Citrus Sinensis ID: 022850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccEEEcccccccccEEEEEcccccccccEEEEEEccccEEEEEEEccccccccccccccEEEEEEcccccccEEEEEEEcccEEcccccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEccccccEEEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEccccccccEEEEEcHHHEEEccccHHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGDDKSTIVMASrerdrdrellipvadsgdesskpssssssshhagrETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHfvdgffspiyaqLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISaaispgmysvfnlpyyisvGRQFIFCITFVITDQNTQAFKEVAiirhprigeyaFGFITSSVVlqnysgeeelccvyvptnhlyigdiflintkdvirpnlsvrEGIEIVVSGGMSMPQILSTLetrmpldgsrpdrr
Flexible Loop (DISEMBL)
mgddkstivmasrerdrdrellipvadsgdesskpssssssshhagreTFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVvsggmsmpqilstletrmpldgsrpdrr
Low Complexity Region (SEG)
MGDDKSTIVMASRERDRDRELLIPVADSGDEsskpsssssssHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR
Disordered region (IsUnstruct)
*************************************************FSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGM***********************
Disordered Region (DISOPRED)
******************************************************RSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCI***********FKEVAIIRHPRIGEYAFGFITSSVV****SGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGM***********************
Disordered Region (DISEMBL)
MGDDKSTIVMASRERDRDRELLIPVA************************SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMP*********
Disordered Region (DISPRO)
**************RDRDRELLIPV*********************RETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMP********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
357520997	265	hypothetical protein MTR_8g103420 [Medic	0.903	0.992	0.781	1e-126
388492226	265	unknown [Medicago truncatula]	0.903	0.992	0.778	1e-125
217073912	265	unknown [Medicago truncatula]	0.903	0.992	0.774	1e-125
224143553	264	predicted protein [Populus trichocarpa]	0.890	0.981	0.793	1e-121
225445216	266	PREDICTED: uncharacterized protein LOC10	0.896	0.981	0.799	1e-119
449443151	265	PREDICTED: uncharacterized protein LOC10	0.896	0.984	0.778	1e-118
357520991	270	Cov1 [Medicago truncatula] gi|355524806|	0.896	0.966	0.761	1e-118
224119792	254	predicted protein [Populus trichocarpa]	0.848	0.972	0.819	1e-118
388517155	270	unknown [Medicago truncatula]	0.896	0.966	0.750	1e-116
449464664	267	PREDICTED: uncharacterized protein LOC10	0.903	0.985	0.744	1e-115

>gi|357520997|ref|XP_003630787.1| hypothetical protein MTR_8g103420 [Medicago truncatula] gi|355524809|gb|AET05263.1| hypothetical protein MTR_8g103420 [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/293 (78%), Positives = 247/293 (84%), Gaps = 30/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDES--SKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDKS   +    RDRDRELLIPVA+SGD++  S+P +SSSS HH+GRETFSKVV+SWA
Sbjct: 1   MVDDKSPSTVIG-NRDRDRELLIPVANSGDDTDASRPLASSSSMHHSGRETFSKVVQSWA 59

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL+GV
Sbjct: 60  SKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSITFIFLVGV 119

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISP                    
Sbjct: 120 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISP-------------------- 159

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                  DQN+QAFKEVAIIRHPR+GEYAFGFITSSVVLQ+YSG+EELCCVYVPTNHLYI
Sbjct: 160 -------DQNSQAFKEVAIIRHPRVGEYAFGFITSSVVLQSYSGDEELCCVYVPTNHLYI 212

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR 291
           GDIFL+NTKDVIRP LSVREGIEIVVSGGMSMPQILSTLE+R+P   SRPDRR
Sbjct: 213 GDIFLVNTKDVIRPTLSVREGIEIVVSGGMSMPQILSTLESRVPAQISRPDRR 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492226|gb|AFK34179.1| unknown [Medicago truncatula]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/293 (77%), Positives = 246/293 (83%), Gaps = 30/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDES--SKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDKS   +    RDRDRELLIPVA+SGD++  S+P +SSSS HH+GRETFSKVV+SWA
Sbjct: 1   MVDDKSPSTVIG-NRDRDRELLIPVANSGDDTDASRPLASSSSMHHSGRETFSKVVQSWA 59

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL+GV
Sbjct: 60  SKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSITFIFLVGV 119

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISP                    
Sbjct: 120 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISP-------------------- 159

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                  DQN+QAFKEVAIIRHPR+GEYAFGFITSSVVLQ+YSG+EELCCVYVPTNHLYI
Sbjct: 160 -------DQNSQAFKEVAIIRHPRVGEYAFGFITSSVVLQSYSGDEELCCVYVPTNHLYI 212

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR 291
           GDIFL+NTKDVIRP LSVREGIEIVVSGGMSMPQIL TLE+R+P   SRPDRR
Sbjct: 213 GDIFLVNTKDVIRPTLSVREGIEIVVSGGMSMPQILPTLESRVPAQISRPDRR 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073912|gb|ACJ85316.1| unknown [Medicago truncatula]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/293 (77%), Positives = 246/293 (83%), Gaps = 30/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDES--SKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDKS   +    RDRDRELLIPVA+SGD++  S+P +SSSS HH+GRETFSKVV+SWA
Sbjct: 1   MVDDKSPSTVIG-NRDRDRELLIPVANSGDDTDASRPLASSSSMHHSGRETFSKVVQSWA 59

