Citrus Sinensis ID: 023084

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccHcHccccccHHHHHcccccccccccHccccccccEEEEEEcccccccccccccccccEEEEEEccccccEHHHHHHcHHHHHHHccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHccccHHHHHccHHHHHHHHccccccccHHHHcHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccEEEEccccccEEEcc
Coil and Loop (DISEMBL)
MGRALLSHFLIvsnssprlvsslkcrsrgglpskycktpglirqnrnlathngcgfrcycnvslseptapvassssvkkrivsgvqptgsihlGNYLGAIKNWIALQNSYETLFFIVDLHaitlpydtqqLSKATRETAAIYLACgidnskasVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEkshkaggenvGVALLTYPVLMASDILlyqsdfvpvgedqKQHLELTRELAERVNYLYGgrkwkklggrggaifkvpeplippagarVMSLTDglskvlti
Flexible Loop (DISEMBL)
MGRALLSHFlivsnssprlvsslkcrsrgglpskycktpglIRQNRNLATHNGCGFRCYCNVSLSEPTapvassssvkKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYggrkwkklggrGGAIFKVpeplippagarvmsltdglskvlti
Low Complexity Region (SEG)
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNylyggrkwkklggrggAIFKVPEPLIPPAGARVMSLTDGLSKVLTI
Disordered region (IsUnstruct)
*****LSHFLIVS******V**LKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL****************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARV*************
Disordered Region (DISOPRED)
******S*FLIVSNSSPRLV*SL**********************************************************VSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF**************ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV***
Disordered Region (DISEMBL)
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS**************RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI
Disordered Region (DISPRO)
**********IVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS***********VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL*GRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q8DHG3	330	Tryptophan--tRNA ligase O	yes	no	0.679	0.590	0.632	9e-71
Q7VBM9	339	Tryptophan--tRNA ligase O	yes	no	0.689	0.584	0.572	6e-67
Q8YXE4	335	Tryptophan--tRNA ligase O	yes	no	0.686	0.588	0.584	1e-66
P73655	337	Tryptophan--tRNA ligase O	N/A	no	0.689	0.587	0.589	4e-66
Q7TTU9	337	Tryptophan--tRNA ligase O	yes	no	0.689	0.587	0.572	9e-66
Q7TV34	337	Tryptophan--tRNA ligase O	yes	no	0.689	0.587	0.576	1e-65
Q7NCG8	336	Tryptophan--tRNA ligase O	yes	no	0.700	0.598	0.560	2e-65
Q7V286	338	Tryptophan--tRNA ligase O	yes	no	0.686	0.582	0.548	5e-64
Q7MAE0	328	Tryptophan--tRNA ligase O	yes	no	0.679	0.594	0.524	2e-60
Q7VIP6	332	Tryptophan--tRNA ligase O	yes	no	0.693	0.599	0.523	3e-60

>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1

 Score =  266 bits (681), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/204 (63%), Positives = 154/204 (75%), Gaps = 9/204 (4%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
           ++SGVQPTGS+HLGNYLGAI+NW+A Q  YE  F +VDLHAIT+P+D  +L+  T   AA
Sbjct: 1   MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
           +YLACGID + A++FVQSHV AH EL WLL+  TP+ WL  MIQFKEK+ K  GENV   
Sbjct: 61  LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ-GENVAAG 119

Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
           LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+   +          I 
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171

Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
           K+PEPLIP AGARVMSLTDG  K+
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKM 195

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2

>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=trpS PE=3 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 156/208 (75%), Gaps = 10/208 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           KKR++SGVQPTG+IH+GN+LGAI+NW++LQN Y+T   +VDLHAIT+P+D QQL + T  
Sbjct: 3   KKRVLSGVQPTGAIHIGNWLGAIRNWVSLQNEYDTYVCVVDLHAITVPHDPQQLKENTLR 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+Y+ACG+D  K S+FVQSH+ AH EL WLL+  TP+ W+ +MIQFKEK+ K  G+NV
Sbjct: 63  TAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEKAIKQ-GDNV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
            + LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +RVN         +     
Sbjct: 122 SIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVN--------SRFNKES 173

Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
            +I K+P+PLI   G ++MSL DG  K+
Sbjct: 174 KSILKIPKPLIMKEGGKIMSLIDGNMKM 201

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 152/207 (73%), Gaps = 10/207 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           K+R++SGVQPTG++HLGNYLGAI+NW+ +Q+ Y+  F +VDLHAIT+P++   L+  T  
Sbjct: 3   KQRVLSGVQPTGNLHLGNYLGAIRNWVEIQDQYDNFFCVVDLHAITVPHNPATLAADTYA 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            AA+YLACGID   +++FVQSHV AH EL W L+  TP+ WL  MIQFKEK+ K  GENV
Sbjct: 63  IAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKAVKQ-GENV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
           G  LL YPVLMA+DILLYQ+D VPVGEDQKQHLELTR++  R N+ +   K         
Sbjct: 122 GAGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDK--------- 172

Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
            + K+PEPLI   GARVMSLTDG  K+
Sbjct: 173 PVMKLPEPLIRKEGARVMSLTDGTRKM 199

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpS PE=3 SV=2

 Score =  251 bits (641), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 151/207 (72%), Gaps = 9/207 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           K RI+SGVQPTG++HLGNYLGAI++W+  Q  Y+  F +VDLHAIT+P++ Q L++ T  
Sbjct: 3   KPRILSGVQPTGNLHLGNYLGAIRSWVEQQQHYDNFFCVVDLHAITVPHNPQTLAQDTLT 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            AA+YLACGID   +++FVQSHV AH EL WLL+  TP+ WL +MIQFKEK+ K  GENV
Sbjct: 63  IAALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKAVKQ-GENV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
            V LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++  R+N         K G    
Sbjct: 122 SVGLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRIN--------DKFGREDA 173

Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
            + K+PEPLI   GARVMSL DG  K+
Sbjct: 174 PVLKLPEPLIRKEGARVMSLADGTKKM 200

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=trpS PE=3 SV=1

 Score =  250 bits (638), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 119/208 (57%), Positives = 157/208 (75%), Gaps = 10/208 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           + R++SGVQPTG++HLGN+LGAI+NW+ LQ++++T   +VDLHAIT+P+D  +L+  T  
Sbjct: 3   RPRVLSGVQPTGALHLGNWLGAIRNWVDLQDTHDTFVCVVDLHAITVPHDPARLADDTLN 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+YLACG+D  + S+F+QS V AH EL WLL+  TP+ WL +MIQFKEK+ K  G+NV
Sbjct: 63  TAALYLACGMDPQRCSIFIQSQVAAHSELCWLLNCVTPLNWLERMIQFKEKAVKQ-GDNV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
            V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N  +G  +        
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173

Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
             + KVP+PLI   GARVMSLTDG SK+
Sbjct: 174 RPVLKVPKPLILKEGARVMSLTDGRSKM 201

Synechococcus sp. (strain WH8102) (taxid: 84588)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 158/208 (75%), Gaps = 10/208 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           + R++SGVQPTG++HLGN+LGAI+NW+ LQ+S++T   +VDLHAIT+P+D ++L++ +  
Sbjct: 3   RPRVLSGVQPTGALHLGNWLGAIRNWVDLQSSHDTYVCVVDLHAITVPHDPERLAEESLS 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+YLACG+D    S+FVQS V AH EL WLL+  TP+ WL +MIQFKEKS K  G+NV
Sbjct: 63  TAALYLACGMDPDLCSIFVQSQVSAHSELCWLLNCVTPLNWLERMIQFKEKSVKQ-GDNV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
            V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N  +G  +        
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173

Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
             + KVP+PLI   GARVMSL+DG SK+
Sbjct: 174 KPVLKVPDPLIIKEGARVMSLSDGRSKM 201

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421) GN=trpS PE=3 SV=1

 Score =  249 bits (636), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/214 (56%), Positives = 150/214 (70%), Gaps = 13/214 (6%)

Query: 71  VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 130
           +   S+  KRI+SG QPTG +HLGNYLGA++NW++ Q  Y++ F +VDLHA+T+P +  +
Sbjct: 1   MPDDSTAPKRILSGAQPTGQLHLGNYLGAVRNWVSEQRQYDSYFCVVDLHALTVPQEAAE 60

Query: 131 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
           L  ATR TAA+YLACGID  +++VFVQSHV AH EL WL +  TPI WL +MIQFKEK+ 
Sbjct: 61  LRAATRRTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQFKEKAI 120

Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
           K  GE VG+ L  YPVL A+DILLY+   VPVGEDQ+QHLELTR++A R N  Y      
Sbjct: 121 KL-GEEVGIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRY------ 173

Query: 251 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
                 G   +VPE LI   GARVMSL DG SK+
Sbjct: 174 ------GESLRVPEMLIRKEGARVMSLQDGTSKM 201

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpS PE=3 SV=1

 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/208 (54%), Positives = 151/208 (72%), Gaps = 11/208 (5%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           KKRI+SGVQPTG +H+GN+LGAI NW+ LQ  +ET   +VDLHAIT  YDT+QLSK T  
Sbjct: 4   KKRILSGVQPTGDLHIGNWLGAINNWVELQEKHETFLCVVDLHAITTEYDTKQLSKNTLS 63

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+Y+ACGI+    S+FVQS + AH EL W+L+  TPI W+ +MIQFKEKS + G  NV
Sbjct: 64  TAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKSIQQGN-NV 122

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
            + L  YP+LMA+DILLY +D+VPVGEDQKQHLEL +++A +R+N  +G  +        
Sbjct: 123 SIGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEE-------- 174

Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
             I K+P+P+I   G+++MSL DG  K+
Sbjct: 175 -NILKIPQPIIMKKGSKIMSLNDGSKKM 201

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7MAE0|SYW_WOLSU Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=trpS PE=3 SV=1

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 142/208 (68%), Gaps = 13/208 (6%)

Query: 77  VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
           +KKR+ SG+QPTG+IHLGNYLGA+KNW+  Q+ ++ +F IV+ HAIT+  D   L   T 
Sbjct: 2   IKKRVFSGIQPTGNIHLGNYLGAVKNWVDSQDEFDNIFCIVNSHAITIKQDPALLRAKTY 61

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
           E AA+ LACGID  K+ +F+QS V  H  L W+L    P+G +++M QFK+KS K   +N
Sbjct: 62  ELAAVLLACGIDMKKSKLFIQSEVDEHAALAWILDCNIPMGDMSRMTQFKDKSQK-NPKN 120

Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
           + + L  YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++AER N  Y            
Sbjct: 121 INIGLFNYPALMAADILLYQTDFVPVGEDQKQHLELTRDVAERFNRDY------------ 168

Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           G  FK+PEP+IP  GAR+M L D   K+
Sbjct: 169 GETFKIPEPMIPKMGARIMGLDDPTKKM 196

Wolinella succinogenes (taxid: 844)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=trpS PE=3 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/212 (52%), Positives = 144/212 (67%), Gaps = 13/212 (6%)

Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S +S KKRI SG+QPTG+IHLGNYLGA+++W+  Q  YE +F +V+ HAIT+  D Q+L 
Sbjct: 2   SHTSSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQEQYENIFCVVNSHAITIRQDPQELQ 61

Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
             T E A I LACGID  K+ +F+QS +  H  L W+L    P+G +++M QFK+KS+K 
Sbjct: 62  NKTYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQFKDKSNK- 120

Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
             +N+ V L  YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++A R N  Y        
Sbjct: 121 NPKNINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDY-------- 172

Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
               G  F +PEP+IP  GARVM L +  SK+
Sbjct: 173 ----GECFNIPEPMIPQVGARVMGLDNPQSKM 200

Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
255550960	412	tryptophanyl-tRNA synthetase, putative [	0.965	0.672	0.823	1e-130
225429361	416	PREDICTED: tryptophanyl-tRNA synthetase	0.979	0.675	0.795	1e-127
449436894	414	PREDICTED: tryptophan--tRNA ligase-like	0.968	0.671	0.792	1e-125
224075399	403	predicted protein [Populus trichocarpa]	0.916	0.652	0.790	1e-121
356518366	393	PREDICTED: tryptophanyl-tRNA synthetase-	0.794	0.580	0.850	1e-111
356510049	398	PREDICTED: tryptophanyl-tRNA synthetase-	0.724	0.522	0.918	1e-110
57899972	399	putative tryptophanyl-tRNA synthetase [O	0.919	0.661	0.714	1e-107
357136379	399	PREDICTED: tryptophanyl-tRNA synthetase-	0.919	0.661	0.714	1e-106
357136377	408	PREDICTED: tryptophanyl-tRNA synthetase-	0.937	0.659	0.711	1e-105
226491928	405	uncharacterized protein LOC100272291 [Ze	0.797	0.565	0.807	1e-105

>gi|255550960|ref|XP_002516528.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223544348|gb|EEF45869.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/284 (82%), Positives = 251/284 (88%), Gaps = 7/284 (2%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGRALLS FL+ SNS   L S+    S  GL  +Y K+P LI QN      +   FRC+C
Sbjct: 1   MGRALLSQFLL-SNSPTCLAST--SLSLNGLRRQYLKSPRLISQN----ARHAAAFRCHC 53

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           +VS ++P AP +SSS+VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN+YETLFFIVDLH
Sbjct: 54  SVSAAQPDAPASSSSAVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNTYETLFFIVDLH 113

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPYDT QLSKATR TAAIYLACG+DNS+ASVFVQSHVRAHVELMWLLSSATPIGWLN
Sbjct: 114 AITLPYDTPQLSKATRNTAAIYLACGVDNSRASVFVQSHVRAHVELMWLLSSATPIGWLN 173

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 174 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 233

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL+K+
Sbjct: 234 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLAKM 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429361|ref|XP_002273029.1| PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera] gi|296081565|emb|CBI20570.3| unnamed protein product [Vitis vinifera]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/284 (79%), Positives = 245/284 (86%), Gaps = 3/284 (1%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGR++LSHFL +SN SPR  SSL   S G +PSK  K  G I Q+  L      GFRC C
Sbjct: 1   MGRSVLSHFLNLSNPSPRFTSSL---SSGAIPSKLLKKSGSIDQHCLLNRQIRTGFRCCC 57

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           ++S+S+P    +SSS ++KRIVSGVQPTG+IHLGNYLGAIKNWI LQN+Y+T FFIVDLH
Sbjct: 58  SISVSQPAGQESSSSPLRKRIVSGVQPTGTIHLGNYLGAIKNWIPLQNTYDTFFFIVDLH 117

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+TQQL KATR+TAAIYLACG+D SKASVFVQSHVRAH ELMWLLSSATPIGWLN
Sbjct: 118 AITLPYETQQLFKATRDTAAIYLACGVDTSKASVFVQSHVRAHSELMWLLSSATPIGWLN 177

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           KMIQFKEKS K G ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 178 KMIQFKEKSRKVGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 237

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           NYLYGGRKWKKLGGRGGAIFKVPEPLIPP GARVMSLTDG SK+
Sbjct: 238 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPEGARVMSLTDGCSKM 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436894|ref|XP_004136227.1| PREDICTED: tryptophan--tRNA ligase-like [Cucumis sativus]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/285 (79%), Positives = 244/285 (85%), Gaps = 7/285 (2%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGRALLSHFL++S SS R   S    + G   +KY K   L   NR   +  G   RC C
Sbjct: 1   MGRALLSHFLVLSQSSTRFTPSPSLSAFG---TKYTKPHSLFPLNR---SSTGNSSRCCC 54

Query: 61  NVSLSEPTA-PVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
            +SL+EP A P    SS+K+RIVSGVQPTGSIHLGNYLGAIKNWI+LQ++Y+TLFFIVDL
Sbjct: 55  GISLTEPAAAPERPPSSIKRRIVSGVQPTGSIHLGNYLGAIKNWISLQDTYDTLFFIVDL 114

Query: 120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
           HAITLPYDTQQL KATR+TAAIYLACG+D SKASVFVQSHVRAHVELMWLLSSATPIGWL
Sbjct: 115 HAITLPYDTQQLHKATRDTAAIYLACGVDTSKASVFVQSHVRAHVELMWLLSSATPIGWL 174

Query: 180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
           N+MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD+VPVGEDQKQHLELTRELAER
Sbjct: 175 NRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDYVPVGEDQKQHLELTRELAER 234

Query: 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           VNYLYGGRKWKKLGGRGG IFKVPEPLIPPAGARVMSLTDGLSK+
Sbjct: 235 VNYLYGGRKWKKLGGRGGVIFKVPEPLIPPAGARVMSLTDGLSKM 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075399|ref|XP_002304617.1| predicted protein [Populus trichocarpa] gi|222842049|gb|EEE79596.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/282 (79%), Positives = 239/282 (84%), Gaps = 19/282 (6%)

Query: 5   LLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL 64
           L SH   +S+ S +L          G  SK  +    IRQN   +     GFRCYC+VS 
Sbjct: 4   LYSHIHSLSDFSSKL---------NGFASKSVR----IRQNSKYSN----GFRCYCDVSH 46

Query: 65  SEPTAPVASSSSV--KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAI 122
           S+ T+P  S +SV  KKRIVSGVQPTGS+HLGNYLGAIKNWIALQN+YETLFFIVDLHAI
Sbjct: 47  SQQTSPENSPTSVTVKKRIVSGVQPTGSVHLGNYLGAIKNWIALQNTYETLFFIVDLHAI 106

Query: 123 TLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM 182
           TLPYDT++LSKATR+TAAIYLACGID SKASVFVQSHV AHVELMWLLSSATPIGWLN+M
Sbjct: 107 TLPYDTKELSKATRDTAAIYLACGIDASKASVFVQSHVHAHVELMWLLSSATPIGWLNRM 166

Query: 183 IQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
           IQFKEKS KAG ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY
Sbjct: 167 IQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 226

Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK+
Sbjct: 227 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKM 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518366|ref|XP_003527850.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/228 (85%), Positives = 207/228 (90%)

Query: 57  RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFI 116
           R  C  +L+  ++   + + VKKR+VSGVQPTGSIHLGNY GAIKNW+ALQN Y+TLFFI
Sbjct: 30  RIRCCTTLTATSSETPTPTFVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFI 89

Query: 117 VDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPI 176
           VDLHAITLPYDTQQLSKATR TAAIYLACG+D SKASVFVQSHVRAHVELMWLLSS TPI
Sbjct: 90  VDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPI 149

Query: 177 GWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           GWLNKMIQFKEKS KAG E VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR+L
Sbjct: 150 GWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDL 209

Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           AERVN LYGGRKWKKLGGRGG IFKVPEPLIPPAGAR+MSLTDGLSK+
Sbjct: 210 AERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKM 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510049|ref|XP_003523753.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/208 (91%), Positives = 198/208 (95%)

Query: 77  VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
           VKKR+VSGVQPTGSIHLGNY GAIKNW+ALQN Y+TLFFIVDLHAITLPYDTQQLSKATR
Sbjct: 50  VKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATR 109

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
            TAAIYLACG+D SKASVFVQSHVRAHVELMWLLSS TPIGWLNKMIQFKEKS KAG E 
Sbjct: 110 STAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEE 169

Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
           VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR+LAERVN LYGGRKWKKLGGRG
Sbjct: 170 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRG 229

Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           G IFKVPEPLIPPAGAR+MSLTDGLSK+
Sbjct: 230 GTIFKVPEPLIPPAGARIMSLTDGLSKM 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57899972|dbj|BAD87908.1| putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gi|125527667|gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gi|125571983|gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/284 (71%), Positives = 225/284 (79%), Gaps = 20/284 (7%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           M R LLSH L   +  P L++S      G LPS+       +R N ++A     G     
Sbjct: 1   MSRTLLSHIL---HRPPPLLASRGGGRGGALPSRLRT----LRLNCSVAEATASG----- 48

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
                E  AP A     KKR+VSGVQPTG +HLGNYLGAIKNW++LQ+ YETLFFIVDLH
Sbjct: 49  ----DEAPAPPAR----KKRVVSGVQPTGLVHLGNYLGAIKNWVSLQDLYETLFFIVDLH 100

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+  QLSKATR TAAIYLACGID+SKAS+FVQSHVRAHVELMWLLSS+TPIGWLN
Sbjct: 101 AITLPYEAPQLSKATRSTAAIYLACGIDSSKASIFVQSHVRAHVELMWLLSSSTPIGWLN 160

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE+AERV
Sbjct: 161 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERV 220

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           N LYGGRKWKK+GGRGG++FKVPE LIPPAGARVMSLTDGLSK+
Sbjct: 221 NNLYGGRKWKKMGGRGGSLFKVPEALIPPAGARVMSLTDGLSKM 264

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136379|ref|XP_003569782.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 2 [Brachypodium distachyon]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/284 (71%), Positives = 222/284 (78%), Gaps = 20/284 (7%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           M RALLSH L   +  P L S    R  G L S+       +R N + A           
Sbjct: 1   MSRALLSHLL---HRPPLLSSRSGIRGVGALHSRLRT----LRLNCSAAE---------A 44

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
             S  E  AP A     KKR+VSGVQPTG +HLGNYLGAIKNW+ALQ+ YET FFIVDLH
Sbjct: 45  TASADETPAPPAR----KKRVVSGVQPTGLVHLGNYLGAIKNWVALQDLYETFFFIVDLH 100

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+  QLSK+TR TAAIYLACGID+SKAS+FVQSHVRAH+ELMWLLSS+TPIGWLN
Sbjct: 101 AITLPYEAPQLSKSTRSTAAIYLACGIDSSKASIFVQSHVRAHIELMWLLSSSTPIGWLN 160

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           KMIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE+AERV
Sbjct: 161 KMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERV 220

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           N LYGGRKWKK+GGRGG++FKVPE LIPPAGARVMSLTDGLSK+
Sbjct: 221 NNLYGGRKWKKMGGRGGSLFKVPEALIPPAGARVMSLTDGLSKM 264

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136377|ref|XP_003569781.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 1 [Brachypodium distachyon]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/288 (71%), Positives = 224/288 (77%), Gaps = 19/288 (6%)

Query: 1   MGRALLSHFLIVSNSSPRLVS---SLKCRS-RGGLPSKYCKTPGLIRQNRNLATHNGCGF 56
           M RALLSH L      P L+S   S  CRS R G+        G+   +  L T      
Sbjct: 1   MSRALLSHLL----HRPPLLSYAHSFFCRSSRSGIR-------GVGALHSRLRTLRLNCS 49

Query: 57  RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFI 116
                 S  E  AP A     KKR+VSGVQPTG +HLGNYLGAIKNW+ALQ+ YET FFI
Sbjct: 50  AAEATASADETPAPPAR----KKRVVSGVQPTGLVHLGNYLGAIKNWVALQDLYETFFFI 105

Query: 117 VDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPI 176
           VDLHAITLPY+  QLSK+TR TAAIYLACGID+SKAS+FVQSHVRAH+ELMWLLSS+TPI
Sbjct: 106 VDLHAITLPYEAPQLSKSTRSTAAIYLACGIDSSKASIFVQSHVRAHIELMWLLSSSTPI 165

Query: 177 GWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           GWLNKMIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE+
Sbjct: 166 GWLNKMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREI 225

Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           AERVN LYGGRKWKK+GGRGG++FKVPE LIPPAGARVMSLTDGLSK+
Sbjct: 226 AERVNNLYGGRKWKKMGGRGGSLFKVPEALIPPAGARVMSLTDGLSKM 273

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491928|ref|NP_001140250.1| uncharacterized protein LOC100272291 [Zea mays] gi|194698694|gb|ACF83431.1| unknown [Zea mays] gi|414880562|tpg|DAA57693.1| TPA: hypothetical protein ZEAMMB73_474699 [Zea mays]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/229 (80%), Positives = 202/229 (88%)

Query: 56  FRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF 115
             C    ++  PT    +  + KKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ+SYET FF
Sbjct: 42  LNCSAVEAVPGPTEEAPAPQARKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDSYETFFF 101

Query: 116 IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 175
           IVDLHAITLPY+   LSKATR TAAIYLACG+D+SKAS+FVQSHVRAHVELMWLLSS+TP
Sbjct: 102 IVDLHAITLPYEAPLLSKATRSTAAIYLACGVDSSKASIFVQSHVRAHVELMWLLSSSTP 161

Query: 176 IGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
           IGWLN+MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE
Sbjct: 162 IGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTRE 221

Query: 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
           +AERVN LYGGRKWKKLGGRGG +FKVPE LIPPAGARVMSLTDGLSK+
Sbjct: 222 IAERVNNLYGGRKWKKLGGRGGLLFKVPEALIPPAGARVMSLTDGLSKM 270

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
TAIR|locus:2043570	412	OVA4 "ovule abortion 4" [Arabi	0.937	0.652	0.629	1.7e-84
UNIPROTKB|P00954	334	trpS "tryptophanyl-tRNA synthe	0.675	0.580	0.507	2.2e-50
TIGR_CMR|SO_0294	332	SO_0294 "tryptophanyl-tRNA syn	0.675	0.584	0.487	6.7e-49
TIGR_CMR|BA_1188	329	BA_1188 "tryptophanyl-tRNA syn	0.662	0.577	0.509	2e-47
TIGR_CMR|ECH_0167	333	ECH_0167 "tryptophanyl-tRNA sy	0.665	0.573	0.480	1.1e-46
TIGR_CMR|CPS_0480	335	CPS_0480 "tryptophanyl-tRNA sy	0.675	0.579	0.473	2.3e-46
UNIPROTKB|P67590	336	trpS "Tryptophan--tRNA ligase"	0.696	0.595	0.464	1.2e-44
UNIPROTKB|Q9KNV7	338	trpS "Tryptophan--tRNA ligase"	0.686	0.582	0.473	2.4e-44
TIGR_CMR|VC_2623	338	VC_2623 "tryptophanyl-tRNA syn	0.686	0.582	0.473	2.4e-44
TIGR_CMR|APH_0035	331	APH_0035 "tryptophanyl-tRNA sy	0.668	0.580	0.470	4.5e-43

TAIR|locus:2043570 OVA4 "ovule abortion 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 182/289 (62%), Positives = 212/289 (73%)

Query:     1 MGRAL-LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
             MG A  LSHFLI+S+S  R        SR G  ++    P  +  + +  +  G GFRC 
Sbjct:     1 MGHATSLSHFLILSSS--RF-------SRLGSLTRLLSKPTSLSGSFSSISVTGQGFRCC 51

Query:    60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
             C+V+ ++ T+P     SVKKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ++YETLF IVD 
Sbjct:    52 CSVA-TDDTSP-----SVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFIIVDH 105

Query:   120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
             HAITLPYDT+QL KAT +TAA+YLACGID SKASVFVQSHV AHVELMWLL S+TPIGWL
Sbjct:   106 HAITLPYDTRQLGKATTDTAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWL 165

Query:   180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
              KMIQFKEKS K G EN  V L TYP LM +DILLYQSDFVPVGEDQKQH+EL RE+A+R
Sbjct:   166 QKMIQFKEKSRKEGVENASVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQR 225

Query:   240 VNXXXXXXX----XXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKV 284
             VN                    ++FK+PEPLIP AGARVMSLTDGLSK+
Sbjct:   226 VNHLYGGKKWKKLGGYEIFRGGSLFKIPEPLIPQAGARVMSLTDGLSKM 274

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

UNIPROTKB|P00954 trpS "tryptophanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 105/207 (50%), Positives = 141/207 (68%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  + SG QP+G + +GNY+GA++ W+ +Q+ Y  ++ IVD HAIT+  D Q+L KAT +
Sbjct:     3 KPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
             T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M QFK+KS +   EN+
Sbjct:    63 TLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYA-ENI 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXX 257
                L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N                
Sbjct:   122 NAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGE----------- 170

Query:   258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
              IFKVPEP IP +GARVMSL +   K+
Sbjct:   171 -IFKVPEPFIPKSGARVMSLLEPTKKM 196

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

TIGR_CMR|SO_0294 SO_0294 "tryptophanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 101/207 (48%), Positives = 141/207 (68%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SG QP+G + +GNY+GA++ W+A+Q+S++ L+ +VDLHAIT+  D Q L +A  +
Sbjct:     3 KPIVLSGAQPSGELTIGNYMGALRQWVAMQDSHDCLYCVVDLHAITVRQDPQALREACLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
             T A+YLACG+D  K++VF+QS V  H +L W L+  T +G L++M QFK+KS K    N+
Sbjct:    63 TLALYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDKSQKHAN-NI 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXX 257
              V L  YPVLMA+DILLYQ++ +PVG+DQKQHLELTR++A R N                
Sbjct:   122 NVGLFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFNNAYGET---------- 171

Query:   258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
               F +PEP IP  GA+VMSL D L K+
Sbjct:   172 --FTIPEPFIPEHGAKVMSLQDPLKKM 196

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|BA_1188 BA_1188 "tryptophanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 104/204 (50%), Positives = 138/204 (67%)

Query:    81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
             I SG+QP+G+I LGNYLGA+K +  LQN ++  F IV+ HAIT+P D  QL K  R  AA
Sbjct:     4 IFSGIQPSGTITLGNYLGAMKQFTELQNEHDCYFCIVNQHAITVPQDPVQLRKNIRSLAA 63

Query:   141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
             +Y+ACGID  KA++FVQS V AH +L W++ S   +G L +M Q+K+K+  +G ++V   
Sbjct:    64 LYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKA--SGRDSVPAG 121

Query:   201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXAIF 260
             LLTYP LMA+DILLY ++ VPVG+DQKQH+ELTR+LAER N                 +F
Sbjct:   122 LLTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFNKRFRE------------VF 169

Query:   261 KVPEPLIPPAGARVMSLTDGLSKV 284
              +PE  IP  GARVMSLT+   K+
Sbjct:   170 TIPEIRIPKVGARVMSLTEPTKKM 193

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|ECH_0167 ECH_0167 "tryptophanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 99/206 (48%), Positives = 140/206 (67%)

Query:    81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETA 139
             ++SG+QP+G IHLGNYLG+I+NW++LQ+SY+  FF+ DLH +T   Y++ +L + +  T 
Sbjct:     6 VLSGIQPSGGIHLGNYLGSIRNWVSLQSSYKCFFFLADLHTLTSNNYNSAELKQNSINTL 65

Query:   140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS-HKAGGENVG 198
             A YLACGID +K+ +FVQS + AH EL+W+ S  T  G LN+M QFKEKS +K     +G
Sbjct:    66 ATYLACGIDPNKSVLFVQSSIHAHAELLWIFSCITSTGQLNRMTQFKEKSRNKVSTACLG 125

Query:   199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
               L +YPVLMA+DIL+Y+++ VPVG DQKQHLELTR++A   N                 
Sbjct:   126 --LYSYPVLMAADILIYKANIVPVGIDQKQHLELTRDIAMNFNSTYNTQY---------- 173

Query:   259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
              F++PEPLI    A++M+L +G  K+
Sbjct:   174 -FQIPEPLIMQESAKIMNLRNGKKKM 198

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|CPS_0480 CPS_0480 "tryptophanyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 98/207 (47%), Positives = 137/207 (66%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SG QP+G + +GNYLGA+K W+ +Q+++E  + +VD HAIT+      L  AT +
Sbjct:     4 KPIVLSGCQPSGELTIGNYLGALKQWVNMQSTHECYYMLVDQHAITVRPKAADLRNATLD 63

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               A+YLACG+D  ++++F+QSHV AH +L W+L+  T +G LN+M Q+K+KS K+   N+
Sbjct:    64 GLALYLACGVDPEQSTIFIQSHVPAHAQLSWVLNCYTQMGELNRMTQYKDKSQKSEA-NM 122

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXX 257
                L TYPVLMA+DILLY +D VPVG+DQKQHLEL R++A R N                
Sbjct:   123 NSGLFTYPVLMAADILLYGADRVPVGDDQKQHLELARDIATRFNNLYGD----------- 171

Query:   258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
              IF VP+P IP  GARVMSL +   K+
Sbjct:   172 -IFTVPDPFIPEHGARVMSLLEPTKKM 197

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|P67590 trpS "Tryptophan--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 99/213 (46%), Positives = 133/213 (62%)

Query:    73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
             S+ +  +RI SGVQPT  S+HLGN LGA+  W+ LQ+ ++  F +VDLHAIT+P D + L
Sbjct:     2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQDDHDAFFCVVDLHAITIPQDPEAL 61

Query:   132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
              + T  TAA YLA GID  +A++FVQS V AH +L W+L   T  G  ++M QFK+KS +
Sbjct:    62 RRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSAR 121

Query:   192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 251
              G E   V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N          
Sbjct:   122 QGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPGTLV-- 179

Query:   252 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKV 284
                       VP+ LIP   A++  L D  SK+
Sbjct:   180 ----------VPDVLIPKMTAKIYDLQDPTSKM 202

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|Q9KNV7 trpS "Tryptophan--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 98/207 (47%), Positives = 132/207 (63%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L +AT +
Sbjct:     3 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS +   + V
Sbjct:    63 ALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYAND-V 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXX 257
                L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N                
Sbjct:   122 NAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ--------- 172

Query:   258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
              IF +PEP IP   ARVMSL D   K+
Sbjct:   173 PIFTIPEPYIPTVNARVMSLQDATKKM 199

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|VC_2623 VC_2623 "tryptophanyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 98/207 (47%), Positives = 132/207 (63%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L +AT +
Sbjct:     3 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS +   + V
Sbjct:    63 ALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYAND-V 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXX 257
                L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N                
Sbjct:   122 NAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ--------- 172

Query:   258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
              IF +PEP IP   ARVMSL D   K+
Sbjct:   173 PIFTIPEPYIPTVNARVMSLQDATKKM 199

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|APH_0035 APH_0035 "tryptophanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 97/206 (47%), Positives = 130/206 (63%)

Query:    81 IVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRET 138
             I S VQP+G S+HLGNYLGA+K W+ALQ++ + +F IVD+HA+T    +T  +   T   
Sbjct:     2 IFSAVQPSGGSLHLGNYLGAVKKWVALQDAGKCVFCIVDMHALTSGSAETLSIRANTLSL 61

Query:   139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
              A Y+ACGID +KA VF+QS V  H EL W+L   TP+GWLN+M QFK+KS ++      
Sbjct:    62 LASYIACGIDPAKAVVFLQSSVPEHAELCWILGCLTPVGWLNRMTQFKDKS-RSDSYRAN 120

Query:   199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             + L +YPVLMA+DILLY++D VPVG DQKQHLEL + +A   N                 
Sbjct:   121 LGLYSYPVLMAADILLYKADLVPVGNDQKQHLELAQSIARTFNTIYGVD----------- 169

Query:   259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
              F +PE +   + AR+MSL  G  K+
Sbjct:   170 FFCIPEAMPFDSAARIMSLKTGTKKM 195

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.2	0.824
3rd Layer	6.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00031274	aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.114390001	Predicted protein (351 aa)	•						•		0.920
	gw1.XI.471.1	tryptophan synthase, beta chain (EC-4.2.1.20) (398 aa)	•					•	•		0.909
	fgenesh4_pg.C_LG_XIII000422	tryptophan synthase, beta chain (EC-4.2.1.20) (410 aa)	•					•	•		0.907
	estExt_Genewise1_v1.C_LG_IX0414	SubName- Full=Putative uncharacterized protein; (404 aa)					•	•	•		0.903
	gw1.XI.1444.1	aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)	•			•			•		0.900
	fgenesh4_pg.C_scaffold_803000002	hypothetical protein (316 aa)						•			0.899
	estExt_fgenesh4_pg.C_LG_II0422	SubName- Full=Putative uncharacterized protein; (310 aa)	•					•	•		0.897
	estExt_fgenesh4_pg.C_LG_V1322	tryptophan synthase (EC-4.2.1.20) (310 aa)	•					•	•		0.896
	gw1.XI.1757.1	tryptophan synthase, beta chain (EC-4.2.1.20) (378 aa)	•					•	•		0.888
	gw1.XII.1858.1	anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)	•						•		0.861

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	287
PLN02886	389	PLN02886, PLN02886, aminoacyl-tRNA ligase	1e-168
PRK00927	333	PRK00927, PRK00927, tryptophanyl-tRNA synthetase;	1e-129
COG0180	314	COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans	1e-94
cd00806	280	cd00806, TrpRS_core, catalytic core domain of tryp	3e-92
TIGR00233	327	TIGR00233, trpS, tryptophanyl-tRNA synthetase	2e-81
pfam00579	291	pfam00579, tRNA-synt_1b, tRNA synthetases class I	4e-67
PRK12283	398	PRK12283, PRK12283, tryptophanyl-tRNA synthetase;	4e-65
PRK12282	333	PRK12282, PRK12282, tryptophanyl-tRNA synthetase I	3e-60
PRK12556	332	PRK12556, PRK12556, tryptophanyl-tRNA synthetase;	1e-52
PRK12284	431	PRK12284, PRK12284, tryptophanyl-tRNA synthetase;	4e-42
cd00395	273	cd00395, Tyr_Trp_RS_core, catalytic core domain of	2e-29
PRK12285	368	PRK12285, PRK12285, tryptophanyl-tRNA synthetase;	7e-09
cd00802	143	cd00802, class_I_aaRS_core, catalytic core domain	8e-06
TIGR00234	377	TIGR00234, tyrS, tyrosyl-tRNA synthetase	1e-05
PRK08560	329	PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid	0.002

>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase

 Score =  471 bits (1215), Expect = e-168
 Identities = 183/257 (71%), Positives = 204/257 (79%), Gaps = 6/257 (2%)

Query: 27  SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
           S  G   +    PG +  +   A+   C   C    + + P        + KKR+VSGVQ
Sbjct: 1   SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54

Query: 87  PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 146
           PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55  PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114

Query: 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206
           ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174

Query: 207 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 266
           LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234

Query: 267 IPPAGARVMSLTDGLSK 283
           IPPAGARVMSLTDG SK
Sbjct: 235 IPPAGARVMSLTDGTSK 251

Length = 389

>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed

 Score =  369 bits (949), Expect = e-129
 Identities = 123/206 (59%), Positives = 148/206 (71%), Gaps = 13/206 (6%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           KKR++SG+QPTG +HLGNYLGAIKNW+ LQ+ YE  F I DLHA+T+P D ++L + TRE
Sbjct: 1   KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRE 60

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            AA YLACGID  K+++FVQSHV  H EL W+L+  TP+G L +M QFK+KS K   ENV
Sbjct: 61  LAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK-QKENV 119

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
              L TYPVLMA+DILLY++D VPVGEDQKQHLELTR++A R N LYG            
Sbjct: 120 SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGE----------- 168

Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSK 283
            +F VPEPLIP  GARVM L     K
Sbjct: 169 -VFPVPEPLIPKVGARVMGLDGPTKK 193

Length = 333

>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  281 bits (722), Expect = 1e-94
 Identities = 112/211 (53%), Positives = 141/211 (66%), Gaps = 19/211 (9%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITLPYDT--QQLSKA 134
           K R++SG+QP+G +HLGNYLGAI+NW+ LQ  Y E  FFI DLHAIT+  D   + L +A
Sbjct: 5   KFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQA 64

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           TRE AA YLA G+D  K+++F+QS V  H EL WLLS  T  G L +M QFK+KS K G 
Sbjct: 65  TREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG- 123

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
           E++ + LLTYPVL A+DILLYQ+  VPVGEDQ QHLELTR++A R N+LYG         
Sbjct: 124 ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGE-------- 175

Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDG--LSK 283
               +F +PE LI    AR+  L     +SK
Sbjct: 176 ----VFPLPEALISKV-ARLPGLDGPGKMSK 201

Length = 314

>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase

 Score =  274 bits (702), Expect = 3e-92
 Identities = 101/206 (49%), Positives = 130/206 (63%), Gaps = 17/206 (8%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRE 137
           R++SG+QP+GS+HLG+YLGA + W+ LQ + YE  FFI DLHA+T+   D ++L + TRE
Sbjct: 1   RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRE 60

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            A  YLACG+D  K+++F QS V  H EL WLLS     G L +M  FK+KS  A GE+V
Sbjct: 61  NAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKS--AQGESV 118

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
            + LLTYPVL A+DILLY++  VPVG DQ  HLELTR++A R N LYG            
Sbjct: 119 NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGE----------- 167

Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSK 283
            IF  P  L+   GA +  L     K
Sbjct: 168 -IFPKPAALLSK-GAFLPGLQGPSKK 191

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 280

>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase

 Score =  248 bits (634), Expect = 2e-81
 Identities = 97/203 (47%), Positives = 119/203 (58%), Gaps = 16/203 (7%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATR 136
           K R+++G+QP+G +HLG+YLGAI+     Q   E    I DLHAIT+   D   L KA  
Sbjct: 2   KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKQTDPDALRKARE 61

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
           E AA YLA G+D  K  +F+QS    H EL WLLS     G L +M QFK+KS     EN
Sbjct: 62  ELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQA---EN 118

Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
           V + LL+YPVL A+DILLYQ+D VPVG DQ QHLELTR+LAER N  +            
Sbjct: 119 VPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKF------------ 166

Query: 257 GAIFKVPEPLIPPAGARVMSLTD 279
              F  PE LI     R+M L+ 
Sbjct: 167 KNFFPKPESLISKFFPRLMGLSG 189

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model [Protein synthesis, tRNA aminoacylation]. Length = 327

>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y)

 Score =  210 bits (536), Expect = 4e-67
 Identities = 68/211 (32%), Positives = 96/211 (45%), Gaps = 27/211 (12%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD---TQQLSKAT 135
           R+ +G  PTG +HLG YL  +   +  Q + +E  F I DL AI         ++L    
Sbjct: 7   RVYTGFDPTGPLHLG-YLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERKLLSRE 65

Query: 136 RETAAI--YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
                    LACG+D  K+ +   S    H+EL WLL        LN+M+QFK+   +  
Sbjct: 66  EVLENAKAQLACGLDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFKDVKKRLK 125

Query: 194 -GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
               + +   TYP+L A+DILL ++D  P G DQ  H+EL R+LA R N           
Sbjct: 126 QNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV-------- 177

Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                  FK P  L  P    +++  DG  K
Sbjct: 178 -------FKKPVGLTNP----LLTGLDGGKK 197

Length = 291

>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed

 Score =  208 bits (532), Expect = 4e-65
 Identities = 79/193 (40%), Positives = 123/193 (63%), Gaps = 11/193 (5%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRE 137
            R++SG++PTG +HLG+Y G +KNW+ LQ+ YE  FF+ D HA+T  Y+T + + K   +
Sbjct: 3   DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWD 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               +LA G+D ++A++F+QS V  H EL  LLS  TP+GWL ++  +K++  K   +++
Sbjct: 63  MVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDL 122

Query: 198 GV-ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK-------- 248
                L YP+L ++DIL+Y++  VPVGEDQ  H+E+TRE+A R N+LYG           
Sbjct: 123 STYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREPGFEEKAEA 182

Query: 249 -WKKLGGRGGAIF 260
             KKLG +   ++
Sbjct: 183 AIKKLGKKRAKLY 195

Length = 398

>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed

 Score =  193 bits (494), Expect = 3e-60
 Identities = 74/208 (35%), Positives = 114/208 (54%), Gaps = 15/208 (7%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR 136
           K  I++G +PTG +HLG+Y+G++KN +ALQN +E    I D  A+T    + +++ +   
Sbjct: 2   KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNIL 61

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK-SHKAGGE 195
           E A  YLA GID +K+++F+QS +    EL     +   +  L +    K + + K  G 
Sbjct: 62  EVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGR 121

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255
           ++    LTYPV  A+DI  +++  VPVG+DQ   +E TRE+  R N LY           
Sbjct: 122 SIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLY----------- 170

Query: 256 GGAIFKVPEPLIPPAGARVMSLTDGLSK 283
           G  +   PE L+P AG R+  L DG +K
Sbjct: 171 GTDVLVEPEALLPEAG-RLPGL-DGKAK 196

Length = 333

>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional

 Score =  174 bits (443), Expect = 1e-52
 Identities = 83/218 (38%), Positives = 126/218 (57%), Gaps = 27/218 (12%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKAT 135
           +K +++G++PTG  HLGNY+GAIK  + +  +YE   L+FI D HA+   +D +Q    T
Sbjct: 3   EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYT 62

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKA 192
           RE AA +L+ G+D      + QS V    EL W+LS  TP G +N+   +K   +++ +A
Sbjct: 63  REVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEA 122

