Citrus Sinensis ID: 022907

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDGSDFI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEccEEEEEEEEcccccEEEEEEEcccccccccccHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccEEEEEEEcccccccEEEEEEEEEccEEEEEEcccccccEEEEEEEccHccccccccHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASghvltatgpsadtdftspstdevgidhwnelddnyafvyvkpekgskKVLVKCLVMNNKLLVDALadgasepvhleINVADFvakngsnysdqFQNLEKLVTDVDKEIILQLygsskpassergegsrlnnpdfgyfvhqgpqplptgtpvppinpdlggdvypgpgagmyprrgrfggdggmligpnhpgffggepdlprgnpwpippgarfdpygppdvpglepngfirnssrrpdgthpdlplrpdgsdfi
Flexible Loop (DISEMBL)
MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQLygsskpassergeGSRLNNPDFGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFirnssrrpdgthpdlplrpdgsdfi
Low Complexity Region (SEG)
MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHqgpqplptgtpvppINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDGSDFI
Disordered region (IsUnstruct)
*******MAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG*************EVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQLY*********************GYFV**************************************F***GGMLIG*****F**************************************************************
Disordered Region (DISOPRED)
***DKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTAT********************WNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEI******************************************************YPG********************************************GARFDPYGPPDV*********************************
Disordered Region (DISEMBL)
MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQLYGS***********SRLNNPDFGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDGSDFI
Disordered Region (DISPRO)
****KSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSA*********DEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIIL*******************************PQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSS**PDGTHPDLPLRPD***F*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDGSDFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q9M330	302	Probable proteasome inhib	yes	no	0.989	0.950	0.547	5e-70
Q8BHL8	271	Proteasome inhibitor PI31	yes	no	0.762	0.815	0.261	2e-10
Q5XIU5	271	Proteasome inhibitor PI31	yes	no	0.772	0.826	0.260	1e-09
Q92530	271	Proteasome inhibitor PI31	yes	no	0.786	0.841	0.260	3e-08
Q5RDN3	271	Proteasome inhibitor PI31	yes	no	0.789	0.845	0.25	9e-08
Q3SX30	270	Proteasome inhibitor PI31	yes	no	0.775	0.833	0.243	2e-07
Q9UTI1	265	Uncharacterized protein C	yes	no	0.686	0.750	0.282	0.0003

>sp|Q9M330|PSMF1_ARATH Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1

 Score =  264 bits (675), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 167/305 (54%), Positives = 206/305 (67%), Gaps = 18/305 (5%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG--PSADTDFTSPSTDE 58
           M+N ++VMA+IR ARP FRN+ DK+AFA+H++F+ASG++LTATG    AD   +S S ++
Sbjct: 1   MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQND 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           VGI+ WNE +  YAFVY  P+KGSKK+LVKCL M++KLLVDA+ADG +EP HLEI V D+
Sbjct: 61  VGIEGWNEFEGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDY 120

Query: 119 VAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQ- 176
             + N  +YS QF+NL+KLVTD+  EII +L G  KP +S R + S   N +  Y+    
Sbjct: 121 AEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTP 179

Query: 177 ---GPQPLPTGTPVPPINPDLGG--DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGF--F 229
              GPQ  P+G  VPPI P  GG  D++PGPGAGMYP RG F GDG ML+GP  P F  F
Sbjct: 180 NPLGPQIHPSGVVVPPI-PGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPTDPRFFPF 237

Query: 230 GGEPDLP----RGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPD 285
           G   D P      +P   PPGARFDPYGPP VPG EP  F R   R P G HPDL   P 
Sbjct: 238 GDGSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPG 297

Query: 286 GSDFI 290
           GSDFI
Sbjct: 298 GSDFI 302

Could play an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8BHL8|PSMF1_MOUSE Proteasome inhibitor PI31 subunit OS=Mus musculus GN=Psmf1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 122/268 (45%), Gaps = 47/268 (17%)

Query: 9   AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
            +  +A P+     D L   +H   + +G+    TG   D    S    E+    WN   
Sbjct: 6   VLFASAAPSMSCPQDALVCFLHWEVVTNGYYALGTG---DQPGPSDKKSELLPAKWNSNK 62

Query: 69  DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
           + YA  Y + + G++K+L+K + + N ++++ L  G  +   L +N+ D++ A++ S++ 
Sbjct: 63  ELYALRY-ESKDGARKLLLKAVSVENGMIINVLELGTQQVADLTLNLDDYIDAEDLSDFH 121

Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPLPTGT 185
             ++N E+L + +   II  ++        E+ E +R N+P  +F     +   PL   +
Sbjct: 122 RTYKNSEELRSQIRSGIITPIH--------EQWEKARANSPPREFPPATAREVDPLQISS 173

Query: 186 PVP----------PINP-DLGGDVYPGPGAGMYPRRGRFGGD-GGMLIGPNHPGF----- 228
             P          P++P  +GGD        + P    FG   GGM++ P   GF     
Sbjct: 174 HRPHTSRQPAWRDPLSPFAVGGD-------DLDP----FGCQRGGMIVDPLRSGFPRVLI 222

Query: 229 --FGGEPDLPRGNPWPIPPGARFDPYGP 254
               G P+  R  P  +PPGARFDP+GP
Sbjct: 223 DPSSGLPN--RLPPGAVPPGARFDPFGP 248

Plays an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome. Also inhibits the activation of the proteasome by the proteasome regulatory proteins PA700 and PA28.

Mus musculus (taxid: 10090)

>sp|Q5XIU5|PSMF1_RAT Proteasome inhibitor PI31 subunit OS=Rattus norvegicus GN=Psmf1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 41/265 (15%)

Query: 9   AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
            +  +A P      D L   +H   + +G+    TG   D +       E+    WN   
Sbjct: 6   VLFASAAPAMTCPQDALVCFLHWEVVTNGYYGLGTGDQPDPN---DKKSELLPAEWNSNK 62

Query: 69  DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
           + YA  Y + + G++K+L+K + + N ++++ L  G  +   L +N+ D++ A++ S++ 
Sbjct: 63  ELYALRY-ESKDGARKLLLKAVSVENGMIINVLEHGTQQVADLTLNLDDYIDAEDLSDFH 121

Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPLPTGT 185
             ++N E+L + +   II  ++        E+ E  RL++P  +F     +   PL   +
Sbjct: 122 RTYKNSEELRSRIRSGIITPIH--------EQWEKVRLSSPPREFPPATAREVDPLRISS 173

Query: 186 PVP----------PINPDLGGDVYPGPGAGMYPRRGRFGGD-GGMLIGPNHPGFFGGEPD 234
             P          P++P   G      G  + P    FG   GGM++ P   GF     D
Sbjct: 174 HHPHTSRQPTWRDPLSPFAVG------GEDLDP----FGCQRGGMIVDPLRSGFPRALID 223

Query: 235 ----LP-RGNPWPIPPGARFDPYGP 254
               LP R  P  +PPGARFDP+GP
Sbjct: 224 PSSGLPNRLPPGAVPPGARFDPFGP 248

Plays an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome. Also inhibits the activation of the proteasome by the proteasome regulatory proteins PA700 and PA28.

Rattus norvegicus (taxid: 10116)

>sp|Q92530|PSMF1_HUMAN Proteasome inhibitor PI31 subunit OS=Homo sapiens GN=PSMF1 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 116/261 (44%), Gaps = 33/261 (12%)

Query: 9   AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
            +  +A P      D L   +H   +  G+     G   D    +    E+    WN   
Sbjct: 6   VLFASAAPAITCRQDALVCFLHWEVVTHGYFGLGVG---DQPGPNDKKSELLPAGWNNNK 62

Query: 69  DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
           D Y   Y + + GS+K+LVK + + + ++++ L  G+ +   L +N+ D++ A++  ++ 
Sbjct: 63  DLYVLRY-EYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFH 121

Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPL---- 181
             ++N E+L + +   II  ++        E+ E + +++P  +F     +   PL    
Sbjct: 122 RTYKNSEELRSRIVSGIITPIH--------EQWEKANVSSPHREFPPATAREVDPLRIPP 173

Query: 182 --PTGTPVPPINPDLGGDVYPGPGAGMY-PRRGRFGGDGGMLIGPNHPGFFGGEPD---- 234
             P  +  PP    LG  V  G     + PRRG      GM++ P   GF     D    
Sbjct: 174 HHPHTSRQPPWCDPLGPFVVGGEDLDPFGPRRG------GMIVDPLRSGFPRALIDPSSG 227

Query: 235 LP-RGNPWPIPPGARFDPYGP 254
           LP R  P  +PPGARFDP+GP
Sbjct: 228 LPNRLPPGAVPPGARFDPFGP 248

Plays an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome. Also inhibits the activation of the proteasome by the proteasome regulatory proteins PA700 and PA28.