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL+GV
Sbjct: 60  SKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSITFIFLVGV 119

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISP                    
Sbjct: 120 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISP-------------------- 159

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                  DQN+QAFKEVAIIRHPR+GEYAFGFITSSVVLQ+YSG+EELCCVYVPTNHLYI
Sbjct: 160 -------DQNSQAFKEVAIIRHPRVGEYAFGFITSSVVLQSYSGDEELCCVYVPTNHLYI 212

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR 291
           GDIFL+NTKDVIRP LSVR+GIEIVVSGGMSMPQ LSTLE+R+P   SRPDRR
Sbjct: 213 GDIFLVNTKDVIRPTLSVRKGIEIVVSGGMSMPQTLSTLESRVPAQISRPDRR 265

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143553|ref|XP_002324995.1| predicted protein [Populus trichocarpa] gi|222866429|gb|EEF03560.1| predicted protein [Populus trichocarpa]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 246/291 (84%), Gaps = 32/291 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDE--SSKPSSSSSSSHHA---GRETFSKVVR 55
           MGD+KS IVM SR+RDRDRELLIPVAD+ D   +SKPSSSSSSS  +   GRETF K VR
Sbjct: 1   MGDEKSAIVMTSRDRDRDRELLIPVADTPDLDIASKPSSSSSSSSSSHHSGRETFCKFVR 60

Query: 56  SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFL 115
           SWASKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS+TFIFL
Sbjct: 61  SWASKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSLTFIFL 120

Query: 116 IGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQ 175
           +GVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISP                 
Sbjct: 121 VGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISP----------------- 163

Query: 176 FIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNH 235
                     DQNTQAFKEVAIIRHPRIGEYAFGFITS+V LQNYSGEEELCCVYVPTNH
Sbjct: 164 ----------DQNTQAFKEVAIIRHPRIGEYAFGFITSTVTLQNYSGEEELCCVYVPTNH 213

Query: 236 LYIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGS 286
           LYIGDIFL+ TKDVIRPNLSVREGIEIVVSGGMSMPQ+LSTL++ + +D S
Sbjct: 214 LYIGDIFLVTTKDVIRPNLSVREGIEIVVSGGMSMPQVLSTLDSSISVDRS 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445216|ref|XP_002284354.1| PREDICTED: uncharacterized protein LOC100262854 [Vitis vinifera] gi|297738813|emb|CBI28058.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 254/294 (86%), Gaps = 33/294 (11%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADS---GDESSKPSSSSSSSHHAGRETFSKVVRSW 57
           MGD+KS+IVMA+RERDR  ELLIPV+DS   GD SSKPSSS+SSSHH GRETF KVVRSW
Sbjct: 1   MGDEKSSIVMATRERDR--ELLIPVSDSVNDGDASSKPSSSASSSHHPGRETFYKVVRSW 58

Query: 58  ASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIG 117
           ASKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIYAQLGI+IFGLGFITS+TFIFL+G
Sbjct: 59  ASKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFITSITFIFLVG 118

Query: 118 VFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFI 177
           VFMSSWLGASVL LGEWFIKRMPFVRHIY+ASKQISAAISP                   
Sbjct: 119 VFMSSWLGASVLGLGEWFIKRMPFVRHIYSASKQISAAISP------------------- 159

Query: 178 FCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLY 237
                   DQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQ+Y+GEEELCCVYVPTNHLY
Sbjct: 160 --------DQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQSYTGEEELCCVYVPTNHLY 211

Query: 238 IGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRM-PLDGSRPDR 290
           IGDIFL+N KDVIRPNLSVREGIEIVVSGGMSMPQILST+++R+  +D SRP+R
Sbjct: 212 IGDIFLVNCKDVIRPNLSVREGIEIVVSGGMSMPQILSTVDSRITTVDRSRPER 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443151|ref|XP_004139344.1| PREDICTED: uncharacterized protein LOC101208869 [Cucumis sativus] gi|449516298|ref|XP_004165184.1| PREDICTED: uncharacterized protein LOC101229165 [Cucumis sativus]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/293 (77%), Positives = 249/293 (84%), Gaps = 32/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSG--DESSKPSSSSSSSHHAGRETFSKVVRSWA 58
           MGD+KS I MASRERDR  ELLIPVA+S   + S+KPSSSSSSSHH+GRETFSKVVRSWA
Sbjct: 1   MGDEKSAIAMASRERDR--ELLIPVAESAIDEASAKPSSSSSSSHHSGRETFSKVVRSWA 58

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVILFPIA+TFYITWWFI FVDGFFSPIYA LGI+IFGLGF+TS+TFIFL+GV
Sbjct: 59  SKKFMTGCVILFPIAITFYITWWFIRFVDGFFSPIYAHLGINIFGLGFVTSITFIFLVGV 118

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           FMSSWLGASVL LGEWFIKRMPFVRHIYNASKQIS+AIS                     
Sbjct: 119 FMSSWLGASVLGLGEWFIKRMPFVRHIYNASKQISSAIS--------------------- 157

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                 +DQN+QAFKEVAIIRHPRIGEYAFGFITSSVVLQ+YSGEEELCCVYVPTNHLYI
Sbjct: 158 ------SDQNSQAFKEVAIIRHPRIGEYAFGFITSSVVLQSYSGEEELCCVYVPTNHLYI 211