Query: 193 G-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 247
           G     G N+G  L TYP+LMA+DILL+Q+  VPVG+DQ QH+E+ R++A   N+ +   
Sbjct: 123 GLDLDAGVNMG--LYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTF--- 177

Query: 248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG--LSK 283
                    G  F +PE +I      ++   DG  +SK
Sbjct: 178 ---------GDTFTLPEYVI-QEEGAILPGLDGRKMSK 205

Length = 332

>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed

 Score =  149 bits (378), Expect = 4e-42
 Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 8/175 (4%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIA--LQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           R+++G+  TG+ HLGNY GAI+  IA   Q   E+ +F+ D HA+    D  ++ ++T E
Sbjct: 4   RVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLE 63

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKAGG 194
            AA +LA G+D  + + + QS +    EL WLL+     G LN+   +K   +K+  AG 
Sbjct: 64  IAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGE 123

Query: 195 E---NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 246
           +    V   L  YPVLMA+DIL++ +  VPVG DQ QH+E+ R++A+R N+LYGG
Sbjct: 124 DPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGG 178

Length = 431

>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

 Score =  112 bits (280), Expect = 2e-29
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 46/220 (20%)

Query: 81  IVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT----------LPYDT 128
           +  G+ PT  S+H+G+ +G +  +   Q++ +  +F I     I              D 
Sbjct: 2   LYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP 60

Query: 129 QQLSKATRETAAIYLACGIDNS--KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMI 183
           +++ +  R  AA YLA GI     +A++F  S      AH++ +  L     + ++ +  
Sbjct: 61  EEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----DFVPVGEDQKQHLELTRELAER 239
            F+ +S +     +     TYP L A+D LL  +    D  P G DQ  ++ L RELA R
Sbjct: 121 SFQSRSEEG----ISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARR 176

Query: 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD 279
            N                  F + E L  P    V  L  
Sbjct: 177 FN-----------------GFTIAEGLTIP---LVTKLDG 196

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 273

>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLS-----KA 134
           + +G  P+G +H+G+ +         Q     ++  I D  A    Y  + LS     + 
Sbjct: 69  VYTGFMPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEA----YAARGLSWEETREW 123

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
             E     +A G D  K  ++ QS      +L      A  +    K + F E     G 
Sbjct: 124 AYEYILDLIALGFDPDKTEIYFQSENIKVYDL------AFELA---KKVNFSELKAIYGF 174

Query: 194 GENVGVALLTYPVLMASDILLYQSDF------VPVGEDQKQHLELTRELAERVNYLYGGR 247
                +  + YP   A+DIL  Q +       VPVG DQ  H+ LTR++AER++  YG  
Sbjct: 175 TGETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFI 234

Query: 248 K 248
           K
Sbjct: 235 K 235

Length = 368

>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 35/206 (16%), Positives = 60/206 (29%), Gaps = 71/206 (34%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
             SG+ P G +H+G+    +     L  +Y  L + V                       
Sbjct: 2   TFSGITPNGYLHIGHLRTIVTFDF-LAQAYRKLGYKV----------------------- 37

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
             +A  ID++   +   ++ +         + A    W+ ++                  
Sbjct: 38  RCIAL-IDDAGGLIGDPANKK------GENAKAFVERWIERIK----------------E 74

Query: 201 LLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
            + Y  L A+D LL    + D    G DQ  H+EL  EL ++                  
Sbjct: 75  DVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---------------- 118

Query: 258 AIFKVPEPLIPP----AGARVMSLTD 279
                P  L       A    MS + 
Sbjct: 119 -GPARPFGLTFGRVMGADGTKMSKSK 143

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143

>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-ITLPYDTQQLSK-A 134
           K ++  G  PT  S+HLG+ +  +K     Q  +E +  + D  A I  P    +  K  
Sbjct: 30  KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLL 89

Query: 135 TRETAAIY-------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 187
           TRE            +A  +D  KA     S     +  +  +     I  +N+M++   
Sbjct: 90  TREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDA 149

Query: 188 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 247
            S +     + ++   YP+L A D +    D    G DQ  ++   R+L  R        
Sbjct: 150 FSSRL-ERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNILKGRDLIRRNL------ 202

Query: 248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280
               LG      F +  PL+ PA    M  ++G
Sbjct: 203 --PSLG------FGLTVPLLTPADGEKMGKSEG 227

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples [Protein synthesis, tRNA aminoacylation]. Length = 377

>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 18/168 (10%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+ L   K    LQ + ++    + D HA +    D +++ K       +
Sbjct: 36  GFEPSGKIHLGHLLTMNK-LADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94

Query: 142 YLACGIDNSKASVFV-----QSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGGE 195
           + A G+D  K   FV     Q      + ++ L  + T    L +  +       +   E
Sbjct: 95  FEALGLDPDKTE-FVLGSEFQLDKEYWLLVLKLAKNTT----LARARRSMTIMGRRM--E 147

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNY 242
              V+ L YP++  +DI     D    G DQ K H+ L RE+  ++ Y
Sbjct: 148 EPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM-LAREVLPKLGY 194

Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
PLN02886	389	aminoacyl-tRNA ligase	100.0
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	100.0
KOG2713	347	consensus Mitochondrial tryptophanyl-tRNA syntheta	100.0
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	100.0
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	100.0
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	100.0
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	100.0
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	100.0
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	100.0
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	100.0
PRK08560	329	tyrosyl-tRNA synthetase; Validated	100.0
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	100.0
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	100.0
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PRK05912	408	tyrosyl-tRNA synthetase; Validated	100.0
PLN02486	383	aminoacyl-tRNA ligase	100.0
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	100.0
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	100.0
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	100.0
KOG2144	360	consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr	99.97
KOG2145	397	consensus Cytoplasmic tryptophanyl-tRNA synthetase	99.96
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	99.93
KOG2623	467	consensus Tyrosyl-tRNA synthetase [Translation, ri	99.83
cd00808	239	GluRS_core catalytic core domain of discriminating	99.68
cd00802	143	class_I_aaRS_core catalytic core domain of class I	99.58
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	99.33
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	99.06
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	98.98
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	98.93
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	98.89
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	98.8
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	98.76
PRK12410	433	glutamylglutaminyl-tRNA synthetase; Provisional	98.69
PLN02627	535	glutamyl-tRNA synthetase	98.69
PLN03233	523	putative glutamate-tRNA ligase; Provisional	98.67
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	98.65
cd00674	353	LysRS_core_class_I catalytic core domain of class	98.64
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	98.64
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	98.63
PRK12558	445	glutamyl-tRNA synthetase; Provisional	98.62
cd09287	240	GluRS_non_core catalytic core domain of non-discri	98.61
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	98.54
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	98.5
PLN02907	722	glutamate-tRNA ligase	98.37
PLN02859	788	glutamine-tRNA ligase	98.35
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	98.02
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	97.92
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	97.92
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	97.89
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	97.88
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	97.84
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	97.84
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	97.84
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	97.78
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	97.75
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	97.43
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	97.31
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	97.29
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	97.05
KOG1149	524	consensus Glutamyl-tRNA synthetase (mitochondrial)	96.44
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	95.32
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	95.21
PLN02224	616	methionine-tRNA ligase	94.33
KOG1147	712	consensus Glutamyl-tRNA synthetase [Translation, r	94.24
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	94.03
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	93.46
PLN02610	801	probable methionyl-tRNA synthetase	92.86
PRK12268	556	methionyl-tRNA synthetase; Reviewed	92.77
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	92.53
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	92.52
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	91.72
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	91.56
PRK11893	511	methionyl-tRNA synthetase; Reviewed	90.98
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	90.54
PRK12267	648	methionyl-tRNA synthetase; Reviewed	90.4
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	89.23
PLN02946	557	cysteine-tRNA ligase	88.42
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	88.19
PLN02563	963	aminoacyl-tRNA ligase	87.78
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	87.02
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	85.42
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	84.6
PF01406	300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	83.75
KOG1148	764	consensus Glutaminyl-tRNA synthetase [Translation,	83.38
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	82.86
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	82.6
PLN02843	974	isoleucyl-tRNA synthetase	81.4
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	81.17

>PLN02886 aminoacyl-tRNA ligase

Probab=100.00  E-value=8.9e-67  Score=503.12  Aligned_cols=230  Identities=77%  Similarity=1.208  Sum_probs=209.5

Q ss_pred             eeeeccC-CCCCCCCCCCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHH
Q 023084           58 CYCNVSL-SEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR  136 (287)
Q Consensus        58 ~~~~~~~-~~~~~~~~~~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~  136 (287)
                      ||..+++ ..+.++.+++.-.++++|+||+|||.+|||||+|+|++|++||++++++|+||||||+|++.++++++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~  104 (389)
T PLN02886         25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR  104 (389)
T ss_pred             hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence            4444444 444444444444567899999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHcCCCCCceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcC
Q 023084          137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ  216 (287)
Q Consensus       137 ~~i~~~lA~GiDp~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~  216 (287)
                      +++++|+|+||||+|+.||+||++++|.+++|+|+|.+++++|+||++||++.+..+.+++++|+|+||+|||||||+|+
T Consensus       105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~  184 (389)
T PLN02886        105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ  184 (389)
T ss_pred             HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999998776546789999999999999999999


Q ss_pred             CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       217 adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|+||||+||+||+|||||||+|||+.||.+.+++.|++++.+|++|++++++.+++||||+||++|||||
T Consensus       185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS  255 (389)
T PLN02886        185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKS  255 (389)
T ss_pred             CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCC
Confidence            99999999999999999999999999998777778888888899999999988778999999998999998

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.6e-62  Score=458.29  Aligned_cols=197  Identities=56%  Similarity=0.918  Sum_probs=187.0

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEecceeecCCCCH--HHHHHHHHHHHHHHHHcCCCCCce
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKA  152 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g-~~~~ilIaD~hA~t~~~d~--~~i~~~~~~~i~~~lA~GiDp~kt  152 (287)
                      ..+++||||++|||.||||||+|++++|+.+|++ ++++|+|||+||+|.+.++  +.+++++++++++|+|+||||+|+
T Consensus         3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~   82 (314)
T COG0180           3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS   82 (314)
T ss_pred             CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence            4578999999999999999999999999999997 5999999999999998766  889999999999999999999999


Q ss_pred             EEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHH
Q 023084          153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL  232 (287)
Q Consensus       153 ~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~L  232 (287)
                      .||+||++++|.+|.|+|+|.+++++|+||.+||++..+.+ +.+++|+|.||+|||||||+|++++||||.||+||+||
T Consensus        83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL  161 (314)
T COG0180          83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL  161 (314)
T ss_pred             EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence            99999999999999999999999999999999999987765 68999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       233 aRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +||||+|||+.||            .+|++|+++++.. ++||||+++ +|||||
T Consensus       162 tRDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS  202 (314)
T COG0180         162 TRDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKS  202 (314)
T ss_pred             HHHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-Cccccc
Confidence            9999999999998            3699999999986 789999665 899998

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-61  Score=443.76  Aligned_cols=199  Identities=58%  Similarity=0.863  Sum_probs=190.2

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhccC----cEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~----~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      +.++|+||||||.+|||||+|++++|++||+.+    .++|+|+|+||+|.|.||.++|+++.++++.++||||||+|+.
T Consensus        13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~   92 (347)
T KOG2713|consen   13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS   92 (347)
T ss_pred             cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence            779999999999999999999999999999944    3799999999999999999999999999999999999999999


Q ss_pred             EEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHH
Q 023084          154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT  233 (287)
Q Consensus       154 i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~La  233 (287)
                      +|+||++++|.|+.|+|+|.+++++|+||+|||++..+.+...+++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus        93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~  172 (347)
T KOG2713|consen   93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA  172 (347)
T ss_pred             eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence            99999999999999999999999999999999999987666789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       234 Rdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |++|++||+.||.+           +|++|+.++....+||++|.||.+|||||
T Consensus       173 r~lA~~fN~~Y~~~-----------~fpvP~~il~~~~~rV~SL~dpekKMSKS  215 (347)
T KOG2713|consen  173 RHLAQAFNKTYGTE-----------IFPVPEQILRQSHARVMSLRDPEKKMSKS  215 (347)
T ss_pred             HHHHHHHhhhccCe-----------eecCcHHHHhhhhhhhhhccChhhhcccC
Confidence            99999999999964           59999999987668999999999999998

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=6.9e-61  Score=465.95  Aligned_cols=197  Identities=40%  Similarity=0.687  Sum_probs=182.8

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF  155 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~  155 (287)
                      ..+|||||+|||.+|||||+|++++|+++|+  +++++|+||||||+|++.|++++++++++++++|+||||||+|+.||
T Consensus         2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if   81 (431)
T PRK12284          2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY   81 (431)
T ss_pred             ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence            3589999999999999999999999999976  89999999999999988899999999999999999999999999999


Q ss_pred             EccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhh---C---CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHH
Q 023084          156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH  229 (287)
Q Consensus       156 ~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~---~---~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~h  229 (287)
                      +||++++|.||+|+|+|.+++++|+||.+||++..+.   +   .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus        82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH  161 (431)
T PRK12284         82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH  161 (431)
T ss_pred             ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence            9999999999999999999999999999999875432   1   145899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       230 i~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|||||||+|||+.||.+           +|++|++++...+++|||| || +|||||
T Consensus       162 lELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS  206 (431)
T PRK12284        162 IEMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKS  206 (431)
T ss_pred             HHHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCC
Confidence            999999999999999743           4999999998767899999 67 599998

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=4.5e-60  Score=450.04  Aligned_cols=196  Identities=41%  Similarity=0.687  Sum_probs=180.2

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF  155 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~  155 (287)
                      +.++|+||||||.+|||||+|++++|+++|+  +++++|+||||||++.+++++++++++++++++|+|+||||+|+.||
T Consensus         3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if   82 (332)
T PRK12556          3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY   82 (332)
T ss_pred             CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence            3589999999999999999999999999987  45599999999999877899999999999999999999999999999


Q ss_pred             EccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC------CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHH
Q 023084          156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH  229 (287)
Q Consensus       156 ~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~------~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~h  229 (287)
                      +||++++|.+|+|+++|.+++++|+||.+||++.....      ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus        83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh  162 (332)
T PRK12556         83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH  162 (332)
T ss_pred             ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence            99999999999999999999999999999999865421      246799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       230 i~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|||||+|+|||+.||.            +|++|++++++..++|||| || +|||||
T Consensus       163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS  206 (332)
T PRK12556        163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKS  206 (332)
T ss_pred             HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCC
Confidence            99999999999999983            5899999976545679999 78 599998

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.4e-59  Score=453.26  Aligned_cols=206  Identities=40%  Similarity=0.738  Sum_probs=187.3

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      -+||+||||||.+|||||+|++++|+++|++++++|+||||||+|++ .+++++++++.+++++|+|+||||+|+.||+|
T Consensus         3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q   82 (398)
T PRK12283          3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ   82 (398)
T ss_pred             cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            47999999999999999999999999999999999999999999985 49999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHH
Q 023084          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL  236 (287)
Q Consensus       158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdl  236 (287)
                      |++++|++|+|+|+|.+++++|+|+++||++..+.+ .+++++|+++||+|||||||+|++|+||||+||+||+||||||
T Consensus        83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI  162 (398)
T PRK12283         83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI  162 (398)
T ss_pred             CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence            999999999999999999999999999999876531 3578999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhCCcccc----------------------------------------------------------ccCCCCCc
Q 023084          237 AERVNYLYGGRKWK----------------------------------------------------------KLGGRGGA  258 (287)
Q Consensus       237 a~r~n~~~g~~~~~----------------------------------------------------------~~g~~~~~  258 (287)
                      |+|||+.||.+.+-                                                          -..++++.
T Consensus       163 A~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (398)
T PRK12283        163 ARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI  242 (398)
T ss_pred             HHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCc
Confidence            99999999852110                                                          01245666


Q ss_pred             ccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          259 IFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       259 ~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|+.|++++++ +++|||| || +|||||
T Consensus       243 ~~~~P~~~~~~-~~~I~gL-dg-~KMSKS  268 (398)
T PRK12283        243 ILPEPQALLTE-ASKMPGL-DG-QKMSKS  268 (398)
T ss_pred             ccCCCcccccC-CCcccCC-CC-CcCCCC
Confidence            89999999965 4899999 88 799998

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.1e-59  Score=447.41  Aligned_cols=196  Identities=62%  Similarity=1.036  Sum_probs=184.7

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS  158 (287)
                      +++|+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus         2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS   81 (333)
T PRK00927          2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS   81 (333)
T ss_pred             CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence            58999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (287)
Q Consensus       159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~  238 (287)
                      +|++|.+++|+++|.+++++|+|+.+|+++.++.+ +++++|+|+||+|||||||++++|+||||+||+||+|||||||+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~  160 (333)
T PRK00927         82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR  160 (333)
T ss_pred             CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999998865433 67899999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +||+.||.            +|++|+++++..+++||||+++++|||||
T Consensus       161 ~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS  197 (333)
T PRK00927        161 RFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKS  197 (333)
T ss_pred             Hhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCC
Confidence            99999973            58999999987667899996565799998

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=100.00  E-value=2.5e-58  Score=437.48  Aligned_cols=194  Identities=50%  Similarity=0.739  Sum_probs=182.4

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCC--CHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV  154 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~--d~~~i~~~~~~~i~~~lA~GiDp~kt~i  154 (287)
                      +++++|+|++|||.+|||||+++++.|..+|.+++++|+||||||+|++.  +++.+++++++++++|+|+||||+|++|
T Consensus         1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i   80 (328)
T TIGR00233         1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI   80 (328)
T ss_pred             CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence            46799999999999999999999999988888999999999999999865  8899999999999999999999999999


Q ss_pred             EEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHH
Q 023084          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR  234 (287)
Q Consensus       155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaR  234 (287)
                      |+||++++|+++.|.++|.+|+++|+|+.+||++..   .+++++|+|+||+|||||||++++|+||||+||+||+||||
T Consensus        81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR  157 (328)
T TIGR00233        81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR  157 (328)
T ss_pred             EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence            999999999999999999999999999999998752   26789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |+|+|||+.||.            +|++|+++++++.++|||| +| +|||||
T Consensus       158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS  196 (328)
T TIGR00233       158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKS  196 (328)
T ss_pred             HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCC
Confidence            999999999973            5999999999887899999 66 799998

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=100.00  E-value=2.7e-57  Score=421.88  Aligned_cols=193  Identities=52%  Similarity=0.874  Sum_probs=182.6

Q ss_pred             eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~-d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      ++|+|++|||.+|||||++++.+|++||+ |++++|+|||+||+|++. +++++++++++++++|+|+|+||+|+.||+|
T Consensus         1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q   80 (280)
T cd00806           1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ   80 (280)
T ss_pred             CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence            58999999999999999998899999999 999999999999999976 9999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (287)
Q Consensus       158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla  237 (287)
                      |++++|.++.|+|+|.+++++|+|+.+|+++.+.  .+++++|+|+||+||||||+++++|+||||.||++|+||+||+|
T Consensus        81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia  158 (280)
T cd00806          81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA  158 (280)
T ss_pred             CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence            9999999999999999999999999999998664  36789999999999999999999999999999999999999999


Q ss_pred             HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|||+.||.            +|++|++++++ +++||||++|++|||||
T Consensus       159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS  195 (280)
T cd00806         159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKS  195 (280)
T ss_pred             HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCC
Confidence            999998873            59999999985 46799997777899998

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=100.00  E-value=6.4e-57  Score=428.61  Aligned_cols=197  Identities=37%  Similarity=0.612  Sum_probs=182.4

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      +.++|+|++|||.+|||||++++++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|++||+
T Consensus         2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~   81 (333)
T PRK12282          2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI   81 (333)
T ss_pred             CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence            45899999999999999999999999999996679999999999997 68999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHH
Q 023084          157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE  235 (287)
Q Consensus       157 qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRd  235 (287)
                      ||+|++|.++.|.++|.+++++++|+.+||++..+.+ ++++++|+++||+||||||+++++|+||||+||+||+||+||
T Consensus        82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd  161 (333)
T PRK12282         82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE  161 (333)
T ss_pred             CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence            9999999999999999999999999999998755443 367899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       236 la~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|++||+.||.+           +|..|++++.. +++|||| +|.+|||||
T Consensus       162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS  200 (333)
T PRK12282        162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKS  200 (333)
T ss_pred             HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCC
Confidence            999999988753           48899988765 4679999 787899998

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=3.4e-53  Score=407.68  Aligned_cols=184  Identities=25%  Similarity=0.350  Sum_probs=173.6

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      ++++++|+|++|||.||||||++ +.+|++||+ |++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|+.
T Consensus        64 ~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~  142 (368)
T PRK12285         64 GKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE  142 (368)
T ss_pred             CCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence            46889999999999999999987 579999999 8999999999999998 57999999999999999999999999999


Q ss_pred             EEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhh------cCCCEEEeeccch
Q 023084          154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQK  227 (287)
Q Consensus       154 i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~------~~adlvpvG~DQ~  227 (287)
                      ||+||+++++.++.|.++|.+|+++|+|+.+|+        +++++|+++||+|||||||+      +++|+||||+||+
T Consensus       143 i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~  214 (368)
T PRK12285        143 IYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQD  214 (368)
T ss_pred             EEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchH
Confidence            999999999999999999999999999998874        46799999999999999999      7889999999999


Q ss_pred             HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ||+|||||+|+|||+.||              |++|+++++++   |||| +| +|||||
T Consensus       215 ~h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~~---lpgL-~G-~KMSkS  255 (368)
T PRK12285        215 PHIRLTRDIAERLHGGYG--------------FIKPSSTYHKF---MPGL-TG-GKMSSS  255 (368)
T ss_pred             HHHHHHHHHHHHHhhhcC--------------CCCchhHhhhc---ccCC-CC-CcCCCC
Confidence            999999999999999998              88999999876   9999 56 599998

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=4.3e-51  Score=394.80  Aligned_cols=189  Identities=21%  Similarity=0.308  Sum_probs=166.5

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+||+|||++||||++..+.+|++||+ |++++|+||||||++++   .+++++++++++++++|+|+|+||+|
T Consensus        64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k  143 (383)
T PTZ00126         64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN  143 (383)
T ss_pred             CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence            578899999999999999994332348999999 99999999999999984   59999999999999999999999999


Q ss_pred             eEEEEccc-hhhhhHHHHHHhcc----CCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084          152 ASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (287)
Q Consensus       152 t~i~~qS~-~~~~~el~w~L~~~----~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ  226 (287)
                      ++||+||+ +++|.+++|.+.+.    +++++++|+.+++.+..   .+++++|+|+||+||||||+++++|+||||.||
T Consensus       144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ  220 (383)
T PTZ00126        144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ  220 (383)
T ss_pred             eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence            99999998 57899999997664    69999999988755422   256799999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++|++||||+|++||+                 .++|.++++++   ||||+||++|||||
T Consensus       221 ~~~~~LaRdia~~~~~-----------------~~~~~~~~~~~---lpgL~dg~~KMSKS  261 (383)
T PTZ00126        221 RKVNMLAREYCDKKKI-----------------KKKPIILSHHM---LPGLLEGQEKMSKS  261 (383)
T ss_pred             HHHHHHHHHHHHHhCC-----------------CCCceeecccc---cccCCCCCCCCCcC
Confidence            9999999999999984                 23566665554   99999898999998

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=3.9e-51  Score=388.23  Aligned_cols=186  Identities=24%  Similarity=0.392  Sum_probs=167.1

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      ++++++|+|++|||.+||||+++ +.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|++
T Consensus        28 ~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~  106 (329)
T PRK08560         28 KEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE  106 (329)
T ss_pred             CCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence            46889999999999999999875 679999999 99999999999999995 7999999999999999999999999999


Q ss_pred             EEEccchhhhhH---HHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084          154 VFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (287)
Q Consensus       154 i~~qS~~~~~~e---l~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi  230 (287)
                      ||+||+|+++.+   +.|.++|.+++++++|+.+++.+  . . ++.++|+|+||+||||||++|++|+||||.||++|+
T Consensus       107 i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~  182 (329)
T PRK08560        107 FVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH  182 (329)
T ss_pred             EEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence            999999987654   44559999999999998876542  2 1 345999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|+||+|++||                  +.+|.++++++   ||||+++++|||||
T Consensus       183 ~l~Rdia~~~n------------------~~~p~~l~~~~---l~~L~g~~~KMSKS  218 (329)
T PRK08560        183 MLAREVLPKLG------------------YKKPVCIHTPL---LTGLDGGGIKMSKS  218 (329)
T ss_pred             HHHHHhhHhcC------------------CCCceEEEcCc---cCCCCCCCCCCcCC
Confidence            99999999998                  45799988876   99996666699998

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=100.00  E-value=2.2e-49  Score=367.79  Aligned_cols=181  Identities=32%  Similarity=0.514  Sum_probs=168.4

Q ss_pred             eEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 023084           80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI  147 (287)
Q Consensus        80 ~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~----------d~~~i~~~~~~~i~~~lA~Gi  147 (287)
                      .+|+||+||| .+|||||++ +.+|++||+ |++++++|||+||++++.          +++++++++++++++++|+|+
T Consensus         1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~   79 (273)
T cd00395           1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI   79 (273)
T ss_pred             CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4899999999 699999999 689999999 999999999999999843          789999999999999999999


Q ss_pred             C--CCceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCC----C
Q 023084          148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D  218 (287)
Q Consensus       148 D--p~kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~a----d  218 (287)
                      |  |+|++||.||+|+   ++.++.|.+++.+++++|.|+.+||++.   + +++++|+|+||+||||||+++++    |
T Consensus        80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~  155 (273)
T cd00395          80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD  155 (273)
T ss_pred             cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence            9  9999999999998   8999999999999999999999999875   2 56899999999999999999987    9


Q ss_pred             EEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       219 lvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +||||.||++|++++||+|+|+|.                 |+.|..+++|+   |||| +|. |||||
T Consensus       156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p~---l~~l-~G~-KMSKS  202 (273)
T cd00395         156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIPL---VTKL-DGP-KFGKS  202 (273)
T ss_pred             EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeecc---ccCC-CCC-cCCCC
Confidence            999999999999999999999972                 67899998876   9999 775 99998

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=6.4e-49  Score=365.67  Aligned_cols=194  Identities=36%  Similarity=0.600  Sum_probs=176.6

Q ss_pred             CCCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC---CHHHHHHHHHHHHHH--HHHcCCC
Q 023084           75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGID  148 (287)
Q Consensus        75 ~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~---d~~~i~~~~~~~i~~--~lA~GiD  148 (287)
                      -++++++|+||+|||.|||||+++ +.+|++||+ |++++|+|||+||++++.   +++.++++++++++.  ++|+|+|
T Consensus         2 ~~~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d   80 (292)
T PF00579_consen    2 ENKPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLD   80 (292)
T ss_dssp             THSSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred             CCCCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccC
Confidence            357899999999999999997766 579999997 999999999999999954   589999999999999  9999999


Q ss_pred             CCceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCC-CCccchhhhchHHHhhhhhhcCCCEEEeeccch
Q 023084          149 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG-ENVGVALLTYPVLMASDILLYQSDFVPVGEDQK  227 (287)
Q Consensus       149 p~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~-~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~  227 (287)
                      |+++.||+||+|.++.++.|.+.+..+..+++|+++++++..+.+. +++++|+|+||+||||||+++++|+||||.||+
T Consensus        81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~  160 (292)
T PF00579_consen   81 PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR  160 (292)
T ss_dssp             TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred             ccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence            9999999999999999999999999999999999999997777653 589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|++++||+|+|+|+..              +|++|..+++++   +|+| +|.+|||||
T Consensus       161 ~~~~l~rd~a~k~~~~~--------------~~~~p~~l~~~~---l~~l-~G~~KMSKS  202 (292)
T PF00579_consen  161 GHIELARDLARKFNYKE--------------IFPKPAGLTSPL---LPGL-DGQKKMSKS  202 (292)
T ss_dssp             HHHHHHHHHHHHHTHHS--------------TSSS-EEEEETC---BBST-TSSSBTTTT
T ss_pred             HHHHHHHHHHhhhcccc--------------cccCchheeecc---cccc-CCccccCcc
Confidence            99999999999999751              388999999997   9999 787899998

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=100.00  E-value=4e-48  Score=358.35  Aligned_cols=181  Identities=23%  Similarity=0.288  Sum_probs=164.9

Q ss_pred             ceEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 023084           79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG  146 (287)
Q Consensus        79 ~~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~lA~G  146 (287)
                      .++|+||+||| .+|||||+++ .+|++||+ |++++|+|||+||+++ |         .+++++++++++++++|+|+|
T Consensus         1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g   79 (269)
T cd00805           1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL   79 (269)
T ss_pred             CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            37999999999 7999999986 59999999 9999999999999998 5         589999999999999999999


Q ss_pred             CC--CCceEEEEccchhhhhHHHHH----HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEE
Q 023084          147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV  220 (287)
Q Consensus       147 iD--p~kt~i~~qS~~~~~~el~w~----L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlv  220 (287)
                      +|  |+|++||+||+|+++  ++|+    +++.+++++|.|+.+|+++...  .+++++|+|+||+||||||+++++|+|
T Consensus        80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~  155 (269)
T cd00805          80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ  155 (269)
T ss_pred             ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence            96  999999999999887  6676    9999999999999999887542  367899999999999999999999999


Q ss_pred             EeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       221 pvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |||.||++|++++||+|+|||                  +..|..+.+++   |||| +|. |||||
T Consensus       156 ~~G~DQ~~~i~~~rd~a~r~~------------------~~~~~~l~~~l---l~~l-~G~-KMSKS  199 (269)
T cd00805         156 LGGSDQRGNITLGRDLIRKLG------------------YKKVVGLTTPL---LTGL-DGG-KMSKS  199 (269)
T ss_pred             EecHHHHHHHHHHHHHHHHhC------------------CCCcEEEeecc---ccCC-CCC-cccCC
Confidence            999999999999999999997                  34577777777   9999 784 99998

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=5.5e-46  Score=379.28  Aligned_cols=190  Identities=22%  Similarity=0.336  Sum_probs=163.2

Q ss_pred             CCCceEEEeecCCCcchhhhH-HHHHHHHHHHhccCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNY-LGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~-vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+||+|||++||||+ +++++.|..+|+|++++|+||||||+|++   .++++++.++++++++|+|+|+||+|
T Consensus        30 ~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK  109 (682)
T PTZ00348         30 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK  109 (682)
T ss_pred             CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            457899999999999999994 56766777678899999999999999984   47889999899999999999999999


Q ss_pred             eEEEEccc-hhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC--CCCccchhhhchHHHhhhhhhcCCCEEEeeccchH
Q 023084          152 ASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ  228 (287)
Q Consensus       152 t~i~~qS~-~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~--~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~  228 (287)
                      ++||+||+ +++|.+++|.+  .++++++.++.++|+.....+  .+++++|+++||+|||||||++++|+||||.||+|
T Consensus       110 ~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~q  187 (682)
T PTZ00348        110 VLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRK  187 (682)
T ss_pred             eEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHH
Confidence            99999997 78899999998  466888888888877543222  23589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       229 hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |++||||+|+++|+.                 .+|..++++   +||||++|++|||||
T Consensus       188 h~eLaRdia~~~g~~-----------------~kpvil~~~---~LpGL~gg~~KMSKS  226 (682)
T PTZ00348        188 VNMLAREYCDLIGRK-----------------LKPVILSHH---MLAGLKQGQAKMSKS  226 (682)
T ss_pred             HHHHHHHHHHHhCCC-----------------CCceecccc---cCcCCCCCCCcCCCC
Confidence            999999999999742                 246655555   499998787899998

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=9.1e-43  Score=339.51  Aligned_cols=185  Identities=21%  Similarity=0.268  Sum_probs=158.1

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL  143 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+||+|||. ||||||++ +.+|++||+ |++++++|||+||+++ |.         +.+++++++.++ ...+
T Consensus        31 ~~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql  108 (408)
T PRK05912         31 KEPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQL  108 (408)
T ss_pred             CCCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHH
Confidence            367899999999995 99999997 579999999 8999999999999997 42         456788888765 4455


Q ss_pred             HcCCCCCc--eEEEEccchhhhhHHHHHHh---ccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---
Q 023084          144 ACGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---  215 (287)
Q Consensus       144 A~GiDp~k--t~i~~qS~~~~~~el~w~L~---~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~---  215 (287)
                      ++|+||++  ++||+||+|.++.++.|.+.   +.+++++|.++.+|+.+...  ++++++|+|+||+|||||++++   
T Consensus       109 ~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~  186 (408)
T PRK05912        109 FKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKR  186 (408)
T ss_pred             HHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhcc
Confidence            89999999  99999999999888888766   78898888888777765422  2578999999999999999999   


Q ss_pred             -CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       216 -~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                       ++|+||||.||++|++++||+|+|+|.                  +.+..+..|+   |+|+ || +|||||
T Consensus       187 ~~~~i~~gG~DQ~~ni~~grdla~r~~~------------------~~~~~l~~pl---L~~~-~G-~KMsKS  236 (408)
T PRK05912        187 YGCDLQLGGSDQWGNILSGRDLQRRYGG------------------KPQFGLTMPL---LTGL-DG-KKMGKS  236 (408)
T ss_pred             CCCCEEeccHHHHHHHHHHHHHHHHhCC------------------CCeEEEecCC---cCCC-CC-CcccCC
Confidence             999999999999999999999999973                  1244455566   9998 78 799998

>PLN02486 aminoacyl-tRNA ligase

Probab=100.00  E-value=1.3e-42  Score=335.49  Aligned_cols=183  Identities=17%  Similarity=0.272  Sum_probs=155.3

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+|++|||. |||||+++++ +.++||+  ++.++|+|+|+|+++. +.+.+++++++++++++|+|+|+||+|
T Consensus        71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k  149 (383)
T PLN02486         71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER  149 (383)
T ss_pred             CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            568999999999995 9999999976 5557998  6788999999999998 469999999999999999999999999


Q ss_pred             eEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhh------hcCC-----CE
Q 023084          152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DF  219 (287)
Q Consensus       152 t~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl------~~~a-----dl  219 (287)
                      +.||.|++|  +.+++|....     ++.|+.+++++.+.+| .++.++|+++||+|||||||      .+..     |+
T Consensus       150 t~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l  222 (383)
T PLN02486        150 TFIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL  222 (383)
T ss_pred             eEEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence            999977766  3345554332     4667888888877765 35679999999999999998      3444     99


Q ss_pred             EEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       220 vpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ||||+||+||++||||+|+|||                  +.+|..+++++   +|||+++.+|||||
T Consensus       223 VPvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~~~---lp~L~g~~~KMSkS  269 (383)
T PLN02486        223 IPCAIDQDPYFRMTRDVAPRLG------------------YYKPALIESRF---FPALQGESGKMSAS  269 (383)
T ss_pred             eecccchHHHHHHHHHHHHHhC------------------CCCcceecccc---ccCCCCCCCcCcCc
Confidence            9999999999999999999998                  45788887766   99997766899998

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.2e-41  Score=331.74  Aligned_cols=188  Identities=17%  Similarity=0.234  Sum_probs=156.7

Q ss_pred             CCCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHH
Q 023084           75 SSVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIY  142 (287)
Q Consensus        75 ~~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~  142 (287)
                      .++++++|+||+|||. +||||+++ +.+|++||+ |++++++|||+||+++ |         .+.+++++|+.++.+++
T Consensus        30 ~~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~  108 (410)
T PRK13354         30 EGKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQI  108 (410)
T ss_pred             cCCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHH
Confidence            3568999999999995 99999888 468999999 8999999999999997 4         25578999999888887


Q ss_pred             HHcCCCCCceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhc----CC
Q 023084          143 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QS  217 (287)
Q Consensus       143 lA~GiDp~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~----~a  217 (287)
                      .+ |+||++++||+||+|.++.++.|.+.+..+.-.++||+++++++.+++ ++++++++|+||+|||||++++    ++
T Consensus       109 ~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~  187 (410)
T PRK13354        109 FK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDV  187 (410)
T ss_pred             HH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCC
Confidence            76 899999999999999876666666543333333446666666665553 3578999999999999999999    99


Q ss_pred             CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |++|||.||++|++++||+|+|+|.                  ..|..+..|+   |+|+ ||+ |||||
T Consensus       188 ~iq~gG~DQ~~ni~~grdl~~r~~~------------------~~~~~lt~Pl---L~g~-dG~-KMsKS  234 (410)
T PRK13354        188 DLQIGGTDQWGNILMGRDLQRKLEG------------------EEQFGLTMPL---LEGA-DGT-KMGKS  234 (410)
T ss_pred             CEEEecHHHHHHHHHHHHHHHHhCC------------------CCceEeccCC---ccCC-CCC-ccCCC
Confidence            9999999999999999999999983                  3456666676   9998 897 99998

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=100.00  E-value=2.2e-41  Score=326.91  Aligned_cols=181  Identities=23%  Similarity=0.315  Sum_probs=154.4

Q ss_pred             CceEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 023084           78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC  145 (287)
Q Consensus        78 ~~~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~lA~  145 (287)
                      ++++|+||+||| .+||||+++ +.+|++||+ ||+++|+|||+||+++ |.         +.+++++|+ +.++.++++
T Consensus        30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~  107 (377)
T TIGR00234        30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR  107 (377)
T ss_pred             CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence            789999999999 799999998 468999999 9999999999999998 53         345555666 678889999


Q ss_pred             CCCCCceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEe
Q 023084          146 GIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV  222 (287)
Q Consensus       146 GiDp~kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpv  222 (287)
                      |+||++++|++||+|.   .+.++.|.+++.+++++|.+..+|+.+.   . +++++++|+||+|||||++++++|+|||
T Consensus       108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g  183 (377)
T TIGR00234       108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG  183 (377)
T ss_pred             hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence            9999999999999985   4778888899999999999998876543   2 4589999999999999999999999999


Q ss_pred             eccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       223 G~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |.||++|++.+||+|++++...              .|.+|.+|+++.        || .|||||
T Consensus       184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~~~--------dg-~KmgKS  225 (377)
T TIGR00234       184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLTPA--------DG-EKMGKS  225 (377)
T ss_pred             cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeecCC--------CC-CCccCC
Confidence            9999999999999999998533              266777776653        45 466665

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.7e-37  Score=296.31  Aligned_cols=184  Identities=22%  Similarity=0.276  Sum_probs=154.1

Q ss_pred             CceEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C-CCHHHHHHHHH----HHHHHH-HHcCCC
Q 023084           78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAIY-LACGID  148 (287)
Q Consensus        78 ~~~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~-~d~~~i~~~~~----~~i~~~-lA~GiD  148 (287)
                      ++++|+||+||| .+||||+++. .++.+||+ ||+++++|||+||+++ | ++.++++..++    ++++.+ .++|.+
T Consensus        32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~  110 (401)
T COG0162          32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF  110 (401)
T ss_pred             CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence            889999999999 6999999985 69999999 9999999999999999 5 45566655553    344433 356766


Q ss_pred             CC-ceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeec
Q 023084          149 NS-KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE  224 (287)
Q Consensus       149 p~-kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~  224 (287)
                      .+ +++|+++|+|.   .+.+....++..+|++++.+..+++.+...  +.++++++|+||+||++|+++++.|++.||.
T Consensus       111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~--~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~  188 (401)
T COG0162         111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLER--EQGISFTEFNYPLLQAYDFVYLNKDLQLGGS  188 (401)
T ss_pred             CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhcc--CCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence            66 99999999995   355555567889999988888776544332  2579999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       225 DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |||.++.++||+++|++                  .++|..|++|+   |.++ ||+ |||||
T Consensus       189 DQ~~ni~~grdl~rr~g------------------~~~~~~lt~PL---L~~l-dG~-KmgKs  228 (401)
T COG0162         189 DQWGNILAGRDLIRRLG------------------QKKVVGLTTPL---LTGL-DGK-KMGKS  228 (401)
T ss_pred             HHHHHHHHHHHHHHHhC------------------CCCeEEEEecc---ccCC-CCC-ccccc
Confidence            99999999999999986                  35788899998   9999 897 99998

>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1e-32  Score=254.69  Aligned_cols=184  Identities=22%  Similarity=0.200  Sum_probs=145.6

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC--CCHHHHHHHHH-HHHHHHHHcC---CCC
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATR-ETAAIYLACG---IDN  149 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~--~d~~~i~~~~~-~~i~~~lA~G---iDp  149 (287)
                      +.+.||+|++|||++|+|.++++ .+..+|-+ ||+|.||+|||||++++  ...+.+..++. |....+.++|   ++.
T Consensus        33 r~l~~YwGtaptGrpHiay~vpm-~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l  111 (360)
T KOG2144|consen   33 RALKCYWGTAPTGRPHIAYFVPM-MKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL  111 (360)
T ss_pred             cCceeeecCCCCCCcceeeeeeh-hHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence            57899999999999999998885 58888877 99999999999999995  23344444443 4444444554   445


Q ss_pred             CceEEEEccch---hhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084          150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (287)
Q Consensus       150 ~kt~i~~qS~~---~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ  226 (287)
                      ++..|...|++   .+++-..++++..++-..+++.-.  ++.+.  .+...++.++||+|||+|++++++|++++|+||
T Consensus       112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga--evvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ  187 (360)
T KOG2144|consen  112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA--EVVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ  187 (360)
T ss_pred             HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh--hHHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence            66666666765   246666777888887766665543  33333  267899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |..+.+||++++.++                  +++|.+|++|+   ||||+.| +|||||
T Consensus       188 RKIf~~A~eylp~l~------------------ykKrihLmnpM---vPGL~q~-~KMSsS  226 (360)
T KOG2144|consen  188 RKIFVLAEEYLPDLG------------------YKKRIHLMNPM---VPGLAQG-EKMSSS  226 (360)
T ss_pred             HHHHHHHHHhhhhhC------------------cccceeecCCC---Ccccccc-CccccC
Confidence            999999999999998                  46899999987   9999755 799998

>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.4e-29  Score=234.27  Aligned_cols=184  Identities=19%  Similarity=0.309  Sum_probs=155.9

Q ss_pred             CCCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhccCc--EEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCC
Q 023084           75 SSVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDN  149 (287)
Q Consensus        75 ~~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~g~~--~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp  149 (287)
                      .++|++.|||..|| +.|||||++++| .+|  ||+.++  .+|.+.|.++++.+ ...++..+.+++|+++++|+|+||
T Consensus        82 q~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp  159 (397)
T KOG2145|consen   82 QGKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDP  159 (397)
T ss_pred             cCCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCC
Confidence            35789999999999 569999999988 677  899555  69999999999984 578999999999999999999999


Q ss_pred             CceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhc-----------CC
Q 023084          150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QS  217 (287)
Q Consensus       150 ~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~-----------~a  217 (287)
                      .|+.||.+.++..-.-.   +   -++-++.+++++++.+..+| +++.++|.+.+|..|+|..+..           -.
T Consensus       160 ~kTfIFsn~~y~g~~~f---y---~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~  233 (397)
T KOG2145|consen  160 KKTFIFSNLDYMGGPAF---Y---ENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIP  233 (397)
T ss_pred             cceEEEechhhccCcHH---H---HHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCc
Confidence            99999999887321000   1   12334557777888777777 5778999999999999999873           26


Q ss_pred             CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |++|+.+||+++++++||+|+|++                  +++|..|+..+   +|.||+.+.|||.|
T Consensus       234 CLiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~stf---fpaLqG~~~KMSAS  282 (397)
T KOG2145|consen  234 CLIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHSTF---FPALQGAQTKMSAS  282 (397)
T ss_pred             eeceeeccCChHHHhhhhhhhhhC------------------CCCcceeehhh---chhhhCcccccccC
Confidence            999999999999999999999997                  68999999988   99999888999987

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=99.93  E-value=5.5e-26  Score=232.75  Aligned_cols=145  Identities=12%  Similarity=0.135  Sum_probs=123.3

Q ss_pred             cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchh-hhhHHHHH----HhccCCHHHHh
Q 023084          109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AHVELMWL----LSSATPIGWLN  180 (287)
Q Consensus       109 g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~-~~~el~w~----L~~~~t~~~L~  180 (287)
                      |++++||+|||||++|+   +|.++|++.++++++.|.|+|+|++ ++|+|+|+.. .+...||.    ++..+|+.|++
T Consensus       407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~  485 (682)
T PTZ00348        407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE  485 (682)
T ss_pred             CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence            89999999999999994   7999999999999999999999999 9999999963 33446775    77899999999