Homo sapiens (taxid: 9606)

>sp|Q5RDN3|PSMF1_PONAB Proteasome inhibitor PI31 subunit OS=Pongo abelii GN=PSMF1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 31/260 (11%)

Query: 9   AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
            +  +A P      D L   +H   +  G+     G   D    +    E+    WN   
Sbjct: 6   VLFASAAPAITCTQDALVCFLHWEVVTHGYYALGVG---DQPGPNDKKSELLPAGWNNNK 62

Query: 69  DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
           D Y   Y + + GS+K+LVK + + + ++++ L  G+ +   L +N+ D++ A++  ++ 
Sbjct: 63  DLYVLRY-EYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFH 121

Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP--DFGYFVHQGPQPL---- 181
             ++N E+L + +   II  ++        E+ E + +++P  +F     +   PL    
Sbjct: 122 RTYKNSEELRSRIVSGIITPIH--------EQWEKANVSSPHREFPPATAREVDPLRIPP 173

Query: 182 --PTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPD----L 235
             P  +  PP    LG     G     +  R      GGM++ P   GF     D    L
Sbjct: 174 HHPHTSRQPPWCDPLGPFAVGGEDLDPFGHR-----RGGMIVDPLRSGFPRALIDPSSGL 228

Query: 236 P-RGNPWPIPPGARFDPYGP 254
           P R  P  +PPGARFDP+GP
Sbjct: 229 PNRLPPGAVPPGARFDPFGP 248

Plays an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome. Also inhibits the activation of the proteasome by the proteasome regulatory proteins PA700 and PA28.

Pongo abelii (taxid: 9601)

>sp|Q3SX30|PSMF1_BOVIN Proteasome inhibitor PI31 subunit OS=Bos taurus GN=PSMF1 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 38/263 (14%)

Query: 9   AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELD 68
            +  +A P      D L   +H   +  G+     G   D    +    E+    WN   
Sbjct: 6   VLFASAAPAITCAQDALVCFLHWEVVTHGYYGLGAG---DQPGPNDKKSELLPVEWNSNK 62

Query: 69  DNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYS 127
           D Y   Y + + GS+K+LVK + + N ++++ L  G+ +   L +N+ D++ +++  ++ 
Sbjct: 63  DLYVLRY-ESKDGSRKLLVKAVTVENSMIINVLEHGSQQVSDLTLNLNDYIDSEHLVDFH 121

Query: 128 DQFQNLEKLVTDVDKEIILQLYGSSK-----------PASSERGEGSRLNNPDFGYFVHQ 176
             ++N E+L + +   II  ++   +           PA++   +  R++         Q
Sbjct: 122 RVYKNSEELRSRIVSGIITPIHEQWEKANLSPHREFPPATAREVDPLRIHP--------Q 173

Query: 177 GPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPD-- 234
            P      T   P+ P   G      G  + P   R    GGM++ P   GF     D  
Sbjct: 174 HPHTSRQPTWCDPLGPFAVG------GEDLDPFGCR---RGGMIVDPLRSGFPRALIDPS 224

Query: 235 --LP-RGNPWPIPPGARFDPYGP 254
             LP R  P  +PPGARFDP+GP
Sbjct: 225 SGLPNRLPPGAVPPGARFDPFGP 247

Plays an important role in control of proteasome function. Inhibits the hydrolysis of protein and peptide substrates by the 20S proteasome. Also inhibits the activation of the proteasome by the proteasome regulatory proteins PA700 and PA28.

Bos taurus (taxid: 9913)

>sp|Q9UTI1|YKZA_SCHPO Uncharacterized protein C15E1.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.10 PE=4 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 91/237 (38%), Gaps = 38/237 (16%)

Query: 67  LDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAKNGSNY 126
           L ++  F Y+  E  S+ V  + L+  NK +    A+ +S      I   D         
Sbjct: 45  LTEDSEFNYIVNE--SQNVSTR-LIFWNKWIYILCANTSSNITATRIFRLD--------- 92

Query: 127 SDQFQNLEKLVTDV-----DKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQGPQPL 181
            DQ  NLE LV +V     D  +      ++K  S+               F   GP   
Sbjct: 93  DDQPWNLESLVAEVCPVDTDNRLAEHAARTAKDTSANELNYESYQEKSRAPFGFAGPFGA 152

Query: 182 PTGTPVPPINPDLGG-DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFF---GGEPDLPR 237
             G+   P+ P +G  D+YP    G        G DGGM+   NHP F        +   
Sbjct: 153 MPGSQ--PMFPSIGASDLYPAGIGG-----SDMGNDGGMIPTFNHPIFHPENRSRNEQAS 205

Query: 238 GNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPD----GTHPDLPLRPDGSDFI 290
            N   IPPGAR+DP GP D       GF R+  R+P     G     P  PD  DF+
Sbjct: 206 ANRTNIPPGARYDPTGPGDF-----RGFGRD-ERKPQFPFKGPRSQFPGEPDNDDFM 256

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
225440520	296	PREDICTED: probable proteasome inhibitor	0.993	0.972	0.622	2e-84
449516868	318	PREDICTED: probable proteasome inhibitor	1.0	0.911	0.581	5e-84
359481725	302	PREDICTED: probable proteasome inhibitor	0.993	0.953	0.600	5e-83
449460365	318	PREDICTED: probable proteasome inhibitor	1.0	0.911	0.578	5e-83
255587955	309	proteasome inhibitor, putative [Ricinus	0.996	0.935	0.551	4e-77
357505735	309	hypothetical protein MTR_7g065120 [Medic	1.0	0.938	0.524	2e-69
15232382	302	proteasome inhibitor subunit 1 (PI31) [A	0.989	0.950	0.547	3e-68
356556224	300	PREDICTED: probable proteasome inhibitor	0.982	0.95	0.547	6e-67
297816702	302	hypothetical protein ARALYDRAFT_485789 [	0.989	0.950	0.537	2e-66
224138906	305	predicted protein [Populus trichocarpa]	0.989	0.940	0.503	4e-65

>gi|225440520|ref|XP_002275006.1| PREDICTED: probable proteasome inhibitor isoform 1 [Vitis vinifera] gi|297740291|emb|CBI30473.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/297 (62%), Positives = 214/297 (72%), Gaps = 9/297 (3%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSA--DTDFTSPSTDE 58
           M+ +KSVMAVIRA+RP+FRN  DK+AFAVHA F++SG++LTATG  A  +T  +S STDE
Sbjct: 1   MATEKSVMAVIRASRPSFRNAHDKVAFAVHAAFISSGYLLTATGNPAFSETALSSTSTDE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           VGI+ WNEL D+YAFVY  PEKGSKKVLVKCLVMN+KLLV ALADGASEP+HLEINV D+
Sbjct: 61  VGIERWNELQDDYAFVYFNPEKGSKKVLVKCLVMNDKLLVAALADGASEPIHLEINVEDY 120

Query: 119 VAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYGSS-KPASSERGEGSR--LNNPDFGYFV 174
           VA+N G+NYS QF+NL+KLV  +DKEI+ +L GSS KP SSE   G R  LN P  G   
Sbjct: 121 VAENGGTNYSGQFKNLDKLVKTLDKEILSKLNGSSDKPTSSETRPGQRQNLNEPGMGVAE 180

