Citrus Sinensis ID: 022752

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
cccccccEEEEEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHcccccccccccEEEEccccHHHHHHHHHcccccEEEEEcccccHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHcccccccccccccccccccccccccc
cccccccEEEEEEEEcccccccEEEEEcccccccEEEEEcccccccccEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHcccccccHHHHHHHHHHHccEEcc
mdcqnggfVEAVIMRYDsslgkyngkprpggprstlcissqvgckmgcnfcatgtmgfksnlssgEIVEQLVHASRLSNIRNVVfmgmgeplnNYAALVEAVRImtglpfqvspkritvSTVGIVHAINKFhsdlpglnlavslhapvqdvrcqimpaaraFPLEKLMNALKEYQKNSQQKIFIEYIMldgvndeeQHAHQLGKLLETFQVVVNLipfnpigsvsqfrtssddkvsSFQKILRGSYNIRTTVRKQMgqdisgacgqlvvnlpdkisakstppvtdiedlcir
MDCQNGGFVEAVIMRYDSSLGkyngkprpggprstLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNlpdkisakstppvtdiedlcir
MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
******GFVEAVIMRYDS****************TLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF*********SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLP********************
MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ*********************D*C**
MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ***********FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL**********P*T**EDLCIR
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MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
A0LQM1342 Dual-specificity RNA meth yes no 0.808 0.690 0.48 6e-57
Q0VND7381 Dual-specificity RNA meth yes no 0.876 0.671 0.437 1e-54
Q6MDD0358 Probable dual-specificity yes no 0.815 0.664 0.422 3e-53
Q1DCU1359 Dual-specificity RNA meth yes no 0.907 0.738 0.386 3e-53
Q2J713421 Probable dual-specificity yes no 0.856 0.593 0.415 1e-52
A9A3L9351 Ribosomal RNA large subun yes no 0.890 0.740 0.388 1e-52
A1WXZ3359 Dual-specificity RNA meth yes no 0.859 0.699 0.448 3e-52
A1WE19391 Dual-specificity RNA meth yes no 0.832 0.621 0.455 6e-52
A1A1I4386 Probable dual-specificity yes no 0.866 0.655 0.396 2e-51
A2SHB8394 Dual-specificity RNA meth yes no 0.849 0.629 0.444 5e-51
>sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1 Back     alignment and function desciption
 Score =  221 bits (562), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 120/250 (48%), Positives = 165/250 (66%), Gaps = 14/250 (5%)

Query: 29  PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASR----LSNIRNVV 84
           P  PRSTLC+SSQVGC +GC FC TG++GFK NLS+ EIV+Q+    R     S I N+V
Sbjct: 97  PDLPRSTLCVSSQVGCALGCKFCLTGSLGFKRNLSAAEIVDQVCQVQRDLGSRSRITNIV 156

Query: 85  FMGMGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLA 141
           FMGMGEPL N  +++ A+R++    G+ F  S +RIT+ST G+V  + +   + P +NLA
Sbjct: 157 FMGMGEPLANLDSVLRAIRVIAEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLA 213

Query: 142 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 201
           VSLHA   ++R ++MP  R +PLE LM A +EY    +++I  EYI+LDG+ND+ + A Q
Sbjct: 214 VSLHAAENELRAELMPVNRTYPLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQ 273

Query: 202 LGKLLETFQVVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 260
           L KLL   +  VNL+PFNP  GSV  FR  S+ +V +FQ+ L+ +  I T VR+  G +I
Sbjct: 274 LVKLLHGIRAKVNLMPFNPHPGSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEI 330

Query: 261 SGACGQLVVN 270
             ACGQLV  
Sbjct: 331 GAACGQLVAE 340
Specifically methylates position 2 of adenine 2503 in 23S rRNA.
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 2
>sp|Q0VND7|RLMN_ALCBS Dual-specificity RNA methyltransferase RlmN OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2 OS=Protochlamydia amoebophila (strain UWE25) GN=rlmN2 PE=3 SV=2 Back     alignment and function description
>sp|Q1DCU1|RLMN1_MYXXD Dual-specificity RNA methyltransferase RlmN 1 OS=Myxococcus xanthus (strain DK 1622) GN=rlmN1 PE=3 SV=1 Back     alignment and function description
>sp|Q2J713|RLMN_FRASC Probable dual-specificity RNA methyltransferase RlmN OS=Frankia sp. (strain CcI3) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A9A3L9|RLMN_NITMS Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A1WXZ3|RLMN_HALHL Dual-specificity RNA methyltransferase RlmN OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A1WE19|RLMN_VEREI Dual-specificity RNA methyltransferase RlmN OS=Verminephrobacter eiseniae (strain EF01-2) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A1A1I4|RLMN_BIFAA Probable dual-specificity RNA methyltransferase RlmN OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A2SHB8|RLMN_METPP Dual-specificity RNA methyltransferase RlmN OS=Methylibium petroleiphilum (strain PM1) GN=rlmN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
449438321384 PREDICTED: dual-specificity RNA methyltr 0.989 0.752 0.826 1e-142
224060769373 predicted protein [Populus trichocarpa] 0.976 0.764 0.859 1e-142
225428987372 PREDICTED: ribosomal RNA large subunit m 0.979 0.768 0.842 1e-140
357480659380 Ribosomal RNA large subunit methyltransf 0.982 0.755 0.809 1e-137
356539162378 PREDICTED: ribosomal RNA large subunit m 0.979 0.756 0.808 1e-136
357113533382 PREDICTED: ribosomal RNA large subunit m 0.986 0.753 0.788 1e-133
15230899372 radical SAM domain-containing protein [A 0.986 0.774 0.784 1e-133
388521505385 unknown [Lotus japonicus] 0.993 0.753 0.786 1e-133
242036573381 hypothetical protein SORBIDRAFT_01g04367 0.996 0.763 0.773 1e-133
226498566381 uncharacterized protein LOC100277741 [Ze 0.986 0.755 0.781 1e-132
>gi|449438321|ref|XP_004136937.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like [Cucumis sativus] gi|449495695|ref|XP_004159917.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/289 (82%), Positives = 265/289 (91%)

