consensus 556 ~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 556 DEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 88877777665 36899999999864
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-16 Score=152.54 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCHHHHHHHhhcCCCCC---CCCCCCcc-c---cC--CCCCCcccc---cccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 17 GFSMQEFANQCFGNKADY---GKGRQMPI-H---YG--SNKHNYFTV---SSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~~---~~G~~~~~-h---~~--~~~~~~~~~---~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.+++..++..+....++. ..|.++.. + +. .....++.. .|++|+ +|.|+|+++| ++++|||+
T Consensus 366 ~~~~~~~~~~l~~~l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-----~~~~vv~i 439 (556)
T 3hww_A 366 AFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-----SGKPTLAI 439 (556)
T ss_dssp SSSHHHHHHTGGGTCCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-----HCCCEEEE
T ss_pred CcCHHHHHHHHHHhCCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-----CCCcEEEE
Confidence 477888888876554431 12333211 1 11 112334433 456666 9999999998 26789999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc-------c---CccCcccHHHHHhhcCceEEEEeCCCHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S---DQFRSDGAVVKGRAYGVRSIRVDGNDAL 153 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~-------~---~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 153 (293)
+|||+|++. .++|++|+++++|+++||.||+ |++.... . ......|+.++|++||+++++|+ +.+
T Consensus 440 ~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~ 515 (556)
T 3hww_A 440 VGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQ 515 (556)
T ss_dssp EEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEECCS--SHH
T ss_pred EccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCCcEEecC--CHH
Confidence 999999754 3459999999999777666665 5654321 1 11235789999999999999997 677
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 154 AIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 154 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++.+++++++ +.++|+|||+.|++
T Consensus 516 ~l~~al~~a~----~~~gp~liev~~~~ 539 (556)
T 3hww_A 516 ELETAFADAW----RTPTTTVIEMVVND 539 (556)
T ss_dssp HHHHHHHHHT----TSSSEEEEEEECCS
T ss_pred HHHHHHHHHH----hCCCCEEEEEECCc
Confidence 8877777665 46899999999864
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=149.78 Aligned_cols=119 Identities=15% Similarity=0.062 Sum_probs=81.1
Q ss_pred Cccccccc--ccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc--
Q 022717 50 NYFTVSST--IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-- 124 (293)
Q Consensus 50 ~~~~~~g~--lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~-- 124 (293)
.++...|. +|+++|.|+|+|+ ++++|||++|||+|++. .++|++|+++++|+++||.|| +|++....
T Consensus 428 ~~~~~~G~~G~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~ 499 (578)
T 3lq1_A 428 KMLANRGANGIDGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQ 499 (578)
T ss_dssp EEECCCSSCCSSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC----------
T ss_pred eEEeCCCccccccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCcccccccc
Confidence 34444443 3446999999863 47889999999999753 456999999999976665555 68775421
Q ss_pred -c--C----c---cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 125 -S--D----Q---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 125 -~--~----~---~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+ . . ....||.++|++||+++++|+ +++++.++++++++ .++|+|||+.|.+.
T Consensus 500 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~ 561 (578)
T 3lq1_A 500 ANEPKYFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNRH 561 (578)
T ss_dssp ---------------CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC----
T ss_pred ccccchhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCcc
Confidence 1 0 0 124589999999999999997 78888888877764 68999999998763
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-10 Score=120.54 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=75.4
Q ss_pred CceEEEEeCcc-cccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccCc----------------cCcccHHHHHhh
Q 022717 78 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----------------FRSDGAVVKGRA 139 (293)
Q Consensus 78 ~~~vv~~~GDG-a~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~~----------------~~~~d~~~~a~a 139 (293)
++.||++.||| ++.+|. .+|.+|..+++||++||.||+ |+++..+... ....|+.++|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 788773 359999999999666665554 6665321110 123589999999
Q ss_pred cCceEEEE-eC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 140 YGVRSIRV-DG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 140 ~G~~~~~V-dG-~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
||++++.+ .- .++.++.+++++|++ .+||+||++.+.-.
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeecCc
Confidence 99999964 33 489999999999986 58999999988544
|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.077 Score=51.99 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc-ccCccCcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~-~~~~~~~~d~~~~a~a~G 141 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|...++|+|+|.-+-....... ...| ..|...+++.+-
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q--~~d~~~~~~~~~ 133 (573)
T 2iht_A 62 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPNDTHQ--CLDSVAIVAPMS 133 (573)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTT--CCCHHHHHGGGS
T ss_pred HHHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCcCccc--cCCHHHHHHhHh
Confidence 3566666554 3445666667777775 34467788888999999988766543322 1112 247778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...++. +++++...+++|+..+..++ ||+.|++-..
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 134 KYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred hEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 7777775 78888999999998888775 9999999764
|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.069 Score=52.56 Aligned_cols=109 Identities=18% Similarity=0.154 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|+++ ..-++..|...++|+|+|.-+-......... .-..|...+++.+-
T Consensus 63 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~~~--~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGTDA--FQETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCCCc--ccccCHHHHHHHHh
Confidence 34566776654 3455667777888776 2345778888999999998876543322111 11246778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...++. +++++..++++|+..++.+ .||+.|++-..
T Consensus 135 k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred CeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 6677775 7888999999999888876 48999998653
|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.088 Score=51.43 Aligned_cols=109 Identities=20% Similarity=0.102 Sum_probs=75.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCc-ccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS-DGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~-~d~~~~a~a~ 140 (293)
.-+|.|.|.+. ++-.++++..|=|+++. .-++..|...++|+|+|.-+-..........| . .|...+++.+
T Consensus 54 a~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q--~~~d~~~~~~~~ 125 (563)
T 2uz1_A 54 GHAAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETNTLQ--AGIDQVAMAAPI 125 (563)
T ss_dssp HHHHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTT--CCCCHHHHHGGG
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCchhhh--hhccHHHHhhhh
Confidence 34566766554 34456666667777762 34577788889999999887665432211111 2 4677888888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
--...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 126 TKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 77777775 78888899999998888765 9999998764
|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.076 Score=52.01 Aligned_cols=108 Identities=16% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|...++|+|+|.-+-..........| ..|...+++.+--
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk 133 (566)
T 1ozh_A 62 FMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTK 133 (566)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCS
T ss_pred HHHHHHHHHH---CCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhh
Confidence 3566666553 3445566666888886 234577788889999999887654332111111 2467778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...++. +++++...+++|+..+..+ .||+.|++-..
T Consensus 134 ~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 134 YAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 777775 7888888999999888877 49999998764
|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.14 Score=50.28 Aligned_cols=107 Identities=18% Similarity=0.113 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc-cCccCcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~-~~~~~~~d~~~~a~a~G 141 (293)
-+|.|.|.+. +.-.++++..|=|+++. .-++..|...++|+|+|.-+-........ ..| ..|... ++.+-
T Consensus 57 ~~A~GyAr~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~t 127 (589)
T 2pgn_A 57 WMVNGYNYVK---DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIA 127 (589)
T ss_dssp HHHHHHHHHH---TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTS
T ss_pred HHHHHHHHHH---CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccE
Confidence 3566766554 44567888889998862 34577888999999999887655432211 111 124445 55555
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 128 RSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 5566664 78888899999998888776 9999988764
|
| >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.13 Score=50.16 Aligned_cols=110 Identities=19% Similarity=0.109 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCcc---CcccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~---~~~d~~~ 135 (293)
.-+|.|.|.+. + -.++++..|=|+++ ..-++..|...++|+|+|+-+-........ .... ...|...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 54 GFSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred HHHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 34566766553 3 44555566777775 334577788899999999887665332110 0000 1125677
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
+.+.+--...++. +++++...+.+|+..+..+.||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d 169 (566)
T 2vbi_A 127 MARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIACN 169 (566)
T ss_dssp HHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 8888877777775 555666777777777777789999999764
|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.1 Score=50.89 Aligned_cols=107 Identities=14% Similarity=-0.066 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++. .-++..|...+.|+|+|.-+-......... .-..|...+++.+--
T Consensus 55 ~~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~~~--~Q~~d~~~~~~~~tk 126 (549)
T 3eya_A 55 FAAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSGY--FQETHPQELFRECSH 126 (549)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTSCC--TTCCCHHHHTSTTCS
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCCCC--CCccCHHHHHhhhhh
Confidence 3466666554 34456677778888862 345778888999999998765432211111 112366677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...++. +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 127 YCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEH
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 666665 67778888888888887788999999865
|
| >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.16 Score=49.56 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCcc---CcccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~---~~~d~~~ 135 (293)
.-+|.|.|.+. + -.++++..|=|+++ ..-++..|...++|+|+|.-+-........ .... ...|...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (568)
T 2wvg_A 54 GFSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 126 (568)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHH
Confidence 34566766554 4 45666667777775 344577788899999999887665432110 0000 1125677
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
+++.+--...++. +++++...+.+|+..+..+.||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 127 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 7777777777786 677777888888887777889999999764
|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=51.95 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|...++|+|+|.-+-........ .+-..|...+++.+--
T Consensus 134 ~aAdGyAr~t---Gkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~~--a~Q~~Dq~~i~~~~tk 205 (677)
T 1t9b_A 134 HMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGTD--AFQEADVVGISRSCTK 205 (677)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTSC--CTTCCCHHHHTGGGSS
T ss_pred HHHHHHHHHH---CCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCCC--CccccCHHHHhhhhee
Confidence 3566666554 3455677777888876 234577788889999999877554322111 1112366677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 206 ~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 206 WNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 667775 7889999999999888876 6899999973
|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.13 Score=50.26 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|...++|+|+|.-+-...............|...+++.+--
T Consensus 59 ~~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 132 (564)
T 2q28_A 59 YAAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAK 132 (564)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhh
Confidence 3466766553 3344566666777765 344577888899999999887654322100011112366777888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+.+|+..+..+ .||+.|++-..
T Consensus 133 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 133 AAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 777775 6777888889998888774 69999988653
|
| >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.13 Score=50.27 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccccc---CccCccc-HHHHHh
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQFRSDG-AVVKGR 138 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~---~~~~~~d-~~~~a~ 138 (293)
-+|.|.|.+. ++-.++++..|=|+++ ..-++..|...++|+|+|.-+-......... .+....| ...+++
T Consensus 73 ~~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~ 146 (565)
T 2nxw_A 73 FAADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146 (565)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHH
Confidence 3566776654 3445566666888776 2345777888999999998875432211100 0001123 556777
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.+--...++. +++++...+.+|+..+....||+.|++-..
T Consensus 147 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 147 EITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp TSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 7766666765 566666777777776666789999999854
|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.11 Score=51.04 Aligned_cols=107 Identities=20% Similarity=0.014 Sum_probs=71.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|+++ ..-++..|...++|+|+|.-+-..........| ..|...+++.+-
T Consensus 56 a~~A~GyAr~t---gk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~t 127 (590)
T 1v5e_A 56 AMAAVMQSKFG---GNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIA 127 (590)
T ss_dssp HHHHHHHHHTT---CCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCCHHHHHTTC
T ss_pred HHHHHHHHHHH---CCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccCHHHHHHhhc
Confidence 34466665543 3445666666877776 234577788889999999887765432211111 235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-....+. +++++...+++|+..+..++ ||+.| +-.
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~ 163 (590)
T 1v5e_A 128 VYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VPG 163 (590)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EET
T ss_pred cEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ecc
Confidence 5666665 78888889999998888776 89999 654
|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.14 Score=50.15 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|...++|+|+|.-+-...............|...+++.+--
T Consensus 61 ~~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 134 (568)
T 2c31_A 61 YAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCK 134 (568)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhh
Confidence 3466666553 3345666666777765 345677888899999999887654332200011112366677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc-cCCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~-~~gP~lIe~~t~ 180 (293)
...++. +++++...+.+|+..+.. ..||+.|++-..
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 135 ASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred eeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 677775 777888889999988877 468999988653
|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.12 Score=50.99 Aligned_cols=107 Identities=14% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++- .-++..|...+.|+|+|.-+-..........| ..|...+++.+--
T Consensus 64 ~aA~GyAr~t---g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q--~~d~~~~~~~~tk 135 (603)
T 4feg_A 64 MAAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ--EMNENPIYADVAD 135 (603)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTT--CCCCGGGGTTTCS
T ss_pred HHHHHHHHHh---CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCccc--cccHHHHhhhhce
Confidence 3466666554 34456667778888862 34577888899999999866443221111111 1245556666666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|. +++++...+.+|+..+....||+.|++-.
T Consensus 136 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 170 (603)
T 4feg_A 136 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 170 (603)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 666664 55567777777777666678999999864
|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.28 Score=48.41 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+.. ++-.++++..|=|+++- .-++..|..-+.|+|+|.-+-..........| ..|...+++.+--
T Consensus 79 ~~A~GyAr~tg--g~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q--~~d~~~~~~~~tk 151 (616)
T 2pan_A 79 HMAEGYTRATA--GNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKEDFQ--AVDIEAIAKPVSK 151 (616)
T ss_dssp HHHHHHHHHST--TCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTT--CCCHHHHHGGGSS
T ss_pred HHHHHHHHhcC--CCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccccc--ccCHHHHHHHHHH
Confidence 34666665530 23345566778887752 34577788889999999887654432211111 2467778888876
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...++. ++.++...+++|+..++.+ .||+.|++-.
T Consensus 152 ~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 152 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 677775 6778899999999888765 5899999865
|
| >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.15 Score=47.83 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=60.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccH-HHH-Hh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGA-VVK-GR 138 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~-~~~-a~ 138 (293)
+.+|+|++++ + .+.++...|.|-.. ..+.|..++..++|+|+++-+..... ..+..... .|. ..+ +.