Query: 175 HQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFGGEPD 234
            Q  Q  P G   PP+NP  G D++PGPGAGMYP R  F G G ML+GPN P +FGG   
Sbjct: 181 PQHTQTYPAGLVYPPVNPIGGSDLFPGPGAGMYPTRSDF-GSGSMLLGPNDPRWFGGVGG 239

Query: 235 LPR--GNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDGSDF 289
            P   G    +PPGARFDPYGPP VPG EPN F R   R   GTHPDL     GSDF
Sbjct: 240 DPSFPGGQPGVPPGARFDPYGPPGVPGFEPNRFTRMPRRPGGGTHPDLQHFGTGSDF 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516868|ref|XP_004165468.1| PREDICTED: probable proteasome inhibitor-like [Cucumis sativus]

 Score =  317 bits (811), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 221/318 (69%), Gaps = 28/318 (8%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTD--FTSPSTDE 58
           M N++SVMAVIRA R TFRND+DK+AFAVHATFLASG VLTATGPSA T+  F+SPSTDE
Sbjct: 1   MVNEQSVMAVIRATRATFRNDYDKVAFAVHATFLASGFVLTATGPSAFTEPAFSSPSTDE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGS--KKVLVKCLVMNNKLLVDALADGASEPVHLEINVA 116
           V I+ WN+L+D YA++Y   EK S  KKV+VKCLVMN KLLVDAL D  SEP+HLEI+V 
Sbjct: 61  VSIEGWNDLEDEYAYIYANLEKDSNWKKVIVKCLVMNGKLLVDALTDKNSEPLHLEIDVE 120

Query: 117 DFVAKNG-SNYSDQFQNLEKLVTDVDKEIILQLYGSSK-----PASSERGEGSR--LNNP 168
           + V  NG SNY+ Q++NL+KLV  +D EI+ +L GSSK     PA +E  E S   +N P
Sbjct: 121 EIVNPNGGSNYTTQYRNLDKLVKRLDLEILSKLDGSSKASTSNPARAESSERSSGVVNEP 180

Query: 169 DFG-------------YFVHQGPQPL--PTGTPVPPINPDLGGDVYPGPGAGMYPRRGRF 213
             G             Y + + P P+  P+G  +PPINP  GGD++PGPGAGMYP RG F
Sbjct: 181 SSGIPETRSPPSNMPLYGIPERPGPMIHPSGVVIPPINPLGGGDLFPGPGAGMYPARGGF 240

Query: 214 GGDGGMLIGPNHPGFFG-GEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRR 272
            GDG ML+GPN P +FG G     +G    +PPGARFDPYGPPDVPG EPN F+RN  R 
Sbjct: 241 SGDGSMLLGPNDPRWFGIGRGPGFQGGQPGVPPGARFDPYGPPDVPGFEPNRFVRNPRRP 300

Query: 273 PDGTHPDLPLRPDGSDFI 290
             GTHPDL     GSDFI
Sbjct: 301 GGGTHPDLEHFGGGSDFI 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481725|ref|XP_003632664.1| PREDICTED: probable proteasome inhibitor isoform 2 [Vitis vinifera]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/303 (60%), Positives = 214/303 (70%), Gaps = 15/303 (4%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSA--DTDFTSPSTDE 58
           M+ +KSVMAVIRA+RP+FRN  DK+AFAVHA F++SG++LTATG  A  +T  +S STDE
Sbjct: 1   MATEKSVMAVIRASRPSFRNAHDKVAFAVHAAFISSGYLLTATGNPAFSETALSSTSTDE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           VGI+ WNEL D+YAFVY  PEKGSKKVLVKCLVMN+KLLV ALADGASEP+HLEINV D+
Sbjct: 61  VGIERWNELQDDYAFVYFNPEKGSKKVLVKCLVMNDKLLVAALADGASEPIHLEINVEDY 120

Query: 119 VAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYGSS-KPASSER--------GEGSRLNNP 168
           VA+N G+NYS QF+NL+KLV  +DKEI+ +L GSS KP S+ +        G+   LN P
Sbjct: 121 VAENGGTNYSGQFKNLDKLVKTLDKEILSKLNGSSDKPTSTCKQSDSETRPGQRQNLNEP 180

Query: 169 DFGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGF 228
             G    Q  Q  P G   PP+NP  G D++PGPGAGMYP R  F G G ML+GPN P +
Sbjct: 181 GMGVAEPQHTQTYPAGLVYPPVNPIGGSDLFPGPGAGMYPTRSDF-GSGSMLLGPNDPRW 239

Query: 229 FGGEPDLPR--GNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDG 286
           FGG    P   G    +PPGARFDPYGPP VPG EPN F R   R   GTHPDL     G
Sbjct: 240 FGGVGGDPSFPGGQPGVPPGARFDPYGPPGVPGFEPNRFTRMPRRPGGGTHPDLQHFGTG 299

Query: 287 SDF 289
           SDF
Sbjct: 300 SDF 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460365|ref|XP_004147916.1| PREDICTED: probable proteasome inhibitor-like [Cucumis sativus]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 184/318 (57%), Positives = 220/318 (69%), Gaps = 28/318 (8%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTD--FTSPSTDE 58
           M N++SVMAVIRA R TFRND+DK+AFAVHATFLASG VLTATGPSA T+  F+SPSTDE
Sbjct: 1   MVNEQSVMAVIRATRATFRNDYDKVAFAVHATFLASGFVLTATGPSAFTEPTFSSPSTDE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGS--KKVLVKCLVMNNKLLVDALADGASEPVHLEINVA 116
           V I+ WN+L+D YA++Y   EK S  KKV+VKCLVMN KLLVDAL D  SEP+HLEI+V 
Sbjct: 61  VSIEGWNDLEDEYAYIYANLEKDSNWKKVIVKCLVMNGKLLVDALTDKNSEPLHLEIDVE 120

Query: 117 DFVAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYGSSK-----PASSERGEGSR--LNNP 168
           + V  N GSNY+ Q++NL+KLV  +D EI+ +L GSSK     PA +E  E S   +N P
Sbjct: 121 EIVNPNGGSNYTTQYRNLDKLVKRLDLEILSKLDGSSKASTSNPARAESSERSSGVVNEP 180

Query: 169 DFG-------------YFVHQGPQPL--PTGTPVPPINPDLGGDVYPGPGAGMYPRRGRF 213
             G             Y + + P P+  P+G  +PPINP  GGD++PGPGAGMYP R  F
Sbjct: 181 SSGIPETRSPPSNMPLYGIPERPGPMIHPSGVVIPPINPLGGGDLFPGPGAGMYPARFGF 240

Query: 214 GGDGGMLIGPNHPGFFG-GEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRR 272
            GDG ML+GPN P +FG G     +G    +PPGARFDPYGPPDVPG EPN F+RN  R 
Sbjct: 241 SGDGSMLLGPNDPRWFGIGRGPGFQGGQPGVPPGARFDPYGPPDVPGFEPNRFVRNPRRP 300

Query: 273 PDGTHPDLPLRPDGSDFI 290
             GTHPDL     GSDFI
Sbjct: 301 GGGTHPDLEHFGGGSDFI 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587955|ref|XP_002534452.1| proteasome inhibitor, putative [Ricinus communis] gi|223525264|gb|EEF27932.1| proteasome inhibitor, putative [Ricinus communis]

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 171/310 (55%), Positives = 216/310 (69%), Gaps = 21/310 (6%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSA--DTDFTSPSTDE 58
           M+N+KSV+AVIRAARP F+N+ DK+ FAVHA+FLA+G+VL ATGPSA  D+ F + ST+E
Sbjct: 1   MTNEKSVIAVIRAARPCFKNNPDKVVFAVHASFLAAGYVLIATGPSAFSDSAFYTSSTEE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           VGI+ WN+ ++ YAFVY  P+KG KKVL+KCLV+N+ LL+DALADG  +P HLEI + +F
Sbjct: 61  VGIETWNDSENEYAFVYANPDKGGKKVLLKCLVINDNLLLDALADGVPDPAHLEIRIGEF 120

