Citrus Sinensis ID: 022970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Secondary Structure (PSIPRED)
cccccccccccccEEEEccccccccHHHHHHccccccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEccccccccccEEEEcccccHcccEEccccccEEEcccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcEEEEEHcHccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
maghfpsfykglqvsrckvwniidRTTVVKLERYHLKHhirgakdrsiyHQKIKIKHlanaasghplqsnqpddykpksplnSVINALDAFyrfsrphtvigTALSIVSVALLAVEkvsdisplfFTGVLEAIAAALMMNIYIVGlnqlsdieidklplLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQthvyrrpavfskpLIFATAFMSFFSVVIALFkdvpdlegdktfgiRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Flexible Loop (DISEMBL)
maghfpsfykglqvsrckvwnIIDRTTvvkleryhlkhhirgakdrsiyHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Low Complexity Region (SEG)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Disordered region (IsUnstruct)
****FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLA***********************SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALI*
Disordered Region (DISOPRED)
************************************************************************************INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Disordered Region (DISEMBL)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Disordered Region (DISPRO)
****FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASG**************SPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.916	0.674	0.523	2e-84
B7FA90	404	Probable homogentisate ph	yes	no	0.826	0.591	0.553	2e-79
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.889	0.626	0.362	3e-45
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.889	0.628	0.347	5e-42
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.719	0.538	0.257	1e-13
Q0D576	379	Probable homogentisate ph	no	no	0.408	0.311	0.333	9e-10

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/338 (52%), Positives = 217/338 (64%), Gaps = 73/338 (21%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIR--GAKDRSIYHQKIKIKHLANAASGHPLQS 69
           ++V RC      D + VV   ++   + +R  G     + + K K +   NA +G     
Sbjct: 32  IRVLRC------DSSKVVAKPKFR-NNLVRPDGQGSSLLLYPKHKSRFRVNATAG----- 79

Query: 70  NQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGV 129
            QP+ +   S   S  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG+
Sbjct: 80  -QPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGI 138

Query: 130 LEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------LR 161
           LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       L 
Sbjct: 139 LEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLG 198

Query: 162 W------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQT 191
           W                              KRFA+ AAMCILAVRA++VQ+AFYLH+QT
Sbjct: 199 WIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQT 258

Query: 192 HVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTC 251
           HV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRVFWTC
Sbjct: 259 HVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTC 318

Query: 252 ISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           ++LL++AY VAILVGATSPF WSK+I+ +G  ILA  L
Sbjct: 319 VTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTL 356

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/300 (55%), Positives = 202/300 (67%), Gaps = 61/300 (20%)

Query: 50  HQKIKIKHLANAA--SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSI 107
           H +I  +  +++A  SG PLQS+  + +   S    + ++LDAFYRFSRPHTVIGTALSI
Sbjct: 69  HHRIPHRPTSSSADASGQPLQSSA-EAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSI 127

Query: 108 VSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL--- 159
           VSV+LLAVE +SD+SPLF TG+LEA+ AAL MNIYIVGLNQL DIEIDK     LPL   
Sbjct: 128 VSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASG 187

Query: 160 --------------------LRW------------------------------KRFAVAA 169
                               L W                              KR AV A
Sbjct: 188 EYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVA 247

Query: 170 AMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEG 229
           A+CILAVRAV+VQLAF+LH+QT V+RRPAVF++PLIFATAFM+FFSVVIALFKD+PD+EG
Sbjct: 248 ALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEG 307

Query: 230 DKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           D+ FGI++F+VRLGQK+VFW C+ LLE+AY VAIL+GATS   WSK  T +G +ILA IL
Sbjct: 308 DRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAIL 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/320 (36%), Positives = 172/320 (53%), Gaps = 63/320 (19%)

Query: 31  LERYHLKHH--IRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINAL 88
             +++LK H  +      S   ++ + K++ NA S    +  +P    P+S  +SV +AL
Sbjct: 56  FSKHNLKQHYKVNEGGSTSNTSKECEKKYVVNAISEQSFE-YEPQTRDPESIWDSVNDAL 114

Query: 89  DAFYRFSRPHTVIGTAL-----SIVSVALLA--------------------------VEK 117
           D FY+F RP+ +    L     S+V+V  L+                          + +
Sbjct: 115 DIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQ 174

Query: 118 VSDIS--------------PLFFTGVLEAIAAALMMNI---YIVGLNQL----------- 149
           + DI                L F  V+   A++L++ +   +IV    L           
Sbjct: 175 LCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVA 234

Query: 150 SDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATA 209
           S   +D LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA
Sbjct: 235 SAYNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTA 293

Query: 210 FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS 269
            +S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+ Y V ILVGATS
Sbjct: 294 IVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATS 353

Query: 270 PFAWSKLITDLGRSILALIL 289
           P  WSK+IT LG ++LA +L
Sbjct: 354 PILWSKIITVLGHAVLASVL 373

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 168/325 (51%), Gaps = 68/325 (20%)

Query: 27  TVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVIN 86
            V++ ++  L HH +  +  S Y Q+   K +  A S  PL   +     PK+ L+SV N
Sbjct: 54  NVLRFQQPSLDHHYKCIRGGSTY-QECNRKFVVKAISKQPL-GFEAHASNPKNILDSVKN 111

Query: 87  ALDAFYRFSRPHTVIGTALSIVSVALLA-------------------------------V 115
            L AFY FS P+T+IG  L   S +LLA                               V
Sbjct: 112 VLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGV 171

Query: 116 EKVSDIS---------PL------FFTGVLEAIAAA----------------LMMNIYIV 144
            ++ D+          P+      F TGV+  I+AA                L+ N+ ++
Sbjct: 172 NQLYDLEIDKINKPHLPMASGQFSFKTGVI--ISAAFLALSFGFTWITGSWPLICNLVVI 229

Query: 145 GLNQLSDIEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPL 204
             +  +   ID +PLLRWKR+   AAMC+++  A+ + ++++ HMQT V +RP  F + L
Sbjct: 230 A-SSWTAYSID-VPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSL 287

Query: 205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL 264
            F  AFM+F+S+ +AL KD+PD+EGDK  GI +F VRLGQKR FW C+S  E+A+ V IL
Sbjct: 288 GFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGIL 347

Query: 265 VGATSPFAWSKLITDLGRSILALIL 289
            GA+    W+K+ T +G ++LA IL
Sbjct: 348 AGASCSHFWTKIFTGMGNAVLASIL 372

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 72/280 (25%)

Query: 43  AKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIG 102
           +K  S  ++KI I+  +   +    +S+ P        L+ +    +A +RF RPHT+ G
Sbjct: 56  SKFVSTNYRKISIRACSQVGAA---ESDDPV-------LDRIARFQNACWRFLRPHTIRG 105

Query: 103 TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMM-----------NIYIVGLNQLS- 150
           TAL   S AL+    + +   + ++ VL+A++  L +            IY +G+++++ 
Sbjct: 106 TALG--STALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNK 163

Query: 151 --------DIEIDK---------------------------------------LPLLRWK 163
                   D+ +                                         +P LR K
Sbjct: 164 PYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSLYSLGLFLGTIYSVPPLRMK 223

Query: 164 RFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKD 223
           RF VAA + I  VR  ++    Y H        P  +S P+ F T+F++ F++VIA+ KD
Sbjct: 224 RFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKD 282

Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI 263
           +PD+EGD+ F I T   +LG + + +    LL V Y  AI
Sbjct: 283 LPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAI 322

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 11/129 (8%)

Query: 154 IDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAV-----FSKPLIFAT 208
           I  +P  R KR+ VAA + I  VR       F L+   +   R A+     +S P+ F T
Sbjct: 207 IYSVPPFRLKRYPVAAFLIIATVRG------FLLNFGVYYATRAALGLTFQWSSPVAFIT 260

Query: 209 AFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT 268
            F++ F++VIA+ KD+PD+EGD+ + I T   +LG + + +    LL   Y  AI V   
Sbjct: 261 CFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFL 320

Query: 269 SPFAWSKLI 277
            P A+ + +
Sbjct: 321 MPQAFRRTV 329

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
185487419	407	homogentisate phytyltransferase [Manihot	0.979	0.695	0.602	1e-107
255586143	432	bacteriochlorophyll synthase, putative [	0.986	0.659	0.578	1e-103
219842166	414	homogentisate phytyl transferase [Hevea	0.989	0.690	0.578	1e-100
224143686	398	predicted protein [Populus trichocarpa]	0.965	0.701	0.585	1e-100
254596582	407	homogentisate phytyltransferase [Malus x	0.982	0.697	0.553	4e-98
377657555	394	homogentisate phytyltransferase [Brassic	0.923	0.677	0.535	1e-88
374461278	407	aromatic prenyltransferase [Epimedium ac	0.958	0.680	0.526	4e-88
359806410	395	homogentisate phytyltransferase 1, chlor	0.871	0.637	0.580	7e-88
255637849	395	unknown [Glycine max]	0.871	0.637	0.576	4e-87
377657557	394	homogentisate phytyltransferase [Brassic	0.920	0.675	0.536	1e-86

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/345 (60%), Positives = 241/345 (69%), Gaps = 62/345 (17%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH P+    ++VS C+ WN+++R    K + + +KHH+R   +RS  +QK     L +A 
Sbjct: 30  GHSPT---SVRVSGCRTWNVLERHYFAKSQHHQMKHHLRHIVERSTIYQKSDAHFLVHAT 86

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG PL+S +PD Y PKS  NS++NALDAFYRFSRPHTVIGTALSI+SV+LLAVEK+SD+S
Sbjct: 87  SGQPLES-EPDAYSPKSTSNSILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLS 145

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+ AAL+MNIYIVGLNQL+DIEIDK     LPL                  
Sbjct: 146 PLFFTGVLEAVVAALLMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFS 205

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA  AAMCILAVRAV+VQLA
Sbjct: 206 MMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLA 265

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FYLHMQTHVY RPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+FTVRLGQ
Sbjct: 266 FYLHMQTHVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQ 325

Query: 245 KRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           +RVFWTCISLLE+AY VAILVGA S   WSK IT LG +ILA IL
Sbjct: 326 ERVFWTCISLLEIAYGVAILVGAASSHTWSKCITVLGHAILASIL 370

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586143|ref|XP_002533733.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223526358|gb|EEF28652.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/351 (57%), Positives = 240/351 (68%), Gaps = 66/351 (18%)

Query: 4   HFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAAS 63
           H PS     +VSRC+ W I++R  VVK + +++KHH+R + +RS  ++K     LA+AAS
Sbjct: 27  HSPSPIAAFEVSRCRAWTILERHNVVKSQHHYVKHHLRHSAERSTIYRKNDASFLAHAAS 86

Query: 64  GHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGT-------ALSIVSVALLAVE 116
             PLQS +P+ Y PK     ++++LDAFYRFSRPHTVIGT       ALSI+SV+LLA++
Sbjct: 87  EQPLQS-EPEAYIPKKTSIPILDSLDAFYRFSRPHTVIGTVKFNISHALSIISVSLLAIQ 145

Query: 117 KVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------ 159
           K+SD+SPLF TGVLEA+AAALMMNIYIVGLNQL+DIEIDK     LPL            
Sbjct: 146 KLSDLSPLFLTGVLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSVGMGVM 205

Query: 160 -----------------------------------------LRWKRFAVAAAMCILAVRA 178
                                                     RWKRFA  AAMCILAVRA
Sbjct: 206 IVTSFSIMSFWLGWIVGSWPLFWALFISFILGTAYSVNLPLFRWKRFAFVAAMCILAVRA 265

Query: 179 VVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTF 238
           V+VQLAFYLHMQ HVYRRPAVFS+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F
Sbjct: 266 VIVQLAFYLHMQIHVYRRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSF 325

Query: 239 TVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           TVRLGQ+RVFW CISLLE+AY VAILVGA S + WSK IT LG  ILAL+L
Sbjct: 326 TVRLGQERVFWICISLLEIAYGVAILVGAASSYTWSKCITVLGHVILALML 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842166|dbj|BAH10640.1| homogentisate phytyl transferase [Hevea brasiliensis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/349 (57%), Positives = 235/349 (67%), Gaps = 63/349 (18%)

Query: 3   GHFPSFYKGL---QVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKH-L 58
           GH P   + +   +V+RC+ WN+++R  V K     + HH+R + +RS  +Q+ K  H L
Sbjct: 30  GHSPRVTRSIASVRVARCRTWNVLERYYVAKFPLPRMNHHLRCSVERSNIYQRKKGAHFL 89

Query: 59  ANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV 118
              ASG PL+S + D Y PK   NSV+NALDAFYRFSRPHTVIGTALSI+SV+LLAVEK+
Sbjct: 90  VYTASGQPLES-ESDAYSPKITSNSVLNALDAFYRFSRPHTVIGTALSILSVSLLAVEKL 148

Query: 119 SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-------------- 159
           SD+SPLF TGVLEA+ AALMMN+YIVGLNQL+DIEID+     LPL              
Sbjct: 149 SDLSPLFLTGVLEAVVAALMMNVYIVGLNQLTDIEIDQVNKPYLPLASGEYSKGIGVLNV 208

Query: 160 ---------LRW------------------------------KRFAVAAAMCILAVRAVV 180
                    L W                              KRFA  AAMCIL VRAV+
Sbjct: 209 ASFSIMSFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRFAFVAAMCILVVRAVI 268

Query: 181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTV 240
           VQLAFYLHMQTHVYRRP VFS+PLIFATAFM  FSVVIALFKD+PD+EGDK FGIR+FTV
Sbjct: 269 VQLAFYLHMQTHVYRRPTVFSRPLIFATAFMCLFSVVIALFKDIPDIEGDKIFGIRSFTV 328

Query: 241 RLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           RLGQ+RVFWTCISLLE+AY VAILVGA S   WSK IT LG +ILA IL
Sbjct: 329 RLGQERVFWTCISLLEIAYGVAILVGAASSHTWSKCITVLGHAILASIL 377

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143686|ref|XP_002325040.1| predicted protein [Populus trichocarpa] gi|222866474|gb|EEF03605.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/345 (58%), Positives = 233/345 (67%), Gaps = 66/345 (19%)

Query: 3   GHFPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAA 62
           GH P   + +QV RC+   I++R  VV+ +R+H    ++    +S  +Q+   K L +AA
Sbjct: 31  GHSP---REVQVYRCRARKILERQCVVRFQRHHSGFSVK----KSTIYQENNAKFLVHAA 83

Query: 63  SGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDIS 122
           SG P +S +   Y P+S   SV NALDAFYRFSRPHTVIGTALSI+SV+LLA+EK+SDIS
Sbjct: 84  SGQPFES-ESGAYNPESTSKSVKNALDAFYRFSRPHTVIGTALSILSVSLLAIEKLSDIS 142

Query: 123 PLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL------------------ 159
           PLFFTGVLEA+AAALMMNIYIVGLNQL+DIEIDK     LPL                  
Sbjct: 143 PLFFTGVLEAVAAALMMNIYIVGLNQLTDIEIDKVNKPYLPLASGEYSISTGVMIVTSFS 202