T Consensus 77 ~~~a~Gaa~a----G-~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~--sd~~~~~~~~ 146 (395)
T 1yd7_A 77 IAAAIGASWA----G-AKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQ--GDIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHT----T-CCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC--------------------------
T ss_pred HHHHHHHHHh----C-CcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccch--hHHHHHHhcc
Confidence 4455555554 3 34666777887753 24556667778899888777654322 11111111 111 112 22
Q ss_pred --hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 139 --AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 139 --a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
.+|++.+... ++.+++..+..|++.+++.+.|+++....+ . +|+
T Consensus 147 ~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~ 192 (395)
T 1yd7_A 147 HGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHM 192 (395)
T ss_dssp --CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHC
T ss_pred CCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCe
Confidence 3456666554 899999999999988888889999988764 2 454
|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.19 Score=49.61 Aligned_cols=108 Identities=13% Similarity=0.032 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|..-++|+|+|.-+-..........| ..|...+++.+--
T Consensus 83 ~aA~GyAr~t---gkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 154 (604)
T 2x7j_A 83 FFALGLAKAK---QRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVK 154 (604)
T ss_dssp HHHHHHHHHH---TSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSS
T ss_pred HHHHHHHHhh---CCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhhee
Confidence 3566766554 3455677777888886 234577888889999999877654322111111 1244455566655
Q ss_pred eEEEEeCCCHHH-------HHHHHHHHHHHhhc-cCCcEEEEEEee
Q 022717 143 RSIRVDGNDALA-------IYSAVHAAREMAIG-EGRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~-------v~~a~~~a~~~~r~-~~gP~lIe~~t~ 180 (293)
....|. ++++ +...+++|+..+.. ..||+.|++-..
T Consensus 155 ~~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 155 FFTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp CEEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 566664 3332 77788888887776 469999999764
|
| >3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.52 Score=46.76 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=58.6
Q ss_pred cCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhhcCceEEEE-eCCC
Q 022717 75 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRAYGVRSIRV-DGND 151 (293)
Q Consensus 75 ~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D 151 (293)
.|..+++++.++++.. ..++.+.+++..++|+++++...+++.. .++. .+..|++-+. .+|.+.| .-.|
T Consensus 377 ~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~---~iP~l~V~~P~d 448 (616)
T 3mos_A 377 RNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFR---SVPTSTVFYPSD 448 (616)
T ss_dssp GGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHH---TSTTEEEECCCS
T ss_pred cCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhc---CCCCCEEEecCC
Confidence 3433566778888875 3456677888999999998887776443 3322 2333443333 3444443 4458
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 152 ALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 152 ~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+.++..+++.|++ .++|++|..
T Consensus 449 ~~e~~~~l~~a~~----~~gp~~ir~ 470 (616)
T 3mos_A 449 GVATEKAVELAAN----TKGICFIRT 470 (616)
T ss_dssp HHHHHHHHHHHHT----CCSEEEEEC
T ss_pred HHHHHHHHHHHHh----cCCCEEEEE
Confidence 9898888888875 478987744
|
| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.44 Score=47.25 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|+|+|++ .-++++.++++... =.+.+.++.++..++|+++++.+.++.- ..++.. ...|++-+..-=
T Consensus 374 ~~~a~G~A~~-----G~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~--~~~d~~~~~~iP 444 (621)
T 2o1s_A 374 VTFAAGLAIG-----GYKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQ--GAFDLSYLRCIP 444 (621)
T ss_dssp HHHHHHHHHT-----TCEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGC--BCSHHHHTTTST
T ss_pred HHHHHHHHHC-----CCEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccC--chHHHHHHhcCC
Confidence 4456676664 24667777877653 2344557778999999999998777521 233322 223443322222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
|+.++. -.|+.+++..++.|++. .++|++|-..
T Consensus 445 ~l~v~~--P~d~~e~~~~l~~a~~~---~~~Pv~i~~~ 477 (621)
T 2o1s_A 445 EMVIMT--PSDENECRQMLYTGYHY---NDGPSAVRYP 477 (621)
T ss_dssp TCEEEC--CSSHHHHHHHHHHHHHC---CSSCEEEECC
T ss_pred CCEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEeC
Confidence 565554 44899999999999862 3789988553
|
| >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.42 Score=46.54 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccc---cccC---ccCcccHHHH
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST---PISD---QFRSDGAVVK 136 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~---~~~~---~~~~~d~~~~ 136 (293)
-+|.|.|.+. + -.++++..|=|+++ ..-++..|...++|+|+|.-+-...... .... .....+...+
T Consensus 56 ~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~ 128 (563)
T 2vk8_A 56 YAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRM 128 (563)
T ss_dssp HHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHH
T ss_pred HHHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHH
Confidence 4566777664 3 34666667888875 3345777888999999998875543210 0000 0011245667
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++.+--...++. +++++.+.+.+|+..+....||+.|++-..
T Consensus 129 ~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 170 (563)
T 2vk8_A 129 SANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPAN 170 (563)
T ss_dssp HHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEETT
T ss_pred hhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 777776677775 555566666666666655679999998763
|
| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.73 Score=46.12 Aligned_cols=102 Identities=10% Similarity=-0.011 Sum_probs=63.6
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. +.-+++++.+...+. ..++++..++..++|+++++...+++.. .++. .+..|++-+..-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 4566676654 223455555544432 2356688899999999999988887643 3333 233444433322
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-|+.++ .-.|..++..+++.|++. .++|++|-.
T Consensus 486 P~l~V~--~Pad~~E~~~~l~~a~~~---~~~Pv~i~~ 518 (669)
T 2r8o_A 486 PNMSTW--RPCDQVESAVAWKYGVER---QDGPTALIL 518 (669)
T ss_dssp TTCEEE--CCSSHHHHHHHHHHHHHC---SSSCEEEEC
T ss_pred CCCEEE--ecCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 244444 445899999999999862 378999854
|
| >2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.67 Score=46.27 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=63.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. |.-++++..+.=.+. -.++++..++..++|+++++.+.+++.. .++. .+..|++-+..-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 3466776654 223555655532221 2356688899999999999988887653 3333 233444433322
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-|+.++. -.|+.++..+++.|++. .++|++|-.
T Consensus 481 P~l~V~~--Pad~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 481 PNLFVIR--PADAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp TTCEEEC--CSSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCcEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 2554444 45899999999999862 268998865
|
| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.24 Score=49.25 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcc-ccccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~-~~~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|+|+|++ .-++++.++.+.. +-.+.+.++.++..++|+++++.+.++. -..++.. ...|++-+..-=
T Consensus 377 ~~~a~G~A~~-----G~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~--~~~d~a~~r~iP 447 (629)
T 2o1x_A 377 VTTAAGMALQ-----GMRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHN--GVFDLSFLRSIP 447 (629)
T ss_dssp HHHHHHHHHT-----TCEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTC--BCSHHHHTTTST
T ss_pred HHHHHHHHHc-----CCEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccC--ccHHHHHHHccC
Confidence 4456666654 2456666666653 2234445677899999999999877652 1223222 223433222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
|+.++. -.|+.+++..++.|++ .++|++|-..
T Consensus 448 ~l~v~~--P~d~~e~~~~~~~a~~----~~~Pv~i~~~ 479 (629)
T 2o1x_A 448 GVRIGL--PKDAAELRGMLKYAQT----HDGPFAIRYP 479 (629)
T ss_dssp TCEEEC--CSSHHHHHHHHHHHHH----SSSCEEEECC
T ss_pred CcEEEe--cCCHHHHHHHHHHHHh----CCCCEEEEec
Confidence 555554 4589999999999997 3789998653
|
| >1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.24 Score=47.84 Aligned_cols=110 Identities=20% Similarity=0.041 Sum_probs=69.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|+|+|.-+-..........|. ..|...+++.+-
T Consensus 51 a~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~ 123 (528)
T 1q6z_A 51 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLV 123 (528)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSC
T ss_pred HHHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhh
Confidence 34567777654 3445566666778775 2345777888899999998776543221111111 024555555554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...++. +++++...+.+|+..+..+. ||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 124 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 4455554 67777888888888777654 7999999764
|
| >1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.78 Score=45.99 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhcC-CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhh
Q 022717 63 PHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 63 p~A~G~A~a~k~~~-~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a 139 (293)
++|.|+|+ .| .-++++.++...+. ..++++..++..++|+++++...+++.. +++. .+..|++-+
T Consensus 428 ~~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~l--- 495 (675)
T 1itz_A 428 AICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSF--- 495 (675)
T ss_dssp HHHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHH---
T ss_pred HHHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHh---
Confidence 35555553 33 24556666544432 3567788899999999999987777643 3333 233444433
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-.+|.+.| .-.|+.++..+++.|++. .++|++|-.
T Consensus 496 r~iP~l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 496 RAMPNILMLRPADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp HSSSSCEEECCCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 23555543 456899999999999862 378999854
|
| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
|---|
Probab=92.32 E-value=0.42 Score=43.59 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEE-eCcccccchHHHHHHH-HHhhc--------CCCEEEEEEeCCccccccccCccCc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAVT--------EAPVIFICRNNGWAISTPISDQFRS 130 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~-~GDGa~~~G~~~Eal~-~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~ 130 (293)
.+++|.|+|++- -++++.+ ++++.. ..++.+- .++.+ ++|+++++.+.+ +...++. .+.
T Consensus 64 ~~~~a~G~A~~G-----~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th--~s~ 132 (338)
T 1qs0_B 64 IVGTAVGMGAYG-----LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQT--HSQ 132 (338)
T ss_dssp HHHHHHHHHHHT-----CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSS--SSC
T ss_pred HHHHHHHHHhCC-----CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCccc--ccc
Confidence 456677777652 2344434 888863 2334443 35432 599999987665 3333322 223
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.|+.-+..--|+.++.- .|+.+.+..++.|++ .++|++|-..
T Consensus 133 ~d~~~l~~iP~l~V~~P--sd~~e~~~~l~~A~~----~~~Pv~i~~p 174 (338)
T 1qs0_B 133 SPEAMFTQVCGLRTVMP--SNPYDAKGLLIASIE----CDDPVIFLEP 174 (338)
T ss_dssp CCHHHHTTSTTCEEECC--CSHHHHHHHHHHHHH----SSSCEEEEEE
T ss_pred cHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----cCCcEEEEEc
Confidence 35543332236666654 489999999999986 3789998543
|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.34 Score=47.45 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|.|.|.+. ++-.++++..|=|+++ ..-++..|...+.|+|+|.-+-..........| ..|...+++.+--.
T Consensus 64 aAdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Q--e~d~~~~~~~~tk~ 135 (578)
T 3lq1_A 64 FALGLAKAS---KRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNVGAPQ--AMDQLHLYGSHVKD 135 (578)
T ss_dssp HHHHHHHHH---CCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTSSCTT--CCCCTTTTGGGSSE
T ss_pred HHHHHHHhh---CCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCC--CcCHhhHHhhheee
Confidence 566776654 4456677777888886 234577888899999999876443221111111 12445555555445
Q ss_pred EEEEe-CCCHHH----HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 144 SIRVD-GNDALA----IYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 144 ~~~Vd-G~D~~~----v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...|. ..+..+ +..++++|+..++.+ .||+.|++-.
T Consensus 136 ~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 136 FTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred EeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 56653 334322 445777888777765 6999999975
|
| >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.72 Score=44.93 Aligned_cols=109 Identities=16% Similarity=0.034 Sum_probs=68.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cC--cc-CcccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SD--QF-RSDGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~--~~-~~~d~~~ 135 (293)
.-+|.|.|.+. + -.++++..|=|+++ ..-++..|...++|+|+|.-+......... .. .. ...+...
T Consensus 76 ~~~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
T 2vbf_A 76 SYMADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMK 148 (570)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHH
Confidence 34566766553 4 44666667777765 334577888889999999887665332110 00 00 1113456
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.++.+--...++. + +++...+++|+..+..+.||+.|++-..
T Consensus 149 ~~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 149 MHEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred HhhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 6777776777775 3 4566666666666666779999999764
|
| >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.78 Score=46.04 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhhhcCCCc-eEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHh
Q 022717 62 LPHAVGAAYALKMDRKDA-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGR 138 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~-~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~ 138 (293)
+++|.|+|+. |.-+ +++.++.+-+. ..++++..++..++|++|++...+++.. +++. .+..+++-+.
T Consensus 422 vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr- 491 (680)
T 1gpu_A 422 GAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFR- 491 (680)
T ss_dssp HHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHH-
T ss_pred HHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhc-
Confidence 3456666654 3234 45555533322 2356688899999999999988787643 3433 2334444332
Q ss_pred hcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 139 AYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 139 a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+|.++| --.|+.++..+++.|++. .++|++|-.
T Consensus 492 --~iP~l~V~~Pad~~e~~~~l~~A~~~---~~~Pv~i~~ 526 (680)
T 1gpu_A 492 --SLPNIQVWRPADGNEVSAAYKNSLES---KHTPSIIAL 526 (680)
T ss_dssp --TSSSCEEECCCSHHHHHHHHHHHHHC---SSCCEEEEC
T ss_pred --CCCCCEEEecCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 3444443 445899999999999862 378999853
|
| >3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=91.20 E-value=1.1 Score=44.90 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGR 138 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~ 138 (293)
.+++|+|+|+. +.-++++.++.+-+. ...+.+.+++..++|++|+....+++.. .++. .+..|++-+..
T Consensus 415 ~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 485 (663)
T 3kom_A 415 MAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRL 485 (663)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhc
Confidence 34567777764 234556666554432 2356788889999999999988777543 3333 23344443332
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-=|+.++ --.|+.++..+++.|++ ..++|++|-.
T Consensus 486 iPnl~V~--~Pad~~e~~~~l~~A~~---~~~~Pv~ir~ 519 (663)
T 3kom_A 486 IPNLSVW--RPADTIETMIAWKEAVK---SKDTPSVMVL 519 (663)
T ss_dssp STTCEEE--CCCSHHHHHHHHHHHHH---CSSCCEEEEC
T ss_pred CCCcEEE--eeCCHHHHHHHHHHHHH---hCCCCEEEEc
Confidence 2244444 34588899998988885 2588999843
|
| >3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=1.4 Score=43.90 Aligned_cols=101 Identities=14% Similarity=-0.007 Sum_probs=63.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc--cccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~--~~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. +.-++++.++. .|.+ ..++.+.+++..++||+|+....+++. ..++. .+..|++-+..-
T Consensus 395 v~~a~GlA~~----gG~~P~~~~f~--~F~~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~i 465 (632)
T 3l84_A 395 AAINNAFARY----GIFLPFSATFF--IFSE-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRAM 465 (632)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHHS
T ss_pred HHHHHHHHHc----CCCEEEEEecH--HHHH-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhcC
Confidence 4567777765 22345666554 3432 345667788999999999998888754 34433 233454433322
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
=|+.++. -.|+.++..+++.|++ .++|++|-.