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETR-MPLDGSRPDR 290
           GD+FL++TKDVIRPNLSVREGIEIVVSGGMSMPQILST+ +  M +D SR +R
Sbjct: 212 GDVFLVHTKDVIRPNLSVREGIEIVVSGGMSMPQILSTMNSEIMTIDRSRLER 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520991|ref|XP_003630784.1| Cov1 [Medicago truncatula] gi|355524806|gb|AET05260.1| Cov1 [Medicago truncatula]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/293 (76%), Positives = 242/293 (82%), Gaps = 32/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSS--HHAGRETFSKVVRSWA 58
           M D+KS+  +      RDRELLIPVA+SGD S+    SSSSS  HHAGRETFSKVV+SWA
Sbjct: 8   MVDEKSSSTVIG---GRDRELLIPVANSGDHSNASKPSSSSSSVHHAGRETFSKVVQSWA 64

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIY  LGI+IFGLGFITS+TFIFLIG+
Sbjct: 65  SKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYVHLGINIFGLGFITSITFIFLIGI 124

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           FMSSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISP                    
Sbjct: 125 FMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISP-------------------- 164

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                  DQN+QAFKEVAIIRHPR+GEYA GFITSSVVLQ YSG+EELCCVYVPTNHLYI
Sbjct: 165 -------DQNSQAFKEVAIIRHPRVGEYALGFITSSVVLQTYSGDEELCCVYVPTNHLYI 217

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR 291
           GDIFL+NTKDVIRPNLSVREGIEIVVSGGMSMPQILSTL++ +P++ SRPDRR
Sbjct: 218 GDIFLVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDSHVPVEISRPDRR 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119792|ref|XP_002331162.1| predicted protein [Populus trichocarpa] gi|222873245|gb|EEF10376.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/277 (81%), Positives = 240/277 (86%), Gaps = 30/277 (10%)

Query: 17  RDRELLIPVADSGDE--SSKPSSSS-SSSHHAGRETFSKVVRSWASKKFMTGCVILFPIA 73
           RDRELLIPVADS D   +SKPSSSS SSSHH+GRETF KVVRSWASKKFMTGCVILFPIA
Sbjct: 4   RDRELLIPVADSPDVEVASKPSSSSSSSSHHSGRETFYKVVRSWASKKFMTGCVILFPIA 63

Query: 74  VTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGE 133
           +TFYITWWF+HFVDGFFSPIYA LGIDIFGLGFITS+TFIFL+GVFMSSWLGASVLSLGE
Sbjct: 64  ITFYITWWFVHFVDGFFSPIYAHLGIDIFGLGFITSITFIFLVGVFMSSWLGASVLSLGE 123

Query: 134 WFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFK 193
           WFIKRMPFVRHIYNASKQISAAISP                           DQNTQAFK
Sbjct: 124 WFIKRMPFVRHIYNASKQISAAISP---------------------------DQNTQAFK 156

Query: 194 EVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPN 253
           EVAIIRHPRIGEYAFGFITSSV+LQNYSGEEELCCVYVPTNHLYIGDIFL+NTKDVIRPN
Sbjct: 157 EVAIIRHPRIGEYAFGFITSSVILQNYSGEEELCCVYVPTNHLYIGDIFLVNTKDVIRPN 216

Query: 254 LSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDR 290
           LSVREGIEIVVSGGMSMPQILSTL++R+ +D SR +R
Sbjct: 217 LSVREGIEIVVSGGMSMPQILSTLDSRISVDRSRSER 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517155|gb|AFK46639.1| unknown [Medicago truncatula]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/293 (75%), Positives = 240/293 (81%), Gaps = 32/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADSGDESSKPSSSSSSS--HHAGRETFSKVVRSWA 58
           M D+KS+  +      RDRELLIPVA+SGD S+    SSSSS  HHAGRETFSKVV+SWA
Sbjct: 8   MVDEKSSSTVIG---GRDRELLIPVANSGDHSNASKPSSSSSSVHHAGRETFSKVVQSWA 64

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGCVILFPIA+TFYITWWFIHFVDGFFSPIY  LGI+IFGLGFIT +TFIFLIG+
Sbjct: 65  SKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYVHLGINIFGLGFITFITFIFLIGI 124

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           F+SSWLGASVL LGEWFIKRMP VRHIYNASKQISAAISP                    
Sbjct: 125 FVSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISP-------------------- 164

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                  DQN+QAFKEVAIIRHPR+GEYA GFITSSVVLQ YSG+EELCCVYVPTNHLYI
Sbjct: 165 -------DQNSQAFKEVAIIRHPRVGEYALGFITSSVVLQTYSGDEELCCVYVPTNHLYI 217

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRMPLDGSRPDRR 291
           GDIF +NTKDVIRPNLSVREGIEIVVSGGMSMPQILSTL++ +P++ SRPDRR
Sbjct: 218 GDIFFVNTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDSHVPVEISRPDRR 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464664|ref|XP_004150049.1| PREDICTED: uncharacterized protein LOC101222032 [Cucumis sativus]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/293 (74%), Positives = 238/293 (81%), Gaps = 30/293 (10%)

Query: 1   MGDDKSTIVMASRERDRDRELLIPVADS--GDESSKPSSSSSSSHHAGRETFSKVVRSWA 58
           M DDK+ I +A+R+R+RD ELLIPVA S   D S KPSSSSSSS   GRETF +V RSWA
Sbjct: 1   MADDKAPITIATRDRERDIELLIPVAASPKDDASCKPSSSSSSSQQTGRETFYRVFRSWA 60