Query: 160 -----------------------------------LRWKRFAVAAAMCILAVRAVVVQLA 184
                                              LRWKRFA  AA+CILAVRAV+VQLA
Sbjct: 203 IMSFWLGWVVGSWPLFWALFISFVLGTAYSINLPLLRWKRFAFVAAVCILAVRAVIVQLA 262

Query: 185 FYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQ 244
           FYLHMQTHVY RP V S+PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+FTVRLGQ
Sbjct: 263 FYLHMQTHVYGRPPVLSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQ 322

Query: 245 KRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
            RVFWTCISLLE+AY VAILVGA S + WSK IT LG  ILA IL
Sbjct: 323 NRVFWTCISLLEIAYAVAILVGAASSYTWSKYITILGHGILASIL 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254596582|gb|ACT75571.1| homogentisate phytyltransferase [Malus x domestica]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 190/343 (55%), Positives = 236/343 (68%), Gaps = 59/343 (17%)

Query: 5   FPSFYKGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASG 64
           F   Y  ++VSRC+ W+I++    V  +++  + +  G K++S +++    K L NA +G
Sbjct: 29  FSGSYVAVRVSRCRAWDILESYCGVGSQQHLFQRNTGGTKEKSKFYRGHDKKFLVNATAG 88

Query: 65  HPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL 124
           +PL+S +P+ Y PKS  NS+ NA+DAFYRFSRPHTVIGTALSI+SV+LLAV+ +SD+SPL
Sbjct: 89  NPLES-EPEAYNPKSIWNSIKNAIDAFYRFSRPHTVIGTALSIISVSLLAVKNLSDLSPL 147

Query: 125 FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-------------------- 159
           FFTGVLEA+ AA  MNIYIVGLNQLSDI+IDK     LPL                    
Sbjct: 148 FFTGVLEAVVAAFFMNIYIVGLNQLSDIDIDKVNKPYLPLASGEYSVGTGIMIVTSFLIM 207

Query: 160 ---------------------------------LRWKRFAVAAAMCILAVRAVVVQLAFY 186
                                            LRWKR AV AAMCILAVRAV+VQLAF+
Sbjct: 208 SFWLGWVVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVVAAMCILAVRAVIVQLAFF 267

Query: 187 LHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKR 246
           LHMQ HVY+RPA FS+PLIFATAFMSFFSVVIALFKD+PD++GDK FGIR+FTVR+GQKR
Sbjct: 268 LHMQMHVYKRPAAFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIRSFTVRMGQKR 327

Query: 247 VFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           VFW CISLLE+AY VA+L+GA+S F  SK +T LG +ILAL+L
Sbjct: 328 VFWICISLLEMAYGVAVLLGASSGFMLSKCVTVLGHTILALVL 370

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/340 (53%), Positives = 223/340 (65%), Gaps = 73/340 (21%)

Query: 10  KGLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIY--HQKIKIKHLANAASGHPL 67
            G +V RC   N++ +       R +L   + G +  S++    + K +  ANA +G   
Sbjct: 31  SGNRVLRC---NVVAKPK----SRTNLVTRLDGQESSSLFLLCSRHKTRFQANATTG--- 80

Query: 68  QSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFT 127
              QP+ + PKS  NS  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FT
Sbjct: 81  ---QPEAFDPKSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFT 137

Query: 128 GVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL----------------------- 159
           G+LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       
Sbjct: 138 GILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFW 197

Query: 160 ------------------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHM 189
                                         LRWKRFA+ AAMCILAVRA++VQ+AFYLH+
Sbjct: 198 LGWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI 257

Query: 190 QTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFW 249
           QTHV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQ+RVFW
Sbjct: 258 QTHVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFW 317

Query: 250 TCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           TC+SLL++AY VAILVGATSPF WSK+I+ +G  ILA  L
Sbjct: 318 TCVSLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTL 357

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/336 (52%), Positives = 221/336 (65%), Gaps = 59/336 (17%)

Query: 12  LQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQ 71
           ++ +    W+  +R    +L+ + + HHI    ++S ++++   K L NA S  P  S +
Sbjct: 36  IRFANSSAWSTQERRYFGQLQGHLINHHITIDAEKSSFYRRADKKGLVNATSEPPFAS-E 94

Query: 72  PDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLE 131
           P+ Y P +   S+ +A DAFYRFSRPHTVIGTALSI+SV+LLA+E++SD+SPLFFTG+LE
Sbjct: 95  PESYNPNNFWRSMQSATDAFYRFSRPHTVIGTALSILSVSLLAIERLSDLSPLFFTGLLE 154

Query: 132 AIAAALMMNIYIVGLNQLSDIEIDKL---------------------------------- 157
           AI AAL MNIYIVGLNQL D+EIDK+                                  
Sbjct: 155 AIVAALFMNIYIVGLNQLFDVEIDKVNKPYLPLASGEYSIGTGILIVAAFAVMSFWLGWF 214

Query: 158 ----PLL--------------------RWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHV 193
               PLL                    RWKRFA+ AAMCILAVRAV+VQLAF+LH+QT V
Sbjct: 215 VGSGPLLWALSISFILGTAYSINLPLLRWKRFALVAAMCILAVRAVIVQLAFFLHIQTFV 274

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCIS 253
           YRRPA+ ++PLIFATAFMSFFSVVIALFKD+PD+EGD  FGIR+FTVRLGQKRVFW C+ 
Sbjct: 275 YRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAIFGIRSFTVRLGQKRVFWICVY 334

Query: 254 LLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           LLE+AY VA+LVGA SP   SKL+T LG  +LA IL
Sbjct: 335 LLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLASIL 370

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806410|ref|NP_001241496.1| homogentisate phytyltransferase 1, chloroplastic-like [Glycine max] gi|81295666|gb|ABB70126.1| homogentisate phytyltransferase VTE2-1 [Glycine max]

 Score =  329 bits (844), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 181/312 (58%), Positives = 212/312 (67%), Gaps = 60/312 (19%)

Query: 36  LKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFS 95
           L HH +  +      +K  IK +  A S    +S +P  + PKS L+SV N+LDAFYRFS
Sbjct: 49  LNHHYKSIEGGCT-CKKCNIKFVVKATSEKSFES-EPQAFDPKSILDSVKNSLDAFYRFS 106

Query: 96  RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155
           RPHTVIGTALSI+SV+LLAVEK+SDISPLFFTGVLEA+ AAL MNIYIVGLNQLSD+EID
Sbjct: 107 RPHTVIGTALSIISVSLLAVEKISDISPLFFTGVLEAVVAALFMNIYIVGLNQLSDVEID 166

Query: 156 K-----LPL-----------------------LRW------------------------- 162
           K     LPL                       L W                         
Sbjct: 167 KINKPYLPLASGEYSFETGVTIVASFSILSFWLGWVVGSWPLFWALFVSFVLGTAYSINV 226

Query: 163 -----KRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
                KRFAV AAMCILAVRAV+VQLAF+LH+QTHVY+RP VFS+ LIFATAFMSFFSVV
Sbjct: 227 PLLRWKRFAVLAAMCILAVRAVIVQLAFFLHIQTHVYKRPPVFSRSLIFATAFMSFFSVV 286

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLI 277
           IALFKD+PD+EGDK FGI++F+VRLGQK VFWTC+ LLE+AY VA+LVGA SP  WSK++
Sbjct: 287 IALFKDIPDIEGDKVFGIQSFSVRLGQKPVFWTCVILLEIAYGVALLVGAASPCLWSKIV 346

Query: 278 TDLGRSILALIL 289
           T LG ++LA IL
Sbjct: 347 TGLGHAVLASIL 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637849|gb|ACU19244.1| unknown [Glycine max]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 180/312 (57%), Positives = 211/312 (67%), Gaps = 60/312 (19%)

Query: 36  LKHHIRGAKDRSIYHQKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFS 95
           L HH +  +      +K  IK +  A S    +S +P  + PKS  +SV N+LDAFYRFS
Sbjct: 49  LNHHYKSIEGGCT-CKKCNIKFVVKATSEKSFES-EPQAFDPKSISDSVKNSLDAFYRFS 106

Query: 96  RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID 155
           RPHTVIGTALSI+SV+LLAVEK+SDISPLFFTGVLEA+ AAL MNIYIVGLNQLSD+EID
Sbjct: 107 RPHTVIGTALSIISVSLLAVEKISDISPLFFTGVLEAVVAALFMNIYIVGLNQLSDVEID 166

Query: 156 K-----LPL-----------------------LRW------------------------- 162
           K     LPL                       L W                         
Sbjct: 167 KINKPYLPLASGEYSFETGVTIVASFSILSFWLGWVVGSWPLFWALFVSFVLGTAYSINV 226

Query: 163 -----KRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
                KRFAV AAMCILAVRAV+VQLAF+LH+QTHVY+RP VFS+ LIFATAFMSFFSVV
Sbjct: 227 PLLRWKRFAVLAAMCILAVRAVIVQLAFFLHIQTHVYKRPPVFSRSLIFATAFMSFFSVV 286

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLI 277
           IALFKD+PD+EGDK FGI++F+VRLGQK VFWTC+ LLE+AY VA+LVGA SP  WSK++
Sbjct: 287 IALFKDIPDIEGDKVFGIQSFSVRLGQKPVFWTCVILLEIAYGVALLVGAASPCLWSKIV 346

Query: 278 TDLGRSILALIL 289
           T LG ++LA IL
Sbjct: 347 TGLGHAVLASIL 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657557|gb|AFB74212.1| homogentisate phytyltransferase [Brassica napus]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/339 (53%), Positives = 221/339 (65%), Gaps = 73/339 (21%)

Query: 11  GLQVSRCKVWNIIDRTTVVKLERYHLKHHIRGAKDRSIY--HQKIKIKHLANAASGHPLQ 68
           G +V RC   N++ +       R +L   + G +  S++    + K +  ANA +G    
Sbjct: 32  GNRVLRC---NVVAKPK----SRNNLVSRLDGQESSSLFLLCSRHKSRFQANATTG---- 80

Query: 69  SNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTG 128
             QP+ + PKS  NS  ++LDAFYRFSRPHTVIGT LSI+SV+ LAVEKVSDISPL FTG
Sbjct: 81  --QPEAFDPKSKPNSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTG 138

Query: 129 VLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL-----------------------L 160
           +LEA+ AALMMNIYIVGLNQLSD+EIDK     LPL                       L
Sbjct: 139 ILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFFIMSFWL 198

Query: 161 RW------------------------------KRFAVAAAMCILAVRAVVVQLAFYLHMQ 190
            W                              KRFA+ AAMCILAVRA++VQ+AFYLH+Q
Sbjct: 199 GWIVGSWPLFWALFVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQ 258

Query: 191 THVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWT 250
           THV+ RP +F++PLIFATAFMSFFSVVIALFKD+PD+EGDK FGIR+F+V LGQKRVFWT
Sbjct: 259 THVFGRPVMFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWT 318

Query: 251 CISLLEVAYTVAILVGATSPFAWSKLITDLGRSILALIL 289
           C+SLL++AY VAILVGATSPF WSK I+ +G  ILA  L
Sbjct: 319 CVSLLQMAYAVAILVGATSPFIWSKFISVVGHVILATTL 357

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.460	0.326	0.601	1.3e-61
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.460	0.338	0.759	1e-52
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.660	0.465	0.449	5.3e-40
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.584	0.430	0.324	1.2e-12

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 431 (156.8 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 80/133 (60%), Positives = 104/133 (78%)

Query:   157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSV 216
             LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA +S +++
Sbjct:   238 LPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAI 297

Query:   217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276
             VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+AY V ILVGATSP  WSK+
Sbjct:   298 VIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKI 357

Query:   277 ITDLGRSILALIL 289
             IT LG +ILA +L
Sbjct:   358 ITVLGHAILASVL 370

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 101/133 (75%), Positives = 121/133 (90%)

Query:   157 LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSV 216
             LPLLRWKRFA+ AAMCILAVRA++VQ+AFYLH+QTHV+ RP +F++PLIFATAFMSFFSV
Sbjct:   224 LPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSV 283

Query:   217 VIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKL 276
             VIALFKD+PD+EGDK FGIR+F+V LGQKRVFWTC++LL++AY VAILVGATSPF WSK+
Sbjct:   284 VIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKV 343

Query:   277 ITDLGRSILALIL 289
             I+ +G  ILA  L
Sbjct:   344 ISVVGHVILATTL 356

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/198 (44%), Positives = 131/198 (66%)

Query:    93 RFSRPHTVIGTA-LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD 151
             + ++P   + +  LS  +V ++    +  I  L F  ++++    L   ++I  +   S 
Sbjct:   182 KINKPDLPLASGKLSFRNVVIITASSL--ILGLGFAWIVDSWP--LFWTVFISCM-VASA 236

Query:   152 IEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFM 211
               +D LPLLRWK++ V  A+  +A  AV   L F+LHMQT V++RP  F +PLIF TA +
Sbjct:   237 YNVD-LPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIV 295

Query:   212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPF 271
             S +++VIALFKD+PD+EGD+ FGI++ ++RLG KRVFW C+SLLE+ Y V ILVGATSP 
Sbjct:   296 SIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPI 355

Query:   272 AWSKLITDLGRSILALIL 289
              WSK+IT LG ++LA +L
Sbjct:   356 LWSKIITVLGHAVLASVL 373

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 58/179 (32%), Positives = 89/179 (49%)

Query:    93 RFSRPHTVIGTA-LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSD 151
             + ++P+  I    LS+ S  LL +     I+ L   G         + ++Y +GL  L  
Sbjct:   167 KVNKPYLPIAAGDLSVQSAWLLVI--FFAIAGLLVVGFN---FGPFITSLYSLGLF-LGT 220

Query:   152 IEIDKLPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFM 211
             I    +P LR KRF VAA + I  VR  ++    Y H        P  +S P+ F T+F+
Sbjct:   221 IY--SVPPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFV 277

Query:   212 SFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP 270
             + F++VIA+ KD+PD+EGD+ F I T   +LG + + +    LL V Y  AI +    P
Sbjct:   278 TLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMP 336

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ1	HPT1_ARATH	2, ., 5, ., 1, ., n, 8	0.5236	0.9169	0.6743	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-106
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-53
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-07
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-06
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  310 bits (796), Expect = e-106
 Identities = 145/243 (59%), Positives = 163/243 (67%), Gaps = 58/243 (23%)

Query: 105 LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----LPL 159
           L I SV+LLAVE +SD SPLFFTG+LEA+  AL+MNIYIVGLNQL DIEIDK     LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 160 -----------------------------------------------------LRWKRFA 166
                                                                LRWKR A
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 167 VAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPD 226
           VAAA CILAVRAVVVQLAF+LHMQTHV  RPAVF++PLIFATAFM FFSVVIALFKD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 227 LEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILA 286
           +EGD+ FGIR+F+VRLGQKRVFW C++LLE+AY  AILVGA+S F WSK+IT LG  ILA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 287 LIL 289
            IL
Sbjct: 241 SIL 243

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  176 bits (448), Expect = 1e-53
 Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 57/246 (23%)

Query: 77  PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTG-VLEAIAA 135
           PK+PL  + + L A ++FSRPHT+IGT+LS++ + L+A+   S+   L   G +L A  A
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIA 61