Q ss_pred             chhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 023084          181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF  260 (287)
Q Consensus       181 R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f  260 (287)
                      |+..         .+..++++++||+||++||+++++|++.+|+|||+.++||||++++.+                   
T Consensus       486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~-------------------  537 (682)
T PTZ00348        486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI-------------------  537 (682)
T ss_pred             HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-------------------
Confidence            9762         255699999999999999999999999999999999999999999532                   


Q ss_pred             CCCceecCCCCcccccCCCCCCCCCC
Q 023084          261 KVPEPLIPPAGARVMSLTDGLSKVLT  286 (287)
Q Consensus       261 ~~P~~l~~~~~~~l~gL~dg~~KMSK  286 (287)
                       .|.++++.+   +|+|..|..+|++
T Consensus       538 -~~~~~~~~~---~p~l~~~~~~~~~  559 (682)
T PTZ00348        538 -ECIQALEGR---VPALHRPGAAPAV  559 (682)
T ss_pred             -cchhhcCCC---CccccccccccCC
Confidence             344455544   7788766666665

>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.2e-20  Score=176.89  Aligned_cols=185  Identities=19%  Similarity=0.282  Sum_probs=133.4

Q ss_pred             CceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH--
Q 023084           78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL--  143 (287)
Q Consensus        78 ~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l--  143 (287)
                      |.+||+||+||.. +|+||+++.| .++.+|. ||+++-+|++.+|.++ |.         +.+.++.|.+.+...+.  
T Consensus        63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i  141 (467)
T KOG2623|consen   63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI  141 (467)
T ss_pred             CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence            5799999999975 9999999865 8888988 9999999999999998 41         12334445443333222  


Q ss_pred             --------HcCCCCCceEEEEccchhhhhHH-HHH--HhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhh
Q 023084          144 --------ACGIDNSKASVFVQSHVRAHVEL-MWL--LSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASD  211 (287)
Q Consensus       144 --------A~GiDp~kt~i~~qS~~~~~~el-~w~--L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaAD  211 (287)
                              .+|....+-.|+.|++|-+--.+ -++  .+.++.++   .|+.-..++.+.. ++..++.||+|-+|||+|
T Consensus       142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~Rvg---sMLar~SV~~RLes~~GlSftEFtYQ~lQAYD  218 (467)
T KOG2623|consen  142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVG---SMLARDSVKSRLESPNGLSFTEFTYQLLQAYD  218 (467)
T ss_pred             HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHH---HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHh
Confidence                    33555567889999998432222 222  33355555   4444445555554 568999999999999999


Q ss_pred             hhh----cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          212 ILL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       212 Il~----~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      .++    +.++++.||.|||.||+.+-|+.+|+-..            .+.+|....+|++..        +| .|..||
T Consensus       219 fy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~------------~~~vfGlT~PLlTss--------tG-~KlGKS  277 (467)
T KOG2623|consen  219 FYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPI------------QAFVFGLTFPLLTSS--------TG-AKLGKS  277 (467)
T ss_pred             HHHHHHhcCeeEEecccccccccchHHHHHHHhccc------------ccceeeeeeeeEecC--------cc-hhhccC
Confidence            998    48999999999999999999999998631            023466666676654        67 477776

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=99.68  E-value=2e-16  Score=144.92  Aligned_cols=150  Identities=21%  Similarity=0.230  Sum_probs=114.7

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEEEc
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ  157 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-------~i~~q  157 (287)
                      .|||.|||||+.+++.+|...+. +..+++-|.|    |++  .....+....+.+++.++||+||+.       .+|+|
T Consensus         9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q   82 (239)
T cd00808           9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ   82 (239)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence            57899999999999999988877 5555555888    342  2345667888899999999999974       38999


Q ss_pred             cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (287)
Q Consensus       158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla  237 (287)
                      |+..+.-+..           +++..       ..|     =|..+|++.++.|...++.++|+.|.|+..+....+.++
T Consensus        83 S~r~~~y~~~-----------~~~L~-------~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~  139 (239)
T cd00808          83 SERLEIYRKY-----------AEKLL-------EKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY  139 (239)
T ss_pred             eCCHHHHHHH-----------HHHHH-------HcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence            9853321111           01110       011     278999999999999999999999999999999999999


Q ss_pred             HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +.||                  ++.|...+.+.   |++. +| .||||+
T Consensus       140 ~aLg------------------~~~p~~~h~pl---l~~~-~g-~KLSKR  166 (239)
T cd00808         140 EALG------------------WEPPKFAHLPL---ILNP-DG-KKLSKR  166 (239)
T ss_pred             HHcC------------------CCCCceEeecc---ccCC-CC-CcccCC
Confidence            9997                  55677666665   7776 67 499996

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=99.58  E-value=1.4e-14  Score=121.42  Aligned_cols=62  Identities=35%  Similarity=0.363  Sum_probs=54.4

Q ss_pred             chHHHhhhhhhcCC---CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCC
Q 023084          204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG  280 (287)
Q Consensus       204 YPvLQaADIl~~~a---dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg  280 (287)
                      ||+.|+||++.+..   |++++|.||++|++..++++++++.                 ...|..++.++   |.+. +|
T Consensus        78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~~~---l~~~-~g  136 (143)
T cd00802          78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTFGR---VMGA-DG  136 (143)
T ss_pred             HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEeCC---eECC-CC
Confidence            99999999999998   9999999999999999999999861                 23588888776   8776 56


Q ss_pred             CCCCCCC
Q 023084          281 LSKVLTI  287 (287)
Q Consensus       281 ~~KMSKS  287 (287)
                       +|||||
T Consensus       137 -~KmSks  142 (143)
T cd00802         137 -TKMSKS  142 (143)
T ss_pred             -CcCCCC
Confidence             599998

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=99.33  E-value=8.8e-12  Score=113.78  Aligned_cols=148  Identities=21%  Similarity=0.227  Sum_probs=110.3

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhhh
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV  164 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~~  164 (287)
                      .|||.|||||...++.+|..-+. +.++++-|-|.    ++  .....+....+.+++.++||++|+ .+|+||+..+.-
T Consensus         9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~y   81 (230)
T cd00418           9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDT----DP--ERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDLY   81 (230)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcC----CC--CCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHHH
Confidence            57899999999999989876655 66666667776    32  134556788899999999999996 378999864321


Q ss_pred             HHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhh
Q 023084          165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY  244 (287)
Q Consensus       165 el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~  244 (287)
                      +.+           +++..       ..|      |..+|=.--+.|=...+.++|.-|.|+..+-..-+.+++.++   
T Consensus        82 ~~~-----------~~~L~-------~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg---  134 (230)
T cd00418          82 RAY-----------AEELI-------KKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG---  134 (230)
T ss_pred             HHH-----------HHHHH-------HcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence            110           11111       111      566776666777777899999999999999999999999987   


Q ss_pred             CCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       245 g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                                     ++.|...+.|.   |.+. +| +||||+
T Consensus       135 ---------------~~~P~~~H~pl---l~~~-~g-~KLSKr  157 (230)
T cd00418         135 ---------------WEPPRFYHFPR---LLLE-DG-TKLSKR  157 (230)
T ss_pred             ---------------CCCCeEEEeee---eeCC-CC-CCccCc
Confidence                           56798888876   7775 66 599996

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=99.06  E-value=1.2e-09  Score=103.27  Aligned_cols=172  Identities=19%  Similarity=0.244  Sum_probs=113.3

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhh-
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-  163 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~-  163 (287)
                      .|||.|||||+..++.+|...+. |.+.++-|.|.    ++  .....+....+.+++.++||++|. ..|+||+..+. 
T Consensus        13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~Y   85 (299)
T PRK05710         13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDAY   85 (299)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHHH
Confidence            46699999999999999987766 66777778885    32  234556788899999999999996 47889996432 


Q ss_pred             ---hH----HHHHHhccCCHHHHhchhc--------HHHHHhhhCC-CC--------c---------------------c
Q 023084          164 ---VE----LMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN--------V---------------------G  198 (287)
Q Consensus       164 ---~e----l~w~L~~~~t~~~L~R~~~--------~k~~~~~~~~-~~--------i---------------------~  198 (287)
                         .+    ..+.+.|.+|-.++++..+        |.-.-+.... +.        +                     .
T Consensus        86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~  165 (299)
T PRK05710         86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA  165 (299)
T ss_pred             HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence               11    1123779999998865421        0000000000 00        0                     0


Q ss_pred             c---------hhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCC
Q 023084          199 V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP  269 (287)
Q Consensus       199 ~---------g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~  269 (287)
                      +         |..+|=+-=+.|=...+.++|.=|.|...+-..-..|.+.|+                  ++.|+..|.|
T Consensus       166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~p  227 (299)
T PRK05710        166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHLP  227 (299)
T ss_pred             CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEee
Confidence            0         222222222222233478899999999888777777888776                  6789988888


Q ss_pred             CCcccccCCCCCCCCCCC
Q 023084          270 AGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       270 ~~~~l~gL~dg~~KMSKS  287 (287)
                      +   |.+. +| +|+||+
T Consensus       228 l---l~~~-~g-~kLSKr  240 (299)
T PRK05710        228 L---VLNA-DG-QKLSKQ  240 (299)
T ss_pred             c---ccCC-CC-Cccccc
Confidence            7   8786 78 599995

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=98.98  E-value=4.8e-09  Score=104.92  Aligned_cols=172  Identities=20%  Similarity=0.204  Sum_probs=113.6

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCce------EEEEc
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA------SVFVQ  157 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt------~i~~q  157 (287)
                      .|||.|||||...++.+|..-.. |.++++-|-|.       |+ ....+..+.+.+++.++||++|..      -.|+|
T Consensus        12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~Q   84 (476)
T PRK01406         12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDT-------DQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQ   84 (476)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceeh
Confidence            46799999999999999976655 65666667665       33 335557788899999999999953      15999


Q ss_pred             cchhh-h---hHHHHH----HhccCCHHHHhchhc-------------------HHHHHhhh--CC---------CC---
Q 023084          158 SHVRA-H---VELMWL----LSSATPIGWLNKMIQ-------------------FKEKSHKA--GG---------EN---  196 (287)
Q Consensus       158 S~~~~-~---~el~w~----L~~~~t~~~L~R~~~-------------------~k~~~~~~--~~---------~~---  196 (287)
                      |+..+ |   .+....    +.|.||-.+|+..-.                   -.++.+..  |.         +.   
T Consensus        85 S~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~  164 (476)
T PRK01406         85 SERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEV  164 (476)
T ss_pred             hcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCce
Confidence            99533 2   222111    678999988764311                   00000000  00         00   


Q ss_pred             -----------ccchhhh---------chHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccC
Q 023084          197 -----------VGVALLT---------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG  253 (287)
Q Consensus       197 -----------i~~g~~~---------YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g  253 (287)
                                 .+...+-         ||..+.||++-   .+.|+|..|.||..+.-.-..+.+.++            
T Consensus       165 ~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------  232 (476)
T PRK01406        165 VFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------  232 (476)
T ss_pred             EEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------
Confidence                       0001111         55556666643   588999999999999999999999886            


Q ss_pred             CCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       254 ~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                            +..|...|.++   |.++ +| +||||.
T Consensus       233 ------~~~p~~~H~pl---i~~~-~g-~klSKR  255 (476)
T PRK01406        233 ------WEVPVFAHLPL---ILGP-DG-KKLSKR  255 (476)
T ss_pred             ------CCCCeEEEeee---eeCC-CC-CcccCc
Confidence                  45688777776   7776 67 599994

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=98.93  E-value=5.6e-09  Score=105.03  Aligned_cols=177  Identities=17%  Similarity=0.180  Sum_probs=114.9

Q ss_pred             eEEEeecCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084           80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF  155 (287)
Q Consensus        80 ~iytGi~PT--G~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~-~i~~~~~~~i~~~lA~GiDp~kt~i~  155 (287)
                      .+.+-|.||  |.|||||...++.+|..-+. |.++++-|-|.       |++ ...+..+.+.+++.++|||+|. ..|
T Consensus         4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py   75 (513)
T PRK14895          4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI   75 (513)
T ss_pred             CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence            356777776  99999999999999976665 66667667776       332 3445677788999999999985 479


Q ss_pred             Eccchhh-h---hHHHHH----HhccCCHHHHhchhc----------HHHHHhhh-------C---------CCC--c--
Q 023084          156 VQSHVRA-H---VELMWL----LSSATPIGWLNKMIQ----------FKEKSHKA-------G---------GEN--V--  197 (287)
Q Consensus       156 ~qS~~~~-~---~el~w~----L~~~~t~~~L~R~~~----------~k~~~~~~-------~---------~~~--i--  197 (287)
                      +||+..+ |   .+....    +.|.||-.+|+.+-.          |....+..       +         ++.  +  
T Consensus        76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~  155 (513)
T PRK14895         76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITI  155 (513)
T ss_pred             eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEE
Confidence            9999532 2   222211    678999988765421          10000000       0         000  0  


Q ss_pred             ---cchhhhch-------HHH---------hh---hhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCC
Q 023084          198 ---GVALLTYP-------VLM---------AS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR  255 (287)
Q Consensus       198 ---~~g~~~YP-------vLQ---------aA---DIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~  255 (287)
                         =.|.+.++       +++         -+   |=...+.+.|..|.||..|.-.-..+.+.++              
T Consensus       156 ~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG--------------  221 (513)
T PRK14895        156 HDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG--------------  221 (513)
T ss_pred             EeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------------
Confidence               01122221       111         11   1122379999999999999998888988886              


Q ss_pred             CCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          256 GGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       256 ~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                          +..|...|.++   |.++ +| +||||.
T Consensus       222 ----~~~p~~~H~pl---v~~~-~g-~KLSKR  244 (513)
T PRK14895        222 ----YAVPSMTHIPL---IHGA-DG-AKLSKR  244 (513)
T ss_pred             ----CCCCeEEEEEe---EEcC-CC-Cccccc
Confidence                45688888887   8887 67 599995

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=98.89  E-value=2.1e-08  Score=100.20  Aligned_cols=172  Identities=19%  Similarity=0.195  Sum_probs=109.4

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~  163 (287)
                      .|||.|||||...++.+|..-.. |.++++-|-|.    ++  .....+..+.+.+++.++||++|. ..|+||+..+ |
T Consensus         9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y   81 (470)
T TIGR00464         9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT----DL--ERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY   81 (470)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--ccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence            47799999999999999976555 65666667665    32  123456778899999999999995 4899999533 2


Q ss_pred             hHHHHH-------HhccCCHHHHhchhc-------------------HHHHHhhh--C---------CCCc-------cc
Q 023084          164 VELMWL-------LSSATPIGWLNKMIQ-------------------FKEKSHKA--G---------GENV-------GV  199 (287)
Q Consensus       164 ~el~w~-------L~~~~t~~~L~R~~~-------------------~k~~~~~~--~---------~~~i-------~~  199 (287)
                      .+..-.       +.|.||-.+++.+-.                   -.++.+..  +         ++..       =.
T Consensus        82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~  161 (470)
T TIGR00464        82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR  161 (470)
T ss_pred             HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence            222111       668999888764311                   11110000  0         0000       00


Q ss_pred             hhhhc----------------hHHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 023084          200 ALLTY----------------PVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF  260 (287)
Q Consensus       200 g~~~Y----------------PvLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f  260 (287)
                      |.+.+                |..+   +.|=...+.|+|..|.||..+...-..+.+.++                  +
T Consensus       162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~  223 (470)
T TIGR00464       162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------W  223 (470)
T ss_pred             ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------C
Confidence            11111                1111   112122479999999999999999999999886                  4


Q ss_pred             CCCceecCCCCcccccCCCCCCCCCCC
Q 023084          261 KVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ..|...|.+.   +.++ +| +||||.
T Consensus       224 ~~p~~~H~p~---l~~~-~g-~kLSKR  245 (470)
T TIGR00464       224 KIPVFAHLPM---ILDE-DG-KKLSKR  245 (470)
T ss_pred             CCCeEEEEee---eecC-CC-cccccc
Confidence            5687777776   6666 67 599994

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=98.80  E-value=3.9e-08  Score=91.99  Aligned_cols=172  Identities=16%  Similarity=0.153  Sum_probs=110.0

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~  163 (287)
                      .|||.|||||...++.+|..-+. |..+++-|-|.    ++  .....+..+.+.+++.++||++|+ ..++||+..+ |
T Consensus         8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wLGl~wDe-~~~~QS~r~~~Y   80 (272)
T TIGR03838         8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDL----DP--PREVPGAADDILRTLEAYGLHWDG-EVVYQSQRHALY   80 (272)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC----CC--CCCChHHHHHHHHHHHHcCCCCCC-CeeeeeCCHHHH
Confidence            47899999999999999976655 65666667776    32  123445677889999999999996 3689999643 2


Q ss_pred             hHHHHH-------HhccCCHHHHhchh-----cHHHHHhh-----hCC---------C-Cc-----cchhhh--------
Q 023084          164 VELMWL-------LSSATPIGWLNKMI-----QFKEKSHK-----AGG---------E-NV-----GVALLT--------  203 (287)
Q Consensus       164 ~el~w~-------L~~~~t~~~L~R~~-----~~k~~~~~-----~~~---------~-~i-----~~g~~~--------  203 (287)
                      .+..-.       +.|.+|-.++++..     .|.-.-+.     .+.         + .+     -.|.+.        
T Consensus        81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~  160 (272)
T TIGR03838        81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG  160 (272)
T ss_pred             HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence            221111       66999999886541     11100000     000         0 00     011111        


Q ss_pred             ---------chHHHhhhh---hhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCC
Q 023084          204 ---------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG  271 (287)
Q Consensus       204 ---------YPvLQaADI---l~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~  271 (287)
                               ||..+=|..   ...+.++|.=|.|...+--.-.-|.+.|+                  ++.|+..+.|+ 
T Consensus       161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~pl-  221 (272)
T TIGR03838       161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHLPL-  221 (272)
T ss_pred             CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEechh-
Confidence                     222222222   22478999999999888877777888775                  56798888886 


Q ss_pred             cccccCCCCCCCCCCC
Q 023084          272 ARVMSLTDGLSKVLTI  287 (287)
Q Consensus       272 ~~l~gL~dg~~KMSKS  287 (287)
                        |.+. +| +|+||+
T Consensus       222 --l~~~-~g-~kLSKR  233 (272)
T TIGR03838       222 --VVNA-DG-EKLSKQ  233 (272)
T ss_pred             --hhCC-CC-Ceeecc
Confidence              7786 78 599995

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3.1e-08  Score=98.98  Aligned_cols=177  Identities=20%  Similarity=0.201  Sum_probs=114.6

Q ss_pred             EEEeecC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           81 IVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        81 iytGi~P--TG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      |.+=|.|  ||.+||||...++.+|..-+. |.++++-|-|.    ++.  ....+....+.+++.++||++|.. +|+|
T Consensus        10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q   82 (472)
T COG0008          10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWDEG-PYYQ   82 (472)
T ss_pred             eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence            5555555  599999999999999976666 66777777776    321  335567778888999999999974 8999


Q ss_pred             cchhh-hhHHHH-H------HhccCCHHHHhchhc-----------HH---------HHHhhhCC----------C----
Q 023084          158 SHVRA-HVELMW-L------LSSATPIGWLNKMIQ-----------FK---------EKSHKAGG----------E----  195 (287)
Q Consensus       158 S~~~~-~~el~w-~------L~~~~t~~~L~R~~~-----------~k---------~~~~~~~~----------~----  195 (287)
                      |+..+ |.+..- +      +.|.+|-.+|+.+-.           +.         ++....+.          +    
T Consensus        83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~  162 (472)
T COG0008          83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP  162 (472)
T ss_pred             hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence            99643 222111 1      568999876655421           10         11111000          0    


Q ss_pred             -----Cccchhhhch------HHHhhhhhh------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccccc
Q 023084          196 -----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL  252 (287)
Q Consensus       196 -----~i~~g~~~YP------vLQaADIl~------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~  252 (287)
                           +.-.|.+..+      ++.-+|.+.            ++.++|.-|.|...+=..-+-|.+.|+           
T Consensus       163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg-----------  231 (472)
T COG0008         163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG-----------  231 (472)
T ss_pred             CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------
Confidence                 0011223332      333344433            368999999999988888888888776           


Q ss_pred             CCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       253 g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                             ++.|...+.+.   |.+ -+| +||||+
T Consensus       232 -------~~~P~~~H~~l---i~~-~~g-~kLSKr  254 (472)
T COG0008         232 -------WPPPVYAHLPL---LLN-EDG-KKLSKR  254 (472)
T ss_pred             -------CCCCcEEEeee---eec-CCC-CeecCc
Confidence                   66788888776   776 466 599996

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional

Probab=98.69  E-value=1.1e-07  Score=94.14  Aligned_cols=170  Identities=21%  Similarity=0.262  Sum_probs=107.6

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-  162 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-  162 (287)
                      .|||.|||||...++.+|..-+. |.++++-|-|.       |+ ....+....+.+++.++||++|.  .|+||+..+ 
T Consensus         7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~   77 (433)
T PRK12410          7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-------DKERNIEGKDKEILEILNLFGISWDK--LVYQSENLKF   77 (433)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHH
Confidence            47899999999999999976666 66666667775       33 23456777889999999999995  699999532 


Q ss_pred             h---hHHHHH----HhccCCHHHHhchhcHHHH----------Hhh--------hC---------CC-Cc-----cchhh
Q 023084          163 H---VELMWL----LSSATPIGWLNKMIQFKEK----------SHK--------AG---------GE-NV-----GVALL  202 (287)
Q Consensus       163 ~---~el~w~----L~~~~t~~~L~R~~~~k~~----------~~~--------~~---------~~-~i-----~~g~~  202 (287)
                      |   .+....    +.|.||-.+++.+-.-...          .+.        .+         ++ .+     -.|.+
T Consensus        78 Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i  157 (433)
T PRK12410         78 HRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEV  157 (433)
T ss_pred             HHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeE
Confidence            2   222221    6789999887644221000          000        00         00 00     01111


Q ss_pred             hch----------------HHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC
Q 023084          203 TYP----------------VLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP  263 (287)
Q Consensus       203 ~YP----------------vLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P  263 (287)
                      .++                ..+   +.|=...+.++|.=|.|...+--.-..|.+.|+                  ++.|
T Consensus       158 ~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg------------------~~~p  219 (433)
T PRK12410        158 SFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALG------------------YNKE  219 (433)
T ss_pred             EeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcC------------------CCCC
Confidence            222                111   122222478899999999888777777777775                  4554


Q ss_pred             -ceecCCCCcccccCCCCCCCCCCC
Q 023084          264 -EPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       264 -~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                       +..|.|+   |.+- +| +|+||.
T Consensus       220 p~f~Hlpl---i~~~-~g-~KLSKR  239 (433)
T PRK12410        220 ITYAHLPI---ILNE-EG-KKMSKR  239 (433)
T ss_pred             CeEEEeee---eeCC-CC-Ceeecc
Confidence             7778787   7775 77 699995

>PLN02627 glutamyl-tRNA synthetase

Probab=98.69  E-value=1.1e-07  Score=96.04  Aligned_cols=178  Identities=17%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE----
Q 023084           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS----  153 (287)
Q Consensus        80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~----  153 (287)
                      ++=.-=.|||.|||||...++.+|..-+. |.++++-|-|.       |+ ....+..+.+.+++.++||++|...    
T Consensus        47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg  119 (535)
T PLN02627         47 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLARSTKESEEAVLRDLKWLGLDWDEGPDVGG  119 (535)
T ss_pred             EEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCcCcccCC
Confidence            33333456699999999999999977666 66666667775       32 2345677788999999999999642    


Q ss_pred             ---EEEccchhh-h---hHHHH----HHhccCCHHHHhchhcH-------------------HHHHhhh--CC-------
Q 023084          154 ---VFVQSHVRA-H---VELMW----LLSSATPIGWLNKMIQF-------------------KEKSHKA--GG-------  194 (287)
Q Consensus       154 ---i~~qS~~~~-~---~el~w----~L~~~~t~~~L~R~~~~-------------------k~~~~~~--~~-------  194 (287)
                         -|+||+..+ |   .+...    .+.|.||-.+++.+-.-                   .+..+..  +.       
T Consensus       120 ~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k  199 (535)
T PLN02627        120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFR  199 (535)
T ss_pred             CCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEE
Confidence               489999533 2   22111    16789998887644211                   0000000  00       


Q ss_pred             ----CCc-----cchhhhchHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCC
Q 023084          195 ----ENV-----GVALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGG  246 (287)
Q Consensus       195 ----~~i-----~~g~~~YPvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~  246 (287)
                          ..+     =-|.+.++.=..-|.+.                   .+.++|.=|.|...+--.-.-|.+.|+     
T Consensus       200 ~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg-----  274 (535)
T PLN02627        200 VPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG-----  274 (535)
T ss_pred             cCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC-----
Confidence                000     01222221111112222                   368899999998887777777777775     


Q ss_pred             ccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       247 ~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                                   +..|+..|.|+   |.+- || +||||.
T Consensus       275 -------------~~~P~f~Hlpl---i~~~-~g-~KLSKR  297 (535)
T PLN02627        275 -------------FPMPRFAHVSL---ILAP-DR-SKLSKR  297 (535)
T ss_pred             -------------CCCCeEEEccc---eeCC-CC-Cccccc
Confidence                         56798888887   7775 67 599994

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=98.67  E-value=7.9e-08  Score=96.97  Aligned_cols=175  Identities=15%  Similarity=0.076  Sum_probs=108.8

Q ss_pred             EEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        81 iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      +.+=|-  |||.|||||+..++.+|..-+. +..+++-|-|.    ++.  ....+..+.+.+++.++|++++.  +++|
T Consensus        12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT----Dp~--R~~~e~~~~I~~dL~WLGl~wD~--~~~q   83 (523)
T PLN03233         12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT----NPS--KEKAEFEESIIEDLGKIEIKPDS--VSFT   83 (523)
T ss_pred             EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC----CCC--ccchHHHHHHHHHHHHhCCCCCC--Cccc
Confidence            444454  5699999999999989876555 55555556554    321  34566788899999999999995  7899


Q ss_pred             cchhh-hhHHHHH-------HhccCCHHHHhchh-----------c-------HHHHHhh-hCC-------------CCc
Q 023084          158 SHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-AGG-------------ENV  197 (287)
Q Consensus       158 S~~~~-~~el~w~-------L~~~~t~~~L~R~~-----------~-------~k~~~~~-~~~-------------~~i  197 (287)
                      |+..+ |.+.+-.       +.|.+|-.+++..-           +       |+.+.+- ..+             .+.
T Consensus        84 Sdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~  163 (523)
T PLN03233         84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNG  163 (523)
T ss_pred             cccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCC
Confidence            99643 3222222       66899988874321           1       1111100 000             000


Q ss_pred             cchh------------------hhchHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 023084          198 GVAL------------------LTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG  256 (287)
Q Consensus       198 ~~g~------------------~~YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~  256 (287)
                      ++.-                  ..||..+=|-.+-   .+.+++.-|.|...+-..-.-+.+.++               
T Consensus       164 ~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg---------------  228 (523)
T PLN03233        164 TLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG---------------  228 (523)
T ss_pred             CCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC---------------
Confidence            1110                  0245444333322   478999999999988888888888876               


Q ss_pred             CcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          257 GAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       257 ~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                         +..|.. +.+.   ..++ +|+ ||||+
T Consensus       229 ---~~~P~~-~~f~---rln~-~~~-kLSKR  250 (523)
T PLN03233        229 ---LRRPRI-HAFA---RMNF-MNT-VLSKR  250 (523)
T ss_pred             ---CCCCee-eeeE---EECC-CCC-ccccc
Confidence               456765 3343   5566 574 99995

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=98.65  E-value=3.1e-07  Score=87.35  Aligned_cols=172  Identities=19%  Similarity=0.111  Sum_probs=103.9

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhh-
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-  163 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~-  163 (287)
                      .|||.|||||+..++.+|..-+. |.++++-|-|.    ++  .....+..+.+++++.++||++| -..|+||+..+. 
T Consensus         9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y   81 (314)
T PF00749_consen    9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT----DP--ERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY   81 (314)
T ss_dssp             -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS----ST--TTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred             CCCCCcccchhHHHHHHHHHHhccCceEEEecccc----cc--ccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence            47799999999999988876555 55666667776    32  13345677889999999999998 368889996432 


Q ss_pred             ---hHHHHH----HhccCCHHHHhchhcH---------------------HHHHhh--hC---------CCC-------c
Q 023084          164 ---VELMWL----LSSATPIGWLNKMIQF---------------------KEKSHK--AG---------GEN-------V  197 (287)
Q Consensus       164 ---~el~w~----L~~~~t~~~L~R~~~~---------------------k~~~~~--~~---------~~~-------i  197 (287)
                         .+....    +.|.||-.+++....-                     .++.+.  .+         +..       .
T Consensus        82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~  161 (314)
T PF00749_consen   82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL  161 (314)
T ss_dssp             HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred             HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence               221111    6689988876644321                     000000  00         000       0


Q ss_pred             cch-------hhhchHHHhhhh------------hhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 023084          198 GVA-------LLTYPVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA  258 (287)
Q Consensus       198 ~~g-------~~~YPvLQaADI------------l~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~  258 (287)
                      -.|       .+-.++++=+|.            ...+.++|.=|.|-..+-..-.-|.+.|+                 
T Consensus       162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg-----------------  224 (314)
T PF00749_consen  162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG-----------------  224 (314)
T ss_dssp             TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT-----------------
T ss_pred             cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC-----------------
Confidence            011       112222332322            33479999999999988888888888886                 


Q ss_pred             ccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          259 IFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       259 ~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                       ++.|...+.|+   +.+- +| +|+||+
T Consensus       225 -~~~P~~~H~pl---~l~~-~g-~kLSKR  247 (314)
T PF00749_consen  225 -WPPPPYAHLPL---ILNE-DG-KKLSKR  247 (314)
T ss_dssp             -SSS-EEEEEEE---EEET-TS-SBSSTT
T ss_pred             -CCCcceEeeee---eecC-CC-cEechh
Confidence             45688777776   6665 67 599996

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=98.64  E-value=1.5e-07  Score=91.03  Aligned_cols=80  Identities=24%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             CceEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEecceeec---------------C-C--------C-C
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAIT---------------L-P--------Y-D  127 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~-~ilIaD~hA~t---------------~-~--------~-d  127 (287)
                      +..|=||+-|||.+||||+...+  .-+.+.++  |+++ +++..|.|.-+               + |        + .
T Consensus        20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~   99 (353)
T cd00674          20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC   99 (353)
T ss_pred             eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence            56788899999999999988655  22344443  8887 55789999321               1 1        0 2


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084          128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV  160 (287)
Q Consensus       128 ~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~  160 (287)
                      ++-+.++...+.+.+..+||+.+   +|.+++.
T Consensus       100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~  129 (353)
T cd00674         100 ESYAEHFERPFEESLEKLGIEVE---FISQSQM  129 (353)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeee---eeecCCc
Confidence            23355666777788888999764   7777774

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=98.64  E-value=1.5e-07  Score=96.12  Aligned_cols=176  Identities=13%  Similarity=0.086  Sum_probs=108.9

Q ss_pred             EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      +.+=|  +|||.|||||+..++.+|..-+. +..+++-|-|.    +|.  ....+..+.+.+++.++||++|. .+++|
T Consensus        53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT----Dp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~Q  125 (601)
T PTZ00402         53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT----NPS--KEKEHFEQAILDDLATLGVSWDV-GPTYS  125 (601)
T ss_pred             eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC----CCc--ccCHHHHHHHHHHHHHCCCCCCC-ceeec
Confidence            44555  45699999999999989876665 55566556665    321  34556788899999999999985 37889


Q ss_pred             cchhh-hhHHHHH-------HhccCCHHHHhchh------c------------HHHHHh-hhCC-C------------Cc
Q 023084          158 SHVRA-HVELMWL-------LSSATPIGWLNKMI------Q------------FKEKSH-KAGG-E------------NV  197 (287)
Q Consensus       158 S~~~~-~~el~w~-------L~~~~t~~~L~R~~------~------------~k~~~~-~~~~-~------------~i  197 (287)
                      |+..+ |.+.+-.       +.|.++-.+++...      .            |+.+.. ...+ .            +.
T Consensus       126 Sdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~  205 (601)
T PTZ00402        126 SDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENK  205 (601)
T ss_pred             cccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCC
Confidence            99643 2222221       56788877664321      0            111110 0000 0            00


Q ss_pred             cch-h-----------------hhchHHHhhhhh---hcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 023084          198 GVA-L-----------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG  256 (287)
Q Consensus       198 ~~g-~-----------------~~YPvLQaADIl---~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~  256 (287)
                      +++ .                 -.||..+=|-.+   ..+.+++.-|.|...+-..-.-|.+.|+               
T Consensus       206 ~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg---------------  270 (601)
T PTZ00402        206 AMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG---------------  270 (601)
T ss_pred             CccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC---------------
Confidence            000 0                 133443333222   2478999999999988888888888775               


Q ss_pred             CcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          257 GAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       257 ~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                         +..|...+.+    +.++ +|+ ||||+
T Consensus       271 ---~~~P~~~h~~----rLn~-~g~-kLSKR  292 (601)
T PTZ00402        271 ---IRKPIVEDFS----RLNM-EYS-VMSKR  292 (601)
T ss_pred             ---CCCceEEEEe----eEcC-CCC-ccccc
Confidence               4567777665    2466 674 99995

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=98.63  E-value=1.2e-07  Score=95.58  Aligned_cols=50  Identities=22%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             cCCCEEEeeccchH-HHHHHHHHHH-HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          215 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       215 ~~adlvpvG~DQ~~-hi~LaRdla~-r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++.|+.|.|.||.. +..+++++++ .++                  .+.|..+...+   +..- +| +|||||
T Consensus       233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~~---v~~~-~G-~KMSKS  284 (510)
T PRK00750        233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYEL---FLDK-KG-EKISKS  284 (510)
T ss_pred             cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeeee---EEeC-CC-Cccccc
Confidence            47999999999999 9999999999 665                  35677777665   5543 45 699998

>PRK12558 glutamyl-tRNA synthetase; Provisional

Probab=98.62  E-value=2.1e-07  Score=92.43  Aligned_cols=170  Identities=21%  Similarity=0.177  Sum_probs=107.6

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-  162 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-  162 (287)
                      .|||.|||||+..++.+|..-+. |.++++-|-|.       |+ ....+....+.+++.++|+++|.  .|+||+..+ 
T Consensus        10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~   80 (445)
T PRK12558         10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-------DLERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDR   80 (445)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-------CcccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHH
Confidence            46799999999999999976655 66666667776       33 23455677888899999999994  799998532 


Q ss_pred             hhHHHH-------HHhccCCHHHHhchhc----------H---------HHHHhhh--CC----------CC-----ccc
Q 023084          163 HVELMW-------LLSSATPIGWLNKMIQ----------F---------KEKSHKA--GG----------EN-----VGV  199 (287)
Q Consensus       163 ~~el~w-------~L~~~~t~~~L~R~~~----------~---------k~~~~~~--~~----------~~-----i~~  199 (287)
                      +.+..-       .+.|.||-.+++.+-.          |         .+..+..  +.          ..     .=-
T Consensus        81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~  160 (445)
T PRK12558         81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIR  160 (445)
T ss_pred             HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEee
Confidence            211111       1668999888754321          0         0000000  00          00     001


Q ss_pred             hhhhchHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 023084          200 ALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF  260 (287)
Q Consensus       200 g~~~YPvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f  260 (287)
                      |.+.++.-..-|.+.                   .+.++|.=|.|...+--.-.-|.+.|+                  +
T Consensus       161 G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~  222 (445)
T PRK12558        161 GEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------A  222 (445)
T ss_pred             eEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------C
Confidence            223222222223332                   268899999998887776667777775                  5


Q ss_pred             CCCceecCCCCcccccCCCCCCCCCCC
Q 023084          261 KVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +.|+..|.|+   |.+- || +|+||.
T Consensus       223 ~~P~f~H~pl---i~~~-~g-~KLSKR  244 (445)
T PRK12558        223 KPPVFAHLSL---LTGA-DG-KGLSKR  244 (445)
T ss_pred             CCCeEEEccc---ccCC-Cc-cccccc
Confidence            6798888887   7775 67 699995

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=98.61  E-value=1.6e-07  Score=86.43  Aligned_cols=157  Identities=21%  Similarity=0.170  Sum_probs=101.5

Q ss_pred             EeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHH---HHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084           83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ---QLSKATRETAAIYLACGIDNSKASVFVQS  158 (287)
Q Consensus        83 tGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~---~i~~~~~~~i~~~lA~GiDp~kt~i~~qS  158 (287)
                      .|-.|||.+||||+..++.+|+.-+. +..+++=|-|.       |++   ...+....+.+++.++|++||  +.++||
T Consensus         6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt-------D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS   76 (240)
T cd09287           6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT-------DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIAS   76 (240)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC-------CCCcccchHHHHHHHHHHHHHcCCCCC--Cccchh
Confidence            45678899999999999988865554 44555557776       332   345566779999999999999  579999


Q ss_pred             chh-hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHH---hhhhhhcCCCEEEeeccchHHHHHHH
Q 023084          159 HVR-AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTR  234 (287)
Q Consensus       159 ~~~-~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQ---aADIl~~~adlvpvG~DQ~~hi~LaR  234 (287)
                      +.. .+.+..-.|-        ++-..|.  ..+.+ +.    ...||..+   +.|=...+.++|.-|.|-..+-..-.
T Consensus        77 ~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~  141 (240)
T cd09287          77 DRIELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQR  141 (240)
T ss_pred             ccHHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHH
Confidence            853 3333221111        0111111  01111 11    12344444   33334468999999999999888888


Q ss_pred             HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      -+.+.++                  ++.|...+.|.   |..  +| +||||.
T Consensus       142 ~l~~~Lg------------------~~~P~~~H~pl---l~~--~~-~kLSKR  170 (240)
T cd09287         142 YIYEYFG------------------WEYPETIHWGR---LKI--EG-GKLSTS  170 (240)
T ss_pred             HHHHHcC------------------CCCCcEEeeee---ecC--CC-Ceeccc
Confidence            8888875                  56788887775   543  56 799995

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=98.54  E-value=5e-07  Score=83.10  Aligned_cols=132  Identities=13%  Similarity=0.053  Sum_probs=84.7

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-  162 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-  162 (287)
                      .|||.|||||...++.+|..-+. +.+.++-|-|.       |+ ....+..+.+.+++.++||++|  ++++||+..+ 
T Consensus         9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~   79 (238)
T cd00807           9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-------NPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ   79 (238)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence            57899999999999988876555 55666667776       43 3455677789999999999999  5799999533 


Q ss_pred             hhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHH
Q 023084          163 HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAER  239 (287)
Q Consensus       163 ~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r  239 (287)
                      |.+..-.|-.        +-..|...  +.+ +.    ..+||..|   +.|=...+.+.|.-|.|...+-..-.-+.+.
T Consensus        80 Y~~~~~~L~~--------~g~aY~~~--~~~-~~----~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a  144 (238)
T cd00807          80 LYEYAEQLIK--------KGKAYVHH--RTG-DK----WCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDA  144 (238)
T ss_pred             HHHHHHHHHH--------cCCeecCC--CCC-CC----EEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHH
Confidence            3222111110        00001100  001 11    12244444   3444457899999999998887777778887


Q ss_pred             Hh
Q 023084          240 VN  241 (287)
Q Consensus       240 ~n  241 (287)
                      ++
T Consensus       145 Lg  146 (238)
T cd00807         145 LR  146 (238)
T ss_pred             cC
Confidence            76

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=98.50  E-value=1.1e-06  Score=89.75  Aligned_cols=180  Identities=17%  Similarity=0.135  Sum_probs=113.4

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      +.+...+=.|||.+||||+..++.+|..-+. +..+++-|-|.    ++.......+....+.+++.++|++|+.  +++
T Consensus       101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD~--~~~  174 (567)
T PRK04156        101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWDE--VVI  174 (567)
T ss_pred             eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCCC--ccC
Confidence            3566777778899999999999988865554 55556566665    3311223455667889999999999984  799


Q ss_pred             ccchhh-hhHHHHH-------HhccCCHHHHhchhc------------------HHHHHh----------hhCCC----C
Q 023084          157 QSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSH----------KAGGE----N  196 (287)
Q Consensus       157 qS~~~~-~~el~w~-------L~~~~t~~~L~R~~~------------------~k~~~~----------~~~~~----~  196 (287)
                      ||+..+ +.+..-.       +.|.++-.++++...                  |+++..          +...+    +
T Consensus       175 qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n  254 (567)
T PRK04156        175 QSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPN  254 (567)
T ss_pred             cccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCC
Confidence            999643 2221111       667888776643210                  111100          00000    0


Q ss_pred             cc------------------chhhhchHHHhh---hhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCC
Q 023084          197 VG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR  255 (287)
Q Consensus       197 i~------------------~g~~~YPvLQaA---DIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~  255 (287)
                      .+                  -+-..||.++=|   |-...+.+++.-|.|...+-..-..+.+.|+              
T Consensus       255 ~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg--------------  320 (567)
T PRK04156        255 PSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG--------------  320 (567)
T ss_pred             CCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------------
Confidence            00                  011235655433   3334589999999999999888888888876              


Q ss_pred             CCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          256 GGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       256 ~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                          +..|...+.+.   |. + +|+ |||||
T Consensus       321 ----~~~P~~~H~~~---L~-~-~g~-kLSKR  342 (567)
T PRK04156        321 ----WEYPETIHYGR---LK-I-EGF-VLSTS  342 (567)
T ss_pred             ----CCCceEEEcce---ec-C-CCc-eeecc
Confidence                45688888775   54 4 674 99997

>PLN02907 glutamate-tRNA ligase

Probab=98.37  E-value=1.9e-06  Score=90.32  Aligned_cols=154  Identities=15%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             eEEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        80 ~iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      .+.+=|-  |||.|||||...++.+|..-+. |.++++-|-|.    ++.  ....+....+.+++.++|+++|+  +++
T Consensus       213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT----dp~--r~~~e~~~~I~~dl~wLG~~~d~--~~~  284 (722)
T PLN02907        213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT----NPS--KESDEFVENILKDIETLGIKYDA--VTY  284 (722)
T ss_pred             ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--cCChHHHHHHHHHHHHcCCCCCC--ccc
Confidence            4556565  5599999999999988865555 55555556554    321  23456778889999999999995  689


Q ss_pred             ccchhh-hhHHHHH-------HhccCCHHHHhchh-----------c-------HHHHHhh-h-C------------CCC
Q 023084          157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-A-G------------GEN  196 (287)
Q Consensus       157 qS~~~~-~~el~w~-------L~~~~t~~~L~R~~-----------~-------~k~~~~~-~-~------------~~~  196 (287)
                      ||+..+ +.+.+-.       +.|.++..+++...           +       |++|..- + +            ..+
T Consensus       285 qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n  364 (722)
T PLN02907        285 TSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPN  364 (722)
T ss_pred             ccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCC
Confidence            999643 2222211       55788877664221           1       1111100 0 0            000


Q ss_pred             ccchhh------------------hchHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084          197 VGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVN  241 (287)
Q Consensus       197 i~~g~~------------------~YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n  241 (287)
                      .++.-+                  .||..+=|-.+-   .+.+++.-|.|...+-..-.-+.+.++
T Consensus       365 ~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg  430 (722)
T PLN02907        365 KSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG  430 (722)
T ss_pred             CCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC
Confidence            111111                  155555443332   478999999999998888888888775

>PLN02859 glutamine-tRNA ligase

Probab=98.35  E-value=1.5e-06  Score=91.17  Aligned_cols=175  Identities=10%  Similarity=0.043  Sum_probs=107.2