Query: 59  SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGV 118
           SKKFMTGC ILFPIA+TFYITWWFIHFVDGFFSPIYAQLGIDIFGLGF TSVTFIFL+GV
Sbjct: 61  SKKFMTGCCILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFATSVTFIFLVGV 120

Query: 119 FMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIF 178
           FMSSWLGASVL+LGEWFIKRMPFVRHIYNASKQIS+AISP                    
Sbjct: 121 FMSSWLGASVLALGEWFIKRMPFVRHIYNASKQISSAISP-------------------- 160

Query: 179 CITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSGEEELCCVYVPTNHLYI 238
                  DQNT AFKEVAIIRHPR+GEYAFGFITS+V LQ+YSGEEELCCVYVPTNHLYI
Sbjct: 161 -------DQNTNAFKEVAIIRHPRVGEYAFGFITSTVTLQSYSGEEELCCVYVPTNHLYI 213

Query: 239 GDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTLETRM-PLDGSRPDR 290
           GD+FL+N++DV RPNLSVREGIEIVVSGGMSMPQILS L++   P+D  R  R
Sbjct: 214 GDVFLVNSQDVTRPNLSVREGIEIVVSGGMSMPQILSILDSDFRPIDSRRLTR 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.683	0.742	0.613	1.6e-61
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.652	0.742	0.613	2.8e-57
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.364	0.406	0.754	1.1e-41
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.357	0.492	0.321	1.1e-24
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.357	0.492	0.321	1.1e-24
UNIPROTKB|Q0C0Q5	237	HNE_1988 "Putative uncharacter	0.333	0.409	0.288	8.1e-15
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.426	0.553	0.297	2.4e-12
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.426	0.553	0.297	2.4e-12
UNIPROTKB|Q3Z7T7	214	DET0989 "Putative uncharacteri	0.518	0.705	0.203	8.8e-10
TIGR_CMR|DET_0989	214	DET_0989 "conserved hypothetic	0.518	0.705	0.203	8.8e-10

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 130/212 (61%), Positives = 147/212 (69%)

Query:     1 MGDDKSTIVMASRERDRDRELLIPVADSGDEX-------XXXXXXXXXXHHAGRETFSKV 53
             MGD+K  IVMA+RERDR  ELLIPVADSGD+                  H +  ET S  
Sbjct:     1 MGDEKPVIVMANRERDR--ELLIPVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLF 58

Query:    54 VRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFI 113
             +R WASKKFMTGCVIL PIA+TFYITWWFIHFVDGFFSPIYAQLGI++FG GF+TS+ FI
Sbjct:    59 IRGWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFI 118

Query:   114 FLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYS-VFNLPYYIS- 171
             FL+GVFMSSWLGASVL+LGEWFIKRMPFVRHIYNASKQIS AISP   +  F     I  
Sbjct:   119 FLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRH 178

Query:   172 --VGRQFIFCITFVITDQNTQAFKEVAIIRHP 201
               VG      IT  +  QN    +E+  +  P
Sbjct:   179 PRVGEYAFGFITSTVVLQNYPTEEELCCVYVP 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 124/202 (61%), Positives = 138/202 (68%)

Query:    10 MASRERDRDRELLIPVADSGDEXX------XXXXXXXXXHHAGRETFSKVVRSWASKKFM 63
             MA+RERDR  ELLIPVAD GD+                 H +G ET S  +R WASKKFM
Sbjct:     1 MANRERDR--ELLIPVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFM 58

Query:    64 TGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSW 123
             TGCVIL PIAVTFY TWWFIHFVDGFFSPIYA LGI+IFG GF+TS+ FIFL+GVFMSSW
Sbjct:    59 TGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSW 118

Query:   124 LGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYS-VFNLPYYIS---VGRQFIFC 179
             LGASVL+LGEWFIKRMPFVRHIYNASKQIS AISP   +  F     I    VG      
Sbjct:   119 LGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGF 178

Query:   180 ITFVITDQNTQAFKEVAIIRHP 201
             IT  +  QN    +E+  +  P
Sbjct:   179 ITSTVVLQNYPTEEELCCVYVP 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 80/106 (75%), Positives = 92/106 (86%)

Query:    53 VVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTF 112
             V++SW SKKFMTG V+LFP+AVTF ITWWFI FVDGFFSPIY  LG+DIFGLGFITSV F
Sbjct:    44 VLQSWVSKKFMTGFVVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLF 103

Query:   113 IFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISP 158
              F +G+F SSWLG++V  LGE FI+RMPFV+HIY+ASKQIS AISP
Sbjct:   104 TFFVGIFASSWLGSTVFWLGEQFIRRMPFVKHIYSASKQISTAISP 149

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 36/112 (32%), Positives = 60/112 (53%)

Query:    45 AGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVD----GFFSPIYAQLGID 100
             AGRE    + +   +  F+TG  ++ P A+T YI +    F D    GFF+ I+   GID
Sbjct:     2 AGREEGRDIFKKLGNY-FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GID 57

Query:   101 IFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQI 152
             I GLG +T    + ++G+  ++++G  +L   E    ++P  R +Y  SKQ+
Sbjct:    58 IPGLGVLTVALLVPIVGMLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQL 109

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 36/112 (32%), Positives = 60/112 (53%)