Query: 136 ALMMNIYIVGLNQLSDIEIDK-----LPL------------------------------- 159
            L  N+YIVGLNQL+DIEID+     LPL                               
Sbjct: 62  CLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPW 121

Query: 160 -------------------LRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVF 200
                              +R KRF + AA+CI  VR V+V L  +LH Q  +     + 
Sbjct: 122 LLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL-GGSVLI 180

Query: 201 SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT 260
              +   T F+  F+  IA+FKD+PD+EGD+ + I TFT+RLG++ VF     +L   Y 
Sbjct: 181 PPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL 240

Query: 261 VAILVG 266
             I VG
Sbjct: 241 GMIAVG 246

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 158 PLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVV 217
           P LR KR  +   + +     +++ L  Y                PL+     +   S+ 
Sbjct: 110 PPLRLKRRPLLGELVVGLAFGLLILLGAYA--------VGGDIPSPLLLLALPVFLLSLA 161

Query: 218 IALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLI 277
           I L  D+ D+EGD+  GIRT  VRLG+KR       LL  A  + +L+          L 
Sbjct: 162 ILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLA 221

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 59/223 (26%)

Query: 93  RFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI 152
           R  RP   +   L  +   LLA   +  +  L       A  A  +       +N L+D 
Sbjct: 18  RLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLARSAGYVINDLADR 72

Query: 153 EIDKL-------PL------LRWKRFAVAA-------------AMCILAVRAVVVQLAFY 186
           EID++       PL      ++                      +  L   A +V    Y
Sbjct: 73  EIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY 132

Query: 187 LHMQTHVYRRP--------------------AVFSK---PLIFATAFMSFFSVVIALFKD 223
             ++    R                      AV                 +++   +   
Sbjct: 133 PFLK----RFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYA 188

Query: 224 VPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVG 266
           + D+EGD+  G+++  V  G K+     + LL +A  + +L+G
Sbjct: 189 IQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLG 230

Length = 289

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 194 YRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKR--VFWTC 251
           Y +  +FS  L++A  F+   S +  +  D+ D+EGD+  G++T  + LG++R   F   
Sbjct: 154 YYQLTIFSLLLLYAV-FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLI 212

Query: 252 ISLLEVAYTVAIL 264
           ++LL +   +  +
Sbjct: 213 LNLLFLILLILGV 225

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.92
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.91
PRK13105	282	ubiA prenyltransferase; Reviewed	99.91
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.91
PLN00012	375	chlorophyll synthetase; Provisional	99.9
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.89
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.89
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.88
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.88
PRK12882	276	ubiA prenyltransferase; Reviewed	99.88
PRK12884	279	ubiA prenyltransferase; Reviewed	99.87
PRK12875	282	ubiA prenyltransferase; Reviewed	99.87
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.87
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.87
PRK13106	300	ubiA prenyltransferase; Reviewed	99.87
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.86
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.86
PRK12874	291	ubiA prenyltransferase; Reviewed	99.85
PRK12872	285	ubiA prenyltransferase; Reviewed	99.85
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.85
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.85
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.85
PRK05951	296	ubiA prenyltransferase; Reviewed	99.84
PRK12895	286	ubiA prenyltransferase; Reviewed	99.83
PRK12886	291	ubiA prenyltransferase; Reviewed	99.82
PLN02922	315	prenyltransferase	99.82
PRK12888	284	ubiA prenyltransferase; Reviewed	99.82
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.81
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.81
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.79
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.79
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.79
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.78
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.78
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.78
PRK12871	297	ubiA prenyltransferase; Reviewed	99.77
PRK13592	299	ubiA prenyltransferase; Provisional	99.76
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.76
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.75
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.74
PRK13591	307	ubiA prenyltransferase; Provisional	99.74
PRK12873	294	ubiA prenyltransferase; Reviewed	99.69
PRK12876	300	ubiA prenyltransferase; Reviewed	99.69
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.6
PRK08238	479	hypothetical protein; Validated	99.28
PLN02776	341	prenyltransferase	99.12
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.09
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	98.96
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	98.23
KOG4581	359	consensus Predicted membrane protein [Function unk	97.89
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	93.63

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.3e-46  Score=349.17  Aligned_cols=184  Identities=78%  Similarity=1.232  Sum_probs=177.0

Q ss_pred             HHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------------------------
Q 022970          106 SIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----------------------------  156 (289)
Q Consensus       106 ~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-----------------------------  156 (289)
                      ++++.+++|+++.+|+++.++.++++++++|+|||+|++|+|||||+||||                             
T Consensus         2 ~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg   81 (280)
T PLN02878          2 GITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMS   81 (280)
T ss_pred             chhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            577889999999899988899999999999999999999999999999999                             


Q ss_pred             -----------------------------ccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 022970          157 -----------------------------LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHVYRRPAVFSKPLIFA  207 (289)
Q Consensus       157 -----------------------------lPplRlKr~p~laa~~Il~v~a~iv~lg~~l~~~t~~~g~p~~~~~~V~~l  207 (289)
                                                   +||+||||+++++++|+++++++++++|+|+|+++.++|+|..+++++++.
T Consensus        82 ~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~  161 (280)
T PLN02878         82 FGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFA  161 (280)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHH
Confidence                                         699999999999999999999999999999999999999988889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHh
Q 022970          208 TAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLITDLGRSILAL  287 (289)
Q Consensus       208 t~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~~~~~~~~~h~~l~~  287 (289)
                      +.|+++|+++|+++||+||+||||++|+||+|+++|+|++.++|.+++.+||++++++|++++..|++++|++||+++++
T Consensus       162 ~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~  241 (280)
T PLN02878        162 TAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILAS  241 (280)
T ss_pred             HHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cC
Q 022970          288 IL  289 (289)
Q Consensus       288 ~l  289 (289)
                      +|
T Consensus       242 ~L  243 (280)
T PLN02878        242 IL  243 (280)
T ss_pred             HH
Confidence            64

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=8.3e-42  Score=322.26  Aligned_cols=212  Identities=41%  Similarity=0.649  Sum_probs=192.7

Q ss_pred             CCCCchhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 022970           77 PKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDI-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID  155 (289)
Q Consensus        77 ~~~~~~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~-~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EID  155 (289)
                      |++.|++++.++++|||++||||++|+.++++.++++|.+..++. +...+..++.+++++.++|+|++++|||||+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            789999999999999999999999999999999999886543322 2235677788899999999999999999999999


Q ss_pred             c-------------------------------------------------------ccchhhhHhHHHHHHHHHHHHHHH
Q 022970          156 K-------------------------------------------------------LPLLRWKRFAVAAAMCILAVRAVV  180 (289)
Q Consensus       156 k-------------------------------------------------------lPplRlKr~p~laa~~Il~v~a~i  180 (289)
                      |                                                       .||.|+||.|+..+.|++.+++.+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i  161 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVI  161 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHH
Confidence            8                                                       899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 022970          181 VQLAFYLHMQTHVYRRPAVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT  260 (289)
Q Consensus       181 v~lg~~l~~~t~~~g~p~~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~  260 (289)
                      +++|.|+|++.. .+++..++..+++++.++++++++++++||+||+||||+.|+||+|+++|+|++.+++.+++.++|+
T Consensus       162 ~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~  240 (308)
T PRK12887        162 VNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYL  240 (308)
T ss_pred             HHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHH
Confidence            999999987654 4445567788888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCchhhHHHHHHHHHHHHHhcC
Q 022970          261 VAILVGATSPFAWSKLITDLGRSILALIL  289 (289)
Q Consensus       261 ~~i~~~~~~~~~~~~~~~~~~h~~l~~~l  289 (289)
                      ++++.++.+...+++.++++||+++++++
T Consensus       241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (308)
T PRK12887        241 GMIAVGLLSLPTVNPAFLIVSHLILLALL  269 (308)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998763

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=3.9e-24  Score=201.39  Aligned_cols=176  Identities=20%  Similarity=0.186  Sum_probs=112.9

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      ....++.+++.+||.+|+.++.++.+|+..+.+ ..|+.+..+   +..+..++..|.+.|++|||||+|+|+       
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~-~~~~~~~~~---~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH-LYTLDPGVL---PLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-cccchhHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            456788899999999999999999999976622 223222322   334555566799999999999999999       


Q ss_pred             ccchhhhHhHHHH--HHHHHHH------HHH-----------HHHHHHHHHHH--HHHhcCCCCc---------------
Q 022970          157 LPLLRWKRFAVAA--AMCILAV------RAV-----------VVQLAFYLHMQ--THVYRRPAVF---------------  200 (289)
Q Consensus       157 lPplRlKr~p~la--a~~Il~v------~a~-----------iv~lg~~l~~~--t~~~g~p~~~---------------  200 (289)
                      +|.+|+++.....  ..+.+..      .+.           +..+..+.|..  ..++.+|...               
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~  163 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPA  163 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHH
Confidence            7777776663221  1111100      000           00011111210  0112222211               


Q ss_pred             ----chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970          201 ----SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (289)
Q Consensus       201 ----~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i  263 (289)
                          ....+.......+|++++|++||+||+||||+.|+||+|+++|+|++.++|..+..++-+...
T Consensus       164 ~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~  230 (292)
T PRK13595        164 LALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW  230 (292)
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence                011111123445678999999999999999999999999999999999999887776655443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.91  E-value=6.2e-24  Score=197.02  Aligned_cols=178  Identities=17%  Similarity=0.154  Sum_probs=118.2

Q ss_pred             HHHHhhhccchhHHHHHHHHHHHHHhhcccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970           89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (289)
Q Consensus        89 ~a~~~l~RPht~igt~l~vl~g~llA~~~~~~-~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl  160 (289)
                      ++|+|++||+|+..+.+++++|+++|...... +++  ...++.+++++.++++++|.+|||||+|+|+       +|.+
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999887322222 222  2234456778888999999999999999999       7788


Q ss_pred             hhhHhHHHHHHHHHHHHHHHH----------HH---HHH-HHHHH----HHhcCCCCcc---------------------
Q 022970          161 RWKRFAVAAAMCILAVRAVVV----------QL---AFY-LHMQT----HVYRRPAVFS---------------------  201 (289)
Q Consensus       161 RlKr~p~laa~~Il~v~a~iv----------~l---g~~-l~~~t----~~~g~p~~~~---------------------  201 (289)
                      +++.........++.+.++++          .+   +.+ .+.++    .++.++...+                     
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~  158 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAP  158 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence            886664333222221111111          00   000 01111    1111111111                     


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970          202 --KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (289)
Q Consensus       202 --~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~  268 (289)
                        ...+++....++++.+++..||++|+||||+.|+||+|+++|+|++.+++..++.++|+..+.....
T Consensus       159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~  227 (283)
T TIGR01476       159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI  227 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1111222334456778999999999999999999999999999999999999999999877754444

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=1.4e-23  Score=196.67  Aligned_cols=174  Identities=22%  Similarity=0.250  Sum_probs=109.5

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------ccchh
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------LPLLR  161 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------lPplR  161 (289)
                      +|.+++.+||++|+.+++++.+|+++| ++.  .++.++..   ++.....-|.+.|++|||||.|.|+      -|.++
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~--~~~~~l~~---~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~   74 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGE--IDWLFVVG---TVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA   74 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCC--CChHHHHH---HHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence            367899999999999999999999999 322  22322222   2222334577778889999999998      12222


Q ss_pred             hhH-----hHHHHHH--HH-HHHHHHHH-H-----------HHHHHHHHH--HHhcCCC---------------------
Q 022970          162 WKR-----FAVAAAM--CI-LAVRAVVV-Q-----------LAFYLHMQT--HVYRRPA---------------------  198 (289)
Q Consensus       162 lKr-----~p~laa~--~I-l~v~a~iv-~-----------lg~~l~~~t--~~~g~p~---------------------  198 (289)
                      +++     ..+....  ++ +....... +           +..+.|...  .++.+|.                     
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~  154 (282)
T PRK13105         75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLA  154 (282)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            222     2111111  11 00000000 0           011111100  0000111                     


Q ss_pred             --CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          199 --VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       199 --~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                        ..+...+++...+.+++.+++++||+||+||||+.|+||+|+++|+|++.+++..+..++++..+..+.
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~  225 (282)
T PRK13105        155 GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPW  225 (282)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              122233445556667789999999999999999999999999999999999999999999988886653

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.91  E-value=1e-22  Score=192.01  Aligned_cols=181  Identities=17%  Similarity=0.257  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---
Q 022970           83 SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLF---FTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---  156 (289)
Q Consensus        83 ~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~---~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---  156 (289)
                      ..+++++.|+|++||+|++.+.+++++|+..+ +   .+++..   ...++.+++++.+++++.|.+|||||+|+|+   
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            45677899999999999999999999999853 2   233221   1223445677788899999999999999999   


Q ss_pred             ----ccchhhhHhHHHHHHHHHHHHH----H------------HHHHH------HHHHHH-HHHhcCCC-----------
Q 022970          157 ----LPLLRWKRFAVAAAMCILAVRA----V------------VVQLA------FYLHMQ-THVYRRPA-----------  198 (289)
Q Consensus       157 ----lPplRlKr~p~laa~~Il~v~a----~------------iv~lg------~~l~~~-t~~~g~p~-----------  198 (289)
                          +|++|++.........++...+    +            .+.++      .+.|.. ..-+|+..           
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHH
Confidence                7788886664332221111110    0            01111      112210 01122111           


Q ss_pred             -------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHH
Q 022970          199 -------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILV  265 (289)
Q Consensus       199 -------------~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~  265 (289)
                                   .++...+++...+++++.++++.||++|+||||+.|+||+|+++|+|++.+++..++..+|+..+..
T Consensus       167 ~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~  246 (306)
T TIGR02056       167 IALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAY  246 (306)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHH
Confidence                         1112222334455668889999999999999999999999999999999999998888888765554


Q ss_pred             HH
Q 022970          266 GA  267 (289)
Q Consensus       266 ~~  267 (289)
                      ..
T Consensus       247 ~~  248 (306)
T TIGR02056       247 LL  248 (306)
T ss_pred             HH
Confidence            43

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.90  E-value=2.9e-22  Score=194.37  Aligned_cols=178  Identities=16%  Similarity=0.261  Sum_probs=119.0

Q ss_pred             hhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--
Q 022970           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLF---FTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--  156 (289)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~---~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--  156 (289)
                      +.-+++++.|++++||+||+...+++++|+..+ +   .+++..   ...++.+++++.++++++|.+|||||+|+|+  
T Consensus        79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~  154 (375)
T PLN00012         79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN  154 (375)
T ss_pred             ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC
Confidence            345677899999999999999999999999742 2   233221   2233566777788889999999999999999  


Q ss_pred             -----ccchhhhHhHHHHHHHHHHH----HHHH------------HHH------HHHHHHH-HHHhcC-CC---------
Q 022970          157 -----LPLLRWKRFAVAAAMCILAV----RAVV------------VQL------AFYLHMQ-THVYRR-PA---------  198 (289)
Q Consensus       157 -----lPplRlKr~p~laa~~Il~v----~a~i------------v~l------g~~l~~~-t~~~g~-p~---------  198 (289)
                           +|++++++...+....++..    .++.            ..+      ..|+|.. ...+|+ +.         
T Consensus       155 ~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        155 EPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHH
Confidence                 88888866643331111100    0000            000      1112210 011111 11         