Q ss_pred             EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      |.+=|  +|||.|||||...++.+|..-+. |..+++-|-|.    ++.  ....+....+.+++.++|++|++  +++|
T Consensus       265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT----dp~--r~~~e~~~~I~edL~WLG~~~d~--~~~q  336 (788)
T PLN02859        265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT----NPE--AEKKEYIDHIEEIVEWMGWEPFK--ITYT  336 (788)
T ss_pred             eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--ccchHHHHHHHHHHHHcCCCCCC--cccc
Confidence            44444  56699999999999888866555 55555555554    321  24556778889999999999985  6899


Q ss_pred             cchh-hhhHHHHH-------HhccCCHHHHhchhc------------------HHHHHhh-hC-------------CCCc
Q 023084          158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-AG-------------GENV  197 (287)
Q Consensus       158 S~~~-~~~el~w~-------L~~~~t~~~L~R~~~------------------~k~~~~~-~~-------------~~~i  197 (287)
                      |++. .+.+.+-.       +.|.++-.+++..-.                  |.+|... +.             ..+.
T Consensus       337 Sd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~  416 (788)
T PLN02859        337 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNF  416 (788)
T ss_pred             cHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCc
Confidence            9975 23232221       568888877643211                  2222110 00             0000


Q ss_pred             ------------cc------hhhhchHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 023084          198 ------------GV------ALLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG  256 (287)
Q Consensus       198 ------------~~------g~~~YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~  256 (287)
                                  ..      -..+||..-=|-.+.   .+.++++.|.|...+-..-.-+.+.|+               
T Consensus       417 ~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg---------------  481 (788)
T PLN02859        417 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG---------------  481 (788)
T ss_pred             eeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC---------------
Confidence                        00      012355543333322   479999999998888777777777775               


Q ss_pred             CcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          257 GAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       257 ~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                         +..|...+.+    ..++ +|+ ||||+
T Consensus       482 ---~~~P~~~~f~----rLn~-~~t-~LSKR  503 (788)
T PLN02859        482 ---LYQPYVWEYS----RLNV-TNT-VMSKR  503 (788)
T ss_pred             ---CCCCcEEeee----eECC-CCC-cccCc
Confidence               4567666554    3466 674 99995

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=98.02  E-value=5.3e-05  Score=67.90  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee-cCC-----CCHHH-HHHHHHHHHHHHHHcCCCC
Q 023084           82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI-TLP-----YDTQQ-LSKATRETAAIYLACGIDN  149 (287)
Q Consensus        82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~-t~~-----~d~~~-i~~~~~~~i~~~lA~GiDp  149 (287)
                      |++=-|+|++||||+.+.+  .-+.++.+  |++|++. ..|.|.. +..     ..+.+ .......+.+++.++|+.+
T Consensus         6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~   85 (212)
T cd00671           6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF   85 (212)
T ss_pred             ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence            5666789999999998754  33344444  8887543 3333311 110     01222 2234456778888999987


Q ss_pred             CceEEEEccchhhhhHHHHH-Hhc--cCC--HHHH-hchhcHHHHHhhhCCCCc---cchhhhchH---HHhhhhhhcCC
Q 023084          150 SKASVFVQSHVRAHVELMWL-LSS--ATP--IGWL-NKMIQFKEKSHKAGGENV---GVALLTYPV---LMASDILLYQS  217 (287)
Q Consensus       150 ~kt~i~~qS~~~~~~el~w~-L~~--~~t--~~~L-~R~~~~k~~~~~~~~~~i---~~g~~~YPv---LQaADIl~~~a  217 (287)
                      +  .++..|+........|. |..  ...  -+.+ -....|+.    . ++-+   +=|..+|..   --+.|=+.+++
T Consensus        86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~----~-~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~  158 (212)
T cd00671          86 D--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD----D-KDRVLVRSDGTYTYFTRDIAYHLDKFERGA  158 (212)
T ss_pred             c--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC----C-CCeEEEECCCCccchHHHHHHHHHHHhcCC
Confidence            5  34555654222222222 110  000  0000 00000100    0 0000   225566752   22222223578


Q ss_pred             CEE--EeeccchHHHHHHHHHHHHHh
Q 023084          218 DFV--PVGEDQKQHLELTRELAERVN  241 (287)
Q Consensus       218 dlv--pvG~DQ~~hi~LaRdla~r~n  241 (287)
                      |.+  .+|.||..|+.--+.+++.++
T Consensus       159 ~~~i~v~g~~~~~~~~~~~~~~~~lg  184 (212)
T cd00671         159 DKIIYVVGADHHGHFKRLFAALELLG  184 (212)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHcC
Confidence            888  999999999999999999987

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=97.92  E-value=2.8e-05  Score=79.14  Aligned_cols=94  Identities=14%  Similarity=0.041  Sum_probs=64.3

Q ss_pred             EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      +.+=|  .|||.|||||+..++.+|..-+. +..+++-|-|.    ++.  ....+..+.+.+++.++||+||. .+++|
T Consensus        30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT----d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~q  102 (554)
T PRK05347         30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT----NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYA  102 (554)
T ss_pred             eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC----CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceee
Confidence            44445  45699999999999988866555 55555555554    321  24556778889999999999953 47899


Q ss_pred             cchhh-hhHHHHH-------HhccCCHHHHhc
Q 023084          158 SHVRA-HVELMWL-------LSSATPIGWLNK  181 (287)
Q Consensus       158 S~~~~-~~el~w~-------L~~~~t~~~L~R  181 (287)
                      |+..+ +.+.+..       +.|.+|-.++++
T Consensus       103 S~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~  134 (554)
T PRK05347        103 SDYFDQLYEYAVELIKKGKAYVDDLSAEEIRE  134 (554)
T ss_pred             ecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHH
Confidence            98643 3333332       568888877643

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=97.92  E-value=4.3e-05  Score=60.89  Aligned_cols=56  Identities=16%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             EEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHH
Q 023084           81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA  140 (287)
Q Consensus        81 iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~  140 (287)
                      +++|-.+ +.+|+||+.. ++.+.++++  .+++.++|.++...+.++..++++.+...+
T Consensus         2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~   57 (105)
T cd02156           2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEE   57 (105)
T ss_pred             EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence            5667777 8999999987 678877764  689999999988765555555555544443

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=97.89  E-value=4.2e-05  Score=77.55  Aligned_cols=80  Identities=21%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHH--HHHH-hc-cCcE-EEEEecce---------------eecC-C----CCH----
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIAL-QN-SYET-LFFIVDLH---------------AITL-P----YDT----  128 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~--~~~L-Q~-g~~~-~ilIaD~h---------------A~t~-~----~d~----  128 (287)
                      +..+=||+-|||.+||||+...+..  +.+. .. |.++ +|+..|.|               .+++ |    .||    
T Consensus        19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~   98 (515)
T TIGR00467        19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK   98 (515)
T ss_pred             eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence            6789999999999999998876522  3333 33 7776 67799998               1112 1    122    


Q ss_pred             -HHHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084          129 -QQLSKATRETAAIYLACGIDNSKASVFVQSHV  160 (287)
Q Consensus       129 -~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~  160 (287)
                       .-...+-....+.+..+||+   .+|+.+++.
T Consensus        99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~  128 (515)
T TIGR00467        99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQ  128 (515)
T ss_pred             HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHh
Confidence             22333445566667778996   578888874

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=97.88  E-value=3.8e-05  Score=77.88  Aligned_cols=90  Identities=10%  Similarity=-0.025  Sum_probs=62.3

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~  163 (287)
                      .|||.|||||+..++.+|..-+. +..+++-|-|.    ++.  ....+..+.+.+++.++|+++|. .+++||+..+ +
T Consensus         8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT----d~~--r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~   80 (522)
T TIGR00440         8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT----NPV--KEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDEL   80 (522)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC----Ccc--cCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHH
Confidence            58899999999999988876555 55555556554    321  34556788899999999999953 3688998643 3


Q ss_pred             hHHHHH-------HhccCCHHHHhch
Q 023084          164 VELMWL-------LSSATPIGWLNKM  182 (287)
Q Consensus       164 ~el~w~-------L~~~~t~~~L~R~  182 (287)
                      .+.+-.       +.|.+|-.++++.
T Consensus        81 ~~~a~~Li~~G~AY~c~cs~eel~~~  106 (522)
T TIGR00440        81 YRYAEELIKKGLAYVDELTPEEIREY  106 (522)
T ss_pred             HHHHHHHHHcCCEEeecCCHHHHHHh
Confidence            222211       6688888776543

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=97.84  E-value=3.4e-05  Score=78.71  Aligned_cols=92  Identities=12%  Similarity=0.015  Sum_probs=64.2

Q ss_pred             EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      +.+=|  .|||.|||||+..++.+|..-+. |..+++-|-|.       |+ ....+....+.+++.++||++++  +++
T Consensus        52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-------Dp~r~~~e~~~~I~~dL~wLGi~~D~--~~~  122 (574)
T PTZ00437         52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-------NPETEEQVYIDAIMEMVKWMGWKPDW--VTF  122 (574)
T ss_pred             EEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC--CCc
Confidence            44445  55699999999999988866555 55566556665       33 24556778899999999999985  578


Q ss_pred             ccchhh-hhHHHHH-------HhccCCHHHHhc
Q 023084          157 QSHVRA-HVELMWL-------LSSATPIGWLNK  181 (287)
Q Consensus       157 qS~~~~-~~el~w~-------L~~~~t~~~L~R  181 (287)
                      ||++.+ +.+.+-.       +.|.+|-.++++
T Consensus       123 qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~  155 (574)
T PTZ00437        123 SSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ  155 (574)
T ss_pred             CchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence            998644 2222222       568888887653

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=97.84  E-value=4.6e-05  Score=73.94  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=43.0

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeecC--CC-------------------CHH
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY-------------------DTQ  129 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~---~~~LQ~-g~~~-~ilIaD~hA~t~--~~-------------------d~~  129 (287)
                      .....+-+|+.|||.+||||+--++..   ...|++ |.++ +|+.+|+.--+.  |.                   ||.
T Consensus        22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~  101 (360)
T PF01921_consen   22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF  101 (360)
T ss_dssp             -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred             CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence            346789999999999999998765522   234666 7765 667888643322  10                   221


Q ss_pred             -----HHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084          130 -----QLSKATRETAAIYLACGIDNSKASVFVQSHV  160 (287)
Q Consensus       130 -----~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~  160 (287)
                           -.+.+-....+.+-.+||++   +|+.|++.
T Consensus       102 G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~  134 (360)
T PF01921_consen  102 GCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEM  134 (360)
T ss_dssp             SSSSCHHHHHHHHHHHHHHTTT------EEEECCCC
T ss_pred             CCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHh
Confidence                 13334445555666789964   78888874

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=97.84  E-value=4.5e-05  Score=80.46  Aligned_cols=96  Identities=14%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             eEEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        80 ~iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      .+.+=|-  |||.|||||...++.+|..-+. +..+++-|-|.    ++.  ....+....+.+++.++|++++. .+++
T Consensus        31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT----d~~--r~~~e~~~~I~~dl~wLG~~wd~-~~~~  103 (771)
T PRK14703         31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT----NPE--TEDTEYVEAIKDDVRWLGFDWGE-HLYY  103 (771)
T ss_pred             ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC----CCC--cCChHHHHHHHHHHHHcCCCCCC-CceE
Confidence            3555554  5699999999999988866555 55555555554    321  24556778899999999999875 3789


Q ss_pred             ccchhh-h---hHHHH----HHhccCCHHHHhch
Q 023084          157 QSHVRA-H---VELMW----LLSSATPIGWLNKM  182 (287)
Q Consensus       157 qS~~~~-~---~el~w----~L~~~~t~~~L~R~  182 (287)
                      ||+..+ |   .+...    -+.|.+|-.++++.
T Consensus       104 qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~  137 (771)
T PRK14703        104 ASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL  137 (771)
T ss_pred             eecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence            999643 2   22111    16788887776433

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=97.78  E-value=6.1e-05  Score=76.96  Aligned_cols=93  Identities=17%  Similarity=0.122  Sum_probs=63.9

Q ss_pred             eEEEeecC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           80 RIVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        80 ~iytGi~P--TG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      .+.+=|-|  ||.|||||+..++.+|..-+. +..+++-|-|.    ++.  ....+....+.+++.++|++|+.  +++
T Consensus        93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT----Dp~--R~~~e~~~~I~edL~wLGi~~d~--~~~  164 (560)
T TIGR00463        93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT----DPR--RVKPEAYDMILEDLDWLGVKGDE--VVY  164 (560)
T ss_pred             eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC----Ccc--cccHHHHHHHHHHHHHcCCCCCc--ccc
Confidence            45666655  599999999999888865554 54555556554    321  34456778889999999999984  789


Q ss_pred             ccchhh-hhHHHHH-------HhccCCHHHHh
Q 023084          157 QSHVRA-HVELMWL-------LSSATPIGWLN  180 (287)
Q Consensus       157 qS~~~~-~~el~w~-------L~~~~t~~~L~  180 (287)
                      ||+..+ +.+..-.       +.|.+|-.+++
T Consensus       165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~  196 (560)
T TIGR00463       165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR  196 (560)
T ss_pred             ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence            999643 2222211       66888888775

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=97.75  E-value=0.00041  Score=69.36  Aligned_cols=75  Identities=8%  Similarity=-0.007  Sum_probs=48.3

Q ss_pred             CCCceEE-EeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-cC------CCCHHH-HHHHHHHHHHH
Q 023084           76 SVKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-TL------PYDTQQ-LSKATRETAAI  141 (287)
Q Consensus        76 ~~~~~iy-tGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~-t~------~~d~~~-i~~~~~~~i~~  141 (287)
                      +..+.+| +|--|.|.+||||..+.+  .-+.++++  |++|++..+ |.|.- +.      ..++.+ .+++...+.++
T Consensus        21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~  100 (463)
T PRK00260         21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED  100 (463)
T ss_pred             CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3455666 888888999999987754  23444444  899988755 44311 10      013333 44567788899


Q ss_pred             HHHcCC-CCC
Q 023084          142 YLACGI-DNS  150 (287)
Q Consensus       142 ~lA~Gi-Dp~  150 (287)
                      +.++|| .|+
T Consensus       101 ~~~Lgi~~~d  110 (463)
T PRK00260        101 MDALNVLPPD  110 (463)
T ss_pred             HHHcCCCCCC
Confidence            999999 454

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.0015  Score=65.93  Aligned_cols=81  Identities=22%  Similarity=0.377  Sum_probs=52.5

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeecC--CC---CHHHHHHH------------
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------  134 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~---~~~LQ~-g~~~-~ilIaD~hA~t~--~~---d~~~i~~~------------  134 (287)
                      ...++=||+-|||.+||||+.=.+..   ...|.+ |+++ +|+++|.+-=+.  |.   +++...++            
T Consensus        19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~   98 (521)
T COG1384          19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF   98 (521)
T ss_pred             CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence            56789999999999999998643311   233444 7776 778999976554  21   23333332            


Q ss_pred             ------HH----HHHHHHHHcCCCCCceEEEEccch
Q 023084          135 ------TR----ETAAIYLACGIDNSKASVFVQSHV  160 (287)
Q Consensus       135 ------~~----~~i~~~lA~GiDp~kt~i~~qS~~  160 (287)
                            ++    ...+.+--+||+   ++++.+|+.
T Consensus        99 G~~~Sya~hf~~~f~~~l~~~Gi~---~E~~s~se~  131 (521)
T COG1384          99 GCCDSYAEHFLRPFEEFLDEFGIE---VEFVSATEL  131 (521)
T ss_pred             cccchHHHHHHHHHHHHHHhcCCc---eEEEEhHHh
Confidence                  23    344445567987   468888874

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=97.31  E-value=0.0041  Score=58.65  Aligned_cols=64  Identities=25%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             CCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecceeecCC------C--------------CH-HHHHHHHHHHHH
Q 023084           87 PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITLP------Y--------------DT-QQLSKATRETAA  140 (287)
Q Consensus        87 PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~i-lIaD~hA~t~~------~--------------d~-~~i~~~~~~~i~  140 (287)
                      |+|.+||||+.+.+.  -+.++++  |++|.+ .-.|.|..-..      .              ++ +-++++..++.+
T Consensus        11 ~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (312)
T cd00668          11 ANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKE   90 (312)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999987431  1233333  788744 44566654210      0              11 223344556777


Q ss_pred             HHHHcCCCCC
Q 023084          141 IYLACGIDNS  150 (287)
Q Consensus       141 ~~lA~GiDp~  150 (287)
                      ++.++|++.+
T Consensus        91 ~l~~lgI~~D  100 (312)
T cd00668          91 DFRRLGISYD  100 (312)
T ss_pred             HHHHhCcccc
Confidence            8889998654

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=97.29  E-value=0.0015  Score=65.90  Aligned_cols=153  Identities=15%  Similarity=0.169  Sum_probs=79.4

Q ss_pred             eEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecceeecCC------CCHHH-HHHHHHHHHHHHHHcC
Q 023084           80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDLHAITLP------YDTQQ-LSKATRETAAIYLACG  146 (287)
Q Consensus        80 ~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i--lIaD~hA~t~~------~d~~~-i~~~~~~~i~~~lA~G  146 (287)
                      .-|+|--|+|++||||..+++  .-+.++.+  |++|..  -+.|+-..+..      ..++. .......+.++|..+|
T Consensus       115 Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~Lg  194 (507)
T PRK01611        115 VEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLG  194 (507)
T ss_pred             EEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            335688899999999998765  23444433  888744  46666322210      01222 2334567888899999


Q ss_pred             CCCCceEEEEccchh--hhhHHHHH-Hh-c-cCC-HHHHhchhcHHHHHhhhCCC-C----ccchhhhchHHHhhhhhhc
Q 023084          147 IDNSKASVFVQSHVR--AHVELMWL-LS-S-ATP-IGWLNKMIQFKEKSHKAGGE-N----VGVALLTYPVLMASDILLY  215 (287)
Q Consensus       147 iDp~kt~i~~qS~~~--~~~el~w~-L~-~-~~t-~~~L~R~~~~k~~~~~~~~~-~----i~~g~~~YPvLQaADIl~~  215 (287)
                      +.+|  .+++.|+..  +..+..+. |- . ... ..  ....-|+  ...++++ .    -+=|..+|-.   .||-++
T Consensus       195 I~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~--~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~t---~Dia~~  265 (507)
T PRK01611        195 VHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVES--DGALWVR--LTEFGDDKDRVLIKSDGTYTYFT---RDIAYH  265 (507)
T ss_pred             Ceee--EEeecCcchhcchHHHHHHHHHHCCCEEEee--CCcEEEE--chhhCCCCCeEEEECCCCccchH---HHHHHH
Confidence            9875  345555431  11111111 11 0 000 00  0000000  0011100 0    0224456633   355332


Q ss_pred             -------CCCEEEeeccchHHHHHHHHHHHHHh
Q 023084          216 -------QSDFVPVGEDQKQHLELTRELAERVN  241 (287)
Q Consensus       216 -------~adlvpvG~DQ~~hi~LaRdla~r~n  241 (287)
                             +--+-.+|.||..|+.--..+++.++
T Consensus       266 ~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg  298 (507)
T PRK01611        266 LYKFERFDRVIYVVGADHHGHFKRLKAALKALG  298 (507)
T ss_pred             HHHHhhcCEEEEEECCChHHHHHHHHHHHHHcC
Confidence                   34445999999999999999999887

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=97.05  E-value=0.015  Score=52.56  Aligned_cols=71  Identities=11%  Similarity=-0.022  Sum_probs=42.8

Q ss_pred             ceEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYLAC  145 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~i~~~lA~  145 (287)
                      ....+|-=|-|.+||||....+  .-+.++++  |++|++..+ |.|..=.       ..++ +-.+++...+.+++.++
T Consensus        22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l  101 (213)
T cd00672          22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL  101 (213)
T ss_pred             eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            3444566666999999977654  22344444  788876643 4442210       0244 33455677788888889


Q ss_pred             CCCC
Q 023084          146 GIDN  149 (287)
Q Consensus       146 GiDp  149 (287)
                      ||.+
T Consensus       102 ~i~~  105 (213)
T cd00672         102 NVLP  105 (213)
T ss_pred             CCCC
Confidence            9876

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]

Probab=96.44  E-value=0.0053  Score=60.99  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEE--
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASV--  154 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i--  154 (287)
                      +|+=.-=-|||.+|||-+..++.|++...+ |.+++.-|.|-       |. ..+....+.+.+++.++||+||..-.  
T Consensus        34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-------Dq~R~v~gs~e~i~~~L~w~nl~~DEgP~~g  106 (524)
T KOG1149|consen   34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-------DQKRLIRGSEEAIYEDLKWANLDWDEGPGVG  106 (524)
T ss_pred             eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-------cccccccchHHHHHHHHHhcCCCcccCCCcC
Confidence            344444456799999999999988876666 66777667775       22 33555666778889999999987543  


Q ss_pred             -----EEccchhhh----hHHHHH----HhccCCHHHHhch
Q 023084          155 -----FVQSHVRAH----VELMWL----LSSATPIGWLNKM  182 (287)
Q Consensus       155 -----~~qS~~~~~----~el~w~----L~~~~t~~~L~R~  182 (287)
                           |.||+..+.    .+....    +-|+|+-.||..+
T Consensus       107 G~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~l  147 (524)
T KOG1149|consen  107 GPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLL  147 (524)
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHH
Confidence                 688885432    221111    5588888876543

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=95.32  E-value=0.057  Score=56.52  Aligned_cols=74  Identities=22%  Similarity=0.361  Sum_probs=49.9

Q ss_pred             CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecce-eecC-------CCCHH-HHHHHHHHHHHHHH
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLH-AITL-------PYDTQ-QLSKATRETAAIYL  143 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~h-A~t~-------~~d~~-~i~~~~~~~i~~~l  143 (287)
                      +..|-+++ -|+|.+||||..+.+  .-+.++++  |++|+++.++++ ..-.       ..++. ..+++...+.+++.
T Consensus         3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~   82 (673)
T PRK00133          3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA   82 (673)
T ss_pred             CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            45677777 689999999988755  22344444  889887766543 2211       02443 45567788899999


Q ss_pred             HcCCCCCc
Q 023084          144 ACGIDNSK  151 (287)
Q Consensus       144 A~GiDp~k  151 (287)
                      ++|++++.
T Consensus        83 ~l~i~~d~   90 (673)
T PRK00133         83 GFGISFDN   90 (673)
T ss_pred             HhCCCCCC
Confidence            99998873

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=95.21  E-value=0.063  Score=55.27  Aligned_cols=66  Identities=23%  Similarity=0.384  Sum_probs=47.1

Q ss_pred             cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084           86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~~-~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      -|.|.+||||....|  .-|.++|+  |++++++- .|-|..-.       ..+|+ -+.++.++..++|.+++|+-|.
T Consensus        15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD~   93 (558)
T COG0143          15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFDN   93 (558)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            467999999988766  34677777  89987764 45554422       12564 4566778899999999998763

>PLN02224 methionine-tRNA ligase

Probab=94.33  E-value=0.25  Score=51.56  Aligned_cols=74  Identities=12%  Similarity=0.158  Sum_probs=49.5

Q ss_pred             CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeec--C----C-CCH-HHHHHHHHHHHHHHH
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAIT--L----P-YDT-QQLSKATRETAAIYL  143 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t--~----~-~d~-~~i~~~~~~~i~~~l  143 (287)
                      ++.|-+++ -|+|.+||||..+.+  .-+.++++  |++|++. =.|.|..-  .    . .++ +.+++++..+.+.+.
T Consensus        70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~  149 (616)
T PLN02224         70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK  149 (616)
T ss_pred             eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            35566666 678999999988755  22444544  8888665 55667521  1    0 133 556667778888999


Q ss_pred             HcCCCCCc
Q 023084          144 ACGIDNSK  151 (287)
Q Consensus       144 A~GiDp~k  151 (287)
                      ++||++|.
T Consensus       150 ~l~I~~D~  157 (616)
T PLN02224        150 DLDIAYDK  157 (616)
T ss_pred             HcCCCCCc
Confidence            99999883

>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=94.24  E-value=0.18  Score=51.65  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             eEEEee--cCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        80 ~iytGi--~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      .|.+-|  ||||.+||||.-.++.++..-|....-+|.--|+   |||.  .+-.+-..-+.+++--+||.|++  +=+-
T Consensus       200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDD---TNPa--KE~~eFe~~IleDl~~LgIkpd~--~TyT  272 (712)
T KOG1147|consen  200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDD---TNPA--KENEEFEDVILEDLSLLGIKPDR--VTYT  272 (712)
T ss_pred             ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecC---CCcc--hhhHHHHHHHHHHHHHhCcCcce--eeec
Confidence            444444  7789999999998887775445433345555566   3432  12233344567777788999996  4456


Q ss_pred             cchh
Q 023084          158 SHVR  161 (287)
Q Consensus       158 S~~~  161 (287)
                      ||+.
T Consensus       273 SDyF  276 (712)
T KOG1147|consen  273 SDYF  276 (712)
T ss_pred             hhhH
Confidence            7653

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=94.03  E-value=0.16  Score=49.84  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=39.8

Q ss_pred             cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecCC-------CCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084           86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~~-------~d~~-~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      -|.|.+||||..+.+  .-+.++++  |++++++ =.|.|..-..       .+|+ -+.++...+.+.+.++||+.|.
T Consensus         9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~   87 (391)
T PF09334_consen    9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR   87 (391)
T ss_dssp             ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred             CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            477999999987654  22334443  8887554 6788866431       3564 4556778889999999999884

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=93.46  E-value=0.55  Score=47.78  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             CCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--EecceeecC---C-------------CC
Q 023084           72 ASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL---P-------------YD  127 (287)
Q Consensus        72 ~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~hA~t~---~-------------~d  127 (287)
                      .|..+..+++|+ ..||  +.+||||+.+.+  .-+.++.+  |++|++.  |+|.=-++.   .             .+
T Consensus        17 ~p~~~~~v~mYv-CGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~   95 (490)
T PRK14536         17 QPIEHGHVRLYG-CGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKS   95 (490)
T ss_pred             ccCCCCceEEEe-eCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCC
Confidence            344445677776 5677  889999988755  22344433  8888766  677611111   1             13


Q ss_pred             H-HHHHHHHHHHHHHHHHcCCCCC
Q 023084          128 T-QQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus       128 ~-~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      + +-.+++...+.+++.++|+.+.
T Consensus        96 ~~e~a~~~~~~f~~d~~~Lni~~~  119 (490)
T PRK14536         96 VLEIAAHYTAAFFRDTARLNIERP  119 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3 3344456678888889998754

>PLN02610 probable methionyl-tRNA synthetase

Probab=92.86  E-value=0.54  Score=50.51  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-cceeecCC-------CCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084           87 PTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        87 PTG~lHLGh~vg-~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~~-------~d~~-~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      |+|.+||||..+ .+  .-+.++++  |++++++.+ |-|..-..       .+|+ -+.++...+.+.|.++||+.|.
T Consensus        28 ~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D~  106 (801)
T PLN02610         28 VNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDK  106 (801)
T ss_pred             CCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccc
Confidence            559999999885 34  33556665  889877755 44654321       2453 3555667788889999999884

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=92.77  E-value=0.32  Score=49.52  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=46.0

Q ss_pred             eEEEeecCC--CcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 023084           80 RIVSGVQPT--GSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL  143 (287)
Q Consensus        80 ~iytGi~PT--G~lHLGh~vg~-i--~~~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~-~~i~~~~~~~i~~~l  143 (287)
                      .+.+.-=|+  |.+||||..+. +  .-+.++++  |++|++.. .|.|..-.       ..++ +-.++++..+.+++.
T Consensus         5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~   84 (556)
T PRK12268          5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK   84 (556)
T ss_pred             EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            444555566  99999998865 3  22333433  88887764 45553321       0244 334667888899999


Q ss_pred             HcCCCCCc
Q 023084          144 ACGIDNSK  151 (287)
Q Consensus       144 A~GiDp~k  151 (287)
                      ++|++++.
T Consensus        85 ~l~i~~d~   92 (556)
T PRK12268         85 KLGISYDL   92 (556)
T ss_pred             HcCCcCCC
Confidence            99999874

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=92.53  E-value=0.29  Score=46.41  Aligned_cols=80  Identities=13%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeecCC-------CCHHH-HHHHHHHHHHHHHHcCCCCCceE
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITLP-------YDTQQ-LSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i-lIaD~hA~t~~-------~d~~~-i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      |+|.+||||..+.+  .-+.++++  |++|.+ .-.|.|..-..       .++.+ .+++..++.+++.++|+.++- .
T Consensus        11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~-~   89 (314)
T cd00812          11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDW-R   89 (314)
T ss_pred             CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceec-c
Confidence            57999999988755  22333433  888755 45555532110       13333 445667788889999997762 2


Q ss_pred             EEEccchhhhhHHH
Q 023084          154 VFVQSHVRAHVELM  167 (287)
Q Consensus       154 i~~qS~~~~~~el~  167 (287)
                      .+.....+++.+..
T Consensus        90 ~~~~t~~~~~~~~v  103 (314)
T cd00812          90 REFTTCDPEYYKFT  103 (314)
T ss_pred             cccccCCHHHHHHH
Confidence            23333344444433

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=92.52  E-value=0.56  Score=50.29  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=47.9

Q ss_pred             CceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC------C-CCH-HHHHHHHHHHHHHH
Q 023084           78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL------P-YDT-QQLSKATRETAAIY  142 (287)
Q Consensus        78 ~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~------~-~d~-~~i~~~~~~~i~~~  142 (287)
                      ++.+.+|+ |+  |.+|+||..+.+  .-+.++|.  |++|.+..+ |.|.+-.      . .++ +-..++..++.+++
T Consensus        33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~  111 (805)
T PRK00390         33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL  111 (805)
T ss_pred             CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            57788886 77  999999988754  22455555  888877655 4444321      0 133 34556778888999


Q ss_pred             HHcCCCCC
Q 023084          143 LACGIDNS  150 (287)
Q Consensus       143 lA~GiDp~  150 (287)
                      .++|+..|
T Consensus       112 ~~lGi~~D  119 (805)
T PRK00390        112 KSLGFSYD  119 (805)
T ss_pred             HHhCCccc
Confidence            99998443

>TIGR00398 metG methionyl-tRNA synthetase

Probab=91.72  E-value=0.33  Score=49.15  Aligned_cols=65  Identities=22%  Similarity=0.326  Sum_probs=40.8

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCc
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~~~-i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      |+|.+||||..+.+  .-+.++++  |++|.+.. .|.|..-.       ..++.+ .+++...+.+++.++|+++|.
T Consensus        10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~   87 (530)
T TIGR00398        10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR   87 (530)
T ss_pred             CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            78999999988654  22344444  88886654 44442211       024443 344567888899999998763

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=91.56  E-value=0.58  Score=44.91  Aligned_cols=36  Identities=22%  Similarity=0.178  Sum_probs=23.1

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI  122 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~  122 (287)
                      |+|.+||||+.+.+  .-+.++++  |++|.+. =.|.|.+
T Consensus        12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~   52 (338)
T cd00818          12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL   52 (338)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence            46999999998754  22344444  8888654 4555544

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=90.98  E-value=0.94  Score=45.35  Aligned_cols=71  Identities=14%  Similarity=0.302  Sum_probs=43.2

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCceE
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      |+|.+||||..+.+  .-+.+.++  |+++.+. =.|.|..-.       ..++ +..+.+..++.+++.++||+++.  
T Consensus        12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~--   89 (511)
T PRK11893         12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD--   89 (511)
T ss_pred             CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC--
Confidence            45999999987654  22344444  8888665 445543211       0133 33455667888899999998874  


Q ss_pred             EEEccc
Q 023084          154 VFVQSH  159 (287)
Q Consensus       154 i~~qS~  159 (287)
                      ++..++
T Consensus        90 ~~~t~~   95 (511)
T PRK11893         90 FIRTTD   95 (511)
T ss_pred             ceeCCC
Confidence            344444

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=90.54  E-value=0.52  Score=44.72  Aligned_cols=65  Identities=22%  Similarity=0.299  Sum_probs=41.0

Q ss_pred             CCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCc
Q 023084           87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        87 PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      |+|.+||||..+.+..  +.++++  |++|.+. =.|.|..-.       ..++.+ .+++...+.+++.++|+++|.
T Consensus        11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~   88 (319)
T cd00814          11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY   88 (319)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence            4599999999875522  333443  8888655 445553321       024443 444567788899999998874

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=90.40  E-value=0.72  Score=48.06  Aligned_cols=65  Identities=18%  Similarity=0.338  Sum_probs=42.3

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecCC-------CCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~~-------~d~~-~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      |+|.+||||+.+.+  .-+.++++  |++++++ =.|.|..-..       .++. -++++...+.+++.++||++|.
T Consensus        15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~   92 (648)
T PRK12267         15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK   92 (648)
T ss_pred             CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            55999999987655  22444444  8887654 5566644210       2443 3455667888899999998873

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=89.23  E-value=0.92  Score=44.30  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeec---------C-C------CCHHH--------HHHHHHH
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAIT---------L-P------YDTQQ--------LSKATRE  137 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~t---------~-~------~d~~~--------i~~~~~~  137 (287)
                      |+|.+||||+.+.+  .-+.++++  |++|++.. .|.|.+-         . .      .++++        .+++...
T Consensus        12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (382)
T cd00817          12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGK   91 (382)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence            56999999988755  22445555  88886654 4555321         1 0      12222        2344556


Q ss_pred             HHHHHHHcCCCCC
Q 023084          138 TAAIYLACGIDNS  150 (287)
Q Consensus       138 ~i~~~lA~GiDp~  150 (287)
                      +.+++.++|+..|
T Consensus        92 ~~~~~~~lgi~~D  104 (382)
T cd00817          92 IREQLKRLGASVD  104 (382)
T ss_pred             HHHHHHHhCceee
Confidence            6778888997433

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PLN02946 cysteine-tRNA ligase

Probab=88.42  E-value=2.8  Score=43.36  Aligned_cols=77  Identities=12%  Similarity=-0.057  Sum_probs=46.8

Q ss_pred             CCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eeccee--ecC-----CCCHH-HHHHHHH
Q 023084           72 ASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHA--ITL-----PYDTQ-QLSKATR  136 (287)
Q Consensus        72 ~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA--~t~-----~~d~~-~i~~~~~  136 (287)
                      .|..+..+.+|+ ..||  +.+||||+.+.+  .-+.++.+  |++|.+. -.|.|.  ++.     ..++. ..++++.
T Consensus        74 ~P~~~~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~  152 (557)
T PLN02946         74 KPKVEGKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCE  152 (557)
T ss_pred             ccCCCCceeEEE-eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHH
Confidence            344455677775 4788  889999988755  22344434  8888654 223321  111     02443 3455677


Q ss_pred             HHHHHHHHcCCCC
Q 023084          137 ETAAIYLACGIDN  149 (287)
Q Consensus       137 ~~i~~~lA~GiDp  149 (287)
                      ++.+++.++|+.+
T Consensus       153 ~f~~d~~~LnI~~  165 (557)
T PLN02946        153 EFLSDMAYLHCLP  165 (557)
T ss_pred             HHHHHHHHCCCCC
Confidence            8888999999853

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=88.19  E-value=1.3  Score=47.82  Aligned_cols=71  Identities=14%  Similarity=0.159  Sum_probs=44.8

Q ss_pred             ceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC------C-CCH-HHHHHHHHHHHHHHHH
Q 023084           79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL------P-YDT-QQLSKATRETAAIYLA  144 (287)
Q Consensus        79 ~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~------~-~d~-~~i~~~~~~~i~~~lA  144 (287)
                      ..+.+|+ -|||.+|+||..+.+  .-+.++++  |++|.+..+ |.|.+-.      . .++ +...+++.++.+++.+
T Consensus        31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~  110 (842)
T TIGR00396        31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA  110 (842)
T ss_pred             EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            4565553 234999999988754  22455555  899877765 4444311      1 133 4456677888899999


Q ss_pred             cCCCC
Q 023084          145 CGIDN  149 (287)
Q Consensus       145 ~GiDp  149 (287)
                      +|+..
T Consensus       111 lG~~~  115 (842)
T TIGR00396       111 LGFSY  115 (842)
T ss_pred             hCCcc
Confidence            99643

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PLN02563 aminoacyl-tRNA ligase

Probab=87.78  E-value=3.8  Score=45.06  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=47.5

Q ss_pred             CceEEEee-cCCCc-chhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-C------CCH-HHHHHHHHHHHHHH
Q 023084           78 KKRIVSGV-QPTGS-IHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-P------YDT-QQLSKATRETAAIY  142 (287)
Q Consensus        78 ~~~iytGi-~PTG~-lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-~------~d~-~~i~~~~~~~i~~~  142 (287)
                      ++++.+++ -|+|. +|+||..+.+  .-+.++++  |++|++.++ |-|.+-. .      ..+ +...+++..+.+++
T Consensus       111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~  190 (963)
T PLN02563        111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL  190 (963)
T ss_pred             CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence            35677776 34597 9999988644  22455555  889877765 4454421 0      122 34556778888899


Q ss_pred             HHcCC--CCCc
Q 023084          143 LACGI--DNSK  151 (287)
Q Consensus       143 lA~Gi--Dp~k  151 (287)
                      ..+|+  |+++
T Consensus       191 ~~lG~s~DW~r  201 (963)
T PLN02563        191 KSLGFSYDWDR  201 (963)
T ss_pred             HHhCcEeeCCC
Confidence            99994  6665

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=87.02  E-value=3.9  Score=41.16  Aligned_cols=72  Identities=11%  Similarity=-0.041  Sum_probs=44.2

Q ss_pred             eEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-c-C-----CCCHHH-HHHHHHHHHHHHHHcC
Q 023084           80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQ-LSKATRETAAIYLACG  146 (287)
Q Consensus        80 ~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~-t-~-----~~d~~~-i~~~~~~~i~~~lA~G  146 (287)
                      ...+|-=|-|.+||||..+.+  .-+.++++  |++|.+..+ |.|.- + .     ..++.+ .+.+...+.+++.++|
T Consensus        24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~Lg  103 (465)
T TIGR00435        24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALN  103 (465)
T ss_pred             EEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence            344566666999999988755  22344433  889866544 55421 0 0     013433 3446677888899999


Q ss_pred             CCCCc
Q 023084          147 IDNSK  151 (287)
Q Consensus       147 iDp~k  151 (287)
                      +.++.
T Consensus       104 I~~d~  108 (465)
T TIGR00435       104 VLPPD  108 (465)
T ss_pred             CCCCc
Confidence            97553

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=85.42  E-value=1.6  Score=47.03  Aligned_cols=74  Identities=18%  Similarity=0.179  Sum_probs=48.4

Q ss_pred             CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeecCC---------CCHH-HHHHHHHHHHHH
Q 023084           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDTQ-QLSKATRETAAI  141 (287)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA~t~~---------~d~~-~i~~~~~~~i~~  141 (287)
                      ++++|..=| -|||.||+||..+..  .-+.++++  |++|++-++ |||+=.|         .+|. -...++.++.++
T Consensus        34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q  112 (814)
T COG0495          34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ  112 (814)
T ss_pred             CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            355555555 589999999966421  22333444  888877665 7777434         2553 355678888889


Q ss_pred             HHHcCC--CCCc
Q 023084          142 YLACGI--DNSK  151 (287)
Q Consensus       142 ~lA~Gi--Dp~k  151 (287)
                      +.++|+  |+++
T Consensus       113 lk~lG~siDW~R  124 (814)
T COG0495         113 LKSLGFSIDWRR  124 (814)
T ss_pred             HHHhCCcccccc
Confidence            999886  5655

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=84.60  E-value=5.6  Score=42.25  Aligned_cols=81  Identities=16%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             CCCCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecce-eecC-----CCCHHH-HHHH
Q 023084           70 PVASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLH-AITL-----PYDTQQ-LSKA  134 (287)
Q Consensus        70 ~~~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~h-A~t~-----~~d~~~-i~~~  134 (287)
                      +-.|..+..+++|+ ..||  +.+||||+.+.+  .-+.++.+  |++|.+.  +.|.- +++.     ..++.+ .+++
T Consensus       240 ~f~P~~~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y  318 (699)
T PRK14535        240 PFAPIDPENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARF  318 (699)
T ss_pred             ccccCCCCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHH
Confidence            33344455677775 6777  789999988755  22344433  8888665  33321 1111     024433 4456


Q ss_pred             HHHHHHHHHHcCCCCCc
Q 023084          135 TRETAAIYLACGIDNSK  151 (287)
Q Consensus       135 ~~~~i~~~lA~GiDp~k  151 (287)
                      +.++.+++.++||.+..
T Consensus       319 ~~~F~~d~~~LnI~~p~  335 (699)
T PRK14535        319 IQAMHEDADALGVLRPD  335 (699)
T ss_pred             HHHHHHHHHHcCCCCCc
Confidence            67788888899987643

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6

Probab=83.75  E-value=3.9  Score=39.23  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=39.4

Q ss_pred             CCCCceEEEeecCC--CcchhhhHHHHH--HHHHH-Hhc-cCcEEEE--EecceeecCC------CCHHH-HHHHHHHHH
Q 023084           75 SSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIA-LQN-SYETLFF--IVDLHAITLP------YDTQQ-LSKATRETA  139 (287)
Q Consensus        75 ~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~-LQ~-g~~~~il--IaD~hA~t~~------~d~~~-i~~~~~~~i  139 (287)
                      .+..+++|+ ..||  ...||||+...+  .-+.+ |+. |+++.+.  |+|.---+-.      .++.+ .+++++++.
T Consensus         5 ~~~~v~~Y~-CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~   83 (300)
T PF01406_consen    5 NPGKVRMYV-CGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFF   83 (300)
T ss_dssp             CTTEEEEEE-EEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred             CCCeEEEEc-CCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            345566665 4566  789999998765  11222 344 8887554  7777322211      13333 445677788


Q ss_pred             HHHHHcCCCCC
Q 023084          140 AIYLACGIDNS  150 (287)
Q Consensus       140 ~~~lA~GiDp~  150 (287)
                      +++.++|+.+-
T Consensus        84 ~dm~~Lnv~~p   94 (300)
T PF01406_consen   84 EDMKALNVLPP   94 (300)
T ss_dssp             HHHHHTT----
T ss_pred             HHHHHcCCCCC
Confidence            88889998653

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.