Query: 1   MDCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKS 60
           +  Q+G FVEAVIMRYD+ LGKY GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKS
Sbjct: 94  IKLQSGAFVEAVIMRYDTRLGKYGGKPRPGGLRSTLCISSQVGCKMGCRFCATGTMGFKS 153

Query: 61  NLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVS 120
           NL+SGEIVEQLVHASR S IRN+VFMGMGEPLNNY++LVEAVR M   PF +SPKRIT+S
Sbjct: 154 NLTSGEIVEQLVHASRFSQIRNIVFMGMGEPLNNYSSLVEAVRAMMAPPFLLSPKRITIS 213

Query: 121 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ 180
           TVGI+HAINK HSDLPGLNLAVSLHAPVQD+RCQIMPAARAFPL+KLM+AL+EYQK SQQ
Sbjct: 214 TVGIIHAINKLHSDLPGLNLAVSLHAPVQDIRCQIMPAARAFPLQKLMDALQEYQKKSQQ 273

Query: 181 KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 240
           KI IEYIMLDGVNDEEQHAHQLGKLLETFQV+VNLIPFNPIGS SQF+TSSD+KVS FQ+
Sbjct: 274 KILIEYIMLDGVNDEEQHAHQLGKLLETFQVIVNLIPFNPIGSSSQFKTSSDEKVSVFQQ 333

Query: 241 ILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDL 289
           +LRG+YNIRTT+RKQMGQDISGACGQLVV+LP++ S+K +  V DIEDL
Sbjct: 334 VLRGTYNIRTTIRKQMGQDISGACGQLVVSLPNRSSSKQSSVVPDIEDL 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa] gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428987|ref|XP_002265287.1| PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis vinifera] gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera] gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357480659|ref|XP_003610615.1| Ribosomal RNA large subunit methyltransferase N [Medicago truncatula] gi|355511950|gb|AES93573.1| Ribosomal RNA large subunit methyltransferase N [Medicago truncatula] Back     alignment and taxonomy information
>gi|356539162|ref|XP_003538069.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357113533|ref|XP_003558557.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 2-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana] gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388521505|gb|AFK48814.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226498566|ref|NP_001144705.1| uncharacterized protein LOC100277741 [Zea mays] gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2091161372 AT3G19630 [Arabidopsis thalian 0.986 0.774 0.784 1.5e-120
DICTYBASE|DDB_G0288255407 DDB_G0288255 "putative ribosom 0.873 0.626 0.424 6.5e-51
UNIPROTKB|Q603C0366 rlmN "Dual-specificity RNA met 0.832 0.663 0.432 7.7e-48
UNIPROTKB|P36979384 rlmN "23S rRNA m2A2503 methylt 0.832 0.632 0.420 6.2e-46
UNIPROTKB|Q8EC29373 rlmN "Dual-specificity RNA met 0.832 0.651 0.393 3.1e-44
TIGR_CMR|SO_3315373 SO_3315 "conserved hypothetica 0.832 0.651 0.393 3.1e-44
TIGR_CMR|CJE_1882356 CJE_1882 "radical SAM enzyme, 0.869 0.713 0.389 3.9e-44
UNIPROTKB|Q9KTX3373 rlmN "Dual-specificity RNA met 0.832 0.651 0.409 5e-44
TIGR_CMR|VC_0757373 VC_0757 "conserved hypothetica 0.832 0.651 0.409 5e-44
UNIPROTKB|Q83C77370 rlmN "Dual-specificity RNA met 0.832 0.656 0.408 6.4e-44
TAIR|locus:2091161 AT3G19630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
 Identities = 226/288 (78%), Positives = 255/288 (88%)

Query:     4 QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
             QNG FVEAV+MRYD+ LG   GKPRPGG RSTLCISSQVGCKMGC FCATGTMGFKSNL+
Sbjct:    85 QNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLT 144

Query:    64 SGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVG 123
             SGEIVEQLVHASR+++IRN+VFMGMGEPLNNY A+VEAVR+M   PFQ+SPKRIT+STVG
Sbjct:   145 SGEIVEQLVHASRIADIRNIVFMGMGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVG 204

Query:   124 IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF 183
             IVHAINK H+DLPG++LAVSLHAPVQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIF
Sbjct:   205 IVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIF 264

Query:   184 IEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 243
             IEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFNPIGS SQF TSS   VS FQKILR
Sbjct:   265 IEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILR 324