Q ss_pred             --------------CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970          199 --------------VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (289)
Q Consensus       199 --------------~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i  263 (289)
                                    .++...+++..+++++++++++.||++|+||||+.|++|+|+++|++++.+++..++.+.++..+
T Consensus       235 ~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        235 YISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence                          11122233444566788899999999999999999999999999999999999877777766544

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.89  E-value=1.5e-21  Score=184.64  Aligned_cols=179  Identities=17%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPL-FFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~-~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      ++++++|++++||+|++.+.++++.|++.+. . .++... .+..++.++++..++++++|.+|||+|+|+|+       
T Consensus        24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp  101 (314)
T PRK07566         24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSG-A-FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP  101 (314)
T ss_pred             chHHHHHHHHhCCcchHHHHHHHHHHHHHcC-C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence            4678999999999999999999999887542 1 223221 12223445666777889999999999999999       


Q ss_pred             ccchhhhHhHHHHHHHHHHHHHHHH---------HHH---HH-HHHHH---HHhcC-CCC--------------------
Q 022970          157 LPLLRWKRFAVAAAMCILAVRAVVV---------QLA---FY-LHMQT---HVYRR-PAV--------------------  199 (289)
Q Consensus       157 lPplRlKr~p~laa~~Il~v~a~iv---------~lg---~~-l~~~t---~~~g~-p~~--------------------  199 (289)
                      +|++++++........++.+.++++         .++   +. .+.++   ..+|+ +..                    
T Consensus       102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~  181 (314)
T PRK07566        102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA  181 (314)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            7888887665433222221111111         000   00 11112   01222 111                    


Q ss_pred             -----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHH
Q 022970          200 -----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILV  265 (289)
Q Consensus       200 -----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~  265 (289)
                           ++...+++....++++.++...||++|+|+||+.|+||+|+++|++++.++...++.++|+..+..
T Consensus       182 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~  252 (314)
T PRK07566        182 FGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL  252 (314)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence                 111222233344456678899999999999999999999999999999999999999998876443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.89  E-value=2.4e-21  Score=185.10  Aligned_cols=187  Identities=15%  Similarity=0.280  Sum_probs=119.1

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhccc-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKV-SDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~-~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------  156 (289)
                      ..+++|+|+|+.||+|++ ..++++.|..+|.+.. +++....+ .+..+++.+.++..+++.+|||||+|+|+      
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            456799999999999999 6666667766774321 22221111 11222333334456789999999999999      


Q ss_pred             -ccchhhhHhHHHHHHHHHHHHHH----HH-------------------HHHHHHHHH-HH-HhcCCCC-----------
Q 022970          157 -LPLLRWKRFAVAAAMCILAVRAV----VV-------------------QLAFYLHMQ-TH-VYRRPAV-----------  199 (289)
Q Consensus       157 -lPplRlKr~p~laa~~Il~v~a~----iv-------------------~lg~~l~~~-t~-~~g~p~~-----------  199 (289)
                       +|++|+++...+....++...++    .+                   .+..++|.. .+ +++.+..           
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~  165 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGF  165 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHH
Confidence             78888876643332221111111    00                   001112210 00 1111111           


Q ss_pred             ------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          200 ------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       200 ------------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                                  .+..++++....++++++++++||++|+||||+.|+||+|+++|++++.+++.....+..++.+..+.
T Consensus       166 ~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~  245 (331)
T PRK12392        166 ITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW  245 (331)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                        12223344556667789999999999999999999999999999999999998888788888888887


Q ss_pred             hCchh
Q 022970          268 TSPFA  272 (289)
Q Consensus       268 ~~~~~  272 (289)
                      .+...
T Consensus       246 ~~~~~  250 (331)
T PRK12392        246 SWGFT  250 (331)
T ss_pred             Hhccc
Confidence            76643

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.88  E-value=2.3e-21  Score=180.21  Aligned_cols=178  Identities=21%  Similarity=0.235  Sum_probs=121.8

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hccc---------
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDI--EIDK---------  156 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~--EIDk---------  156 (289)
                      +++|+|++||+++..+.+++++|..+|... ..+++.   .++..++++++++.++|.+|||||+  ++|+         
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            678999999999999999999999988432 344432   2345577888889999999999999  5785         


Q ss_pred             ccchhhhHhHHHHHHHHHHHH----HHHH---------HHHHH----HHHHHHH---hcC-C------------------
Q 022970          157 LPLLRWKRFAVAAAMCILAVR----AVVV---------QLAFY----LHMQTHV---YRR-P------------------  197 (289)
Q Consensus       157 lPplRlKr~p~laa~~Il~v~----a~iv---------~lg~~----l~~~t~~---~g~-p------------------  197 (289)
                      +|++++++........++...    ++.+         .++..    .+.++.-   ++. +                  
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~  158 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGT  158 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHH
Confidence            788888666533222221111    1110         01100    0111100   000 0                  


Q ss_pred             -----CCcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970          198 -----AVFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (289)
Q Consensus       198 -----~~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~  269 (289)
                           ...+..+++......+++.++.+.||++|+||||+.|+||+|+++|+|++.++...+..++|+..+...+..
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        159 YYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 001122223334455677889999999999999999999999999999999999999999999888777654

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.88  E-value=3.4e-21  Score=178.56  Aligned_cols=170  Identities=21%  Similarity=0.298  Sum_probs=114.7

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl  160 (289)
                      ++.|+|++||++++++.++++.|+++|.+.  ..++.   .++.++++..++.+++|.+|||+|+|+|+       +|++
T Consensus         3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG   77 (279)
T PRK09573          3 IKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSG   77 (279)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCC
Confidence            678999999999999999999999888432  22221   23445667778889999999999999999       8899


Q ss_pred             hhhHhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhcCCCCcch---------------------HH
Q 022970          161 RWKRFAVAAAMCILAVRAV---------------VVQLAFYLHMQTHVYRRPAVFSK---------------------PL  204 (289)
Q Consensus       161 RlKr~p~laa~~Il~v~a~---------------iv~lg~~l~~~t~~~g~p~~~~~---------------------~V  204 (289)
                      |+++...+....++...++               +-.+..+.|.. ..++++...+.                     ..
T Consensus        78 ~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~-~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~  156 (279)
T PRK09573         78 RISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAK-DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRI  156 (279)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence            9977754333222211110               00111222221 12322211111                     12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970          205 IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (289)
Q Consensus       205 ~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i  263 (289)
                      +++....+++++++++.||+||+|+||+.|++|+|+++|+|++.+++.....+..+...
T Consensus       157 ~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~  215 (279)
T PRK09573        157 IILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP  215 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            23344556677899999999999999999999999999999999988766555554443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.88  E-value=5.7e-21  Score=176.63  Aligned_cols=170  Identities=21%  Similarity=0.264  Sum_probs=112.7

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl  160 (289)
                      ++.|+|++||++..++.++++.|+++|.+..   ++.  ...+..+++.+++.+++|.+|||+|+|+||       +|++
T Consensus         4 ~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~---~~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G   78 (276)
T PRK12882          4 VRGYLELTRPVNAVVAGVAAFIGAFIAGGIL---SSP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG   78 (276)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence            6889999999999999999999999884422   111  113445667778889999999999999998       8888


Q ss_pred             hhhHhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhcCCCCcchHH---------------------
Q 022970          161 RWKRFAVAAAMCILAVRAV---------------VVQLAFYLHMQTHVYRRPAVFSKPL---------------------  204 (289)
Q Consensus       161 RlKr~p~laa~~Il~v~a~---------------iv~lg~~l~~~t~~~g~p~~~~~~V---------------------  204 (289)
                      |+++...+....++.+.++               +..+..+.|.. .++..|...+..+                     
T Consensus        79 ~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~-~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~  157 (276)
T PRK12882         79 AVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAE-TLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLL  157 (276)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHHHHHHhcccchH
Confidence            8876644322221111110               00111222321 1122232211111                     


Q ss_pred             --HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970          205 --IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (289)
Q Consensus       205 --~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i  263 (289)
                        +.+....++++++++++||+||+||||+.|++|+|+++|+|++.+++.....+..+...
T Consensus       158 ~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~  218 (276)
T PRK12882        158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP  218 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence              11222334456789999999999999999999999999999999988776655554443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=5.4e-21  Score=176.45  Aligned_cols=176  Identities=19%  Similarity=0.250  Sum_probs=119.8

Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------cc
Q 022970           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LP  158 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lP  158 (289)
                      +++++|+|++||++++++.++++.|+++|.+.   +++   ..++.++++..++.+++|.+|||+|+|+|+       +|
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~---~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPL---DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---Cch---HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            47899999999999999999999999888542   221   122344567778889999999999999998       88


Q ss_pred             chhhhHhHHHHHHHHHHHHHHHH------------HHHH-HHHHHHHHhcC-CCCcc----------------------h
Q 022970          159 LLRWKRFAVAAAMCILAVRAVVV------------QLAF-YLHMQTHVYRR-PAVFS----------------------K  202 (289)
Q Consensus       159 plRlKr~p~laa~~Il~v~a~iv------------~lg~-~l~~~t~~~g~-p~~~~----------------------~  202 (289)
                      .+|+++...+....++...++++            .++. +...++..+|+ +...+                      .
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  155 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNE  155 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCch
Confidence            88887665433222221111100            0011 11112221222 21111                      1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          203 PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       203 ~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                      ..+++..+.+++++++++.+|++|+||||+.|+||+|+++|+|++.+++..+....++..++..+
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233345566778899999999999999999999999999999999998888888876555443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=5.6e-21  Score=179.01  Aligned_cols=179  Identities=23%  Similarity=0.266  Sum_probs=107.1

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccC-CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-ccchh
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVS-DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-LPLLR  161 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~-~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-lPplR  161 (289)
                      ..+.++.+++.+||+++..+..+++.|+.+|..... .+++..+.. +..++  +..|.+++++|||+|+|+|+ -|+-|
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~l-l~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVAL-FAYFL--FPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHHH-HHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence            456788899999999999999999999999865332 244422222 21111  34688889999999999999 22211


Q ss_pred             --------hhHhHHHHH--HHHHHHH--------HHHHHHHHH--HHHHH----HHhcCCC-------------------
Q 022970          162 --------WKRFAVAAA--MCILAVR--------AVVVQLAFY--LHMQT----HVYRRPA-------------------  198 (289)
Q Consensus       162 --------lKr~p~laa--~~Il~v~--------a~iv~lg~~--l~~~t----~~~g~p~-------------------  198 (289)
                              .|+....+.  .+.+.+.        ...+.++..  ...++    .++..|.                   
T Consensus        81 ~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~  160 (282)
T PRK12875         81 REREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGLYILPGVAAYAL  160 (282)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHHHHHHHHHHHHH
Confidence                    011111111  0110000        000001110  01111    0011111                   


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          199 ---VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       199 ---~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                         ..++..++  ...++++.+++++||++|+|+||+.|+||+|+++|+|++.+++..+..++-+..++++.
T Consensus       161 ~tg~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~  230 (282)
T PRK12875        161 VSGSLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL  230 (282)
T ss_pred             HcCCCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence               01111111  12246788999999999999999999999999999999999888877776666665553

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.87  E-value=1.8e-20  Score=173.95  Aligned_cols=175  Identities=15%  Similarity=0.130  Sum_probs=121.2

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cc
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP  158 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lP  158 (289)
                      ++.|+|++||++.++....++.|+++|.+..  .++.   .++..+++..++++++|.+|||+|+|+|+         +|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            6899999999999999999998999885432  2221   23445677788899999999999999999         88


Q ss_pred             chhhhHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhcCCCC------------------------
Q 022970          159 LLRWKRFAVAAAMCILAVR---------------AVVVQLAFYLHMQTHVYRRPAV------------------------  199 (289)
Q Consensus       159 plRlKr~p~laa~~Il~v~---------------a~iv~lg~~l~~~t~~~g~p~~------------------------  199 (289)
                      ++|+++...+....+..+.               +....+..+.|  +. .|+-..                        
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y--~~-~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~  153 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIY--PY-TKRFTFLCHYVLGSTYGLAPLAGWVAVIGT  153 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hh-HhccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence            8998777533221111110               00011111222  22 121011                        


Q ss_pred             cc--hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970          200 FS--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (289)
Q Consensus       200 ~~--~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~  270 (289)
                      .+  ...+++....++++.+++++||+||+|||++.|++|+|+++|+|++.++......++++...+.+....
T Consensus       154 ~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~  226 (282)
T TIGR01475       154 ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVG  226 (282)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11  122233344556778899999999999999999999999999999999998888888888877776554

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.87  E-value=1.5e-20  Score=175.13  Aligned_cols=176  Identities=22%  Similarity=0.254  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 022970           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------  156 (289)
Q Consensus        85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--------  156 (289)
                      ...++.+.|+.||++++...++...|..++..   .+..  +..++.+++++++++.+++++||++|+|+||        
T Consensus        10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~R   84 (289)
T COG0382          10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNR   84 (289)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCC
Confidence            34566778888888888888888888887752   2222  3445566888888999999999999999999        


Q ss_pred             -ccchhhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcCC--------------------CC-
Q 022970          157 -LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRRP--------------------AV-  199 (289)
Q Consensus       157 -lPplRlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~p--------------------~~-  199 (289)
                       +|++|.++........++.+.++++               ....+.|  ...|+.+                    .. 
T Consensus        85 Pl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y--~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~  162 (289)
T COG0382          85 PLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY--PFLKRFTFLPQLVLGLAFGLGALAGAAAVG  162 (289)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence             8999997775433222221111111               0011111  1111110                    11 


Q ss_pred             --cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970          200 --FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (289)
Q Consensus       200 --~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~  268 (289)
                        .+.+.+++..+..+++++++++||+||+||||+.|++|+|+.+|++++.+++.... .+......++..
T Consensus       163 ~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~  232 (289)
T COG0382         163 GSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLL  232 (289)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHH
Confidence              24456677788889999999999999999999999999999999999999998777 555555544443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=4.1e-20  Score=174.58  Aligned_cols=178  Identities=17%  Similarity=0.138  Sum_probs=120.8

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      ..++++.|.|++||++.+++..+++.|+++|.+...  ++.   .++.++++..++..++|.+|||+|+|||+       
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            566899999999999999999999999998854322  221   12344667777889999999999999999       


Q ss_pred             --ccchhhhHhHHHHHHHHHHH----H-------HHH-H---HHHHHHHHHHHHhcCCCCcc------------------
Q 022970          157 --LPLLRWKRFAVAAAMCILAV----R-------AVV-V---QLAFYLHMQTHVYRRPAVFS------------------  201 (289)
Q Consensus       157 --lPplRlKr~p~laa~~Il~v----~-------a~i-v---~lg~~l~~~t~~~g~p~~~~------------------  201 (289)
                        +|++|++....+........    .       +.. .   .+..++|  +. .||-..++                  
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y--~~-~KR~t~~~~~~lg~~~~~~~~~G~~a  162 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSY--PY-MKRYTAFANYHLASIQGLAVFSGAVA  162 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--hH-HhcCCcchHHHHHHHHHHHHHHHHHH
Confidence              89999977754422211100    0       000 0   0011122  22 12101100                  