>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=83.38  E-value=2.2  Score=44.52  Aligned_cols=100  Identities=16%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             eEEEeec--CCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        80 ~iytGi~--PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      .|+|-|=  |-|.+||||.-....++=....-..+-++-=|+   |||.  .+-.++-..+.++..++|++|-|  |=+.
T Consensus       248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDD---TNPE--kEee~yf~sI~e~V~WLG~~P~k--vTys  320 (764)
T KOG1148|consen  248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDD---TNPE--KEEEEYFESIKEMVAWLGFEPYK--VTYS  320 (764)
T ss_pred             eeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCC---CCcc--hhhHHHHHHHHHHHHHhCCCcee--eecc
Confidence            5777774  559999999743223332112212355565666   3432  12333444455555678999976  4567


Q ss_pred             cchh-hhhHHHHH-------HhccCCHHHHhchhcHH
Q 023084          158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQFK  186 (287)
Q Consensus       158 S~~~-~~~el~w~-------L~~~~t~~~L~R~~~~k  186 (287)
                      ||+. +..+++..       +.|+.+..++++...++
T Consensus       321 SDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~  357 (764)
T KOG1148|consen  321 SDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN  357 (764)
T ss_pred             hhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence            8863 34444333       55888888887444433

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=82.86  E-value=12  Score=37.32  Aligned_cols=73  Identities=10%  Similarity=-0.028  Sum_probs=42.9

Q ss_pred             CCCceEEE-eecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccee--ecC-----CCCHHH-HHHHHHHHHHH
Q 023084           76 SVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQ-LSKATRETAAI  141 (287)
Q Consensus        76 ~~~~~iyt-Gi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA--~t~-----~~d~~~-i~~~~~~~i~~  141 (287)
                      +..+++|+ |-=|=+.+||||+.+.+  .-++++++  |++|.+..+ |.|.  ++.     ..++++ .+++..+..++
T Consensus        34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d  113 (411)
T TIGR03447        34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED  113 (411)
T ss_pred             CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            34555554 43333899999988765  33455554  888876633 2221  111     024433 44566778888


Q ss_pred             HHHcCCC
Q 023084          142 YLACGID  148 (287)
Q Consensus       142 ~lA~GiD  148 (287)
                      +.++|+.
T Consensus       114 ~~~Lni~  120 (411)
T TIGR03447       114 MEALRVL  120 (411)
T ss_pred             HHHcCCC
Confidence            8889864

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=82.60  E-value=1.7  Score=47.79  Aligned_cols=44  Identities=32%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA  121 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA  121 (287)
                      ++.+.+|. -|||.+|+||.+...  .-+.+++.  |+++.+..+=+|+
T Consensus        61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~  109 (995)
T PTZ00419         61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHA  109 (995)
T ss_pred             eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCC
Confidence            34555544 357999999988644  22455655  8998776554444

>PLN02843 isoleucyl-tRNA synthetase

Probab=81.40  E-value=2.4  Score=46.52  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             CceEEEee-cCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC--------------CCCHHHHHHHHH-
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL--------------PYDTQQLSKATR-  136 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~--------------~~d~~~i~~~~~-  136 (287)
                      ++.+.+|. -++|.+||||.+..+.+  +++++.  |+++.+..+ |-|.+-.              ..++++.++.++ 
T Consensus        33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~  112 (974)
T PLN02843         33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK  112 (974)
T ss_pred             CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence            44554453 35799999999875422  444554  888866544 4442211              124444443332 


Q ss_pred             -------HHHHHHHHcCC--CCCc
Q 023084          137 -------ETAAIYLACGI--DNSK  151 (287)
Q Consensus       137 -------~~i~~~lA~Gi--Dp~k  151 (287)
                             .+.+++..+|+  |+++
T Consensus       113 ~~~~~~~~~~~~~~~lG~~~Dw~~  136 (974)
T PLN02843        113 FAKKTVDTQRESFKRYGVWGDWEN  136 (974)
T ss_pred             HHHHHHHHHHHHHHHhCCceecCC
Confidence                   23567788898  8876

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=81.17  E-value=2.8  Score=44.83  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=43.1

Q ss_pred             CceEEE-eecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee-e---------cC--CCC--H--------HH
Q 023084           78 KKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA-I---------TL--PYD--T--------QQ  130 (287)
Q Consensus        78 ~~~iyt-Gi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA-~---------t~--~~d--~--------~~  130 (287)
                      ++.+.+ .--|+|.+||||..+.+  .-+.++++  |+++.+..+-+|. +         .+  +.+  .        +-
T Consensus        39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~  118 (800)
T PRK13208         39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL  118 (800)
T ss_pred             cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence            345555 33567999999988754  22445554  8888776654433 2         11  111  1        12


Q ss_pred             HHHHHHHHHHHHHHcCC--CCCc
Q 023084          131 LSKATRETAAIYLACGI--DNSK  151 (287)
Q Consensus       131 i~~~~~~~i~~~lA~Gi--Dp~k  151 (287)
                      ..++...+.+++.++|+  |.++
T Consensus       119 ~~~~~~~~~~~~~~lg~s~Dw~~  141 (800)
T PRK13208        119 TDEDEKKFRELWRRLGLSVDWSL  141 (800)
T ss_pred             HHHHHHHHHHHHHHhCeeeccCC
Confidence            33455667788888997  5544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
3n9i_A	346	Crystal Structure Of Tryptophanyl-Trna Synthetase F		2e-57
3prh_A	388	Tryptophanyl-Trna Synthetase Val144pro Mutant From		3e-54
1i6m_A	328	1.7 High Resolution Experimental Phases For Tryptop		1e-52
3sz3_A	341	Crystal Structure Of Tryptophanyl-Trna Synthetase F		9e-50
1i6k_A	328	1.7 High Resolution Experimental Phases For Tryptop		1e-49
3fi0_A	326	Crystal Structure Analysis Of B. Stearothermophilus		1e-49
1d2r_A	326	2.9 A Crystal Structure Of Ligand-Free Tryptophanyl		1e-49
2el7_A	337	Crystal Structure Of Tryptophanyl-Trna Synthetase F		3e-46
3fhj_D	287	Independent Saturation Of Three Trprs Subsites Gene		1e-45
3fhj_A	300	Independent Saturation Of Three Trprs Subsites Gene		1e-42
3fhj_E	293	Independent Saturation Of Three Trprs Subsites Gene		1e-42
3fhj_C	280	Independent Saturation Of Three Trprs Subsites Gene		1e-42
3fhj_F	297	Independent Saturation Of Three Trprs Subsites Gene		1e-41
3fhj_B	292	Independent Saturation Of Three Trprs Subsites Gene		2e-38
3u1v_A	338	X-Ray Structure Of De Novo Design Cysteine Esterase		1e-37
2yy5_A	348	Crystal Structure Of Tryptophanyl-Trna Synthetase F		3e-37
2g36_A	340	Crystal Structure Of Tryptophanyl-Trna Synthetase (		2e-35
3m5w_A	322	Crystal Structure Of Tryptophanyl-Trna Synthetase F		7e-33
2a4m_A	331	Structure Of Trprs Ii Bound To Atp Length = 331		1e-21
1yi8_B	351	Crystal Structure Of Tryptophanyl Trrna Synthetase		1e-20
2cyb_A	323	Crystal Structure Of Tyrosyl-Trna Synthetase Comple		4e-07
1j1u_A	306	Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta		4e-06
3a04_A	372	Crystal Structure Of Tryptophanyl-Trna Synthetase F		7e-06
3n2y_A	314	Crystal Structure Of Tyrosyl-Trna Synthetase Comple		4e-05
2ag6_A	314	Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S		6e-05
1zh0_A	314	Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy		9e-05
1u7x_A	312	Crystal Structure Of A Mutant M. Jannashii Tyrosyl-		1e-04
1zh6_A	314	Crystal Structure Of P-Acetylphenylalanine-Trna Syn		2e-04
3d6u_A	314	Crystal Structure Of 4-(Trifluoromethyldiazirinyl)		7e-04
3qe4_A	312	An Evolved Aminoacyl-Trna Synthetase With Atypical		7e-04
2hgz_A	306	Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trn		7e-04

>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Yersinia Pestis Co92 Length = 346

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 144/221 (65%), Gaps = 13/221 (5%)
Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N  
Sbjct: 121 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKV 284
                          IFK+PEP IP AGARVMSL D   K+
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKM 208

>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B. Subtilis Length = 388

Iteration: 1
 Score =  208 bits (529), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 136/209 (65%), Gaps = 14/209 (6%)
Query: 76  SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
           ++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D  +L K  
Sbjct: 33  TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
           R  AA+YLA G+D  KA++F+QS V AH +  W++     IG L +M QFK+KS   G E
Sbjct: 93  RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 255
            V   LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N              
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND--------- 201
Query: 256 XXAIFKVPEPLIPPAGARVMSLTDGLSKV 284
              IF +PE  IP  GAR+MSL D L K+
Sbjct: 202 ---IFTIPEVKIPKVGARIMSLNDPLKKM 227

>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328

Iteration: 1
 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 133/206 (64%), Gaps = 14/206 (6%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N                 
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
           +F +PE  IP  GAR+MSL D   K+
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKM 193

>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Vibrio Cholerae With An Endogenous Tryptophan Length = 341

Iteration: 1
 Score =  193 bits (491), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 135/212 (63%), Gaps = 10/212 (4%)
Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S++  K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L 
Sbjct: 1   SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
           +AT +  AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS + 
Sbjct: 61  EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXX 252
             + V   L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N           
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN---------NI 170
Query: 253 XXXXXAIFKVPEPLIPPAGARVMSLTDGLSKV 284
                 IF +PEP IP   ARVMSL D   K+
Sbjct: 171 YSPEQPIFTIPEPYIPTVNARVMSLQDATKKM 202

>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 128/205 (62%), Gaps = 14/205 (6%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W L     IG L +  QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N                 
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSK 283
           +F +PE  IP  GAR+ SL D   K
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKK 192

>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus Tryptophanyl-Trna Synthetase Complexed With Tryptophan, Amp, And Inorganic Phosphate Length = 326

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/205 (49%), Positives = 128/205 (62%), Gaps = 14/205 (6%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W L     IG L +  QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N                 
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSK 283
           +F +PE  IP  GAR+ SL D   K
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKK 192

>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna Synthetase: Domain Movements Fragment The Adenine Nucleotide Binding Site. Length = 326

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 130/206 (63%), Gaps = 14/206 (6%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  A      
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N                 
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
           +F +PE  IP  GAR+MSL D   K+
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKM 193

>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Thermus Thermophilus Length = 337

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 131/210 (62%), Gaps = 19/210 (9%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLP--YDTQQLSKA 134
           KR++SG+QP+G IH+GNYLGAIK W+A+      +  F IVD HA+T P  YD   L++ 
Sbjct: 2   KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           T E A + +A G+D  K ++FVQSHV  H EL W+ ++ TP+G L +M QFK+K+ K   
Sbjct: 62  TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXX 254
           E V   LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N             
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGET------- 172
Query: 255 XXXAIFKVPEPLIPPAGARVMSLTDGLSKV 284
                F  P+ L+ P   RV  + DG +K+
Sbjct: 173 -----FPEPQALLNPEAPRVPGI-DGKAKM 196

>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29, Northeast Structural Genomics Consortium Target Or52 Length = 338

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 114/201 (56%), Gaps = 14/201 (6%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I S + PTG I +G Y+GA++ ++ LQ+ Y   F I D  AIT+  D  +L +  R  
Sbjct: 2   KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+ S V AH +  W L     IG L +   FKE S  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 258
             LLT+P + A+ ILLY +D VPVGE  KQ  ELTR+LAER N                 
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFN------------KRYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTD 279
           +F +PE  IP  GAR+ SL D
Sbjct: 168 LFTIPEARIPKVGARIXSLVD 188

>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Mycoplasma Pneumoniae Length = 348

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           KR ++G+Q +G  HLGNYLG +++ I LQ   +   F+ DLH+IT+ +  Q L +   + 
Sbjct: 5   KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 193
               LA G+D  KA +F+QS +  H  + +L+   + +G L +M QFK K  +      G
Sbjct: 65  VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124
Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
             N+   LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRI 171

>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 21/210 (10%)
Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD-TQQLSKATRE 137
           RI+SG++PTG +H+G+ +GA++NW+ LQ    E  +F+ D HA+T  YD   +L + TR+
Sbjct: 14  RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               +LACGID  K+ +FVQS V+ H EL  L S    +  L ++  +KE   +   +++
Sbjct: 74  LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133
Query: 198 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXX 256
             A  L YPVL A+DIL+Y+++ VPVGEDQ  H+ELTRE+A R N               
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN------------YLY 181
Query: 257 XAIFKVPE------PLIPPAGARVMSLTDG 280
             +F  PE      P +P    R MS + G
Sbjct: 182 DEVFPEPEAILSRVPKLPGTDGRKMSKSYG 211

>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Length = 322

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 115/201 (57%), Gaps = 15/201 (7%)
Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
           R+++G+QP+G +H+GNY GAIK  +  Q   +   FI + HA T   D ++L + + + A
Sbjct: 5   RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 199
           A +L+ GID  K+  ++QS V+   EL W+LS  TP G L +   +K+K   A G +   
Sbjct: 65  AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122
Query: 200 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXAI 259
            L +YPVL A+DILL+ +  VPVG+DQ QH+E+ R++A +VN                 I
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVN------------NEWGEI 170
Query: 260 FKVPEPLIPPAGARVMSLTDG 280
           F +PE  +    A V+  TDG
Sbjct: 171 FTLPEARVNEEVAVVVG-TDG 190

>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATR 136
           + R+++G +PTG++HLG+  G+++N + LQ+  E    + D+ A+T  +D  +Q+ +   
Sbjct: 2   RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 195
             A  YLA G+D  K +  VQS V    EL     +   +  L +    K E + K  GE
Sbjct: 62  AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            V      YPV  A+DI  + +  VPVG+DQ   LE TRE+  R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 167

>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRETA 139
           +++G +PTG++HLG+  G+++N + LQ+  E    + D+ A+T  +D  +Q+ +     A
Sbjct: 25  VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 198
             YLA G+D  K +  VQS V    EL     +   +  L +    K E + K  GE V 
Sbjct: 85  LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                YPV  A+DI  + +  VPVG+DQ   LE TRE+  R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 187

>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT-QQLSKAT 135
           K R   G +P+G IHLG+ +  ++  + LQ + +E +  + D+HA      T +++++  
Sbjct: 32  KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGG 194
                +++A G+D S+A   + S  +   + +  +     I  LN+  +   E S +   
Sbjct: 91  DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-- 148
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
           E+  V+ + YP++ A DI     D    G DQ++   L RE
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189

>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +DI     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183

>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 72  ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DT 128
           A +   +  +++G  P+G  H G+ L  +   I LQ N ++    I D  A  +      
Sbjct: 64  AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE 122
Query: 129 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HVELMWLLSSATPIGWLNKMIQFKE 187
           + +  A  E  A  +A G+D      + Q++    +  L+ L S       +  +     
Sbjct: 123 EAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIY---- 178
Query: 188 KSHKAGGENVGVALLTYPVLMASDILLYQSD--------FVPVGEDQKQHLELTRELAER 239
                 GE     ++   +  A+DIL  Q D         VPVG DQ  HL LTR+LA+R
Sbjct: 179 ------GELTPAKMMA-SLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADR 231
Query: 240 V 240
           +
Sbjct: 232 M 232

>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S     + +   ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  + I     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183

>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
           VA + YP+ M  + L Y+   V VG  E +K H+ L REL
Sbjct: 146 VAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183

>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetase In Complex With L-3-(2-Napthyl)alanine Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D V  G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183

>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  + I     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183

>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183

>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl) Phenylalanyl-Trna Synthetase Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
           +K  + G +P+G IHLG+YL  IK  I LQN+ ++ +  + DL A +    +  ++ K  
Sbjct: 28  EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHV--RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
                ++ A G+      V+  S +  + +   ++ L+  T +    + ++   +     
Sbjct: 87  DYNKKVFEAMGL--KAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIARED--- 141
Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
            EN  VA + YP+ M  + L Y+   V VG  E +K H+ L REL
Sbjct: 142 -ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183

>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical Polysubstrate Specificity Length = 312

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-------G 194
           + A G+   KA     S         W+L     +      ++   K  +          
Sbjct: 93  FEAMGL---KAKYVYGSE--------WMLDKDYTLNVYRLALKTTLKRARRSMELIARED 141
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           EN  VA + YP++  +       D    G +Q++   L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183

>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna Synthetase Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 33  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 91
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 92  FEAMGL---KAKYVYGSPFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 144
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D    G +Q++   L REL
Sbjct: 145 VAEVIYPIMQVNTSHRLGVDVAVGGMEQRKIHMLAREL 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	1e-132
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	1e-131
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	1e-128
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	1e-128
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	1e-128
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	1e-123
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	1e-120
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	1e-111
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	1e-105
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	7e-71
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	4e-45
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	8e-69
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	6e-65
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	7e-64
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	5e-56
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	3e-35
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	5e-35
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	1e-34
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	1e-33
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	1e-32
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	9e-32
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	1e-30
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	2e-19
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	2e-12
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	1e-08
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	2e-08
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	9e-08
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	1e-07

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346

 Score =  377 bits (971), Expect = e-132
 Identities = 112/220 (50%), Positives = 146/220 (66%), Gaps = 13/220 (5%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60

Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179

Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
           YG             IFK+PEP IP AGARVMSL D   K
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKK 207

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341

 Score =  374 bits (962), Expect = e-131
 Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)

Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S++  K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L 
Sbjct: 1   SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60

Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
           +AT +  AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS + 
Sbjct: 61  EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119

Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
              +V   L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N +Y   +    
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175

Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                 IF +PEP IP   ARVMSL D   K
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKK 201

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388

 Score =  369 bits (950), Expect = e-128
 Identities = 108/212 (50%), Positives = 136/212 (64%), Gaps = 14/212 (6%)

Query: 72  ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
               ++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D  +L
Sbjct: 29  IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88

Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
            K  R  AA+YLA G+D  KA++F+QS V AH +  W++     IG L +M QFK+KS  
Sbjct: 89  RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
            G E V   LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N  Y       
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201

Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                  IF +PE  IP  GAR+MSL D L K
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKK 226

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328

 Score =  367 bits (944), Expect = e-128
 Identities = 106/205 (51%), Positives = 134/205 (65%), Gaps = 14/205 (6%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N  Y            G 
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167

Query: 259 IFKVPEPLIPPAGARVMSLTDGLSK 283
           +F +PE  IP  GAR+MSL D   K
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKK 192

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348

 Score =  367 bits (944), Expect = e-128
 Identities = 81/212 (38%), Positives = 117/212 (55%), Gaps = 17/212 (8%)

Query: 77  VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
           + KR ++G+Q +G  HLGNYLG +++ I LQ   +   F+ DLH+IT+ +  Q L +   
Sbjct: 3   MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 191
           +     LA G+D  KA +F+QS +  H  + +L+   + +G L +M QFK K  +     
Sbjct: 63  DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
            G  N+   LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+   +       
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKF------- 175

Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                    ++P+ +      R+M L D   K
Sbjct: 176 -----KLKLRLPQFVQNKDTNRIMDLFDPTKK 202

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322

 Score =  355 bits (913), Expect = e-123
 Identities = 80/210 (38%), Positives = 124/210 (59%), Gaps = 17/210 (8%)

Query: 76  SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
           S   R+++G+QP+G +H+GNY GAIK  +  Q   +   FI + HA+T   D ++L + +
Sbjct: 1   SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
            + AA +L+ GID  K+  ++QS V+  +EL W+LS  TP+G L +   +K+K  K  G 
Sbjct: 61  LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255
           +    L +YPVLMA+DILL+ +  VPVG+DQ QH+E+ R++A +VN  +           
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW----------- 167

Query: 256 GGAIFKVPEPLIPPAGARVMSLTDG--LSK 283
            G IF +PE  +    A V+   DG  +SK
Sbjct: 168 -GEIFTLPEARVNEEVAVVVGT-DGAKMSK 195

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337

 Score =  346 bits (889), Expect = e-120
 Identities = 98/209 (46%), Positives = 133/209 (63%), Gaps = 19/209 (9%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 134
           KR++SG+QP+G IH+GNYLGAIK W+A+      +  F IVD HA+T P   D   L++ 
Sbjct: 2   KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           T E A + +A G+D  K ++FVQSHV  H EL W+ ++ TP+G L +M QFK+K+ K   
Sbjct: 62  TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
           E V   LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+          
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169

Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
             G  F  P+ L+ P   RV  + DG +K
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAK 195

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351

 Score =  324 bits (833), Expect = e-111
 Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 16/227 (7%)

Query: 59  YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118
           + ++ +   T P  +++  + R+++G +PTG++HLG+  G+++N + LQ+  E    + D
Sbjct: 3   FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62

Query: 119 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 177
           + A+T  +D  +Q+ +     A  YLA G+D  K +  VQS V    EL     +   + 
Sbjct: 63  VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122

Query: 178 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
            L +    K +  + G GE V      YPV  A+DI  + +  VPVG+DQ   LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182

Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
             R N LY              +   P+  +     R+  L DG +K
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAK 215

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340

 Score =  307 bits (789), Expect = e-105
 Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 19/211 (9%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 135
             RI+SG++PTG +H+G+ +GA++NW+ LQ    E  +F+ D HA+T  Y D  +L + T
Sbjct: 12  HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 194
           R+    +LACGID  K+ +FVQS V+ H EL  L S    +  L ++  +KE   +    
Sbjct: 72  RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
           +      L YPVL A+DIL+Y+++ VPVGEDQ  H+ELTRE+A R NYLY          
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181

Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDG--LSK 283
               +F  PE ++     ++    DG  +SK
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DGRKMSK 208

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score =  230 bits (588), Expect = 7e-71
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
             R   G +P+G +H+   +    N      +  E +F++ D  A+    +  + +++  
Sbjct: 40  LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99

Query: 134 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
             R    ++ A G+D  K   ++    + +H +  W +         + ++ +      K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
                +  A + YP++   DI   ++D   +G DQ++   L RE  + +           
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212

Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                      P  L       +  L  G +K
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAK 230

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score =  160 bits (407), Expect = 4e-45
 Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 34/238 (14%)

Query: 51  HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 109
                +R          TA  A+ +     +         + +    +   K++IA    
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415

Query: 110 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 166
                 + D  A+    +    + +S A +   A+  A G+ +S   V     +  + + 
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475

Query: 167 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 225
            W+          L+ + +        GGE      +   ++  +  L+     V     
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529

Query: 226 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                   RE  +                            +     R+ +L    + 
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAA 564

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375

 Score =  217 bits (553), Expect = 8e-69
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 13/219 (5%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
             +   G + +G IHLG  L A       Q +  +T  F+ D H+     L  D + + +
Sbjct: 33  PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92

Query: 134 ATRET-----AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
              +             G D  K    + S +    +    +   +    L+++++    
Sbjct: 93  VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152

Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
             +  GE +  A L YP++  +DI          G DQ++   +  E+A+++ Y     +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212

Query: 249 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSK 283
            +KL         +      P  P              K
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMK 251

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373

 Score =  206 bits (527), Expect = 6e-65
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 26/212 (12%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 133
           K     G +P+G +H+   L        L ++    +F+I D  A     +  D +++ K
Sbjct: 56  KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115

Query: 134 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
                  ++ +CG++         S  +       W L    +    +N+M +  +   +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
           + GE    + + YP +  +DI     D   +G DQ++   L RE  +             
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226

Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                       +  +  +   +  L +G  K
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEK 247

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348

 Score =  203 bits (518), Expect = 7e-64
 Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 35/217 (16%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 133
                +G +P+G IH+   L  + N   +     + + +I D  A   + +  D  ++ +
Sbjct: 40  IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99

Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 189
             R    ++ ACGI+         S       +++E M  ++  + I  + +  Q   ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159

Query: 190 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 246
                + +  + + YP + A+D+        D   +G DQ++   L  E A         
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212

Query: 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
                            +  I  +   +MSL+    K
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKK 232

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392

 Score =  184 bits (469), Expect = 5e-56
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 134
              + +G  P+G +H+G+ +      W+  +        I D        +       + 
Sbjct: 73  GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
             +     +A G D  K  +F  S      E+   ++          +  F E+S     
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188

Query: 195 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYG 245
               + ++ +P +  +     +    +P   DQ  +  L R+ AE + Y   
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT 236

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437

 Score =  130 bits (328), Expect = 3e-35
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 18/179 (10%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  I   W+    +   +  + D    +       Q    
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
             E A   +ACG D +K   F+ S +           +   I       Q K        
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223

Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
           ++  +  +++P + A+                    +P   DQ  +  +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 282

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477

 Score =  130 bits (328), Expect = 5e-35
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 20/180 (11%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  I   W+    +   +  + D    +       Q    
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
             E A   +ACG D +K  +F            +       +  + K + F +     G 
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269

Query: 194 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
            ++  +  +++P + A+                    +P   DQ  +  +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395

 Score =  128 bits (322), Expect = 1e-34
 Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 28/210 (13%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 134
              + +G  P+  S+H+G+ +  +   W+        +  + D           +Q+   
Sbjct: 78  PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
           T E     +A G D     +F       ++  M+       +  + +     +     G 
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189

Query: 194 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 241
                     +P + A+                     +P   DQ  +  LTR++A R+ 
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249

Query: 242 YLYG----GRKWKKLGGRGGAIFKVPEPLI 267
           YL       + +  L G  G +       +
Sbjct: 250 YLKPAVIHSKFFPGLSGPKGKMSSSSGTAV 279

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432

 Score =  126 bits (317), Expect = 1e-33
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 25/182 (13%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 133
              + +G  P+  S+HLG+ +  +   W+        +  + D       +      +  
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161

Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 191
             RE A   +A G D     +F           E +  +S          +  F +    
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
                  +    +  +  +                    +P   DQ  +  + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273

Query: 241 NY 242
            Y
Sbjct: 274 KY 275

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393

 Score =  122 bits (308), Expect = 1e-32
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 26/184 (14%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 132
              + +G  P+  S+H+G+ +  +     LQ++     +  + D        +   ++  
Sbjct: 74  LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132

Query: 133 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
               E     +ACG D     +F     +      +  +        +  +  FK+  + 
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
                  V    +P + A+                    VP   DQ  +  + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244

Query: 241 NYLY 244
            YL 
Sbjct: 245 GYLK 248

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386

 Score =  120 bits (302), Expect = 9e-32
 Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 26/207 (12%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 134
              I     P   + L  Y+        LQ+++     I  L  I +        + SK 
Sbjct: 82  PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140

Query: 135 TRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
           + +     LA G +  K  ++    +       + L+  AT    +     F+   +   
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197

Query: 194 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLY 244
                +  L  P +M + +                V       Q   +  ++A  +N++ 
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQ 252

Query: 245 ----GGRKWKKLGGRGGAIFKVPEPLI 267
                 +    L G            I
Sbjct: 253 PTVLFHKMVPLLSGVTKFDIPSDHNSI 279

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406

 Score =  117 bits (295), Expect = 1e-30
 Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 20/179 (11%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  +   ++        +  I D    +      +     
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
            RE     +  G D     +F       H E   L         ++K I   E     G 
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212

Query: 194 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLY 244
             +  +  + +P    +        F        VP   DQ     L R+ A+ +    
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK 271

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451

 Score = 86.8 bits (214), Expect = 2e-19
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 15/194 (7%)

Query: 78  KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 133
              I +G  P+ G++HLG+ L  I           Y  +    D   +     +  ++  
Sbjct: 91  PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150

Query: 134 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
            TRE     +ACG D  K  +F+ S    ++       L+    PI  L     F   ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210

Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
                   V    +P      +     D +P             + A+ V+     +K  
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262

Query: 251 KLGGRGGAIFKVPE 264
           K       +  V E
Sbjct: 263 KKDAVLSPVHVVEE 276

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSKA 134
           ++  G  PTG  H G ++   K       +  E    + DLHA    +  P +       
Sbjct: 41  KLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAK 99

Query: 135 TRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 189
             E     +  +  +   K    V S       +   ++ LS+        +      K 
Sbjct: 100 YYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ 159

Query: 190 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
                 N  ++ L YP++ A D      D    G DQ++   L  E    + Y
Sbjct: 160 ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY 208

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 138
           G +P+G  H+G  +   K  +  L  +  +        HA I      D   +  A R  
Sbjct: 41  GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98

Query: 139 AAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
             +  A G+   +        + +      L+  ++    +  + + +    +  +A   
Sbjct: 99  RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
            V  + L YP++  SDI     D    G DQ++   L R++AE++  
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 137
           R   G +P+G IHLG+ +   K  + LQ + +E +  + D+HA +      +++++    
Sbjct: 34  RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92

Query: 138 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
              +++A G+D S+A   + S     R +V  +  ++  T +    + +    +      
Sbjct: 93  NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
           E+  V+ + YP++ A DI     D    G DQ++   L RE   R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY 196

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
           +K    G +P+G IHLG+YL   K  I LQN+ ++ +  + DL A +    +  ++ K  
Sbjct: 28  EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86

Query: 136 RETAAIYLACGIDNSK--ASVFVQSHVRAHVELMWLLSSATPIGWLNKMI---QFKEKSH 190
                ++ A G+       S F          +  L    T    L +     +   +  
Sbjct: 87  DYNKKVFEAMGLKAKYVYGSEFQLDKDYTL-NVYRLALKTT----LKRARRSMELIARE- 140

Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
               EN  VA + YP++  +       D    G +Q++   L REL  +
Sbjct: 141 ---DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLPK 186

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 17/174 (9%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHAI----TLPYDTQQLSK 133
           +I  G   TG  H+  ++   K  IA    +  E      DLHA       P++  +L  
Sbjct: 37  KIYWGTATTGKPHVAYFVPMSK--IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 94

Query: 134 ATRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEK 188
           +  E    A+  + G+   K      +     + +   ++ LSS        K      K
Sbjct: 95  SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 154

Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
                 E+  ++ L YP L A D    + D    G DQ++      +    + Y
Sbjct: 155 Q----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	100.0
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	100.0
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	100.0
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	100.0
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	100.0
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	100.0
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	100.0
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	100.0
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	100.0
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	100.0
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	100.0
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	100.0
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	100.0
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	100.0
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	100.0
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	100.0
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	100.0
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	100.0
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	100.0
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	100.0
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	100.0
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	100.0
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	100.0
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.44
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	99.37
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.35
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.28
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.2
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.19
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	98.85
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	98.76
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	98.62
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	98.61
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	98.37
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	98.14
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	96.89
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	96.03
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	95.94
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	95.29
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	95.26
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	95.11
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	94.66
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	94.23
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	93.83
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	92.68
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	91.94
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	91.66
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	91.63
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	89.68
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	88.89
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	87.6
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	86.67
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	86.35
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	82.91
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	82.88
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	82.6
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	80.97
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	80.55

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=100.00  E-value=9.7e-62  Score=462.25  Aligned_cols=200  Identities=55%  Similarity=0.913  Sum_probs=187.9

Q ss_pred             CCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084           75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV  154 (287)
Q Consensus        75 ~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i  154 (287)
                      ...+++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++|
T Consensus        12 ~~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i   91 (346)
T 3n9i_A           12 VSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTI   91 (346)
T ss_dssp             ---CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred             CCCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence            34467999999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             EEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHH
Q 023084          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR  234 (287)
Q Consensus       155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaR  234 (287)
                      |+||+|++|.+++|+|.|.+++++|+|+.+||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+||||
T Consensus        92 f~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltR  170 (346)
T 3n9i_A           92 FVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSR  170 (346)
T ss_dssp             EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHH
Confidence            999999999999999999999999999999999887654 5789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |+|+|||+.||.            +|++|++++++.+++||||+||++|||||
T Consensus       171 dia~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS  211 (346)
T 3n9i_A          171 DIASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKS  211 (346)
T ss_dssp             HHHHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTT
T ss_pred             HHHHHhccccCC------------cccccchhccCCcccCccCCCCccccCCC
Confidence            999999999983            58999999987667899999998999998

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=7.6e-62  Score=462.30  Aligned_cols=200  Identities=50%  Similarity=0.833  Sum_probs=188.3

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      +++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus         6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q   85 (341)
T 3sz3_A            6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ   85 (341)
T ss_dssp             SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred             CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (287)
Q Consensus       158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla  237 (287)
                      |+|++|.+++|+|.|.+++++|+||.+||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||++||||+|
T Consensus        86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia  164 (341)
T 3sz3_A           86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA  164 (341)
T ss_dssp             GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence            999999999999999999999999999999987764 6789999999999999999999999999999999999999999


Q ss_pred             HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|||+.||.+         .++|++|++++++.+++||||+||++|||||
T Consensus       165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS  205 (341)
T 3sz3_A          165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKS  205 (341)
T ss_dssp             HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTT
T ss_pred             HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCC
Confidence            9999999831         1248999999986567899998898899998

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=100.00  E-value=3.1e-61  Score=464.62  Aligned_cols=195  Identities=54%  Similarity=0.861  Sum_probs=178.4

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS  158 (287)
                      .+||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus        36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS  115 (388)
T 3prh_A           36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS  115 (388)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred             CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (287)
Q Consensus       159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~  238 (287)
                      +|++|.+++|+|+|.+++++|+|+.+||++.+..  +++++|+|+||+|||||||+|++|+||||+||+||+|||||||+
T Consensus       116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~  193 (388)
T 3prh_A          116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE  193 (388)
T ss_dssp             GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887653  67899999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |||+.||.            +|.+|++++++.+++||||+||++|||||
T Consensus       194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS  230 (388)
T 3prh_A          194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKS  230 (388)
T ss_dssp             HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTT
T ss_pred             HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCC
Confidence            99999973            58999999987778999998888999998

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=100.00  E-value=6.8e-59  Score=439.83  Aligned_cols=195  Identities=53%  Similarity=0.857  Sum_probs=184.6

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS  158 (287)
                      +++|+||+|||.+|||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|+.||+||
T Consensus         2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS   81 (328)
T 1i6k_A            2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (328)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred             CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence            58999999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (287)
Q Consensus       159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~  238 (287)
                      +|++|.+++|+++|.+++++|+||.+||++.++ + +++++|+|+||+||||||++|++|+||||.||++|++++||+|+
T Consensus        82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~  159 (328)
T 1i6k_A           82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (328)
T ss_dssp             GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence            999999999999999999999999999988765 2 67899999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |||+.||.            +|++|++++++..++||||++|++|||||
T Consensus       160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS  196 (328)
T 1i6k_A          160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKS  196 (328)
T ss_dssp             HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTT
T ss_pred             HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCC
Confidence            99999983            58999999975557899996666899998

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=100.00  E-value=3e-59  Score=445.42  Aligned_cols=198  Identities=40%  Similarity=0.648  Sum_probs=183.5

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      ++++|+||+|||.||||||+|+|++|++||++++++|+|||+||+|++.|++++++++++++++|+|+||||+|++||+|
T Consensus         4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q   83 (348)
T 2yy5_A            4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ   83 (348)
T ss_dssp             CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred             CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-----CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHH
Q 023084          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL  232 (287)
Q Consensus       158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-----~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~L  232 (287)
                      |+|++|.+++|+++|.+++++|+|+.+||++.++.+     .+++++|+|+||+||||||++|++|+||||.||++|+++
T Consensus        84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel  163 (348)
T 2yy5_A           84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL  163 (348)
T ss_dssp             GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred             CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence            999999999999999999999999999998765542     367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       233 aRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +||+|++||+.||.            +|++|++++++..++||||++|++|||||
T Consensus       164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS  206 (348)
T 2yy5_A          164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKS  206 (348)
T ss_dssp             HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSS
T ss_pred             HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCC
Confidence            99999999999983            58999999976557899997667899998

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=100.00  E-value=4.7e-59  Score=439.99  Aligned_cols=194  Identities=40%  Similarity=0.710  Sum_probs=182.2

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q  157 (287)
                      ..++|+||+|||.+|||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus         3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q   82 (322)
T 3tzl_A            3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ   82 (322)
T ss_dssp             -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred             ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            45899999999999999999988999999999999999999999999889999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (287)
Q Consensus       158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla  237 (287)
                      |+|++|.+++|.++|.+++++|+|+.+||++..+.  +++++|+|+||+||||||++|++|+||||.||++|++++||+|
T Consensus        83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia  160 (322)
T 3tzl_A           83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA  160 (322)
T ss_dssp             GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence            99999999999999999999999999999886653  5799999999999999999999999999999999999999999


Q ss_pred             HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|||+.||.            +|++|++++....++|||| || +|||||
T Consensus       161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS  196 (322)
T 3tzl_A          161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKS  196 (322)
T ss_dssp             HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGG
T ss_pred             HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCC
Confidence            999999973            5999999986445679999 78 799998

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=100.00  E-value=5.1e-58  Score=437.45  Aligned_cols=201  Identities=31%  Similarity=0.509  Sum_probs=185.2

Q ss_pred             CCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        73 ~~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++.++++++|+||+|||.||||||+|+|++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|
T Consensus        17 ~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k   96 (351)
T 1yi8_B           17 AATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQK   96 (351)
T ss_dssp             ----CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred             cccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhh
Confidence            3336689999999999999999999999999999999999999999999998 689999999999999999999999999


Q ss_pred             eEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084          152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (287)
Q Consensus       152 t~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi  230 (287)
                      +.||+||+|++|.++.|.++|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||.||++|+
T Consensus        97 ~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi  176 (351)
T 1yi8_B           97 TTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPML  176 (351)
T ss_dssp             EEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred             cEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHH
Confidence            999999999999999999999999999999999999887653 3678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +++||+|+|||+.||.            +|++|+++++.. ++|||| ||++|||||
T Consensus       177 ~l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS  219 (351)
T 1yi8_B          177 EQTREIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKS  219 (351)
T ss_dssp             HHHHHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTT
T ss_pred             HHHHHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCC
Confidence            9999999999999973            589999987533 569999 897899998

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-57  Score=431.27  Aligned_cols=194  Identities=51%  Similarity=0.873  Sum_probs=182.1

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV  154 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g-~~~~ilIaD~hA~t~~--~d~~~i~~~~~~~i~~~lA~GiDp~kt~i  154 (287)
                      +++|+||+|||+||||||+|+|++|++||+ | |+++|+|||+||+|++  .+++++++++++++++|+|+|+||+|++|
T Consensus         2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i   81 (337)
T 2el7_A            2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL   81 (337)
T ss_dssp             CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred             CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence            589999999999999999999999999999 7 9999999999999997  79999999999999999999999999999


Q ss_pred             EEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHH
Q 023084          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR  234 (287)
Q Consensus       155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaR  234 (287)
                      |+||+|++|.+++|.++|.+++++|+|+.+||++.+.  .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus        82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r  159 (337)
T 2el7_A           82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR  159 (337)
T ss_dssp             EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred             EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence            9999999999999999999999999999999987643  36799999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |+|+|||+.||.            +|++|+++++..+++|||| ||++|||||
T Consensus       160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS  199 (337)
T 2el7_A          160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKS  199 (337)
T ss_dssp             HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTT
T ss_pred             HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCC
Confidence            999999999983            5899999998644579999 677799998

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=100.00  E-value=9.8e-57  Score=426.97  Aligned_cols=194  Identities=41%  Similarity=0.720  Sum_probs=177.6

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV  154 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i  154 (287)
                      ..+++|+|++|||.||||||+|+|++|++||+ |++++|+|||+||+|+ +.||+++++++++++++|+|+|+||+|+.|
T Consensus        11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i   90 (340)
T 2g36_A           11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI   90 (340)
T ss_dssp             -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred             CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence            46899999999999999999999999999999 7999999999999998 779999999999999999999999999999


Q ss_pred             EEccchhhhhHHHHHHhccCCHHHHhchhcHHH---HHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHH
Q 023084          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE  231 (287)
Q Consensus       155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~---~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~  231 (287)
                      |+||+|++|.++.|.++|.+++++|+|+.+||+   +.+.  .+++++|+|+||+||||||++|++|+||||.||++|++
T Consensus        91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~  168 (340)
T 2g36_A           91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE  168 (340)
T ss_dssp             EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred             EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence            999999999999999999999999999999998   5432  25789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       232 LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++||+|+|||+.||.            +|++|++++... ++|||| ||+ |||||
T Consensus       169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS  209 (340)
T 2g36_A          169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKS  209 (340)
T ss_dssp             HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGG
T ss_pred             HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCC
Confidence            999999999999872            589999877532 569999 686 99998

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=100.00  E-value=9.8e-51  Score=390.01  Aligned_cols=189  Identities=20%  Similarity=0.276  Sum_probs=166.9

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      +++++||+||+|||.+||||++..+.+|++||+ ||+++|+|||+||++++   .+++++++++++++++|+|+|+||+|
T Consensus        54 ~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k  133 (373)
T 3vgj_A           54 KRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN  133 (373)
T ss_dssp             CSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred             CCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence            457899999999999999996543346889999 99999999999999983   58999999999999999999999999


Q ss_pred             eEEEEccchh-hhhHHHHHHhc----cCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084          152 ASVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (287)
Q Consensus       152 t~i~~qS~~~-~~~el~w~L~~----~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ  226 (287)
                      ++||+||+|+ +|.+++|.+.+    .++++|+.++.+++.+.   ..+++++|+|+||+||||||++|++|+||||.||
T Consensus       134 ~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ  210 (373)
T 3vgj_A          134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQ  210 (373)
T ss_dssp             EEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGG
T ss_pred             eEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhh
Confidence            9999999998 89999998654    78999998888765432   2257899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++|++++||+|+|||+.|                 +|..+.+++   ||||+||++|||||
T Consensus       211 ~~~l~l~Rdla~r~~~~~-----------------~~~~l~~p~---l~gL~dG~~KMSKS  251 (373)
T 3vgj_A          211 RKVNMLAREYCDIKKIKK-----------------KPVILSHGM---LPGLLEGQEKMSKS  251 (373)
T ss_dssp             HHHHHHHHHHHHHHTCSC-----------------CCEEEEBCC---CCCSSTTCCSCCSS
T ss_pred             HHHHHHHHHHHHHhCCCC-----------------CceEEeCCe---eecCCCCCCCCcCC
Confidence            999999999999999543                 366677776   99998998999998

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.9e-51  Score=393.62  Aligned_cols=181  Identities=18%  Similarity=0.287  Sum_probs=166.2

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC-C-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~-~-~d~~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      ++++++|+|++|||.+|||||++++ .+|  ||+  |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus        71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~  148 (392)
T 3jxe_A           71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD  148 (392)
T ss_dssp             TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence            5689999999999999999999986 666  887  8899999999999987 3 6999999999999999999999999


Q ss_pred             ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc-CCCEEEeeccchHH
Q 023084          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH  229 (287)
Q Consensus       151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~-~adlvpvG~DQ~~h  229 (287)
                      |++||+||+|+++.++.|.+++.+++++++++.+|+        +++++|+|+||+|||||||++ ++|+||||.||++|
T Consensus       149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h  220 (392)
T 3jxe_A          149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY  220 (392)
T ss_dssp             SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred             ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence            999999999999999999999999999998876643        568999999999999999999 69999999999999


Q ss_pred             HHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       230 i~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +++|||+|+|||                  +++|+++++++   ||||+++++|||||
T Consensus       221 l~l~Rdla~r~n------------------~~~p~~l~~~~---l~gLdG~~~KMSKS  257 (392)
T 3jxe_A          221 WRLQRDFAESLG------------------YYKTAALHSKF---VPSLTSLSGKMSAS  257 (392)
T ss_dssp             HHHHHHHTGGGT------------------SCCCEEEEECC---CCCSSCSSSCCCTT
T ss_pred             HHHHHHHHHHcC------------------CCCCeeeeccc---ccCCCCCccccccC
Confidence            999999999998                  56899998876   99995444699998

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.2e-51  Score=393.59  Aligned_cols=192  Identities=20%  Similarity=0.271  Sum_probs=169.9

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHH-HHHH----HHHHHcC
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACG  146 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~-~~~i----~~~lA~G  146 (287)
                      ++++++|+||+|||.+|||||++++.+|++||+ |++++|+|||+||+|++   .+++++++++ ++++    ++|+|+|
T Consensus        31 ~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G  110 (375)
T 2cyc_A           31 GAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMG  110 (375)
T ss_dssp             TCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             CCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            357899999999999999998888999999999 89999999999999985   3899999999 8888    9999999


Q ss_pred             CCCCceEEEEccchhhhhHHHHHH----hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEe
Q 023084          147 IDNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV  222 (287)
Q Consensus       147 iDp~kt~i~~qS~~~~~~el~w~L----~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpv  222 (287)
                      +||+|++||+||+|+++. ++|.+    ++.+++++|.|+.+|+.+.   ..+.+++|+|+||+||||||++|++|+|||
T Consensus       111 ~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~  186 (375)
T 2cyc_A          111 GDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHA  186 (375)
T ss_dssp             CCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeecc
Confidence            999999999999999887 88886    8999999999999988753   225689999999999999999999999999


Q ss_pred             eccchHHHHHHHHHHHHHhh---hh-CCccccccCCCCCcccCCCceecCCCCcccccCCCC----------------CC
Q 023084          223 GEDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LS  282 (287)
Q Consensus       223 G~DQ~~hi~LaRdla~r~n~---~~-g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg----------------~~  282 (287)
                      |.||++|++++||+|+|||+   .| |.            .| +|..+.+++   ||||++|                ++
T Consensus       187 G~DQ~~~i~l~rdla~r~n~~~~~~~g~------------~~-~~~~~~~~~---l~gL~g~~~~~~~~~~~~~~~~~~~  250 (375)
T 2cyc_A          187 GMDQRKAHVIAIEVAQKLRYHPIVHEGE------------KL-KPVAVHHHL---LLGLQEPPKWPIESEEEFKEIKAQM  250 (375)
T ss_dssp             EGGGHHHHHHHHHHGGGCSSSCEEETTE------------EE-CCEEEEECC---CBCSSCCSSSSCCSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCcccccccc------------cC-ccEEecccc---ccCCCCcccccccchhhhhhhhhhh
Confidence            99999999999999999996   12 21            12 677766665   9999543                47