Query:    45 AGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVD----GFFSPIYAQLGID 100
             AGRE    + +   +  F+TG  ++ P A+T YI +    F D    GFF+ I+   GID
Sbjct:     2 AGREEGRDIFKKLGNY-FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIF---GID 57

Query:   101 IFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQI 152
             I GLG +T    + ++G+  ++++G  +L   E    ++P  R +Y  SKQ+
Sbjct:    58 IPGLGVLTVALLVPIVGMLATNFIGRKILKKFEQLFIKIPVTRSLYKTSKQL 109

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C0Q5 HNE_1988 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 128 (50.1 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 30/104 (28%), Positives = 51/104 (49%)

Query:    56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIY-------AQLGIDIFGLGFIT 108
             +W   +F+ G +I  PI  TF I  + I+ +D    P+          L   + G G I 
Sbjct:    24 AWLRARFVAGMLIALPIVATFVILEFLINLIDSRVVPLLPPSLRPETYLDYAVPGFGLII 83

Query:   109 SVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQI 152
              + F+ L+G   +++LG   + L +  + R+P VR +Y+  KQI
Sbjct:    84 LILFLTLVGAVATNFLGKFFVDLTDRVLTRVPVVRSVYSVFKQI 127

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 167 (63.8 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 39/131 (29%), Positives = 65/131 (49%)

Query:    62 FMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQ-------LGIDIFGLGFITSVTFIF 114
             F+TG V++ P+ +T ++ W  + +VD F  P+          +GI++ G+G I  + F  
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   115 LIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGR 174
             ++G      +G S++   E  + RMP VR +Y+  KQIS  +       F     I   R
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFAQTERSFEQACLIQYPR 143

Query:   175 QFIFCITFVIT 185
             + I+ I FV T
Sbjct:   144 RGIWAIGFVST 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 167 (63.8 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 39/131 (29%), Positives = 65/131 (49%)

Query:    62 FMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQ-------LGIDIFGLGFITSVTFIF 114
             F+TG V++ P+ +T ++ W  + +VD F  P+          +GI++ G+G I  + F  
Sbjct:    24 FLTGIVVIAPVGLTIWLFWSVVGWVDSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTI 83

Query:   115 LIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGR 174
             ++G      +G S++   E  + RMP VR +Y+  KQIS  +       F     I   R
Sbjct:    84 VVGWIAKGIIGRSLIQYAEGVVDRMPVVRSVYSGIKQISETVFAQTERSFEQACLIQYPR 143

Query:   175 QFIFCITFVIT 185
             + I+ I FV T
Sbjct:   144 RGIWAIGFVST 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7T7 DET0989 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 152 (58.6 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 31/152 (20%), Positives = 68/152 (44%)

Query:    61 KFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIF-GLGFITSVTFIFLIGVF 119
             +F+TG   + PI     +  W  + +DG   P+        F GLG + ++  I+L+G+ 
Sbjct:    15 RFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFFFNWYFPGLGLLVTLVLIYLVGLI 74

Query:   120 MSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFC 179
             +S++ G  +L   +  + ++P    +YN++KQ+   +       F     +   R  +  
Sbjct:    75 LSNYFGKQILGWVDKILVKVPIFNQVYNSAKQVIETLGVSNKVSFKEAVMVEFPRTGMHS 134

Query:   180 ITFVITDQNTQAFKEVAIIRHPRIGEYAFGFI 211
             + F+  +    A +++ ++  P       GF+
Sbjct:   135 LAFITNETTNSAGEKLYLVYVPGSPNPTSGFL 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0989 DET_0989 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 152 (58.6 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 31/152 (20%), Positives = 68/152 (44%)

Query:    61 KFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIF-GLGFITSVTFIFLIGVF 119
             +F+TG   + PI     +  W  + +DG   P+        F GLG + ++  I+L+G+ 
Sbjct:    15 RFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFFFNWYFPGLGLLVTLVLIYLVGLI 74

Query:   120 MSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFC 179
             +S++ G  +L   +  + ++P    +YN++KQ+   +       F     +   R  +  
Sbjct:    75 LSNYFGKQILGWVDKILVKVPIFNQVYNSAKQVIETLGVSNKVSFKEAVMVEFPRTGMHS 134

Query:   180 ITFVITDQNTQAFKEVAIIRHPRIGEYAFGFI 211
             + F+  +    A +++ ++  P       GF+
Sbjct:   135 LAFITNETTNSAGEKLYLVYVPGSPNPTSGFL 166

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0020005701 hypothetical protein (265 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	2e-26
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	1e-23

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score =  103 bits (258), Expect = 2e-26
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 39/230 (16%)

Query: 60  KKFMTGCVILFPIAVTFYITWWFIHFVDGFFSP-------IYAQLGIDIFGLGFITSVTF 112
           K F+TG ++L P+A+T ++  W    +D F  P              +I GLG I ++  
Sbjct: 8   KYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIIL 67

Query: 113 IFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISV 172
           IFL+G    + +G S+LSLG+  ++R+P V+ IY ++KQ+                    
Sbjct: 68  IFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVET----------------- 110

Query: 173 GRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITS--SVVLQNYSGEEELCCVY 230
                      +    + +FK+V ++  PR G +A  F+T   +  L+   G   +  V+
Sbjct: 111 -----------LLSDQSGSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEG-RPMVAVF 158