Query: 119 VAKN-GSNYSDQFQNLEKLVTDVDK---------EIILQLYGSSKPASSERGEGSR--LN 166
           V +N G+N SDQF+NL++LV  +D             L+   SS  + S   +GS+  +N
Sbjct: 121 VRENGGTNISDQFKNLDELVRSIDADLLSKLDDSSSSLRPTSSSNQSGSGTSDGSKCGIN 180

Query: 167 NPDFGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHP 226
            P  G     G Q LP+G  +PPINP+ G D++PGPGAGMYP RG F GDG MLIGPN P
Sbjct: 181 EPGVGP-ESIGSQILPSGIVIPPINPNRGSDIFPGPGAGMYPTRGGFVGDGSMLIGPNDP 239

Query: 227 GFFGGEPDLPRGNP------WPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDL 280
            +FGG+P+ P GNP        +PPG+RFDPYGPP VPG EPN F RN  R   GTHPDL
Sbjct: 240 RWFGGDPNFPGGNPNFPGGLPGVPPGSRFDPYGPPGVPGFEPNRFARNRPRPGRGTHPDL 299

Query: 281 PLRPDGSDFI 290
                GSDFI
Sbjct: 300 EHFGGGSDFI 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505735|ref|XP_003623156.1| hypothetical protein MTR_7g065120 [Medicago truncatula] gi|355498171|gb|AES79374.1| hypothetical protein MTR_7g065120 [Medicago truncatula]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/309 (52%), Positives = 199/309 (64%), Gaps = 19/309 (6%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSA--DTDFTSPSTDE 58
           M+ DKSV+AVIRAARPTFRN  DK+AF VH++FLASG++LTATGP A  DT  ++PS DE
Sbjct: 1   MATDKSVLAVIRAARPTFRNQNDKIAFVVHSSFLASGYILTATGPQALSDTALSNPSNDE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEK-GSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVAD 117
           V +DHWNEL+D YAFVY   EK G KKVLVKCLVMN KLLV AL++G  EP+HLEINVAD
Sbjct: 61  VSVDHWNELNDEYAFVYANSEKEGLKKVLVKCLVMNGKLLVHALSEGFKEPLHLEINVAD 120

Query: 118 FVAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGS------RLNNPDF 170
           +  ++ GSN+S QF+NL+KLV  +D +I+ +L G++  +SS +   +        + P  
Sbjct: 121 YAGEDGGSNFSQQFKNLDKLVKKIDADILSKLDGTAHASSSTKSSKTSDSTRPETSEPVP 180

Query: 171 GYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFFG 230
           G+    GP     G  VPP+    G D++PGPGAGMYP RG     G ML+GPN P +F 
Sbjct: 181 GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFS 240

Query: 231 -------GEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLP-- 281
                  G      G     PPGARFDP GPP VPG EPN F RN  R     HPDL   
Sbjct: 241 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQHF 300

Query: 282 LRPDGSDFI 290
            R   SD+I
Sbjct: 301 RRDTDSDYI 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232382|ref|NP_190965.1| proteasome inhibitor subunit 1 (PI31) [Arabidopsis thaliana] gi|18203248|sp|Q9M330.1|PSMF1_ARATH RecName: Full=Probable proteasome inhibitor gi|7630017|emb|CAB88359.1| putative protein [Arabidopsis thaliana] gi|17381084|gb|AAL36354.1| unknown protein [Arabidopsis thaliana] gi|21436237|gb|AAM51257.1| unknown protein [Arabidopsis thaliana] gi|332645645|gb|AEE79166.1| proteasome inhibitor subunit 1 (PI31) [Arabidopsis thaliana]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 167/305 (54%), Positives = 206/305 (67%), Gaps = 18/305 (5%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG--PSADTDFTSPSTDE 58
           M+N ++VMA+IR ARP FRN+ DK+AFA+H++F+ASG++LTATG    AD   +S S ++
Sbjct: 1   MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQND 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           VGI+ WNE +  YAFVY  P+KGSKK+LVKCL M++KLLVDA+ADG +EP HLEI V D+
Sbjct: 61  VGIEGWNEFEGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDY 120

Query: 119 VAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQ- 176
             + N  +YS QF+NL+KLVTD+  EII +L G  KP +S R + S   N +  Y+    
Sbjct: 121 AEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTP 179

Query: 177 ---GPQPLPTGTPVPPINPDLGG--DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGF--F 229
              GPQ  P+G  VPPI P  GG  D++PGPGAGMYP RG F GDG ML+GP  P F  F
Sbjct: 180 NPLGPQIHPSGVVVPPI-PGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPTDPRFFPF 237

Query: 230 GGEPDLP----RGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPD 285
           G   D P      +P   PPGARFDPYGPP VPG EP  F R   R P G HPDL   P 
Sbjct: 238 GDGSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPG 297

Query: 286 GSDFI 290
           GSDFI
Sbjct: 298 GSDFI 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556224|ref|XP_003546426.1| PREDICTED: probable proteasome inhibitor-like isoform 1 [Glycine max]

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 167/305 (54%), Positives = 203/305 (66%), Gaps = 20/305 (6%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTD--FTSPSTDE 58
           M++ K V+A+IRAARPTFRN  DK+AFAVH++FLASG+VLTATGP A +D  F+ PS DE
Sbjct: 1   MASQKLVLALIRAARPTFRNQNDKIAFAVHSSFLASGYVLTATGPQALSDDAFSDPSNDE 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           V +DHWNEL+D YAFVY  PEKGS+KVLVKCLVMN+KLLV AL  G+SEP+ LEI+V D+
Sbjct: 61  VSVDHWNELNDEYAFVYANPEKGSEKVLVKCLVMNDKLLVHALTQGSSEPLSLEIDVGDY 120

Query: 119 VAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYG----SSKPASSERGEGSRLNNPD---- 169
             ++ GSNYS QF+NL+KLV  +D +I+ +L G    SS   SSE  + +R   PD    
Sbjct: 121 AEEDGGSNYSQQFKNLDKLVKRIDGDILSKLDGSAKASSSSRSSETSDRTRQEIPDPVAG 180

Query: 170 FGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFF 229
           FG      P   PT    P +    G D+ PGP AG++P RG  G  G ML+GPN P +F
Sbjct: 181 FGE-----PADPPTQIIFPSVPIGSGSDLVPGPAAGVFPSRGGHGIGGSMLVGPNDPRWF 235

Query: 230 GGEPDLP--RGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLP-LRPDG 286
           GG    P   G    +PPGARFDPYGPP VPG EPN F RN  R     HPDL   R D 
Sbjct: 236 GGIGGDPAFPGGLPGVPPGARFDPYGPPGVPGFEPNKFARNPRRPGYDAHPDLQHFRRDA 295

Query: 287 -SDFI 290
            SD+I
Sbjct: 296 DSDYI 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816702|ref|XP_002876234.1| hypothetical protein ARALYDRAFT_485789 [Arabidopsis lyrata subsp. lyrata] gi|297322072|gb|EFH52493.1| hypothetical protein ARALYDRAFT_485789 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 164/305 (53%), Positives = 205/305 (67%), Gaps = 18/305 (5%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG--PSADTDFTSPSTDE 58
           M+N ++VMA+IR ARP FRN+ DK+AFA+H++F+ASG++LTATG    AD   +S S ++
Sbjct: 1   MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFIASGYILTATGRPAFADDALSSSSQND 60

Query: 59  VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
           VGI+ WNE D  YAFVY  P+KGSKK+LVKCL M++KLLVDA+ADG +EP HLEI V  +
Sbjct: 61  VGIEGWNEFDGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVDKY 120

Query: 119 VAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHQ- 176
             ++   +YS QF+NL+KLVTD+  +I+ +L G  KP +S R + S   N +  Y+    
Sbjct: 121 AEESIEGDYSAQFKNLDKLVTDLQSQILDKLDGKPKPVAS-RAQSSSERNEEPRYYDDTP 179