Q ss_pred             CCCCC
Q 023084          283 KVLTI  287 (287)
Q Consensus       283 KMSKS  287 (287)
                      |||||
T Consensus       251 KMSKS  255 (375)
T 2cyc_A          251 KMSKS  255 (375)
T ss_dssp             BGGGS
T ss_pred             cccCC
Confidence            99998

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=7.4e-51  Score=387.57  Aligned_cols=187  Identities=20%  Similarity=0.254  Sum_probs=154.5

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC---CHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~---d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+||+|||.+|||||++.+.+|++||+ ||+++|+|||+||+|++.   +++++++++++++++|+|+|+||+|
T Consensus        38 ~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k  117 (348)
T 2j5b_A           38 GRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDG  117 (348)
T ss_dssp             TCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence            468899999999999999998888899999999 899999999999999853   8999999999999999999999999


Q ss_pred             eEEEEccch-hhhhHHHHHHhc----cCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---CCCEEEee
Q 023084          152 ASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVG  223 (287)
Q Consensus       152 t~i~~qS~~-~~~~el~w~L~~----~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~---~adlvpvG  223 (287)
                      +.||+||+| +++. ++|.+.+    .+++++|.++.+++.+.   +.+++++|+|+||+||||||++|   ++|+||||
T Consensus       118 ~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G  193 (348)
T 2j5b_A          118 TRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLG  193 (348)
T ss_dssp             EEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCB
T ss_pred             eEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEec
Confidence            999999998 5666 8998765    77788777776665432   22578999999999999999999   99999999


Q ss_pred             ccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       224 ~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      .||++|++++||+|++||+                  ..|..+.++.   ||||+||++|||||
T Consensus       194 ~DQ~~~i~l~Rdia~r~~~------------------~~p~~~~~~~---l~gL~dg~~KMSKS  236 (348)
T 2j5b_A          194 IDQRKVNMLAIEYANDRGL------------------KIPISLSHHM---LMSLSGPKKKMSKS  236 (348)
T ss_dssp             GGGHHHHHHHHHHHHHTTC------------------CCCEEEEBCC---CCCTTCSSCCCSTT
T ss_pred             cChHHHHHHHHHHHHHhCC------------------CCceeecCcc---ccCCCCcccccccC
Confidence            9999999999999999984                  3466666665   99999898899998

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=9.9e-51  Score=388.77  Aligned_cols=187  Identities=19%  Similarity=0.279  Sum_probs=163.9

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+||+|||.+|||| ++++.+|++||+ |++++|+|||+||++++   .+++++++++++++++|+|+|+||+|
T Consensus        33 ~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k  111 (364)
T 2cya_A           33 GARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVER  111 (364)
T ss_dssp             CSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence            45789999999999999999 677889999999 89999999999999985   68999999999999999999999999


Q ss_pred             eEEEEccchhhhhHHHHH----HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccch
Q 023084          152 ASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK  227 (287)
Q Consensus       152 t~i~~qS~~~~~~el~w~----L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~  227 (287)
                      ++||+||+|+++ +++|.    ++|.+++++|+|+.+|+.+...  ..++++|+|+||+||||||++|++|+||||.||+
T Consensus       112 ~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~--~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~  188 (364)
T 2cya_A          112 VRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRAE--EAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQR  188 (364)
T ss_dssp             CEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------CC--GGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred             eEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhcC--CCCccchhhhhHHHHHhhHHhcCCCEEeccchHH
Confidence            999999999876 56776    9999999999999998876432  2458999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCC---------------CCCCCCCC
Q 023084          228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKVLTI  287 (287)
Q Consensus       228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~d---------------g~~KMSKS  287 (287)
                      +|++++||+|+|||                  +++|..+++++   ||||++               |.+|||||
T Consensus       189 ~~~~l~rdla~r~~------------------~~~p~~l~~~l---l~~l~g~~~~~~~~~~~~~~~~g~KMSKS  242 (364)
T 2cya_A          189 KAHMLARDVAEKLG------------------RKKPVAIHTPI---ISSLQGPGRMEASQGEIDDVLAEVKMSKS  242 (364)
T ss_dssp             HHHHHHHHHHTTTT------------------CCCCEEEEECC---CBCSSCC----------------CBCCSS
T ss_pred             HHHHHHHHHHHHcC------------------CCCceeeccce---eeCCCcccccccccccccccccccccCCC
Confidence            99999999999998                  45788888776   999954               26799998

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=100.00  E-value=1.4e-49  Score=381.89  Aligned_cols=181  Identities=26%  Similarity=0.388  Sum_probs=162.7

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC--CHHHHHHHHHHHHHHHHHcCCCCCce
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKA  152 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~--d~~~i~~~~~~~i~~~lA~GiDp~kt  152 (287)
                      +++++||||++|||.+|||||++++ +|+.+|+ +++++|+|||+||+|++.  +++.+++++++++++|+|+||||+|+
T Consensus        68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt  146 (372)
T 3a04_A           68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT  146 (372)
T ss_dssp             TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred             CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence            5789999999999999999999875 6777886 899999999999999853  56779999999999999999999999


Q ss_pred             EEEEccc-hhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhh--------cCCCEEEee
Q 023084          153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG  223 (287)
Q Consensus       153 ~i~~qS~-~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~--------~~adlvpvG  223 (287)
                      +||+||+ .+++.++.|.+++.+++++++++.+           ..+.|.++||+||||||++        |++++||||
T Consensus       147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG  215 (372)
T 3a04_A          147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG  215 (372)
T ss_dssp             EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred             chhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence            9999999 4689999999999999998887642           4578999999999999999        556699999


Q ss_pred             ccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       224 ~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +||+||+|||||+|+|||+.|+              +++|..+++++   +||| || .|||||
T Consensus       216 ~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~~---~pgl-dG-~KmS~S  260 (372)
T 3a04_A          216 ADQDPHLRLTRDLADRMAGVVE--------------LERPASTYHKL---QPGL-DG-RKMSSS  260 (372)
T ss_dssp             GGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEECC---CBCT-TS-SBCCTT
T ss_pred             hhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhcc---cCCC-CC-CccCCC
Confidence            9999999999999999998876              67899999887   9999 78 488887

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=100.00  E-value=1.3e-48  Score=368.53  Aligned_cols=187  Identities=16%  Similarity=0.196  Sum_probs=165.7

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHH---HHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAA  140 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~---~~~i~  140 (287)
                      ++++++|+||+|||+ +|||||++ +.+|++||+ |++++|+|||+||+|+ |.         +++++++++   +++++
T Consensus        31 ~~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~  109 (322)
T 2yxn_A           31 QGPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVA  109 (322)
T ss_dssp             HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHG
T ss_pred             CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence            457899999999999 99999996 679999999 8999999999999998 43         899999999   78888


Q ss_pred             HHHHcCCCCCceEEEEccchhh-hhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc--
Q 023084          141 IYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (287)
Q Consensus       141 ~~lA~GiDp~kt~i~~qS~~~~-~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~--  215 (287)
                      .|+|+|+||+|+.||.||+|+. +.++.|+  +++.++++++.++.++|.+.... .+++++|+|+||+||||||++|  
T Consensus       110 ~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~  188 (322)
T 2yxn_A          110 PFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNK  188 (322)
T ss_dssp             GGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhc
Confidence            8999999999999999999965 4777777  89999999999999988765421 2578999999999999999999  


Q ss_pred             --CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          216 --QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       216 --~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                        ++|+++||.||++|++++||+|+|||+                  ..|..+..|+   |||| || +|||||
T Consensus       189 ~~~~~v~~gG~DQ~~~i~l~rdla~r~n~------------------~~~~~l~~pl---l~gl-dG-~KMSKS  239 (322)
T 2yxn_A          189 QYGVVLCIGGSDQWGNITSGIDLTRRLHQ------------------NQVFGLTVPL---ITKA-DG-TKFGKT  239 (322)
T ss_dssp             HHCEEEEEECTTCHHHHHHHHHHHHHHHC------------------CCCEEEECCC---CBCT-TS-CBTTEE
T ss_pred             cCCceEEecCchhHHHHHHHHHHHHHhCC------------------CCceeeccCc---cCCC-Cc-ccccCC
Confidence              999999999999999999999999983                  2456666676   9999 88 599998

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=100.00  E-value=9.3e-48  Score=362.22  Aligned_cols=184  Identities=24%  Similarity=0.397  Sum_probs=166.6

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~-d~~~i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      ++++++|+|++|||++||||+ +++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|+.
T Consensus        30 ~~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~  108 (323)
T 2cyb_A           30 KEKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK  108 (323)
T ss_dssp             CSCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred             CCCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence            457899999999999999996 55789999999 899999999999999964 999999999999999999999999999


Q ss_pred             EEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084          154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (287)
Q Consensus       154 i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi  230 (287)
                      ||+||+|+   ++.++.|.++|.+++++++|+.++..  +..  +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus       109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~  184 (323)
T 2cyb_A          109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RRK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH  184 (323)
T ss_dssp             EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SCS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred             EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--ccc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence            99999995   78999999999999999999876532  121  345999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +++||+|++||                  +++|..++.++   ||+| +| +|||||
T Consensus       185 ~l~rdla~~~~------------------~~~p~~l~~pl---l~~l-~G-~KMSKS  218 (323)
T 2cyb_A          185 MLARENLPRLG------------------YSSPVCLHTPI---LVGL-DG-QKMSSS  218 (323)
T ss_dssp             HHHHHHGGGGT------------------CCCCEEEEECC---CBCT-TS-SBCCTT
T ss_pred             HHHHHHHHhcC------------------CCCceEEecCc---ccCC-CC-CcccCC
Confidence            99999999998                  35688888887   9999 68 699998

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=2.4e-47  Score=390.45  Aligned_cols=188  Identities=20%  Similarity=0.326  Sum_probs=162.4

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      +++++||+||+|||.+||||++....+|++||+ ||+++|+|||+||+|++   .+++++++++++++++|+|+|+||+|
T Consensus        38 ~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k  117 (690)
T 3p0j_A           38 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK  117 (690)
T ss_dssp             CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence            468999999999999999997653346889999 89999999999999973   58899999999999999999999999


Q ss_pred             eEEEEccc-hhhhhHHHHHHh----ccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084          152 ASVFVQSH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (287)
Q Consensus       152 t~i~~qS~-~~~~~el~w~L~----~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ  226 (287)
                      ++||+||+ ++++.+++|.+.    +.+|+++|.++.+++.+..    .++++|+|+||+||||||++|++|+||||.||
T Consensus       118 ~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ  193 (690)
T 3p0j_A          118 VLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQ  193 (690)
T ss_dssp             EEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGG
T ss_pred             eEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccH
Confidence            99999999 578999999864    4899999999998876432    23899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++|++++||+|+|||+.|                 +|..+.+++   ||||+||++|||||
T Consensus       194 ~~~l~l~Rdla~r~n~~~-----------------~p~~l~~~~---l~gL~dG~~KMSKS  234 (690)
T 3p0j_A          194 RKVNMLAREYCDLIGRKL-----------------KPVILSHHM---LAGLKQGQAKMSKS  234 (690)
T ss_dssp             HHHHHHHHHHHHHTTCCC-----------------CCEEEEBCC---CCCSSTTCSSCBTT
T ss_pred             HHHHHHHHHHHHHhCCCC-----------------CceEeecCe---eecCCCCCcCCCCC
Confidence            999999999999999533                 366666665   99999998999998

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=100.00  E-value=1.2e-46  Score=362.85  Aligned_cols=180  Identities=17%  Similarity=0.196  Sum_probs=159.6

Q ss_pred             CCCceEEEeecCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~-i~~~~~LQ~--g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+||+|||++|||||+++ +.+|  ||+  ++.++|+|+|+|+++++ .+++++++++++++++|+|+|+||+|
T Consensus        80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k  157 (386)
T 3hzr_A           80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK  157 (386)
T ss_dssp             TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred             CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            568999999999999999999998 4666  898  67889999999999984 79999999999999999999999999


Q ss_pred             eEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh--------cC-CCEEE
Q 023084          152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL--------YQ-SDFVP  221 (287)
Q Consensus       152 t~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~--------~~-adlvp  221 (287)
                      +.||+||+|++        .+...+.+|.|+++|+++.++++ .+++++|+|+||+||||||++        ++ +|+||
T Consensus       158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp  229 (386)
T 3hzr_A          158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL  229 (386)
T ss_dssp             EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred             eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence            99999999976        34456678999999999988776 467999999999999998773        55 99999


Q ss_pred             eeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       222 vG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ||.||++|++++||+|+|||                  +++|..+.+++   |||| ||.+|||||
T Consensus       230 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~~~---l~gL-dG~~KMSKS  273 (386)
T 3hzr_A          230 DSIKNVQFHSIIDQIATTLN------------------FIQPTVLFHKM---VPLL-SGVTKFDIP  273 (386)
T ss_dssp             EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECC---CCCT-TCTTCCCCC
T ss_pred             cccchHHHHHHHHHHHHHcC------------------CCCceEeecCe---eeCC-CCCCccCcC
Confidence            99999999999999999998                  56787776665   9999 676699998

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.6e-46  Score=366.56  Aligned_cols=185  Identities=15%  Similarity=0.161  Sum_probs=164.0

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C--------CCHHHHHHHHHHH---HHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAI  141 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~--------~d~~~i~~~~~~~---i~~  141 (287)
                      ++++++|+||+|||+ +||||+++ +.+|++||+ ||+++|+|||+||+|+ |        .+++++++|++++   ++.
T Consensus        30 ~~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~  108 (432)
T 2jan_A           30 RGPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLER  108 (432)
T ss_dssp             HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence            357899999999996 99999775 679999999 8999999999999998 5        6789999999766   677


Q ss_pred             HHHcCCCCCceEEEEccchhh-hhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---
Q 023084          142 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---  215 (287)
Q Consensus       142 ~lA~GiDp~kt~i~~qS~~~~-~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~---  215 (287)
                      |+++|+||+|+.||+||+|.+ +..+.|+  +++.+++++|.|+.+||++.   ..+++++|+|+||+||||||++|   
T Consensus       109 ~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~  185 (432)
T 2jan_A          109 FVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRR  185 (432)
T ss_dssp             HSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999976 4577787  89999999999999998875   23678999999999999999999   


Q ss_pred             -CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       216 -~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                       ++|+||||.||++|++++||+|+|||+                  ..|..+..|+   |||+ || +|||||
T Consensus       186 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~pl---L~~l-dG-~KMSKS  235 (432)
T 2jan_A          186 HGCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTVPL---VTAA-DG-TKFGKS  235 (432)
T ss_dssp             HCCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEECCC---CBCT-TS-CBTTBC
T ss_pred             CCCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccccc---ccCC-Cc-CcCCCC
Confidence             999999999999999999999999983                  2455566666   9999 88 599998

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=100.00  E-value=2.2e-46  Score=357.89  Aligned_cols=185  Identities=20%  Similarity=0.200  Sum_probs=149.5

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL  143 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+||+|||+ |||||+++ +.+|++||+ |++++|+|||+||+|+ |.         +++++++++++++++|+
T Consensus        44 g~~~~vy~G~~PTg~sLHLGhl~~-l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~  122 (356)
T 2pid_A           44 SFPQTIYCGFDPTADSLHVGHLLA-LLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLE  122 (356)
T ss_dssp             --CCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence            356899999999997 99999765 679999999 8999999999999998 42         68999999999999999


Q ss_pred             HcCCCCCc-----------eEEEEccchhhhhHHHHHH---hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHh
Q 023084          144 ACGIDNSK-----------ASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA  209 (287)
Q Consensus       144 A~GiDp~k-----------t~i~~qS~~~~~~el~w~L---~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQa  209 (287)
                      |+ +||++           ++||+||+|..+.++.|.+   +..+++++|.++.+||.+.+.  .+++++|+|+||+|||
T Consensus       123 a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQA  199 (356)
T 2pid_A          123 AL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQA  199 (356)
T ss_dssp             HH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHH
T ss_pred             Hh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHH
Confidence            99 88854           9999999997665566664   458999998888888765432  2578999999999999


Q ss_pred             hhhhhc----CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCC
Q 023084          210 SDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVL  285 (287)
Q Consensus       210 ADIl~~----~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMS  285 (287)
                      |||++|    ++|+||||.||++|++++||+|+|||+                  .+|..+..|+   |||| || +|||
T Consensus       200 aDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~------------------~~~~~l~~pl---l~~l-dG-~KMS  256 (356)
T 2pid_A          200 YDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG------------------EDVFGITVPL---ITST-TG-AKLG  256 (356)
T ss_dssp             HHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS------------------CCCEEEEECC---CC----------
T ss_pred             HHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccccc---ccCC-Cc-cccc
Confidence            999999    999999999999999999999999983                  2455566666   9999 88 5999


Q ss_pred             CC
Q 023084          286 TI  287 (287)
Q Consensus       286 KS  287 (287)
                      ||
T Consensus       257 KS  258 (356)
T 2pid_A          257 KS  258 (356)
T ss_dssp             --
T ss_pred             CC
Confidence            98

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.6e-46  Score=361.56  Aligned_cols=180  Identities=17%  Similarity=0.230  Sum_probs=159.5

Q ss_pred             CCCceEEEeecCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084           76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        76 ~~~~~iytGi~PTG-~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      ++++++|+|++||| .+|||||++++ .+|  ||+  |+.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus        99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~  176 (406)
T 3tze_A           99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK  176 (406)
T ss_dssp             TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred             CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            56899999999998 79999999984 566  888  7888999999999865 67999999999999999999999999


Q ss_pred             ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhh--------hcCCCEEE
Q 023084          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP  221 (287)
Q Consensus       151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl--------~~~adlvp  221 (287)
                      |+.||.||+|++        .+..++.+|.|+.+|+++.++.+ .+++++|+|+||+|||||++        .+++|+||
T Consensus       177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp  248 (406)
T 3tze_A          177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP  248 (406)
T ss_dssp             GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred             ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence            999999999975        23345678999999999988876 36799999999999999965        46799999


Q ss_pred             eeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCC-CCCCCC
Q 023084          222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKVLTI  287 (287)
Q Consensus       222 vG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~-~KMSKS  287 (287)
                      ||.||++|++++||+|+|||                  +++|..+++++   |||| ||. +|||||
T Consensus       249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~~---l~gL-dG~~~KMSKS  293 (406)
T 3tze_A          249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYVSL---LPDL-KGVNRKMSAS  293 (406)
T ss_dssp             EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECC---CCCT-TSCCCCSSCS
T ss_pred             eccchHHHHHHHHHHHHHcC------------------CCCceeeccCc---ccCC-CCCCcCCCCC
Confidence            99999999999999999998                  67899887776   9999 675 699998

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=100.00  E-value=5.7e-46  Score=362.81  Aligned_cols=181  Identities=16%  Similarity=0.218  Sum_probs=152.9

Q ss_pred             CCCceEEEeecCC-CcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecC-C-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084           76 SVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~-~-~d~~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      ++++++|+||+|| |.||||||++++ ...+||+  ||.++|+|||+||+++ + .+++.+++++++++++|+|+|+||+
T Consensus       100 g~~~~vy~G~dPTag~LHLGh~v~~~-~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~  178 (432)
T 2ip1_A          100 GKPFFLYTGRGPSSDSMHLGHMIPFV-FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK  178 (432)
T ss_dssp             TCCCEEEEEECCCSSCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred             CCCeEEEEeecCCCCCccHHHHHHHH-HHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4588999999999 899999999976 3334887  8899999999999887 3 5889999999999999999999999


Q ss_pred             ceEEEEccchh--hhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-----------cC
Q 023084          151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ  216 (287)
Q Consensus       151 kt~i~~qS~~~--~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-----------~~  216 (287)
                      |+.||+||+|+  .+.++.|.         ++||+++++++++++ .+++++|+|+||+||||||++           ++
T Consensus       179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~  249 (432)
T 2ip1_A          179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT  249 (432)
T ss_dssp             GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred             ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence            99999999997  67777773         569999999888764 467899999999999999999           57


Q ss_pred             CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       217 adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|+||||.||++|++++||+|+|||                  |++|+.+++++   ||||+++++|||||
T Consensus       250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~l---l~gLdG~~~KMSKS  299 (432)
T 2ip1_A          250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHSRF---FPALQGSTTKMSAS  299 (432)
T ss_dssp             CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEECC---CCCTTC--------
T ss_pred             ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecccc---ccCCCCCccccCCC
Confidence            9999999999999999999999998                  57898887776   99994334799998

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=100.00  E-value=1.5e-45  Score=359.83  Aligned_cols=186  Identities=18%  Similarity=0.217  Sum_probs=151.4

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+||+|||. +|||||++ +.+|++||+ ||+++|+|||+||+|+ |         .+++++++++.++.+.+.
T Consensus        35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~  113 (432)
T 1h3f_A           35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG  113 (432)
T ss_dssp             CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred             CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence            568899999999996 99999995 689999999 8999999999999998 4         235778877777666554


Q ss_pred             HcCCC--CCceEEEEccchhhhhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCE
Q 023084          144 ACGID--NSKASVFVQSHVRAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF  219 (287)
Q Consensus       144 A~GiD--p~kt~i~~qS~~~~~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adl  219 (287)
                       +|+|  |+|++||+||+|.++..+.|.  +.+.++++++.+..+|+.+...  .+++++|+|+||+||||||++|++|+
T Consensus       114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l  190 (432)
T 1h3f_A          114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV  190 (432)
T ss_dssp             -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred             -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence             8899  999999999999776555555  4889999998888888877643  26789999999999999999999999


Q ss_pred             EEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       220 vpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ||||.||++|++++||++++||.                  ..|..+..|+   |||| ||++|||||
T Consensus       191 ~~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~pl---l~gl-dG~~KMSKS  236 (432)
T 1h3f_A          191 EMGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLMPL---LVGL-DGREKMSKS  236 (432)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEECC---CBCT-TSSSBCCGG
T ss_pred             EEechHHHHHHHHHHHHHHHhCC------------------CCceEeeccc---ccCC-CCccccCcC
Confidence            99999999999999999999972                  2345555566   9999 897899998

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=100.00  E-value=1.1e-45  Score=354.55  Aligned_cols=184  Identities=22%  Similarity=0.163  Sum_probs=153.1

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS  150 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~---~--~i~~~lA~GiDp~  150 (287)
                      ++++||+||+|||.+|||||+++++.|..+|.|++++|+|+|+||+|+ +.++.++.++..   +  +.+.|+|+|+||+
T Consensus        34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~  113 (372)
T 1n3l_A           34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE  113 (372)
T ss_dssp             SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred             CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence            467999999999999999999999877766779999999999999997 667777655443   2  3335799999999


Q ss_pred             ceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccch
Q 023084          151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK  227 (287)
Q Consensus       151 kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~  227 (287)
                      ++.||+||+|+   ++.++.|.++|.+|+.+++++.+  .+.+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus       114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~--~v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~  189 (372)
T 1n3l_A          114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA--EVVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR  189 (372)
T ss_dssp             TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred             hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh--hhhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence            99999999995   78888999999999999888632  1111 2 2578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|++++||++++|+                  +++|..++.++   |||| || +|||||
T Consensus       190 ~~~~l~rdl~~r~~------------------~~~p~~l~~pl---l~gl-dG-~KMSKS  226 (372)
T 1n3l_A          190 KIFTFAEKYLPALG------------------YSKRVHLMNPM---VPGL-TG-SKMSSS  226 (372)
T ss_dssp             HHHHHHHHHGGGGT------------------CCCCEEEEECC---CCCS-SC-C-----
T ss_pred             HHHHHHHHHHHHcC------------------CCCCEEEecCc---cCCC-Cc-ccccCC
Confidence            99999999999996                  56799998887   9999 78 599998

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=100.00  E-value=4.5e-46  Score=362.27  Aligned_cols=184  Identities=15%  Similarity=0.198  Sum_probs=155.0

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHH---HH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AA  140 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~---i~  140 (287)
                      ++++++|+||+|||+ +|||||++ +.+|++||+ ||+++++|||+||+|+ |.         +++++++|++++   ++
T Consensus        28 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~  106 (419)
T 2ts1_A           28 EERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLG  106 (419)
T ss_dssp             HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHH
Confidence            357899999999999 99999996 679999999 8999999999999998 53         899999999776   55


Q ss_pred             HHHHcCCCCCceEEEEccchhhhhHHHHHHh---ccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc--
Q 023084          141 IYLACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (287)
Q Consensus       141 ~~lA~GiDp~kt~i~~qS~~~~~~el~w~L~---~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~--  215 (287)
                      .|+++|+||+|+.||.||+|+.+..+.|.+.   ..+++++|.+.   ..++++.+ +++++|+|+||+||||||++|  
T Consensus       107 ~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~---~~~k~r~~-~~is~~ef~YPlLQaaDil~l~~  182 (419)
T 2ts1_A          107 RFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK---ESVQSRIE-TGISFTEFSYMMLQAYDFLRLYE  182 (419)
T ss_dssp             TSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTS---HHHHTTTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhcc---chhhhccC-CCcchHHHHHHHHHHHHHHHHhc
Confidence            6778999999999999999987655566554   56776655544   45544553 678999999999999999999  


Q ss_pred             --CCCEEEeeccchHHHHHHHHHHHHH-hhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          216 --QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       216 --~adlvpvG~DQ~~hi~LaRdla~r~-n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                        ++|+||||.||++|++++||+|+|| |.                  ..|..+..|+   ||++ || +|||||
T Consensus       183 ~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~~lt~pl---l~~l-dG-~KMSKS  234 (419)
T 2ts1_A          183 TEGCRLQIGGSDQWGNITAGLELIRKTKGE------------------ARAFGLTIPL---VTKA-DG-TKFGKT  234 (419)
T ss_dssp             HHCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEECC---CCCT-TS-CCTTCC
T ss_pred             cCCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeeccccc---ccCC-Cc-ccccCC
Confidence              9999999999999999999999999 73                  2455566676   9999 89 599998

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=100.00  E-value=1e-45  Score=347.65  Aligned_cols=178  Identities=24%  Similarity=0.336  Sum_probs=156.9

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      ++++++|+||+|||+||||| ++++.+|++||+ |++++|+|||+||++++ ++++++++++++++++|+|+|+|   +.
T Consensus        26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~  101 (314)
T 2zp1_A           26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK  101 (314)
T ss_dssp             SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred             CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence            56889999999999999999 666889999999 89999999999999985 48999999999999999999998   78


Q ss_pred             EEEccchhhh---hHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084          154 VFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (287)
Q Consensus       154 i~~qS~~~~~---~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi  230 (287)
                      |++||+|+.+   +++.|.++|.+++++|+|+.+|+.+.   . +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus       102 ~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~  177 (314)
T 2zp1_A          102 YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH  177 (314)
T ss_dssp             EEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred             EEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence            9999999754   44445599999999999999876542   2 224999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +|+||+++                      ++|..+.+++   |||| +|++|||||
T Consensus       178 ~l~R~i~~----------------------~~~~~~~~~~---l~~l-~G~~KMSKS  208 (314)
T 2zp1_A          178 MLARELLP----------------------KKVVCIHNPV---LTGL-DGEGKMSSS  208 (314)
T ss_dssp             HHHHHHSS----------------------SCCEEEEECC---CBCT-TSSSBCCTT
T ss_pred             HHHHHhcC----------------------CCcEEeeccc---cccC-CcccccCCC
Confidence            99999875                      1467777676   9999 587899998

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=100.00  E-value=4.4e-45  Score=355.49  Aligned_cols=183  Identities=16%  Similarity=0.170  Sum_probs=164.5

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL  143 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+||+|||+ +|||||++ +.+|++||+ ||+++|+|||+||+|+ |.         +++++++|++++.++++
T Consensus        30 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~  108 (420)
T 1jil_A           30 KEQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMH  108 (420)
T ss_dssp             HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHH
Confidence            357899999999999 99999996 679999999 8999999999999998 53         89999999999999999


Q ss_pred             HcCCCC---CceEEEEccchh-hhhHHHHHH--hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc--
Q 023084          144 ACGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (287)
Q Consensus       144 A~GiDp---~kt~i~~qS~~~-~~~el~w~L--~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~--  215 (287)
                      ++ |||   +|+.+|.||+|. ++.++.|+.  ++.+++++|.++.+||.+.   + +++++|+|+||+||||||++|  
T Consensus       109 ~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~  183 (420)
T 1jil_A          109 NI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNR  183 (420)
T ss_dssp             HH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhc
Confidence            99 998   999999999996 678999985  7999999999998887654   2 678999999999999999999  


Q ss_pred             --CCCEEEeeccchHHHHHHHHHHHHH-hhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          216 --QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       216 --~adlvpvG~DQ~~hi~LaRdla~r~-n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                        ++|+||||.||++|++++||+|+|| |.                  ..|..+..|+   |||+ || +|||||
T Consensus       184 ~~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~~l~~pl---l~~l-dG-~KMSKS  235 (420)
T 1jil_A          184 ELNCKIQVGGSDQWGNITSGIELMRRMYGQ------------------TDAYGLTIPL---VTKS-DG-KKFGKS  235 (420)
T ss_dssp             HHCEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------CCCEEEEECC---CBCT-TS-CBTTBC
T ss_pred             cCCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeEeeccc---ccCC-cc-ccccCC
Confidence              9999999999999999999999999 72                  2456666676   9999 88 599998

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-45  Score=355.74  Aligned_cols=186  Identities=20%  Similarity=0.167  Sum_probs=154.0

Q ss_pred             CCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CC-CHHHHHHHH----HHHHHHHHHcCCCC
Q 023084           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDN  149 (287)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~-d~~~i~~~~----~~~i~~~lA~GiDp  149 (287)
                      +++++||+||+|||.||||||+++++.|..+|.|++++|+|+|+||+|+ +. ..+.++.++    +.+.+.|+|+|+||
T Consensus        37 ~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp  116 (394)
T 2dlc_X           37 KRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPI  116 (394)
T ss_dssp             CSCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            4567999999999999999999999899888889999999999999997 43 344555554    34555788999999


Q ss_pred             CceEEEEccch---hhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084          150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (287)
Q Consensus       150 ~kt~i~~qS~~---~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ  226 (287)
                      +++.||+||+|   +++.++.|.++|.+|+++++|+.+  ++.+ . .+++++|+|+||+||||||+++++|+||||.||
T Consensus       117 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~--~~~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ  192 (394)
T 2dlc_X          117 EKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGA--DVVK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQ  192 (394)
T ss_dssp             TTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred             hHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccH--hhhc-c-cCCccceeeechhHhhccHhhhCCCEEecCccH
Confidence            99999999999   568899999999999999998754  2222 2 256899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++|++++||++++||                  +++|..++.++   |||| +|.+|||||
T Consensus       193 ~~~~~l~rdl~~r~~------------------~~~p~~l~~pl---l~gl-~~G~KMSKS  231 (394)
T 2dlc_X          193 RKIFVLAEENLPSLG------------------YKKRAHLMNPM---VPGL-AQGGKMSAS  231 (394)
T ss_dssp             HHHHHHHHHHGGGGT------------------CCCCEEEEECC---CCCC-C--------
T ss_pred             HHHHHHHHHHHHHcC------------------CCCCEEEeccc---ccCC-CCCCcCCCC
Confidence            999999999999998                  56799999887   9999 633699998

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=100.00  E-value=1.5e-45  Score=360.10  Aligned_cols=180  Identities=19%  Similarity=0.262  Sum_probs=158.8

Q ss_pred             CCCceEEEeecCC-CcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084           76 SVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      ++++++|+||+|| |.||||||++++ ...+||+  |+.++|+|||+|+++++ .+++++++++++++++|+|+|+||+|
T Consensus       106 ~~~~~vy~G~dPTag~LHLGh~v~~~-~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k  184 (437)
T 1r6u_A          106 KKPFYLYTGRGPSSEAMHVGHLIPFI-FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK  184 (437)
T ss_dssp             TCCEEEEEEECCCSSCCBHHHHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred             CCCcEEEEcccCCCCCccHHHHHHHH-HHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence            5689999999999 899999999976 2334886  89999999999999985 68899999999999999999999999


Q ss_pred             eEEEEccchhh----hhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-----------c
Q 023084          152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y  215 (287)
Q Consensus       152 t~i~~qS~~~~----~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-----------~  215 (287)
                      +.||+||+|+.    +.++.|         +|+||+++++++++++ .+++++|+|+||+||||||++           +
T Consensus       185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~  255 (437)
T 1r6u_A          185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD  255 (437)
T ss_dssp             EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred             eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence            99999999974    555544         5668999999888765 467899999999999999999           7


Q ss_pred             CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCC-CCCCCCC
Q 023084          216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKVLTI  287 (287)
Q Consensus       216 ~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg-~~KMSKS  287 (287)
                      ++|+||||.||++|++++||+|+|||                  |++|..+.+++   |||| || ++|||||
T Consensus       256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~pl---l~gL-dG~~~KMSKS  306 (437)
T 1r6u_A          256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHSTF---FPAL-QGAQTKMSAS  306 (437)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEECC---CEET-TEEEEECCTT
T ss_pred             CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeeccc---ccCC-CCCccccCCC
Confidence            88999999999999999999999998                  57898887776   9999 56 3699998

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=100.00  E-value=4.2e-45  Score=360.51  Aligned_cols=179  Identities=20%  Similarity=0.314  Sum_probs=157.5

Q ss_pred             CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      ++++++|+||+|| |.||||||++++ .+|  ||+  ||.++|+|||+|+++++ .+++++++++++++++|+|+|+||+
T Consensus       153 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~  230 (477)
T 1r6t_A          153 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN  230 (477)
T ss_dssp             TCCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4689999999999 899999999987 455  886  89999999999999984 6889999999999999999999999


Q ss_pred             ceEEEEccchhh----hhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-----------
Q 023084          151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------  214 (287)
Q Consensus       151 kt~i~~qS~~~~----~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-----------  214 (287)
                      |+.||+||+|+.    +.++.|         +|+|++++++++++++ .+++++|+|+||+||||||++           
T Consensus       231 k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~  301 (477)
T 1r6t_A          231 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT  301 (477)
T ss_dssp             SEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred             ceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhcccc
Confidence            999999999974    555554         5667788888777664 367899999999999999999           


Q ss_pred             cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCC-CCCCCCC
Q 023084          215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKVLTI  287 (287)
Q Consensus       215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg-~~KMSKS  287 (287)
                      +++|+||||.||++|++++||+|+|||                  |++|..+++++   |||| || ++|||||
T Consensus       302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~pl---l~gL-dG~~~KMSKS  353 (477)
T 1r6t_A          302 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHSTF---FPAL-QGAQTKMSAS  353 (477)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEECC---CEET-TEEEEECCTT
T ss_pred             CCceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeeccc---ccCC-CCCccccCCC
Confidence            578999999999999999999999998                  56898887776   9999 56 3699998

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=100.00  E-value=1.8e-44  Score=348.54  Aligned_cols=198  Identities=17%  Similarity=0.159  Sum_probs=160.6

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+||+|||+ ||||||++ +.+|++||+ ||+++|+|||+||+|+ |         .+++++++|++++.++++
T Consensus        62 ~~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~  140 (392)
T 1y42_X           62 TRRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLK  140 (392)
T ss_dssp             HCCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHH
Confidence            347899999999999 99999996 679999999 8999999999999998 4         267889999999988888


Q ss_pred             HcC-----------CC---CCceEEEEccch-hhhhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchH
Q 023084          144 ACG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV  206 (287)
Q Consensus       144 A~G-----------iD---p~kt~i~~qS~~-~~~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPv  206 (287)
                      ++|           +|   |+++.||.||+| +++..+.|+  +++.++++++.+..+||.+...  .+++++|+|+||+
T Consensus       141 a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPl  218 (392)
T 1y42_X          141 KLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPI  218 (392)
T ss_dssp             HHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHH
T ss_pred             HHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHH
Confidence            765           45   789999999997 677888888  8889998876555555543221  3678999999999


Q ss_pred             HHhhhhhhc----CCCEEEeeccchHHHHHHHHHHHHHhhhhCC--c---cccccCCCCCcccCCCceecCCCCcccccC
Q 023084          207 LMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSL  277 (287)
Q Consensus       207 LQaADIl~~----~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~--~---~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL  277 (287)
                      ||||||+++    ++|+||||.||++|++++||+|+|||+.|+.  +   +.+++|      +.+|..+.+|+   ||||
T Consensus       219 LQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~pl---l~~l  289 (392)
T 1y42_X          219 MQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTVPL---LTDS  289 (392)
T ss_dssp             HHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEECCC---CBCT
T ss_pred             HHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccccc---CcCC
Confidence            999999987    6999999999999999999999999987731  0   112222      34566676676   9999


Q ss_pred             CCCCCCCCCC
Q 023084          278 TDGLSKVLTI  287 (287)
Q Consensus       278 ~dg~~KMSKS  287 (287)
                       || +|||||
T Consensus       290 -dG-~KMSKS  297 (392)
T 1y42_X          290 -SG-AKFGKS  297 (392)
T ss_dssp             -TC-CBTTBC
T ss_pred             -ch-hhccCC
Confidence             88 599998

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=100.00  E-value=1.7e-44  Score=353.43  Aligned_cols=181  Identities=22%  Similarity=0.320  Sum_probs=157.2

Q ss_pred             CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCC
Q 023084           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDN  149 (287)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~~--~d~~~i~~~~~~~i~~~lA~GiDp  149 (287)
                      ++++++|+||+|| |.||||||++++ .+|  ||+  ++.++|+|+|+|+++.+  .+++++++++++++++|+|+|+||
T Consensus        89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDp  166 (451)
T 3foc_A           89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDP  166 (451)
T ss_dssp             TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred             CCCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            4688999999999 889999999987 555  898  67789999999999863  699999999999999999999999


Q ss_pred             CceEEEEccchhh---hhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCC---------
Q 023084          150 SKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS---------  217 (287)
Q Consensus       150 ~kt~i~~qS~~~~---~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~a---------  217 (287)
                      +|+.||+||+|++   +.++.|.+++.+|++++.+...|        .+++++|+|+||+||||||+++..         
T Consensus       167 ekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f--------~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp  238 (451)
T 3foc_A          167 DKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF--------SNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVP  238 (451)
T ss_dssp             GGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC--------CSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCB
T ss_pred             CceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhccc--------CCCCchHHHhhHHHHHHHHHHhhcCCCCccccc
Confidence            9999999999964   67888889989998887776543        257899999999999999984433         


Q ss_pred             ---------------------------------C-----------------EEEeeccchHHHHHHHHHHHHHhhhhCCc
Q 023084          218 ---------------------------------D-----------------FVPVGEDQKQHLELTRELAERVNYLYGGR  247 (287)
Q Consensus       218 ---------------------------------d-----------------lvpvG~DQ~~hi~LaRdla~r~n~~~g~~  247 (287)
                                                       |                 +||||+||++|+|++||+|++||      
T Consensus       239 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------  312 (451)
T 3foc_A          239 LPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------  312 (451)
T ss_dssp             CC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT------
T ss_pred             cccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC------
Confidence                                             2                 99999999999999999999998      


Q ss_pred             cccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       248 ~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                                  +++|.++++++   ||||+++++|||||
T Consensus       313 ------------~~~p~~~~~~~---l~gLdG~~~KMSKS  337 (451)
T 3foc_A          313 ------------HPKNAYLLGKF---LPGLQGSGTKMSAS  337 (451)
T ss_dssp             ------------SCCCEEEEECC---CCBTTBTTCCCCTT
T ss_pred             ------------CCCCeeecCCc---ccCCCCCCCccCCC
Confidence                        56788877665   99995445799998

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=100.00  E-value=1.9e-44  Score=348.62  Aligned_cols=180  Identities=18%  Similarity=0.262  Sum_probs=149.1

Q ss_pred             CCCceEEEeecCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084           76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        76 ~~~~~iytGi~PTG-~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      ++++++|+|++||| .||||||++++ .+|  ||+  ++.++|+|+|+|++++ +.+++++++++++++++|+|+|+||+
T Consensus        76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~  153 (395)
T 3i05_A           76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE  153 (395)
T ss_dssp             TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            56899999999999 69999999984 455  998  6778889999987766 67999999999999999999999999


Q ss_pred             ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhh--------hhhhcC----C
Q 023084          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S  217 (287)
Q Consensus       151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaA--------DIl~~~----a  217 (287)
                      |+.||.||+|.+   . |    ...+.+|.|+.+++++.++.+ .+++++|+|+||+||||        ||+.++    +
T Consensus       154 kt~i~~ns~~~~---~-~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~  225 (395)
T 3i05_A          154 LTFIFRDFDYMG---C-M----YRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF  225 (395)
T ss_dssp             SEEEEEHHHHTT---T-S----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred             ceEEEEcCHHHH---H-H----HHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence            999999999975   1 1    133567889999999988775 46799999999999999        566788    9


Q ss_pred             CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCC-CCCCCC
Q 023084          218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKVLTI  287 (287)
Q Consensus       218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~-~KMSKS  287 (287)
                      |+||||.||++|++++||+|+|||                  +++|..+.+++   |||| ||. +|||||
T Consensus       226 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~~---l~gL-dG~~~KMSKS  274 (395)
T 3i05_A          226 CLIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHSKF---FPGL-SGPKGKMSSS  274 (395)
T ss_dssp             EEEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEECC---CCCC-----------
T ss_pred             eEEEeccchHHHHHHHHHHHHHcC------------------CCCceeecccc---ccCC-CCCcccCCCC
Confidence            999999999999999999999998                  46788887776   9999 564 799998

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=100.00  E-value=3.2e-44  Score=346.75  Aligned_cols=180  Identities=19%  Similarity=0.290  Sum_probs=145.2

Q ss_pred             CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC--CCCHHHHHHHHHHHHHHHHHcCCCC
Q 023084           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN  149 (287)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~--~~d~~~i~~~~~~~i~~~lA~GiDp  149 (287)
                      ++++++|+|++|| |.||||||++++ .+|  ||+  ++.++|+|||+|+.+.  +.+++++++++++++++|+|+|+||
T Consensus        72 g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp  149 (393)
T 3hv0_A           72 GELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDP  149 (393)
T ss_dssp             TCCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred             CCCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            4578999999999 689999999987 455  998  5678999999999654  4699999999999999999999999


Q ss_pred             CceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-------c-C---C
Q 023084          150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---S  217 (287)
Q Consensus       150 ~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-------~-~---a  217 (287)
                      +|+.||+||+|.+.   +     ..++.+|.|+.+++++.++.+ .+++++|+|+||+||||||+.       + +   +
T Consensus       150 ~kt~i~~ns~~~~~---~-----~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~  221 (393)
T 3hv0_A          150 ELTFIFTNLEYIAE---L-----YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH  221 (393)
T ss_dssp             TTEEEEEHHHHHHH---H-----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCC
T ss_pred             cceEEEECCHHHHH---H-----HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCc
Confidence            99999999999641   1     223446778888888877765 467999999999999999963       2 3   4


Q ss_pred             CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCC-CCCCCC
Q 023084          218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKVLTI  287 (287)
Q Consensus       218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~-~KMSKS  287 (287)
                      |+||||.||++|++++||+|+|||                  +++|..+++++   |||| ||. +|||||
T Consensus       222 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~~---l~gL-dG~~~KMSKS  270 (393)
T 3hv0_A          222 CLVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHSIF---LPSL-QGSQTKMSAS  270 (393)
T ss_dssp             EEEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEECC---CCC------------
T ss_pred             eecccccchHHHHHHHHHHHHHcC------------------CCCceeeccCc---ccCC-CCCCcCCCCC
Confidence            789999999999999999999998                  57888887776   9999 564 799998

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=3.5e-34  Score=293.21  Aligned_cols=179  Identities=12%  Similarity=0.097  Sum_probs=145.7

Q ss_pred             CCCCCceEEEeecCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEecceeecC-C--CCHHHHHHHHHHHHHHHHHcCC
Q 023084           74 SSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGI  147 (287)
Q Consensus        74 ~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ-~--g~~~~ilIaD~hA~t~-~--~d~~~i~~~~~~~i~~~lA~Gi  147 (287)
                      .-..+..|+++- |||++||||++++++.+.++| .  |++++|+||||||+++ +  .+++++++++.+++++|+|+|+
T Consensus       378 ~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~  456 (690)
T 3p0j_A          378 APAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGL  456 (690)
T ss_dssp             CCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            334566788888 999999999999875477764 4  8899999999999999 4  5899999999999999999999