Q ss_pred             --------------hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          202 --------------KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       202 --------------~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                                    ..-+.+....++|+.+++++||+||+|+|++.|+||+|+++| +++.+++..+...+-+..++.+.
T Consensus       163 ~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~  241 (300)
T PRK13106        163 VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDL  241 (300)
T ss_pred             HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence                          011222334567889999999999999999999999999999 88999888877777777777666


Q ss_pred             hCc
Q 022970          268 TSP  270 (289)
Q Consensus       268 ~~~  270 (289)
                      ...
T Consensus       242 ~~~  244 (300)
T PRK13106        242 YYG  244 (300)
T ss_pred             HhC
Confidence            543

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.86  E-value=3.4e-20  Score=171.55  Aligned_cols=160  Identities=23%  Similarity=0.293  Sum_probs=102.4

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------ccch
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------LPLL  160 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------lPpl  160 (289)
                      +++|+|++|||++....++++.|++++.+..+++  .   .++..+++..++..++|.+|||+|+|+|+       +|++
T Consensus         3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG   77 (277)
T PRK12883          3 LKAFIEITRPHNCILAGIVGILGSLVALGGIPPI--K---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG   77 (277)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence            6789999999999999999999999875432211  1   12223445555667899999999999998       8888


Q ss_pred             hhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcC-CCCcchHHH-------------------
Q 022970          161 RWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR-PAVFSKPLI-------------------  205 (289)
Q Consensus       161 RlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~-p~~~~~~V~-------------------  205 (289)
                      |+++...+....++...+.++               .+..+.|  +..+++ +..++..+.                   
T Consensus        78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y--~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~  155 (277)
T PRK12883         78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLY--AWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGL  155 (277)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCcchhhHHHHHHHHHHHHHHHHHhccccH
Confidence            887665433222221111111               0011112  211121 211111110                   


Q ss_pred             --HHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHH
Q 022970          206 --FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISL  254 (289)
Q Consensus       206 --~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~l  254 (289)
                        ++..+.+++.+++++.||++|+||||+.|++|+|+++|+|++.+++...
T Consensus       156 ~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        156 AGYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence              1112244456789999999999999999999999999999999876554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.86  E-value=8.3e-20  Score=169.97  Aligned_cols=180  Identities=17%  Similarity=0.148  Sum_probs=119.7

Q ss_pred             hhHHHHHHHHhhhccchhHH---HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---
Q 022970           83 SVINALDAFYRFSRPHTVIG---TALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---  156 (289)
Q Consensus        83 ~~~~~l~a~~~l~RPht~ig---t~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---  156 (289)
                      .++.++++|+|++|||+..+   +.++++.|+++|.... ..++   ..++..+++++++..++|.+|||+|+|+|+   
T Consensus         2 ~~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~---~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~   77 (285)
T PRK12847          2 DILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDI---SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVA   77 (285)
T ss_pred             chHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcH---HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence            45678999999999998876   5578888888875422 1232   223455677778899999999999999997   


Q ss_pred             ------ccchhhhHhHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHhcCCCCc-----------------
Q 022970          157 ------LPLLRWKRFAVAAAMCILAVRAVVV------------QLAFY-LHMQTHVYRRPAVF-----------------  200 (289)
Q Consensus       157 ------lPplRlKr~p~laa~~Il~v~a~iv------------~lg~~-l~~~t~~~g~p~~~-----------------  200 (289)
                            +|++|++....+....++...+.++            .++.. ...++. .++...+                 
T Consensus        78 Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~-~Kr~~~~~~~~~g~~~~~~~l~~~  156 (285)
T PRK12847         78 RTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPL-MKRFFYWPQLFLGFTFNMGILMAF  156 (285)
T ss_pred             cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-cccCCcccHHHHHHHHHHHHHHHH
Confidence                  8889987665433222221111110            00110 111121 2221111                 


Q ss_pred             -------chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          201 -------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       201 -------~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                             +...+++....++++.+.+++++++|+|+|++.|++|+|+++|+|++.+++.......|++.++.-.
T Consensus       157 ~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~  230 (285)
T PRK12847        157 AAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGII  230 (285)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence                   1122233344566788899999999999999999999999999999999988888777776655433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.85  E-value=1.1e-19  Score=170.67  Aligned_cols=182  Identities=16%  Similarity=0.126  Sum_probs=118.9

Q ss_pred             hhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcc---cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--
Q 022970           82 NSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEK---VSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--  156 (289)
Q Consensus        82 ~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~---~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--  156 (289)
                      ++.++++++|+|++||++.+++...++.|.++|.+.   ...+++.   .++.+++++.++..+++.+|||+|+|||+  
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            356778999999999999999999999999988521   1123322   23445666677788899999999999999  


Q ss_pred             -------ccchhhhHhHHHHHHHHHHHHHHH-----------HHH--HHHHHHHHHHhcCCCC-----------------
Q 022970          157 -------LPLLRWKRFAVAAAMCILAVRAVV-----------VQL--AFYLHMQTHVYRRPAV-----------------  199 (289)
Q Consensus       157 -------lPplRlKr~p~laa~~Il~v~a~i-----------v~l--g~~l~~~t~~~g~p~~-----------------  199 (289)
                             +|++|++....+.....+.+.+++           +.+  ..+...++. .||-..                 
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~-~KR~t~~~~~~~g~~~~~~~l~G  157 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSY-FKRFSSLAHLVLGLSLGLAPIAG  157 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-hcccccccHHHHHHHHHHHHHHH
Confidence                   899999777543322222111100           000  111111222 222111                 


Q ss_pred             -------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          200 -------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       200 -------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                             .+...+++....++|+.+.+++++++|+|+||+.|++|+|+++|++++.+++.....+..+..++.+.
T Consensus       158 ~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~  232 (291)
T PRK12874        158 VVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVW  232 (291)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence                   11112233345567888999999999999999999999999999999988765544444444444333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.85  E-value=4.3e-20  Score=170.50  Aligned_cols=178  Identities=18%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc-------c
Q 022970           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDKL-------P  158 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDkl-------P  158 (289)
                      +-+++++|+.|+.|.+.+..++..++....  ..++.+     ....+++..+...++|.+|||+|+|+|+.       |
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            457899999999999998888777653211  111111     12335556667788999999999999992       2


Q ss_pred             chhhhHhHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---HHhcCCCC--------------------
Q 022970          159 LLRWKRFAVAAAMCILAVRAVVV----------------QLAFYLHMQT---HVYRRPAV--------------------  199 (289)
Q Consensus       159 plRlKr~p~laa~~Il~v~a~iv----------------~lg~~l~~~t---~~~g~p~~--------------------  199 (289)
                      +.|..+...+...++....++.+                .+..++|...   ..+..|..                    
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~  154 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYY  154 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHh
Confidence            22222221111111111110000                0111122210   11111211                    


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970          200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (289)
Q Consensus       200 ----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~  270 (289)
                          ++...+....+.++..++++++||+||+||||+.|++|+|+++|+|++.+++..+..++|++.+.......
T Consensus       155 ~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~  229 (285)
T PRK12872        155 YQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL  229 (285)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                11222233445556678899999999999999999999999999999999999999999998887766544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.85  E-value=6e-20  Score=174.39  Aligned_cols=178  Identities=17%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-----------  156 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-----------  156 (289)
                      ++.|+|.+||+|...+..+++.|+.+|......+++.   .++.+++++++.++..|.+|||||+|.|+           
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            5779999999999999999999999986433456643   33556777788899999999999998544           


Q ss_pred             ccchhhhHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHh-cCCCC------cchH-------HHH---
Q 022970          157 LPLLRWKRFAVAAAMCILAVRAVV-------------VQLAFYLHMQTHVY-RRPAV------FSKP-------LIF---  206 (289)
Q Consensus       157 lPplRlKr~p~laa~~Il~v~a~i-------------v~lg~~l~~~t~~~-g~p~~------~~~~-------V~~---  206 (289)
                      ++...+++........++...+.+             +.+|.....--..+ ++|..      +...       +++   
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~  159 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLA  159 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence            333444333222111111111100             01111100000001 11111      0000       000   


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHH
Q 022970          207 ----------------------------------ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI  252 (289)
Q Consensus       207 ----------------------------------lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~  252 (289)
                                                        ...-..+.+..+++.||++|+|+||+.|+||+|+++|+|++.++-.
T Consensus       160 ~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~  239 (317)
T PRK13387        160 VYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFA  239 (317)
T ss_pred             HHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHH
Confidence                                              1111112344678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 022970          253 SLLEVAYTVAILVGAT  268 (289)
Q Consensus       253 ~ll~~ay~~~i~~~~~  268 (289)
                      +++.++|+..+...+.
T Consensus       240 ~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        240 ILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999976655544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.85  E-value=6.7e-20  Score=173.45  Aligned_cols=178  Identities=17%  Similarity=0.155  Sum_probs=117.7

Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccccc---c
Q 022970           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKLP---L  159 (289)
Q Consensus        85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDklP---p  159 (289)
                      +++++.|++-+||+|...+..+++.|..+|.....++++.   .++.+++++++.++..|.+|||||++  +|+-+   +
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   85 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSV   85 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence            4568899999999999999999999999986533466643   33456788899999999999999998  78721   1


Q ss_pred             hh----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHh-cCCCC--------------------
Q 022970          160 LR----WKRFAVAAAMCILAVRAVVVQLAFYLHMQT---------------HVY-RRPAV--------------------  199 (289)
Q Consensus       160 lR----lKr~p~laa~~Il~v~a~iv~lg~~l~~~t---------------~~~-g~p~~--------------------  199 (289)
                      .|    -|+...++..|.+    +....|+++...+               ..+ ++|..                    
T Consensus        86 ~~~~~~~~~v~~~~~~~~~----~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v  161 (304)
T PRK07419         86 VNLTGNKSLVFWLANLFLL----LGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAV  161 (304)
T ss_pred             ccccCcHHHHHHHHHHHHH----HHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHH
Confidence            11    1222122211111    1111111111100               001 11211                    


Q ss_pred             ----------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970          200 ----------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (289)
Q Consensus       200 ----------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~  269 (289)
                                ++...+.......+.+..+...||++|+|.||+.|+||+|+++|+|++.++..+++..+|++.+...+..
T Consensus       162 ~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g  241 (304)
T PRK07419        162 AAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLG  241 (304)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      1111111222223445678899999999999999999999999999999999999999999887766654

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.85  E-value=1.5e-19  Score=169.36  Aligned_cols=177  Identities=16%  Similarity=0.069  Sum_probs=114.6

Q ss_pred             hHHHHHHHHhhhccchhHHHH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 022970           84 VINALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~---l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk----  156 (289)
                      ..+++++|+|++||++..++.   ++++.|+++|.+..  .++.   .++..+++.+++.+++|.+|||+|+|+|+    
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            345789999999999998888   58888888874432  2221   22344566667788999999999999997    


Q ss_pred             -----ccchhhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcC---CC---------------
Q 022970          157 -----LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR---PA---------------  198 (289)
Q Consensus       157 -----lPplRlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~---p~---------------  198 (289)
                           +|++|++....+.....+...++++               .+..++|  +..++.   |.               
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~lg~~~~~~~l~g~  157 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLY--PLAKRVFPVPQLVLAIAWGFAVLISW  157 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--hhhhhccccceeeehHHHHhHHHHHH
Confidence                 8999998775433322221111100               0011122  111110   00               


Q ss_pred             -----CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970          199 -----VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (289)
Q Consensus       199 -----~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~  268 (289)
                           ..+...+++....++|+.+.+++++++|+|+|++.|++|+|+++|++++.+++........+ ...++..
T Consensus       158 ~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~-l~~~~~~  231 (290)
T PRK12870        158 SAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGF-LAILGVL  231 (290)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHH-HHHHHHH
Confidence                 01222334445666788999999999999999999999999999999999887643333333 3344443

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=1.5e-19  Score=169.61  Aligned_cols=180  Identities=17%  Similarity=0.184  Sum_probs=111.6

Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc-------
Q 022970           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK-------  156 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk-------  156 (289)
                      ++++.|++.+||+|...+..+++.|..+|.....++++.   .++.++++++++++..|.+|||+|+|  +|+       
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            368899999999999999999999999886433456643   33556778888999999999999955  554       


Q ss_pred             ---ccchhhhHhHHHHHHHHHHHHH------H-------HHHHHHHHHHHHHHh-cCCCCc------c-------hHHHH
Q 022970          157 ---LPLLRWKRFAVAAAMCILAVRA------V-------VVQLAFYLHMQTHVY-RRPAVF------S-------KPLIF  206 (289)
Q Consensus       157 ---lPplRlKr~p~laa~~Il~v~a------~-------iv~lg~~l~~~t~~~-g~p~~~------~-------~~V~~  206 (289)
                         +|.+++++........++...+      +       .+.++.....-...+ ++|...      .       .++++
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~v  158 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLV  158 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHH
Confidence               4445554443222111110000      0       001111000000001 112111      0       01111


Q ss_pred             HHH-----------------HHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970          207 ATA-----------------FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (289)
Q Consensus       207 lt~-----------------f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~  269 (289)
                      +..                 -..+++..+...||++|+|+||+.|+||+|+++|+|++ ++-..++..+|+..++..+..
T Consensus       159 lg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g  237 (296)
T PRK05951        159 MGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAI  237 (296)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHh
Confidence            111                 11223455779999999999999999999999999999 665567788888777666654

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.83  E-value=4.1e-19  Score=166.88  Aligned_cols=178  Identities=15%  Similarity=0.168  Sum_probs=118.9

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------cc
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LP  158 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lP  158 (289)
                      ++.|+|++||+..+.+...++.|+++|.+..  .++..   ++..+++..++-.+++++|||+|+||||         +|
T Consensus         3 ~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLp   77 (286)
T PRK12895          3 FRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALV   77 (286)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCC
Confidence            7899999999999999999999999985421  22211   1223445567788999999999999999         99


Q ss_pred             chhhhHhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhcC--------------------------CCCc
Q 022970          159 LLRWKRFAVAAAMCILAVRAVVV------------QLAFYLHMQTHVYRR--------------------------PAVF  200 (289)
Q Consensus       159 plRlKr~p~laa~~Il~v~a~iv------------~lg~~l~~~t~~~g~--------------------------p~~~  200 (289)
                      ++|+++...+.....+...++.+            ....++....-..||                          ...+
T Consensus        78 sG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~~  157 (286)
T PRK12895         78 SGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFPY  157 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCCc
Confidence            99998775443322221111110            011111111100111                          1111


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970          201 SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (289)
Q Consensus       201 ~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~  270 (289)
                      ....+++....++|+.+.++++|+||+|+||+.|++|+|+++|++++.+++..+..++.+..++.|....
T Consensus       158 ~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~  227 (286)
T PRK12895        158 NLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR  227 (286)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1122344556677899999999999999999999999999999999998887666666666666665443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.82  E-value=2e-18  Score=162.04  Aligned_cols=179  Identities=16%  Similarity=0.209  Sum_probs=117.7