Query: 177 ---GPQPLPTGTPVPPINPDLGG--DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGF--F 229
              GPQ  P+G  VPPI P  GG  D++PGPGAGMYP RG F GDG ML+GP+ P F  F
Sbjct: 180 NPLGPQIHPSGVVVPPI-PGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPSDPRFFPF 237

Query: 230 GGEPDLP----RGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPD 285
           G   D P       P   PPGARFDPYGPP VPG EP  F R   R P G HPDL   P 
Sbjct: 238 GDGSDRPGFMGPPQPSMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPG 297

Query: 286 GSDFI 290
           GSDFI
Sbjct: 298 GSDFI 302

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138906|ref|XP_002322931.1| predicted protein [Populus trichocarpa] gi|222867561|gb|EEF04692.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (648), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 155/308 (50%), Positives = 202/308 (65%), Gaps = 21/308 (6%)

Query: 1   MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTD---FTSPSTD 57
           M+N+KSVMAVIRAARP+F+N  DK+AFAVHA FLASG+ LTATG +A ++    ++PST+
Sbjct: 1   MANEKSVMAVIRAARPSFKNKHDKVAFAVHAAFLASGYALTATGLAAFSESAALSAPSTN 60

Query: 58  EVGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVAD 117
           EVG ++WNE+D  YAFVYV P+K  K+V++KCL +N KL V A++DG SEPV+LEI+V D
Sbjct: 61  EVGTENWNEVDGEYAFVYVNPDKEGKRVILKCLALNGKLAVSAISDGISEPVNLEIDVGD 120

Query: 118 FVAKN-GSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASS----------ERGEGSRLN 166
           +VA++ G+NYS+Q++NL+K+   +D+EI+ +L GSS  +            E  +GSR N
Sbjct: 121 YVAESEGTNYSEQYRNLDKIYKKLDEEILSKLDGSSTSSLKASSSGNRNGREARQGSRQN 180

Query: 167 NPD-FGYFVHQGPQPLPTGTPVPPINPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNH 225
           N    G+     PQ    G  VPP+  +   D+YPG GAGMYP     G  GGMLIGP+ 
Sbjct: 181 NETGVGFSEPASPQIPLPGYVVPPVPVNPMSDLYPGAGAGMYPTGA--GRGGGMLIGPDD 238

Query: 226 P---GFFGGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPL 282
           P   G FG +P      P  +PPGARFDP+GPP VPG EPN F R   R     HPDL  
Sbjct: 239 PSWSGLFGDDPGFLGRQPG-VPPGARFDPFGPPGVPGFEPNRFTRGPRRPGSNIHPDLSP 297

Query: 283 RPDGSDFI 290
                DFI
Sbjct: 298 MGRDPDFI 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2084510	302	AT3G53970 "AT3G53970" [Arabido	0.993	0.953	0.529	9.3e-75
TAIR|locus:2198060	175	AT1G48530 "AT1G48530" [Arabido	0.534	0.885	0.460	6.9e-31
DICTYBASE|DDB_G0282617	326	psmF1 "proteasome inhibitor PI	0.275	0.245	0.413	1.4e-11
MGI|MGI:1346072	271	Psmf1 "proteasome (prosome, ma	0.496	0.531	0.242	3e-11
RGD|1587528	271	Psmf1 "proteasome (prosome, ma	0.458	0.490	0.231	1e-10
UNIPROTKB|E2QT82	271	PSMF1 "Uncharacterized protein	0.448	0.479	0.229	2.3e-10
UNIPROTKB|Q3SX30	270	PSMF1 "Proteasome inhibitor PI	0.458	0.492	0.224	5e-09
UNIPROTKB|Q5QPM7	263	PSMF1 "Proteasome inhibitor PI	0.293	0.323	0.252	1.3e-08
UNIPROTKB|Q92530	271	PSMF1 "Proteasome inhibitor PI	0.293	0.313	0.252	1.5e-08
UNIPROTKB|Q5ZJL3	271	PSMF1 "Uncharacterized protein	0.789	0.845	0.256	1.8e-08

TAIR|locus:2084510 AT3G53970 "AT3G53970" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 161/304 (52%), Positives = 201/304 (66%)

Query:     1 MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG-PS-ADTDFTSPSTDE 58
             M+N ++VMA+IR ARP FRN+ DK+AFA+H++F+ASG++LTATG P+ AD   +S S ++
Sbjct:     1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQND 60

Query:    59 VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADF 118
             VGI+ WNE +  YAFVY  P+KGSKK+LVKCL M++KLLVDA+ADG +EP HLEI V D+
Sbjct:    61 VGIEGWNEFEGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDY 120

Query:   119 VAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNPDFGYFVHXX 177
               + N  +YS QF+NL+KLVTD+  EII +L G  KP +S R + S   N +  Y+    
Sbjct:   121 AEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTP 179

Query:   178 XXXXXXXXXXXXINPDL---GG--DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFF--G 230
                         + P +   GG  D++PGPGAGMYP RG FG DG ML+GP  P FF  G
Sbjct:   180 NPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMYPGRGGFG-DGSMLVGPTDPRFFPFG 238

Query:   231 GEPDLP--RGNPWP--IPPGARFDPYGPPDVPGLEPNGFIRNSSRRPDGTHPDLPLRPDG 286
                D P   G P P   PPGARFDPYGPP VPG EP  F R   R P G HPDL   P G
Sbjct:   239 DGSDRPGFMGPPHPGMPPPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPGG 298

Query:   287 SDFI 290
             SDFI
Sbjct:   299 SDFI 302

GO:0003674 "molecular_function" evidence=ND

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2198060 AT1G48530 "AT1G48530" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 76/165 (46%), Positives = 107/165 (64%)

Query:     1 MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATG-PSADTDFTSPSTDE- 58
             M+   +VM VIR+  P FRN  DK+AF VHA+   SG +LT+TG P+   D  S ST + 
Sbjct:    12 MATTHAVMGVIRSVMPAFRNKNDKIAFVVHASLAVSGFILTSTGRPAFAHDALSSSTTQC 71

Query:    59 -VGIDHWNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVAD 117
              VGI+ WNE D+ YAFVY  P K   + LVKCL MN+KLLVDA+A+   E  HL+I V +
Sbjct:    72 LVGIEGWNEFDEEYAFVYKCPVK---RYLVKCLAMNDKLLVDAIAEDGKEFGHLQIEVGN 128

Query:   118 FVAKNGS--NYSDQFQNLEKLVTDVDKEIILQL--YGSSKPASSE 158
             ++ ++G   +Y  QF+N +KLVT++  EI+ +L    ++  +SSE
Sbjct:   129 YIDESGEEGDYDTQFKNFDKLVTELKSEILCKLNTVSTTTKSSSE 173

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0282617 psmF1 "proteasome inhibitor PI31 subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 131 (51.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 36/87 (41%), Positives = 43/87 (49%)

Query:   195 GGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHP---GFFGGEPDLPRGNPWPIPPGARFDP 251
             G  V+PG G  +      FG       G N+P   G  G E  LPRG    +PPGARFDP
Sbjct:   236 GPGVFPGQGGQVGRDHPGFGNIHNPYGGGNNPYGTGLPGYEQRLPRG---AVPPGARFDP 292

Query:   252 YGPPDVPGLEPNGFIRNSSRRPDGTHP 278
             +GPP   G+ P+G  R    R D T P
Sbjct:   293 FGPP-TGGIPPSGRGRGMPDRDDFTPP 318

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=IEA

MGI|MGI:1346072 Psmf1 "proteasome (prosome, macropain) inhibitor subunit 1" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
 Identities = 38/157 (24%), Positives = 77/157 (49%)

Query:    13 AARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYA 72
             +A P+     D L   +H   + +G+    TG   D    S    E+    WN   + YA
Sbjct:    10 SAAPSMSCPQDALVCFLHWEVVTNGYYALGTG---DQPGPSDKKSELLPAKWNSNKELYA 66

Query:    73 FVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYSDQFQ 131
               Y + + G++K+L+K + + N ++++ L  G  +   L +N+ D++ A++ S++   ++
Sbjct:    67 LRY-ESKDGARKLLLKAVSVENGMIINVLELGTQQVADLTLNLDDYIDAEDLSDFHRTYK 125

