Citrus Sinensis ID: 022913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MLSSCSHSLSHRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHccccccccccccccccccHHHHHHHccHHcEEEcccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEcccccccccccccccccccccccccccEEEEEEEccccccccccccccHccccHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEHEHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mlsscshslshrpivlpsisklrvssrpsssslsrtsrifdSTLKLTRNKWkiscfrheeispenskpesiehfvqdelvkpeidqsnpikrdWATTLREAADGVLRAIgsrwtvpwTAETILQVMLLWVAAFWFIGSwvipfaahvagfskesLTFRGQALFSLVTDVTEGLAGIAILHRClsrfhplpsdwfrfslkgnwqLDVALGCLMFPLVNRlsqfnlnllplmpsapvtiSSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFrgfllpsltkympvwcayw
Flexible Loop (DISEMBL)
mlsscshslshrpivlpsisklrvssrpsssslsrtsrifdstlkltrnKWKISCFRheeispenskpesIEHFVQDElvkpeidqsnpikrdwATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRgfllpsltkympvwcAYW
Low Complexity Region (SEG)
MLSSCSHSLSHRPIVLPsisklrvssrpsssslsrtsrifdsTLKLTRNKWKISCFRHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Disordered region (IsUnstruct)
**************************************IFDSTLKLTRNKWKISCFR********************************IKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Disordered Region (DISOPRED)
****************************************************ISCFRHEEI********************************WATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLP**********SVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Disordered Region (DISEMBL)
**********HRPIVLPSISK**************TSRIFDSTLKLTRNKWKISCFRHE**********SIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Disordered Region (DISPRO)
*********************L*VSS*PSSSSLSRTSRIFDSTLKLTRNKWKISCFRHE*************HFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSSCSHSLSHRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
224075030	343	predicted protein [Populus trichocarpa]	0.968	0.819	0.770	1e-124
255537635	355	prenyl-dependent CAAX protease, putative	0.951	0.777	0.759	1e-119
225426098	347	PREDICTED: uncharacterized protein LOC10	0.993	0.829	0.716	1e-118
224053831	300	predicted protein [Populus trichocarpa]	0.827	0.8	0.812	1e-111
356528859	341	PREDICTED: uncharacterized protein LOC10	0.975	0.829	0.680	1e-108
356513325	341	PREDICTED: uncharacterized protein LOC10	0.975	0.829	0.673	1e-107
297793631	347	CAAX amino terminal protease family prot	0.948	0.792	0.689	1e-103
18424393	347	CAAX amino terminal protease family prot	0.941	0.786	0.683	1e-102
359490443	378	PREDICTED: uncharacterized protein LOC10	0.993	0.761	0.604	5e-99
9759339	312	unnamed protein product [Arabidopsis tha	0.810	0.753	0.738	2e-98

>gi|224075030|ref|XP_002304526.1| predicted protein [Populus trichocarpa] gi|222841958|gb|EEE79505.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 249/283 (87%), Gaps = 2/283 (0%)

Query: 8   SLSHRPIVLPSISKLRVSSRPSSSSL--SRTSRIFDSTLKLTRNKWKISCFRHEEISPEN 65
           SLS +PI+ PSI KLRV +RP +SSL  +R +RIF+S  KL ++KW++SCFR+EEIS  N
Sbjct: 3   SLSQQPILTPSIPKLRVFNRPRNSSLFAARNNRIFESNSKLPKHKWRVSCFRNEEISQVN 62

Query: 66  SKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQV 125
              +S+E +V +ELVKPE+D S  +KRDW ++LREAA+ VLRA GS WTVPWTAETI+QV
Sbjct: 63  PGSDSVERYVPEELVKPELDNSTNVKRDWISSLREAANVVLRAFGSSWTVPWTAETIVQV 122

Query: 126 MLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSR 185
           MLLWV +FWFIGSW+IPFAAH+AGF+KESLTFRGQALFSLVTDVTEGLAGIAILH CLSR
Sbjct: 123 MLLWVVSFWFIGSWLIPFAAHIAGFNKESLTFRGQALFSLVTDVTEGLAGIAILHCCLSR 182