Q ss_pred             CCCceEEEEccchhhh-hHHHHH----HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEe
Q 023084          148 DNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV  222 (287)
Q Consensus       148 Dp~kt~i~~qS~~~~~-~el~w~----L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpv  222 (287)
                      |+ +++|++||+|... .+++|.    ++..+|++|+.+..         +.+++++|+|+||+||+|||+.+++|++||
T Consensus       457 d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~g  526 (690)
T 3p0j_A          457 PS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHVIS  526 (690)
T ss_dssp             CT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             Cc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEEec
Confidence            97 7999999998532 245664    67788888776543         237789999999999999999999999999


Q ss_pred             eccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCC
Q 023084          223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLT  286 (287)
Q Consensus       223 G~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSK  286 (287)
                      |+||++|++|+||++++++                    +|..+++++   +|+|+++.+||||
T Consensus       527 G~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~~~---~P~L~gp~~~~~~  567 (690)
T 3p0j_A          527 TSLDGHINAFAREYTKERI--------------------DCVQTLEGR---IPALHRPGAAPAV  567 (690)
T ss_dssp             CSTTTTTTHHHHHHTTTCS--------------------EEEECCCCS---SCCSSCCCC----
T ss_pred             ccccHHHHHHHHHHHHhcc--------------------Ccccccccc---cccCCCcccccCC
Confidence            9999999999999999853                    355566665   9999655545444

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=99.44  E-value=5.5e-14  Score=131.17  Aligned_cols=172  Identities=15%  Similarity=0.172  Sum_probs=106.3

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~  163 (287)
                      .|||.+||||+.+++.+|...+. +.++++-|.|.    +  +.....+..+.+.+++.++||+++.. +++||+..+ +
T Consensus        13 sPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D--~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~y   85 (298)
T 1nzj_A           13 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----D--PPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDAY   85 (298)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----C--GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----C--chhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHHH
Confidence            56699999999999999987776 55666678885    2  22345668889999999999999974 799999643 2


Q ss_pred             hHHHH-------HHhccCCHHHHhchhc-HHHHHhh---hC---------------CCCccchhhhchH-HHhhhhhhcC
Q 023084          164 VELMW-------LLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLYQ  216 (287)
Q Consensus       164 ~el~w-------~L~~~~t~~~L~R~~~-~k~~~~~---~~---------------~~~i~~g~~~YPv-LQaADIl~~~  216 (287)
                      .+..-       .+.|.+|..++++.-. |....+.   .+               -++.-.|.+.++. .+.-|.+.++
T Consensus        86 ~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R  165 (298)
T 1nzj_A           86 REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR  165 (298)
T ss_dssp             HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC
T ss_pred             HHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEEC
Confidence            22111       1668999999876410 0000000   00               0011223444444 3555666655


Q ss_pred             -------------------CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccC
Q 023084          217 -------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL  277 (287)
Q Consensus       217 -------------------adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL  277 (287)
                                         .+++.-|.|+..+...-..+.+.++                  ++.|...+.++   |.+.
T Consensus       166 ~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~pl---l~~~  224 (298)
T 1nzj_A          166 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLPL---ALNP  224 (298)
T ss_dssp             TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECB---CCC-
T ss_pred             CCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEeee---eECC
Confidence                               4455559999988877777778775                  45688777776   7787


Q ss_pred             CCCCCCCCCC
Q 023084          278 TDGLSKVLTI  287 (287)
Q Consensus       278 ~dg~~KMSKS  287 (287)
                       +| +||||+
T Consensus       225 -~g-~KLSKR  232 (298)
T 1nzj_A          225 -QG-AKLSKQ  232 (298)
T ss_dssp             ----------
T ss_pred             -CC-Cccccc
Confidence             77 599996

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=99.37  E-value=7.1e-13  Score=131.42  Aligned_cols=178  Identities=16%  Similarity=0.143  Sum_probs=120.1

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEEEc
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ  157 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-------~i~~q  157 (287)
                      .|||.|||||+..++.+|...+. |.++++-|.|.    ++  .....+..+.+.+++.++||+||..       .+|+|
T Consensus        14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~Q   87 (498)
T 2ja2_A           14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQ   87 (498)
T ss_dssp             CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBG
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCeee
Confidence            56799999999999999987777 54444448887    31  2346678889999999999999974       58999


Q ss_pred             cchhhhhHHHH--------HHhccCCHHHHhchh---------cHH---------HHHhh--hCCC----------Cc--
Q 023084          158 SHVRAHVELMW--------LLSSATPIGWLNKMI---------QFK---------EKSHK--AGGE----------NV--  197 (287)
Q Consensus       158 S~~~~~~el~w--------~L~~~~t~~~L~R~~---------~~k---------~~~~~--~~~~----------~i--  197 (287)
                      |+..+....+.        .+.|.+|-.+|+++-         .|.         +..+.  .|..          .+  
T Consensus        88 S~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~  167 (498)
T 2ja2_A           88 SQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAW  167 (498)
T ss_dssp             GGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEE
T ss_pred             ecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEE
Confidence            99754322111        167999999986542         011         11010  0100          00  


Q ss_pred             ---cchhhhchHHHhhhhhhcC-------------------CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCC
Q 023084          198 ---GVALLTYPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR  255 (287)
Q Consensus       198 ---~~g~~~YPvLQaADIl~~~-------------------adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~  255 (287)
                         =.|.+.|+.-+.-|++.++                   .++|.-|.|+..+...-+.+.+.|+. +|.      |  
T Consensus       168 ~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~------g--  238 (498)
T 2ja2_A          168 NDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGV------A--  238 (498)
T ss_dssp             EETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTS------C--
T ss_pred             EecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcC------C--
Confidence               1234555555556666554                   55555699999999999999999975 531      1  


Q ss_pred             CCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          256 GGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       256 ~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                          ++.|+..+.++   |.+. +| +||||+
T Consensus       239 ----~~~P~~~h~pl---il~~-~g-~KLSKR  261 (498)
T 2ja2_A          239 ----ERIPKFAHLPT---VLGE-GT-KKLSKR  261 (498)
T ss_dssp             ----CCCCEEEEECC---EECS-SS-SBCCTT
T ss_pred             ----CCCCeEEEeee---eECC-CC-Cccccc
Confidence                46788887777   8887 77 599996

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=99.35  E-value=8.6e-13  Score=129.97  Aligned_cols=173  Identities=17%  Similarity=0.140  Sum_probs=118.8

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------EEEc
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ  157 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~-------i~~q  157 (287)
                      .|||.+||||+..++.+|...+. |.++++-|.|.    ++  .....+..+.+.+++.++||+||...       .|+|
T Consensus         9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q   82 (468)
T 1j09_A            9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ   82 (468)
T ss_dssp             CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence            57799999999999999987766 55566667776    31  13355678889999999999999742       4999


Q ss_pred             cchhh-hhHHHHH-------HhccCCHHHHhchh-------------cHHHHHhhh--CC---------C--Cc-----c
Q 023084          158 SHVRA-HVELMWL-------LSSATPIGWLNKMI-------------QFKEKSHKA--GG---------E--NV-----G  198 (287)
Q Consensus       158 S~~~~-~~el~w~-------L~~~~t~~~L~R~~-------------~~k~~~~~~--~~---------~--~i-----~  198 (287)
                      |+..+ |.+..-.       +.|.+|-.+++++-             +.++..++.  |.         .  .+     -
T Consensus        83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~  162 (468)
T 1j09_A           83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL  162 (468)
T ss_dssp             GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence            99643 2221111       66899999886532             222221111  10         0  01     1


Q ss_pred             chhhhchHHHhhhhhhcCCCEEEe-------------------eccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 023084          199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI  259 (287)
Q Consensus       199 ~g~~~YPvLQaADIl~~~adlvpv-------------------G~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~  259 (287)
                      .|.+.+|..+.-|.+.+++|..|.                   |.|+..+...-..+.+.++                  
T Consensus       163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------  224 (468)
T 1j09_A          163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------  224 (468)
T ss_dssp             TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred             ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence            244677777777777766555555                   9999999999999999886                  


Q ss_pred             cCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          260 FKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       260 f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++.|+..+.++   |.+. +| +||||+
T Consensus       225 ~~~p~~~h~~l---i~~~-~g-~klSKR  247 (468)
T 1j09_A          225 WEAPRFYHMPL---LRNP-DK-TKISKR  247 (468)
T ss_dssp             CCCCEEEEECC---CBCT-TS-CBCCTT
T ss_pred             CCCCeEEEeee---eeCC-CC-Cccccc
Confidence            45687777666   7787 77 599996

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=99.28  E-value=6.1e-13  Score=131.62  Aligned_cols=179  Identities=16%  Similarity=0.167  Sum_probs=117.2

Q ss_pred             eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-----
Q 023084           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-----  153 (287)
Q Consensus        80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~-----  153 (287)
                      +.=..=.|||.+||||+..++.+|...+. +.++++-|.|.    ++  .....+..+.+.+++.++||++|...     
T Consensus        27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~  100 (488)
T 3afh_A           27 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGGD  100 (488)
T ss_dssp             EEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred             eEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence            44444567799999999999999987776 66666667776    31  23466778889999999999999742     


Q ss_pred             --EEEccchhh-hhHHHHH-------HhccCCHHHHhchh--cHHHH--HhhhC---------C-CCc-----cchhhhc
Q 023084          154 --VFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI--QFKEK--SHKAG---------G-ENV-----GVALLTY  204 (287)
Q Consensus       154 --i~~qS~~~~-~~el~w~-------L~~~~t~~~L~R~~--~~k~~--~~~~~---------~-~~i-----~~g~~~Y  204 (287)
                        .|+||+..+ |.+..-.       +.|.+|-.+|+++.  .|...  ....|         + ..+     -.|.+.+
T Consensus       101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~  180 (488)
T 3afh_A          101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEF  180 (488)
T ss_dssp             TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEE
T ss_pred             CCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEee
Confidence              689999643 2221111       55888877776530  01000  00001         0 000     0222333


Q ss_pred             hHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCce
Q 023084          205 PVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP  265 (287)
Q Consensus       205 PvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~  265 (287)
                      +.-+.-|.+.                   .+.++|.-|.|+..+...-..+.+.|+                  ++.|+.
T Consensus       181 ~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~f  242 (488)
T 3afh_A          181 DNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPVF  242 (488)
T ss_dssp             EGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCEE
T ss_pred             cCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCeE
Confidence            3333333333                   467777779999999999999999886                  567888


Q ss_pred             ecCCCCcccccCCCCCCCCCCC
Q 023084          266 LIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       266 l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      .+.|+   |.+. +| +||||+
T Consensus       243 ~H~pl---i~~~-~g-~KLSKR  259 (488)
T 3afh_A          243 MHIPL---ILGS-DR-TPLSKR  259 (488)
T ss_dssp             EEECC---EECT-TS-SBCCTT
T ss_pred             EEEee---eeCC-CC-CcccCc
Confidence            88777   8887 78 599996

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=99.20  E-value=1.3e-10  Score=115.01  Aligned_cols=173  Identities=17%  Similarity=0.178  Sum_probs=115.6

Q ss_pred             ecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084           85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-  162 (287)
Q Consensus        85 i~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-  162 (287)
                      =.|||.+||||+..++.+|...+. +.++++-|.|.    ++  .....+.++.+.+++.++||+++. ..|+||+..+ 
T Consensus         8 PSPtG~lHiG~artal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~~   80 (492)
T 2cfo_A            8 PSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDT----DR--ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLDL   80 (492)
T ss_dssp             CCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----SS--SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHHH
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeC----Cc--cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHHH
Confidence            357799999999999999977665 65666678887    32  233567888999999999999996 5899999543 


Q ss_pred             hhHHHHH-------HhccCCHHHHhchhc----------H---------HHHHhh--hC---------CCC---------
Q 023084          163 HVELMWL-------LSSATPIGWLNKMIQ----------F---------KEKSHK--AG---------GEN---------  196 (287)
Q Consensus       163 ~~el~w~-------L~~~~t~~~L~R~~~----------~---------k~~~~~--~~---------~~~---------  196 (287)
                      +.+..-.       +.|.+|-.+|+.+..          |         .+..+.  .|         ++.         
T Consensus        81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v  160 (492)
T 2cfo_A           81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLV  160 (492)
T ss_dssp             HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETT
T ss_pred             HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecc
Confidence            3222222       568899888765310          1         011000  01         000         


Q ss_pred             --------ccc---------------hhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccC
Q 023084          197 --------VGV---------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG  253 (287)
Q Consensus       197 --------i~~---------------g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g  253 (287)
                              ..+               |..+|=+-=+.|....+.|+|.-|.|+..+-..-..+.+.++            
T Consensus       161 ~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg------------  228 (492)
T 2cfo_A          161 RGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG------------  228 (492)
T ss_dssp             TEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT------------
T ss_pred             eeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC------------
Confidence                    011               333333333344445567788899999999988888888876            


Q ss_pred             CCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       254 ~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                            ++.|+..+.++   |.+. +| +||||+
T Consensus       229 ------~~~P~~~H~pl---il~~-~g-~KLSKr  251 (492)
T 2cfo_A          229 ------ATPPNFAHTPL---ILNS-TG-QKLSKR  251 (492)
T ss_dssp             ------CCCCEEEEECC---EECS-SS-SBCCTT
T ss_pred             ------CCCceEEEeee---EECC-CC-CEeccc
Confidence                  45687777787   8887 78 599997

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.19  E-value=1.5e-12  Score=131.42  Aligned_cols=180  Identities=16%  Similarity=0.177  Sum_probs=114.6

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-----  152 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-----  152 (287)
                      .++=..=.|||.|||||+.+++.+|...+. +.++++-|.|.    ++  .....+....+.+++.++||+||..     
T Consensus       130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG  203 (592)
T 3al0_C          130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG  203 (592)
T ss_dssp             CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence            444444677899999999999999977666 66777778884    32  1345667888999999999999974     


Q ss_pred             --EEEEccchhh-hhHHHHH-------HhccCCHHHHhchh--cHHHH--HhhhC---------C------CCccchhhh
Q 023084          153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI--QFKEK--SHKAG---------G------ENVGVALLT  203 (287)
Q Consensus       153 --~i~~qS~~~~-~~el~w~-------L~~~~t~~~L~R~~--~~k~~--~~~~~---------~------~~i~~g~~~  203 (287)
                        ..|+||+..+ |.+..-.       +.|.+|-.+|++..  .|...  ....|         +      ++.-.|.+.
T Consensus       204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~  283 (592)
T 3al0_C          204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME  283 (592)
T ss_dssp             TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred             CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence              2689999643 2221111       55787776665420  00000  00000         0      001122333


Q ss_pred             chHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCc
Q 023084          204 YPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE  264 (287)
Q Consensus       204 YPvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~  264 (287)
                      ++.-+.-|.+.                   .+.++|.-|.|+..+...-+.+.+.|+                  ++.|+
T Consensus       284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~  345 (592)
T 3al0_C          284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV  345 (592)
T ss_dssp             CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred             eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence            33333333333                   356677779999999998888888775                  45677


Q ss_pred             eecCCCCcccccCCCCCCCCCCC
Q 023084          265 PLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       265 ~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ..+.|+   |.+. +| +||||+
T Consensus       346 ~~hlpl---i~~~-~g-~KLSKR  363 (592)
T 3al0_C          346 FMHIPL---ILGS-DR-TPLSKR  363 (592)
T ss_dssp             CCEECC---CBCT-TS-SBCCTT
T ss_pred             EEEeee---eeCC-CC-Cccccc
Confidence            777676   8887 78 599996

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=98.85  E-value=8.4e-09  Score=101.84  Aligned_cols=180  Identities=15%  Similarity=0.075  Sum_probs=110.5

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-----  152 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-----  152 (287)
                      .+....-.|||.|||||+.+++.+|..-+. +...++-|.|.    ++  ...+.+..+.+.+++.++|++++..     
T Consensus        14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDt----D~--~r~~~~~~~~I~~~l~wlGl~~de~p~~gg   87 (481)
T 2o5r_A           14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDT----DL--ERSEREYEEKLMESLRWLGLLWDEGPDVGG   87 (481)
T ss_dssp             CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCS----SC--CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecC----Cc--cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence            356777789999999999999988865544 44555445554    21  1335567788889999999999863     


Q ss_pred             --EEEEccchhh-hhHHHHH-------HhccCCHHHHhchh---------------------cHHHHHh--hhCC-----
Q 023084          153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI---------------------QFKEKSH--KAGG-----  194 (287)
Q Consensus       153 --~i~~qS~~~~-~~el~w~-------L~~~~t~~~L~R~~---------------------~~k~~~~--~~~~-----  194 (287)
                        ..|+||+..+ +.+..-.       +.|.++-.+++.+-                     .-.+..+  ..|.     
T Consensus        88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR  167 (481)
T 2o5r_A           88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF  167 (481)
T ss_dssp             TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred             CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence              2578999432 2222111       44666665543221                     0000000  0000     


Q ss_pred             ---C-----------------Cccchhh------hchHHHhhhhh---hcCCCEEEeeccchHHHHHHHHHHHHHhhhhC
Q 023084          195 ---E-----------------NVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG  245 (287)
Q Consensus       195 ---~-----------------~i~~g~~------~YPvLQaADIl---~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g  245 (287)
                         .                 ...++-+      -||..+-|+++   ..+.+.|..|.||..|...-.-+.+.++    
T Consensus       168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG----  243 (481)
T 2o5r_A          168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE----  243 (481)
T ss_dssp             ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred             EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence               0                 0001100      04444444333   3589999999999999988888888876    


Q ss_pred             CccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       246 ~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                                    ++.|...+.++   +.+. +| +||||+
T Consensus       244 --------------~~~p~~~H~pl---il~~-~G-~KLSKR  266 (481)
T 2o5r_A          244 --------------KAPPVFAHVST---ILGP-DG-KKLSKR  266 (481)
T ss_dssp             --------------CCCCEEEEECC---EECT-TS-SBCCGG
T ss_pred             --------------CCCCeEEEEee---EECC-CC-CcccCc
Confidence                          45687777676   6675 77 599995

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=98.76  E-value=6.5e-08  Score=95.76  Aligned_cols=179  Identities=18%  Similarity=0.152  Sum_probs=106.1

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF  155 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~  155 (287)
                      +++.=..=.|||.+||||+..++.+|...+. +.+.++-|-|.       |+ ....+.++.+.+++.++||+|+. ..|
T Consensus        25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~i~~dl~wlGl~~d~-~~~   96 (490)
T 4g6z_A           25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT-------DVERSSQEAVDAILEGMAWLGLDYDE-GPY   96 (490)
T ss_dssp             CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred             CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC-------CcccccHHHHHHHHHHHHHcCCCCCC-CCc
Confidence            3444444556699999999999999876665 44555556663       33 34566888999999999999996 479


Q ss_pred             Eccchh-hhhHHHHH-------HhccCCHHHHhchhcH--------------HHH----Hhh----------hC-C--CC
Q 023084          156 VQSHVR-AHVELMWL-------LSSATPIGWLNKMIQF--------------KEK----SHK----------AG-G--EN  196 (287)
Q Consensus       156 ~qS~~~-~~~el~w~-------L~~~~t~~~L~R~~~~--------------k~~----~~~----------~~-~--~~  196 (287)
                      +||+.. .+.+..-.       +.|.+|-.+|+.+-.-              ...    .+.          +. +  ..
T Consensus        97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~  176 (490)
T 4g6z_A           97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT  176 (490)
T ss_dssp             EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred             ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence            999953 23222211       5688998887643210              000    000          00 0  00


Q ss_pred             cc-----chhhh----------------chHHHhh---hhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccccc
Q 023084          197 VG-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL  252 (287)
Q Consensus       197 i~-----~g~~~----------------YPvLQaA---DIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~  252 (287)
                      +.     -|.+.                ||..+-|   |=...+.++|.=|.|...+--.-..+.+.|+           
T Consensus       177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG-----------  245 (490)
T 4g6z_A          177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG-----------  245 (490)
T ss_dssp             EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-----------
T ss_pred             EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-----------
Confidence            00     01111                2222222   2223478999999999888777777777775           


Q ss_pred             CCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       253 g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                             ++.|+..+.|+   |.+- +| +||||.
T Consensus       246 -------~~~P~f~HlpL---i~~~-~g-~KLSKR  268 (490)
T 4g6z_A          246 -------GEVPVYAHLPT---VLNE-QG-EKMSKR  268 (490)
T ss_dssp             -------CCCCEEEEECC---EECT-TS-SBCCTT
T ss_pred             -------CCCCeEEEecc---eeCC-CC-CcccCC
Confidence                   66788888887   7776 77 699995

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=98.62  E-value=1.6e-07  Score=93.31  Aligned_cols=173  Identities=19%  Similarity=0.161  Sum_probs=109.4

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------EEEc
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ  157 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~-------i~~q  157 (287)
                      .|||.+||||+..++.+|..-+. |.++++-|-|.    ++.  ....+..+.+.+++.++||++|...       .|+|
T Consensus        32 sPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt----D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~Q  105 (512)
T 4gri_A           32 SPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT----DQS--RYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQ  105 (512)
T ss_dssp             CSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBG
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccc
Confidence            45699999999999989876655 55555556665    321  2234567788899999999998632       4799


Q ss_pred             cchhh-h---hHHHHH----HhccCCHHHHhchhc-------------------HHHHHhhh--C---------C--CCc
Q 023084          158 SHVRA-H---VELMWL----LSSATPIGWLNKMIQ-------------------FKEKSHKA--G---------G--ENV  197 (287)
Q Consensus       158 S~~~~-~---~el~w~----L~~~~t~~~L~R~~~-------------------~k~~~~~~--~---------~--~~i  197 (287)
                      |+..+ |   .+....    +.|.+|-.++++...                   ..++....  +         +  .++
T Consensus       106 S~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~  185 (512)
T 4gri_A          106 SQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDT  185 (512)
T ss_dssp             GGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred             cchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCc
Confidence            98543 2   222211    668999888764322                   11111100  0         0  000


Q ss_pred             -----cchhhh-----------------chHHHhhhh---hhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccccc
Q 023084          198 -----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL  252 (287)
Q Consensus       198 -----~~g~~~-----------------YPvLQaADI---l~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~  252 (287)
                           -.|.+.                 ||..+=|-+   ...+.++|.-|.|...+--.-.-|.+.|+           
T Consensus       186 ~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg-----------  254 (512)
T 4gri_A          186 SFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK-----------  254 (512)
T ss_dssp             EEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT-----------
T ss_pred             eeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC-----------
Confidence                 011111                 222222211   22478999999999999988888888886           


Q ss_pred             CCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       253 g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                             ++.|+..|.|+   |.+- +| +|+||.
T Consensus       255 -------~~~P~y~H~pl---i~~~-~g-~kLSKR  277 (512)
T 4gri_A          255 -------WKPPIYCHLPM---VMGN-DG-QKLSKR  277 (512)
T ss_dssp             -------CCCCEEEEECC---CBCT-TS-SBCCTT
T ss_pred             -------CCCCeEEecch---hccc-cc-cccCcc
Confidence                   67898888887   8776 77 599995

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=98.61  E-value=2.8e-07  Score=92.30  Aligned_cols=174  Identities=20%  Similarity=0.194  Sum_probs=98.2

Q ss_pred             EEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        81 iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      +.+=|.  |||.+||||+..++.+|...+. +..+++-|-|.       |+ ....+.+..+.+++.++|++|+  +.++
T Consensus        97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~e~~~~I~edL~wLGl~wd--~~~~  167 (553)
T 3aii_A           97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT-------DPRRVDPEAYDMIPADLEWLGVEWD--ETVI  167 (553)
T ss_dssp             CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCTTHHHHHHHHHHHHTCCCS--EEEE
T ss_pred             eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCC--CCcc
Confidence            445555  4599999999999888865554 44555557766       33 3344678889999999999997  5899


Q ss_pred             ccchh-hhhHHHHH-------HhccCCHHHHhch-----------hcHH-------HHHh--------hhC-C---CCcc
Q 023084          157 QSHVR-AHVELMWL-------LSSATPIGWLNKM-----------IQFK-------EKSH--------KAG-G---ENVG  198 (287)
Q Consensus       157 qS~~~-~~~el~w~-------L~~~~t~~~L~R~-----------~~~k-------~~~~--------~~~-~---~~i~  198 (287)
                      ||+.. .+.+..-.       +.|.++-.++...           .+..       ++..        +.. +   .+.+
T Consensus       168 qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~  247 (553)
T 3aii_A          168 QSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPA  247 (553)
T ss_dssp             GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGG
T ss_pred             cccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCC
Confidence            99963 23222222       4578887766421           1111       1110        000 0   0000


Q ss_pred             c----------------hh--hhchHHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 023084          199 V----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG  257 (287)
Q Consensus       199 ~----------------g~--~~YPvLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~  257 (287)
                      +                |-  ..||..+   +.|....+.|+++.|.|...+-..-.-+...++                
T Consensus       248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG----------------  311 (553)
T 3aii_A          248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG----------------  311 (553)
T ss_dssp             GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT----------------
T ss_pred             CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC----------------
Confidence            0                00  1355544   445555789999999999988777666677665                


Q ss_pred             cccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          258 AIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       258 ~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                        ++.|...+.+.   | .+ +| +|||||
T Consensus       312 --~~~P~y~H~~~---L-~~-~g-~KLSKR  333 (553)
T 3aii_A          312 --WEPPEFIHYGR---L-KM-DD-VALSTS  333 (553)
T ss_dssp             --CCCCEEECCCC---B-C---------CH
T ss_pred             --CCCCeEEEeeE---E-ec-CC-ceechh
Confidence              45687776665   6 44 67 499996

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=98.37  E-value=6.3e-07  Score=89.80  Aligned_cols=94  Identities=12%  Similarity=-0.027  Sum_probs=65.0

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV  156 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~  156 (287)
                      .+.=.+=.|||.+||||+..++.+|...+. +..+++-|-|.       |+ ....+....+.+++.++||+++. ..++
T Consensus        27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-------D~~R~~~e~~~~I~edL~wLGl~wde-~~~~   98 (553)
T 1qtq_A           27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVRY   98 (553)
T ss_dssp             CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred             eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CchhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence            344455667799999999999888865554 55555557776       33 33556788899999999999964 4799


Q ss_pred             ccchhh-hhHHHHH-------HhccCCHHHHh
Q 023084          157 QSHVRA-HVELMWL-------LSSATPIGWLN  180 (287)
Q Consensus       157 qS~~~~-~~el~w~-------L~~~~t~~~L~  180 (287)
                      ||+..+ +.+..-.       +.|.++-.+|.
T Consensus        99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~  130 (553)
T 1qtq_A           99 SSDYFDQLHAYAIELINKGLAYVDELTPEQIR  130 (553)
T ss_dssp             GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence            998642 3332222       45788877664

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=98.14  E-value=1.8e-05  Score=82.78  Aligned_cols=94  Identities=13%  Similarity=0.056  Sum_probs=65.2

Q ss_pred             eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (287)
Q Consensus        80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS  158 (287)
                      +.=.+=.|||.+||||+..++.+|...+. +..+++-|-|.    ++  .....+++..+.+++.++||+|+. ..++||
T Consensus        68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~--~R~~~e~~~~IledL~wLGl~wde-~~~~qS  140 (851)
T 2hz7_A           68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NP--ELARQEYVDSIADDLKWLGLDWGE-HFYYAS  140 (851)
T ss_dssp             EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CT--TTCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred             EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence            33346667799999999999888866555 55556567776    32  134567888999999999999965 589999


Q ss_pred             chh-hhhHHHHH-------HhccCCHHHHh
Q 023084          159 HVR-AHVELMWL-------LSSATPIGWLN  180 (287)
Q Consensus       159 ~~~-~~~el~w~-------L~~~~t~~~L~  180 (287)
                      +.. .+.+..-.       +.|.++-.++.
T Consensus       141 er~d~y~e~a~~LI~~G~AY~c~ct~eel~  170 (851)
T 2hz7_A          141 DYFDRYYAYAEQLIRQGDAYVESVSPEELS  170 (851)
T ss_dssp             GGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence            963 33222222       55788877664

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=96.89  E-value=0.0014  Score=65.91  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             ceEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL  119 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i--lIaD~  119 (287)
                      ..-|+|--|+|++||||+.+++  .-+.++.+  |++|++  -|.|+
T Consensus       106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~  152 (592)
T 1iq0_A          106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT  152 (592)
T ss_dssp             EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred             EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            4557788889999999998765  34555555  888865  37776

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=96.03  E-value=0.011  Score=58.35  Aligned_cols=79  Identities=24%  Similarity=0.345  Sum_probs=52.0

Q ss_pred             CceEEEeecCCCcchhhhHHHHHHHHH---HHhc-cCcE-EEEEecceeecC--CC------------C-----------
Q 023084           78 KKRIVSGVQPTGSIHLGNYLGAIKNWI---ALQN-SYET-LFFIVDLHAITL--PY------------D-----------  127 (287)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~vg~i~~~~---~LQ~-g~~~-~ilIaD~hA~t~--~~------------d-----------  127 (287)
                      ..++.+|--|||.+||||...++..++   .+.. |+++ +++-.|+|....  |.            +           
T Consensus        21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~  100 (523)
T 1irx_A           21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH  100 (523)
T ss_dssp             EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred             eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence            356667999999999999998875532   2223 7776 444456654111  00            0           


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCceEEEEccc
Q 023084          128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH  159 (287)
Q Consensus       128 ~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~  159 (287)
                      .+-.+++...+.+++.++||++|   +|.||+
T Consensus       101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se  129 (523)
T 1irx_A          101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE  129 (523)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence            11234577788889999999887   358987

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=95.94  E-value=0.033  Score=54.61  Aligned_cols=76  Identities=5%  Similarity=-0.076  Sum_probs=50.3

Q ss_pred             CCCceEEEe-ecCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEecce---eecC-----CCCHH-HHHHHHHHHHHH
Q 023084           76 SVKKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLH---AITL-----PYDTQ-QLSKATRETAAI  141 (287)
Q Consensus        76 ~~~~~iytG-i~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~ilIaD~h---A~t~-----~~d~~-~i~~~~~~~i~~  141 (287)
                      .+++.|-|. --++|.+||||.++.+.  -+.++++  |++|.+.-+.+|   ++..     ..++. -++++...+.++
T Consensus         8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~   87 (542)
T 3u1f_A            8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC   87 (542)
T ss_dssp             CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            345555555 35789999999987552  2344444  899987766555   2222     12453 355677888899


Q ss_pred             HHHcCCCCCc
Q 023084          142 YLACGIDNSK  151 (287)
Q Consensus       142 ~lA~GiDp~k  151 (287)
                      +.++|++.|.
T Consensus        88 ~~~lgi~~D~   97 (542)
T 3u1f_A           88 FEQMDYSIDY   97 (542)
T ss_dssp             HHHHTCCCSE
T ss_pred             HHHhCCccCc
Confidence            9999999874

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=95.29  E-value=0.12  Score=51.33  Aligned_cols=88  Identities=10%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             CCCCCCCCCceEEEe-ecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHH
Q 023084           70 PVASSSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKAT  135 (287)
Q Consensus        70 ~~~~~~~~~~~iytG-i~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~  135 (287)
                      +..++..+++.|-+. .-|+|.+||||....+  .-+.++++  |++|.+. -.|.|..-.       ..++++ +.++.
T Consensus        19 ~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~   98 (564)
T 3kfl_A           19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVS   98 (564)
T ss_dssp             -----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence            344444445444333 3578999999998765  23455555  8998664 445554211       024433 44566


Q ss_pred             HHHHHHHHHcCCCCCceEEEEccc
Q 023084          136 RETAAIYLACGIDNSKASVFVQSH  159 (287)
Q Consensus       136 ~~~i~~~lA~GiDp~kt~i~~qS~  159 (287)
                      ..+.+++.++||+.|.  ++.-++
T Consensus        99 ~~~~~~~~~lgi~~D~--~~~t~~  120 (564)
T 3kfl_A           99 SEFKQCFQEMNYDMNY--FIRTTN  120 (564)
T ss_dssp             HHHHHHHHHTTCCCSE--EEETTS
T ss_pred             HHHHHHHHHcCCCCCc--cccCCC
Confidence            7788899999999883  555554

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=95.26  E-value=0.14  Score=50.36  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             CceEEEeec--CCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHH
Q 023084           78 KKRIVSGVQ--PTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY  142 (287)
Q Consensus        78 ~~~iytGi~--PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~i~~~  142 (287)
                      +....+|-=  |||.+||||..+++.  -+.++++  |++|.+. -.|.|..-.       ..++++ .++....+.+++
T Consensus        25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l  104 (536)
T 4dlp_A           25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA  104 (536)
T ss_dssp             CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            334445544  459999999987652  2444444  8888654 445543211       024433 444567788899


Q ss_pred             HHcCCCCCceEEEEccc
Q 023084          143 LACGIDNSKASVFVQSH  159 (287)
Q Consensus       143 lA~GiDp~kt~i~~qS~  159 (287)
                      .++|++++  .++.-++
T Consensus       105 ~~lgi~~d--~~~~t~~  119 (536)
T 4dlp_A          105 EVLNSSND--DYIRTSE  119 (536)
T ss_dssp             HHTTCCCS--EEEETTS
T ss_pred             HHcCCCCC--cceeCCC
Confidence            99999988  4555554

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=95.11  E-value=0.093  Score=51.93  Aligned_cols=80  Identities=23%  Similarity=0.365  Sum_probs=48.6

Q ss_pred             CceEEEe-ecCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecceeecC-------CCCHHH-HHHHHHHHHHHHH
Q 023084           78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL  143 (287)
Q Consensus        78 ~~~iytG-i~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~~~-i~~~~~~~i~~~l  143 (287)
                      +.+|.++ .-|||.+||||....+..  +.++++  |++|.+.. .|.|..-.       ..++++ +++....+.+++.
T Consensus        19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~   98 (560)
T 3h99_A           19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA   98 (560)
T ss_dssp             EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            3344444 455599999999876632  344433  88886654 44443211       024433 4455677888999


Q ss_pred             HcCCCCCceEEEEccc
Q 023084          144 ACGIDNSKASVFVQSH  159 (287)
Q Consensus       144 A~GiDp~kt~i~~qS~  159 (287)
                      ++|++++.  ++.-++
T Consensus        99 ~lgi~~d~--~~~t~~  112 (560)
T 3h99_A           99 GFNISYDN--YHSTHS  112 (560)
T ss_dssp             HTTCCCSE--EEESSS
T ss_pred             HcCCCCCC--ceeCCC
Confidence            99999884  454443

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=94.66  E-value=0.17  Score=49.03  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=47.8

Q ss_pred             eEEEeecC--CCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC-------CCCHHH-HHHHHHHHHHHHHH
Q 023084           80 RIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLA  144 (287)
Q Consensus        80 ~iytGi~P--TG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~~-i~~~~~~~i~~~lA  144 (287)
                      .+.+|-=|  +|.+||||....+..  +.++++  |++|.+..+ |.|..-.       ..++.+ .+++...+.+++.+
T Consensus         5 ~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~   84 (500)
T 2d5b_A            5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDL   84 (500)
T ss_dssp             EEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            45555555  799999999876522  344443  888866533 3222110       013333 34456678889999


Q ss_pred             cCCCCCceEEEEccc
Q 023084          145 CGIDNSKASVFVQSH  159 (287)
Q Consensus       145 ~GiDp~kt~i~~qS~  159 (287)
                      +|+++|  .++..++
T Consensus        85 lgi~~d--~~~~t~~   97 (500)
T 2d5b_A           85 LGIAYD--DFIRTTE   97 (500)
T ss_dssp             TTCCCS--EEEETTS
T ss_pred             hCCcCC--CCcccCC
Confidence            999988  4566666

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=94.23  E-value=0.14  Score=52.49  Aligned_cols=74  Identities=12%  Similarity=0.228  Sum_probs=49.3

Q ss_pred             CceEEEee-cCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEecc-eeecC-------CCCHHH-HHHHHHHHHHHH
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIVDL-HAITL-------PYDTQQ-LSKATRETAAIY  142 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg-~i--~~~~~LQ~--g~~~~ilIaD~-hA~t~-------~~d~~~-i~~~~~~~i~~~  142 (287)
                      ++.|.+++ -|+|.+||||..+ .+  .-+.++++  |++|++..+.+ |..-.       ..++.+ +.++...+.+++
T Consensus         3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~   82 (722)
T 1rqg_A            3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF   82 (722)
T ss_dssp             EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            45566665 5679999999987 44  33556655  89987776544 32211       024533 445677888899


Q ss_pred             HHcCCCCCc
Q 023084          143 LACGIDNSK  151 (287)
Q Consensus       143 lA~GiDp~k  151 (287)
                      .++|+++|.
T Consensus        83 ~~lgis~D~   91 (722)
T 1rqg_A           83 QRAKISFDF   91 (722)
T ss_dssp             HHHTCCCSE
T ss_pred             HHhCCCCCC
Confidence            999999885

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=93.83  E-value=0.33  Score=47.08  Aligned_cols=79  Identities=14%  Similarity=0.209  Sum_probs=49.2

Q ss_pred             ceEEEeec--CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHHH
Q 023084           79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIYL  143 (287)
Q Consensus        79 ~~iytGi~--PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~-~i~~~~~~~i~~~l  143 (287)
                      ..+.+|-=  |||.+||||....+..  +.++++  |++|.+..+ |.|..-.       ..++. -++++...+.+++.
T Consensus         6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~   85 (497)
T 2csx_A            6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE   85 (497)
T ss_dssp             EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            34445544  6699999999876522  344443  888766533 3332210       01343 34456778889999


Q ss_pred             HcCCCCCceEEEEccc
Q 023084          144 ACGIDNSKASVFVQSH  159 (287)
Q Consensus       144 A~GiDp~kt~i~~qS~  159 (287)
                      ++|+++|  .++..++
T Consensus        86 ~lgi~~d--~~~~t~~   99 (497)
T 2csx_A           86 FLKIEYT--KFIRTTD   99 (497)
T ss_dssp             HTTCCCS--EEEETTS
T ss_pred             HhCCcCC--CCccCCC
Confidence            9999988  3666776

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=92.68  E-value=0.4  Score=46.80  Aligned_cols=71  Identities=14%  Similarity=0.236  Sum_probs=44.3

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCceE
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKAS  153 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~~-i~~~~~~~i~~~lA~GiDp~kt~  153 (287)
                      |+|.+||||....+  .-+.++++  |++|.+..+ |.|..-.       ..++.+ .+++..++.+++.++|+++|  .
T Consensus        23 ~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~  100 (524)
T 2x1l_A           23 PNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD--R  100 (524)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--E
T ss_pred             CCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--C
Confidence            56999999988755  22444444  888866533 3222110       013433 34566778889999999887  4


Q ss_pred             EEEccc
Q 023084          154 VFVQSH  159 (287)
Q Consensus       154 i~~qS~  159 (287)
                      ++..++
T Consensus       101 ~~~t~~  106 (524)
T 2x1l_A          101 FIRTSD  106 (524)
T ss_dssp             EEETTS
T ss_pred             CeecCC
Confidence            666666

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=91.94  E-value=0.38  Score=47.10  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=44.2

Q ss_pred             CCceEE-EeecCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eecceee--cC-----CCCHHH-HHHHHHHHHHHH
Q 023084           77 VKKRIV-SGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI--TL-----PYDTQQ-LSKATRETAAIY  142 (287)
Q Consensus        77 ~~~~iy-tGi~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~il-IaD~hA~--t~-----~~d~~~-i~~~~~~~i~~~  142 (287)
                      .++.+| +|-=|.|.+||||..+.+..  +.++.+  |++|.+. =.|.|.-  +.     ..++.+ .+++...+.+++
T Consensus        24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~  103 (462)
T 3tqo_A           24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDE  103 (462)
T ss_dssp             TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            345555 46666699999998876522  333333  8888655 2233211  00     013333 345667788889


Q ss_pred             HHcCCCCCc
Q 023084          143 LACGIDNSK  151 (287)
Q Consensus       143 lA~GiDp~k  151 (287)
                      .++|+.++.
T Consensus       104 ~~LgI~~d~  112 (462)
T 3tqo_A          104 KALRVLSPD  112 (462)
T ss_dssp             HHHTCCCCS
T ss_pred             HHcCCCCCc
Confidence            999998754

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=91.66  E-value=0.54  Score=45.68  Aligned_cols=82  Identities=12%  Similarity=0.046  Sum_probs=47.2

Q ss_pred             CCCceEEEeecCC--CcchhhhHHHHHH--HHHHHhc--cCcEEEE--EecceeecC------CCCHHH-HHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL------PYDTQQ-LSKATRETAA  140 (287)
Q Consensus        76 ~~~~~iytGi~PT--G~lHLGh~vg~i~--~~~~LQ~--g~~~~il--IaD~hA~t~------~~d~~~-i~~~~~~~i~  140 (287)
                      +.+..+|+- .||  |.+||||..+++.  -+.++.+  |++|.+.  +.|+=.-+.      ..++.+ .+++..++.+
T Consensus        20 ~~~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~   98 (461)
T 1li5_A           20 AGEVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHK   98 (461)
T ss_dssp             TTEEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCCeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            334556553 666  9999999987662  2334433  8888665  344410000      013323 3345667888


Q ss_pred             HHHHcCCCCCceEEEEccc
Q 023084          141 IYLACGIDNSKASVFVQSH  159 (287)
Q Consensus       141 ~~lA~GiDp~kt~i~~qS~  159 (287)
                      ++.++|+.+.. .+...|+
T Consensus        99 ~~~~LgI~~~d-~~~r~t~  116 (461)
T 1li5_A           99 DFDALNILRPD-MEPRATH  116 (461)
T ss_dssp             HHHHTTCCCCS-BCCBGGG
T ss_pred             HHHHcCCCCCc-ccccccc
Confidence            99999998532 2445665

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=91.63  E-value=0.77  Score=43.79  Aligned_cols=81  Identities=15%  Similarity=0.059  Sum_probs=47.7

Q ss_pred             CceE-EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHHH
Q 023084           78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYL  143 (287)
Q Consensus        78 ~~~i-ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~i~~~l  143 (287)
                      ++.+ ++|-=|.|.+||||....+  .-+.++++  |++|.+. -.|.|..-.       ..++.+ ..++...+.+++.
T Consensus        39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~  118 (414)
T 3c8z_A           39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA  118 (414)
T ss_dssp             EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3444 4444445999999988765  22344444  8988554 455553110       013322 3445677888899


Q ss_pred             HcCCC-CCceEEEEccch
Q 023084          144 ACGID-NSKASVFVQSHV  160 (287)
Q Consensus       144 A~GiD-p~kt~i~~qS~~  160 (287)
                      ++|+. ++  .++..|++
T Consensus       119 ~Lgi~~~d--~~~r~t~~  134 (414)
T 3c8z_A          119 ALRVLPPH--DYVAATDA  134 (414)
T ss_dssp             HTTCCCCS--EEEEGGGC
T ss_pred             HcCCCCCc--ceecccch
Confidence            99998 66  34555553

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=89.68  E-value=1  Score=47.34  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHH
Q 023084           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIY  142 (287)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~-~i~~~~~~~i~~~  142 (287)
                      .++++++++ -|||.+||||....+  .-+.++++  |++|.+..+ |.|.+-.       ..++. -..+++..+.+++
T Consensus        53 ~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l  132 (880)
T 4arc_A           53 EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQL  132 (880)
T ss_dssp             CEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            355777776 667999999988754  22444544  888876544 4443311       01333 2344567788889


Q ss_pred             HHcCCCCC
Q 023084          143 LACGIDNS  150 (287)
Q Consensus       143 lA~GiDp~  150 (287)
                      .++|+..|
T Consensus       133 ~~LGis~D  140 (880)
T 4arc_A          133 KMLGFGYD  140 (880)
T ss_dssp             HHTTCCCC
T ss_pred             HHhCCCcC
Confidence            99998666