Query:   132 NLEKLVTDVDKEIILQLYGSSKPASSERGEGSRLNNP 168
             N E+L + +   II  ++        E+ E +R N+P
Sbjct:   126 NSEELRSQIRSGIITPIH--------EQWEKARANSP 154

GO:0000502 "proteasome complex" evidence=IEA

RGD|1587528 Psmf1 "proteasome (prosome, macropain) inhibitor subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 32/138 (23%), Positives = 68/138 (49%)

Query:    13 AARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYA 72
             +A P      D L   +H   + +G+    TG   D +       E+    WN   + YA
Sbjct:    10 SAAPAMTCPQDALVCFLHWEVVTNGYYGLGTGDQPDPN---DKKSELLPAEWNSNKELYA 66

Query:    73 FVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYSDQFQ 131
               Y + + G++K+L+K + + N ++++ L  G  +   L +N+ D++ A++ S++   ++
Sbjct:    67 LRY-ESKDGARKLLLKAVSVENGMIINVLEHGTQQVADLTLNLDDYIDAEDLSDFHRTYK 125

Query:   132 NLEKLVTDVDKEIILQLY 149
             N E+L + +   II  ++
Sbjct:   126 NSEELRSRIRSGIITPIH 143

GO:0000502 "proteasome complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

UNIPROTKB|E2QT82 PSMF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 114 (45.2 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 31/135 (22%), Positives = 65/135 (48%)

Query:    16 PTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVY 75
             P   +  D L   +H   +  G+    TG   D    +    E+    WN   D Y   Y
Sbjct:    13 PAITSAQDALVCFLHWEVVTHGYYSVGTG---DQPGPNDKKSELLPAEWNSNKDLYVLRY 69

Query:    76 VKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYSDQFQNLE 134
              + + GS+K+LVK + + N ++++ L  G+ +   L +N+ D++ +++  ++   ++N E
Sbjct:    70 -ESKDGSRKLLVKAVTVENSMIINVLEFGSQQVSDLTLNLDDYIDSEHLGDFHRTYKNSE 128

Query:   135 KLVTDVDKEIILQLY 149
             +L + +   II  ++
Sbjct:   129 ELRSRIASGIITPIH 143

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3SX30 PSMF1 "Proteasome inhibitor PI31 subunit" [Bos taurus (taxid:9913)]

 Score = 103 (41.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
 Identities = 31/138 (22%), Positives = 65/138 (47%)

Query:    13 AARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYA 72
             +A P      D L   +H   +  G+     G   D    +    E+    WN   D Y 
Sbjct:    10 SAAPAITCAQDALVCFLHWEVVTHGYYGLGAG---DQPGPNDKKSELLPVEWNSNKDLYV 66

Query:    73 FVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYSDQFQ 131
               Y + + GS+K+LVK + + N ++++ L  G+ +   L +N+ D++ +++  ++   ++
Sbjct:    67 LRY-ESKDGSRKLLVKAVTVENSMIINVLEHGSQQVSDLTLNLNDYIDSEHLVDFHRVYK 125

Query:   132 NLEKLVTDVDKEIILQLY 149
             N E+L + +   II  ++
Sbjct:   126 NSEELRSRIVSGIITPIH 143

GO:0005737 "cytoplasm" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|Q5QPM7 PSMF1 "Proteasome inhibitor PI31 subunit" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 22/87 (25%), Positives = 50/87 (57%)

Query:    64 WNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKN 122
             WN   D Y   Y + + GS+K+LVK + + + ++++ L  G+ +   L +N+ D++ A++
Sbjct:    58 WNNNKDLYVLRY-EYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEH 116

Query:   123 GSNYSDQFQNLEKLVTDVDKEIILQLY 149
               ++   ++N E+L + +   II  ++
Sbjct:   117 LGDFHRTYKNSEELRSRIVSGIITPIH 143

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q92530 PSMF1 "Proteasome inhibitor PI31 subunit" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 22/87 (25%), Positives = 50/87 (57%)

Query:    64 WNELDDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKN 122
             WN   D Y   Y + + GS+K+LVK + + + ++++ L  G+ +   L +N+ D++ A++
Sbjct:    58 WNNNKDLYVLRY-EYKDGSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEH 116

Query:   123 GSNYSDQFQNLEKLVTDVDKEIILQLY 149
               ++   ++N E+L + +   II  ++
Sbjct:   117 LGDFHRTYKNSEELRSRIVSGIITPIH 143

GO:0004866 "endopeptidase inhibitor activity" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0005839 "proteasome core complex" evidence=NAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010951 "negative regulation of endopeptidase activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5ZJL3 PSMF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 67/261 (25%), Positives = 110/261 (42%)

Query:    23 DKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGS 82
             D L   +H   +  G+     G     +         G   W    + Y   Y K    +
Sbjct:    20 DALVCGIHWELIQHGYRCLGAGEQPGPEERKSELLPAG---WEANKEVYTLRY-KSTDDA 75

Query:    83 KKVLVKCLVMNNKLLVDALADGASEPV-HLEINVADFVAKNGSN-YSDQFQNLEKLVTDV 140
             +++L+K +V+ + ++++ + D AS+ V  + + VAD++     N +   ++N+E+L T +
Sbjct:    76 RELLLKAIVVEDSMILNVM-DRASQKVTDVTLAVADYINPEHLNDFHKVYKNMEELRTRI 134

Query:   141 DKEIILQLYGSSKPASSE-RGEGSRLNNP-DFGY--FVHXXXXXXXXXXXXXXINPDLGG 196
                II  L   ++ A  E + E    ++P D+                     +NP   G
Sbjct:   135 VSGIIAPLGVPTEKAKKESQAEKKDPDSPLDYNPRGIPPRHPAGARAPSWPSPLNPFAVG 194

Query:   197 DVYPGPGAGMYPRRGRFGGDGGMLIGPNHPGFF--GGEPD--LPRG-NPWPIPPGARFDP 251
                   G  + P  GR    GGM++ P   GF   G +P   LP G  P  +PPGARFDP
Sbjct:   195 ------GQDLDPLGGR---SGGMIVDPLRSGFPQPGIDPSTGLPSGLPPGAVPPGARFDP 245

Query:   252 YGP-------PDVPGLEPNGF 265
             +GP       PD   L P G+
Sbjct:   246 FGPLGAGRAGPDPDHLPPPGY 266

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M330	PSMF1_ARATH	No assigned EC number	0.5475	0.9896	0.9503	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
pfam11566	147	pfam11566, PI31_Prot_N, PI31 proteasome regulator	6e-31
pfam08577	68	pfam08577, PI31_Prot_C, PI31 proteasome regulator	9e-06

>gnl|CDD|221135 pfam11566, PI31_Prot_N, PI31 proteasome regulator N-terminal

 Score =  112 bits (283), Expect = 6e-31
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 8   MAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNEL 67
           M ++ +     +   D LA  VHA  L SG  L   G           ++E+    WN  
Sbjct: 1   MLLLLSISADLKLKSDALALFVHALLLESGFRLVGLGDEK----KLKESEELLPPGWNSN 56

Query: 68  DDNYAFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV--AKNGSN 125
            D+YAF Y  P+  S   L+K L   N LL++ALA G  +  +L INV D+V  ++  S+
Sbjct: 57  KDSYAFRYKHPQS-SMLYLLKILRSGNSLLINALALGTKKVHNLTINVEDYVSESELPSD 115

Query: 126 YSDQFQNLEKLVTDVDKEIILQLYGSSKPA 155
            ++ F+NL+KL +    EII  L       
Sbjct: 116 LAEVFKNLDKLSSLFKSEIISPLLPGLSKE 145

PI31 is a regulatory subunit of the immuno-proteasome which is an inhibitor of the 20 S proteasome in vitro.PI31 is also an F-box protein Fbxo7.Skp1 binding partner which requires an N terminal FP domain in both proteins for the interaction to occur via the FP beta sheets. The structure of PI31 FP domain contains a novel alpha/beta-fold and two intermolecular contact surfaces. This is the N-terminal domain of the members. Length = 147