Query: 231 VPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVVSGGMSMPQILSTLET 279
           VPT         L+  K+ I P +++V + ++ ++SGG+  P  L   + 
Sbjct: 159 VPTTPNPTSGFLLLVPKEDIVPLDMTVEDALKYIISGGVVAPDSLPAKDL 208

Length = 222

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score = 92.6 bits (231), Expect = 1e-23
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 29/129 (22%)

Query: 106 FITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFN 165
            I ++  IFL+G+   +++G  +LSLGE  + R+P VR IY++ KQ+   +         
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLG------- 53

Query: 166 LPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAFGFITSSVVLQNYSG-EE 224
                                   ++F++V ++ +PR G +A GF+T     +      E
Sbjct: 54  ---------------------DKKKSFRKVVLVEYPRPGLWAIGFVTGEDGGELPERLGE 92

Query: 225 ELCCVYVPT 233
           +L  V+VPT
Sbjct: 93  DLVAVFVPT 101

Predicted to be an integral membrane protein. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.96
PRK15350	88	type III secretion system protein SsaS; Provisiona	89.29
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	88.6
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	88.36
PRK06010	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	87.4
TIGR02120	399	GspF general secretion pathway protein F. This mem	86.78
TIGR01403	81	fliQ_rel_III type III secretion protein, HrpO fami	86.75
PRK12781	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	86.3
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	86.18
COG1987	89	FliQ Flagellar biosynthesis pathway, component Fli	82.62
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	82.34
COG1459	397	PulF Type II secretory pathway, component PulF [Ce	82.02
PRK15333	86	type III secretion system protein SpaQ; Provisiona	81.53
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	81.37

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.9e-52  Score=373.82  Aligned_cols=193  Identities=30%  Similarity=0.655  Sum_probs=174.5

Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhh-------hhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 022850           56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIY-------AQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASV  128 (291)
Q Consensus        56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~-------~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l  128 (291)
                      ..++|+|+|||++++|+++|+|+++|+++++|+++.|.+       .+++.+++|+|+++.+++++++|+++++.+|+++
T Consensus         4 ~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~l   83 (222)
T COG2928           4 KRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRSL   83 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            345688999999999999999999999999999999854       2346779999999999999999999999999999


Q ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeeecccccccceEEEEEcCCCCeeEE
Q 022850          129 LSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAF  208 (291)
Q Consensus       129 ~~~~E~~l~rIPlVk~IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~~~~~~~fk~VVlV~~P~~g~~~i  208 (291)
                      ++++|++|.|||++|+||+++||+++++.+                            +++.+||+||+|||||+|+|++
T Consensus        84 ~~~~d~~L~RiPlv~~IY~s~kqi~etll~----------------------------~~~~sfk~vvlVefP~~G~~~i  135 (222)
T COG2928          84 LSLGDSLLRRIPLVKSIYKSAKQVVETLLS----------------------------DQSGSFKQVVLVEFPRRGIWAI  135 (222)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHh----------------------------cCCccceeeEEEECCCCCcEEE
Confidence            999999999999999999999999999975                            3455999999999999999999


Q ss_pred             EEeccccc--ccccCCCcceEEEEecCCCC-CceeEEEEeCCCeecCCCCHHHHHHHHhhccccCCCccccc
Q 022850          209 GFITSSVV--LQNYSGEEELCCVYVPTNHL-YIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTL  277 (291)
Q Consensus       209 GFvT~~~~--~~~~~~~e~~v~VfVPtsp~-~sG~l~lV~~~dV~~lDmSveeAmk~viSgGv~~p~~~~~~  277 (291)
                      ||+|++..  .+. ..++++++||+||+|| |+||+.+||+||++++|||+|||+|+++|||+..|+.....
T Consensus       136 ~fvtg~~~~e~~~-~~~~~~v~VfvPTTPNPTsGfl~~Vpkedi~~ldmtvEda~k~iIS~G~v~p~~~~~~  206 (222)
T COG2928         136 AFVTGEKAGELKE-KEGRPMVAVFVPTTPNPTSGFLLLVPKEDIVPLDMTVEDALKYIISGGVVAPDSLPAK  206 (222)
T ss_pred             EEeccCCCcchhc-ccCCceEEEEcCCCCCCCcceEEEEEHHHceeccccHHHHhheeeeccccCCCccccc
Confidence            99999953  333 3357999999999996 79999999999999999999999999999999999855443

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.96  E-value=1.4e-28  Score=200.66  Aligned_cols=105  Identities=32%  Similarity=0.614  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeee
Q 022850          106 FITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVIT  185 (291)
Q Consensus       106 ~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~  185 (291)
                      +++++++||++|+++++++|+++++++|+++.|||++|+||+++||+++++++                           
T Consensus         1 ~l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~---------------------------   53 (108)
T PF04367_consen    1 FLILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSG---------------------------   53 (108)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhh---------------------------
Confidence            36778899999999999999999999999999999999999999999999986                           