Query:   244 GSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIEDLCI 291
              +Y IRTT+RK+MGQDISGACGQLVVN PD      T  + DIEDL +
Sbjct:   325 ETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDLLL 372
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0008173 "RNA methyltransferase activity" evidence=IEA
GO:0051536 "iron-sulfur cluster binding" evidence=IEA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
DICTYBASE|DDB_G0288255 DDB_G0288255 "putative ribosomal RNA large subunit methyltransferase N" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q603C0 rlmN "Dual-specificity RNA methyltransferase RlmN" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|P36979 rlmN "23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EC29 rlmN "Dual-specificity RNA methyltransferase RlmN" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3315 SO_3315 "conserved hypothetical protein TIGR00048" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1882 CJE_1882 "radical SAM enzyme, Cfr family" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KTX3 rlmN "Dual-specificity RNA methyltransferase RlmN" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0757 VC_0757 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q83C77 rlmN "Dual-specificity RNA methyltransferase RlmN" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I1064
hypothetical protein (373 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00002342
methionyl-trna formyltransferase (EC-2.1.2.9) (356 aa)
•     • 0.467
estExt_Genewise1_v1.C_1290095
ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa)
•       0.424
estExt_fgenesh4_pg.C_LG_I2289
SubName- Full=Putative uncharacterized protein; (226 aa)
•       0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
COG0820349 COG0820, COG0820, Predicted Fe-S-cluster redox enz 1e-101
TIGR00048355 TIGR00048, TIGR00048, 23S rRNA m2A2503 methyltrans 2e-85
PRK14460354 PRK14460, PRK14460, ribosomal RNA large subunit me 3e-80
PRK14459373 PRK14459, PRK14459, ribosomal RNA large subunit me 2e-79
PRK14454342 PRK14454, PRK14454, ribosomal RNA large subunit me 2e-77
PRK14468343 PRK14468, PRK14468, ribosomal RNA large subunit me 8e-77
PRK14469343 PRK14469, PRK14469, ribosomal RNA large subunit me 4e-76
PRK14457345 PRK14457, PRK14457, ribosomal RNA large subunit me 7e-76
PRK14455356 PRK14455, PRK14455, ribosomal RNA large subunit me 1e-75
PRK14467348 PRK14467, PRK14467, ribosomal RNA large subunit me 4e-74
PRK14463349 PRK14463, PRK14463, ribosomal RNA large subunit me 4e-74
PRK14462356 PRK14462, PRK14462, ribosomal RNA large subunit me 3e-73
PRK11194372 PRK11194, PRK11194, ribosomal RNA large subunit me 5e-72
PRK14453347 PRK14453, PRK14453, chloramphenicol/florfenicol re 1e-71
PRK14461371 PRK14461, PRK14461, ribosomal RNA large subunit me 3e-70
PRK14466345 PRK14466, PRK14466, ribosomal RNA large subunit me 3e-70
PRK14456368 PRK14456, PRK14456, ribosomal RNA large subunit me 4e-63
PRK14465342 PRK14465, PRK14465, ribosomal RNA large subunit me 1e-55
PRK14470336 PRK14470, PRK14470, ribosomal RNA large subunit me 1e-49
PRK14464344 PRK14464, PRK14464, ribosomal RNA large subunit me 9e-45
pfam04055165 pfam04055, Radical_SAM, Radical SAM superfamily 2e-12
cd01335204 cd01335, Radical_SAM, Radical SAM superfamily 1e-05
TIGR03906 467 TIGR03906, quino_hemo_SAM, quinohemoprotein amine 0.001
>gnl|CDD|223890 COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information 
 Score =  300 bits (771), Expect = e-101
 Identities = 117/274 (42%), Positives = 164/274 (59%), Gaps = 23/274 (8%)

Query: 4   QNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLS 63
            +G  +E V++                  R+TLC+SSQVGC +GC FCATG  G   NLS
Sbjct: 85  PDGTMIETVLIPEKD--------------RNTLCVSSQVGCPVGCTFCATGQGGLNRNLS 130

Query: 64  SGEIVEQLVHASRL------SNIRNVVFMGMGEPLNNYAALVEAVRIMTG-LPFQVSPKR 116
           +GEIVEQ++ A++         I NVVFMGMGEPL N   +V+A+ I+       +S +R
Sbjct: 131 AGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRR 190

Query: 117 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 176
           ITVST GIV  I K   +  G+ LA+SLHAP  ++R Q+MP  + +P+E+L+ A++ Y +
Sbjct: 191 ITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPE 250

Query: 177 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 236
            S +++  EY++LDGVND  +HA +L KLL+     VNLIP+NP+   S +  SS +++ 
Sbjct: 251 KSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPV-PGSDYERSSKERIR 309

Query: 237 SFQKILRGSYNIRTTVRKQMGQDISGACGQLVVN 270
            F KIL     +  TVRK  G DI  ACGQL   
Sbjct: 310 KFLKIL-KKAGVLVTVRKTRGDDIDAACGQLRGK 342