>gnl|CDD|219914 pfam08577, PI31_Prot_C, PI31 proteasome regulator

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 196 GDVYPGPGAGMYPRRGRF------GGDGGMLIGPNHPGFFGGEPDLPRGNPWPIPPGARF 249
            D+YP PG G               G GGM+  PN PGF         G P  +PPGAR+
Sbjct: 5   RDLYP-PGLGPPDPFDPLPAPLGGNGQGGMIFDPNRPGFGPPRGGGGDGPPPGVPPGARY 63

Query: 250 DPYGP 254
           DP+GP
Sbjct: 64  DPFGP 68

PI31 is a cellular regulator of proteasome formation and of proteasome-mediated antigen processing. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG4761	266	consensus Proteasome formation inhibitor PI31 [Pos	100.0
PF11566	155	PI31_Prot_N: PI31 proteasome regulator N-terminal;	100.0
PF08577	73	PI31_Prot_C: PI31 proteasome regulator ; InterPro:	99.68
KOG4761	266	consensus Proteasome formation inhibitor PI31 [Pos	83.93

>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-50  Score=359.06  Aligned_cols=249  Identities=36%  Similarity=0.500  Sum_probs=198.0

Q ss_pred             CCChHHHHHHHHHHCCCCCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCC--CCCCCccCCccccCCCCceEEEeeCC
Q 022907            1 MSNDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFT--SPSTDEVGIDHWNELDDNYAFVYVKP   78 (290)
Q Consensus         1 m~~~~avL~~~~a~~p~i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~--~~~~se~LP~gWN~~~~~YsfrY~h~   78 (290)
                      ||+...++.+|+++.|.|++++|+||++|||+++++||+|+++|+.+..++.  +....|++|++||+.++.|+|||+++
T Consensus         1 ~~~~~~~~ll~~s~~p~irkksD~li~~vH~~ltk~g~~~~~~G~~~~~~da~S~~~~c~~~pdgWN~d~d~Yal~Y~~~   80 (266)
T KOG4761|consen    1 MADAHGWMLLIRSAQPAIRKKSDLLIAVVHFLLTKHGYRCTGVGDPAGPQDAGSELLQCEVGPDGWNEDDDEYALRYTDP   80 (266)
T ss_pred             CchhHHHHHHHHhcccccccccceeeehhhHHHhhheeEEeeccCCCCchhhcccccccccCccccccCCceeEEEEecC
Confidence            8999999999999999999999999999999999999999999997765432  22245778999999999999999997


Q ss_pred             CCCCceEEEEEEeeCCeeEEeeeecCCCCeEEEEEccchhhcc-CCCChhHHHHhHHHHHHHHHHHHHhhhcCCCC--CC
Q 022907           79 EKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSSK--PA  155 (290)
Q Consensus        79 ~~~s~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~-~~~d~~~~fk~l~~L~~~~k~~Ii~~L~~~~~--~~  155 (290)
                        .+++|||||+.|+++|+||+++.+++++++|||++++||++ +.++++.+|||+++|+++++++||+|+..-.+  .+
T Consensus        81 --gs~kyLvka~~~e~sLlinll~~~sk~~a~l~le~e~yvdes~~gd~~~~~kn~dklvtrlrsEiidpl~~~~tr~vs  158 (266)
T KOG4761|consen   81 --GSKKYLVKALAMEDSLLINLLASGSKEVAHLCLEPEDYVDESCEGDYDTQFKNLDKLVTRLRSEIIDPLVTVGTRRVS  158 (266)
T ss_pred             --cchhheeeeeecccceehhhhhcCCcceeEEEechhhccccccCCchhhhccCHHHHHHHHHHhhcCccccccceeec
Confidence              46999999999999999999999999999999999999999 77899999999999999999999999973333  22


Q ss_pred             CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC-CC--
Q 022907          156 SSERGEGS--RLNNPDFGYFVHQGPQPLPTGTPVPPI-NPDLGGDVYPGPGAGMYPRRGRFGGDGGMLIGPNHPG-FF--  229 (290)
Q Consensus       156 ~~t~~~~~--~~~~~p~~~~~~~~~~~~P~g~~~pp~-~~~g~~dl~p~~~~~~~p~~~~~~~~ggm~~~p~~p~-f~--  229 (290)
                      ++++...+  -.+++|+++++            .|++ .++|.+++.|.++.  +|.      -|||+++|-.-. |+  
T Consensus       159 s~~t~fpr~i~~d~dplrip~------------~pr~~gn~gps~~~pep~~--~P~------rGg~~~dpl~~Gp~g~~  218 (266)
T KOG4761|consen  159 SSETNFPRKIWKDEDPLRIPG------------TPRVAGNIGPSTHSPEPLD--GPR------RGGMIVDPLRSGPRGLI  218 (266)
T ss_pred             cCCcCCCcccccCCCCccCCC------------CCCcCCCcCcccccCCCCC--CCC------cCCccccccccCCCCCC
Confidence            22222222  24677888742            1121 26888888885444  333      356777654321 11  


Q ss_pred             CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 022907          230 GGEPDLPRGNPWPIPPGARFDPYGPPDVPGLEPNGFIRNSSR  271 (290)
Q Consensus       230 ~~~~~~pg~~~~~~ppgarfDp~gp~~~~~~~P~~~~~~~~~  271 (290)
                      ...+|.++--||+||||||||||||.|.++++|+.+-+.|.+
T Consensus       219 ~~~pg~pn~~PG~vPpgarFdP~gP~g~~~~gpnpdh~~PP~  260 (266)
T KOG4761|consen  219 DPSPGLPNLPPGAVPPGARFDPFGPIGTSPPGPNPDHLPPPG  260 (266)
T ss_pred             CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCccccCCCC
Confidence            145566663469999999999999999999999888776544

>PF11566 PI31_Prot_N: PI31 proteasome regulator N-terminal; InterPro: IPR021625 PI31 is a regulatory subunit of the immuno-proteasome which is an inhibitor of the 20 S proteasome in vitro

Probab=100.00  E-value=1.2e-35  Score=254.34  Aligned_cols=139  Identities=36%  Similarity=0.569  Sum_probs=111.7

Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCCCCCCCccCCccccCCCCceEEEeeCCCCCCceEEEE
Q 022907            9 AVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGSKKVLVK   88 (290)
Q Consensus         9 ~~~~a~~p~i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~~~~~se~LP~gWN~~~~~YsfrY~h~~~~s~~~lLK   88 (290)
                      -++.+++++|++++||||+++||+|+++||||+|++|++..++.+   +|+||++||++.++|+|||+|+++ +++|+||
T Consensus         2 l~~~~~~~~i~~~~D~l~~~~H~~~~~~gF~~vg~~~~~~~~~~~---~~~LP~~WN~~~~~Y~~~Y~~~~~-~~~~~lk   77 (155)
T PF11566_consen    2 LLFKSISPDIKSPHDALALFVHALMLESGFRLVGLGEDAKISSSE---SELLPEGWNSSSDSYAFRYKHPQS-SMQFLLK   77 (155)
T ss_dssp             ---HHCGGG--SHHHHHHHHHHHHHHCTTEEEEEESSS--TT------BSS--TTTTS-SSEEEEEEEETTS---EEEEE
T ss_pred             ccccccccccCCHHHHHHHHHHHHHHHcCCEEeccCCCcCccccc---cccCCHHHcCCCCeeEEEEecCCC-CCeEEEE
Confidence            356788999999999999999999999999999999998765432   689999999999999999999954 8999999


Q ss_pred             EEeeCCeeEEeeeecCCCCeEEEEEccchhhcc-------CCCChhHHHHh--HHHHHHHHHHHHHhhhcCC
Q 022907           89 CLVMNNKLLVDALADGASEPVHLEINVADFVAK-------NGSNYSDQFQN--LEKLVTDVDKEIILQLYGS  151 (290)
Q Consensus        89 ~~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~-------~~~d~~~~fk~--l~~L~~~~k~~Ii~~L~~~  151 (290)
                      |++||++++||+|+.++++|++++|++++||++       ..+++.++|++  +++|+++|+++||+||...
T Consensus        78 ~~~~g~~lvIn~l~~~~~~v~~l~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~ii~~l~~~  149 (155)
T PF11566_consen   78 ALKMGNKLVINALNVGDDKVASLEINVDDYVSESFLPASEDPSDLSSVFKNKRLEDLISLFKTDIIQPLVPG  149 (155)
T ss_dssp             EEEETTEEEEEEEETTTTEEEEEEEEHHHHB-T------TSTT-HHHHBSS--HHHHHHHHHHHTTS-----
T ss_pred             EEEeCCeEEEEeeecCCCcEEEEEEcHHHhhhhhhcccccCCccHHHHHHhhhHHHHHHHHHHHhhcccCCc
Confidence            999999999999999999999999999999997       56789999999  9999999999999999744

PI31 is also an F-box protein Fbxo7.Skp1 binding partner which requires an N-terminal FP domain in both proteins for the interaction to occur via the FP beta sheets. The structure of PI31 FP domain contains a novel alpha/beta-fold and two intermolecular contact surfaces []. ; PDB: 2VT8_B.