Q ss_pred             cccccccceEEEEEcCCCCeeEEEEecccccc--cccCCCcceEEEEecCCCC-Cce
Q 022850          186 DQNTQAFKEVAIIRHPRIGEYAFGFITSSVVL--QNYSGEEELCCVYVPTNHL-YIG  239 (291)
Q Consensus       186 ~~~~~~fk~VVlV~~P~~g~~~iGFvT~~~~~--~~~~~~e~~v~VfVPtsp~-~sG  239 (291)
                       +++++|++||+||||++|.|++||+|++...  +... ++++++||+||||| ++|
T Consensus        54 -~~~~~f~~vVlV~~p~~g~~~igFvT~~~~~~~~~~~-~~~~v~VfvPtsPnPtsG  108 (108)
T PF04367_consen   54 -DKKKSFKKVVLVEFPRPGMYVIGFVTGEDPGELPGKT-GEEMVAVFVPTSPNPTSG  108 (108)
T ss_pred             -cccccCCeEEEEEecCCCcEEEEEEeccCcchhhccC-CCCEEEEEeCCCCCCCCC
Confidence             3344499999999999999999999999742  2222 45999999999997 676

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=89.29  E-value=5.9  Score=31.91  Aligned_cols=78  Identities=13%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850           57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI  136 (291)
Q Consensus        57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l  136 (291)
                      ..++.+...+.+.+|+.+.-.++.-++.++...-       .++-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus         9 l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~T-------QIQEqTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~if   81 (88)
T PRK15350          9 FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALT-------QIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIM   81 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456688899999999988888766665443321       123334556555566666677788899999999999999


Q ss_pred             ccccc
Q 022850          137 KRMPF  141 (291)
Q Consensus       137 ~rIPl  141 (291)
                      .+||-
T Consensus        82 ~~i~~   86 (88)
T PRK15350         82 LRIGE   86 (88)
T ss_pred             Hhhhh
Confidence            99983

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=88.60  E-value=6.4  Score=31.69  Aligned_cols=79  Identities=15%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850           57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI  136 (291)
Q Consensus        57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l  136 (291)
                      ..++.+...+.+..|+.+.-.++.-+++.+...-       .++-.-+.|+-=++.++++-++...|.++.+.++.++++
T Consensus         9 l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~f   81 (88)
T TIGR01402         9 LGREAIWLTLLLSAPVLLVALVVGLVISIFQAAT-------QIQEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREIF   81 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688899999999988877766665443321       123334566655566667777788999999999999999


Q ss_pred             ccccch
Q 022850          137 KRMPFV  142 (291)
Q Consensus       137 ~rIPlV  142 (291)
                      .+||-+
T Consensus        82 ~~i~~~   87 (88)
T TIGR01402        82 QRIPQG   87 (88)
T ss_pred             HHhhhh
Confidence            999863

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=88.36  E-value=6.9  Score=31.56  Aligned_cols=79  Identities=11%  Similarity=0.237  Sum_probs=56.8

Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 022850           56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWF  135 (291)
Q Consensus        56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~  135 (291)
                      ...++.+...+.+..|+.++-.++.-+++++...-       .++-.-++|+-=++.++++=++...|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (89)
T PRK05700          8 DLFREAMKVALMLAAPLLLVALVVGLVVSIFQAAT-------QINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456788899999999988887766665443321       12333456655555666666778899999999999999


Q ss_pred             hccccc
Q 022850          136 IKRMPF  141 (291)
Q Consensus       136 l~rIPl  141 (291)
                      +.+||-
T Consensus        81 f~~i~~   86 (89)
T PRK05700         81 FSNIPT   86 (89)
T ss_pred             HHHHHh
Confidence            999985

>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=87.40  E-value=12  Score=30.08  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850           57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI  136 (291)
Q Consensus        57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l  136 (291)
                      ..++.+...+.+.+|+.+.-.++.-++..+...-       .++-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus         9 l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~if   81 (88)
T PRK06010          9 IVRDAIWTVLVASGPAVLAAMVVGVAIALFQALT-------QIQEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLIY   81 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688899999999988887766665443321       123334555554555666666777889999999999999


Q ss_pred             ccccc
Q 022850          137 KRMPF  141 (291)
Q Consensus       137 ~rIPl  141 (291)
                      .+||-
T Consensus        82 ~~i~~   86 (88)
T PRK06010         82 SRIAG   86 (88)
T ss_pred             Hhhcc
Confidence            99983

>TIGR02120 GspF general secretion pathway protein F

Probab=86.78  E-value=9.2  Score=37.21  Aligned_cols=23  Identities=9%  Similarity=0.095  Sum_probs=18.6

Q ss_pred             HHHHHHHHhhccccchhHHHHHH
Q 022850          127 SVLSLGEWFIKRMPFVRHIYNAS  149 (291)
Q Consensus       127 ~l~~~~E~~l~rIPlVk~IYsai  149 (291)
                      ..-.+.|+++.|+|+++.+|...
T Consensus       242 ~~r~~~~~~l~kiP~~g~~~~~~  264 (399)
T TIGR02120       242 AFRLRFDRRLLRLPVIGRLVRGL  264 (399)
T ss_pred             HHHHHHHHHHhcccchHHHHHHH
Confidence            44567899999999999888753

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family

Probab=86.75  E-value=12  Score=29.71  Aligned_cols=77  Identities=14%  Similarity=0.344  Sum_probs=53.7

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850           57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI  136 (291)
Q Consensus        57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l  136 (291)
                      ..++.+...+.+.+|+.+.-.++.-+++++...-       .++-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus         5 ~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if   77 (81)
T TIGR01403         5 LTNQALLLVLILSLPPVLVAAIVGLLVSLLQALT-------QLQDQTLPFAIKLIAVFITLMLTAGWLGAEILNFANQIF   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788899999999988888766665443321       123334555554455555556777888899999999999


Q ss_pred             cccc
Q 022850          137 KRMP  140 (291)
Q Consensus       137 ~rIP  140 (291)
                      .+||
T Consensus        78 ~~i~   81 (81)
T TIGR01403        78 TMIP   81 (81)
T ss_pred             hhCC
Confidence            9887

This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.

>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=86.30  E-value=16  Score=29.52  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=55.9

Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 022850           56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWF  135 (291)
Q Consensus        56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~  135 (291)
                      ...++.+...+.+-+|+.+.-.++.-++..+...    .   .++-.-+.|+-=++.++++=++...|.++.+.++.+++
T Consensus         8 ~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~----T---QIQEqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~i   80 (88)
T PRK12781          8 ELVRAAIWTIIVASGPAVGAAMLVGIAIALLQAL----T---QIQEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEMV   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678889999999998887766666544332    1   12333455555555666666778889999999999999


Q ss_pred             hccccc
Q 022850          136 IKRMPF  141 (291)
Q Consensus       136 l~rIPl  141 (291)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK12781         81 YGRIES   86 (88)
T ss_pred             HHhhcc
Confidence            999883

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=86.18  E-value=1.4  Score=34.18  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=35.0

Q ss_pred             CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850          223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV  263 (291)
Q Consensus       223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v  263 (291)
                      +.+.+.+|+|-.|..-|.++++|++.+..+ |++.||...+.
T Consensus        19 e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~   60 (103)
T cd01277          19 EDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELI   60 (103)
T ss_pred             eCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHH
Confidence            467889999999999999999999999874 99998866554

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=82.62  E-value=17  Score=29.54  Aligned_cols=75  Identities=15%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             HHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 022850           60 KKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRM  139 (291)
Q Consensus        60 ~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rI  139 (291)
                      ..+-.+|.+..|+.+.-.++.-++.+....     .  .++---+.|+==++.++++-.++..|.++.+.++...+++||
T Consensus        12 ~ai~~~L~l~~P~ll~alvvGLvIsifQA~-----T--QIqEqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~if~~i   84 (89)
T COG1987          12 EAIWLVLMLSAPVLLVALVVGLVISIFQAA-----T--QIQEQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVTIFSNI   84 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            446678899999988777665555433222     1  123234555555667777888888999999999999999999


Q ss_pred             cc
Q 022850          140 PF  141 (291)
Q Consensus       140 Pl  141 (291)
                      |.
T Consensus        85 ~~   86 (89)
T COG1987          85 PQ   86 (89)
T ss_pred             Hh
Confidence            96

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=82.34  E-value=2.4  Score=34.67  Aligned_cols=44  Identities=14%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHHhhc
Q 022850          223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVVSG  266 (291)
Q Consensus       223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~viSg  266 (291)
                      +++.+.+|+|..|.+.|.++++|++.+..+ |++-||..++.-..
T Consensus        19 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~   63 (126)
T cd01275          19 RTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLV   63 (126)
T ss_pred             eCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHH
Confidence            467889999999988999999999999874 89988877554433

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=82.02  E-value=8.5  Score=38.51  Aligned_cols=23  Identities=9%  Similarity=0.166  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhhccccchhHHHHH
Q 022850          126 ASVLSLGEWFIKRMPFVRHIYNA  148 (291)
Q Consensus       126 ~~l~~~~E~~l~rIPlVk~IYsa  148 (291)
                      .+.-.+.|+++-|+|+++.+...
T Consensus       238 ~~~r~~~~~~llrlP~~g~l~~~  260 (397)
T COG1459         238 PAGRRRLDRLLLRLPLFGKLVRK  260 (397)
T ss_pred             hHHHHHHHhHHhcCCcHHHHHHH
Confidence            35667889999999999988764

>PRK15333 type III secretion system protein SpaQ; Provisional

Probab=81.53  E-value=25  Score=28.30  Aligned_cols=78  Identities=15%  Similarity=0.082  Sum_probs=54.4

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850           57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI  136 (291)
Q Consensus        57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l  136 (291)
                      ..++.+...+.+..|+.+.-.++.-+++.+...-       .++-.-+.|+-=++.++++=++...|.++.+.++.++++
T Consensus         7 ~~~~al~~~l~ls~P~L~valvVGlvIsi~QA~T-------QIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if   79 (86)
T PRK15333          7 AGNKALYLVLILSGWPTIVATIIGLLVGLFQTVT-------QLQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVI   79 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456688889999999888777666665443321       123334555555555666666778899999999999999


Q ss_pred             ccccc
Q 022850          137 KRMPF  141 (291)
Q Consensus       137 ~rIPl  141 (291)
                      ..+|-
T Consensus        80 ~~~~~   84 (86)
T PRK15333         80 FLALA   84 (86)
T ss_pred             Hhhhc
Confidence            88874

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=81.37  E-value=2.4  Score=31.60  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CcceEEEEecCCCCCceeEEEEeCCCeec-CCCCHHHHHHHHh
Q 022850          223 EEELCCVYVPTNHLYIGDIFLINTKDVIR-PNLSVREGIEIVV  264 (291)
Q Consensus       223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~-lDmSveeAmk~vi  264 (291)
                      +++.+.+|+|-.|...|-++++|++.+.. .|++.|+..++..
T Consensus         3 e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~   45 (86)
T cd00468           3 DDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVI   45 (86)
T ss_pred             ecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHH
Confidence            46788999999998899999999998876 4898876554443

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00