Length = 349
>gnl|CDD|232798 TIGR00048, TIGR00048, 23S rRNA m2A2503 methyltransferase Back     alignment and domain information
>gnl|CDD|172935 PRK14460, PRK14460, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184689 PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184686 PRK14454, PRK14454, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184694 PRK14468, PRK14468, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172944 PRK14469, PRK14469, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184688 PRK14457, PRK14457, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237717 PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184693 PRK14467, PRK14467, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237720 PRK14463, PRK14463, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237719 PRK14462, PRK14462, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|183031 PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|237718 PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237721 PRK14466, PRK14466, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172945 PRK14470, PRK14470, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|234391 TIGR03906, quino_hemo_SAM, quinohemoprotein amine dehydrogenase maturation protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
PRK14461371 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14462356 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14467348 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14459373 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14466345 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14465342 ribosomal RNA large subunit methyltransferase N; P 100.0
TIGR00048355 radical SAM enzyme, Cfr family. A Staphylococcus s 100.0
PRK14470336 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14457345 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14468343 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14454342 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14455356 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14469343 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14456368 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14453347 chloramphenicol/florfenicol resistance protein; Pr 100.0
PRK14460354 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14463349 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK11194372 ribosomal RNA large subunit methyltransferase N; P 100.0
COG0820349 Predicted Fe-S-cluster redox enzyme [General funct 100.0
PRK14464344 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK11145246 pflA pyruvate formate lyase-activating enzyme 1; P 100.0
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 99.97
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 99.97
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 99.95
COG2896322 MoaA Molybdenum cofactor biosynthesis enzyme [Coen 99.95
PRK00164331 moaA molybdenum cofactor biosynthesis protein A; R 99.94
PRK13361329 molybdenum cofactor biosynthesis protein A; Provis 99.94
TIGR01290 442 nifB nitrogenase cofactor biosynthesis protein Nif 99.94
PRK13762322 tRNA-modifying enzyme; Provisional 99.94
PRK10076213 pyruvate formate lyase II activase; Provisional 99.94
TIGR02668302 moaA_archaeal probable molybdenum cofactor biosynt 99.94
PLN02951373 Molybderin biosynthesis protein CNX2 99.93
TIGR02666334 moaA molybdenum cofactor biosynthesis protein A, b 99.93
TIGR02495191 NrdG2 anaerobic ribonucleoside-triphosphate reduct 99.93
COG0731296 Fe-S oxidoreductases [Energy production and conver 99.92
PRK05301 378 pyrroloquinoline quinone biosynthesis protein PqqE 99.91
TIGR02109358 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. 99.9
TIGR03470318 HpnH hopanoid biosynthesis associated radical SAM 99.9
COG2100414 Predicted Fe-S oxidoreductase [General function pr 99.88
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 99.86
TIGR03278 404 methan_mark_10 putative methanogenesis marker prot 99.86
PRK13758 370 anaerobic sulfatase-maturase; Provisional 99.85
COG1313335 PflX Uncharacterized Fe-S protein PflX, homolog of 99.85
TIGR03822321 AblA_like_2 lysine-2,3-aminomutase-related protein 99.83
PRK13745 412 anaerobic sulfatase-maturase; Provisional 99.82
TIGR00238331 KamA family protein. Note that the E. coli homolog 99.82
COG0641 378 AslB Arylsulfatase regulator (Fe-S oxidoreductase) 99.8
COG0535347 Predicted Fe-S oxidoreductases [General function p 99.79
smart00729216 Elp3 Elongator protein 3, MiaB family, Radical SAM 99.78
TIGR03365238 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn 99.78
TIGR03820417 lys_2_3_AblA lysine-2,3-aminomutase. This model de 99.77
PF04055166 Radical_SAM: Radical SAM superfamily; InterPro: IP 99.76
COG5014228 Predicted Fe-S oxidoreductase [General function pr 99.74
cd01335204 Radical_SAM Radical SAM superfamily. Enzymes of th 99.73
TIGR02491154 NrdG anaerobic ribonucleoside-triphosphate reducta 99.73
PRK07094323 biotin synthase; Provisional 99.68
PF13353139 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 99.67
PRK11121154 nrdG anaerobic ribonucleotide reductase-activating 99.61
COG1509369 KamA Lysine 2,3-aminomutase [Amino acid transport 99.61
PRK09240371 thiH thiamine biosynthesis protein ThiH; Reviewed 99.59
TIGR02826147 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph 99.58
TIGR00433296 bioB biotin synthetase. Catalyzes the last step of 99.58
COG0602212 NrdG Organic radical activating enzymes [Posttrans 99.55
PF13394119 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 99.53
TIGR02026497 BchE magnesium-protoporphyrin IX monomethyl ester 99.51
PRK06256336 biotin synthase; Validated 99.51
TIGR01125430 MiaB-like tRNA modifying enzyme YliG, TIGR01125. T 99.48
COG2108353 Uncharacterized conserved protein related to pyruv 99.47
PRK08508279 biotin synthase; Provisional 99.46
PRK14862440 rimO ribosomal protein S12 methylthiotransferase; 99.46
TIGR03699340 mena_SCO4550 menaquinone biosynthesis protein, SCO 99.45