Query: 186 FHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIM 245
           FHPL SDWFRF LKGNW  DVALGCLMFPLVNRLSQFNL+LLP++PS PVT+SSVEQSI 
Sbjct: 183 FHPLSSDWFRFRLKGNWLFDVALGCLMFPLVNRLSQFNLSLLPILPSTPVTLSSVEQSIA 242

Query: 246 ARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           ARDPVAM LYAIVVSVCAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct: 243 ARDPVAMVLYAIVVSVCAPVWEEIVFRGFLLPSLTRYMPVWCA 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537635|ref|XP_002509884.1| prenyl-dependent CAAX protease, putative [Ricinus communis] gi|223549783|gb|EEF51271.1| prenyl-dependent CAAX protease, putative [Ricinus communis]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 248/283 (87%), Gaps = 7/283 (2%)

Query: 13  PIVLPSISKLRVSSRPSSSS---LSRTSRIFDSTLKLTRNKWKISCFRHEEISPENSKPE 69
           PI+LPSIS++RV +RP   S   ++R  RIF+S+ KL++NKWKISCF+HE+ SP N K +
Sbjct: 15  PILLPSISRVRVINRPGILSPPLVTRNVRIFESSSKLSKNKWKISCFKHEDFSPVNPKSD 74

Query: 70  SIEHFVQDELVK-PEIDQ-SNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVML 127
            +EH + ++L K PE+D  S  +KRDW TTL+EAA  V +AIGS+WTVPWTAETI+QVML
Sbjct: 75  DVEHCLPEKLAKQPELDNNSTDVKRDWITTLQEAAGVVFQAIGSQWTVPWTAETIIQVML 134

Query: 128 LWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFH 187
           LWV +FWFIGSWVIPFAAH+AGF+KESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRF 
Sbjct: 135 LWVVSFWFIGSWVIPFAAHIAGFNKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFC 194

Query: 188 PLPSDWFRFSLKGNWQ--LDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIM 245
           PLPSDWFRFSLKGNW   LDVALGC MFPL+NRLSQ NL+LLP++PSAPVT+SSVEQSI 
Sbjct: 195 PLPSDWFRFSLKGNWAWLLDVALGCFMFPLINRLSQVNLSLLPILPSAPVTLSSVEQSIA 254

Query: 246 ARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           ARDPVAMALYAIVVSVCAPVWEEI+FRGFLLPSLT+YMPVWCA
Sbjct: 255 ARDPVAMALYAIVVSVCAPVWEEILFRGFLLPSLTRYMPVWCA 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426098|ref|XP_002276929.1| PREDICTED: uncharacterized protein LOC100250094 [Vitis vinifera] gi|297742264|emb|CBI34413.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/289 (71%), Positives = 244/289 (84%), Gaps = 1/289 (0%)

Query: 1   MLSSCSHSLSHRPIVLPSISKLRVSSRPSS-SSLSRTSRIFDSTLKLTRNKWKISCFRHE 59
           M SSCSH+LS  P + P+IS+LR+ +RP +   LS   RI +S  K  ++KWKISCFRHE
Sbjct: 1   MWSSCSHALSRCPSLPPTISRLRLPNRPGTLYPLSSGFRISESHSKFPKSKWKISCFRHE 60

Query: 60  EISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTA 119
           + S E  K ESI+  +  ELVKPE ++ + +++DWA++ REAAD +LR IG  W VPWT+
Sbjct: 61  DSSSETPKSESIDDILSGELVKPEFNKPSTVQKDWASSFREAADVILRVIGKPWVVPWTS 120

Query: 120 ETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAIL 179
           ETILQVMLLW+ +FWF+GSW+IPF AHV GFSKESLT+RGQAL+SL+TDV EGLAGIAIL
Sbjct: 121 ETILQVMLLWIVSFWFVGSWMIPFTAHVVGFSKESLTYRGQALYSLLTDVAEGLAGIAIL 180

Query: 180 HRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISS 239
           HRCLSRF PLPSDWFRFSL+GNW  DVA+GCLMFPLVNRLSQFNL+LLPL+PS PVT+SS
Sbjct: 181 HRCLSRFSPLPSDWFRFSLRGNWLADVAIGCLMFPLVNRLSQFNLDLLPLLPSTPVTLSS 240

Query: 240 VEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           VEQSIMARDPVAM LYA+VVSVCAPVWEEIVFRGFLLPSLTKYMPVWC+
Sbjct: 241 VEQSIMARDPVAMGLYALVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCS 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053831|ref|XP_002298001.1| predicted protein [Populus trichocarpa] gi|222845259|gb|EEE82806.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/240 (81%), Positives = 215/240 (89%)

Query: 49  NKWKISCFRHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRA 108
            KW+IS FR+EEIS  N   +S+E +V +ELVKPE+D S  ++ DW ++LREAA  VLRA
Sbjct: 3   QKWRISFFRNEEISQVNPGSDSVERYVPEELVKPELDNSTNVEGDWISSLREAAHVVLRA 62

Query: 109 IGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTD 168
            GSRWTVPWTAETI+QVMLLWV +FWFIGSWVIPFAAH+AGF+KESLTFRGQALFSLVTD
Sbjct: 63  FGSRWTVPWTAETIVQVMLLWVVSFWFIGSWVIPFAAHIAGFNKESLTFRGQALFSLVTD 122

Query: 169 VTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLP 228
           VTEGLAGIAILHRCLSRF PL SDWFRF LKGNW  DVALGCLMFPLVNRLSQFNL+LLP
Sbjct: 123 VTEGLAGIAILHRCLSRFRPLSSDWFRFRLKGNWVFDVALGCLMFPLVNRLSQFNLSLLP 182

Query: 229 LMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           ++PS PVT+SSVEQSI ARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct: 183 ILPSTPVTLSSVEQSIAARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTRYMPVWCA 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528859|ref|XP_003533015.1| PREDICTED: uncharacterized protein LOC100814248 [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/288 (68%), Positives = 227/288 (78%), Gaps = 5/288 (1%)

Query: 1   MLSSCSHSLSHRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEE 60
           MLS+ S+S+  R  +   I  +     P  ++L     I +S  K  +N+  I CFRH+ 
Sbjct: 1   MLSTSSYSVFTRSFLPNPIKGI-----PRPATLRPFPGILESHAKSPKNRLSILCFRHDH 55

Query: 61  ISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAE 120
            SPE  +PE IEH++ +ELV+ E + S+  KRDW +T+++AA+ V + IG RW VPW A 
Sbjct: 56  HSPETPQPEVIEHYLHEELVQSEFNDSSVTKRDWKSTIQKAANEVFKVIGYRWVVPWNAM 115

Query: 121 TILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILH 180
           TILQVMLLW  AFWFIGSW+IPFAAH+ GFSKESLTFRGQALFSLVTDVTEGLAG+AIL 
Sbjct: 116 TILQVMLLWTTAFWFIGSWMIPFAAHITGFSKESLTFRGQALFSLVTDVTEGLAGVAILL 175

Query: 181 RCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSV 240
           RCLSRF PLP DWF FSLKGNWQLDV +GCLMFPLVNRLSQFNL+LLPL+PS PVT+SSV
Sbjct: 176 RCLSRFRPLPPDWFEFSLKGNWQLDVIMGCLMFPLVNRLSQFNLDLLPLLPSTPVTLSSV 235

Query: 241 EQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           EQSI ARDPVAM LYA VVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA
Sbjct: 236 EQSIRARDPVAMLLYATVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513325|ref|XP_003525364.1| PREDICTED: uncharacterized protein LOC100779061 [Glycine max]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/288 (67%), Positives = 225/288 (78%), Gaps = 5/288 (1%)

Query: 1   MLSSCSHSLSHRPIVLPSISKLRVSSRPSSSSLSRTSRIFDSTLKLTRNKWKISCFRHEE 60
           MLS+ S+ +  R   LP+     +   P  ++L    RI +S  K  +N+  I CFRH+ 
Sbjct: 1   MLSTSSYCVFTRSF-LPN----PIKGFPRPATLRPFPRILESHAKSPKNRLSILCFRHDH 55

Query: 61  ISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAE 120
             PE  +PE IEH++ +ELV+ E + S+  KRDW + +++AA+ V + IG  W VPW A 
Sbjct: 56  HYPETPQPEVIEHYLHEELVQSEFNDSSVTKRDWKSAIQKAANEVFKVIGYGWVVPWNAM 115

Query: 121 TILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILH 180
           TILQVMLLW  AFWFIGSW+IPFAAH+ GFSKESLTFRGQALFSLVTDVTEGLAG+AIL 
Sbjct: 116 TILQVMLLWTTAFWFIGSWMIPFAAHITGFSKESLTFRGQALFSLVTDVTEGLAGVAILL 175

Query: 181 RCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSV 240
           RCLSRF PLP DWF+FSLKG WQLDV  GCLMFPLVNRLSQFNL+LLPL+PS PVT+SSV
Sbjct: 176 RCLSRFRPLPPDWFKFSLKGYWQLDVITGCLMFPLVNRLSQFNLDLLPLLPSTPVTLSSV 235

Query: 241 EQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           EQSIMARDPVAM LYA VVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA
Sbjct: 236 EQSIMARDPVAMLLYATVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793631|ref|XP_002864700.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297310535|gb|EFH40959.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/283 (68%), Positives = 226/283 (79%), Gaps = 8/283 (2%)

Query: 9   LSHRPIVLPSISKLRVSSRPS-SSSLSRTSRIFDST-LKLTRNKWKISCFRHEEISPENS 66
           L HRP +  S SK RV  R   S +L++ S +  S+  K  ++KWKI CFR+E+ +PENS
Sbjct: 12  LRHRPALSSSRSKFRVPRRTVFSPALTKISPLTASSPSKSAKHKWKILCFRNEDSAPENS 71

Query: 67  KPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVM 126
                EHFV +ELVKP+ D     K+DW  TL++AAD VL+AIG+RW VPWT ETI+QVM
Sbjct: 72  -----EHFVPEELVKPDQDSPCTDKKDWKATLQKAADTVLKAIGTRWKVPWTVETIVQVM 126

Query: 127 LLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRF 186
           LLWVAAFWFIGSW+IPF AH++GF KESLTFRGQALFSL+TDVTEGLAGIAILHRCLS F
Sbjct: 127 LLWVAAFWFIGSWMIPFMAHISGFHKESLTFRGQALFSLITDVTEGLAGIAILHRCLSMF 186

Query: 187 HPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQ-FNLNLLPLMPSAPVTISSVEQSIM 245
            PL SDWFRF+LKGNWQLDV +GC MFP VNRLSQ     L     S+PV++SSVEQSIM
Sbjct: 187 RPLASDWFRFTLKGNWQLDVIIGCFMFPFVNRLSQLNLNLLPLPPTSSPVSLSSVEQSIM 246

Query: 246 ARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           ARDPVAMALYA+VVS+CAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct: 247 ARDPVAMALYAVVVSICAPVWEEIVFRGFLLPSLTRYMPVWCA 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424393|ref|NP_568928.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|17528994|gb|AAL38707.1| unknown protein [Arabidopsis thaliana] gi|20465443|gb|AAM20181.1| unknown protein [Arabidopsis thaliana] gi|21554615|gb|AAM63634.1| unknown [Arabidopsis thaliana] gi|332009990|gb|AED97373.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 222/281 (79%), Gaps = 8/281 (2%)

Query: 11  HRPIVLPSISKLRVSSRPS-SSSLSRTSRIFDST-LKLTRNKWKISCFRHEEISPENSKP 68
           HRP +  S SK RV  R   S +L++ S +  S+  K  ++KWKI CFR+E+ +PEN   
Sbjct: 14  HRPALSSSRSKFRVPCRTVFSPALTKISPLTASSPSKSAKHKWKILCFRNEDSAPENP-- 71

Query: 69  ESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVPWTAETILQVMLL 128
              EHFV +ELVKP+ D     K DW  T ++AAD VL+AIG+RW VPWT ETI+QVMLL
Sbjct: 72  ---EHFVPEELVKPDQDSPCTDKTDWKATFQKAADAVLKAIGTRWKVPWTVETIVQVMLL 128

Query: 129 WVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIAILHRCLSRFHP 188
           WVAAFWFIGSW+IPF AH++GF KESLTFRGQALFSL+TDVTEGLAGIAILHRCLS F P
Sbjct: 129 WVAAFWFIGSWMIPFMAHISGFHKESLTFRGQALFSLITDVTEGLAGIAILHRCLSMFRP 188

Query: 189 LPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQ-FNLNLLPLMPSAPVTISSVEQSIMAR 247
           L SDWFRF+LKGNWQLDV +GC MFP VNRLSQ     L     S+PV++SSVEQSIMAR
Sbjct: 189 LASDWFRFTLKGNWQLDVIIGCFMFPFVNRLSQLNLNLLPLPPTSSPVSLSSVEQSIMAR 248

Query: 248 DPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           DPVAMALYA+VVS+CAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct: 249 DPVAMALYAVVVSICAPVWEEIVFRGFLLPSLTRYMPVWCA 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490443|ref|XP_002275682.2| PREDICTED: uncharacterized protein LOC100254162 [Vitis vinifera]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 176/291 (60%), Positives = 227/291 (78%), Gaps = 3/291 (1%)

Query: 1   MLSSCSHSLSHRP-IVLPSISKLRVSSRPSSS-SLSRTSRIFDSTLKLTRNKWKISCFRH 58
           M + C  +LSH P ++ P IS++R+S+ P +S SL++  RI D+  + ++NKW+ SC R 
Sbjct: 30  MSAPCCRTLSHYPSLISPPISRIRISNLPRTSLSLNQRFRIVDTLSRYSKNKWRGSCHRQ 89

Query: 59  EEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSR-WTVPW 117
           EE S E  + E++E  + +EL KPE++QS+ +K+D  + +R+A        G + WTVPW
Sbjct: 90  EESSAEIPEFETVEDKLPEELAKPEVEQSDKLKKDCVSKVRKALKAADAFFGMKPWTVPW 149

Query: 118 TAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGIA 177
           TA TILQVMLLW+A+FW +GSW+IPF AH AGF KE++T RGQAL+ L+ +VTEGL+GIA
Sbjct: 150 TAMTILQVMLLWIASFWLVGSWIIPFLAHKAGFRKETMTHRGQALYGLLGEVTEGLSGIA 209

Query: 178 ILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTI 237
           ILH CL+RFHPLPSDWFR SL+G W  DV LGCLMFPLVNRLSQ N NLLP+ PS PVT 
Sbjct: 210 ILHICLARFHPLPSDWFRLSLEGKWHFDVGLGCLMFPLVNRLSQINENLLPVAPSTPVTG 269

Query: 238 SSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
           SSV+QSI+ARDP+AMALYA+ +SVCAP+WEEI FRGFLLPSLT+YMPVWC+
Sbjct: 270 SSVQQSIVARDPLAMALYAVFLSVCAPIWEEIFFRGFLLPSLTRYMPVWCS 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759339|dbj|BAB09848.1| unnamed protein product [Arabidopsis thaliana]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/241 (73%), Positives = 200/241 (82%), Gaps = 6/241 (2%)

Query: 49  NKWKISCFRHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRA 108
            KWKI CFR+E+ +PEN      EHFV +ELVKP+ D     K DW  T ++AAD VL+A
Sbjct: 19  QKWKILCFRNEDSAPENP-----EHFVPEELVKPDQDSPCTDKTDWKATFQKAADAVLKA 73

Query: 109 IGSRWTVPWTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTD 168
           IG+RW VPWT ETI+QVMLLWVAAFWFIGSW+IPF AH++GF KESLTFRGQALFSL+TD
Sbjct: 74  IGTRWKVPWTVETIVQVMLLWVAAFWFIGSWMIPFMAHISGFHKESLTFRGQALFSLITD 133

Query: 169 VTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQ-FNLNLL 227
           VTEGLAGIAILHRCLS F PL SDWFRF+LKGNWQLDV +GC MFP VNRLSQ     L 
Sbjct: 134 VTEGLAGIAILHRCLSMFRPLASDWFRFTLKGNWQLDVIIGCFMFPFVNRLSQLNLNLLP 193

Query: 228 PLMPSAPVTISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWC 287
               S+PV++SSVEQSIMARDPVAMALYA+VVS+CAPVWEEIVFRGFLLPSLT+YMPVWC
Sbjct: 194 LPPTSSPVSLSSVEQSIMARDPVAMALYAVVVSICAPVWEEIVFRGFLLPSLTRYMPVWC 253

Query: 288 A 288
           A
Sbjct: 254 A 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
TAIR|locus:2175836	347	AT5G60750 "AT5G60750" [Arabido	0.975	0.815	0.668	2.3e-101
TAIR|locus:2012487	353	AT1G14270 [Arabidopsis thalian	0.579	0.475	0.266	1.3e-05

TAIR|locus:2175836 AT5G60750 "AT5G60750" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 196/293 (66%), Positives = 222/293 (75%)

Query:     1 MLSSCSHS--LSHRPIVLPXXXXXXX--XXXXXXXXXXXXXXXXXXTLKLTRNKWKISCF 56
             + SSCS S  L HRP +                               K  ++KWKI CF
Sbjct:     2 LTSSCSSSSLLCHRPALSSSRSKFRVPCRTVFSPALTKISPLTASSPSKSAKHKWKILCF 61

Query:    57 RHEEISPENSKPESIEHFVQDELVKPEIDQSNPIKRDWATTLREAADGVLRAIGSRWTVP 116
             R+E+ +PEN  PE   HFV +ELVKP+ D     K DW  T ++AAD VL+AIG+RW VP
Sbjct:    62 RNEDSAPEN--PE---HFVPEELVKPDQDSPCTDKTDWKATFQKAADAVLKAIGTRWKVP 116

Query:   117 WTAETILQVMLLWVAAFWFIGSWVIPFAAHVAGFSKESLTFRGQALFSLVTDVTEGLAGI 176
             WT ETI+QVMLLWVAAFWFIGSW+IPF AH++GF KESLTFRGQALFSL+TDVTEGLAGI
Sbjct:   117 WTVETIVQVMLLWVAAFWFIGSWMIPFMAHISGFHKESLTFRGQALFSLITDVTEGLAGI 176

Query:   177 AILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMP-SAPV 235
             AILHRCLS F PL SDWFRF+LKGNWQLDV +GC MFP VNRLSQ NLNLLPL P S+PV
Sbjct:   177 AILHRCLSMFRPLASDWFRFTLKGNWQLDVIIGCFMFPFVNRLSQLNLNLLPLPPTSSPV 236

Query:   236 TISSVEQSIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA 288
             ++SSVEQSIMARDPVAMALYA+VVS+CAPVWEEIVFRGFLLPSLT+YMPVWCA
Sbjct:   237 SLSSVEQSIMARDPVAMALYAVVVSICAPVWEEIVFRGFLLPSLTRYMPVWCA 289

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2012487 AT1G14270 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 49/184 (26%), Positives = 78/184 (42%)

Query:   112 RWTVPWTAETILQVMLLWVAAFWFIGSW---VIPFAAHVAGFSKESLTFRGQA-LFSLVT 167
             RW VPW  +T+         +F   G     VIPF     G   E LT   +A +  L  
Sbjct:    98 RWEVPWGWQTVSLTSFACALSFVLTGLTEMAVIPFL----GIDVEKLTLDDKAEILFLDQ 153

Query:   168 DVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLD----VALGCLMFPLVNRLSQFN 223
              +T  +  +A++      F PLP D  R+ L+    L     V  G  +   V  ++   
Sbjct:   154 GLTTAVV-LAVIFTVAKTFDPLPEDILRYDLRQPVNLQKGWLVWGGIGLVGAVGAIALTG 212

Query:   224 LNLLPLMPSAPVT-ISSVEQ--SIMARDPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLT 280
             + L      AP   + S+ +   ++    ++      +  + AP+ EE VFRGF + SLT
Sbjct:   213 VVLSVFRTEAPEREVDSLMKLLPLIGSSNISTLSLVGITGILAPLLEETVFRGFFMVSLT 272

Query:   281 KYMP 284
             K++P
Sbjct:   273 KWVP 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      290       265   0.00093  114 3  11 22  0.40    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  227 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.36u 0.09s 21.45t   Elapsed:  00:00:01
  Total cpu time:  21.36u 0.09s 21.45t   Elapsed:  00:00:01
  Start:  Sat May 11 02:05:28 2013   End:  Sat May 11 02:05:29 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	290
pfam02517	93	pfam02517, Abi, CAAX protease self-immunity	2e-05

>gnl|CDD|217080 pfam02517, Abi, CAAX protease self-immunity

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 249 PVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAYW 290
           P+ + L  +++++ AP+ EE++FRGFLLP L K      A  
Sbjct: 1   PLLLLLLLLLLALLAPIGEELLFRGFLLPRLRKRFWPLLAIL 42

Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	98.3
COG1266	226	Predicted metal-dependent membrane protease [Gener	98.11
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	97.65

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=98.30  E-value=3.5e-06  Score=77.29  Aligned_cols=105  Identities=21%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCceeeecccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccchhHHHHHHhh
Q 022913          167 TDVTEGLAGIAILHRCLSRFHPLPSDWFRFSLKGNWQLDVALGCLMFPLVNRLSQFNLNLLPLMPSAPVTISSVEQSIMA  246 (290)
Q Consensus       167 ~yl~~~v~~L~IL~~~lk~~~plp~gwF~F~~~~~W~~~i~l~ll~~pLV~llsll~~~L~~g~~sn~~~~sale~~L~s  246 (290)
                      .|-..+++...+++.+-|++..+  +|-+.+. +++..++..|.+++.+.+.+..+.....+..+.|+       ..+.+
T Consensus        38 lYp~~~~~~~~~l~~~~~~~~el--~~~~~~~-~~~l~gi~~Gv~~f~lwi~~~~~~~~~~~~~~~~~-------~~i~~  107 (222)
T TIGR03008        38 LYPVKAAIVGAVLAVFRKRCLEL--HLRDLRP-RHLLFSAAVGVAVFVLWVNLDWLLPFQGEPAGFDP-------SQIGN  107 (222)
T ss_pred             hhhHHHHHHHHHHHHHcccchhh--ccccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccch-------hhhhc
Confidence            56677777777777666655432  2322222 23445666666666655555444333322112221       11222


Q ss_pred             c---ChhHHHHHHHHHHHHhhHHHHHHhhhhchhhhhh
Q 022913          247 R---DPVAMALYAIVVSVCAPVWEEIVFRGFLLPSLTK  281 (290)
Q Consensus       247 ~---~~~a~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~  281 (290)
                      .   .....+..++.+++++|+.||++|||++++.+.+
T Consensus       108 ~~~~~~~l~~~~l~~~~l~vpi~EElfFRG~l~~~l~~  145 (222)
T TIGR03008       108 AGLTRWVLIAFRLAGATLVVPVMEELFWRSFLLRYLQQ  145 (222)
T ss_pred             ccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            1   2222333457788999999999999999999976

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=98.11  E-value=3.5e-05  Score=66.93  Aligned_cols=40  Identities=33%  Similarity=0.569  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHhhHHHHHHhhhhchhhhhhcCcccccC
Q 022913          250 VAMALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAY  289 (290)
Q Consensus       250 ~a~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~y~p~w~Ai  289 (290)
                      ......++..++++|+.||++|||++++.+.++++.|.|+
T Consensus       120 ~~~~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~  159 (226)
T COG1266         120 LWLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAI  159 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHH
Confidence            3567788899999999999999999999999999987764

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=97.65  E-value=2.9e-05  Score=59.63  Aligned_cols=37  Identities=35%  Similarity=0.738  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhchhhhhhcCccccc
Q 022913          252 MALYAIVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCA  288 (290)
Q Consensus       252 ~~ll~l~~~VlAPI~EEIIFRGFLL~sLt~y~p~w~A  288 (290)
                      .+...+..++++|+.||++|||++++.+.++.+.+.|
T Consensus         3 ~~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a   39 (91)
T PF02517_consen    3 FLIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFA   39 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3566778899999999999999999999999654433

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00