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=88.89  E-value=2.5  Score=41.75  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             CceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc---------e--eecCC-----CCHHH-HH
Q 023084           78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL---------H--AITLP-----YDTQQ-LS  132 (287)
Q Consensus        78 ~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~---------h--A~t~~-----~d~~~-i~  132 (287)
                      ++++|+ ..||  |.+||||..+.+  .-+.++++  |++|.+.  |.|.         |  +++..     .++.+ .+
T Consensus        42 ~v~~Yv-cgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~  120 (501)
T 3sp1_A           42 NVKVYA-CGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE  120 (501)
T ss_dssp             CEEEEE-CCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred             cceEEe-CCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence            456665 3466  999999988755  22333333  8999776  4444         2  22221     24433 45


Q ss_pred             HHHHHHHHHHHHcCCCCCc
Q 023084          133 KATRETAAIYLACGIDNSK  151 (287)
Q Consensus       133 ~~~~~~i~~~lA~GiDp~k  151 (287)
                      +++..+.+++.++|+.++.
T Consensus       121 ~~~~~f~~d~~~Lgi~~d~  139 (501)
T 3sp1_A          121 FFTEAFFNDCRKLNIVYPD  139 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHHHHHHHHcCCCCCC
Confidence            5677888999999998775

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=87.60  E-value=0.48  Score=45.94  Aligned_cols=14  Identities=29%  Similarity=0.496  Sum_probs=12.5

Q ss_pred             cCCCEEEeeccchH
Q 023084          215 YQSDFVPVGEDQKQ  228 (287)
Q Consensus       215 ~~adlvpvG~DQ~~  228 (287)
                      +.+|+..+|.||..
T Consensus       249 ~p~di~~~G~D~~~  262 (497)
T 2csx_A          249 WPADLHLVGKDILR  262 (497)
T ss_dssp             CSCSCEEEEGGGHH
T ss_pred             CCceEEEeecchhH
Confidence            37899999999988

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=86.67  E-value=0.55  Score=45.39  Aligned_cols=15  Identities=13%  Similarity=0.328  Sum_probs=12.6

Q ss_pred             cCCCEEEeeccchHH
Q 023084          215 YQSDFVPVGEDQKQH  229 (287)
Q Consensus       215 ~~adlvpvG~DQ~~h  229 (287)
                      +.+|+..+|.||...
T Consensus       250 ~p~di~~~G~D~~~f  264 (500)
T 2d5b_A          250 WPHAWHLIGKDILKP  264 (500)
T ss_dssp             GGGEEEEEEGGGHHH
T ss_pred             CCCeEEEEeechhhh
Confidence            357999999999983

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=86.35  E-value=1.2  Score=46.77  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=42.9

Q ss_pred             CceEEEe-ecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecc-eeec------------C--CCCH------HH-
Q 023084           78 KKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDL-HAIT------------L--PYDT------QQ-  130 (287)
Q Consensus        78 ~~~iytG-i~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~-hA~t------------~--~~d~------~~-  130 (287)
                      ++.+++| --|||.+|+||.+...  .-+.+++.  |+++.+..+-+ |.+-            +  +.+.      +. 
T Consensus        35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~  114 (862)
T 1gax_A           35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV  114 (862)
T ss_dssp             EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred             cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence            4566666 3457999999988644  22455555  89987775544 4430            1  1111      12 


Q ss_pred             ---HHHHHHHHHHHHHHcCCC
Q 023084          131 ---LSKATRETAAIYLACGID  148 (287)
Q Consensus       131 ---i~~~~~~~i~~~lA~GiD  148 (287)
                         ..++...+.+++..+|+.
T Consensus       115 ~~~~~~~~~~~~~q~~rlG~s  135 (862)
T 1gax_A          115 WQWKEESGGTILKQLKRLGAS  135 (862)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCcc
Confidence               344556677788888963

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=82.91  E-value=0.97  Score=44.05  Aligned_cols=15  Identities=20%  Similarity=0.452  Sum_probs=12.6

Q ss_pred             cCCCEEEeeccchHH
Q 023084          215 YQSDFVPVGEDQKQH  229 (287)
Q Consensus       215 ~~adlvpvG~DQ~~h  229 (287)
                      +.+|+..+|.||...
T Consensus       264 ~p~di~~~G~D~~~f  278 (524)
T 2x1l_A          264 WPADLHMIGKDIIRF  278 (524)
T ss_dssp             CSCSEEEEEGGGHHH
T ss_pred             CCCeEEEEeechhHh
Confidence            358999999999864

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=82.88  E-value=0.81  Score=44.68  Aligned_cols=15  Identities=20%  Similarity=0.290  Sum_probs=12.3

Q ss_pred             CCCEEEeeccchHHH
Q 023084          216 QSDFVPVGEDQKQHL  230 (287)
Q Consensus       216 ~adlvpvG~DQ~~hi  230 (287)
                      -+|+...|.||...+
T Consensus       278 p~d~~~~G~D~~~fh  292 (542)
T 3u1f_A          278 PADVHVIGKDILKFH  292 (542)
T ss_dssp             SCSEEEEEGGGHHHH
T ss_pred             cceEEEecccccccc
Confidence            368999999997754

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=82.60  E-value=2.2  Score=44.75  Aligned_cols=73  Identities=16%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYL  143 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+ -|+|.+||||....+  .-+.++++  |+++.+..+ |.|.+-.       ..++ +-..++...+.+++.
T Consensus        34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~  113 (878)
T 2v0c_A           34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR  113 (878)
T ss_dssp             EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            46777773 445999999988754  22444444  888876544 3332210       0133 234456677888899


Q ss_pred             HcCCCCC
Q 023084          144 ACGIDNS  150 (287)
Q Consensus       144 A~GiDp~  150 (287)
                      ++|+..|
T Consensus       114 ~LGi~~D  120 (878)
T 2v0c_A          114 LMGILYD  120 (878)
T ss_dssp             HTTCCCC
T ss_pred             HhCCccC
Confidence            9998655

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=80.97  E-value=2  Score=44.30  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             ceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 023084           79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI  122 (287)
Q Consensus        79 ~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~  122 (287)
                      +.|.+|. -|+|.+||||.+..+  .-+.++++  |++|.+..+ |.|.+
T Consensus        36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~   85 (810)
T 1wkb_A           36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS   85 (810)
T ss_dssp             EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred             EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence            4444443 346999999998755  22445554  888876543 44433

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=80.55  E-value=1  Score=45.42  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=28.2

Q ss_pred             EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 023084           82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL  119 (287)
Q Consensus        82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i--lIaD~  119 (287)
                      |+|--|+|++||||..+++  ..+.++.+  |++|+.  -|.||
T Consensus       149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~  192 (607)
T 1f7u_A          149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW  192 (607)
T ss_dssp             CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred             ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence            6788888999999999766  33455544  888855  48884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1i6la_	326	c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)	2e-55
d1r6ta2	386	c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (	1e-35
d1n3la_	339	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum	7e-35
d1h3fa1	343	c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS)	1e-19
d1j1ua_	306	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc	9e-19

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  180 bits (457), Expect = 2e-55
 Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 14/206 (6%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS      + G
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N             R G 
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167

Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
           +F +PE  IP  GAR+MSL D   K+
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKM 193

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-35
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 18/181 (9%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAI-TLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  I   W+    +   +  + D            Q    
Sbjct: 74  PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
             E A   +ACG D +K  +F                +   I       Q K        
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKGIFGF--T 189

Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 243
           ++  +  +++P + A+                    +P   DQ  +  +TR++A R+ Y 
Sbjct: 190 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP 249

Query: 244 Y 244
            
Sbjct: 250 K 250

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 7e-35
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 7/174 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           + +I  G   TG  H+  ++   K    L+   E      DLHA              R 
Sbjct: 32  ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91

Query: 138 TAAI------YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
           +           + G+   K      +  +   E    +   + +   +   +   +  K
Sbjct: 92  SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
              E+  ++ L YP L A D    + D    G DQ++      +    + Y   
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR 204

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 85.0 bits (209), Expect = 1e-19
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 12/177 (6%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
              +  G  PT   +HLG+ +   K     +  ++ +  I D   +      +  ++   
Sbjct: 33  PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92

Query: 137 ETAAIY-----------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 185
                                 +     +   S     +    ++   + +     + + 
Sbjct: 93  TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152

Query: 186 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
             K     G  + +  L YP   A D +  ++D    G DQ+ +L + RE+      
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 82.4 bits (202), Expect = 9e-19
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 7/179 (3%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKAT 135
           +K    G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA      +  ++ K  
Sbjct: 28  EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
                ++ A G+             + +   ++ L+  T +    + ++          E
Sbjct: 87  DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL----IAREDE 142

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
           N  VA + YP++  +DI     D    G +Q++   L REL  +            L G
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDG 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	100.0
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	100.0
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	100.0
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	100.0
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	100.0
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	99.97
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	99.96
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	99.05
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	98.93
d1gtra2	331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	98.69
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	96.56
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	96.14
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	96.01
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	95.77
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	95.35
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	91.61
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	90.94
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	90.38
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	88.3
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	84.75
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	84.02
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	83.52
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	81.25

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7e-58  Score=428.15  Aligned_cols=195  Identities=53%  Similarity=0.857  Sum_probs=184.1

Q ss_pred             ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (287)
Q Consensus        79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS  158 (287)
                      .+||||++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+++.||+||
T Consensus         2 ~~v~tG~~PSG~~HlG~~~g~i~~~~~lq~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS   81 (326)
T d1i6la_           2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (326)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGG
T ss_pred             CeeEeCcCCCCccHHHHHHHHHHHHHHHhCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEeec
Confidence            48999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (287)
Q Consensus       159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~  238 (287)
                      ++++|.++.|++++.+++++++|+.+|+++.+.  .+++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~eltRdia~  159 (326)
T d1i6la_          82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG--KEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (326)
T ss_dssp             GCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHTT--CSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhhhhhhhhhhcccchhhccc--cccCCccccccccccchhHHhcCccccccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999998654  367899999999999999999999999999999999999999999


Q ss_pred             HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      |||+.||.            .|..|...+....++++++.||.+|||||
T Consensus       160 r~n~~~~~------------~~~~~~~~i~~~~~~~~~~~d~~~kmskS  196 (326)
T d1i6la_         160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKS  196 (326)
T ss_dssp             HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTT
T ss_pred             HhhhccCC------------cccccccccccccceeeecCCcccccccc
Confidence            99999984            47788887776667888888999999997

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-46  Score=357.57  Aligned_cols=186  Identities=18%  Similarity=0.245  Sum_probs=159.9

Q ss_pred             CCCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084           75 SSVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        75 ~~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~  150 (287)
                      .++++++|+|++|||. ||||||+++++ .+++|+  +++++|+|||+||+++ +.+++++++++.+++++|+|+|+||+
T Consensus        71 ~gkp~~vytG~~PSg~~lHlGh~v~~~~-~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~  149 (386)
T d1r6ta2          71 NKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN  149 (386)
T ss_dssp             TTCCEEEEEEECCCTTCCBGGGHHHHHH-HHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             cCCCeEEEeccCCCCchhHHHHHHHHHH-HHHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3568999999999997 89999999874 344775  7889999999999998 56999999999999999999999999


Q ss_pred             ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcC-----------CC
Q 023084          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQ-----------SD  218 (287)
Q Consensus       151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~-----------ad  218 (287)
                      |+.||+||+|......+|..     +.++.|+.++++++++++ .+++++|+|+||+|||||||+++           +|
T Consensus       150 kt~i~~~s~~~~~l~~~~~~-----~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~  224 (386)
T d1r6ta2         150 KTFIFSDLDYMGMSSGFYKN-----VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQC  224 (386)
T ss_dssp             SEEEEEHHHHGGGCTTHHHH-----HHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEE
T ss_pred             ceEEEeCcHHHHHHHHHHHH-----HHHHHHhcchhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhcccccccc
Confidence            99999999985443333332     235668888888887776 57889999999999999999986           56


Q ss_pred             EEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       219 lvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +||||.||++|+++|||+|+|||                  +++|..+++++   +|||+++.+|||||
T Consensus       225 lvpvG~DQ~~h~~ltRDia~r~~------------------~~~p~~l~~~~---lpgL~G~~~KMSsS  272 (386)
T d1r6ta2         225 LIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHSTF---FPALQGAQTKMSAS  272 (386)
T ss_dssp             EEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEECC---CEETTEEEEECCTT
T ss_pred             ccccchhHHHHHHHHHHHHHHhC------------------CCCceeecccc---ccCCCCcccccccC
Confidence            99999999999999999999998                  67899999987   99996555799987

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-44  Score=337.45  Aligned_cols=183  Identities=21%  Similarity=0.156  Sum_probs=138.6

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC-C-CHHHHHHHH----HHHHHHHHHcCCCC
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-Y-DTQQLSKAT----RETAAIYLACGIDN  149 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~-~-d~~~i~~~~----~~~i~~~lA~GiDp  149 (287)
                      ++++||+||+|||++|||||+++++. ..+|+ |++++|+|||+||++++ . +.+..+.+.    ..+.+.|.|+|+||
T Consensus        31 ~~~~vy~G~~PTg~lHlG~~l~~~~l-~~~q~~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~d~  109 (339)
T d1n3la_          31 RELKIYWGTATTGKPHVAYFVPMSKI-ADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPL  109 (339)
T ss_dssp             SCCEEEEEECCSSCCBGGGHHHHHHH-HHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeeCCCCccHHHHHHHHHHH-HHHHHCCCcEEEEecchhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhccCh
Confidence            57899999999999999999998754 45666 99999999999999973 2 222222222    33557788999999


Q ss_pred             CceEEEEccchhhhhHHHHHH---hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084          150 SKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (287)
Q Consensus       150 ~kt~i~~qS~~~~~~el~w~L---~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ  226 (287)
                      +|+.||+||+|..+.+..|.+   ...+++.+..+.  ++.+.+ . .+++++|+|+||+||||||+++++|+||||.||
T Consensus       110 ~k~~i~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~~g~f~YP~lQaaDil~~~ad~v~~G~DQ  185 (339)
T d1n3la_         110 EKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKA--GAEVVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQ  185 (339)
T ss_dssp             TTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHH--TTTTSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred             HHheeeecChHhhhhhHHHHHhhHHHHHHHHHHHHH--HHHHhc-c-CCCCccccccccHHHHHHHHhccCCccccchhH
Confidence            999999999997665555544   444444432222  112211 1 367899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++|++++||+|+|||+                  +.|..+++|+   +|+| +|. |||||
T Consensus       186 ~~~i~l~rd~a~r~~~------------------~~~~~l~~pl---l~~l-~g~-kmsks  223 (339)
T d1n3la_         186 RKIFTFAEKYLPALGY------------------SKRVHLMNPM---VPGL-TGS-KMSSS  223 (339)
T ss_dssp             HHHHHHHHHHGGGGTC------------------CCCEEEEECC---CCCS-SCC------
T ss_pred             HHHHHHHHHHHhhhcc------------------Ccceeeeecc---cccc-ccc-ccccc
Confidence            9999999999999983                  4577888887   9999 785 67765

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.4e-44  Score=335.49  Aligned_cols=177  Identities=26%  Similarity=0.380  Sum_probs=145.3

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV  154 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i  154 (287)
                      .++++|+||+|||++|||||++ +.+|++||+ |++++|+|||+||+++ +.+++++++++++++++|+|+|+||+   +
T Consensus        27 ~~~~~y~G~~PTG~lHlGh~v~-~~~~~~lq~~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~a~G~~~~---~  102 (306)
T d1j1ua_          27 DEKSAYIGFEPSGKIHLGHYLQ-IKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAK---Y  102 (306)
T ss_dssp             SSEEEEEEECCCSSCBHHHHHH-HHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCCE---E
T ss_pred             CCCeEEEeECCCCcchHHHHHH-HHHHHHHHHCCCcEEEEeccHHHHhhhccchhhhhhhhhHHHHHHHhhhcccc---c
Confidence            3568999999999999999995 679999999 8999999999999998 56889999999999999999999984   5


Q ss_pred             EEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHH
Q 023084          155 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE  231 (287)
Q Consensus       155 ~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~  231 (287)
                      +++|++.   ++....|.+++.++++++.+..+   +..+.+ ++.++|+|+||+||||||+++++|+||||.||++|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~-~~~~~~~~~YP~lQaaDil~~~~~~~~~G~DQ~~~~~  178 (306)
T d1j1ua_         103 VYGSEFQLDKDYTLNVYRLALKTTLKRARRSME---LIARED-ENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHM  178 (306)
T ss_dssp             EEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTT---TTSCCC-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred             cccchhhhhhhHHHhhhhhhhhhhhhhhhhhhh---hhhhhh-hccccccccccchhhcchhhcCcceeccchhhHHHHH
Confidence            6777754   34455566778888886655544   333443 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       232 LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++||++++                      +|..+.+++   |||| ||.+|||||
T Consensus       179 l~rdl~~~----------------------~~~~~~~~~---l~gl-dG~~KMSKS  208 (306)
T d1j1ua_         179 LARELLPK----------------------KVVCIHNPV---LTGL-DGEGKMSSS  208 (306)
T ss_dssp             HHHHHSSS----------------------CCEEEEECC---CCCT-TCCC-----
T ss_pred             Hhhhcccc----------------------cceeccccc---ccCc-ccccccccc
Confidence            99999763                      356677776   9999 898999998

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7e-42  Score=321.72  Aligned_cols=188  Identities=20%  Similarity=0.234  Sum_probs=141.4

Q ss_pred             CCCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH------HHHHHHHHHHHHHHHH--
Q 023084           75 SSVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT------QQLSKATRETAAIYLA--  144 (287)
Q Consensus        75 ~~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~------~~i~~~~~~~i~~~lA--  144 (287)
                      -++++++|+||+|||+ ||||||+++ .+|++||+ |++++|+|||+||+|++.+.      ....+.+.++.+.+++  
T Consensus        30 ~g~~~~vY~G~~PTg~sLHlGh~v~~-~~~~~lq~~g~~~~~~iad~~a~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  108 (343)
T d1h3fa1          30 EGRPLTVKLGADPTRPDLHLGHAVVL-RKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQA  108 (343)
T ss_dssp             TCSCCEEEEEECTTCCSCBHHHHHHH-HHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHH
T ss_pred             cCCCCEEEEeecCCCCcccHHHHHHH-HHHHHHHHCCCceEEEEechhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3468899999999995 999999996 58999999 89999999999999984221      1112233334433333  


Q ss_pred             ---cCCCCCceEEEEccchhhhhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCE
Q 023084          145 ---CGIDNSKASVFVQSHVRAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF  219 (287)
Q Consensus       145 ---~GiDp~kt~i~~qS~~~~~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adl  219 (287)
                         .+.+++++.|+.+++|.......|.  +++.++++++.+..+++.....  ...+++|+|+||+||||||+.+++|+
T Consensus       109 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~YP~lQaaDi~~l~~~~  186 (343)
T d1h3fa1         109 GKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV  186 (343)
T ss_dssp             TTTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred             hhhhcccccchhheechHHHhhhhHHHHHHhcccceecchhhhhhhhhcccc--cccccchhhhhHHHHhhhhhhhcccc
Confidence               2345677889999998654333333  5678899988888777655433  36789999999999999999999999


Q ss_pred             EEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       220 vpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ||||.||++|+++|||+|+|||+                  ..|..+++|+   |||| ||++|||||
T Consensus       187 vp~G~DQ~~~i~l~Rdla~r~~~------------------~~~~~~~~p~---L~gl-dG~~KMSKS  232 (343)
T d1h3fa1         187 EMGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLMPL---LVGL-DGREKMSKS  232 (343)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEECC---CBCT-TSSSBCCGG
T ss_pred             cccccchHHHHHHHHHHHhhcCc------------------cccceeeccc---cccc-cccchhhcc
Confidence            99999999999999999999984                  3467778887   9999 887899998

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=3e-31  Score=248.24  Aligned_cols=185  Identities=16%  Similarity=0.158  Sum_probs=146.1

Q ss_pred             CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHH
Q 023084           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (287)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~l  143 (287)
                      ++++++|+||+||++ +||||++++ .++.+||+ ||.++++|+|+|++++ |         .+.+.++++...+...+.
T Consensus        29 ~~~~~~Y~G~DPTa~sLHlGhlv~l-~~l~~~q~~Gh~~i~LiG~~T~~iGDPsgk~~~R~~l~~~~i~~n~~~~~~~~~  107 (323)
T d1jila_          29 KEQVTLYCGADPTADSLHIGHLLPF-LTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMH  107 (323)
T ss_dssp             HSCCEEEEEECCSSSSCBHHHHHHH-HHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEcccCCCccccHHHHHHH-HHHHHHHHhCCceEEeehhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhhh
Confidence            357899999999998 999999996 48888999 9999999999999998 4         245778888777666665


Q ss_pred             HcC--CCCCceEEEEccchhh---hhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhh----
Q 023084          144 ACG--IDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL----  214 (287)
Q Consensus       144 A~G--iDp~kt~i~~qS~~~~---~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~----  214 (287)
                      ...  .++++++++.+++|..   +.+..-.++..++++++.+.-.++.   +.+ .++++.+|+||+||++|+++    
T Consensus       108 ~~~~~~~~~~~~i~~n~~w~~~~~~~~~l~~~~~~~~v~~ml~~d~~~~---R~~-~~is~~Ef~YpllQ~~Df~~l~~~  183 (323)
T d1jila_         108 NIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQS---RLE-HGISYTEFTYTILQAIDFGHLNRE  183 (323)
T ss_dssp             HHSCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHH---HHT-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccceEEechhhhhccchHHHHHHHHhhhhhhhHHHHhHHHHH---Hhc-ccccHhhHHHHHHHHHHHHHHHHH
Confidence            442  2467889999999843   2333334677899998777766544   443 67999999999999999987    


Q ss_pred             cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      +++|++.||.||++|+.++||+++++.   |              .+.+..+.+|+   |.+. || +|||||
T Consensus       184 ~~~~iqiGGsDQ~~Ni~~Grdl~~~~~---~--------------~~~~~~it~pL---l~~~-~G-~Km~KS  234 (323)
T d1jila_         184 LNCKIQVGGSDQWGNITSGIELMRRMY---G--------------QTDAYGLTIPL---VTKS-DG-KKFGKS  234 (323)
T ss_dssp             HCEEEEEEEGGGHHHHHHHHHHHHHHH---C--------------CCCCEEEEECC---CBCT-TS-CBTTBC
T ss_pred             hhchhhhhccccHHHhhhhhhhhhhhc---c--------------cccceEEeccc---ccch-hh-hhhhhc
Confidence            799999999999999999999999974   1              12233445576   7776 78 699998

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.96  E-value=8.6e-30  Score=237.87  Aligned_cols=184  Identities=15%  Similarity=0.187  Sum_probs=145.4

Q ss_pred             CCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHH--
Q 023084           77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIY--  142 (287)
Q Consensus        77 ~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~--  142 (287)
                      +++++|+||+||+. +||||+++++ .+.+||+ ||+++++|+|.|++++ |         .+.+.+++|+..+...+  
T Consensus        29 ~~~~~Y~G~DPTa~sLHlGhlv~l~-~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk~~eR~~l~~e~i~~n~~~~~~q~~~  107 (319)
T d2ts1a_          29 ERVTLYCGFDPTADSLHIGHLATIL-TMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR  107 (319)
T ss_dssp             SCCEEEEEECCSSSSCBGGGHHHHH-HHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCceEEEeecCCCCcchHHHHHHHH-HHHHHHHcCCceeEEeeehhhccCCCcccchhhhcCCHHHHHHHHHHHHHHHHH
Confidence            57899999999987 9999999965 7888999 9999999999999998 4         13466777766554444  


Q ss_pred             -HHcCCCCCceEEEEccchhh---hhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---
Q 023084          143 -LACGIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---  215 (287)
Q Consensus       143 -lA~GiDp~kt~i~~qS~~~~---~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~---  215 (287)
                       +..+.++++++|+.|++|..   +.+..-.++..++++++.+.-.++   .++. .++++.+|+||+||++|++++   
T Consensus       108 ~~~~~~~~~~~~iv~N~~w~~~~~~~~~l~~~g~~~tv~~ml~rd~v~---~R~~-~~is~~Ef~Y~llQayDf~~l~~~  183 (319)
T d2ts1a_         108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQ---SRIE-TGISFTEFSYMMLQAYDFLRLYET  183 (319)
T ss_dssp             SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHH---TTTT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccceeehHHHHhhHHHHHHHHHHccccchhhhhhhHHHH---Hhcc-cCcchhhhHHHHHHHHHHHHHhhc
Confidence             44556788999999999843   333333467789999766655544   3443 679999999999999999997   


Q ss_pred             -CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       216 -~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                       +++++.||.||+.|+..+||+.++++   |.              .....+..|+   |++. ||. |||||
T Consensus       184 ~~~~~qiGGsDQ~gNi~~G~dli~~~~---~~--------------~~~~~lT~PL---L~~~-~G~-K~~ks  234 (319)
T d2ts1a_         184 EGCRLQIGGSDQWGNITAGLELIRKTK---GE--------------ARAFGLTIPL---VTKA-DGT-KFGKT  234 (319)
T ss_dssp             HCEEEEEEEGGGHHHHHHHHHHHHHHH---C----------------CCEEEEECC---CCCT-TSC-CTTCC
T ss_pred             cCCchhhccchhhhHHHHHHHHHHHhc---cc--------------ccceEeeccc---cccc-ccc-eeeec
Confidence             89999999999999999999999975   21              1233466687   8997 884 88887

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.5e-10  Score=100.65  Aligned_cols=171  Identities=16%  Similarity=0.202  Sum_probs=104.8

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCCCceEEEEccch-hh
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVFVQSHV-RA  162 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~-~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~-~~  162 (287)
                      .|||.|||||+..++.+|..-.. +.++++-|-|.       |++ ...+..+.+.+++.++|++++. .+++||+. ..
T Consensus        10 sPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlgl~~d~-~~~~QS~r~~~   81 (286)
T d1nzja_          10 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI-------DPPREVPGAAETILRQLEHYGLHWDG-DVLWQSQRHDA   81 (286)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS-------CGGGSCTTHHHHHHHHHHHTTCCCSS-CCEEGGGCHHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC-------CCCcCCHHHHHHHHHHHHHhhhcccc-ccchhHHHHHH
Confidence            46799999999999989876655 55666666665       332 2335778889999999999985 57899984 33


Q ss_pred             hhHHHHH-------HhccCCHHHHhchhcHHHHHhh-hC--C---------------------------------CCc--
Q 023084          163 HVELMWL-------LSSATPIGWLNKMIQFKEKSHK-AG--G---------------------------------ENV--  197 (287)
Q Consensus       163 ~~el~w~-------L~~~~t~~~L~R~~~~k~~~~~-~~--~---------------------------------~~i--  197 (287)
                      |.+..-.       +.|.+|-.+++........... ..  .                                 +.+  
T Consensus        82 Y~~~~~~L~~~g~aY~C~ct~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~  161 (286)
T d1nzja_          82 YREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIH  161 (286)
T ss_dssp             HHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEE
T ss_pred             HHHHHHHHHHcCCcccccccHHHHHhhccccccccccccchhhhhhhhhcccccccceeeeeeeeeeecccccccccccc
Confidence            3332222       5688988877544221110000 00  0                                 000  


Q ss_pred             -cchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCccccc
Q 023084          198 -GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMS  276 (287)
Q Consensus       198 -~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~g  276 (287)
                       .=|..+|=+-=+.|=...+.++|.=|.|...+-..-..|.+.++                  ++.|+..|.++   |.+
T Consensus       162 R~dg~ptY~lA~vVDD~~~gIThViRG~D~l~st~~Q~~L~~~lg------------------~~~P~y~H~pl---i~~  220 (286)
T d1nzja_         162 RRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLPL---ALN  220 (286)
T ss_dssp             CTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECB---CCC
T ss_pred             CCCCCeeeeehhhhcccccccceecccccccchHHHHHHHHHhhC------------------CCccceeecce---EEc
Confidence             01222222222233334689999999999998888888888887                  67899888886   666


Q ss_pred             CCCCCCCCCCC
Q 023084          277 LTDGLSKVLTI  287 (287)
Q Consensus       277 L~dg~~KMSKS  287 (287)
                      . +| +||||+
T Consensus       221 ~-~g-~KLSKr  229 (286)
T d1nzja_         221 P-QG-AKLSKQ  229 (286)
T ss_dssp             -----------
T ss_pred             c-CC-cccccc
Confidence            6 67 599996

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.93  E-value=2.3e-09  Score=97.23  Aligned_cols=173  Identities=16%  Similarity=0.080  Sum_probs=109.8

Q ss_pred             cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEEEc
Q 023084           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ  157 (287)
Q Consensus        86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-------~i~~q  157 (287)
                      .|||.|||||+..++.+|..-+. +.++++-|-|.    ++.  ....+..+.+.+++.++||++|..       .++.|
T Consensus         9 sPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRidDt----D~~--R~~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~q   82 (305)
T d1j09a2           9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DRA--RYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ   82 (305)
T ss_dssp             CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CTT--SCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCc--cCchHHHHHHHHHHHHHhcCcccCCcCCCCCcceee
Confidence            46799999999999988865555 55555556554    311  123356778889999999998742       57899


Q ss_pred             cchh-hhhHHHHH-------HhccCCHHHHhchhc-------------H---HHHHhh-------hC---CCCc------
Q 023084          158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQ-------------F---KEKSHK-------AG---GENV------  197 (287)
Q Consensus       158 S~~~-~~~el~w~-------L~~~~t~~~L~R~~~-------------~---k~~~~~-------~~---~~~i------  197 (287)
                      |+.. .+.+....       +.|.++..++.....             -   ++....       +.   .+..      
T Consensus        83 S~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~d~i  162 (305)
T d1j09a2          83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL  162 (305)
T ss_dssp             GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred             ecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhHHHHhhcCCcceEEEeccccCCccccchh
Confidence            9842 23322222       568888887653210             0   000000       00   0000      


Q ss_pred             ---------cc---------hhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 023084          198 ---------GV---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI  259 (287)
Q Consensus       198 ---------~~---------g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~  259 (287)
                               .+         |..+|=+--+.|=...+.++|.-|.|-..+-..-..+.+.++                  
T Consensus       163 ~~~~~~~~~~~~D~vi~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~l~~~Lg------------------  224 (305)
T d1j09a2         163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------  224 (305)
T ss_dssp             TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred             hceeeeccccCCCeEEECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHHHHHhhc------------------
Confidence                     00         233333333444446799999999999998888888888876                  


Q ss_pred             cCCCceecCCCCcccccCCCCCCCCCCC
Q 023084          260 FKVPEPLIPPAGARVMSLTDGLSKVLTI  287 (287)
Q Consensus       260 f~~P~~l~~~~~~~l~gL~dg~~KMSKS  287 (287)
                      ++.|...+.+.   +... +| +||||+
T Consensus       225 ~~~p~~~h~~l---~~~~-~g-~KLSKr  247 (305)
T d1j09a2         225 WEAPRFYHMPL---LRNP-DK-TKISKR  247 (305)
T ss_dssp             CCCCEEEEECC---CBCT-TS-CBCCTT
T ss_pred             CCCCceeeecc---cccC-cc-cccccc
Confidence            66788888876   6665 67 699996

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=6e-08  Score=88.89  Aligned_cols=176  Identities=10%  Similarity=-0.004  Sum_probs=112.7

Q ss_pred             eEEEeecCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHH-HHHHHHHHHHHHHHcCCCCCceEEE
Q 023084           80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQ-LSKATRETAAIYLACGIDNSKASVF  155 (287)
Q Consensus        80 ~iytGi~PT--G~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~-i~~~~~~~i~~~lA~GiDp~kt~i~  155 (287)
                      .|-|=|.||  |.|||||+..++.+|..-.. |.++++-|-|.       |+++ ..+..+.+.+++.++||++|. .++
T Consensus        19 ~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak~~~G~fiLRIEDt-------D~~R~~~~~~~~I~~dL~WLGl~wD~-~~~   90 (331)
T d1gtra2          19 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVR   90 (331)
T ss_dssp             SCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCE
T ss_pred             eEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCcccchHHHHHHHHHHHHhccccc-cce
Confidence            445555554  99999999999989876655 66677777776       5433 445677889999999999985 567


Q ss_pred             Eccchhh-hh---HHHHH----HhccCCHHHHhchhc----------------------HHHHHhh---hCC--------
Q 023084          156 VQSHVRA-HV---ELMWL----LSSATPIGWLNKMIQ----------------------FKEKSHK---AGG--------  194 (287)
Q Consensus       156 ~qS~~~~-~~---el~w~----L~~~~t~~~L~R~~~----------------------~k~~~~~---~~~--------  194 (287)
                      +||+..+ |.   +..+.    +.|.||-.+++.+..                      ++.+...   .+.        
T Consensus        91 ~QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  170 (331)
T d1gtra2          91 YSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKID  170 (331)
T ss_dssp             EGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHHHHHHHTCSCTTSCEEEECSC
T ss_pred             ecchHHHHHHHHHHhhhhcCCcccccccHHHHHHHHhhhhccCCCCCCCCccccccHHHhhHHhhccccCCceEEEEecc
Confidence            8998533 22   22222    668999888754210                      0111000   000        


Q ss_pred             -CC--c---------------------cchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccc
Q 023084          195 -EN--V---------------------GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK  250 (287)
Q Consensus       195 -~~--i---------------------~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~  250 (287)
                       ..  .                     .-|..+|=+--+.|=...+.++|.=|.|...+-..-..|.+.++         
T Consensus       171 ~~~~~~~~~d~~~~~~~~~~~d~v~~r~dg~ptY~lA~vVDD~~~gIThViRG~D~l~~T~~q~~l~~~Lg---------  241 (331)
T d1gtra2         171 MASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNIT---------  241 (331)
T ss_dssp             TTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHSC---------
T ss_pred             cCCCceeEEccceeeeccCCCcccccccccccHHhhhHHHhhhhhcccceecccccccccHHHHHHHHhcc---------
Confidence             00  0                     01223454444555566789999999999998777677777665         


Q ss_pred             ccCCCCCcccCCCceecCCCCcccccCCCCCCCCCC
Q 023084          251 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLT  286 (287)
Q Consensus       251 ~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSK  286 (287)
                               ++.|...+.+.   +.++ +| +||||
T Consensus       242 ---------~~~p~~~h~~~---~l~~-~g-~~lsk  263 (331)
T d1gtra2         242 ---------IPVHPRQYEFS---RLNL-EY-TVMSK  263 (331)
T ss_dssp             ---------CSCCCEEEEEC---CCCB-TT-SCCCH
T ss_pred             ---------CCCCcceeecc---cccc-cc-chhhh
Confidence                     56677777665   4555 67 48887

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0036  Score=54.72  Aligned_cols=78  Identities=9%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             CCCCCCceEEE-eecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHH
Q 023084           73 SSSSVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRET  138 (287)
Q Consensus        73 ~~~~~~~~iyt-Gi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~  138 (287)
                      +..+.++.||+ |.=|+|.+||||+.+++  .-+.++++  |++|.+. -.|.|..-.       ..++++ ..+...+.
T Consensus        17 ~~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~   96 (315)
T d1li5a2          17 PIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM   96 (315)
T ss_dssp             CSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhh
Confidence            34455566676 77667999999999877  34566666  8998654 556654311       123433 44455677


Q ss_pred             HHHHHHcCCCCC
Q 023084          139 AAIYLACGIDNS  150 (287)
Q Consensus       139 i~~~lA~GiDp~  150 (287)
                      .+++.++++.+.
T Consensus        97 ~~~~~~~~i~~~  108 (315)
T d1li5a2          97 HKDFDALNILRP  108 (315)
T ss_dssp             HHHHHHTTCCCC
T ss_pred             hhhHHhcCCCCC
Confidence            888888887543

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0073  Score=52.96  Aligned_cols=75  Identities=25%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceee--cC-----CCCHHH-HHHHHHHHHHHH
Q 023084           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI--TL-----PYDTQQ-LSKATRETAAIY  142 (287)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~--t~-----~~d~~~-i~~~~~~~i~~~  142 (287)
                      ++..|-+++ -|+|++||||..+.+  .-+.++++  |++|.+.. .|.|..  +.     ..++.+ .+++.....+++
T Consensus         2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~   81 (350)
T d1pfva2           2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF   81 (350)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHH
Confidence            344555555 566999999998865  22344444  89986554 455431  11     124433 444567788888


Q ss_pred             HHcCCCCCc
Q 023084          143 LACGIDNSK  151 (287)
Q Consensus       143 lA~GiDp~k  151 (287)
                      .++++|++.
T Consensus        82 ~~l~i~~~~   90 (350)
T d1pfva2          82 AGFNISYDN   90 (350)
T ss_dssp             HHTTCCCSE
T ss_pred             HHcCCCccc
Confidence            999998763

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0068  Score=52.63  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceee--cC-----CCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 023084           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI--TL-----PYDT-QQLSKATRETAAIYLACGIDNSK  151 (287)
Q Consensus        87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~--t~-----~~d~-~~i~~~~~~~i~~~lA~GiDp~k  151 (287)
                      |||++||||+.+.+  .-+.++.+  |++|.+.. .|.|..  ..     -.++ +.+..+..++...+.+.|++++.
T Consensus        14 pnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~   91 (348)
T d2d5ba2          14 VNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDD   91 (348)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred             CCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhcCccccc
Confidence            78999999988765  22444444  99986554 444321  00     0133 33445566777778888998764

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.77  E-value=0.0048  Score=51.56  Aligned_cols=46  Identities=24%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CCceEEEeecCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecceee
Q 023084           77 VKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI  122 (287)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~i-lIaD~hA~  122 (287)
                      .++.+-+|.-|||.+||||+.+++.  -+.++.+  |++|.+ ...|.|..
T Consensus        18 ~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~   68 (317)
T d1irxa2          18 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDR   68 (317)
T ss_dssp             SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSB
T ss_pred             CeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcc
Confidence            4556778999999999999887662  2444443  888754 45555543

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=95.35  E-value=0.043  Score=49.11  Aligned_cols=83  Identities=14%  Similarity=0.101  Sum_probs=47.9

Q ss_pred             CCceEEEe--ecCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-cceeecC----------CC-CH----------
Q 023084           77 VKKRIVSG--VQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL----------PY-DT----------  128 (287)
Q Consensus        77 ~~~~iytG--i~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~ilIa-D~hA~t~----------~~-d~----------  128 (287)
                      ++..+++.  --|+|.+||||+.+.+.  -+.++++  |++|++..+ |.|....          ++ .+          
T Consensus        33 ~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~  112 (425)
T d1ivsa4          33 KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLE  112 (425)
T ss_dssp             SCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHH
T ss_pred             CCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHHHH
Confidence            44455555  34559999999998662  2555655  899877654 4443211          00 00          


Q ss_pred             ---HHHHHHHHHHHHHHHHcCCCCCceEEEEccc
Q 023084          129 ---QQLSKATRETAAIYLACGIDNSKASVFVQSH  159 (287)
Q Consensus       129 ---~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~  159 (287)
                         ....++...+.+++.++|+..+....+.-++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~  146 (425)
T d1ivsa4         113 RVWQWKEESGGTILKQLKRLGASADWSREAFTMD  146 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCcchhhcccc
Confidence               0122334556677888998776544444443

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=91.61  E-value=0.16  Score=43.72  Aligned_cols=65  Identities=14%  Similarity=0.269  Sum_probs=36.4

Q ss_pred             cCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEecc-ee--ecC-----CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 023084           86 QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIVDL-HA--ITL-----PYDTQQ-LSKATRETAAIYLACGIDNS  150 (287)
Q Consensus        86 ~PTG~lHLGh~vg-~i--~~~~~LQ~--g~~~~ilIaD~-hA--~t~-----~~d~~~-i~~~~~~~i~~~lA~GiDp~  150 (287)
                      -|||.+||||..+ .+  .-+.++++  |++|.+..+.+ |.  +..     ..++++ +..+.....+++.+.+++.+
T Consensus        12 ~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (361)
T d1rqga2          12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFD   90 (361)
T ss_dssp             BTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred             CCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhcccccccccccc
Confidence            3679999999654 23  23444444  89987765533 21  110     123333 33345556667777777654

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=90.94  E-value=0.13  Score=46.66  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=45.1

Q ss_pred             CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeec-C-------CCCHHH-HHHHHHHHHHHHH
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT-L-------PYDTQQ-LSKATRETAAIYL  143 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA~t-~-------~~d~~~-i~~~~~~~i~~~l  143 (287)
                      ++.|.+|. -+||.+||||+++.+  .-+.++++  |+++++..+-+|+=+ .       ..++.+ ..+....+.+++.
T Consensus        34 ~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~  113 (494)
T d1h3na3          34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR  113 (494)
T ss_dssp             EEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHH
Confidence            45666663 234999999998754  22455555  889888776554433 1       023332 3445666778888


Q ss_pred             HcCCCCC
Q 023084          144 ACGIDNS  150 (287)
Q Consensus       144 A~GiDp~  150 (287)
                      .+|+..|
T Consensus       114 ~~g~~~d  120 (494)
T d1h3na3         114 LMGILYD  120 (494)
T ss_dssp             HTTCCCC
T ss_pred             hcCcccC
Confidence            8897444

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=90.38  E-value=0.058  Score=48.53  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             CceEEEe-ecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccee
Q 023084           78 KKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA  121 (287)
Q Consensus        78 ~~~iytG-i~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA  121 (287)
                      +++|.+| =-|+|.+||||+.+.+  .-+.++|+  |++|++.. .|.|.
T Consensus        39 ~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG   88 (452)
T d1ilea3          39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG   88 (452)
T ss_dssp             BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred             CEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCC
Confidence            3444432 3467999999988765  23455665  89986654 45553

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.30  E-value=0.14  Score=45.39  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=27.5

Q ss_pred             EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 023084           82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL  119 (287)
Q Consensus        82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~  119 (287)
                      |+.--|||+||+||..+++  ..+.++-+  |++|  .+.|.|+
T Consensus        14 ~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~   57 (348)
T d1f7ua2          14 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW   57 (348)
T ss_dssp             CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred             ecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCc
Confidence            6777899999999999765  33444434  8887  4567775

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=84.75  E-value=0.18  Score=45.03  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 023084           82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL  119 (287)
Q Consensus        82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~  119 (287)
                      |+.--|||+||+||+.+++  ..+.++-+  |++|  ...|.||
T Consensus        13 f~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~   56 (370)
T d1iq0a2          13 HTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT   56 (370)
T ss_dssp             CCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred             ecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCc
Confidence            7888899999999999765  33444433  8876  4568886

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.02  E-value=0.63  Score=42.18  Aligned_cols=45  Identities=18%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             CceEEEee-cCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecceee
Q 023084           78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI  122 (287)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilI-aD~hA~  122 (287)
                      ++.+..|. -|+|.+||||+++.+..  +.+++.  |++|.+.. -|.|.+
T Consensus        49 ~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~   99 (450)
T d1ffya3          49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL   99 (450)
T ss_dssp             BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSH
T ss_pred             cEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCc
Confidence            45666665 23599999999875522  444555  88886654 455544

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.52  E-value=0.55  Score=42.59  Aligned_cols=15  Identities=27%  Similarity=0.412  Sum_probs=12.0

Q ss_pred             hcCCCEEEeeccchH
Q 023084          214 LYQSDFVPVGEDQKQ  228 (287)
Q Consensus       214 ~~~adlvpvG~DQ~~  228 (287)
                      .+-+|+...|.||..
T Consensus       352 ~~P~d~~~~G~Di~r  366 (450)
T d1ffya3         352 SFPADMYLEGSDQYR  366 (450)
T ss_dssp             CSSBSEEEEEGGGGT
T ss_pred             cCCCcccccCcchhh
Confidence            345899999999963

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=81.25  E-value=0.67  Score=41.15  Aligned_cols=13  Identities=38%  Similarity=0.693  Sum_probs=10.8

Q ss_pred             CCCEEEeeccchH
Q 023084          216 QSDFVPVGEDQKQ  228 (287)
Q Consensus       216 ~adlvpvG~DQ~~  228 (287)
                      -+++...|.||..
T Consensus       355 p~~~~~~g~d~~~  367 (452)
T d1ilea3         355 PADFIAEGIDQTR  367 (452)
T ss_dssp             SBSBEEEEGGGGG
T ss_pred             cchhheecCceec
Confidence            4788999999974