PRK15108345 biotin synthase; Provisional 99.44
TIGR03471472 HpnJ hopanoid biosynthesis associated radical SAM 99.44
PLN02389379 biotin synthase 99.44
PRK14338459 (dimethylallyl)adenosine tRNA methylthiotransferas 99.43
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.43
PRK05481289 lipoyl synthase; Provisional 99.42
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 99.42
PRK05799 374 coproporphyrinogen III oxidase; Provisional 99.42
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 99.42
TIGR00539360 hemN_rel putative oxygen-independent coproporphyri 99.42
PRK09249 453 coproporphyrinogen III oxidase; Provisional 99.41
PRK13347 453 coproporphyrinogen III oxidase; Provisional 99.4
PRK06245336 cofG FO synthase subunit 1; Reviewed 99.4
PRK06267350 hypothetical protein; Provisional 99.39
PRK08446350 coproporphyrinogen III oxidase; Provisional 99.39
TIGR00538 455 hemN oxygen-independent coproporphyrinogen III oxi 99.38
PRK05660 378 HemN family oxidoreductase; Provisional 99.38
KOG2876323 consensus Molybdenum cofactor biosynthesis pathway 99.36
TIGR01579414 MiaB-like-C MiaB-like tRNA modifying enzyme. This 99.35
TIGR00510302 lipA lipoate synthase. The family shows strong seq 99.35
PRK08207488 coproporphyrinogen III oxidase; Provisional 99.35
PRK12928290 lipoyl synthase; Provisional 99.35
PRK14331437 (dimethylallyl)adenosine tRNA methylthiotransferas 99.33
TIGR00089429 RNA modification enzyme, MiaB family. This subfami 99.32
TIGR01578420 MiaB-like-B MiaB-like tRNA modifying enzyme, archa 99.31
PRK14340445 (dimethylallyl)adenosine tRNA methylthiotransferas 99.31
PRK14334440 (dimethylallyl)adenosine tRNA methylthiotransferas 99.31
PRK14332449 (dimethylallyl)adenosine tRNA methylthiotransferas 99.29
PRK05628 375 coproporphyrinogen III oxidase; Validated 99.29
PRK08599 377 coproporphyrinogen III oxidase; Provisional 99.29
PRK14325444 (dimethylallyl)adenosine tRNA methylthiotransferas 99.28
PRK14327509 (dimethylallyl)adenosine tRNA methylthiotransferas 99.26
PRK08208 430 coproporphyrinogen III oxidase; Validated 99.26
PRK14336418 (dimethylallyl)adenosine tRNA methylthiotransferas 99.26
PLN02428349 lipoic acid synthase 99.25
PRK14335455 (dimethylallyl)adenosine tRNA methylthiotransferas 99.24
TIGR01574438 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 99.22
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 99.21
PRK14329467 (dimethylallyl)adenosine tRNA methylthiotransferas 99.2
PRK14328439 (dimethylallyl)adenosine tRNA methylthiotransferas 99.2
PRK14339420 (dimethylallyl)adenosine tRNA methylthiotransferas 99.2
TIGR01212302 radical SAM protein, TIGR01212 family. This unchar 99.2
PRK14337446 (dimethylallyl)adenosine tRNA methylthiotransferas 99.18
TIGR01210313 conserved hypothetical protein TIGR01210. This fam 99.18
PRK14326502 (dimethylallyl)adenosine tRNA methylthiotransferas 99.15
PRK14330434 (dimethylallyl)adenosine tRNA methylthiotransferas 99.15
COG0621437 MiaB 2-methylthioadenine synthetase [Translation, 99.14
TIGR03550322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.13
COG1625 414 Fe-S oxidoreductase, related to NifB/MoaA family [ 99.12
PRK07379 400 coproporphyrinogen III oxidase; Provisional 99.11
PRK05904353 coproporphyrinogen III oxidase; Provisional 99.1
PRK08629 433 coproporphyrinogen III oxidase; Provisional 99.09
COG1964 475 Predicted Fe-S oxidoreductases [General function p 99.08
PRK09058 449 coproporphyrinogen III oxidase; Provisional 99.07
PRK06582 390 coproporphyrinogen III oxidase; Provisional 99.07
PRK14333448 (dimethylallyl)adenosine tRNA methylthiotransferas 99.07
PRK07360371 FO synthase subunit 2; Reviewed 99.06
PRK09057 380 coproporphyrinogen III oxidase; Provisional 99.05
PRK08445348 hypothetical protein; Provisional 99.04
PRK06294 370 coproporphyrinogen III oxidase; Provisional 99.01
PRK08898 394 coproporphyrinogen III oxidase; Provisional 98.98
PRK00955620 hypothetical protein; Provisional 98.98
PRK08444353 hypothetical protein; Provisional 98.96
COG0502335 BioB Biotin synthase and related enzymes [Coenzyme 98.91
PTZ00413398 lipoate synthase; Provisional 98.89
PRK05927350 hypothetical protein; Provisional 98.88
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 98.88
COG1533297 SplB DNA repair photolyase [DNA replication, recom 98.87
PRK01254707 hypothetical protein; Provisional 98.83
COG1032490 Fe-S oxidoreductase [Energy production and convers 98.78
COG1856275 Uncharacterized homolog of biotin synthetase [Func 98.7
PRK05926370 hypothetical protein; Provisional 98.7
PRK09234843 fbiC FO synthase; Reviewed 98.7
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 98.61
TIGR01211 522 ELP3 histone acetyltransferase, ELP3 family. The S 98.58
PRK09234 843 fbiC FO synthase; Reviewed 98.57
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 98.44
COG0635 416 HemN Coproporphyrinogen III oxidase and related Fe 98.26
COG1243 515 ELP3 Histone acetyltransferase [Transcription / Ch 98.21
COG0320306 LipA Lipoate synthase [Coenzyme metabolism] 98.2
COG1244358 Predicted Fe-S oxidoreductase [General function pr 98.19
COG2516339 Biotin synthase-related enzyme [General function p 97.97
KOG1160601 consensus Fe-S oxidoreductase [Energy production a 97.85
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 97.69
KOG2672360 consensus Lipoate synthase [Coenzyme transport and 97.61
COG1242312 Predicted Fe-S oxidoreductase [General function pr 97.5
COG1031560 Uncharacterized Fe-S oxidoreductase [Energy produc 97.23
COG4277404 Predicted DNA-binding protein with the Helix-hairp 97.12
KOG2900380 consensus Biotin synthase [Coenzyme transport and 96.28
KOG2492552 consensus CDK5 activator-binding protein [Signal t 95.57
KOG4355547 consensus Predicted Fe-S oxidoreductase [General f 95.11
PF04551359 GcpE: GcpE protein; InterPro: IPR004588 This prote 87.25
TIGR00612346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 86.35
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-45  Score=335.22  Aligned_cols=254  Identities=43%  Similarity=0.770  Sum_probs=234.3