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      ..++++.|+|++||++.++...+++.|+++|.+..++  +.   .++.++++..++.+++|.+|||+|+|+|+       
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            4577899999999999999999999999988442222  21   12334556667778899999999999999       


Q ss_pred             --ccchhhhHhHHHHHHHHHHHHH-----------HHHH-HHHH-HHHHHHHhcCCCCc---------------------
Q 022970          157 --LPLLRWKRFAVAAAMCILAVRA-----------VVVQ-LAFY-LHMQTHVYRRPAVF---------------------  200 (289)
Q Consensus       157 --lPplRlKr~p~laa~~Il~v~a-----------~iv~-lg~~-l~~~t~~~g~p~~~---------------------  200 (289)
                        +|++|++....+..........           ..+. ++.. ...++. .|+-..+                     
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-~Kr~t~~~~~~~g~~~~~~~l~g~~a~~  157 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSY-CKRFTALAHVVLGFCLALAPLGAWIAIR  157 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccccccHHHHHHHHHHHHHHHHHHHc
Confidence              8899997765332211110000           0000 0010 111122 1221111                     


Q ss_pred             ---chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970          201 ---SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (289)
Q Consensus       201 ---~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~  268 (289)
                         +...+++....++|+.+.+++++++|.|+||+.|++|+|+++|++++.+++.......+...++.+..
T Consensus       158 g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~  228 (291)
T PRK12886        158 GTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGIS  228 (291)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence               11122223334566778999999999999999999999999999999998877767777666665554

>PLN02922 prenyltransferase

Probab=99.82  E-value=1.1e-18  Score=165.72  Aligned_cols=182  Identities=15%  Similarity=0.180  Sum_probs=115.8

Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---ccch
Q 022970           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---LPLL  160 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk---lPpl  160 (289)
                      ++++.|++-+||+|...+..+++.|..+|......+++.   .++.+++++++.++..|.+|||||++  +|+   -.+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            458889999999999999999999999986533456643   33556888999999999999999988  665   1111


Q ss_pred             hh--hHhHH--HHHHHHH----HHHHH--------HHHHHHHHHHHHHHh-cCCCC------------------------
Q 022970          161 RW--KRFAV--AAAMCIL----AVRAV--------VVQLAFYLHMQTHVY-RRPAV------------------------  199 (289)
Q Consensus       161 Rl--Kr~p~--laa~~Il----~v~a~--------iv~lg~~l~~~t~~~-g~p~~------------------------  199 (289)
                      |.  ++...  .+..|.+    ....+        ++.+|......-..+ ++|..                        
T Consensus        90 ~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y  169 (315)
T PLN02922         90 NLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFY  169 (315)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHH
Confidence            11  11111  1111100    00000        111111100000001 11111                        


Q ss_pred             ----------------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHH
Q 022970          200 ----------------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAI  263 (289)
Q Consensus       200 ----------------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i  263 (289)
                                      ++..++.+..-..+.+.++...||++|+|.||+.|+||+|+++|+|++.++-.+++..+|++.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i  249 (315)
T PLN02922        170 LALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLA  249 (315)
T ss_pred             HHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHH
Confidence                            0111112222223345578899999999999999999999999999999999999999999888


Q ss_pred             HHHHhCc
Q 022970          264 LVGATSP  270 (289)
Q Consensus       264 ~~~~~~~  270 (289)
                      ...+...
T Consensus       250 ~~v~~~~  256 (315)
T PLN02922        250 ALGLLKA  256 (315)
T ss_pred             HHHHHhh
Confidence            7776643

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.82  E-value=1.8e-18  Score=162.02  Aligned_cols=177  Identities=16%  Similarity=0.172  Sum_probs=119.0

Q ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHhhcc-cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 022970           88 LDAFYRFSRPHTVIGTALSIVSVALLAVEK-VSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (289)
Q Consensus        88 l~a~~~l~RPht~igt~l~vl~g~llA~~~-~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------l  157 (289)
                      ++.|+|++||++.+.+...++.+++++... ...+++.   .++..+++.+++..++|.+|||+|+|+|+         +
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            689999999999999999888888877421 1223322   22345667778899999999999999999         8


Q ss_pred             cchhhhHhHHHHHHHHHHHHH-----------H-HHHH---HHHHHHHHHHhcCCC------------------------
Q 022970          158 PLLRWKRFAVAAAMCILAVRA-----------V-VVQL---AFYLHMQTHVYRRPA------------------------  198 (289)
Q Consensus       158 PplRlKr~p~laa~~Il~v~a-----------~-iv~l---g~~l~~~t~~~g~p~------------------------  198 (289)
                      |++|++....+.........+           . ...+   ..+.|.  . .|+..                        
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~--~-~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g  155 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYP--Y-AKRFTNFPHAILGLAQAVGPVGAWIAVTG  155 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--H-hhcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence            999997765333222111100           0 0011   111221  1 11111                        


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970          199 VFSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (289)
Q Consensus       199 ~~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~  270 (289)
                      ..+...+++....++++.+.+++++++|+|+||+.|+||+|+++|+|++.+++..+..+.++..++.+....
T Consensus       156 ~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~  227 (284)
T PRK12888        156 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG  227 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            112222334445567888999999999999999999999999999999998877777777776666666543

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.81  E-value=1.2e-18  Score=163.29  Aligned_cols=176  Identities=18%  Similarity=0.172  Sum_probs=111.1

Q ss_pred             HHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--cccc---cchhh---
Q 022970           91 FYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDKL---PLLRW---  162 (289)
Q Consensus        91 ~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDkl---PplRl---  162 (289)
                      |++-+||++...+..+++.|..+|......+++..   ++.+++++++.++..|.+|||||++  .|+-   .+.|.   
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~   78 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS   78 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence            56889999999999999999999865334566443   3456778889999999999999987  5761   22111   


Q ss_pred             -hHhHHHHHHHHH--HH--------HH-HHHHHHHHHHHHHHHh-cCCCC------------------------------
Q 022970          163 -KRFAVAAAMCIL--AV--------RA-VVVQLAFYLHMQTHVY-RRPAV------------------------------  199 (289)
Q Consensus       163 -Kr~p~laa~~Il--~v--------~a-~iv~lg~~l~~~t~~~-g~p~~------------------------------  199 (289)
                       |+....+..+.+  .+        ++ .++.+|.........+ ++|..                              
T Consensus        79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~  158 (285)
T TIGR02235        79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS  158 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Confidence             111111111110  00        00 0011111100000001 11111                              


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970          200 FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (289)
Q Consensus       200 ~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~  269 (289)
                      ++...+....-..+.+.++...||++|+|.||+.|.||+|+++|+|++.++-..++..+|++.+...+..
T Consensus       159 ~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  228 (285)
T TIGR02235       159 FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG  228 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111222222333455678899999999999999999999999999999999999999999877665544

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.81  E-value=9.1e-18  Score=159.32  Aligned_cols=175  Identities=16%  Similarity=0.098  Sum_probs=116.3

Q ss_pred             hhhHHHHHHHHhhh---ccchhHHHHHHHHHHHHHhhcccC---CCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 022970           82 NSVINALDAFYRFS---RPHTVIGTALSIVSVALLAVEKVS---DISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEID  155 (289)
Q Consensus        82 ~~~~~~l~a~~~l~---RPht~igt~l~vl~g~llA~~~~~---~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EID  155 (289)
                      ..+.++++.|+|++   ||++.....++++.|+++|.+...   ..++.   .++..+++.+++.+++|.+|||+|+|+|
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD  100 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID  100 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33667899999999   999999999999999999854211   23321   2345577888889999999999999999


Q ss_pred             c---------ccchhhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhcC---C-------CC--
Q 022970          156 K---------LPLLRWKRFAVAAAMCILAVRAVVV---------------QLAFYLHMQTHVYRR---P-------AV--  199 (289)
Q Consensus       156 k---------lPplRlKr~p~laa~~Il~v~a~iv---------------~lg~~l~~~t~~~g~---p-------~~--  199 (289)
                      +         +|.+|++....+....++.+.++.+               .+..+.|  +..+..   |       ..  
T Consensus       101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y--~~~KR~t~~~~~~~Gl~~~~~  178 (314)
T PRK12878        101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAY--PFMKRITWWPQFFLGLAFSWG  178 (314)
T ss_pred             cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhcCCcchHHHHHHHHHH
Confidence            7         8899987775443332222111111               1111122  221110   1       00  


Q ss_pred             -----------cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970          200 -----------FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV  261 (289)
Q Consensus       200 -----------~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~  261 (289)
                                 .+...+.+....++++.+.+.+++++|+|+||+.|++|+|+++|++++.++......+..+.
T Consensus       179 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~  251 (314)
T PRK12878        179 ALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM  251 (314)
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH
Confidence                       11111222334556778889999999999999999999999999999998875555444433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.79  E-value=7.9e-18  Score=158.15  Aligned_cols=179  Identities=17%  Similarity=0.127  Sum_probs=112.0

Q ss_pred             HHHHHHHhhhccchhHHHHHHHH---HHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970           86 NALDAFYRFSRPHTVIGTALSIV---SVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~vl---~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------  156 (289)
                      ++++.|+|++|.++..|+.+-.+   .+..++.......++.   .++..+++..++.++++++||++|+||||      
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~   80 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERTK   80 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence            57899999999999998877662   3333332111112221   22345666677889999999999999997      


Q ss_pred             ---ccchhhhHhHHHHHHHHHHHHHHHH------------HHHH-HHHHHHHHhcCCCC---------------------
Q 022970          157 ---LPLLRWKRFAVAAAMCILAVRAVVV------------QLAF-YLHMQTHVYRRPAV---------------------  199 (289)
Q Consensus       157 ---lPplRlKr~p~laa~~Il~v~a~iv------------~lg~-~l~~~t~~~g~p~~---------------------  199 (289)
                         +|++|++....+....++...++.+            ..+. +.+.++. .||-..                     
T Consensus        81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~-~KR~t~~~~~~lg~~~~~~~l~g~~av  159 (289)
T PLN02809         81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPL-MKRFTFWPQAFLGLTFNWGALLGWAAV  159 (289)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH-HHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence               8899997775443222221111100            0011 1112222 222111                     


Q ss_pred             ---cchH-HHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970          200 ---FSKP-LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (289)
Q Consensus       200 ---~~~~-V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~  269 (289)
                         .+.. +..+.....+|+.+.+++.+++|+|+||+.|++|+|+++|++...+++. +...+|+..+++|...
T Consensus       160 ~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~  232 (289)
T PLN02809        160 KGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA  232 (289)
T ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence               1111 1113334445677889999999999999999999999999998888774 6666777777777644

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.79  E-value=1.8e-17  Score=154.33  Aligned_cols=174  Identities=16%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             HHHHHHHhhhccchhHHHH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970           86 NALDAFYRFSRPHTVIGTA---LSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~---l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------  156 (289)
                      +++++|+|++|||+..++.   ++++.|+++|.+...  ++.   .++.++++.+++.+++|.+|||+|+|+|+      
T Consensus         3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   77 (282)
T PRK12848          3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK   77 (282)
T ss_pred             hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence            3689999999977766555   557778877743222  221   22334556667788999999999999997      


Q ss_pred             ---ccchhhhHhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhcCCCC-------------------
Q 022970          157 ---LPLLRWKRFAVAAAMCILAVRAVV---------------VQLAFYLHMQTHVYRRPAV-------------------  199 (289)
Q Consensus       157 ---lPplRlKr~p~laa~~Il~v~a~i---------------v~lg~~l~~~t~~~g~p~~-------------------  199 (289)
                         +|++|++....+....++...+++               ..+..++|  +..++....                   
T Consensus        78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y--~~~Kr~~~~~~~~~g~~~g~~~~~g~~a  155 (282)
T PRK12848         78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIY--PFMKRYTHLPQVVLGAAFGWGIPMAFAA  155 (282)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HhHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence               899999777543322222111110               01111223  221211100                   


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       200 ----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                          .+...+++....++++.+.....+++|+|+||+.|++|+|+++|+|++.+++...... .....+++.
T Consensus       156 ~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~-~~~~~~~~~  226 (282)
T PRK12848        156 VQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLAT-LALLAWAGW  226 (282)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHH-HHHHHHHHH
Confidence                1111112222334456677788889999999999999999999999988877444333 333333443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.79  E-value=8.7e-18  Score=157.64  Aligned_cols=175  Identities=15%  Similarity=0.083  Sum_probs=108.7

Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 022970           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------  156 (289)
Q Consensus        85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--------  156 (289)
                      ..++++|+|++||++++...++++.|+++|.+.  .+++.   .++.++++..++.+++|.+|||||+|+|+        
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            356999999999999999999999999998532  23332   22345667777889999999999999999        


Q ss_pred             -ccchhhhHhHHHHHHHHHHH------------HHHHH-HHHH--HHHHHHHHhcCCCCcch------------------
Q 022970          157 -LPLLRWKRFAVAAAMCILAV------------RAVVV-QLAF--YLHMQTHVYRRPAVFSK------------------  202 (289)
Q Consensus       157 -lPplRlKr~p~laa~~Il~v------------~a~iv-~lg~--~l~~~t~~~g~p~~~~~------------------  202 (289)
                       +|++|+++...+.....+..            .+..+ .+++  +...++..+|+...++.                  
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~  161 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAV  161 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHh
Confidence             88999977753322211111            11111 1111  22222321232112211                  


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHH
Q 022970          203 ------PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAIL  264 (289)
Q Consensus       203 ------~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~  264 (289)
                            ..+++....+++.........++|.|.||+.|+||+|+++|++++.+++.....+.-...++
T Consensus       162 ~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~  229 (296)
T PRK04375        162 TGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLL  229 (296)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHH
Confidence                  11122333444555555555567777789999999999999999888665544444333333

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.78  E-value=8.5e-18  Score=156.52  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=107.5

Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------c
Q 022970           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------L  157 (289)
Q Consensus        87 ~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------l  157 (289)
                      ++++|+|++||++.....++++.|+++|.+.  ..++.   .++.++++..++.+++|.+|||+|+|+|+         +
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            3689999999999999999999999988432  23322   12344666677789999999999999999         8


Q ss_pred             cchhhhHhHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHHhcCCCCcch--------------------
Q 022970          158 PLLRWKRFAVAAAMCILAVR-------------AVVVQLA--FYLHMQTHVYRRPAVFSK--------------------  202 (289)
Q Consensus       158 PplRlKr~p~laa~~Il~v~-------------a~iv~lg--~~l~~~t~~~g~p~~~~~--------------------  202 (289)
                      |++|++....+.....+...             +....++  .+.+.++...|+-..++.                    
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g  155 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTG  155 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89999776533222111010             1111111  122223321233111111                    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHH
Q 022970          203 ----PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYT  260 (289)
Q Consensus       203 ----~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~  260 (289)
                          ..+++...++++..+.....+.+|.|.|++.|++|+|+++|+|++.++......+.-+
T Consensus       156 ~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  217 (279)
T PRK12869        156 SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP  217 (279)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence                1122223334455566656688899999999999999999999998876555444333