>PF08577 PI31_Prot_C: PI31 proteasome regulator ; InterPro: IPR013886 PI31 is a cellular regulator of proteasome formation and of proteasome-mediated antigen processing []

Probab=99.68  E-value=6e-17  Score=122.70  Aligned_cols=62  Identities=48%  Similarity=0.861  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC------CCCCCcccCCCCCCCCCC----CCCCCCCC-CCCCCCCCCcCCCCC
Q 022907          192 PDLGGDVYPGPGAGMYPRRGRF------GGDGGMLIGPNHPGFFGG----EPDLPRGN-PWPIPPGARFDPYGP  254 (290)
Q Consensus       192 ~~g~~dl~p~~~~~~~p~~~~~------~~~ggm~~~p~~p~f~~~----~~~~pg~~-~~~~ppgarfDp~gp  254 (290)
                      +||++|||| +|+..++...++      +++||||++|+||+|...    ..+.++.+ +++||||||||||||
T Consensus         1 ~iG~~DL~P-~G~~~~~~~~p~~~~~~~~~~GGM~~~P~~p~f~~~~~~~~~g~~~~~p~~~vPPGARfDPfGP   73 (73)
T PF08577_consen    1 GIGDSDLYP-PGLPPPPPLRPFPDPPGGGGGGGMIFDPNHPIFGRPHQGGNPGGGGGLPPGGVPPGARFDPFGP   73 (73)
T ss_pred             CCCcccCCC-CCCCCCCCCCcccCCCCCCCCCCCCcCCCCCCCCcccccCCCCccccCCCCCCCCCCccCCCCC
Confidence            489999999 888755322111      246899999999999651    12334444 489999999999997

>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]

Probab=83.93  E-value=37  Score=31.66  Aligned_cols=26  Identities=27%  Similarity=0.184  Sum_probs=15.8

Q ss_pred             CceEEEEEEee-CCeeEEeeeecCCCC
Q 022907           82 SKKVLVKCLVM-NNKLLVDALADGASE  107 (290)
Q Consensus        82 s~~~lLK~~~m-G~~LvVn~i~~~~~~  107 (290)
                      ..+|.|.-.-= -.+++|-+++++++-
T Consensus        70 ~d~Yal~Y~~~gs~kyLvka~~~e~sL   96 (266)
T KOG4761|consen   70 DDEYALRYTDPGSKKYLVKALAMEDSL   96 (266)
T ss_pred             CceeEEEEecCcchhheeeeeecccce
Confidence            35676665444 355777777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
2vt8_A	153	HPI31, PI31, proteasome inhibitor PI31 subunit; po	2e-32

>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens} Length = 153

 Score =  116 bits (292), Expect = 2e-32
 Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 12  RAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNY 71
            +A P      D L   +H   +  G+     G     +       E+    WN   D Y
Sbjct: 11  ASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPN---DKKSELLPAGWNNNKDLY 67

Query: 72  AFVYVKPEKGSKKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFV-AKNGSNYSDQF 130
              Y   + GS+K+LVK + + + ++++ L  G+ +   L +N+ D++ A++  ++   +
Sbjct: 68  VLRYEYKD-GSRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFHRTY 126

Query: 131 QNLEKLVTDVDKEIILQLYGSSKPAS 156
           +N E+L + +   II  ++   + A+
Sbjct: 127 KNSEELRSRIVSGIITPIHEQWEKAN 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
2vt8_A	153	HPI31, PI31, proteasome inhibitor PI31 subunit; po	100.0

>2vt8_A HPI31, PI31, proteasome inhibitor PI31 subunit; polymorphism, hydrolase inhibitor; 2.6A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=280.60  Aligned_cols=146  Identities=19%  Similarity=0.332  Sum_probs=132.2

Q ss_pred             ChHHHHHHHHHHCCCCCChhhHHHHHHHHHHhhcCCeeeccCCCCCCCCCCCCCCccCCccccCCCCceEEEeeCCCCCC
Q 022907            3 NDKSVMAVIRAARPTFRNDFDKLAFAVHATFLASGHVLTATGPSADTDFTSPSTDEVGIDHWNELDDNYAFVYVKPEKGS   82 (290)
Q Consensus         3 ~~~avL~~~~a~~p~i~s~~Dalal~vHa~ml~~GFrlvG~ge~~~~~~~~~~~se~LP~gWN~~~~~YsfrY~h~~~~s   82 (290)
                      +..+++.++++++++|++++||||+++||+|+++||||+|+||++..++   +.+|+||++||++.++|+|||+|+++ +
T Consensus         2 ~~~~~e~l~~s~~~~i~~~~Dal~~~vH~~m~~~gfr~~g~g~~~~~~~---~~se~LP~~WN~~~~~Y~f~Y~h~~~-~   77 (153)
T 2vt8_A            2 HMAGLEVLFASAAPAITCRQDALVCFLHWEVVTHGYCGLGVGDQPGPND---KKSELLPAGWNNNKDLYVLRYEYKDG-S   77 (153)
T ss_dssp             CCSCHHHHHHHHGGGCCSHHHHHHHHHHHHHHTTTEEEEEESSSCCTTC---CCBSSCCTTTTSCSSEEEEEEEESCC--
T ss_pred             cchHHHHHHHhhhcccCCHHHHHHHHHHHHHHhcCCEeccCCCccCccc---ccccCCCHHHcCCCCeEEEEeccCCC-C
Confidence            4457889999999999999999999999999999999999999987432   46799999999888999999999954 9


Q ss_pred             ceEEEEEEeeCCeeEEeeeecCCCCeEEEEEccchhhcc-CCCChhHHHHhHHHHHHHHHHHHHhhhcCCC
Q 022907           83 KKVLVKCLVMNNKLLVDALADGASEPVHLEINVADFVAK-NGSNYSDQFQNLEKLVTDVDKEIILQLYGSS  152 (290)
Q Consensus        83 ~~~lLK~~~mG~~LvVn~i~~~~~~v~slei~v~d~V~~-~~~d~~~~fk~l~~L~~~~k~~Ii~~L~~~~  152 (290)
                      ++|+|||++||++|+||+++.++++|++++|++++||++ ..+++.++|+++++|+++||++||+||....
T Consensus        78 ~~~lLk~~~lg~~lvin~l~~~~~~v~~l~i~~~~~V~~~~~~~~~~~~~~l~~L~~~~k~~li~~l~~~~  148 (153)
T 2vt8_A           78 RKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFHRTYKNSEELRSRIVSGIITPIHEQW  148 (153)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTTTEEEEEEEEHHHHBCTTSTTCHHHHBSCHHHHHHHHHHHTTSCC----
T ss_pred             CeEEEEEEEeCCEEEEEEEecCCCCEEEEEEcHHHhhcccccCCHHHHhhhHHHHHHHHHHHhhhhhcCCC
Confidence            999999999999999999999999999999999999999 7789999999999999999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00