Q ss_pred             cCCCCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc----
Q 022752            2 DCQNGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL----   77 (292)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~----   77 (292)
                      .+.||..+|+|+||++.              |.++++|++.||+++|.||..+..+..+++++.|+++++..+.+.    
T Consensus        89 ~l~DG~~IEtVli~~~~--------------r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~  154 (371)
T PRK14461         89 RLPDGAVVETVLMIYPD--------------RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAM  154 (371)
T ss_pred             EcCCCCEEEEEEEecCC--------------CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhc
Confidence            36799999999999864              389999999999999999999999999999999999999765321    


Q ss_pred             ------------CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEe
Q 022752           78 ------------SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL  144 (292)
Q Consensus        78 ------------~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSl  144 (292)
                                  ..+.+|+|.|+||||+||+.+.+.++.+.+. |++++..+++|+|.|..+.+.+++++...+.++|||
T Consensus       155 ~~~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSL  234 (371)
T PRK14461        155 GAAISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISL  234 (371)
T ss_pred             ccccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEe
Confidence                        2378999999999999999999999999876 888989999999999999999999877678999999


Q ss_pred             cCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeEEEEEEEeCCCCChHHHHHHHHHHHhhC------CcEEEEEec
Q 022752          145 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF------QVVVNLIPF  218 (292)
Q Consensus       145 d~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v~i~~vl~~g~nd~~~~l~~l~~~l~~~------~~~v~l~p~  218 (292)
                      +|++++.|.+++|.++.+++++++++++.|.++.+.++++++++++|+||+.++..+|+++++.+      .+.|+++||
T Consensus       235 HA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~  314 (371)
T PRK14461        235 HAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPW  314 (371)
T ss_pred             CCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999998      678999999


Q ss_pred             CCCCCCCCcCCCcHHHHHHHHHHHHhcCCeEEEeecccccccccccccccccC
Q 022752          219 NPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNL  271 (292)
Q Consensus       219 ~p~~~~~~~~~~~~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~  271 (292)
                      ||+ +...|..|+.+++..|+++|+ +.|+.+++|..+|.||.++|||+..+|
T Consensus       315 Np~-~~~~~~~ps~~~i~~F~~~L~-~~gi~vtiR~s~G~DI~AACGQL~~~~  365 (371)
T PRK14461        315 NPV-PGTPLGRSERERVTTFQRILT-DYGIPCTVRVERGVEIAAACGQLAGRH  365 (371)
T ss_pred             CCC-CCCCCCCCCHHHHHHHHHHHH-HCCceEEEeCCCCcChhhcCcccccCC
Confidence            998 466899999999999999999 899999999999999999999997644

>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00048 radical SAM enzyme, Cfr family Back     alignment and domain information
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB Back     alignment and domain information
>PRK13762 tRNA-modifying enzyme; Provisional Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>PLN02951 Molybderin biosynthesis protein CNX2 Back     alignment and domain information
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>COG0731 Fe-S oxidoreductases [Energy production and conversion] Back     alignment and domain information
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional Back     alignment and domain information
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 Back     alignment and domain information
>PRK13758 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] Back     alignment and domain information
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>PRK13745 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>TIGR00238 KamA family protein Back     alignment and domain information
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] Back     alignment and domain information
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Back     alignment and domain information
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase Back     alignment and domain information
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation Back     alignment and domain information
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>cd01335 Radical_SAM Radical SAM superfamily Back     alignment and domain information
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A Back     alignment and domain information
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional Back     alignment and domain information
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>PRK05799 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK09249 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK13347 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>PRK06267 hypothetical protein; Provisional Back     alignment and domain information
>PRK08446 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK05660 HemN family oxidoreductase; Provisional Back     alignment and domain information
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>PRK08207 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR00089 RNA modification enzyme, MiaB family Back     alignment and domain information
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK05628 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK08599 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08208 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PLN02428 lipoic acid synthase Back     alignment and domain information
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01210 conserved hypothetical protein TIGR01210 Back     alignment and domain information
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] Back     alignment and domain information
>PRK07379 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08629 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>PRK09058 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK06582 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>PRK09057 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PRK06294 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08898 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK00955 hypothetical protein; Provisional Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] Back     alignment and domain information
>PTZ00413 lipoate synthase; Provisional Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK01254 hypothetical protein; Provisional Back     alignment and domain information
>COG1032 Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>PRK05926 hypothetical protein; Provisional Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] Back     alignment and domain information
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG2516 Biotin synthase-related enzyme [General function prediction only] Back     alignment and domain information
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] Back     alignment and domain information
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
3rf9_A404 X-Ray Structure Of Rlmn From Escherichia Coli Lengt 3e-50
3rfa_A404 X-Ray Structure Of Rlmn From Escherichia Coli In Co 4e-49
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli Length = 404 Back     alignment and structure 
Iteration: 1

 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 108/259 (41%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 29  PGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRLSN--------- 79
           P   R+TLC+SSQVGC + C FC+T   GF  NL   EI+ Q+  A+++           
Sbjct: 110 PEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP 169
Query: 80  IRNVVFMGMGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL 138
           I NVV MGMGEPL N   +V A+ IM     F +S +R+T+ST G+V A++K   D+  +
Sbjct: 170 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDV 228
Query: 139 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDE 195
            LA+SLHAP  ++R +I+P  + + +E  + A++ Y + S   Q ++ IEY+MLD VND 
Sbjct: 229 ALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDG 288
Query: 196 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 255
            +HAHQL +LL+     +NLIP+NP       R SS+ ++  F K+L  SY   T VRK 
Sbjct: 289 TEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKT 346
Query: 256 MGQDISGACGQLVVNLPDK 274
            G DI  ACGQL  ++ D+
Sbjct: 347 RGDDIDAACGQLAGDVIDR 365
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 1e-118
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Length = 404 Back     alignment and structure
 Score =  343 bits (882), Expect = e-118
 Identities = 109/282 (38%), Positives = 159/282 (56%), Gaps = 30/282 (10%)