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.78  E-value=1.3e-17  Score=156.37  Aligned_cols=169  Identities=21%  Similarity=0.184  Sum_probs=105.5

Q ss_pred             ccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc---------ccchhhhH
Q 022970           96 RPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK---------LPLLRWKR  164 (289)
Q Consensus        96 RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk---------lPplRlKr  164 (289)
                      ||+|...+..+++.|..+|.... .+++.   .++.++++++++++..|.+|||||.+  +|+         ++.+.++.
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            99999999999999999985432 56643   33556788889999999999999995  353         33333322


Q ss_pred             hHHHHHHHHH----HHHHH---------------HHHHHHHHHHHHHHh-cCCCC--cc----h-------HHHH-----
Q 022970          165 FAVAAAMCIL----AVRAV---------------VVQLAFYLHMQTHVY-RRPAV--FS----K-------PLIF-----  206 (289)
Q Consensus       165 ~p~laa~~Il----~v~a~---------------iv~lg~~l~~~t~~~-g~p~~--~~----~-------~V~~-----  206 (289)
                      ........++    .+.++               .+.+|.....--..+ ++|..  ..    .       ++++     
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y  156 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence            2211111110    00111               111111100000001 11111  10    0       1111     


Q ss_pred             ------------HHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHh
Q 022970          207 ------------ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGAT  268 (289)
Q Consensus       207 ------------lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~  268 (289)
                                  ...-..+.+.++...|+++|+|+|++.|.||+|+++|+|++.++-.+++..+|+..++....
T Consensus       157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~  230 (284)
T TIGR00751       157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA  230 (284)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                        11112344567889999999999999999999999999999999999999999887766554

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.78  E-value=1.1e-17  Score=158.20  Aligned_cols=181  Identities=23%  Similarity=0.271  Sum_probs=120.1

Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc--------
Q 022970           87 ALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK--------  156 (289)
Q Consensus        87 ~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk--------  156 (289)
                      +.+.|||..||||+..+..+++.|..+|......++   ++..+.++++++++++..|..|||+|.+  .|.        
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~---~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFN---LLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            468999999999999999999999999965333344   4566778999999999999999999997  773        


Q ss_pred             ---ccchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------h-cCCCC--cch-----------HH
Q 022970          157 ---LPLLRWKRFAVAAAMCILAVRAVVVQLAFYLHMQTHV---------------Y-RRPAV--FSK-----------PL  204 (289)
Q Consensus       157 ---lPplRlKr~p~laa~~Il~v~a~iv~lg~~l~~~t~~---------------~-g~p~~--~~~-----------~V  204 (289)
                         +-+-+.|+.-. ..+++. ..+..+.+|++++..+.+               + |+|..  ..+           ++
T Consensus        84 ~g~I~~~~~k~~~~-l~l~l~-~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l  161 (303)
T COG1575          84 SGLIVRQSMKPALI-LSLALF-LLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPL  161 (303)
T ss_pred             cceeecccCCHHHH-HHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHH
Confidence               33333333311 111111 122222223333322111               0 23332  111           11


Q ss_pred             HHHHH-----------------HHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          205 IFATA-----------------FMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       205 ~~lt~-----------------f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                      +++..                 -..+.+..+...|+++|+|-|++.|.+|+|+++|++++..+-..++..+|+..++.-+
T Consensus       162 ~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i  241 (303)
T COG1575         162 IVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVI  241 (303)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHH
Confidence            11111                 1112234577999999999999999999999999999999999999999999887655


Q ss_pred             hCchh
Q 022970          268 TSPFA  272 (289)
Q Consensus       268 ~~~~~  272 (289)
                      .....
T Consensus       242 ~~~~~  246 (303)
T COG1575         242 LGLFP  246 (303)
T ss_pred             HHhch
Confidence            44433

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.77  E-value=1.7e-17  Score=156.53  Aligned_cols=172  Identities=19%  Similarity=0.222  Sum_probs=104.7

Q ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------
Q 022970           86 NALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------  156 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------  156 (289)
                      .+++.|+|++||++......+++.|..+|......+++..  .++.++.++++++ .+|.+|||+|+|+|+         
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~--~~l~~l~~~l~~~-ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL--TIKAALIGLFGFE-AGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH--HHHHHHHHHHHHH-HHHHHhhHHHHhcCcchHhhhhhc
Confidence            4588999999999999888888889888732112334322  2223344445554 467999999999985         


Q ss_pred             ---------ccchhhhHhHHHHHHHHHHHHH-------------HHHHHHHHHHH----HHHHhcC----CCC---c---
Q 022970          157 ---------LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLHM----QTHVYRR----PAV---F---  200 (289)
Q Consensus       157 ---------lPplRlKr~p~laa~~Il~v~a-------------~iv~lg~~l~~----~t~~~g~----p~~---~---  200 (289)
                               +|+++++....+....++...+             ..+.++++.+.    ++. +++    |..   +   
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~-~kr~~~~p~~~l~G~~~  158 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV-KKRNQKYPVAQLLGRTD  158 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHH
Confidence                     3556665554332222111111             11122222221    111 232    211   1   


Q ss_pred             ---------------chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970          201 ---------------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV  261 (289)
Q Consensus       201 ---------------~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~  261 (289)
                                     +...+.+..+.++++.+++++||++|+|||++.|+||+|+++|++++.++...+..+..+.
T Consensus       159 ~~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~  234 (297)
T PRK12871        159 FTLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLA  234 (297)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHH
Confidence                           0111223345566788999999999999999999999999999999987655555554443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.76  E-value=2.5e-17  Score=155.60  Aligned_cols=125  Identities=19%  Similarity=0.199  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhhhhhhhhhccc-------ccchhhhHhHHHHHHHHHHHHHHHHH----------HHHHHHH----HHHHh
Q 022970          136 ALMMNIYIVGLNQLSDIEIDK-------LPLLRWKRFAVAAAMCILAVRAVVVQ----------LAFYLHM----QTHVY  194 (289)
Q Consensus       136 ~l~~n~~~ngiNDyfD~EIDk-------lPplRlKr~p~laa~~Il~v~a~iv~----------lg~~l~~----~t~~~  194 (289)
                      .++..+.+|.+|||||+||||       +|++|.++..+......+.+.++.++          +..++|.    .+..+
T Consensus        55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a~~~K  134 (299)
T PRK13592         55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSFWFFK  134 (299)
T ss_pred             HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334456888999999999999       99999988865443333222222211          1222330    12223


Q ss_pred             cCCCCcchHH---------------------------------HHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhh
Q 022970          195 RRPAVFSKPL---------------------------------IFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVR  241 (289)
Q Consensus       195 g~p~~~~~~V---------------------------------~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~  241 (289)
                      +.+...|..|                                 +++....++.+++||+.||+|| |||++. .+|+|++
T Consensus       135 ~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~  212 (299)
T PRK13592        135 RDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKL  212 (299)
T ss_pred             ccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC-Ceeechh
Confidence            3333322222                                 2333455566789999999999 899975 9999999


Q ss_pred             hChHHHHHHHHHHHHHHHHHH
Q 022970          242 LGQKRVFWTCISLLEVAYTVA  262 (289)
Q Consensus       242 lG~k~a~~l~~~ll~~ay~~~  262 (289)
                      +|+|++.+++..+..++.+..
T Consensus       213 ~G~kkA~~ia~~l~ii~v~~s  233 (299)
T PRK13592        213 FGYKKATRFIEVVTLLDILTN  233 (299)
T ss_pred             ccchhHHHHHHHHHHHHHHHh
Confidence            999999999988877766543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.76  E-value=6.3e-17  Score=153.19  Aligned_cols=164  Identities=16%  Similarity=0.225  Sum_probs=109.6

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      .+.+++.|+|++||+++....++++.|+++|.+  .+.++..   ++.++++..++.+++|.+|||+|+|+|+       
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASK--GHVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            345689999999999999999999999998833  2334321   2334455556678999999999999997       


Q ss_pred             --ccchhhhHhHHHHHHHHHHHH-------------HHHHHHHH--HHHHHHHHhcCCCC--------------------
Q 022970          157 --LPLLRWKRFAVAAAMCILAVR-------------AVVVQLAF--YLHMQTHVYRRPAV--------------------  199 (289)
Q Consensus       157 --lPplRlKr~p~laa~~Il~v~-------------a~iv~lg~--~l~~~t~~~g~p~~--------------------  199 (289)
                        +|++|+++...+....++...             +....++.  |...++..+|+-..                    
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a  163 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCA  163 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHH
Confidence              899999777543322211111             11111222  22233422332111                    


Q ss_pred             ----cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHH
Q 022970          200 ----FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCI  252 (289)
Q Consensus       200 ----~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~  252 (289)
                          .+...+++..++++|+.......+++|.|+|++.|++|+|++.|+|++.+.+.
T Consensus       164 ~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        164 VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence                11223334556667778888888999999999999999999999998887543

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.75  E-value=8.6e-17  Score=149.26  Aligned_cols=175  Identities=14%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             HHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------ccc
Q 022970           89 DAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPL  159 (289)
Q Consensus        89 ~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lPp  159 (289)
                      |+|+|++||++++.+.++++.|+++|.+.. +.++.   .++.++++++++.+++|.+|||+|+|+|+         +|+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            368999999999999999999999984421 23322   23445677778899999999999999999         888


Q ss_pred             hhhhHhHHHHHHHHHHHHH-------------HHHHHHH--HHHHHHHHhcCCCCcchH---------------------
Q 022970          160 LRWKRFAVAAAMCILAVRA-------------VVVQLAF--YLHMQTHVYRRPAVFSKP---------------------  203 (289)
Q Consensus       160 lRlKr~p~laa~~Il~v~a-------------~iv~lg~--~l~~~t~~~g~p~~~~~~---------------------  203 (289)
                      +|++.........++...+             .+..++.  +.+.++...|+-..++..                     
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~  156 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSI  156 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8887664332221111111             1111122  122233122321111111                     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHH
Q 022970          204 ---LIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGA  267 (289)
Q Consensus       204 ---V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~  267 (289)
                         .+++....+++...-...-..+|.|.||+.|++|+|+++|+|++.+++............+.+.
T Consensus       157 ~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~  223 (280)
T TIGR01473       157 SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAF  223 (280)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1111112222222222233468999999999999999999999988766555444444444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.74  E-value=2.2e-16  Score=147.24  Aligned_cols=168  Identities=13%  Similarity=0.073  Sum_probs=99.0

Q ss_pred             HHHHhhhccchh---HHHHHHHHHHHHHhhcccCCC-ChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc--------
Q 022970           89 DAFYRFSRPHTV---IGTALSIVSVALLAVEKVSDI-SPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK--------  156 (289)
Q Consensus        89 ~a~~~l~RPht~---igt~l~vl~g~llA~~~~~~~-~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk--------  156 (289)
                      +.|.|++|++..   ....++.+.|+.+|... ... ++.   .++..+++..++.+++|.+|||+|+|+|+        
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   77 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR   77 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence            345666655554   45566777777777431 112 221   12334556667788999999999999997        


Q ss_pred             -ccchhhhHhHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHhcCCCC-----------------------
Q 022970          157 -LPLLRWKRFAVAAAMCILAVRAVVV------------QLAFY-LHMQTHVYRRPAV-----------------------  199 (289)
Q Consensus       157 -lPplRlKr~p~laa~~Il~v~a~iv------------~lg~~-l~~~t~~~g~p~~-----------------------  199 (289)
                       +|++|++....+....++...+++.            ..+.+ ...++. .|+-..                       
T Consensus        78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~-~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g  156 (281)
T TIGR01474        78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF-MKRITYWPQLVLGLAFGWGALMGWAAVTG  156 (281)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhch-hcccccccHHHHHHHHHHHHHHHHHHHcC
Confidence             8899997665433222221111111            00110 111122 222111                       


Q ss_pred             -cchHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHH
Q 022970          200 -FSKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTV  261 (289)
Q Consensus       200 -~~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~  261 (289)
                       .+...+.+....++++.+.+++++++|+|+||+.|+||+|+++|++++.+.........++.
T Consensus       157 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~  219 (281)
T TIGR01474       157 DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL  219 (281)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH
Confidence             11222233445566788999999999999999999999999999998765544444434433

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.74  E-value=8.5e-17  Score=152.70  Aligned_cols=63  Identities=21%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             HHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCchhhHHHHH
Q 022970          216 VVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAWSKLIT  278 (289)
Q Consensus       216 ~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~~~~~~  278 (289)
                      ++++++||++|+||||+.|++|+|+++|++++.++..++..++|++.++..+..--.+...+.
T Consensus       193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~  255 (307)
T PRK13591        193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIIL  255 (307)
T ss_pred             HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence            688899999999999999999999999999999999999999999988777765444444333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.69  E-value=3.1e-15  Score=141.38  Aligned_cols=179  Identities=15%  Similarity=0.070  Sum_probs=110.7

Q ss_pred             HHHHHHHhhhccchhHHHHHH---HHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970           86 NALDAFYRFSRPHTVIGTALS---IVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (289)
Q Consensus        86 ~~l~a~~~l~RPht~igt~l~---vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------  156 (289)
                      ++++.|+|++||+.+.++.+-   .+.|.+++...  ..+.   ..++..++...++.++++.+||+.|+|+|+      
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~--~~~~---~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSA--PPSL---LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCC--CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            358899999999998887654   44455554221  1222   123345566667778999999999999998      


Q ss_pred             ---ccchhhhHhHHHHHHHHHHHHHHHHH----------------H-HHHHHHHHHHh----------cCCCC-------
Q 022970          157 ---LPLLRWKRFAVAAAMCILAVRAVVVQ----------------L-AFYLHMQTHVY----------RRPAV-------  199 (289)
Q Consensus       157 ---lPplRlKr~p~laa~~Il~v~a~iv~----------------l-g~~l~~~t~~~----------g~p~~-------  199 (289)
                         +|++|++....+....++.+.++...                + .++...++..+          |-+..       
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw  159 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPW  159 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHH
Confidence               88999977754433322211111110                0 01111112111          00001       


Q ss_pred             ------cc--hHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 022970          200 ------FS--KPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSP  270 (289)
Q Consensus       200 ------~~--~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~  270 (289)
                            .+  ...+++....++|+.+.+++.+++|.|+|++.|++|+|+++|+ ++..++..+..+..+...++|....
T Consensus       160 ~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~  237 (294)
T PRK12873        160 AAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQ  237 (294)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhC
Confidence                  11  1222233566778899999999999999999999999999997 5666666666666665666666543

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.69  E-value=5e-15  Score=140.33  Aligned_cols=182  Identities=15%  Similarity=0.100  Sum_probs=105.7