T Consensus 466 P~l~V~~--P~d~~e~~~~l~~A~~----~~~Pv~ir~ 497 (632)
T 3l84_A 466 PNFLTFR--PADGVENVKAWQIALN----ADIPSAFVL 497 (632)
T ss_dssp SSCEEEC--CSSHHHHHHHHHHHHH----CSSCEEEEC
T ss_pred CCCEEEe--cCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 2554443 3488999999999986 588998854
|
| >1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 | Back alignment and structure |
|---|
Probab=90.26 E-value=1.7 Score=43.49 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhhc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a~ 140 (293)
++|.|+|+. +.-++++.++..-+. -.++++..++..++|+++++...+++.. +++. .+..+++-+..--
T Consensus 416 ~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~iP 486 (673)
T 1r9j_A 416 AILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAMP 486 (673)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHST
T ss_pred HHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCCC
Confidence 356666654 223455555533332 2345688899999999999987777643 3333 2334444333322
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
|+.++ .-.|+.++..+++.|++. .++|++|-.
T Consensus 487 ~l~V~--~Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 518 (673)
T 1r9j_A 487 NLQVI--RPSDQTETSGAWAVALSS---IHTPTVLCL 518 (673)
T ss_dssp TCEEE--CCSSHHHHHHHHHHHHHC---TTCCEEEEC
T ss_pred CCEEE--eCCCHHHHHHHHHHHHHh---CCCeEEEEE
Confidence 44433 445889999999999862 378999854
|
| >3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=2.3 Score=42.83 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=61.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+.. .-++++.++ ..|.+ .....+..++..++|++|+....+++.. +++. .+..+++-+.
T Consensus 461 v~~AaGlA~~~----G~~Pv~~~f--~~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr-- 529 (711)
T 3uk1_A 461 SAAINGLVLHG----GYKPFGGTF--LTFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLR-- 529 (711)
T ss_dssp HHHHHHHHHHS----SCEEEEEEE--GGGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHH--
T ss_pred HHHHHHHHHcC----CCEEEEEEh--HHHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHh--
Confidence 45677777631 234555554 33443 2345677888999999999988876543 3433 2334443322
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.+|.+.| .--|+.++..+++.|++ .++|++|-
T Consensus 530 -~iPnl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 530 -LIPNLDVWRPADTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp -TSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred -cCCCCEEEecCCHHHHHHHHHHHHh----cCCCEEEE
Confidence 3444442 44588999999999986 58999884
|
| >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 | Back alignment and structure |
|---|
Probab=88.95 E-value=1.2 Score=43.12 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=67.6
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc---ccC---ccCcccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISD---QFRSDGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~---~~~---~~~~~d~~~ 135 (293)
.-+|.|.|.+. + -.++++..|=|.++ ..-++..|...++|+|+|.-+-....... ... .....+...
T Consensus 56 ~~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~ 128 (552)
T 1ovm_A 56 SYAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 128 (552)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHH
Confidence 34577777664 3 34677777888764 23457788889999999988765432110 000 001124556
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.++.+-.....+. + +.+...+.+|+..+....||+.|++-..
T Consensus 129 ~~~~~tk~~~~v~--~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 129 MSEPITVAQAVLT--E-QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred HHHhheeEEEEEc--c-ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 7777777777775 3 4455556666655555569999999764
|
| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=2.2 Score=42.88 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=60.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc--cccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~--~~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. +.-++++..+.-=+. ....++.+++..++||+|++...+++. ..++. .+..+++-+..-
T Consensus 440 v~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~TH--q~ied~a~lr~i 510 (690)
T 3m49_A 440 GAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTH--EPIEQLAALRAM 510 (690)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCcc--CCHHHHHHHhcC
Confidence 4567777765 123445443322221 123357778999999999999888754 34443 233444433222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
=|+.++. -.|+.++..+++.|++. .++|++|-.
T Consensus 511 Pnl~V~~--Pad~~E~~~~l~~Ai~~---~~~Pv~ir~ 543 (690)
T 3m49_A 511 PNVSVIR--PADGNESVAAWRLALES---TNKPTALVL 543 (690)
T ss_dssp TTCEEEC--CSSHHHHHHHHHHHHHC---SSSCEEEEC
T ss_pred CCCEEEe--eCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 2454443 44889999999999862 368999843
|
| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
|---|
Probab=87.94 E-value=2.1 Score=39.08 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHhhhcCCCceEEE-EeCcccccchHHHHHHHH-Hh--------hcCCCEEEEEEeCCccc-cccccCccC
Q 022717 61 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALNF-SA--------VTEAPVIFICRNNGWAI-STPISDQFR 129 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~-~~GDGa~~~G~~~Eal~~-A~--------~~~lpvi~vi~NN~~~~-~~~~~~~~~ 129 (293)
.+++|.|+|++ + -++++. .++|... ..++.+.. ++ ..++|+++++.+ ++.. ..++..+
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~-- 142 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ-- 142 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC--
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh--
Confidence 35566676654 2 344444 3888773 23344443 33 378999999885 4322 2333211
Q ss_pred cccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 130 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 130 ~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
..+ ...+.. |+.++. -.|+.+++..++.|++ .++|++|-..
T Consensus 143 ~~e--a~l~~iP~l~V~~--Psd~~e~~~~l~~a~~----~~~Pv~i~~~ 184 (341)
T 2ozl_B 143 CFA--AWYGHCPGLKVVS--PWNSEDAKGLIKSAIR----DNNPVVVLEN 184 (341)
T ss_dssp CCH--HHHHTSTTCEEEC--CCSHHHHHHHHHHHHH----SSSCEEEEEC
T ss_pred HHH--HHhccCCCCEEEE--eCCHHHHHHHHHHHHh----cCCCEEEEEC
Confidence 112 223332 555554 4589999999999886 4789998654
|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
|---|
Probab=87.39 E-value=2.8 Score=38.72 Aligned_cols=100 Identities=16% Similarity=0.023 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEE-eCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCcc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 131 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~-~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~ 131 (293)
.+++|.|+|++ + -++++.+ ++|...- .+.+-++-++.. ++|+++++.+.+..-..++.. ..
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~~--a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs---~~ 179 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIWL--GADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS---NS 179 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC----C--CHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHHH--HHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccc---cc
Confidence 34556666654 2 3444444 8887631 233323335544 999999998776432222211 12
Q ss_pred cHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 132 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 132 d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+ ..+.+.. |+.++. -.|+.++...++.|++ .++|++|-.
T Consensus 180 ~-~a~l~~iPnl~V~~--Psd~~e~~~ll~~A~~----~~~Pv~i~~ 219 (369)
T 1ik6_A 180 P-EAIFVHTPGLVVVM--PSTPYNAKGLLKAAIR----GDDPVVFLE 219 (369)
T ss_dssp H-HHHHHTCTTCEEEC--CCSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred H-HHHHcCCCCcEEEe--cCCHHHHHHHHHHHHh----CCCCEEEEE
Confidence 2 2333333 555544 4589999999999886 578999853
|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=1.5 Score=42.58 Aligned_cols=107 Identities=14% Similarity=0.013 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++- .-++..|...+.|+|+|.-+-..........| ..|...+++.+--
T Consensus 60 ~~AdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 131 (556)
T 3hww_A 60 HLALGLAKVS---KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFASHPT 131 (556)
T ss_dssp HHHHHHHHHH---CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTTTCSS
T ss_pred HHHHHHHHhh---CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHhhhee
Confidence 3466666554 44566777778888862 34577888899999999876654332111111 1244445555544
Q ss_pred eEEEEeC-C---CHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDG-N---DALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG-~---D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
....+.- . .+..+.+++++|+.. ...||+.|++-.
T Consensus 132 ~~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 132 HSISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp EEEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred EEEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 5555532 1 235588888888831 236899999975
|
| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
|---|
Probab=85.56 E-value=3.1 Score=37.92 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHhhhcCCCceEEE-EeCcccccchHHHHHHH-HHhhc--------CC-CEEEEEEeCCccccccccCccC
Q 022717 61 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALN-FSAVT--------EA-PVIFICRNNGWAISTPISDQFR 129 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~-~~GDGa~~~G~~~Eal~-~A~~~--------~l-pvi~vi~NN~~~~~~~~~~~~~ 129 (293)
.+++|.|+|++ + -++++. .++++.. ..++.+. .++.+ ++ |+++++...+. ...++. .+
T Consensus 79 ~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th--~~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALY--HS 147 (342)
T ss_dssp HHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGG--SS
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcch--hh
Confidence 35566676664 2 344443 4888854 2334343 45543 34 99998876543 233332 22
Q ss_pred cccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 130 SDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 130 ~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..|+.-+ +.. |+.++ .-.|+.+.+..++.|++ .++|++|-.
T Consensus 148 ~~d~~~l-~~iP~l~V~--~Psd~~e~~~~l~~a~~----~~~Pv~i~~ 189 (342)
T 2bfd_B 148 QSPEAFF-AHCPGIKVV--IPRSPFQAKGLLLSCIE----DKNPCIFFE 189 (342)
T ss_dssp CCCHHHH-HTSTTCEEE--CCSSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred HhHHHHH-hcCCCcEEE--eeCCHHHHHHHHHHHHh----cCCcEEEEe
Confidence 3455333 333 55544 44589999999999986 378999844
|
| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
|---|
Probab=85.02 E-value=7.9 Score=34.74 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEE-eCcccccchHHHHHHH-HHhh--------cCCCEEEEEEeCCccccccccCccCc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRS 130 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~-~GDGa~~~G~~~Eal~-~A~~--------~~lpvi~vi~NN~~~~~~~~~~~~~~ 130 (293)
.+++|.|+|++- -++++.+ +++... ..++.+. .++. .++|+++++.. +++...... ...
T Consensus 63 ~v~~a~G~A~~G-----~~p~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~--hs~ 131 (324)
T 1umd_B 63 IVGAALGMAAHG-----LRPVAEIQFADYIF---PGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHH--HSQ 131 (324)
T ss_dssp HHHHHHHHHHHT-----CEEEEECSSGGGCG---GGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGG--SSC
T ss_pred HHHHHHHHHHCC-----CEEEEEeccHhHHH---HHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCc--cch
Confidence 355677777652 2444443 788763 2344443 3444 68899988873 443322221 112
Q ss_pred ccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 131 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 131 ~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+. .+.+.. |+.++. -.|+.+.+..++.|++ .++|++|-.
T Consensus 132 ~~~-a~~~~iP~~~V~~--P~d~~e~~~~l~~a~~----~~~Pv~i~~ 172 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVA--VSTPYDAKGLLKAAIR----DEDPVVFLE 172 (324)
T ss_dssp CCH-HHHHTSTTCEEEE--CCSHHHHHHHHHHHHH----CSSCEEEEE
T ss_pred hHH-HHHhcCCCCEEEE--eCCHHHHHHHHHHHHh----cCCCEEEEe
Confidence 344 333433 555544 4589999999999985 578998843
|
| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
|---|
Probab=84.76 E-value=3.6 Score=37.04 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEE-eCcccccchHHHHHHH-HHhh--------cCCCEEEEEEeCCccccccccCccCc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRS 130 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~-~GDGa~~~G~~~Eal~-~A~~--------~~lpvi~vi~NN~~~~~~~~~~~~~~ 130 (293)
.+++|+|+|++ | -++++.+ ++++.. ..++.+. .++. .++|+++++.. +++..... ....
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~--~hs~ 130 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPE--LHSD 130 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCT--TSSC
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCC--cccc
Confidence 45566676654 2 2344433 777763 2344443 3444 78999988763 44332211 1122
Q ss_pred ccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 131 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 131 ~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+. .+.+.. |+.++ .-.|+.+.+..++.|++ .++|++|-.
T Consensus 131 ~~~-a~~~~iP~l~V~--~Psd~~e~~~~l~~a~~----~~~Pv~i~~ 171 (324)
T 1w85_B 131 SLE-GLVAQQPGLKVV--IPSTPYDAKGLLISAIR----DNDPVIFLE 171 (324)
T ss_dssp CCH-HHHTTSTTCEEE--CCSSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred cHH-HHHccCCCCEEE--eeCCHHHHHHHHHHHHH----cCCCEEEEe
Confidence 333 333332 44444 44589999999999985 578999853
|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
Probab=84.16 E-value=3.8 Score=43.88 Aligned_cols=112 Identities=16% Similarity=0.076 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+.+++|++++ +.++++.+--.++. ...|.|..++-..+|+|+++-+....-. ..+......|+. .++..|
T Consensus 67 ~~aaiGAa~a------GaR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~-glsi~~~hsd~~-~ar~~G 136 (1231)
T 2c42_A 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAH-ALSIFGDHQDIY-AARQTG 136 (1231)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSS-SBCCSCCSHHHH-TTTTSS
T ss_pred HHHHHHHHHc------CChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCC-CCcCCCchhhHH-HHhcCC
Confidence 4567777765 34555554433443 3457775555567898887777654211 111111112221 255567
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
++.+. ..++.+.+..+..|++.+.+..-|+++-...+|. +|.
T Consensus 137 ~~vl~--pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~-sh~ 178 (1231)
T 2c42_A 137 FAMLA--SSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHE 178 (1231)
T ss_dssp CEEEE--CCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTC
T ss_pred cEEEE--CCCHHHHHHHHHHHHHHHHHcCCCEEEEecCccc-ccc
Confidence 75554 4589999999999988777789999998888765 454
|
| >3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.02 E-value=5.5 Score=40.07 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=48.3
Q ss_pred HHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC--CcE
Q 022717 98 ALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPI 173 (293)
Q Consensus 98 al~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~--gP~ 173 (293)
++.+++..++||+|++...+++.. +++. .+..+++-+..-=|+.++. --|+.++..+++.|++. .+ +|+
T Consensus 474 ~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~iPnl~V~~--Pad~~e~~~~l~~Ai~~---~~~~~Pv 546 (700)
T 3rim_A 474 AVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAIPRLSVVR--PADANETAYAWRTILAR---RNGSGPV 546 (700)
T ss_dssp HHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTSTTCEEEC--CSSHHHHHHHHHHHHTT---TTCSSCE
T ss_pred HHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcCCCCEEEe--CCCHHHHHHHHHHHHHc---cCCCCCE
Confidence 477889999999999988877543 4443 2344554333222444443 34888999999998862 34 699
Q ss_pred EEEE
Q 022717 174 LIEA 177 (293)
Q Consensus 174 lIe~ 177 (293)
+|-.
T Consensus 547 ~ir~ 550 (700)
T 3rim_A 547 GLIL 550 (700)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9853
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 293 | ||||
| d2bfda1 | 395 | c.36.1.11 (A:6-400) Branched-chain alpha-keto acid | 3e-58 | |
| d2ozla1 | 361 | c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de | 3e-49 | |
| d1qs0a_ | 407 | c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B | 7e-48 | |
| d1umda_ | 362 | c.36.1.11 (A:) Branched-chain alpha-keto acid dehy | 7e-48 | |
| d1w85a_ | 365 | c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd | 2e-47 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Score = 189 bits (481), Expect = 3e-58
Identities = 135/283 (47%), Positives = 193/283 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 109 REAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVG 168
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 169 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 228
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +T
Sbjct: 229 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHAST 288
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE
Sbjct: 289 SDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 348
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 290
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP +
Sbjct: 349 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 391
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Score = 165 bits (417), Expect = 3e-49
Identities = 77/275 (28%), Positives = 124/275 (45%), Gaps = 5/275 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ +H N++ + + Q+P
Sbjct: 86 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHM--YAKNFYGGNGIVGAQVP 143
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 144 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTS 203
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S R + +RVDG D L + A A PIL+E TYR
Sbjct: 204 VERAAASTD--YYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 261
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 262 GHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 321
Query: 244 QEAEKAEKPPISDLFTDVY-DVSPSNLREQEHSLR 277
Q A +PP+ +L +Y P +R ++
Sbjct: 322 QFATADPEPPLEELGYHIYSSDPPFEVRGANQWIK 356
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Score = 162 bits (411), Expect = 7e-48
Identities = 102/280 (36%), Positives = 143/280 (51%), Gaps = 8/280 (2%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+ R+ +L+ R S+ E Q N+ D KGRQ+PI Y + +FT+S +ATQ
Sbjct: 129 FPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFV 188
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
AVG A A + A + GDG T+E DFH AL F+ V APVI NN WAIST
Sbjct: 189 QAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTF 248
Query: 124 ISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
+ +G G+ S+RVDGND +A+Y+A A E A P LIE +TYR
Sbjct: 249 QAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRA 308
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
G H+TSDD +KYRP D+ + DP+ R ++ + G W+ + + ++ A
Sbjct: 309 GPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAA 367
Query: 243 LQEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 276
+EAE+ P + +F DVY P +LR Q L
Sbjct: 368 QKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Score = 161 bits (408), Expect = 7e-48
Identities = 115/276 (41%), Positives = 162/276 (58%), Gaps = 1/276 (0%)
Query: 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 64
R+ G+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P
Sbjct: 88 PYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPP 147
Query: 65 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 124
A GAA ++K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS
Sbjct: 148 AAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDY 207
Query: 125 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 184
Q S K A+G+ VDG D LA Y V A E A P L+E YR G
Sbjct: 208 RHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGP 267
Query: 185 HTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 244
H+++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+
Sbjct: 268 HSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLK 326
Query: 245 EAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280
EAE+A P +F DV+ P +L QE L+E +
Sbjct: 327 EAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Score = 160 bits (406), Expect = 2e-47
Identities = 102/279 (36%), Positives = 151/279 (54%), Gaps = 11/279 (3%)
Query: 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 64
R+ ++W G + Q F + G Q+P N I Q
Sbjct: 97 PGYRDVPQIIWHGLPL----YQAFLFSRGHFHGNQIPEG-----VNVLPPQIIIGAQYIQ 147
Query: 65 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 124
A G A LKM K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +AISTP+
Sbjct: 148 AAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 207
Query: 125 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 184
Q + K A G+ I+VDG D LA+Y+AV AARE AI P LIE L +R G
Sbjct: 208 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 267
Query: 185 HTTSDD-STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
HT S D T+YR + W +DP+ RFRK++E+ G W+ + E+ + +++I A+
Sbjct: 268 HTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAI 326
Query: 244 QEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKK 282
++A++ K ++DL + +++ P NL+EQ +E K
Sbjct: 327 KKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 293 | |||
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1r9ja2 | 336 | Transketolase (TK), PP module {Leishmania mexicana | 99.91 | |
| d2r8oa2 | 331 | Transketolase (TK), PP module {Escherichia coli [T | 99.91 | |
| d1gpua1 | 335 | Transketolase (TK), PP module {Baker's yeast (Sacc | 99.9 | |
| d1itza1 | 338 | Transketolase (TK), PP module {Maize (Zea mays) [T | 99.87 | |
| d2djia3 | 229 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 99.87 | |
| d2ez9a3 | 228 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 99.82 | |
| d1ybha3 | 208 | Acetohydroxyacid synthase catalytic subunit {Thale | 99.81 | |
| d1q6za3 | 183 | Benzoylformate decarboxylase {Pseudomonas putida [ | 99.81 | |
| d2ihta3 | 198 | Carboxyethylarginine synthase {Streptomyces clavul | 99.8 | |
| d1pvda3 | 196 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 99.77 | |
| d1zpda3 | 204 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 99.77 | |
| d1ozha3 | 192 | Catabolic acetolactate synthase {Klebsiella pneumo | 99.77 | |
| d1t9ba3 | 227 | Acetohydroxyacid synthase catalytic subunit {Baker | 99.76 | |
| d1ovma3 | 196 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 99.72 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 99.71 | |
| d2ji7a3 | 183 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 99.71 | |
| d2c42a2 | 447 | Pyruvate-ferredoxin oxidoreductase, PFOR, domains | 98.51 | |
| d1zpda2 | 186 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 96.72 | |
| d2djia2 | 184 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.68 | |
| d2ji7a2 | 188 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.67 | |
| d1ozha2 | 181 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.56 | |
| d1pvda2 | 180 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 96.32 | |
| d2ez9a2 | 174 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.3 | |
| d1t9ba2 | 175 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.29 | |
| d1ybha2 | 195 | Acetohydroxyacid synthase catalytic subunit {Thale | 96.22 | |
| d2ihta2 | 186 | Carboxyethylarginine synthase {Streptomyces clavul | 96.12 | |
| d1q6za2 | 180 | Benzoylformate decarboxylase {Pseudomonas putida [ | 95.31 | |
| d2c42a1 | 257 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain I | 94.86 | |
| d2r8oa1 | 195 | Transketolase (TK), Pyr module {Escherichia coli [ | 93.07 | |
| d1ovma2 | 178 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 92.7 | |
| d1r9ja1 | 190 | Transketolase (TK), Pyr module {Leishmania mexican | 92.29 | |
| d1gpua2 | 197 | Transketolase (TK), Pyr module {Baker's yeast (Sac | 91.66 | |
| d2ozlb1 | 192 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 90.22 | |
| d1itza2 | 192 | Transketolase (TK), Pyr module {Maize (Zea mays) [ | 87.52 | |
| d1ik6a1 | 191 | E1-beta subunit of pyruvate dehydrogenase, Pyr mod | 86.98 | |
| d1qs0b1 | 204 | 2-oxoisovalerate dehydrogenase (E1B), Pyr module { | 85.83 | |
| d2bfdb1 | 203 | Branched-chain alpha-keto acid dehydrogenase, Pyr | 82.4 | |
| d1w85b1 | 192 | Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d | 80.59 |
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-76 Score=555.36 Aligned_cols=290 Identities=47% Similarity=0.909 Sum_probs=263.2
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
|+||+||+|+++|++|++++++|++++|+.+++++|+++++|+.+++.++++.++++|+++|+|+|+|+|.|+.+.++++
T Consensus 103 ~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~ 182 (395)
T d2bfda1 103 LVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVV 182 (395)
T ss_dssp EEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCE
T ss_pred eeccccchhHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhhcCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.|||+||+|++|+|||||||+||+|+++|+...+....++++++++||+++++|||+|+.+|++++++
T Consensus 183 v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~ 262 (395)
T d2bfda1 183 ICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKE 262 (395)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHH
T ss_pred ccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCC-cHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQD-PVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~d-Pi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
|++++|+++||+|||+.|||++||+.+||+..||+++|++.|+ ++| ||.+++++|+++|++|++++++|+++++++|+
T Consensus 263 A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~-k~DdPi~~~~~~Li~~g~~s~ee~~~i~~e~~~eV~ 341 (395)
T d2bfda1 263 ARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWD-KQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVM 341 (395)
T ss_dssp HHHHHHHHTCCEEEEEECCCCC--CC--------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCCceEEEEeeecCCCCCCcCCcccccCHHHHHHHH-hcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 465 99999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 292 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 292 (293)
+|+++|+++|.|+++++|+|||++.|+++++|++++++.++++|++|+++.|
T Consensus 342 ~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~ 393 (395)
T d2bfda1 342 EAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 393 (395)
T ss_dssp HHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHHhCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHhCcccCChhhh
Confidence 9999999999999999999999999999999999999999999999987654
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-73 Score=535.47 Aligned_cols=277 Identities=42% Similarity=0.670 Sum_probs=271.1
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+++|+++++|+.+++.++++.++++|+++|+|+|+|+|.|+++.+.++
T Consensus 85 ~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~~~v~ 164 (362)
T d1umda_ 85 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 164 (362)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred eEEeccccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.|||+||+|+.|+||+||||+||+|+++++.+.+.+..++.+++.+||+++++|||+|+.+|++++++
T Consensus 165 v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~ 244 (362)
T d1umda_ 165 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 244 (362)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred eeeccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|+++||+|||+.|||+.||+++||+..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++
T Consensus 245 Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~-~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~ 323 (362)
T d1umda_ 245 AVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 323 (362)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcccccccCCCccccchhhcchhhhHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHH
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 279 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~ 279 (293)
++++|+++|.|+++++|+|||+++|+.+.+|++++.+.
T Consensus 324 a~~~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~ 361 (362)
T d1umda_ 324 GLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 361 (362)
T ss_dssp HHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHhcccCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999875
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=3.4e-73 Score=538.62 Aligned_cols=274 Identities=38% Similarity=0.580 Sum_probs=264.0
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
|+||+||+||++|++|+++.++|++++|+.+|+++|+++++|+..+..++++.++++|+++|.|+|+|+|.|+++.+.++
T Consensus 127 ~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~ 206 (407)
T d1qs0a_ 127 MCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIA 206 (407)
T ss_dssp EEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhccCccee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 160 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~ 160 (293)
+|++|||++++|.|||+||+|+.|+|||||||+||+|+|+|+...+.. ..++++++++||+++++|||||+.+|+++++
T Consensus 207 v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~ 286 (407)
T d1qs0a_ 207 SAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASR 286 (407)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765543 5678999999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
+|++++|+++||+|||+.|||++|||++||+..||+++|++.|+ ++|||.+++++|++.|+||++++++|+++++++|+
T Consensus 287 ~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~YR~~~E~~~w~-~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~ 365 (407)
T d1qs0a_ 287 WAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVI 365 (407)
T ss_dssp HHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEEeeecCCCCCccccccccCCHHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 69999999999999999999999999999999999
Q ss_pred HHHHHHHh------CCCCCcccccccccCCCCccHHHHHHHH
Q 022717 241 HALQEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 276 (293)
Q Consensus 241 ~a~~~a~~------~~~p~~~~~~~~v~~~~~~~~~~~~~~~ 276 (293)
+|+++|++ +|.|+++++|+|||+++||++++|+++|
T Consensus 366 ~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l~eQ~~el 407 (407)
T d1qs0a_ 366 AAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407 (407)
T ss_dssp HHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHTC
T ss_pred HHHHHHHHhhhcccCCCcCHHHHHhhhccCCCHHHHHHHHhC
Confidence 99999986 5789999999999999999999998764
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.6e-68 Score=501.48 Aligned_cols=269 Identities=36% Similarity=0.584 Sum_probs=249.4
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+..+.+.| +..++++.++++|+++|+|+|+|+|.|+++.++++
T Consensus 94 ~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~---------~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~~~v~ 164 (365)
T d1w85a_ 94 FILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIP---------EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVA 164 (365)
T ss_dssp EEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCC---------TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCE
T ss_pred EeeecccchheeeecCCCHHHHHHhhCCCCCccCCC---------CCceeeccccccCccccchhhHHhhhhhcccCCce
Confidence 689999999999999999999999998765432222 34567888999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.|||+||+|+.|+||+||||+||+|+++++.+.+....++.+++.+||+++++|||+|+.+|++++++
T Consensus 165 v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~ 244 (365)
T d1w85a_ 165 ITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKA 244 (365)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHH
T ss_pred eeeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCC-CCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDD-STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd-~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
|++++|+++||+|||++|||+.|||++|| +..||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|+
T Consensus 245 A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~-~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~eV~ 323 (365)
T d1w85a_ 245 ARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 323 (365)
T ss_dssp HHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccEEEEeecccccccCCcCCcccccCChHHHHHHH-hCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998754 78999999999998 69999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHH
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 280 (293)
+|+++|+++|.|+++++|+|||++.||++++|++++++..
T Consensus 324 ~A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~ 363 (365)
T d1w85a_ 324 EAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKE 363 (365)
T ss_dssp HHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHhhhccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998854
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-67 Score=494.99 Aligned_cols=262 Identities=29% Similarity=0.461 Sum_probs=248.7
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+++++|+++++|+.+ .++++.++++|+++|+|+|+|+|.|+++.+.+|
T Consensus 84 ~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~--~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~ 161 (361)
T d2ozla1 84 HLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVC 161 (361)
T ss_dssp EEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCE
T ss_pred EecccccchheeeeecccchhhhhhccCCcccccccccccccccc--ccccCccccccccchhHHHHHHHhhhccCCCeE
Confidence 689999999999999999999999999999999999999999875 478899999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.|||+||+|+.|+||+||||+||+|+++|+...+....++.. +++|+++++|||+|+.+|++++++
T Consensus 162 ~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~--~~~~~~~~~vdGnD~~av~~a~~~ 239 (361)
T d2ozla1 162 LTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRF 239 (361)
T ss_dssp EEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEecCCCccCcchhhhhhhhhhccCceEEEEEeCCcccCCCchhccccccccc--cccccceEEeccCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999887766666654 467899999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|+++||+|||+.|||++||+++|++..||+++|++.|++++|||.+++++|+++|++|++++++|+++++++|++
T Consensus 240 A~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~ 319 (361)
T d2ozla1 240 AAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIED 319 (361)
T ss_dssp HHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCEEEEEeeecCCCCcccccccccCCHHHHHhhhhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999865579999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCc
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPS 267 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~ 267 (293)
|+++|+++|.|+++++|+|||++.|+
T Consensus 320 A~~~A~~sp~P~~~~l~~~VYa~~~p 345 (361)
T d2ozla1 320 AAQFATADPEPPLEELGYHIYSSDPP 345 (361)
T ss_dssp HHHHHHHSCCCCGGGTTCSSSSSCCC
T ss_pred HHHHHHhCCCcCHHHHHhcccCCCCh
Confidence 99999999999999999999988654
|
| >d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=99.91 E-value=3.6e-23 Score=190.67 Aligned_cols=165 Identities=21% Similarity=0.195 Sum_probs=131.1
Q ss_pred CCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhh----------cCCCceEEEEeCcccccchHHHHHHHHHhh
Q 022717 36 KGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFSAV 104 (293)
Q Consensus 36 ~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~----------~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~ 104 (293)
.|+..+.|+.....+.+. .+|+||+|++.|+|+|+|.|+ ..-+..|+|++|||++++|.+|||+++|+.
T Consensus 93 ~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~ 172 (336)
T d1r9ja2 93 DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGH 172 (336)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHH
Confidence 366678888765556665 479999999999999999875 223678999999999999999999999999
Q ss_pred cCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 105 TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 105 ~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG--~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++| ++|+|++||+.+++.++... ...++.+++++|||.++.||| +|...+..++..+.. ..++|++|.++|.+
T Consensus 173 ~~L~nLi~i~D~N~~~idg~~~~~-~~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~~~~~a~~---~~~kP~~Ii~kTii 248 (336)
T d1r9ja2 173 LALEKLIVIYDSNYISIDGSTSLS-FTEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTI 248 (336)
T ss_dssp HTCTTEEEEEEECSBCSSSBGGGT-CCCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred hhcCCEEEEEeccccccccccccc-chhHHHHHHHHhccceEEEecCchHHHHHHHHhhhhhh---ccCCCccceEEEEE
Confidence 999 59999999999988765443 457899999999999999987 455566666555543 35689999999999
Q ss_pred CCCCCCCCCCC---CCCChHHHHHHH
Q 022717 182 VGHHTTSDDST---KYRPVDEIEWWR 204 (293)
Q Consensus 182 ~~gHs~~Dd~~---~Yr~~~e~~~~~ 204 (293)
..|++..+.+. ..-+.+|++.++
T Consensus 249 G~G~~~e~~~~~Hg~pl~~eEi~~~k 274 (336)
T d1r9ja2 249 GFGSSKQGTEKVHGAPLGEEDIANIK 274 (336)
T ss_dssp TTTSTTTTSGGGTSSCCCHHHHHHHH
T ss_pred eecccccCCcceeecCCCHHHHHHHH
Confidence 99987654422 123557777665
|
| >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=8.1e-24 Score=194.62 Aligned_cols=149 Identities=26% Similarity=0.311 Sum_probs=128.3
Q ss_pred CCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcC----------CCceEEEEeCcccccchHHHHHHHHHhh
Q 022717 36 KGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAV 104 (293)
Q Consensus 36 ~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~ 104 (293)
.|+-+++|+.....+.+. .+|+||++++.|+|+|+|.|+.+ .+..|+|++|||++++|++|||+++|+.
T Consensus 92 ~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~ 171 (331)
T d2r8oa2 92 LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT 171 (331)
T ss_dssp TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcch
Confidence 356678888765555555 58999999999999999998743 3678999999999999999999999999
Q ss_pred cCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 105 TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 105 ~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
++| ++|+|++||++++.+++.... ..++.+++++|||.++. +||||..++.+|+.+|.+ ..++|++|.+.|...
T Consensus 172 ~kL~nLi~i~D~N~~~~~g~~~~~~-~~~~~~rf~afGw~vi~~~dghd~~~i~~A~~~a~~---~~~kP~~Ii~~TikG 247 (331)
T d2r8oa2 172 LKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIG 247 (331)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred hcccceeeHHhhhhhcccccccccc-chhHHHHHHHcCCeeecccccchHHHHHHHHHHHHh---hcCCCccceeeeeee
Confidence 999 699999999999988876654 57899999999999985 799999999998888764 367899999999999
Q ss_pred CCCCCC
Q 022717 183 GHHTTS 188 (293)
Q Consensus 183 ~gHs~~ 188 (293)
.|.+..
T Consensus 248 kG~~~~ 253 (331)
T d2r8oa2 248 FGSPNK 253 (331)
T ss_dssp TTCTTT
T ss_pred cCCccc
Confidence 998643
|
| >d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.4e-23 Score=190.71 Aligned_cols=149 Identities=22% Similarity=0.248 Sum_probs=122.5
Q ss_pred CCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhh----------cCCCceEEEEeCcccccchHHHHHHHHHhh
Q 022717 36 KGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFSAV 104 (293)
Q Consensus 36 ~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~----------~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~ 104 (293)
.|+.+++|+... .+.+. ++|+||++++.|+|+|+|.|+ ...+..|+|++|||++++|..|||+.+|+.
T Consensus 94 ~gs~~~ghp~~~-~pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~ 172 (335)
T d1gpua1 94 LGSRTPGHPEFE-LPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGH 172 (335)
T ss_dssp TTCSCCSSCCTT-STTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCC-CCCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhh
Confidence 366678898754 45555 579999999999999999985 334788999999999999999999999999
Q ss_pred cCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC--CHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 105 TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--DALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 105 ~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~--D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++| ++|+|+++|+++++.+++... ..++.+++++|||.++.|||+ |...+..++.++.. ..++|++|.+.|.+
T Consensus 173 ~~L~NLi~i~D~N~~~~dg~~~~~~-~~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~~~~~~~---~~~KPt~Iia~Tik 248 (335)
T d1gpua1 173 LKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTI 248 (335)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCT
T ss_pred hccCCEEEEEecccccccccccccc-cCCHHHHHHhCCCcEEEEcCCchhHHHHHHHHhhhhc---ccCCCcceEEeecc
Confidence 999 699999999999988776554 468999999999999999754 56666666555543 35789999999999
Q ss_pred CCCCCCCC
Q 022717 182 VGHHTTSD 189 (293)
Q Consensus 182 ~~gHs~~D 189 (293)
..|....+
T Consensus 249 GkGs~~e~ 256 (335)
T d1gpua1 249 GYGSLHAG 256 (335)
T ss_dssp TTTSTTTT
T ss_pred CCcCcccC
Confidence 98854433
|
| >d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Transketolase (TK), PP module species: Maize (Zea mays) [TaxId: 4577]
Probab=99.87 E-value=1.2e-21 Score=180.48 Aligned_cols=148 Identities=20% Similarity=0.156 Sum_probs=124.3
Q ss_pred CCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhc----------CCCceEEEEeCcccccchHHHHHHHHHhh
Q 022717 36 KGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMD----------RKDACAVTYFGDGGTSEGDFHAALNFSAV 104 (293)
Q Consensus 36 ~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~----------~~~~~vv~~~GDGa~~~G~~~Eal~~A~~ 104 (293)
.|+.++.|+.....+.+. .+|+||++++.|+|+|+|.|+. ..+.+|+|++|||++++|.+|||+++|+.
T Consensus 97 ~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~ 176 (338)
T d1itza1 97 WGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGH 176 (338)
T ss_dssp TTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHH
T ss_pred cCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhh
Confidence 366677888765566565 5899999999999999998853 24678999999999999999999999999
Q ss_pred cCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC--CHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 105 TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--DALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 105 ~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~--D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++| ++|+|+++|+++++.++.. ....++.++.++|||.++.|+++ |.+++..+++.|.. ..++|++|.+.|..
T Consensus 177 ~~L~NLi~i~D~N~~~~dg~~~~-~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~~a~~~a~~---~~~kPt~Iia~Tik 252 (338)
T d1itza1 177 WGLGKLIAFYDDNHISIDGDTEI-AFTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTI 252 (338)
T ss_dssp TTCTTEEEEEEECSEETTEEGGG-TCCSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred hhccceeeeehhhcccccccccc-ccCCCHHHHHHhcCCeEEEeeCCchhHHHHHHHHHHHHH---ccCCCceeEeecCc
Confidence 999 6999999999999876654 34568999999999999998553 67888888887764 35789999999999
Q ss_pred CCCCCC
Q 022717 182 VGHHTT 187 (293)
Q Consensus 182 ~~gHs~ 187 (293)
..|-+.
T Consensus 253 GkG~~~ 258 (338)
T d1itza1 253 GFGSPN 258 (338)
T ss_dssp TTTCTT
T ss_pred ccCcCc
Confidence 888764
|
| >d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=99.87 E-value=1e-21 Score=171.87 Aligned_cols=194 Identities=19% Similarity=0.228 Sum_probs=130.3
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC----cc-ccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM----PI-HYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~----~~-h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+.+++..+....+.. +.+.|. .. ++.. ++.+++.+ .++||+++|.|+|+++|. +++.|+|++|
T Consensus 3 l~~~~v~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a~----p~~~vv~i~G 78 (229)
T d2djia3 3 LQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWNIIG 78 (229)
T ss_dssp CCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEE
T ss_pred CCHHHHHHHHHhhCCCCeEEEEcCcHhHHHHHHHcccCCCCeEEecCCcccccccchhhhhhhhhc----cccccccccc
Confidence 56788888776655542 223331 11 2222 23445543 589999999999999986 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------cCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|+++ ..+|.+|+++++|+++ |++|++|++.... .......||.++|++||+++++|+ +++++.
T Consensus 79 DGsf~m~--~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~ 154 (229)
T d2djia3 79 DGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMD 154 (229)
T ss_dssp HHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHHCSCCCSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHH
T ss_pred ccccccc--cchhhhhhcccCCceEEEeCCchhhhhhHHHHhhcCCCCcCcCCCCChhhhhhccCccEEEEe--cHHHhH
Confidence 9999754 3459999999999555 5555557643211 122356799999999999999998 788999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCC---CCCCCCCCCCCCChHHHHHHHh---CCCcHHHHHHHHHHCCC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVG---HHTTSDDSTKYRPVDEIEWWRT---TQDPVTRFRKWIESNGW 222 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~---gHs~~Dd~~~Yr~~~e~~~~~~---~~dPi~~~~~~L~~~g~ 222 (293)
+++++|++. ++.++|+||||++.+.. ++....++..+ ++.+++...+ ..| +..++++|.+.|+
T Consensus 155 ~al~~A~~~-~~~~~p~lIev~v~~~~~~p~~~~~~~~~~~-~~~~~~~~~e~~~~~~-~~p~~~~le~~g~ 223 (229)
T d2djia3 155 RVMAEAVAA-NKAGHTVVIDCKITQDRPIPVETLKLDSKLY-SEDEIKAYKERYEAAN-LVPFREYLEAEGL 223 (229)
T ss_dssp HHHHHHHHH-HHTTCCEEEEEECCSCCCCCTTSCTTCTTTS-CHHHHHHHHHHTTCTT-CCCHHHHHHHTTC
T ss_pred HHHHHHHHh-cCCCCeEEEEEEeCCCCCCCccccccCcccc-CHHHHHHHHHhccccc-CCchHHHHHHcCc
Confidence 999999874 44578999999998753 22222234433 4444443211 222 2335788888875
|
| >d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.82 E-value=2.9e-20 Score=162.48 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=111.1
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.|..++.++....+. .+.+.|. ..++.. ++.+++.. .|+||+++|.|+|+++|. +++.|||++|
T Consensus 6 i~p~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~----p~~~Vv~i~G 81 (228)
T d2ez9a3 6 LQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNY----PERQVFNLAG 81 (228)
T ss_dssp CCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEE
T ss_pred cCHHHHHHHHHhhCCCCeEEEEcCcHHHHHHHHHccCCCCceeeeecccccccccchhhhhhhhhh----ccceeEeecC
Confidence 6778888877655443 1223321 112322 23455543 579999999999999986 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEE-EEeCCccccccc----------cCccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPI----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~----------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. ..+|.+|+++++|+++| ++|++|++.... ...+...||.++|++||+++++|+ ++.++
T Consensus 82 DG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~~~~~~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el 157 (228)
T d2ez9a3 82 DGGASMT--MQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQL 157 (228)
T ss_dssp HHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGH
T ss_pred Ccccccc--chhhhhhccccCceEEEEeccccchhhhhhhhhcccCCcccccccCccHHhhccccccceEEeC--CHHHH
Confidence 9999753 34599999999996555 555557543211 112346799999999999999997 67788
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
..++++|.. .+.++|+||||.+.+..
T Consensus 158 ~~al~~a~a--l~~~~p~lIev~vd~d~ 183 (228)
T d2ez9a3 158 PDVFEQAKA--IAQHEPVLIDAVITGDR 183 (228)
T ss_dssp HHHHHHHHH--HTTTSCEEEEEECCCCC
T ss_pred HHHHHHHHH--HcCCCeEEEEEEECCCC
Confidence 888887643 24689999999998754
|
| >d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.81 E-value=4.1e-20 Score=159.30 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=109.4
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.|+.++.++....+. .+.+.|. ..|+.. ++..++.. .++||+++|.|+|+++|. ++++|||++|
T Consensus 3 i~P~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A~----p~~~Vi~i~G 78 (208)
T d1ybha3 3 IPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDG 78 (208)
T ss_dssp CCHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEEEEE
T ss_pred cCHHHHHHHHHhhCCcCeEEEEcCcHHHHHHHHhcccCCCceeccccccccchhhhhhHHHHHhcC----CCCcEEEEcc
Confidence 5677777766544332 1223221 113322 23444443 579999999999999886 7899999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEE-EEeCCccccccc------------------cCccCcccHHHHHhhcCceEEEE
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPI------------------SDQFRSDGAVVKGRAYGVRSIRV 147 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~------------------~~~~~~~d~~~~a~a~G~~~~~V 147 (293)
||+|++. ..| |.||+++++|+++| ++|++|++.... ......+|+.++|++||+++++|
T Consensus 79 DGsf~m~-~~E-l~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v 156 (208)
T d1ybha3 79 DGSFIMN-VQE-LATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARV 156 (208)
T ss_dssp HHHHHHT-TTH-HHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEE
T ss_pred CCchhhh-hhh-HHHHHHhCCCEEEEEEeccccccceehhhhcccccccccccccccccCCCCCCHHHhhccCCceEEEc
Confidence 9999753 344 99999999996554 555557553211 11123468999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 148 DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 148 dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 157 ~--~~~el~~al~~a~~----~~~p~lIeV~id~~ 185 (208)
T d1ybha3 157 T--KKADLREAIQTMLD----TPGPYLLDVICPHQ 185 (208)
T ss_dssp C--BHHHHHHHHHHHHH----SSSCEEEEEECCTT
T ss_pred C--CHHHHHHHHHHHHh----CCCCEEEEEEECCC
Confidence 8 89999999999986 68999999999764
|
| >d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=3.3e-20 Score=156.81 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=107.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----cccCCCC-CCc-ccccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHYGSNK-HNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~~~~-~~~-~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.|..++.++....+. ...+.|.. .++.... ..+ ....|+||+++|.|+|+++|. ++++|+|++||
T Consensus 12 i~p~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la~----p~~~vv~i~GD 87 (183)
T d1q6za3 12 LHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAE----PERQVIAVIGD 87 (183)
T ss_dssp BCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHC----TTSCEEEEEEH
T ss_pred CCHHHHHHHHHHhCCCCcEEEEcCCchHHHHHHHHhhccccccccccCCCcccchhHHHhhhhhc----cccceEEeccc
Confidence 6677787777654443 11222211 1222222 222 334678999999999999886 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc----------cCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~----------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|++++. . .+|.+|+++++|++ +|++||+|++.... .......|+.++|++||+++++|+ +++++.
T Consensus 88 G~f~~~-~-~el~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~ 163 (183)
T d1q6za3 88 GSANYS-I-SALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLK 163 (183)
T ss_dssp HHHTTT-G-GGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHH
T ss_pred cccccc-c-HHHHHHHHhCCCEEEEEEeccccchhhhhhhcccccCcccccCCCccHHHHHHHcCCEEEEEC--CHHHHH
Confidence 999754 3 34999999999955 56666667753211 112345689999999999999997 899999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEe
Q 022717 157 SAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
+++++|++ .++|+|||++|
T Consensus 164 ~al~~a~~----~~gp~lieV~T 182 (183)
T d1q6za3 164 GSLQEALS----AKGPVLIEVST 182 (183)
T ss_dssp HHHHHHHT----CSSCEEEEEEB
T ss_pred HHHHHHHh----CCCcEEEEEEe
Confidence 99988875 68999999998
|
| >d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.80 E-value=4.9e-20 Score=157.68 Aligned_cols=123 Identities=24% Similarity=0.336 Sum_probs=96.3
Q ss_pred CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccc
Q 022717 47 NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTP 123 (293)
Q Consensus 47 ~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~ 123 (293)
.+.+++.. .++||+++|.|+|+++|. +++.|||++|||++++. ..+|.+++++++|+++ |++||+|++...
T Consensus 51 ~p~~~~~~~~~g~mG~~lp~aiGa~~a~----p~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~~~g~i~~ 124 (198)
T d2ihta3 51 QPFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL 124 (198)
T ss_dssp STTSEECCSSSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCCeEEecCCcccchhHHHHHHHHhhhh----cccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhccccceEee
Confidence 34566654 479999999999999886 78899999999999753 3459999999999655 555555654311
Q ss_pred c-----------cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 124 I-----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 124 ~-----------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. .......||.++|++||+++++|+ +++++.+++++|++ .++|+|||++|.+
T Consensus 125 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~vd~ 187 (198)
T d2ihta3 125 YQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 187 (198)
T ss_dssp HHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred eeccccccccccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCC
Confidence 1 112345799999999999999997 89999998888875 6899999999854
|
| >d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=3e-19 Score=152.33 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=112.4
Q ss_pred CCCHHHHHHHhhcCCCCC---CCCCCCc----c-ccCCCCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 17 GFSMQEFANQCFGNKADY---GKGRQMP----I-HYGSNKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~~---~~G~~~~----~-h~~~~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
-+.++.++.++....... ..+.|.+ . +...+...++. ..++||+++|.|+|+|+|.|...++++|||++|
T Consensus 4 Pl~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv~i~G 83 (196)
T d1pvda3 4 PLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIG 83 (196)
T ss_dssp BCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CcCHHHHHHHHHhhCCCCCEEEECCcHhHHHHHHhhccCCCEEEccCCcCcccccccchhHHHHHHHhcCCCCceeeccC
Confidence 367888888876655431 1222211 1 11212233343 258999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccC------ccCcccHHHHHhhcCce---EEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD------QFRSDGAVVKGRAYGVR---SIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~------~~~~~d~~~~a~a~G~~---~~~VdG~D~~~v~ 156 (293)
||+|++. ..+|.+|+++++| +++|++||+|++...... .....|+.++|++||++ +.+|+ ++.++.
T Consensus 84 DGsf~m~--~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~ 159 (196)
T d1pvda3 84 DGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWD 159 (196)
T ss_dssp HHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHTTSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHH
T ss_pred ccccccc--cccccccccccccceEEEEeCCccceeEeeccCccccccCCCCCHHHHHHHhCCCCceEEEec--CHHHHH
Confidence 9999753 3459999999998 666777777876432211 12356899999999855 45676 888998
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++++++. ..+.++|+|||+++.|
T Consensus 160 ~al~~~~--~~~~~~~~lIeV~i~~ 182 (196)
T d1pvda3 160 KLTQDKS--FNDNSKIRMIEIMLPV 182 (196)
T ss_dssp HHHTCTT--TTSCSSEEEEEEECCT
T ss_pred HHHHHHH--HhCCCCcEEEEEECCC
Confidence 8887653 2346789999999864
|
| >d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=99.77 E-value=1.1e-18 Score=149.77 Aligned_cols=153 Identities=18% Similarity=0.134 Sum_probs=106.2
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC----ccc-cCCCCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM----PIH-YGSNKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~----~~h-~~~~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++.+++.++....+.. ..+.|- ..+ ...+..+++. ..|+||+++|.|+|+++|. +++.|+|++||
T Consensus 3 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la~----p~~~vv~i~GD 78 (204)
T d1zpda3 3 LVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNILMVGD 78 (204)
T ss_dssp CCHHHHHHHHHHTCCTTEEEEECSSHHHHHHHTCCCCTTCEEEECTTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEH
T ss_pred CCHHHHHHHHHhhCCCCCEEEECchHhHHHHHHhCCCCCCeEEcCCCCcccchhhHHHHHHHHhC----CCCceeccccc
Confidence 46677777766555431 122221 111 1223334443 3589999999999999986 78999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCE-EEEEEeCCccccccccCc----cCcccHHHHHhh---------cCceEEEEeCCCHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISDQ----FRSDGAVVKGRA---------YGVRSIRVDGNDAL 153 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~~~----~~~~d~~~~a~a---------~G~~~~~VdG~D~~ 153 (293)
|+|++ ...+|.+|+++++|+ ++|++|++|++....++. ....|+.+++++ +|+++++|+ ++.
T Consensus 79 Gsf~m--~~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~ 154 (204)
T d1zpda3 79 GSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGG 154 (204)
T ss_dssp HHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHH
T ss_pred cceee--eecccchhhhcccccceEEEecccccccceeccccccccchhhhhhhhhhcCcchhhhccCccEEEec--CHH
Confidence 99985 345699999999995 556666678765333221 234577666554 588999997 899
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 154 AIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 154 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++.+++++|+. +.++|+|||+.+.|
T Consensus 155 el~~al~~al~---~~~gp~lieV~vd~ 179 (204)
T d1zpda3 155 ELAEAIKVALA---NTDGPTLIECFIGR 179 (204)
T ss_dssp HHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred HHHHHHHHHHH---cCCCcEEEEEEECc
Confidence 99999998864 36899999998854
|
| >d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.77 E-value=4.8e-19 Score=150.70 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=109.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.|..++.++....+. ...+.|. ..|+.. ++.+++.. .|.||+++|.|+|+++|. +++.|++++|
T Consensus 5 i~P~~v~~~L~~~l~~d~ii~~d~G~~~~~~~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vi~i~G 80 (192)
T d1ozha3 5 LHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSG 80 (192)
T ss_dssp BCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHS----TTSEEEEEEE
T ss_pred cCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHhcccCCCceeecccccccccccccchhHHHhhc----ccccceeecc
Confidence 5677777776654433 1222221 112322 23344443 579999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCC-EEEEEEeCCcccccccc---------CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPIS---------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~---------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|++. ..+|.+++++++| +++|++||+|++....+ ......|+.++|++||+.+++|+ +++++.
T Consensus 81 DG~f~~~--~~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~ 156 (192)
T d1ozha3 81 DGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALE 156 (192)
T ss_dssp HHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHH
T ss_pred cccccch--hhhHHHHhhhcCceeEEEEcCCCccccccccccccCccccCcCCCCCHHHHHHHhccccEEeC--CHHHHH
Confidence 9999753 3459999999999 55566666787653221 12335689999999999999997 778899
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+++++|++ .++|+|||+.|.+
T Consensus 157 ~al~~a~~----~~gp~lIeV~vd~ 177 (192)
T d1ozha3 157 PTLRAAMD----VDGPAVVAIPVDY 177 (192)
T ss_dssp HHHHHHHH----SSSCEEEEEEBCC
T ss_pred HHHHHHHH----cCCcEEEEEEeCC
Confidence 98888875 6899999999854
|
| >d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.1e-18 Score=152.13 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=97.8
Q ss_pred CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc
Q 022717 48 KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI 124 (293)
Q Consensus 48 ~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~ 124 (293)
+.+++.. .++||+++|.|+|+++|. +++.|||++|||+|++. .. +|.+|+++++|++ +|++|++|+.....
T Consensus 53 p~~~i~~~~~g~mG~~~~aaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~-EL~Ta~r~~l~i~iiV~nN~~~g~~~~~ 126 (227)
T d1t9ba3 53 PHTFITSGGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT-LT-ELSSAVQAGTPVKILILNNEEQGMVTQW 126 (227)
T ss_dssp TTCEECCCSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-GG-GHHHHHHHTCCCEEEEEECSSCHHHHHH
T ss_pred CceEeeecccccchhhHHHHHHHHhcC----CCCeEEEeCCCcccccc-hH-HHHHHhhcCCceEEEEEecccccchhHH
Confidence 3455543 689999999999999996 78899999999999754 34 4999999999955 55555567543211
Q ss_pred ----------cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 125 ----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 125 ----------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
......+||.++|++||+++++|. +.+++..++++|++ .++|+|||+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~~ 188 (227)
T d1t9ba3 127 QSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKK 188 (227)
T ss_dssp HHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSS
T ss_pred HhhhhccccccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
Confidence 112345799999999999999997 89999999999886 68999999999774
|
| >d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=99.72 E-value=3.1e-18 Score=146.08 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=89.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCE-EEEEEeCCccccccccC------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISD------Q 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~~------~ 127 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|.++++|+ ++|++|++|++....+. .
T Consensus 52 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~~~ 125 (196)
T d1ovma3 52 WGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 125 (196)
T ss_dssp TCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGC
T ss_pred CccccccchhhHHHHHhh----hccceecccccccceee--cccccccccccccceEEEEecCccccchhhhcccccccc
Confidence 579999999999999986 68899999999999864 35699999999995 55556667876432211 1
Q ss_pred cCcccHHHHHhhcCc----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 128 FRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 128 ~~~~d~~~~a~a~G~----~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
....|+.+++++||+ ++++|+ +++++.++++++++ .++|+||||++.|
T Consensus 126 ~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 177 (196)
T d1ovma3 126 IALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH----HERLSLIEVMLPK 177 (196)
T ss_dssp CCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT----CSSEEEEEEECCT
T ss_pred ccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHHH----CCCcEEEEEEeCh
Confidence 234578888889886 677787 78888888877764 7899999999854
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=6.9e-17 Score=152.35 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=106.6
Q ss_pred ccccccCccHHHHHHHHHhhh-------cCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCCcccccccc
Q 022717 54 VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPIS 125 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~ 125 (293)
.++++|.+.+.++|.+.+.+. .+.+..|+|++|||++++|++|||+++|+.++| ++|+|+++|+++++.++.
T Consensus 135 ~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~ 214 (415)
T d2ieaa2 135 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVT 214 (415)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSC
T ss_pred CCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccChh
Confidence 345666666666665554432 356789999999999999999999999999999 799999999999998875
Q ss_pred Ccc-CcccHHHHHhhcCceEEEE---------------------------------------------------------
Q 022717 126 DQF-RSDGAVVKGRAYGVRSIRV--------------------------------------------------------- 147 (293)
Q Consensus 126 ~~~-~~~d~~~~a~a~G~~~~~V--------------------------------------------------------- 147 (293)
... ...++.++.++|||.++.|
T Consensus 215 ~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~ 294 (415)
T d2ieaa2 215 GNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVA 294 (415)
T ss_dssp TTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTST
T ss_pred ccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHHHh
Confidence 433 2467889999999999877
Q ss_pred ------------eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 148 ------------DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 148 ------------dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
||+|+.+++.+++++.+. .++|++|.+.|.+.+|-.
T Consensus 295 ~l~~~~~~~l~~dGHd~~~l~~a~~~ak~~---~d~P~vI~a~TiKGkGlp 342 (415)
T d2ieaa2 295 DWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMG 342 (415)
T ss_dssp TSCHHHHTTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCT
T ss_pred hhhhhhhhhhhhccCchhhhHHHHHHHHhc---CCCceEEEEecccccCCC
Confidence 889999999999998863 567999999998877643
|
| >d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase PP module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=99.71 E-value=1.8e-17 Score=139.73 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=93.3
Q ss_pred CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc
Q 022717 48 KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI 124 (293)
Q Consensus 48 ~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~ 124 (293)
+..++.. .|+||+++|.|+|++ +. +++.|+|++|||+|++. .. +|.+|+++++|+++||.||+ |......
T Consensus 47 p~~~~~~~~~g~mG~~l~~aig~~-a~----~~~~vv~i~GDGsf~~~-~~-el~ta~~~~l~i~iiV~NN~g~~~~~q~ 119 (183)
T d2ji7a3 47 PRKRLDSGTWGVMGIGMGYCVAAA-AV----TGKPVIAVEGDSAFGFS-GM-ELETICRYNLPVTVIIMNNGGIYKGNEA 119 (183)
T ss_dssp TTCEEECTTTTCTTCHHHHHHHHH-HH----HCSCEEEEEEHHHHHTT-GG-GHHHHHHTTCCEEEEEEECSBSSCSCCC
T ss_pred CCcEEecCCccccccccchhhhhh-cC----CcceEEEEEcCcchhhc-hh-hhhhhhhccccchhhhhhhhhhhhhhhc
Confidence 3455543 589999999999876 33 57889999999999764 33 49999999999888888875 2211100
Q ss_pred --------cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.......|+.++|++||+++++|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 120 ~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~idp 178 (183)
T d2ji7a3 120 DPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDP 178 (183)
T ss_dssp CSBTTBCCTTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCT
T ss_pred cccccccccccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 011235689999999999999998 88999999999886 5899999999865
|
| >d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR PP module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI species: Desulfovibrio africanus [TaxId: 873]
Probab=98.51 E-value=8.1e-07 Score=82.41 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=73.8
Q ss_pred CCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc-------c---------CccCcccHHHHH
Q 022717 76 RKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S---------DQFRSDGAVVKG 137 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~-------~---------~~~~~~d~~~~a 137 (293)
..+..|+++.|||.+ ..|. .+|.-|...+.+|++||.||. |+++.-+ . ......|+..++
T Consensus 167 ~~k~~V~~~gGDG~~~dIG~--~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia 244 (447)
T d2c42a2 167 YTKKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMV 244 (447)
T ss_dssp TSCCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHH
T ss_pred ccCCcEEEEecCccHhhcCh--HHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHHHHH
Confidence 356789999999997 6663 348889999999777766665 6554211 1 111235889999
Q ss_pred hhcCceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 138 RAYGVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 138 ~a~G~~~~-~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.++|.+++ ++. +.++..+.+++++|.+ .+||.+|++.+
T Consensus 245 ~a~g~~YVA~~s~~~~~~~l~kaikeA~~----~~GpS~I~~~s 284 (447)
T d2c42a2 245 MTYGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYA 284 (447)
T ss_dssp HTTSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEEC
T ss_pred HHCCCceEEEEeCCCCHHHHHHHHHHHHh----CCCCeEEEeec
Confidence 99998866 564 7899999999999987 58999999976
|
| >d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Zymomonas mobilis [TaxId: 542]
Probab=96.72 E-value=0.0065 Score=49.14 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=69.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCccC---cccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR---SDGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~~---~~d~~~ 135 (293)
.-+|.|.+... +. ..+++..|=|.++ ..-+|..|...+.|+|+|.-+.......+. ..+.. ..+..+
T Consensus 53 ~~mA~gyar~t---g~-~~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (186)
T d1zpda2 53 GFSAEGYARAK---GA-AAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 125 (186)
T ss_dssp HHHHHHHHHHH---SC-EEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred ehhhhhhhhcc---cc-ceeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhh
Confidence 33566666543 22 2334445655553 334687888999999999876544322111 11111 123456
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.++.+.-...+++ +++++.+.+++|+..+..+++|+.|++-.
T Consensus 126 ~~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~PV~l~iP~ 167 (186)
T d1zpda2 126 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIAC 167 (186)
T ss_dssp HHGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred ccCCceeeeeEcC--CHHHHHHHHHHHHHHHhhCCCCEEEECCc
Confidence 7788877778886 67778888888888888888999999864
|
| >d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Aerococcus viridans [TaxId: 1377]
Probab=96.68 E-value=0.0037 Score=50.64 Aligned_cols=107 Identities=20% Similarity=0.055 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+.+ .++-.++++..|=|.++. ..+|..|...+.|+|+|.-+.......... +-..|...+++.+.-
T Consensus 57 ~~A~gyar~---tg~~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~--~Q~~d~~~~~~~itk 128 (184)
T d2djia2 57 MAAVMQSKF---GGNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDA--FQELNQNPMYDHIAV 128 (184)
T ss_dssp HHHHHHHHT---TCCCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEESCGGGTTTTC--TTCCCCHHHHHTTCS
T ss_pred HHHHhhhhc---ccCcceeeccccccccch---hHhHHHHHHhCccceeecccchhhHhhcCc--ccccccccchhhhcc
Confidence 345555433 233445555567777752 345778888999999998765432211111 112355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|. +++++.+.+++|+..+..++||+.|++-.
T Consensus 129 ~~~~v~--~~~~~~~~~~~A~~~a~~~rGPv~i~iP~ 163 (184)
T d2djia2 129 YNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLEVPG 163 (184)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEET
T ss_pred eeeccc--cchhhHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 677776 77888888999988888888999999965
|
| >d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Oxalyl-CoA decarboxylase species: Oxalobacter formigenes [TaxId: 847]
Probab=96.67 E-value=0.0037 Score=50.76 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=71.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+++. ++-.++++..|=|.++ ...+|..|...+.|+|+|.-+-.-.............|...+++.+-
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~q~~d~~~~~~~~t 127 (188)
T d2ji7a2 54 GYAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHC 127 (188)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHTGGGS
T ss_pred hhHHHHHHhhh---cccceeeccccccccc---cchhHHHHHHhcccceEEeccCchhhhcccccccceeeeecccCCcc
Confidence 44566666554 3444555556666554 33567788889999999986543221111111122346677788887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-...+|. +++++.+.+++|+..+..++ ||+.|++-.
T Consensus 128 k~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~iP~ 164 (188)
T d2ji7a2 128 KASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA 164 (188)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEcCh
Confidence 7778886 77788888888888887764 699999854
|
| >d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Catabolic acetolactate synthase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.56 E-value=0.0068 Score=48.86 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=72.5
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.+... ++-.++++..|=|.++ ..-+|..|...+.|+|+|.-+.......... ....|...+.+.+.
T Consensus 55 ~~~A~gyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~isg~~~~~~~~~~~--~q~~d~~~~~~~~t 126 (181)
T d1ozha2 55 AFMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQV--HQSMDTVAMFSPVT 126 (181)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGC
T ss_pred HHHHHHHHHhc---CCccceeeccchhhhh---hhhhHHHHhhcCCceeeeecccchhhccccc--cccccccccccccc
Confidence 34555666553 3444555556777775 2345888889999999998876543322111 12346677888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-...+|. +++++.+.+++|+..+..++ ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (181)
T d1ozha2 127 KYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQ 163 (181)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred hheeccC--chhHHHHHHHHHHHHHhhCCCccEEEEcCh
Confidence 7778886 67788888889988888764 799999964
|
| >d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate decarboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.0099 Score=47.66 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=63.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc---ccCccCc---ccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRS---DGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~---~~~~~~~---~d~~~ 135 (293)
.-+|.|.+.+. + ...+++..|=|.++ ...+|..|...++|+|+|.-+........ ....... .++.+
T Consensus 54 ~~~A~gyar~t---~-~~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (180)
T d1pvda2 54 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHR 126 (180)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHH
T ss_pred hHHHHHHhhcc---C-Cceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHH
Confidence 34566666553 2 23455566777664 34567788889999999986554332211 1111111 23445
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
..+.+--...++. +++++.+.+++|++.+...+||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~gPv~i~iP~ 168 (180)
T d1pvda2 127 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 168 (180)
T ss_dssp HHGGGCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 5666544455554 55556666666666666668999999963
|
| >d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Pyruvate oxidase species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.30 E-value=0.0078 Score=48.17 Aligned_cols=107 Identities=15% Similarity=0.048 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.+... ++-.++++..|=|.++. .-+|..|...+.|+|+|.-+........ ..+-..|...+.+.+--
T Consensus 56 ~~A~gyar~t---gk~gv~~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~--~~~Q~~d~~~~~~~itk 127 (174)
T d2ez9a2 56 MAAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVAD 127 (174)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCHHHHTTTCS
T ss_pred HHHHHHHhhc---CceeEEeecccccccch---hhhHHHHHhcCccceeeeccccccccCc--cccccchhhhhhccccc
Confidence 4556665543 34455666667777762 3457778889999999987654221110 11112344556666654
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|. +++++.+.+++|+..+....||++|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~A~~~pGPv~l~iP~ 162 (174)
T d2ez9a2 128 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 162 (174)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred cccccc--cHHHHHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 556665 56666777777777766678999999964
|
| >d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.013 Score=46.74 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+... ++-.++++..|=|.++ ..-++..|...++|+|+|+-+........ ......|...+++.+--
T Consensus 56 ~~A~gyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (175)
T d1t9ba2 56 HMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCTK 127 (175)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGSS
T ss_pred HHHHHHHHHh---CCceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCC--CccccccHhHhccccee
Confidence 4566666553 3444555556777765 23458888899999999997754322111 11123467778888866
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+++ ++..+.+.+++|++.++.+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP~ 163 (175)
T d1t9ba2 128 WNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK 163 (175)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeEecC--CHHHHHHHHHHHHHHHhcCCCccEEEEcCh
Confidence 667775 7777888888888888876 5799999854
|
| >d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Acetohydroxyacid synthase catalytic subunit species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=96.22 E-value=0.017 Score=46.98 Aligned_cols=107 Identities=20% Similarity=0.182 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+.+. +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-+........ ..+...|...+.+.+--
T Consensus 64 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 135 (195)
T d1ybha2 64 FAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSITK 135 (195)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHH---CCCeEEEEecChHHHH---HHHHHHHHHHcCCCEEEEecCCcHHHhcc--Ccccccchhhhhccccc
Confidence 4566666554 3445566666777776 23468888999999999987654432111 11223456667777765
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+|. +++++.+++++|+..+..+ .||+.|++-.
T Consensus 136 ~~~~v~--~~~~~~~~~~~A~~~a~~~r~GPV~l~iP~ 171 (195)
T d1ybha2 136 HNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (195)
T ss_dssp EEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred chhhcc--hHhhcchHHHHHHHHHhcCCCCcEEEECCh
Confidence 666665 7888889999999888876 5799999965
|
| >d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Carboxyethylarginine synthase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.12 E-value=0.024 Score=45.58 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-cccccccCccCcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
-+|-|.+... ++-.++++..|=|.++ ..-+|..|...+.|+|+|.-+... ..... ......|...+++.+-
T Consensus 51 ~~A~gyar~t---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (186)
T d2ihta2 51 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN--DTHQCLDSVAIVAPMS 122 (186)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT--TSTTCCCHHHHHGGGS
T ss_pred HHHHHHhhcc---CCcceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhcccc--ccccccccccccCCce
Confidence 3455665543 3445555556777765 334577788889999999865432 21111 1122357778888887
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++.+.+++|+..+..+ .||+.|++-..
T Consensus 123 k~~~~v~--~~~~i~~~l~~A~~~a~s~~~GPv~l~iP~D 160 (186)
T d2ihta2 123 KYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD 160 (186)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred eeccccC--CchhhhhHHHHHHHHHhcCCCeeEEEEeCHh
Confidence 7778886 7888889999999888865 47999999653
|
| >d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Benzoylformate decarboxylase species: Pseudomonas putida [TaxId: 303]
Probab=95.31 E-value=0.019 Score=45.98 Aligned_cols=110 Identities=20% Similarity=0.067 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.++.. ++-.++++..|=|.++ ..-+|..|...+.|+|+|.-+-......... .....|...+++.+-
T Consensus 50 ~~mA~gyar~t---gk~~v~~~~~GpG~~n---~~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~~-~~q~~D~~~~~~~~t 122 (180)
T d1q6za2 50 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEA-LLTNVDAANLPRPLV 122 (180)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTC-TTCCTTGGGSSTTSC
T ss_pred HHHHHHHhhhc---cCcceEEecccccccc---ccceeHhhhhcccceeeeccccccccccccc-cchhhheeecccccc
Confidence 34566665543 3455666666777775 2345888889999999998765433221110 011224445555553
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++.+.+++|++.++.+ .||+.|++-..
T Consensus 123 K~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPv~l~iP~D 160 (180)
T d1q6za2 123 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 160 (180)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred cccccCC--CHHHHHHHHHHHHHHHhcCCCccEEEEcChh
Confidence 3455664 7788888899998887766 57999999754
|
| >d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: PFOR Pyr module domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I species: Desulfovibrio africanus [TaxId: 873]
Probab=94.86 E-value=0.085 Score=44.54 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+..++|++++ +.++++.+.-.++. ...|.|..|.-.++|+++++.+-....+. ...+....|+. .++..|
T Consensus 67 ~~~~~Ga~~a------G~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~-~~~~~~q~d~~-~~~~~g 136 (257)
T d2c42a1 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHA-LSIFGDHQDIY-AARQTG 136 (257)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSS-BCCSCCSHHHH-TTTTSS
T ss_pred HHHHHHHHhc------CCCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCC-CccccchHHHH-HHHhcc
Confidence 5566776665 34566665444443 46788999999999977766665443211 11111112322 356678
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
++.+... ++.+.+.-...|.+.+.+...|+++-...+|. +|..
T Consensus 137 ~~~l~~~--s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~ 179 (257)
T d2c42a1 137 FAMLASS--SVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEI 179 (257)
T ss_dssp CEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCE
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCc
Confidence 8776654 89999999999999888889999998888875 5654
|
| >d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.29 Score=39.40 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=65.1
Q ss_pred cccccCc-cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccH
Q 022717 55 SSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 133 (293)
Q Consensus 55 ~g~lG~~-lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~ 133 (293)
.|+-.+. +++|.|+|... .-.+++.++ ++...-..+.+.++..+++++++|+...+.+...........+|+
T Consensus 75 ~GIaEq~M~~iAaGlA~~g----~~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v~~h~g~~~g~dG~THq~iEDi 147 (195)
T d2r8oa1 75 YGVREFGMTAIANGISLHG----GFLPYTSTF---LMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 147 (195)
T ss_dssp CCSCHHHHHHHHHHHHHHS----SCEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred eeeehhhHHHHHHHHHhhC----CceEEeecc---eeeeccccchhhccccccccceeeeccccccccccchhhHHHHHH
Confidence 3444433 45567776542 122233333 333234667789999999987788887776654333333344555
Q ss_pred HHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 134 VVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 134 ~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+- .+++ ++.+++ --|..++..+++.|++ +.++|+.|-.
T Consensus 148 a~-lR~iPn~~v~~--P~D~~E~~~a~~~a~~---~~~gP~ylRl 186 (195)
T d2r8oa1 148 AS-LRVTPNMSTWR--PCDQVESAVAWKYGVE---RQDGPTALIL 186 (195)
T ss_dssp HH-HHTSTTCEEEC--CSSHHHHHHHHHHHHH---CSSSCEEEEC
T ss_pred HH-HHhhCCcEEEe--cCCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 43 3333 555554 3478888888888876 3678998754
|
| >d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Pyruvate oxidase and decarboxylase Pyr module domain: Indole-3-pyruvate decarboxylase species: Enterobacter cloacae [TaxId: 550]
Probab=92.70 E-value=0.25 Score=38.70 Aligned_cols=107 Identities=21% Similarity=0.069 Sum_probs=59.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cC---ccCcccHHH
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SD---QFRSDGAVV 135 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~---~~~~~d~~~ 135 (293)
.-+|.|.+... + ...+++..|=|.++ ..-+|..|...+.|+|+|.-.......... .. .....++..
T Consensus 54 ~~~A~gyar~t---~-~~~v~~t~GpG~~n---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
T d1ovma2 54 SYAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 126 (178)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHhcC---C-CceEEeeccccccc---cchhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccc
Confidence 34455665543 2 23455556777664 234577888899999999876543221110 00 011235566
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+.+.+--....++ ++.++.+..+.+...++ .++|+.|++-
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~~~~~~~a~~-~~~Pv~i~iP 166 (178)
T d1ovma2 127 MSEPITVAQAVLT--EQNACYEIDRVLTTMLR-ERRPGYLMLP 166 (178)
T ss_dssp HTGGGCSEEEECC--TTTHHHHHHHHHHHHHH-HTCCEEEEEE
T ss_pred cccccceeEEEeC--cHHHHHHHHHHHHHHHh-CCCCEEEEEC
Confidence 6676655566665 34455554444443333 4689999874
|
| >d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Leishmania mexicana mexicana [TaxId: 44270]
Probab=92.29 E-value=0.74 Score=36.74 Aligned_cols=110 Identities=13% Similarity=0.012 Sum_probs=69.2
Q ss_pred cccccCc-cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccH
Q 022717 55 SSTIATQ-LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA 133 (293)
Q Consensus 55 ~g~lG~~-lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~ 133 (293)
.|+-.+. +.+|.|.|+.. .-.++++++ ..|.+ ..++.+..++..++|+++|....++............+|+
T Consensus 69 ~GIaEqnm~~iAaGla~~~----g~~p~~~t~--~~F~~-r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~THq~ieDl 141 (190)
T d1r9ja1 69 FGVREHAMCAILNGLDAHD----GIIPFGGTF--LNFIG-YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELV 141 (190)
T ss_dssp CCSCHHHHHHHHHHHHHHS----SCEEEEEEE--GGGGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred eccchhhHHHHHHHHHHcC----CcceEEecc--hhhhc-cchHHHHHhcccCCceEEEEecCccccCCCCcchhHHHHH
Confidence 4555554 56677776542 223344444 23433 3456688888999999999999988665433333344565
Q ss_pred HHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 134 VVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 134 ~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+- .+++ ++.+++ --|..++..+++.|++ ..++|+.|-.
T Consensus 142 a~-~R~iPn~~V~~--PaD~~E~~~al~~a~~---~~~gP~yiRl 180 (190)
T d1r9ja1 142 AA-LRAMPNLQVIR--PSDQTETSGAWAVALS---SIHTPTVLCL 180 (190)
T ss_dssp HH-HHHSTTCEEEC--CSSHHHHHHHHHHHHH---CTTCCEEEEC
T ss_pred HH-HHhcCCEEEEe--cCCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 43 3333 565554 3478888888888875 3688998754
|
| >d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.42 Score=38.47 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=61.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+++|.|+|+.- ..-++++.+ =..|... ....+..++..++|+++|....+++...........+|++- .+ .
T Consensus 85 ~~iaaGlA~~G----~~~~p~~~t-~~~f~~~-~~~~~~~~~~~~~~v~~v~t~~g~~~g~dG~THq~ieDia~-~r--~ 155 (197)
T d1gpua2 85 GAIMNGISAFG----ANYKPYGGT-FLNFVSY-AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAH-FR--S 155 (197)
T ss_dssp HHHHHHHHHHC----TTCEEEEEE-EHHHHGG-GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH-HH--T
T ss_pred HHHHHHHHHcC----CceeEEEEe-ehhhhhh-hHHHHHHhhhcCCceEEEEecccccccccccchhhHHHHHH-Hh--c
Confidence 45566766542 222222221 2334332 34457778889999999999888876533333333445442 33 3
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+|.+.| .--|..++..+++.|++ ..++|+.|-.
T Consensus 156 iPn~~v~~PaD~~e~~~a~~~a~~---~~~gP~yiRl 189 (197)
T d1gpua2 156 LPNIQVWRPADGNEVSAAYKNSLE---SKHTPSIIAL 189 (197)
T ss_dssp SSSCEEECCCSHHHHHHHHHHHHH---CSSCCEEEEC
T ss_pred CCCcEEEecCCHHHHHHHHHHHHH---cCCCCEEEEe
Confidence 444443 33478888888888876 3578999854
|
| >d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.76 Score=36.68 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=61.9
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhh--------cCCCEEEEEEeCCccc
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAI 120 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~--------~~lpvi~vi~NN~~~~ 120 (293)
.+++..+-+=...++.|+|+|++ +-++|+.+==..|..-.+.+-.|.|+. +++|+++.+-..+..-
T Consensus 51 ~Rv~dtPisE~~~~G~a~G~A~~------G~rPive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g 124 (192)
T d2ozlb1 51 KRIIDTPISEMGFAGIAVGAAMA------GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAG 124 (192)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT------TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSS
T ss_pred ceEEecccchhHHHHHHHHHHhc------CCceEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCC
Confidence 34444333333446677887764 233444333333433345565666653 4578888776655433
Q ss_pred cccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 121 STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 121 ~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
..+...+ ++..+...+ |+.++ --.++.+.+..++.|++ .+.|+++-
T Consensus 125 ~g~~Hs~----~~~~~~~~~PGl~Vv--~Ps~p~da~gll~~Ai~----~~~Pvi~~ 171 (192)
T d2ozlb1 125 VAAQHSQ----CFAAWYGHCPGLKVV--SPWNSEDAKGLIKSAIR----DNNPVVVL 171 (192)
T ss_dssp CCGGGCC----CCHHHHHTSTTCEEE--CCCSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred ccccccc----chHHhhccCCceEEE--ecCCHHHHHHHHHHHHh----CCCCEEEE
Confidence 3332211 223333333 44444 34589999999999996 68898763
|
| >d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like Pyr module domain: Transketolase (TK), Pyr module species: Maize (Zea mays) [TaxId: 4577]
Probab=87.52 E-value=3.4 Score=32.66 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhhhcCCC-ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~-~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|.|+|+. +.+ .++++.+ ..|.+. ....+..++..++|+++|....+++............|++- .+++
T Consensus 80 ~~iAaGlA~~----~~G~~p~~~tf--~~F~~~-~~~~~~~~~~~~~~v~~v~~~~g~~~g~dG~TH~~ieDia~-~r~i 151 (192)
T d1itza2 80 GAICNGIALH----SPGFVPYCATF--FVFTDY-MRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVS-FRAM 151 (192)
T ss_dssp HHHHHHHHTT----CTTCEEEEEEE--GGGHHH-HHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH-HHSS
T ss_pred HHHHHHHHHh----cCCCEEEEEEE--hhhhhh-ccchhhhhccccccceEEEecCCcccccCCcccHHHHHHHH-HhCc
Confidence 4456666542 122 2333333 455543 34557888899999999999888876543333333445432 2333
Q ss_pred -CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 -GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 -G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
++.++. --|..++..+++.|+. +.++|+.|-.
T Consensus 152 Pn~~v~~--P~d~~e~~~~~~~a~~---~~~gP~yiRl 184 (192)
T d1itza2 152 PNILMLR--PADGNETAGAYKVAVL---NRKRPSILAL 184 (192)
T ss_dssp SSCEEEC--CCSHHHHHHHHHHHHH---CTTSCEEEEE
T ss_pred CCceEEe--cCCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 444443 3478888888888875 3678998865
|
| >d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.98 E-value=1.8 Score=34.27 Aligned_cols=113 Identities=16% Similarity=0.027 Sum_probs=56.8
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhh--------cCCCEEEEEEeCCccc
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAI 120 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~--------~~lpvi~vi~NN~~~~ 120 (293)
.+++...-+=...++.|+|+|++- -..++.....|=.+. .+.+-.|.++. ++.|+++-+-.....-
T Consensus 55 ~Rv~dtpIsE~~~~G~a~GlA~~G----~rPive~~~~df~~~--a~dQi~n~~ak~~~~s~g~~~~p~vir~~~G~~~~ 128 (191)
T d1ik6a1 55 ERVIDTPLNEGGILGFAMGMAMAG----LKPVAEIQFVDFIWL--GADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR 128 (191)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHTT----CEEEEECCCC----C--CHHHHHHHHHHHHC------CCCCEEEEEECC---
T ss_pred heeeccccchhHHHHHHHHHHHhc----CceEEEEEecchhHH--HHHHHHHHHHHHHHhcCCccccccceeecccCCCC
Confidence 344444333334466677777642 223333346666653 34455666654 3568777776543322
Q ss_pred cccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 121 STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 121 ~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..+. . +.++..+.+.+ |+.++. -.|+.+.+..++.|++ .++|+++.-
T Consensus 129 gg~~---H-s~~~~a~~~~iPgl~Vv~--Ps~p~da~~ll~~al~----~~~Pv~~~e 176 (191)
T d1ik6a1 129 GGLY---H-SNSPEAIFVHTPGLVVVM--PSTPYNAKGLLKAAIR----GDDPVVFLE 176 (191)
T ss_dssp ------------HHHHHHTCTTCEEEC--CCSHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred Cccc---c-cCCHHHHHHHhhcccEEe--cCCHHHHHHHHHHHHh----CCCcEEEEE
Confidence 1111 1 12333444433 444443 3489999999999996 688987644
|
| >d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module species: Pseudomonas putida [TaxId: 303]
Probab=85.83 E-value=2.8 Score=33.49 Aligned_cols=112 Identities=14% Similarity=0.022 Sum_probs=61.1
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEE--eCcccccchHHHHHHHHHh--------hcCCCEEEEEEeCCc
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY--FGDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGW 118 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~--~GDGa~~~G~~~Eal~~A~--------~~~lpvi~vi~NN~~ 118 (293)
.+++...-+=...++.|+|+|++- .++|+. ..|=.+. .+.+-.|.++ .++.|+++..-...+
T Consensus 52 ~Rv~dtpIaE~~~vG~A~GlA~~G------~rPvve~~~~df~~~--a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~ 123 (204)
T d1qs0b1 52 SRVFDAPISESGIVGTAVGMGAYG------LRPVVEIQFADYFYP--ASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG 123 (204)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHHT------CEEEEECSCGGGCGG--GHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCS
T ss_pred hheecccccceeehhHHHHHhcCC------CcEEEEEEecchhhH--HHHHHHHHHHHhhcccccCcccceEEEcCcccc
Confidence 344444333334467788888863 244444 3444432 3444446665 234577776655433
Q ss_pred cccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 119 AISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 119 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.-..+.. +..+. .+.+. +|++.| --.|+.+.+..++.|++ .++|+++--.
T Consensus 124 ~~~g~~H---s~~~~-s~~~~--iPgl~Vv~Ps~~~da~~ll~~a~~----~~~Pvi~~e~ 174 (204)
T d1qs0b1 124 IYGGQTH---SQSPE-AMFTQ--VCGLRTVMPSNPYDAKGLLIASIE----CDDPVIFLEP 174 (204)
T ss_dssp SSCCSSS---SCCCH-HHHTT--STTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEE
T ss_pred cCccccc---ccCHH-HHHhc--CCCcEEEeeCCHHHHHHHHHHHHh----CCCcEEEEee
Confidence 2222222 22233 34433 444443 44589999999999986 6889877443
|
| >d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.40 E-value=3.8 Score=32.69 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=59.2
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCC-EEEEEEeCCccc
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAP-VIFICRNNGWAI 120 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lp-vi~vi~NN~~~~ 120 (293)
+++..+-+=...++.|+|+|++- .+.|+.+-=+.|..-.+.+-.|.++.+ +.| +++..--..++.
T Consensus 67 Rv~dtPIsE~~~~G~a~G~A~~G------~rPive~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~ 140 (203)
T d2bfdb1 67 RVFNTPLCEQGIVGFGIGIAVTG------ATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGH 140 (203)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTT------CCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSS
T ss_pred heeccccccceecchhhhhhhcc------cceEEEEEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCcc
Confidence 44444333334456788887652 234444433444433566666777653 345 444444333333
Q ss_pred cccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 121 STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 121 ~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
..+... .++..+...+ |+.++. -.++.+.+..++.|++ .+.|+++-
T Consensus 141 g~~~HS----q~~~~~~~~~PGl~Vv~--Ps~p~Da~gll~~ai~----~~~Pvi~~ 187 (203)
T d2bfdb1 141 GALYHS----QSPEAFFAHCPGIKVVI--PRSPFQAKGLLLSCIE----DKNPCIFF 187 (203)
T ss_dssp CGGGSS----CCCHHHHHTSTTCEEEC--CSSHHHHHHHHHHHHH----SSSCEEEE
T ss_pred cccccc----ccHHHHHcCCCCcEEEe--cCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 322222 2233333333 555554 3489999999999986 58898763
|
| >d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase Pyr module domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.59 E-value=4.3 Score=32.09 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=61.8
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccc
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAI 120 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~ 120 (293)
.+.+..+-+=.+.++.|+|+|++ +.++|+.+==..|.--.+.+-+|.|+.+ +.|+++-+-..+..-
T Consensus 50 ~Rv~dtPisE~~~~G~a~G~Al~------G~rpIve~~~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~ 123 (192)
T d1w85b1 50 DRVFDTPLAESGIGGLAIGLALQ------GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVH 123 (192)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT------TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSC
T ss_pred heeecccccccchHHHHHHHHhc------cCceEEEEEeccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccC
Confidence 34444443334456678888764 3345555544444333455555666643 578777666554332
Q ss_pred cccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 022717 121 STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 175 (293)
Q Consensus 121 ~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lI 175 (293)
..+...+ ++..+.... |++++ --.++.+.+..++.|++ .+.|+++
T Consensus 124 ~g~~HSq----s~e~~f~~~PGlkVv--~Ps~p~Da~gll~~Ai~----~~~Pvi~ 169 (192)
T d1w85b1 124 TPELHSD----SLEGLVAQQPGLKVV--IPSTPYDAKGLLISAIR----DNDPVIF 169 (192)
T ss_dssp CCTTSSC----CCHHHHTTSTTCEEE--CCSSHHHHHHHHHHHHH----SSSCEEE
T ss_pred Ccccccc----CHHHHhhcCCCeeEE--eeCCHHHHHHHHHHHHh----CCCCEEE
Confidence 3333222 333333322 44444 34588898999999886 6789855
|