Query: 6   GGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSG 65
              VE V +  D               R+TLC+SSQVGC + C FC+T   GF  NL   
Sbjct: 101 DQRVETVYIPEDD--------------RATLCVSSQVGCALECKFCSTAQQGFNRNLRVS 146

Query: 66  EIVEQLVHASRLSN---------IRNVVFMGMGEPLNNYAALVEAVRIMT-GLPFQVSPK 115
           EI+ Q+  A+++           I NVV MGMGEPL N   +V A+ IM     F +S +
Sbjct: 147 EIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKR 206

Query: 116 RITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 175
           R+T+ST G+V A++K    +  + LA+SLHAP  ++R +I+P  + + +E  + A++ Y 
Sbjct: 207 RVTLSTSGVVPALDKLGDMID-VALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYL 265

Query: 176 KNS---QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSD 232
           + S   Q ++ IEY+MLD VND  +HAHQL +LL+     +NLIP+NP    + +  SS+
Sbjct: 266 EKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPG-APYGRSSN 324

Query: 233 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 274
            ++  F K+L  SY   T VRK  G DI  ACGQL  ++ D+
Sbjct: 325 SRIDRFSKVLM-SYGFTTIVRKTRGDDIDAACGQLAGDVIDR 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 100.0
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 99.95
2yx0_A342 Radical SAM enzyme; predicted tRNA modification en 99.93
1tv8_A340 MOAA, molybdenum cofactor biosynthesis protein A; 99.93
2z2u_A311 UPF0026 protein MJ0257; metal binding protein; 2.4 99.92
3can_A182 Pyruvate-formate lyase-activating enzyme; structur 99.87
2a5h_A416 L-lysine 2,3-aminomutase; radical SAM, four-iron-f 99.85
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 99.83
1r30_A369 Biotin synthase; SAM radical protein, TIM barrel, 99.74
3t7v_A350 Methylornithine synthase PYLB; TIM-barrel fold, mu 99.72
2qgq_A304 Protein TM_1862; alpha-beta protein, structural ge 99.63
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 99.47
4fhd_A368 Spore photoproduct lyase; partial TIM-barrel, DNA 98.5
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 94.73
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 87.25
3noy_A366 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 85.84
3p14_A 424 L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus 80.48
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-44  Score=335.58  Aligned_cols=253  Identities=43%  Similarity=0.743  Sum_probs=213.1

Q ss_pred             CCCeEEEEEeeecCCCCCCCCCCCCCCCceEEEEEcCCCCCcCCcCcCCCCCCCcCCCCHHHHHHHHHHhhcc-------
Q 022752            5 NGGFVEAVIMRYDSSLGKYNGKPRPGGPRSTLCISSQVGCKMGCNFCATGTMGFKSNLSSGEIVEQLVHASRL-------   77 (292)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~l~is~t~gCNl~C~yC~~~~~~~~~~~~~eei~~~i~~~~~~-------   77 (292)
                      ||..+|+|+||++.              |.++++|++.|||++|.||+++.....+.++++|+++++......       
T Consensus       100 dg~~iEtV~i~~~~--------------r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~  165 (404)
T 3rfa_A          100 GDQRVETVYIPEDD--------------RATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVT  165 (404)
T ss_dssp             TTEEEEEEEEECSS--------------CEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHH
T ss_pred             CCceEEEEEEecCC--------------CceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccc
Confidence            79999999999864              489999999999999999999877777889999999998875432       


Q ss_pred             --CCcceEEEecCCccccCHHHHHHHHHHHhCC-CCCCCCCeEEEEcCCchhhHHHHhhhCCCceEEEEecCCChHHHhh
Q 022752           78 --SNIRNVVFMGMGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQ  154 (292)
Q Consensus        78 --~~~~~I~fsG~GEPll~~~~i~ell~~~~~~-g~~~~~~~i~l~TNG~~~~~~~l~~~~~~~~l~iSld~~~~~~~~~  154 (292)
                        .++..|+|+|+||||+|++++.++++.+++. |++++..+++++|||+.+.+.++++.. .+.+.||||+++++.|+.
T Consensus       166 gg~~i~~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~-d~~LaiSLka~d~e~~~~  244 (404)
T 3rfa_A          166 GQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDEIRDE  244 (404)
T ss_dssp             SSCSCSEEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHC-CCEEEEECCCSSHHHHHH
T ss_pred             cCCCccEEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhh-cceEEecccCCCHHHHHH
Confidence              2478899996699999999999999999995 877777799999999987777888773 567889999999999999