Q ss_pred             HHHHHHHhhhcc-chhHHHHHHHHHHHHHhhc---ccCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc----
Q 022970           86 NALDAFYRFSRP-HTVIGTALSIVSVALLAVE---KVSD-ISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK----  156 (289)
Q Consensus        86 ~~l~a~~~l~RP-ht~igt~l~vl~g~llA~~---~~~~-~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk----  156 (289)
                      ++++.|.|+.|- ||+.. .=-+.+|.++|..   .... ++..-+..++...++.+++-.+++++|||+|+|||+    
T Consensus         2 ~~~~~~~~~i~~~ht~Fa-lpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~R   80 (300)
T PRK12876          2 MRIKYFQQLINCKYALFS-ALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPR   80 (300)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCC
Confidence            357888888886 55552 2234556667731   1111 111111122344566667788999999999999999    


Q ss_pred             -----ccchhhhHhHHHHHHHHHHHHH----H--------HHHHHHHH-HHHHHHhcCCCCcc-----------------
Q 022970          157 -----LPLLRWKRFAVAAAMCILAVRA----V--------VVQLAFYL-HMQTHVYRRPAVFS-----------------  201 (289)
Q Consensus       157 -----lPplRlKr~p~laa~~Il~v~a----~--------iv~lg~~l-~~~t~~~g~p~~~~-----------------  201 (289)
                           +|.+|++....+....+....+    .        ...+++.+ ..++. .||-..++                 
T Consensus        81 T~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~-~KR~t~~~~~vLGl~~~~~~l~~~~  159 (300)
T PRK12876         81 TSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPY-TKRVTFLCHWILGLVYYLAILMNFF  159 (300)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence                 8899997775333222111110    0        00111111 11222 22211110                 


Q ss_pred             --------h----HHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 022970          202 --------K----PLIFATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATS  269 (289)
Q Consensus       202 --------~----~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~  269 (289)
                              .    ..++.+...+++..+.+++++.+|+|+||+.|++|+|+++|++++.+++..+..++-+..+++|...
T Consensus       160 Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~  239 (300)
T PRK12876        160 AIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFV  239 (300)
T ss_pred             HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    0    0011122333445589999999999999999999999999999988887766666666555555544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.60  E-value=3e-14  Score=127.32  Aligned_cols=44  Identities=34%  Similarity=0.649  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHH
Q 022970          206 FATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFW  249 (289)
Q Consensus       206 ~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~  249 (289)
                      ....+.+++...+...+|++|+|||++.|++|+|+++|++++..
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  150 LLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            33444466777888888999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK08238 hypothetical protein; Validated

Probab=99.28  E-value=1.5e-10  Score=116.06  Aligned_cols=178  Identities=20%  Similarity=0.135  Sum_probs=102.2

Q ss_pred             hhcccceeeecccCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHH
Q 022970           51 QKIKIKHLANAASGHPLQSNQPDDYKPKSPLNSVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVL  130 (289)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l  130 (289)
                      +..++.++||..++-....  .+...|...+++.+..+++|+|++|||.|++..+.++ +++.+.. ..+  +..+..++
T Consensus       156 ~~A~~av~Vn~~~~l~~~a--~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~  229 (479)
T PRK08238        156 AAARRAIVVGASPGVARAA--RALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAAL  229 (479)
T ss_pred             HhCCCeEEECCCHHHHHHH--HHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHH
Confidence            4555666676544311000  1111234455677788999999999999999998754 7776632 112  22222233


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccc---------ccchhhhHhHHHHHHHHHHHHHHH-----------HHHHHHH--H
Q 022970          131 EAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKRFAVAAAMCILAVRAVV-----------VQLAFYL--H  188 (289)
Q Consensus       131 ~~lva~l~~n~~~ngiNDyfD~EIDk---------lPplRlKr~p~laa~~Il~v~a~i-----------v~lg~~l--~  188 (289)
                      .++++..++..+++.+|||+|+|+||         +|++|++....+....++...+++           +.++.+.  .
T Consensus       230 ~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~  309 (479)
T PRK08238        230 LAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTL  309 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34444445678889999999999999         888998666443322222221111           1111111  1


Q ss_pred             HHHHHhcCCCCc----------------------chHHHHHHHHHHHHHHHHHHHhcCCChhhhHhcCC
Q 022970          189 MQTHVYRRPAVF----------------------SKPLIFATAFMSFFSVVIALFKDVPDLEGDKTFGI  235 (289)
Q Consensus       189 ~~t~~~g~p~~~----------------------~~~V~~lt~f~~~f~~~i~i~KDi~DieGDr~~Gi  235 (289)
                      .++..+|+-..+                      +.+-| +..+..++.+..++.|...|++++++.|-
T Consensus       310 ~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~w-ll~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        310 AYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFW-LLAFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HhhHHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            223323331111                      11112 22345556778999999999999998885

>PLN02776 prenyltransferase

Probab=99.12  E-value=7.5e-09  Score=100.05  Aligned_cols=70  Identities=16%  Similarity=0.057  Sum_probs=51.6

Q ss_pred             hhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc---------ccchhhhH
Q 022970           94 FSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK---------LPLLRWKR  164 (289)
Q Consensus        94 l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk---------lPplRlKr  164 (289)
                      +++|.-.....++++.|+++|.+...  ++.   .++..+++..++.+++|++||++|+|||+         +|.+|+++
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            35777778888899999999854222  221   22344566667788999999999999997         99999977


Q ss_pred             hHHH
Q 022970          165 FAVA  168 (289)
Q Consensus       165 ~p~l  168 (289)
                      ...+
T Consensus        76 ~~A~   79 (341)
T PLN02776         76 PHAV   79 (341)
T ss_pred             HHHH
Confidence            7543

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.09  E-value=1.4e-09  Score=103.17  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970           83 SVINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (289)
Q Consensus        83 ~~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------  156 (289)
                      +.++++++|+|++|||.|++..+.+. +.+.+.. ..+..  .+...+.++++..++..+++.+||++|+|+||      
T Consensus         6 ~~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~-~~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~   81 (295)
T PRK12324          6 PPKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGN-LLNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKR   81 (295)
T ss_pred             ChHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHh-hcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCC
Confidence            34568999999999999999887544 3344422 11111  12122333334344567888999999999999      


Q ss_pred             ---ccchhhhHhHH
Q 022970          157 ---LPLLRWKRFAV  167 (289)
Q Consensus       157 ---lPplRlKr~p~  167 (289)
                         +|++|++....
T Consensus        82 ~RPlasG~is~~~A   95 (295)
T PRK12324         82 NRPIASGVVSVSLA   95 (295)
T ss_pred             CCCCCCCccCHHHH
Confidence               78888866643

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=4.4e-08  Score=93.26  Aligned_cols=157  Identities=18%  Similarity=0.191  Sum_probs=101.7

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      -...+++|+++.+|.-+..-.+.++.|+++|..  ...++.   .++.+++..-+..+..+++|.|+|+|||+       
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            456899999999999999999999999999964  123322   22334444445567888999999999999       


Q ss_pred             --ccchhhhHhHHHHHHHHHHHHH-------------HHHHHHHHHH--HHHHHhcCCCC-----------c--------
Q 022970          157 --LPLLRWKRFAVAAAMCILAVRA-------------VVVQLAFYLH--MQTHVYRRPAV-----------F--------  200 (289)
Q Consensus       157 --lPplRlKr~p~laa~~Il~v~a-------------~iv~lg~~l~--~~t~~~g~p~~-----------~--------  200 (289)
                        +|.++++....+.....+.+.+             .....|++.|  .+|.++||...           .        
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaA  168 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAA  168 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeee
Confidence              8899998886665554443332             2223344443  24554544111           1        


Q ss_pred             -----chHHHHHHHHHHHH------HHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHH
Q 022970          201 -----SKPLIFATAFMSFF------SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTC  251 (289)
Q Consensus       201 -----~~~V~~lt~f~~~f------~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~  251 (289)
                           +..-+.+.+.+++|      ++++..-+|      =++.|+--+|+.-|++.+.+-.
T Consensus       169 vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~D------Y~~AgiPMlPvv~G~~~t~~~I  224 (304)
T COG0109         169 VTGSISLGAILLFAIIFLWTPPHFWALALKYKDD------YKAAGIPMLPVVKGERRTKRQI  224 (304)
T ss_pred             eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHH------HHHcCCCcccccccHHHHHHHH
Confidence                 11123344455554      344444333      2578999999999999887643

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=98.23  E-value=7.8e-06  Score=77.42  Aligned_cols=188  Identities=15%  Similarity=0.138  Sum_probs=101.3

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHH-HHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSI-VSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~v-l~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk------  156 (289)
                      -+.+++.|-|++|-..-+||=+-. -|..-++........+.+-.. ..+=+.+++|-++++.|||+.|.|+|+      
T Consensus        60 ~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL-~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtk  138 (353)
T KOG1381|consen   60 SPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKML-ALFGVGALLMRGAGCTINDLWDKDLDAKVERTK  138 (353)
T ss_pred             CCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHH-HHhcccHHHhccCCceehhhhhhhhhhhHhhhc
Confidence            334589999999999998884321 122222222122222322222 122345577889999999999999999      


Q ss_pred             ---ccchhhhHhHHHHHHHHHHH--HHHHHHHHHHHHH---------------------HHHHhcCCCC-----------
Q 022970          157 ---LPLLRWKRFAVAAAMCILAV--RAVVVQLAFYLHM---------------------QTHVYRRPAV-----------  199 (289)
Q Consensus       157 ---lPplRlKr~p~laa~~Il~v--~a~iv~lg~~l~~---------------------~t~~~g~p~~-----------  199 (289)
                         +-++++..+..+..+..-..  .++.+++-.|...                     -..++|..+.           
T Consensus       139 lRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAllGw~A~~  218 (353)
T KOG1381|consen  139 LRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGALLGWCALK  218 (353)
T ss_pred             ccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhhhcchhhc
Confidence               55677766644333322111  1222222111000                     0011111000           


Q ss_pred             --cchHHHH-HHHHHHHHHHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHHHhCchhh
Q 022970          200 --FSKPLIF-ATAFMSFFSVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVGATSPFAW  273 (289)
Q Consensus       200 --~~~~V~~-lt~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~~~~~~~~  273 (289)
                        ..+++.+ +-..-..|++.-..+-..+|-+-|-+-|+++.+.++|++.=.|++ .+-..-.....+.|+.+...|
T Consensus       219 g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~  294 (353)
T KOG1381|consen  219 GSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW  294 (353)
T ss_pred             CccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc
Confidence              0111111 111122356666677778999999999999999999988766665 333333333445666666666

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.89  E-value=0.00011  Score=68.65  Aligned_cols=182  Identities=19%  Similarity=0.158  Sum_probs=105.2

Q ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHHHhhcc--cCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccc----
Q 022970           85 INALDAFYRFSRPHTVIGTALSIVSVALLAVEK--VSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIE--IDK----  156 (289)
Q Consensus        85 ~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~--~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~E--IDk----  156 (289)
                      ..+.+.|.--.||...-++..++..|+.+|..+  ..|++  ....++. .++.+....++|.+|.|||.-  ||+    
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~--l~~~fl~-a~avlavh~agnlvntyfdf~kgid~kkad  134 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR--LATFFLC-AFAVLAVHCAGNLVNTYFDFIKGIDHKKAD  134 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh--HHHHHHH-Hhhheeeecccchhhhhhhhhhcccccccc
Confidence            356778888899999999999999999998643  23443  3333333 233344567899999999974  776    


Q ss_pred             --------ccchhhhHhHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHhcC---------CCC-------------cchH
Q 022970          157 --------LPLLRWKRFAVA--AAMCILAV-RAVVVQLAFYLHMQTHVYRR---------PAV-------------FSKP  203 (289)
Q Consensus       157 --------lPplRlKr~p~l--aa~~Il~v-~a~iv~lg~~l~~~t~~~g~---------p~~-------------~~~~  203 (289)
                              +.+-..-|+...  .+.|.-++ .++.-+.-+ -|..-..||+         .+.             .-++
T Consensus       135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~kl-ehlaliyfggls~sflytggigfkyialgdliili~fgp  213 (359)
T KOG4581|consen  135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKL-EHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGP  213 (359)
T ss_pred             chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhh-hhhhhhhccCcccceeEecccceEEEeccCEEEEEeech
Confidence                    222222222211  12221111 000001000 0100001221         111             0112


Q ss_pred             HHHHHHHHHH----------H-------HHHHHHHhcCCChhhhHhcCCccchhhhChHHHHHHHHHHHHHHHHHHHHHH
Q 022970          204 LIFATAFMSF----------F-------SVVIALFKDVPDLEGDKTFGIRTFTVRLGQKRVFWTCISLLEVAYTVAILVG  266 (289)
Q Consensus       204 V~~lt~f~~~----------f-------~~~i~i~KDi~DieGDr~~Gi~Tl~i~lG~k~a~~l~~~ll~~ay~~~i~~~  266 (289)
                      +..+-+|+.-          +       +=+|-=.|+-+|.|.||+.||-|+++.+|+.....+-..++..-|++..+.+
T Consensus       214 iavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~  293 (359)
T KOG4581|consen  214 IAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFA  293 (359)
T ss_pred             HHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222220          1       1144457899999999999999999999999998888888889999888777


Q ss_pred             HhCc
Q 022970          267 ATSP  270 (289)
Q Consensus       267 ~~~~  270 (289)
                      .-.+
T Consensus       294 ~~~s  297 (359)
T KOG4581|consen  294 LHCS  297 (359)
T ss_pred             HHHH
Confidence            6443

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=93.63  E-value=0.015  Score=56.81  Aligned_cols=79  Identities=15%  Similarity=0.089  Sum_probs=56.7

Q ss_pred             hHHHHHHHHhhhccchhHHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-------
Q 022970           84 VINALDAFYRFSRPHTVIGTALSIVSVALLAVEKVSDISPLFFTGVLEAIAAALMMNIYIVGLNQLSDIEIDK-------  156 (289)
Q Consensus        84 ~~~~l~a~~~l~RPht~igt~l~vl~g~llA~~~~~~~~~~~~~~~l~~lva~l~~n~~~ngiNDyfD~EIDk-------  156 (289)
                      ..+.++.|||+++|.--+-..+...+||.+|-+.   +++.   .++..-+...+..+..|++||+++.+-|.       
T Consensus        90 p~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~  163 (409)
T KOG1380|consen   90 PGKYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQN  163 (409)
T ss_pred             CcchHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcc
Confidence            3467889999999998777788888999887442   3321   33333444445567889999999999888       


Q ss_pred             --ccchhhhHhHHH
Q 022970          157 --LPLLRWKRFAVA  168 (289)
Q Consensus       157 --lPplRlKr~p~l  168 (289)
                        +|.+|+..--.+
T Consensus       164 Rplv~g~isp~hA~  177 (409)
T KOG1380|consen  164 RPLVRGRISPLHAV  177 (409)
T ss_pred             cccccCccChHHHH
Confidence              788877655433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 22/113 (19%)

Query: 24  DRTTVVKLERY---HLKHHIRGAKD-------RSIY------HQKIKIKHLANAASGHPL 67
           D      L++Y   H+ HH++  +        R ++       QKI+    A  ASG  L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 68  QS-NQPDDYK----PKSPLNS-VINALDAFYRFSRPHTVIGTALSIVSVALLA 114
            +  Q   YK       P    ++NA+  F      + +      ++ +AL+A
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00