Q ss_pred             hcCcccCccHHHHHHHHHHHHHhhCC---eEEEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCcCCCc
Q 022752          155 IMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS  231 (292)
Q Consensus       155 i~~~~~~~~~~~vi~~l~~~~~~~~~---~v~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~~~~~~~~~~~  231 (292)
                      ++|.+++++++++++++++++.+.+.   ++++++++++|+||+.+++.+++++++.+++.|+++||+|. +...+.+|+
T Consensus       245 i~pv~~~~~le~vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~-~~~~~~~ps  323 (404)
T 3rfa_A          245 IVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPF-PGAPYGRSS  323 (404)
T ss_dssp             HSGGGGTSCHHHHHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCC-TTCCCCBCC
T ss_pred             hcCCccCCCHHHHHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCC-CCCCCCCCC
Confidence            99888889999999999888888777   89999999999999999999999999999888999999998 467899999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEeecccccccccccccccccCcCc
Q 022752          232 DDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK  274 (292)
Q Consensus       232 ~e~l~~~~~~l~~~~g~~v~ir~~~g~~~~~~c~~~~~~~~~~  274 (292)
                      .+++++|+++++ ++|+.+.+|..+|.||.++|||+..+.-|+
T Consensus       324 ~e~i~~f~~iL~-~~Gi~vtiR~~~G~di~aaCGQL~~~~~~~  365 (404)
T 3rfa_A          324 NSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAACGQLAGDVIDR  365 (404)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEECCCCCC----------------
T ss_pred             HHHHHHHHHHHH-HcCCcEEEcCCCCcccccccccchhhhhhh
Confidence            999999999999 799999999999999999999998776554
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Back     alignment and structure
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Back     alignment and structure
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Back     alignment and structure
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Back     alignment and structure
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Back     alignment and structure
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1tv8a_327 Molybdenum cofactor biosynthesis protein A MoaA {S 99.84
d1r30a_312 Biotin synthase {Escherichia coli [TaxId: 562]} 99.27
d1olta_ 441 Oxygen-independent coproporphyrinogen III oxidase 98.89
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.84  E-value=5.8e-19  Score=157.09  Aligned_cols=175  Identities=15%  Similarity=0.206  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCCcCCcCcCCCCCC--------CcCCCCHHHHHHHHHHhhccCCcceEEEecCCccccCHHHHHHHHHHH
Q 022752           34 STLCISSQVGCKMGCNFCATGTMG--------FKSNLSSGEIVEQLVHASRLSNIRNVVFMGMGEPLNNYAALVEAVRIM  105 (292)
Q Consensus        34 ~~l~is~t~gCNl~C~yC~~~~~~--------~~~~~~~eei~~~i~~~~~~~~~~~I~fsG~GEPll~~~~i~ell~~~  105 (292)
                      ..|.|++|..||++|.||+.+...        ....|+.+++.+.+.+... .++..+.|+| |||+++++ +.+++.++
T Consensus        12 ~~l~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~-~g~~~v~~~G-GEp~l~~~-~~e~i~~~   88 (327)
T d1tv8a_          12 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE-LGVKKIRITG-GEPLMRRD-LDVLIAKL   88 (327)
T ss_dssp             CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH-TTCCEEEEES-SCGGGSTT-HHHHHHHH
T ss_pred             CcEEEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHH-cCCeEEEeCC-Cccccccc-HHHHHHHH
Confidence            457888899999999999864211        1234788887776666554 4788999999 99999865 56777777


Q ss_pred             hCCCCCCCCCeEEEEcCCchhh---HHHHhhhCCCceEEEEecCCChHHHhhhcCcccCccHHHHHHHHHHHHHhhCCeE
Q 022752          106 TGLPFQVSPKRITVSTVGIVHA---INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI  182 (292)
Q Consensus       106 ~~~g~~~~~~~i~l~TNG~~~~---~~~l~~~~~~~~l~iSld~~~~~~~~~i~~~~~~~~~~~vi~~l~~~~~~~~~~v  182 (292)
                      .+.+    .....+.|||.+..   +.++.+.+ ...+.||+++.+++.+..+++.  .+.++.+++++ +.+.+.+..+
T Consensus        89 ~~~~----~~~~~~~Tng~ll~~~~~~~l~~~g-~~~i~iSldg~~~e~~~~~rg~--~g~~~~~~~~~-~~~~~~g~~~  160 (327)
T d1tv8a_          89 NQID----GIEDIGLTTNGLLLKKHGQKLYDAG-LRRINVSLDAIDDTLFQSINNR--NIKATTILEQI-DYATSIGLNV  160 (327)
T ss_dssp             TTCT----TCCEEEEEECSTTHHHHHHHHHHHT-CCEEEEECCCSSHHHHHHHHSS--CCCHHHHHHHH-HHHHHTTCEE
T ss_pred             hhhc----cccccccccccccchhHHHHHHHcC-CCEEeeecccCCHHHhhhheee--ccccchhhhHH-HHHHHcCCCc
Confidence            6653    14555667765432   45666665 3568899999999999988653  46799999999 6677889999


Q ss_pred             EEEEEEeCCCCChHHHHHHHHHHHhhCCcEEEEEecCCC
Q 022752          183 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI  221 (292)
Q Consensus       183 ~i~~vl~~g~nd~~~~l~~l~~~l~~~~~~v~l~p~~p~  221 (292)
                      .++++++++.|.  .++.++.+++...++.+.+.++.+.
T Consensus       161 ~~~~~v~~~~n~--~~~~~~~~~~~~~~~~~~~~~~~~~  197 (327)
T d1tv8a_         161 KVNVVIQKGIND--DQIIPMLEYFKDKHIEIRFIEFMDV  197 (327)
T ss_dssp             EEEEEECTTTTG--GGHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             ceeEEEecCccc--cccHHHHHHHHhhccccceeeeecc
Confidence            999999887554  4678888999888877666655443
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure